locus-tag class description STH1 PF11638 DnaA N-terminal domain STH1 PF08299 Bacterial dnaA protein helix-turn-helix STH1 PF00308 Bacterial dnaA protein STH10 PF02403 Seryl-tRNA synthetase N-terminal domain STH10 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) STH1000 PF01053 Cys/Met metabolism PLP-dependent enzyme STH1001 PF16916 Dimerisation domain of Zinc Transporter STH1001 PF01545 Cation efflux family STH1002 PF00149 Calcineurin-like phosphoesterase STH1002 PF00746 LPXTG cell wall anchor motif STH1002 PF00565 Staphylococcal nuclease homologue STH1002 PF02872 5'-nucleotidase, C-terminal domain STH1004 PF01709 Transcriptional regulator STH1005 PF01176 Translation initiation factor 1A / IF-1 STH1008 PF00342 Phosphoglucose isomerase STH1009 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) STH101 PF08486 Stage II sporulation protein STH1010 PF02417 Chromate transporter STH1013 PF01522 Polysaccharide deacetylase STH1014 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain STH1014 PF00205 Thiamine pyrophosphate enzyme, central domain STH1014 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain STH1021 PF13472 GDSL-like Lipase/Acylhydrolase family STH1022 PF13185 GAF domain STH1022 PF07730 Histidine kinase STH1023 PF00072 Response regulator receiver domain STH1023 PF00196 Bacterial regulatory proteins, luxR family STH1025 PF13193 AMP-binding enzyme C-terminal domain STH1025 PF00501 AMP-binding enzyme STH1025 PF16177 Acetyl-coenzyme A synthetase N-terminus STH1026 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain STH1026 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain STH1028 PF03063 Prismane/CO dehydrogenase family STH1029 PF01520 N-acetylmuramoyl-L-alanine amidase STH103 PF12116 Stage III sporulation protein D STH1030 PF00155 Aminotransferase class I and II STH1031 PF02875 Mur ligase family, glutamate ligase domain STH1031 PF08245 Mur ligase middle domain STH1032 PF00817 impB/mucB/samB family STH1032 PF11799 impB/mucB/samB family C-terminal domain STH1032 PF11798 IMS family HHH motif STH1036 PF00528 Binding-protein-dependent transport system inner membrane component STH1036 PF12911 N-terminal TM domain of oligopeptide transport permease C STH1037 PF00528 Binding-protein-dependent transport system inner membrane component STH1038 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1039 PF02885 Glycosyl transferase family, helical bundle domain STH1039 PF00591 Glycosyl transferase family, a/b domain STH1039 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain STH1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH1040 PF00072 Response regulator receiver domain STH1040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) STH1040 PF00512 His Kinase A (phospho-acceptor) domain STH1040 PF01627 Hpt domain STH1040 PF00672 HAMP domain STH1041 PF00072 Response regulator receiver domain STH1041 PF00486 Transcriptional regulatory protein, C terminal STH1043 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1045 PF01106 NifU-like domain STH1046 PF00485 Phosphoribulokinase / Uridine kinase family STH1047 PF02777 Iron/manganese superoxide dismutases, C-terminal domain STH1047 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain STH1050 PF01904 Protein of unknown function DUF72 STH1051 PF04542 Sigma-70 region 2 STH1051 PF08281 Sigma-70, region 4 STH1054 PF01743 Poly A polymerase head domain STH1054 PF12627 Probable RNA and SrmB- binding site of polymerase A STH1054 PF13735 tRNA nucleotidyltransferase domain 2 putative STH106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH106 PF03466 LysR substrate binding domain STH1060 PF00497 Bacterial extracellular solute-binding proteins, family 3 STH1062 PF00005 ABC transporter STH1064 PF07690 Major Facilitator Superfamily STH1066 PF08245 Mur ligase middle domain STH1066 PF08353 Domain of unknown function (DUF1727) STH1067 PF07685 CobB/CobQ-like glutamine amidotransferase domain STH1068 PF01510 N-acetylmuramoyl-L-alanine amidase STH107 PF04143 Sulphur transport STH1071 PF01040 UbiA prenyltransferase family STH1073 PF09107 Elongation factor SelB, winged helix STH1073 PF09106 Elongation factor SelB, winged helix STH1073 PF09105 Elongation factor SelB, winged helix STH1073 PF03144 Elongation factor Tu domain 2 STH1073 PF00009 Elongation factor Tu GTP binding domain STH1075 PF02557 D-alanyl-D-alanine carboxypeptidase STH1076 PF01551 Peptidase family M23 STH1078 PF04463 Protein of unknown function (DUF523) STH1079 PF05343 M42 glutamyl aminopeptidase STH108 PF00581 Rhodanese-like domain STH1080 PF05343 M42 glutamyl aminopeptidase STH1082 PF12729 Four helix bundle sensory module for signal transduction STH1082 PF00672 HAMP domain STH1082 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH1083 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH1083 PF08447 PAS fold STH1083 PF13426 PAS domain STH1084 PF00902 Sec-independent protein translocase protein (TatC) STH1085 PF12848 ABC transporter STH1085 PF16326 ABC transporter C-terminal domain STH1085 PF00005 ABC transporter STH1086 PF03807 NADP oxidoreductase coenzyme F420-dependent STH1086 PF14748 Pyrroline-5-carboxylate reductase dimerisation STH1089 PF07486 Cell Wall Hydrolase STH1089 PF01471 Putative peptidoglycan binding domain STH109 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH109 PF01568 Molydopterin dinucleotide binding domain STH109 PF00384 Molybdopterin oxidoreductase STH1090 PF14620 YpeB sporulation STH1091 PF00707 Translation initiation factor IF-3, C-terminal domain STH1091 PF05198 Translation initiation factor IF-3, N-terminal domain STH1092 PF01632 Ribosomal protein L35 STH1093 PF00453 Ribosomal protein L20 STH1094 PF02080 TrkA-C domain STH1094 PF02254 TrkA-N domain STH1095 PF02386 Cation transport protein STH1096 PF02254 TrkA-N domain STH1096 PF02080 TrkA-C domain STH1097 PF00588 SpoU rRNA Methylase family STH1097 PF08032 RNA 2'-O ribose methyltransferase substrate binding STH11 PF14437 MafB19-like deaminase STH1101 PF13439 Glycosyltransferase Family 4 STH1101 PF00534 Glycosyl transferases group 1 STH1102 PF03023 Lipid II flippase MurJ STH1105 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain STH1105 PF01409 tRNA synthetases class II core domain (F) STH1106 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain STH1106 PF03483 B3/4 domain STH1106 PF03147 Ferredoxin-fold anticodon binding domain STH1106 PF01588 Putative tRNA binding domain STH1106 PF03484 tRNA synthetase B5 domain STH1107 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1108 PF00528 Binding-protein-dependent transport system inner membrane component STH1109 PF00528 Binding-protein-dependent transport system inner membrane component STH1109 PF12911 N-terminal TM domain of oligopeptide transport permease C STH111 PF13247 4Fe-4S dicluster domain STH1110 PF00005 ABC transporter STH1110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH1111 PF00005 ABC transporter STH1111 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH1112 PF00005 ABC transporter STH1112 PF12848 ABC transporter STH1112 PF16326 ABC transporter C-terminal domain STH1114 PF06415 BPG-independent PGAM N-terminus (iPGM_N) STH1114 PF01676 Metalloenzyme superfamily STH1115 PF00488 MutS domain V STH1115 PF01713 Smr domain STH1116 PF01966 HD domain STH1117 PF01408 Oxidoreductase family, NAD-binding Rossmann fold STH1117 PF02894 Oxidoreductase family, C-terminal alpha/beta domain STH1118 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain STH1118 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III STH1118 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I STH1118 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II STH1120 PF00483 Nucleotidyl transferase STH1121 PF00905 Penicillin binding protein transpeptidase domain STH1121 PF00912 Transglycosylase STH1122 PF00579 tRNA synthetases class I (W and Y) STH1122 PF01479 S4 domain STH1124 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1126 PF00899 ThiF family STH1127 PF00899 ThiF family STH1129 PF00872 Transposase, Mutator family STH113 PF00163 Ribosomal protein S4/S9 N-terminal domain STH113 PF01479 S4 domain STH1130 PF02796 Helix-turn-helix domain of resolvase STH1130 PF00665 Integrase core domain STH1131 PF01695 IstB-like ATP binding protein STH1132 PF01695 IstB-like ATP binding protein STH1137 PF00291 Pyridoxal-phosphate dependent enzyme STH114 PF04055 Radical SAM superfamily STH1142 PF01507 Phosphoadenosine phosphosulfate reductase family STH1143 PF01747 ATP-sulfurylase STH1143 PF14306 PUA-like domain STH1145 PF00005 ABC transporter STH1145 PF08402 TOBE domain STH1147 PF00528 Binding-protein-dependent transport system inner membrane component STH1148 PF01546 Peptidase family M20/M25/M40 STH1148 PF07687 Peptidase dimerisation domain STH1149 PF02540 NAD synthase STH115 PF01228 Glycine radical STH115 PF02901 Pyruvate formate lyase-like STH1152 PF08281 Sigma-70, region 4 STH1152 PF04542 Sigma-70 region 2 STH1155 PF00528 Binding-protein-dependent transport system inner membrane component STH1156 PF08402 TOBE domain STH1156 PF00005 ABC transporter STH1157 PF13416 Bacterial extracellular solute-binding protein STH1158 PF03816 Cell envelope-related transcriptional attenuator domain STH1159 PF02075 Crossover junction endodeoxyribonuclease RuvC STH1160 PF01330 RuvA N terminal domain STH1160 PF07499 RuvA, C-terminal domain STH1161 PF05496 Holliday junction DNA helicase RuvB P-loop domain STH1161 PF17864 RuvB AAA lid domain STH1161 PF05491 RuvB C-terminal winged helix domain STH1162 PF04542 Sigma-70 region 2 STH1164 PF08486 Stage II sporulation protein STH1165 PF02547 Queuosine biosynthesis protein STH1166 PF01702 Queuine tRNA-ribosyltransferase STH1167 PF00583 Acetyltransferase (GNAT) family STH1168 PF02699 Preprotein translocase subunit STH1169 PF00196 Bacterial regulatory proteins, luxR family STH1169 PF00072 Response regulator receiver domain STH117 PF07977 FabA-like domain STH1170 PF04293 SpoVR like protein STH1171 PF04285 Protein of unknown function (DUF444) STH1172 PF06798 PrkA serine protein kinase C-terminal domain STH1172 PF08298 PrkA AAA domain STH1173 PF01047 MarR family STH1175 PF08281 Sigma-70, region 4 STH1175 PF04542 Sigma-70 region 2 STH1177 PF00072 Response regulator receiver domain STH1177 PF00196 Bacterial regulatory proteins, luxR family STH118 PF02773 S-adenosylmethionine synthetase, C-terminal domain STH118 PF02772 S-adenosylmethionine synthetase, central domain STH118 PF00438 S-adenosylmethionine synthetase, N-terminal domain STH1184 PF00553 Cellulose binding domain STH1184 PF00759 Glycosyl hydrolase family 9 STH1184 PF00942 Cellulose binding domain STH1184 PF00041 Fibronectin type III domain STH1186 PF02310 B12 binding domain STH1186 PF01642 Methylmalonyl-CoA mutase STH1187 PF02310 B12 binding domain STH1187 PF01642 Methylmalonyl-CoA mutase STH1189 PF01039 Carboxyl transferase domain STH1190 PF02436 Conserved carboxylase domain STH1190 PF00682 HMGL-like STH1190 PF00364 Biotin-requiring enzyme STH1191 PF00289 Biotin carboxylase, N-terminal domain STH1191 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain STH1191 PF02785 Biotin carboxylase C-terminal domain STH1192 PF01812 5-formyltetrahydrofolate cyclo-ligase family STH1195 PF00370 FGGY family of carbohydrate kinases, N-terminal domain STH1195 PF02782 FGGY family of carbohydrate kinases, C-terminal domain STH1196 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain STH1196 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase STH1197 PF00005 ABC transporter STH1197 PF13732 Domain of unknown function (DUF4162) STH12 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1200 PF02381 MraZ protein, putative antitoxin-like STH1201 PF01795 MraW methylase family STH1203 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain STH1203 PF00117 Glutamine amidotransferase class-I STH1204 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain STH1204 PF02142 MGS-like domain STH1204 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain STH1205 PF03717 Penicillin-binding Protein dimerisation domain STH1205 PF03793 PASTA domain STH1205 PF00905 Penicillin binding protein transpeptidase domain STH1206 PF08245 Mur ligase middle domain STH1206 PF02875 Mur ligase family, glutamate ligase domain STH1206 PF01225 Mur ligase family, catalytic domain STH1207 PF01225 Mur ligase family, catalytic domain STH1207 PF02875 Mur ligase family, glutamate ligase domain STH1207 PF08245 Mur ligase middle domain STH1208 PF00953 Glycosyl transferase family 4 STH1208 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 STH1209 PF01098 Cell cycle protein STH121 PF02599 Global regulator protein family STH1210 PF04101 Glycosyltransferase family 28 C-terminal domain STH1210 PF03033 Glycosyltransferase family 28 N-terminal domain STH1211 PF01565 FAD binding domain STH1211 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain STH1212 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) STH1213 PF03069 Acetamidase/Formamidase family STH1214 PF00781 Diacylglycerol kinase catalytic domain STH1215 PF08478 POTRA domain, FtsQ-type STH1215 PF03799 Cell division protein FtsQ STH1216 PF05949 Bacterial protein of unknown function (DUF881) STH1217 PF06947 Protein of unknown function (DUF1290) STH1218 PF02491 SHS2 domain inserted in FTSA STH1219 PF00091 Tubulin/FtsZ family, GTPase domain STH1219 PF12327 FtsZ family, C-terminal domain STH122 PF02623 FliW protein STH1221 PF04545 Sigma-70, region 4 STH1221 PF04542 Sigma-70 region 2 STH1222 PF04542 Sigma-70 region 2 STH1222 PF04545 Sigma-70, region 4 STH1222 PF04539 Sigma-70 region 3 STH1227 PF01168 Alanine racemase, N-terminal domain STH1228 PF04472 Cell division protein SepF STH1229 PF02325 YGGT family STH123 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein STH123 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus STH1230 PF05103 DivIVA protein STH1231 PF00133 tRNA synthetases class I (I, L, M and V) STH1231 PF06827 Zinc finger found in FPG and IleRS STH1231 PF08264 Anticodon-binding domain of tRNA STH1232 PF02416 mttA/Hcf106 family STH1237 PF07969 Amidohydrolase family STH1238 PF01546 Peptidase family M20/M25/M40 STH1238 PF07687 Peptidase dimerisation domain STH1239 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1241 PF01258 Prokaryotic dksA/traR C4-type zinc finger STH1242 PF01252 Signal peptidase (SPase) II STH1243 PF00849 RNA pseudouridylate synthase STH1243 PF01479 S4 domain STH1244 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family STH1245 PF01116 Fructose-bisphosphate aldolase class-II STH1246 PF00294 pfkB family carbohydrate kinase STH1247 PF03613 PTS system mannose/fructose/sorbose family IID component STH1248 PF03609 PTS system sorbose-specific iic component STH1249 PF03830 PTS system sorbose subfamily IIB component STH125 PF07517 SecA DEAD-like domain STH125 PF07516 SecA Wing and Scaffold domain STH125 PF01043 SecA preprotein cross-linking domain STH125 PF02810 SEC-C motif STH1251 PF03610 PTS system fructose IIA component STH1251 PF03830 PTS system sorbose subfamily IIB component STH1252 PF01380 SIS domain STH1253 PF02770 Acyl-CoA dehydrogenase, middle domain STH1253 PF00441 Acyl-CoA dehydrogenase, C-terminal domain STH1253 PF02771 Acyl-CoA dehydrogenase, N-terminal domain STH1254 PF02515 CoA-transferase family III STH1256 PF00156 Phosphoribosyl transferase domain STH1257 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain STH1257 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain STH1258 PF01979 Amidohydrolase family STH1259 PF00175 Oxidoreductase NAD-binding domain STH1259 PF00970 Oxidoreductase FAD-binding domain STH1259 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B STH126 PF01434 Peptidase family M41 STH126 PF06480 FtsH Extracellular STH126 PF17862 AAA+ lid domain STH126 PF00004 ATPase family associated with various cellular activities (AAA) STH1260 PF01180 Dihydroorotate dehydrogenase STH1261 PF00156 Phosphoribosyl transferase domain STH1265 PF01906 Putative heavy-metal-binding STH1267 PF00465 Iron-containing alcohol dehydrogenase STH1269 PF00296 Luciferase-like monooxygenase STH127 PF00939 Sodium:sulfate symporter transmembrane region STH1270 PF01546 Peptidase family M20/M25/M40 STH1270 PF07687 Peptidase dimerisation domain STH1271 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) STH1273 PF00370 FGGY family of carbohydrate kinases, N-terminal domain STH1273 PF02782 FGGY family of carbohydrate kinases, C-terminal domain STH1274 PF00282 Pyridoxal-dependent decarboxylase conserved domain STH1275 PF00874 PRD domain STH1275 PF00158 Sigma-54 interaction domain STH1275 PF03610 PTS system fructose IIA component STH1276 PF03830 PTS system sorbose subfamily IIB component STH1276 PF03610 PTS system fructose IIA component STH1277 PF03610 PTS system fructose IIA component STH1278 PF03613 PTS system mannose/fructose/sorbose family IID component STH128 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1280 PF01979 Amidohydrolase family STH1283 PF00005 ABC transporter STH1284 PF01032 FecCD transport family STH1285 PF01032 FecCD transport family STH1296 PF00665 Integrase core domain STH1297 PF00665 Integrase core domain STH1298 PF00665 Integrase core domain STH1299 PF01695 IstB-like ATP binding protein STH13 PF12169 DNA polymerase III subunits gamma and tau domain III STH130 PF12911 N-terminal TM domain of oligopeptide transport permease C STH130 PF00528 Binding-protein-dependent transport system inner membrane component STH1300 PF02796 Helix-turn-helix domain of resolvase STH1300 PF00665 Integrase core domain STH1303 PF13361 UvrD-like helicase C-terminal domain STH1303 PF00580 UvrD/REP helicase N-terminal domain STH1307 PF00580 UvrD/REP helicase N-terminal domain STH1307 PF13361 UvrD-like helicase C-terminal domain STH1310 PF00145 C-5 cytosine-specific DNA methylase STH1311 PF01547 Bacterial extracellular solute-binding protein STH1312 PF00528 Binding-protein-dependent transport system inner membrane component STH1313 PF00528 Binding-protein-dependent transport system inner membrane component STH1315 PF04041 beta-1,4-mannooligosaccharide phosphorylase STH1316 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain STH1317 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg STH1317 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase STH1317 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II STH1318 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH1318 PF03466 LysR substrate binding domain STH1319 PF03949 Malic enzyme, NAD binding domain STH1319 PF00390 Malic enzyme, N-terminal domain STH132 PF00266 Aminotransferase class-V STH1325 PF04073 Aminoacyl-tRNA editing domain STH1326 PF01435 Peptidase family M48 STH1327 PF01139 tRNA-splicing ligase RtcB STH133 PF02080 TrkA-C domain STH1330 PF01063 Amino-transferase class IV STH1333 PF03060 Nitronate monooxygenase STH1335 PF00690 Cation transporter/ATPase, N-terminus STH1335 PF00689 Cation transporting ATPase, C-terminus STH1337 PF03755 YicC-like family, N-terminal region STH1337 PF08340 Domain of unknown function (DUF1732) STH1338 PF04025 Domain of unknown function (DUF370) STH1339 PF00625 Guanylate kinase STH134 PF00999 Sodium/hydrogen exchanger family STH1340 PF01192 RNA polymerase Rpb6 STH1341 PF04127 DNA / pantothenate metabolism flavoprotein STH1341 PF02441 Flavoprotein STH1342 PF17764 3′ DNA-binding domain (3′BD) STH1342 PF18319 PriA DNA helicase Cys-rich region (CRR) domain STH1342 PF00271 Helicase conserved C-terminal domain STH1342 PF04851 Type III restriction enzyme, res subunit STH1342 PF18074 Primosomal protein N C-terminal domain STH1343 PF01327 Polypeptide deformylase STH1344 PF00551 Formyl transferase STH1344 PF02911 Formyl transferase, C-terminal domain STH1345 PF04298 Putative neutral zinc metallopeptidase STH1346 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1349 PF01029 NusB family STH1349 PF01189 16S rRNA methyltransferase RsmB/F STH1351 PF04055 Radical SAM superfamily STH1353 PF00069 Protein kinase domain STH1353 PF03793 PASTA domain STH1354 PF03193 RsgA GTPase STH1354 PF16745 RsgA N-terminal domain STH1355 PF00834 Ribulose-phosphate 3 epimerase family STH1356 PF01584 CheW-like domain STH1358 PF01430 Hsp33 protein STH1359 PF00830 Ribosomal L28 family STH136 PF00472 RF-1 domain STH136 PF03462 PCRF domain STH1360 PF03780 Asp23 family, cell envelope-related function STH1361 PF02734 DAK2 domain STH1361 PF13684 Dihydroxyacetone kinase family STH1362 PF00535 Glycosyl transferase family 2 STH1363 PF00534 Glycosyl transferases group 1 STH1363 PF13439 Glycosyltransferase Family 4 STH1364 PF03551 Transcriptional regulator PadR-like family STH1364 PF13847 Methyltransferase domain STH1365 PF01757 Acyltransferase family STH1367 PF00534 Glycosyl transferases group 1 STH1367 PF13439 Glycosyltransferase Family 4 STH1368 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain STH1368 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain STH1368 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain STH1369 PF16363 GDP-mannose 4,6 dehydratase STH1370 PF16363 GDP-mannose 4,6 dehydratase STH1371 PF00483 Nucleotidyl transferase STH1372 PF04321 RmlD substrate binding domain STH1373 PF13439 Glycosyltransferase Family 4 STH1373 PF00534 Glycosyl transferases group 1 STH138 PF03808 Glycosyl transferase WecB/TagA/CpsF family STH1381 PF13344 Haloacid dehalogenase-like hydrolase STH1381 PF00293 NUDIX domain STH1384 PF17191 RecG wedge domain STH1384 PF00270 DEAD/DEAH box helicase STH1384 PF00271 Helicase conserved C-terminal domain STH1386 PF00004 ATPase family associated with various cellular activities (AAA) STH1386 PF17862 AAA+ lid domain STH1386 PF01434 Peptidase family M41 STH1388 PF04143 Sulphur transport STH1389 PF01206 Sulfurtransferase TusA STH139 PF00005 ABC transporter STH1390 PF01965 DJ-1/PfpI family STH1391 PF01741 Large-conductance mechanosensitive channel, MscL STH1392 PF00561 alpha/beta hydrolase fold STH14 PF02575 YbaB/EbfC DNA-binding family STH140 PF02687 FtsX-like permease family STH140 PF18075 FtsX extracellular domain STH1400 PF08279 HTH domain STH1400 PF03099 Biotin/lipoate A/B protein ligase family STH1400 PF02237 Biotin protein ligase C terminal domain STH1404 PF02632 BioY family STH1406 PF07690 Major Facilitator Superfamily STH1408 PF00117 Glutamine amidotransferase class-I STH1409 PF00591 Glycosyl transferase family, a/b domain STH1409 PF02885 Glycosyl transferase family, helical bundle domain STH141 PF01464 Transglycosylase SLT domain STH141 PF01551 Peptidase family M23 STH141 PF10145 Phage-related minor tail protein STH1410 PF00149 Calcineurin-like phosphoesterase STH1411 PF00579 tRNA synthetases class I (W and Y) STH1412 PF00218 Indole-3-glycerol phosphate synthase STH1413 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase STH1414 PF00291 Pyridoxal-phosphate dependent enzyme STH1415 PF00290 Tryptophan synthase alpha chain STH1417 PF00793 DAHP synthetase I family STH1417 PF18152 DAHP synthase ferredoxin-like domain STH1418 PF02153 Prephenate dehydrogenase STH1418 PF01842 ACT domain STH1419 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) STH142 PF01471 Putative peptidoglycan binding domain STH142 PF03572 Peptidase family S41 STH142 PF17820 PDZ domain STH1421 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH1421 PF08447 PAS fold STH1421 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH1421 PF08447 PAS fold STH1422 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1423 PF00528 Binding-protein-dependent transport system inner membrane component STH1424 PF12911 N-terminal TM domain of oligopeptide transport permease C STH1424 PF00528 Binding-protein-dependent transport system inner membrane component STH1425 PF01118 Semialdehyde dehydrogenase, NAD binding domain STH1425 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain STH1426 PF00664 ABC transporter transmembrane region STH1426 PF00005 ABC transporter STH1427 PF00664 ABC transporter transmembrane region STH1427 PF00005 ABC transporter STH1430 PF00269 Small, acid-soluble spore proteins, alpha/beta type STH1431 PF00269 Small, acid-soluble spore proteins, alpha/beta type STH1432 PF00269 Small, acid-soluble spore proteins, alpha/beta type STH1433 PF03418 Germination protease STH1435 PF02086 D12 class N6 adenine-specific DNA methyltransferase STH1437 PF06725 3D domain STH1437 PF01476 LysM domain STH1439 PF01467 Cytidylyltransferase-like STH144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1441 PF13180 PDZ domain STH1441 PF05362 Lon protease (S16) C-terminal proteolytic domain STH1443 PF01783 Ribosomal L32p protein family STH1444 PF00583 Acetyltransferase (GNAT) family STH1446 PF03061 Thioesterase superfamily STH1447 PF02504 Fatty acid synthesis protein STH1448 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III STH1448 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal STH1449 PF02645 Uncharacterised protein, DegV family COG1307 STH145 PF00528 Binding-protein-dependent transport system inner membrane component STH1450 PF00698 Acyl transferase domain STH1452 PF00550 Phosphopantetheine attachment site STH1453 PF14622 Ribonuclease-III-like STH1453 PF00035 Double-stranded RNA binding motif STH1454 PF04232 Stage V sporulation protein S (SpoVS) STH1455 PF06470 SMC proteins Flexible Hinge Domain STH1455 PF02463 RecF/RecN/SMC N terminal domain STH1457 PF00448 SRP54-type protein, GTPase domain STH1457 PF02881 SRP54-type protein, helical bundle domain STH1458 PF07739 TipAS antibiotic-recognition domain STH1458 PF13411 MerR HTH family regulatory protein STH146 PF00528 Binding-protein-dependent transport system inner membrane component STH146 PF12911 N-terminal TM domain of oligopeptide transport permease C STH1463 PF03819 MazG nucleotide pyrophosphohydrolase domain STH1464 PF04297 Putative helix-turn-helix protein, YlxM / p13 like STH1465 PF02978 Signal peptide binding domain STH1465 PF02881 SRP54-type protein, helical bundle domain STH1465 PF00448 SRP54-type protein, GTPase domain STH1466 PF00886 Ribosomal protein S16 STH1469 PF01782 RimM N-terminal domain STH1469 PF05239 PRC-barrel domain STH147 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH1470 PF01746 tRNA (Guanine-1)-methyltransferase STH1471 PF01245 Ribosomal protein L19 STH1472 PF10502 Signal peptidase, peptidase S26 STH1473 PF01926 50S ribosome-binding GTPase STH1474 PF01351 Ribonuclease HII STH1475 PF02021 Uncharacterised protein family UPF0102 STH1476 PF13335 Magnesium chelatase, subunit ChlI C-terminal STH1476 PF01078 Magnesium chelatase, subunit ChlI STH148 PF00528 Binding-protein-dependent transport system inner membrane component STH1480 PF02481 DNA recombination-mediator protein A STH1480 PF17782 DprA winged helix domain STH1481 PF01131 DNA topoisomerase STH1481 PF01751 Toprim domain STH1481 PF01396 Topoisomerase DNA binding C4 zinc finger STH1482 PF01134 Glucose inhibited division protein A STH1483 PF00589 Phage integrase family STH1483 PF02899 Phage integrase, N-terminal SAM-like domain STH1484 PF06018 CodY GAF-like domain STH1484 PF08222 CodY helix-turn-helix domain STH149 PF12911 N-terminal TM domain of oligopeptide transport permease C STH149 PF00528 Binding-protein-dependent transport system inner membrane component STH1491 PF00318 Ribosomal protein S2 STH1492 PF00889 Elongation factor TS STH1493 PF00696 Amino acid kinase family STH1494 PF01765 Ribosome recycling factor STH1496 PF01255 Putative undecaprenyl diphosphate synthase STH1498 PF01594 AI-2E family transporter STH1499 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase STH1499 PF13288 DXP reductoisomerase C-terminal domain STH1499 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain STH15 PF00633 Helix-hairpin-helix motif STH15 PF13662 Toprim domain STH15 PF02132 RecR protein STH150 PF01884 PcrB family STH1500 PF17820 PDZ domain STH1500 PF02163 Peptidase family M50 STH1501 PF04551 GcpE protein STH1502 PF09180 Prolyl-tRNA synthetase, C-terminal STH1502 PF03129 Anticodon binding domain STH1502 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) STH1504 PF01734 Patatin-like phospholipase STH1506 PF01297 Zinc-uptake complex component A periplasmic STH1507 PF00005 ABC transporter STH1508 PF00950 ABC 3 transport family STH1509 PF00950 ABC 3 transport family STH151 PF17757 UvrB interaction domain STH151 PF00271 Helicase conserved C-terminal domain STH151 PF12344 Ultra-violet resistance protein B STH151 PF04851 Type III restriction enzyme, res subunit STH151 PF02151 UvrB/uvrC motif STH1510 PF00535 Glycosyl transferase family 2 STH1511 PF02308 MgtC family STH1512 PF00929 Exonuclease STH1512 PF02811 PHP domain STH1512 PF14480 DNA polymerase III polC-type N-terminus I STH1512 PF17657 Bacterial DNA polymerase III alpha subunit finger domain STH1512 PF07733 Bacterial DNA polymerase III alpha NTPase domain STH1512 PF14579 Helix-hairpin-helix motif STH1512 PF11490 DNA polymerase III polC-type N-terminus II STH1516 PF03747 ADP-ribosylglycohydrolase STH1518 PF17384 RimP C-terminal SH3 domain STH1518 PF02576 RimP N-terminal domain STH1519 PF00575 S1 RNA binding domain STH1519 PF13184 NusA-like KH domain STH1519 PF08529 NusA N-terminal domain STH1520 PF04296 Protein of unknown function (DUF448) STH1521 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family STH1522 PF04760 Translation initiation factor IF-2, N-terminal region STH1522 PF11987 Translation-initiation factor 2 STH1522 PF00009 Elongation factor Tu GTP binding domain STH1523 PF02033 Ribosome-binding factor A STH1524 PF01368 DHH family STH1524 PF02272 DHHA1 domain STH1525 PF16198 tRNA pseudouridylate synthase B C-terminal domain STH1525 PF01509 TruB family pseudouridylate synthase (N terminal domain) STH1526 PF01687 Riboflavin kinase STH1526 PF06574 FAD synthetase STH1527 PF00849 RNA pseudouridylate synthase STH1527 PF01479 S4 domain STH1528 PF00312 Ribosomal protein S15 STH1529 PF08281 Sigma-70, region 4 STH1529 PF04542 Sigma-70 region 2 STH1531 PF00575 S1 RNA binding domain STH1531 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain STH1531 PF01138 3' exoribonuclease family, domain 1 STH1531 PF03725 3' exoribonuclease family, domain 2 STH1531 PF00013 KH domain STH1532 PF00675 Insulinase (Peptidase family M16) STH1532 PF05193 Peptidase M16 inactive domain STH1533 PF00692 dUTPase STH1535 PF01584 CheW-like domain STH1536 PF01584 CheW-like domain STH1537 PF01627 Hpt domain STH1537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH1537 PF02895 Signal transducing histidine kinase, homodimeric domain STH1537 PF01584 CheW-like domain STH1537 PF07194 P2 response regulator binding domain STH1539 PF03975 CheD chemotactic sensory transduction STH154 PF09297 NADH pyrophosphatase zinc ribbon domain STH154 PF00293 NUDIX domain STH1540 PF00072 Response regulator receiver domain STH1541 PF00072 Response regulator receiver domain STH1541 PF01339 CheB methylesterase STH1542 PF03705 CheR methyltransferase, all-alpha domain STH1542 PF01739 CheR methyltransferase, SAM binding domain STH1544 PF05173 Dihydrodipicolinate reductase, C-terminus STH1544 PF01113 Dihydrodipicolinate reductase, N-terminus STH1545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain STH1545 PF16924 Dipicolinate synthase subunit A N-terminal domain STH1546 PF02441 Flavoprotein STH1547 PF02774 Semialdehyde dehydrogenase, dimerisation domain STH1547 PF01118 Semialdehyde dehydrogenase, NAD binding domain STH1548 PF00696 Amino acid kinase family STH1548 PF13840 ACT domain STH1549 PF00701 Dihydrodipicolinate synthetase family STH155 PF00583 Acetyltransferase (GNAT) family STH1550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1551 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1556 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain STH1556 PF00753 Metallo-beta-lactamase superfamily STH1556 PF17770 Ribonuclease J C-terminal domain STH1558 PF00574 Clp protease STH156 PF08543 Phosphomethylpyrimidine kinase STH1560 PF01475 Ferric uptake regulator family STH1561 PF17854 FtsK alpha domain STH1561 PF01580 FtsK/SpoIIIE family STH1561 PF09397 Ftsk gamma domain STH1564 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase STH1565 PF01040 UbiA prenyltransferase family STH1567 PF00246 Zinc carboxypeptidase STH1567 PF01476 LysM domain STH1568 PF08139 Prokaryotic membrane lipoprotein lipid attachment site STH157 PF02581 Thiamine monophosphate synthase STH157 PF02110 Hydroxyethylthiazole kinase family STH1571 PF00441 Acyl-CoA dehydrogenase, C-terminal domain STH1571 PF02771 Acyl-CoA dehydrogenase, N-terminal domain STH1571 PF02770 Acyl-CoA dehydrogenase, middle domain STH1572 PF00364 Biotin-requiring enzyme STH1577 PF00378 Enoyl-CoA hydratase/isomerase STH1579 PF01039 Carboxyl transferase domain STH1582 PF00152 tRNA synthetases class II (D, K and N) STH1582 PF01336 OB-fold nucleic acid binding domain STH1585 PF07943 Penicillin-binding protein 5, C-terminal domain STH1585 PF00768 D-alanyl-D-alanine carboxypeptidase STH1586 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 STH1587 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit STH1588 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit STH1589 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit STH159 PF00501 AMP-binding enzyme STH159 PF13193 AMP-binding enzyme C-terminal domain STH1591 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region STH1591 PF10531 SLBB domain STH1591 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit STH1592 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH1592 PF00384 Molybdopterin oxidoreductase STH1592 PF01568 Molydopterin dinucleotide binding domain STH1592 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region STH1593 PF00146 NADH dehydrogenase STH1594 PF12838 4Fe-4S dicluster domain STH1595 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 STH1596 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L STH1597 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus STH1597 PF00361 Proton-conducting membrane transporter STH1598 PF00361 Proton-conducting membrane transporter STH16 PF00749 tRNA synthetases class I (E and Q), catalytic domain STH1600 PF01497 Periplasmic binding protein STH1600 PF12833 Helix-turn-helix domain STH1601 PF01032 FecCD transport family STH1602 PF01032 FecCD transport family STH1603 PF00005 ABC transporter STH1604 PF01497 Periplasmic binding protein STH161 PF01323 DSBA-like thioredoxin domain STH1610 PF01546 Peptidase family M20/M25/M40 STH1610 PF07687 Peptidase dimerisation domain STH1612 PF00994 Probable molybdopterin binding domain STH1613 PF17284 Spermidine synthase tetramerisation domain STH1615 PF02653 Branched-chain amino acid transport system / permease component STH1616 PF02653 Branched-chain amino acid transport system / permease component STH1617 PF00005 ABC transporter STH1617 PF12399 Branched-chain amino acid ATP-binding cassette transporter STH1618 PF00005 ABC transporter STH1619 PF13186 Iron-sulfur cluster-binding domain STH1619 PF04055 Radical SAM superfamily STH162 PF12146 Serine aminopeptidase, S33 STH162 PF13026 Protein of unknown function (DUF3887) STH1623 PF00271 Helicase conserved C-terminal domain STH1623 PF09369 Domain of unknown function (DUF1998) STH1623 PF00270 DEAD/DEAH box helicase STH1624 PF00534 Glycosyl transferases group 1 STH1624 PF13439 Glycosyltransferase Family 4 STH1625 PF00403 Heavy-metal-associated domain STH1626 PF01022 Bacterial regulatory protein, arsR family STH1627 PF03965 Penicillinase repressor STH1629 PF00005 ABC transporter STH1632 PF00293 NUDIX domain STH1632 PF03099 Biotin/lipoate A/B protein ligase family STH1633 PF04055 Radical SAM superfamily STH1633 PF18693 TRAM domain STH1633 PF00919 Uncharacterized protein family UPF0004 STH1634 PF04073 Aminoacyl-tRNA editing domain STH1638 PF00004 ATPase family associated with various cellular activities (AAA) STH1638 PF17862 AAA+ lid domain STH1638 PF01434 Peptidase family M41 STH1641 PF05504 Spore germination B3/ GerAC like, C-terminal STH1642 PF03323 Bacillus/Clostridium GerA spore germination protein STH1643 PF02464 Competence-damaged protein STH1643 PF18146 Damage-inducible protein CinA KH domain STH1643 PF00994 Probable molybdopterin binding domain STH1644 PF01325 Iron dependent repressor, N-terminal DNA binding domain STH1644 PF00480 ROK family STH1645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain STH1645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain STH1646 PF02142 MGS-like domain STH1647 PF00270 DEAD/DEAH box helicase STH1647 PF00271 Helicase conserved C-terminal domain STH165 PF01638 HxlR-like helix-turn-helix STH1651 PF00005 ABC transporter STH1652 PF00528 Binding-protein-dependent transport system inner membrane component STH1655 PF13244 Domain of unknown function (DUF4040) STH1655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus STH1655 PF00361 Proton-conducting membrane transporter STH1656 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter STH1657 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L STH1659 PF01899 Na+/H+ ion antiporter subunit STH1660 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) STH1664 PF02834 LigT like Phosphoesterase STH1665 PF00154 recA bacterial DNA recombination protein STH1666 PF02631 RecX family STH1668 PF02224 Cytidylate kinase STH167 PF17760 UvrA interaction domain STH167 PF17755 UvrA DNA-binding domain STH1670 PF00575 S1 RNA binding domain STH1671 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1672 PF01131 DNA topoisomerase STH1672 PF01751 Toprim domain STH1673 PF09861 Lactate racemase N-terminal domain STH1674 PF01070 FMN-dependent dehydrogenase STH1679 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal STH1679 PF01926 50S ribosome-binding GTPase STH1680 PF02660 Glycerol-3-phosphate acyltransferase STH1681 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus STH1681 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus STH1684 PF09547 Stage IV sporulation protein A (spore_IV_A) STH1685 PF00561 alpha/beta hydrolase fold STH1686 PF01842 ACT domain STH1686 PF13840 ACT domain STH1686 PF00696 Amino acid kinase family STH1688 PF03606 C4-dicarboxylate anaerobic carrier STH1689 PF07687 Peptidase dimerisation domain STH1689 PF01546 Peptidase family M20/M25/M40 STH169 PF04542 Sigma-70 region 2 STH169 PF08281 Sigma-70, region 4 STH1690 PF07687 Peptidase dimerisation domain STH1690 PF01546 Peptidase family M20/M25/M40 STH1691 PF02322 Cytochrome bd terminal oxidase subunit II STH1692 PF01654 Cytochrome bd terminal oxidase subunit I STH1694 PF00334 Nucleoside diphosphate kinase STH1695 PF01476 LysM domain STH1695 PF01551 Peptidase family M23 STH1696 PF01048 Phosphorylase superfamily STH1697 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain STH1697 PF05221 S-adenosyl-L-homocysteine hydrolase STH1699 PF00563 EAL domain STH1699 PF00990 Diguanylate cyclase, GGDEF domain STH1699 PF08448 PAS fold STH1703 PF01979 Amidohydrolase family STH1704 PF00005 ABC transporter STH1707 PF00248 Aldo/keto reductase family STH171 PF01541 GIY-YIG catalytic domain STH171 PF02151 UvrB/uvrC motif STH171 PF08459 UvrC Helix-hairpin-helix N-terminal STH1710 PF06133 Control of competence regulator ComK, YlbF/YmcA STH1711 PF04029 2-phosphosulpholactate phosphatase STH1713 PF13307 Helicase C-terminal domain STH1713 PF00929 Exonuclease STH1713 PF04851 Type III restriction enzyme, res subunit STH1714 PF01975 Survival protein SurE STH1715 PF02666 Phosphatidylserine decarboxylase STH1716 PF01066 CDP-alcohol phosphatidyltransferase STH172 PF01522 Polysaccharide deacetylase STH1721 PF02491 SHS2 domain inserted in FTSA STH1727 PF00730 HhH-GPD superfamily base excision DNA repair protein STH1727 PF14815 NUDIX domain STH1727 PF00633 Helix-hairpin-helix motif STH173 PF00578 AhpC/TSA family STH1730 PF01578 Cytochrome C assembly protein STH1731 PF05140 ResB-like family STH1732 PF02683 Cytochrome C biogenesis protein transmembrane region STH1733 PF00578 AhpC/TSA family STH1736 PF00717 Peptidase S24-like STH1736 PF01726 LexA DNA binding domain STH1738 PF06838 Methionine gamma-lyase STH1741 PF04542 Sigma-70 region 2 STH1741 PF08281 Sigma-70, region 4 STH1743 PF00005 ABC transporter STH1744 PF03449 Transcription elongation factor, N-terminal STH1744 PF01272 Transcription elongation factor, GreA/GreB, C-term STH1745 PF00004 ATPase family associated with various cellular activities (AAA) STH1745 PF17866 AAA lid domain STH1746 PF17209 Hfq protein STH1748 PF01119 DNA mismatch repair protein, C-terminal domain STH1748 PF08676 MutL C terminal dimerisation domain STH1755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1757 PF05188 MutS domain II STH1757 PF01624 MutS domain I STH1757 PF00488 MutS domain V STH1757 PF05190 MutS family domain IV STH1757 PF05192 MutS domain III STH1759 PF00919 Uncharacterized protein family UPF0004 STH1759 PF04055 Radical SAM superfamily STH1759 PF01938 TRAM domain STH1761 PF01641 SelR domain STH1761 PF01625 Peptide methionine sulfoxide reductase STH1762 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH1762 PF13192 Thioredoxin domain STH1765 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) STH1767 PF03466 LysR substrate binding domain STH1767 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH177 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV STH1770 PF17863 AAA lid domain STH1770 PF07726 ATPase family associated with various cellular activities (AAA) STH1773 PF02811 PHP domain STH1774 PF00883 Cytosol aminopeptidase family, catalytic domain STH1774 PF02789 Cytosol aminopeptidase family, N-terminal domain STH1775 PF01244 Membrane dipeptidase (Peptidase family M19) STH1776 PF04232 Stage V sporulation protein S (SpoVS) STH1777 PF13277 YmdB-like protein STH1779 PF01966 HD domain STH1779 PF00013 KH domain STH1779 PF12072 Domain of unknown function (DUF3552) STH1782 PF00005 ABC transporter STH1782 PF17912 MalK OB fold domain STH1782 PF03459 TOBE domain STH1783 PF01479 S4 domain STH1783 PF00849 RNA pseudouridylate synthase STH1786 PF07670 Nucleoside recognition STH1787 PF07670 Nucleoside recognition STH1788 PF06153 Cyclic-di-AMP receptor STH1789 PF01522 Polysaccharide deacetylase STH179 PF00293 NUDIX domain STH1790 PF00704 Glycosyl hydrolases family 18 STH1794 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1797 PF01068 ATP dependent DNA ligase domain STH1797 PF04679 ATP dependent DNA ligase C terminal region STH1797 PF13298 DNA polymerase Ligase (LigD) STH1798 PF02735 Ku70/Ku80 beta-barrel domain STH1799 PF09579 Sporulation protein YtfJ (Spore_YtfJ) STH18 PF00491 Arginase family STH1802 PF04079 Segregation and condensation complex subunit ScpB STH1803 PF02616 Segregation and condensation protein ScpA STH1804 PF02163 Peptidase family M50 STH1805 PF01966 HD domain STH1805 PF12627 Probable RNA and SrmB- binding site of polymerase A STH1805 PF01743 Poly A polymerase head domain STH1806 PF00731 AIR carboxylase STH1807 PF02222 ATP-grasp domain STH1807 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain STH1808 PF00005 ABC transporter STH1808 PF12704 MacB-like periplasmic core domain STH1808 PF02687 FtsX-like permease family STH181 PF04542 Sigma-70 region 2 STH181 PF08281 Sigma-70, region 4 STH1810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain STH1810 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain STH1811 PF14097 Stage V sporulation protein AE1 STH1812 PF04542 Sigma-70 region 2 STH1812 PF04539 Sigma-70 region 3 STH1812 PF04545 Sigma-70, region 4 STH1813 PF13581 Histidine kinase-like ATPase domain STH1814 PF01740 STAS domain STH1815 PF07943 Penicillin-binding protein 5, C-terminal domain STH1815 PF00768 D-alanyl-D-alanine carboxypeptidase STH1816 PF00005 ABC transporter STH1820 PF01676 Metalloenzyme superfamily STH1821 PF02899 Phage integrase, N-terminal SAM-like domain STH1821 PF00589 Phage integrase family STH1822 PF01262 Alanine dehydrogenase/PNT, C-terminal domain STH1822 PF05222 Alanine dehydrogenase/PNT, N-terminal domain STH1825 PF00293 NUDIX domain STH1826 PF00871 Acetokinase family STH1827 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase STH1827 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain STH1828 PF01515 Phosphate acetyl/butaryl transferase STH1829 PF00871 Acetokinase family STH1830 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase STH1830 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain STH1831 PF00989 PAS fold STH1831 PF02954 Bacterial regulatory protein, Fis family STH1831 PF00158 Sigma-54 interaction domain STH1832 PF08769 Sporulation initiation factor Spo0A C terminal STH1832 PF00072 Response regulator receiver domain STH1833 PF05580 SpoIVB peptidase S55 STH1833 PF17820 PDZ domain STH1835 PF02463 RecF/RecN/SMC N terminal domain STH1836 PF02863 Arginine repressor, C-terminal domain STH1836 PF01316 Arginine repressor, DNA binding domain STH1837 PF01513 ATP-NAD kinase STH1841 PF01728 FtsJ-like methyltransferase STH1841 PF01479 S4 domain STH1842 PF13292 1-deoxy-D-xylulose-5-phosphate synthase STH1842 PF02780 Transketolase, C-terminal domain STH1842 PF02779 Transketolase, pyrimidine binding domain STH1844 PF00348 Polyprenyl synthetase STH1845 PF02609 Exonuclease VII small subunit STH1847 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain STH1847 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain STH1848 PF00814 Glycoprotease family STH1849 PF01029 NusB family STH1852 PF03780 Asp23 family, cell envelope-related function STH1853 PF01522 Polysaccharide deacetylase STH1857 PF09581 Stage III sporulation protein AF (Spore_III_AF) STH1858 PF09546 Stage III sporulation protein AE (spore_III_AE) STH1859 PF06686 Stage III sporulation protein AC/AD protein family STH186 PF03668 P-loop ATPase protein family STH1860 PF06686 Stage III sporulation protein AC/AD protein family STH1864 PF08207 Elongation factor P (EF-P) KOW-like domain STH1864 PF01132 Elongation factor P (EF-P) OB domain STH1864 PF09285 Elongation factor P, C-terminal STH1865 PF00557 Metallopeptidase family M24 STH1865 PF01321 Creatinase/Prolidase N-terminal domain STH1866 PF01220 Dehydroquinase class II STH1868 PF01694 Rhomboid family STH187 PF01933 Uncharacterised protein family UPF0052 STH1872 PF00155 Aminotransferase class I and II STH1873 PF00107 Zinc-binding dehydrogenase STH1873 PF08240 Alcohol dehydrogenase GroES-like domain STH1874 PF13426 PAS domain STH1874 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH1874 PF08447 PAS fold STH1875 PF00106 short chain dehydrogenase STH1876 PF03061 Thioesterase superfamily STH1879 PF00950 ABC 3 transport family STH188 PF00596 Class II Aldolase and Adducin N-terminal domain STH1880 PF00005 ABC transporter STH1881 PF01297 Zinc-uptake complex component A periplasmic STH1881 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment STH1882 PF01475 Ferric uptake regulator family STH1883 PF03816 Cell envelope-related transcriptional attenuator domain STH1884 PF02810 SEC-C motif STH1885 PF14579 Helix-hairpin-helix motif STH1885 PF02811 PHP domain STH1885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain STH1885 PF07733 Bacterial DNA polymerase III alpha NTPase domain STH189 PF02650 WhiA C-terminal HTH domain STH189 PF10298 WhiA N-terminal LAGLIDADG-like domain STH189 PF14527 WhiA LAGLIDADG-like domain STH1890 PF01613 Flavin reductase like domain STH1891 PF00849 RNA pseudouridylate synthase STH1892 PF00571 CBS domain STH1893 PF03816 Cell envelope-related transcriptional attenuator domain STH1894 PF02416 mttA/Hcf106 family STH19 PF00750 tRNA synthetases class I (R) STH19 PF05746 DALR anticodon binding domain STH19 PF03485 Arginyl tRNA synthetase N terminal domain STH190 PF00348 Polyprenyl synthetase STH1900 PF03576 Peptidase family S58 STH1901 PF12822 ECF transporter, substrate-specific component STH1903 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily STH1904 PF08241 Methyltransferase domain STH1908 PF11867 Domain of unknown function (DUF3387) STH1908 PF18766 SWI2/SNF2 ATPase STH1908 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) STH1909 PF01420 Type I restriction modification DNA specificity domain STH191 PF02629 CoA binding domain STH191 PF06971 Putative DNA-binding protein N-terminus STH1910 PF02384 N-6 DNA Methylase STH1912 PF01979 Amidohydrolase family STH1913 PF01979 Amidohydrolase family STH1917 PF00464 Serine hydroxymethyltransferase STH1918 PF03099 Biotin/lipoate A/B protein ligase family STH1919 PF02347 Glycine cleavage system P-protein STH192 PF02457 DisA bacterial checkpoint controller nucleotide-binding STH1920 PF02347 Glycine cleavage system P-protein STH1921 PF01597 Glycine cleavage H-protein STH1922 PF01571 Aminomethyltransferase folate-binding domain STH1922 PF08669 Glycine cleavage T-protein C-terminal barrel domain STH1925 PF00155 Aminotransferase class I and II STH1926 PF02654 Cobalamin-5-phosphate synthase STH1927 PF03186 CobD/Cbib protein STH1928 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase STH1929 PF01497 Periplasmic binding protein STH1932 PF07685 CobB/CobQ-like glutamine amidotransferase domain STH1932 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain STH1933 PF00005 ABC transporter STH1934 PF01032 FecCD transport family STH1936 PF13580 SIS domain STH1937 PF01979 Amidohydrolase family STH1939 PF03830 PTS system sorbose subfamily IIB component STH194 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II STH194 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III STH194 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain STH194 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I STH1940 PF03610 PTS system fructose IIA component STH1940 PF03830 PTS system sorbose subfamily IIB component STH1941 PF03613 PTS system mannose/fructose/sorbose family IID component STH1946 PF00180 Isocitrate/isopropylmalate dehydrogenase STH1947 PF04227 Indigoidine synthase A like protein STH1948 PF01761 3-dehydroquinate synthase STH1949 PF01202 Shikimate kinase STH1950 PF01264 Chorismate synthase STH1952 PF08501 Shikimate dehydrogenase substrate binding domain STH1952 PF01488 Shikimate / quinate 5-dehydrogenase STH1952 PF18317 Shikimate 5'-dehydrogenase C-terminal domain STH1956 PF00528 Binding-protein-dependent transport system inner membrane component STH1958 PF04545 Sigma-70, region 4 STH1958 PF04542 Sigma-70 region 2 STH196 PF01380 SIS domain STH1960 PF00005 ABC transporter STH1963 PF00583 Acetyltransferase (GNAT) family STH1968 PF00367 phosphotransferase system, EIIB STH1968 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 STH1970 PF00005 ABC transporter STH1971 PF00528 Binding-protein-dependent transport system inner membrane component STH1972 PF17854 FtsK alpha domain STH1972 PF01580 FtsK/SpoIIIE family STH1972 PF09397 Ftsk gamma domain STH1973 PF13673 Acetyltransferase (GNAT) domain STH1974 PF00664 ABC transporter transmembrane region STH1974 PF00005 ABC transporter STH1975 PF00664 ABC transporter transmembrane region STH1975 PF00005 ABC transporter STH1976 PF01145 SPFH domain / Band 7 family STH1977 PF12221 Bacterial membrane protein N terminal STH1977 PF01145 SPFH domain / Band 7 family STH1979 PF03167 Uracil DNA glycosylase superfamily STH198 PF03951 Glutamine synthetase, beta-Grasp domain STH198 PF00120 Glutamine synthetase, catalytic domain STH1980 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH1981 PF02535 ZIP Zinc transporter STH1982 PF00704 Glycosyl hydrolases family 18 STH1982 PF01476 LysM domain STH1983 PF01238 Phosphomannose isomerase type I STH1984 PF13183 4Fe-4S dicluster domain STH1984 PF02754 Cysteine-rich domain STH1985 PF00890 FAD binding domain STH1986 PF01266 FAD dependent oxidoreductase STH1986 PF04324 BFD-like [2Fe-2S] binding domain STH1988 PF00682 HMGL-like STH1988 PF08502 LeuA allosteric (dimerisation) domain STH199 PF03741 Integral membrane protein TerC family STH1990 PF00106 short chain dehydrogenase STH1991 PF00905 Penicillin binding protein transpeptidase domain STH1992 PF02618 YceG-like family STH1993 PF06949 Protein of unknown function (DUF1292) STH1994 PF03652 Holliday junction resolvase STH1998 PF06135 IreB regulatory phosphoprotein STH2 PF00712 DNA polymerase III beta subunit, N-terminal domain STH2 PF02767 DNA polymerase III beta subunit, central domain STH2 PF02768 DNA polymerase III beta subunit, C-terminal domain STH20 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2000 PF02272 DHHA1 domain STH2000 PF01411 tRNA synthetases class II (A) STH2000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain STH2002 PF04542 Sigma-70 region 2 STH2002 PF04539 Sigma-70 region 3 STH2002 PF04545 Sigma-70, region 4 STH2006 PF00512 His Kinase A (phospho-acceptor) domain STH2006 PF16736 Single Cache-like STH2006 PF00989 PAS fold STH2006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2007 PF00486 Transcriptional regulatory protein, C terminal STH2007 PF00072 Response regulator receiver domain STH2011 PF02742 Iron dependent repressor, metal binding and dimerisation domain STH2011 PF01325 Iron dependent repressor, N-terminal DNA binding domain STH2012 PF07690 Major Facilitator Superfamily STH2013 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term STH2014 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2015 PF00005 ABC transporter STH2015 PF00664 ABC transporter transmembrane region STH2016 PF00664 ABC transporter transmembrane region STH2016 PF00005 ABC transporter STH202 PF03862 SpoVAC/SpoVAEB sporulation membrane protein STH2021 PF00144 Beta-lactamase STH2023 PF16658 Class II release factor RF3, C-terminal domain STH2023 PF03144 Elongation factor Tu domain 2 STH2023 PF00009 Elongation factor Tu GTP binding domain STH2025 PF00595 PDZ domain STH2026 PF00293 NUDIX domain STH2026 PF09297 NADH pyrophosphatase zinc ribbon domain STH2029 PF01351 Ribonuclease HII STH203 PF07451 Stage V sporulation protein AD (SpoVAD) STH2030 PF02698 DUF218 domain STH2034 PF00005 ABC transporter STH2035 PF01458 Uncharacterized protein family (UPF0051) STH2036 PF00266 Aminotransferase class-V STH2037 PF01592 NifU-like N terminal domain STH2038 PF01458 Uncharacterized protein family (UPF0051) STH2039 PF00355 Rieske [2Fe-2S] domain STH204 PF03862 SpoVAC/SpoVAEB sporulation membrane protein STH2040 PF01883 Iron-sulfur cluster assembly protein STH2043 PF08281 Sigma-70, region 4 STH2043 PF04542 Sigma-70 region 2 STH2045 PF12146 Serine aminopeptidase, S33 STH2046 PF00072 Response regulator receiver domain STH2046 PF00486 Transcriptional regulatory protein, C terminal STH2047 PF00034 Cytochrome c STH2047 PF03150 Di-haem cytochrome c peroxidase STH2049 PF00465 Iron-containing alcohol dehydrogenase STH205 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain STH205 PF02777 Iron/manganese superoxide dismutases, C-terminal domain STH2055 PF13247 4Fe-4S dicluster domain STH2056 PF01568 Molydopterin dinucleotide binding domain STH2056 PF00384 Molybdopterin oxidoreductase STH2056 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH2057 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2061 PF00936 BMC domain STH2062 PF06277 Ethanolamine utilisation protein EutA STH2063 PF06751 Ethanolamine ammonia lyase large subunit (EutB) STH2066 PF07690 Major Facilitator Superfamily STH2068 PF01008 Initiation factor 2 subunit family STH2072 PF12833 Helix-turn-helix domain STH2072 PF06445 GyrI-like small molecule binding domain STH2075 PF00005 ABC transporter STH2076 PF03551 Transcriptional regulator PadR-like family STH2077 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) STH208 PF01921 tRNA synthetases class I (K) STH2081 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH2081 PF01568 Molydopterin dinucleotide binding domain STH2081 PF00384 Molybdopterin oxidoreductase STH2083 PF13247 4Fe-4S dicluster domain STH2087 PF00072 Response regulator receiver domain STH2087 PF02954 Bacterial regulatory protein, Fis family STH2087 PF00158 Sigma-54 interaction domain STH2088 PF00989 PAS fold STH2088 PF13188 PAS domain STH2088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2088 PF00512 His Kinase A (phospho-acceptor) domain STH2088 PF13426 PAS domain STH2093 PF01040 UbiA prenyltransferase family STH2094 PF02630 SCO1/SenC STH2097 PF00115 Cytochrome C and Quinol oxidase polypeptide I STH2098 PF00510 Cytochrome c oxidase subunit III STH21 PF01740 STAS domain STH21 PF00916 Sulfate permease family STH2100 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) STH2101 PF00326 Prolyl oligopeptidase family STH2102 PF00326 Prolyl oligopeptidase family STH2105 PF03845 Spore germination protein STH2106 PF03323 Bacillus/Clostridium GerA spore germination protein STH2107 PF12679 ABC-2 family transporter protein STH2108 PF00005 ABC transporter STH2111 PF00892 EamA-like transporter family STH2115 PF00694 Aconitase C-terminal domain STH2116 PF00330 Aconitase family (aconitate hydratase) STH2117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH2117 PF03466 LysR substrate binding domain STH212 PF00378 Enoyl-CoA hydratase/isomerase STH2120 PF01699 Sodium/calcium exchanger protein STH2121 PF02779 Transketolase, pyrimidine binding domain STH2121 PF02780 Transketolase, C-terminal domain STH2121 PF00456 Transketolase, thiamine diphosphate binding domain STH2123 PF13167 GTP-binding GTPase N-terminal STH2123 PF01926 50S ribosome-binding GTPase STH2123 PF16360 GTP-binding GTPase Middle Region STH2125 PF07859 alpha/beta hydrolase fold STH2127 PF00912 Transglycosylase STH2127 PF00905 Penicillin binding protein transpeptidase domain STH213 PF00378 Enoyl-CoA hydratase/isomerase STH2131 PF03793 PASTA domain STH2131 PF03717 Penicillin-binding Protein dimerisation domain STH2131 PF00905 Penicillin binding protein transpeptidase domain STH2132 PF01551 Peptidase family M23 STH2132 PF08460 Bacterial SH3 domain STH2133 PF01205 Uncharacterized protein family UPF0029 STH2133 PF09186 Domain of unknown function (DUF1949) STH2135 PF00990 Diguanylate cyclase, GGDEF domain STH2137 PF07664 Ferrous iron transport protein B C terminus STH2137 PF17910 FeoB cytosolic helical domain STH2137 PF02421 Ferrous iron transport protein B STH2137 PF07670 Nucleoside recognition STH2139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2139 PF07730 Histidine kinase STH214 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain STH214 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain STH214 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain STH2140 PF00196 Bacterial regulatory proteins, luxR family STH2140 PF00072 Response regulator receiver domain STH2141 PF09335 SNARE associated Golgi protein STH2144 PF01966 HD domain STH2144 PF00072 Response regulator receiver domain STH2145 PF01966 HD domain STH2145 PF11871 Domain of unknown function (DUF3391) STH2149 PF01022 Bacterial regulatory protein, arsR family STH2150 PF00293 NUDIX domain STH2152 PF08331 Domain of unknown function (DUF1730) STH2153 PF04055 Radical SAM superfamily STH2153 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family STH2155 PF01048 Phosphorylase superfamily STH2157 PF02361 Cobalt transport protein STH2158 PF00005 ABC transporter STH2159 PF00005 ABC transporter STH216 PF11146 Protein of unknown function (DUF2905) STH2160 PF02817 e3 binding domain STH2160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) STH2160 PF00364 Biotin-requiring enzyme STH2161 PF02779 Transketolase, pyrimidine binding domain STH2161 PF02780 Transketolase, C-terminal domain STH2162 PF00676 Dehydrogenase E1 component STH2163 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH2163 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain STH2164 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain STH2164 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain STH2166 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain STH2168 PF01522 Polysaccharide deacetylase STH2172 PF06826 Predicted Permease Membrane Region STH2172 PF02080 TrkA-C domain STH2173 PF12705 PD-(D/E)XK nuclease superfamily STH2173 PF00580 UvrD/REP helicase N-terminal domain STH2173 PF13361 UvrD-like helicase C-terminal domain STH2174 PF13361 UvrD-like helicase C-terminal domain STH2174 PF12705 PD-(D/E)XK nuclease superfamily STH2175 PF13476 AAA domain STH2176 PF12320 Type 5 capsule protein repressor C-terminal domain STH2176 PF00149 Calcineurin-like phosphoesterase STH2179 PF13416 Bacterial extracellular solute-binding protein STH218 PF00005 ABC transporter STH2180 PF00528 Binding-protein-dependent transport system inner membrane component STH2181 PF00528 Binding-protein-dependent transport system inner membrane component STH2182 PF02436 Conserved carboxylase domain STH2182 PF00682 HMGL-like STH2182 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain STH2182 PF00364 Biotin-requiring enzyme STH2182 PF00289 Biotin carboxylase, N-terminal domain STH2182 PF02785 Biotin carboxylase C-terminal domain STH2184 PF07739 TipAS antibiotic-recognition domain STH2184 PF13411 MerR HTH family regulatory protein STH2185 PF01430 Hsp33 protein STH2187 PF06480 FtsH Extracellular STH2187 PF01434 Peptidase family M41 STH2187 PF17862 AAA+ lid domain STH2187 PF00004 ATPase family associated with various cellular activities (AAA) STH2189 PF00440 Bacterial regulatory proteins, tetR family STH2189 PF17934 Tetracyclin repressor-like, C-terminal domain STH219 PF17820 PDZ domain STH219 PF13180 PDZ domain STH2190 PF00501 AMP-binding enzyme STH2190 PF13193 AMP-binding enzyme C-terminal domain STH2191 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III STH2191 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal STH2193 PF00005 ABC transporter STH2193 PF12399 Branched-chain amino acid ATP-binding cassette transporter STH2194 PF00005 ABC transporter STH2195 PF02653 Branched-chain amino acid transport system / permease component STH2197 PF06452 Carbohydrate family 9 binding domain-like STH2197 PF02018 Carbohydrate binding domain STH2197 PF00331 Glycosyl hydrolase family 10 STH2197 PF00395 S-layer homology domain STH2198 PF01734 Patatin-like phospholipase STH22 PF01381 Helix-turn-helix STH22 PF02560 Cyanate lyase C-terminal domain STH2206 PF02625 XdhC and CoxI family STH2206 PF13478 XdhC Rossmann domain STH2208 PF07690 Major Facilitator Superfamily STH2210 PF00005 ABC transporter STH2222 PF04143 Sulphur transport STH2229 PF01970 Tripartite tricarboxylate transporter TctA family STH2231 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain STH2231 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain STH2232 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain STH2232 PF01842 ACT domain STH2232 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain STH2233 PF00465 Iron-containing alcohol dehydrogenase STH2235 PF04166 Pyridoxal phosphate biosynthetic protein PdxA STH2236 PF04166 Pyridoxal phosphate biosynthetic protein PdxA STH2237 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2244 PF00872 Transposase, Mutator family STH2246 PF00872 Transposase, Mutator family STH225 PF08769 Sporulation initiation factor Spo0A C terminal STH225 PF00072 Response regulator receiver domain STH2250 PF00005 ABC transporter STH2255 PF00440 Bacterial regulatory proteins, tetR family STH226 PF00860 Permease family STH2261 PF01555 DNA methylase STH2261 PF18755 Restriction Enzyme Adenine Methylase Associated STH2263 PF00872 Transposase, Mutator family STH2265 PF00665 Integrase core domain STH2265 PF09299 Mu transposase, C-terminal STH2266 PF13401 AAA domain STH2266 PF01471 Putative peptidoglycan binding domain STH2271 PF14480 DNA polymerase III polC-type N-terminus I STH2271 PF01336 OB-fold nucleic acid binding domain STH2271 PF14579 Helix-hairpin-helix motif STH2271 PF17657 Bacterial DNA polymerase III alpha subunit finger domain STH2271 PF07733 Bacterial DNA polymerase III alpha NTPase domain STH2271 PF11490 DNA polymerase III polC-type N-terminus II STH2271 PF02811 PHP domain STH2271 PF00929 Exonuclease STH2279 PF00872 Transposase, Mutator family STH2280 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2281 PF14693 Ribosomal protein TL5, C-terminal domain STH2281 PF01386 Ribosomal L25p family STH2286 PF00665 Integrase core domain STH2287 PF01695 IstB-like ATP binding protein STH2289 PF00872 Transposase, Mutator family STH229 PF00909 Ammonium Transporter Family STH2293 PF00271 Helicase conserved C-terminal domain STH2293 PF09369 Domain of unknown function (DUF1998) STH2293 PF00270 DEAD/DEAH box helicase STH2294 PF14693 Ribosomal protein TL5, C-terminal domain STH2294 PF01386 Ribosomal L25p family STH2297 PF04143 Sulphur transport STH2298 PF08220 DeoR-like helix-turn-helix domain STH2298 PF00455 DeoR C terminal sensor domain STH2299 PF17042 Nucleotide-binding C-terminal domain STH2299 PF07005 Sugar-binding N-terminal domain STH230 PF00310 Glutamine amidotransferases class-II STH230 PF04898 Glutamate synthase central domain STH230 PF01493 GXGXG motif STH230 PF01645 Conserved region in glutamate synthase STH2300 PF04166 Pyridoxal phosphate biosynthetic protein PdxA STH2301 PF02447 GntP family permease STH2305 PF01202 Shikimate kinase STH2308 PF03611 PTS system sugar-specific permease component STH2309 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit STH231 PF00733 Asparagine synthase STH231 PF13537 Glutamine amidotransferase domain STH2310 PF02780 Transketolase, C-terminal domain STH2310 PF02779 Transketolase, pyrimidine binding domain STH2311 PF00456 Transketolase, thiamine diphosphate binding domain STH2312 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 STH2312 PF00874 PRD domain STH2312 PF08279 HTH domain STH2312 PF05043 Mga helix-turn-helix domain STH2315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH2316 PF08279 HTH domain STH2316 PF13280 WYL domain STH2319 PF06224 Winged helix DNA-binding domain STH2321 PF16177 Acetyl-coenzyme A synthetase N-terminus STH2321 PF00501 AMP-binding enzyme STH2321 PF13193 AMP-binding enzyme C-terminal domain STH2322 PF00474 Sodium:solute symporter family STH2325 PF12706 Beta-lactamase superfamily domain STH2326 PF07722 Peptidase C26 STH2329 PF02915 Rubrerythrin STH2331 PF12800 4Fe-4S binding domain STH2331 PF13247 4Fe-4S dicluster domain STH2332 PF01568 Molydopterin dinucleotide binding domain STH2332 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH2332 PF00384 Molybdopterin oxidoreductase STH2335 PF06463 Molybdenum Cofactor Synthesis C STH2335 PF04055 Radical SAM superfamily STH2336 PF00440 Bacterial regulatory proteins, tetR family STH2336 PF08359 YsiA-like protein, C-terminal region STH2337 PF02502 Ribose/Galactose Isomerase STH2338 PF00834 Ribulose-phosphate 3 epimerase family STH2339 PF00480 ROK family STH2340 PF02653 Branched-chain amino acid transport system / permease component STH2341 PF00005 ABC transporter STH2342 PF13407 Periplasmic binding protein domain STH2343 PF00356 Bacterial regulatory proteins, lacI family STH2344 PF00180 Isocitrate/isopropylmalate dehydrogenase STH2345 PF00565 Staphylococcal nuclease homologue STH2349 PF01817 Chorismate mutase type II STH2349 PF00793 DAHP synthetase I family STH2350 PF01522 Polysaccharide deacetylase STH2350 PF14883 Hypothetical glycosyl hydrolase family 13 STH2352 PF01966 HD domain STH2353 PF00072 Response regulator receiver domain STH2353 PF00196 Bacterial regulatory proteins, luxR family STH2355 PF06745 KaiC STH2357 PF08028 Acyl-CoA dehydrogenase, C-terminal domain STH2357 PF02770 Acyl-CoA dehydrogenase, middle domain STH2357 PF02771 Acyl-CoA dehydrogenase, N-terminal domain STH2358 PF00005 ABC transporter STH2359 PF12399 Branched-chain amino acid ATP-binding cassette transporter STH2359 PF00005 ABC transporter STH236 PF00528 Binding-protein-dependent transport system inner membrane component STH2360 PF02653 Branched-chain amino acid transport system / permease component STH2361 PF13458 Periplasmic binding protein STH2362 PF01053 Cys/Met metabolism PLP-dependent enzyme STH2363 PF01053 Cys/Met metabolism PLP-dependent enzyme STH2366 PF00293 NUDIX domain STH2367 PF13419 Haloacid dehalogenase-like hydrolase STH2368 PF12697 Alpha/beta hydrolase family STH2369 PF13847 Methyltransferase domain STH237 PF00528 Binding-protein-dependent transport system inner membrane component STH2370 PF01022 Bacterial regulatory protein, arsR family STH2375 PF07943 Penicillin-binding protein 5, C-terminal domain STH2375 PF00768 D-alanyl-D-alanine carboxypeptidase STH238 PF00005 ABC transporter STH2385 PF01594 AI-2E family transporter STH239 PF00309 Sigma-54 factor, Activator interacting domain (AID) STH239 PF04963 Sigma-54 factor, core binding domain STH239 PF04552 Sigma-54, DNA binding domain STH2390 PF00266 Aminotransferase class-V STH2391 PF02082 Transcriptional regulator STH2392 PF03793 PASTA domain STH2392 PF03717 Penicillin-binding Protein dimerisation domain STH2392 PF00905 Penicillin binding protein transpeptidase domain STH2394 PF00582 Universal stress protein family STH2395 PF06491 Disulphide isomerase STH2396 PF14256 YwiC-like protein STH2398 PF00672 HAMP domain STH2398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2398 PF18698 Histidine kinase sensor domain STH2398 PF00989 PAS fold STH2398 PF00512 His Kinase A (phospho-acceptor) domain STH2399 PF00072 Response regulator receiver domain STH24 PF07730 Histidine kinase STH24 PF17200 Single Cache domain 2 STH2401 PF12002 MgsA AAA+ ATPase C terminal STH2401 PF16193 AAA C-terminal domain STH2401 PF00004 ATPase family associated with various cellular activities (AAA) STH2402 PF01170 Putative RNA methylase family UPF0020 STH2402 PF02926 THUMP domain STH2403 PF01212 Beta-eliminating lyase STH2404 PF00085 Thioredoxin STH2408 PF01230 HIT domain STH2411 PF03033 Glycosyltransferase family 28 N-terminal domain STH2415 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase STH2415 PF03033 Glycosyltransferase family 28 N-terminal domain STH2416 PF00141 Peroxidase STH2419 PF00583 Acetyltransferase (GNAT) family STH242 PF00162 Phosphoglycerate kinase STH2420 PF00583 Acetyltransferase (GNAT) family STH2421 PF01336 OB-fold nucleic acid binding domain STH2421 PF00152 tRNA synthetases class II (D, K and N) STH2421 PF02938 GAD domain STH2422 PF13393 Histidyl-tRNA synthetase STH2422 PF03129 Anticodon binding domain STH2423 PF03575 Peptidase family S51 STH2424 PF00781 Diacylglycerol kinase catalytic domain STH2425 PF04055 Radical SAM superfamily STH2427 PF01047 MarR family STH2428 PF00753 Metallo-beta-lactamase superfamily STH2430 PF02580 D-Tyr-tRNA(Tyr) deacylase STH2435 PF08439 Oligopeptidase F STH2435 PF01432 Peptidase family M3 STH2437 PF02824 TGS domain STH2437 PF13291 ACT domain STH2437 PF04607 Region found in RelA / SpoT proteins STH2438 PF00156 Phosphoribosyl transferase domain STH2439 PF02272 DHHA1 domain STH2439 PF17768 RecJ OB domain STH2439 PF10141 Single-strand DNA-specific exonuclease, C terminal domain STH2439 PF01368 DHH family STH244 PF00121 Triosephosphate isomerase STH2441 PF01078 Magnesium chelatase, subunit ChlI STH2441 PF17863 AAA lid domain STH2442 PF02355 Protein export membrane protein STH2442 PF07549 SecD/SecF GG Motif STH2443 PF02355 Protein export membrane protein STH2443 PF07549 SecD/SecF GG Motif STH2445 PF10502 Signal peptidase, peptidase S26 STH2448 PF00367 phosphotransferase system, EIIB STH2448 PF02378 Phosphotransferase system, EIIC STH2449 PF04794 YdjC-like protein STH245 PF02583 Metal-sensitive transcriptional repressor STH2450 PF02056 Family 4 glycosyl hydrolase STH2450 PF11975 Family 4 glycosyl hydrolase C-terminal domain STH2452 PF03323 Bacillus/Clostridium GerA spore germination protein STH2456 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 STH2456 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) STH2457 PF02416 mttA/Hcf106 family STH2458 PF03009 Glycerophosphoryl diester phosphodiesterase family STH2459 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH2459 PF03466 LysR substrate binding domain STH2460 PF00293 NUDIX domain STH2463 PF00441 Acyl-CoA dehydrogenase, C-terminal domain STH2463 PF02770 Acyl-CoA dehydrogenase, middle domain STH2463 PF02771 Acyl-CoA dehydrogenase, N-terminal domain STH2465 PF01642 Methylmalonyl-CoA mutase STH2465 PF02310 B12 binding domain STH247 PF00085 Thioredoxin STH2470 PF00583 Acetyltransferase (GNAT) family STH2477 PF08028 Acyl-CoA dehydrogenase, C-terminal domain STH2477 PF02770 Acyl-CoA dehydrogenase, middle domain STH2477 PF02771 Acyl-CoA dehydrogenase, N-terminal domain STH2478 PF01895 PhoU domain STH248 PF06415 BPG-independent PGAM N-terminus (iPGM_N) STH248 PF01676 Metalloenzyme superfamily STH2483 PF01883 Iron-sulfur cluster assembly protein STH2486 PF05138 Phenylacetic acid catabolic protein STH2487 PF17932 Tetracyclin repressor-like, C-terminal domain STH2487 PF00440 Bacterial regulatory proteins, tetR family STH2489 PF02447 GntP family permease STH249 PF00113 Enolase, C-terminal TIM barrel domain STH249 PF03952 Enolase, N-terminal domain STH2490 PF02595 Glycerate kinase family STH2491 PF17853 GGDEF-like domain STH2491 PF13556 PucR C-terminal helix-turn-helix domain STH2491 PF05651 Putative sugar diacid recognition STH2492 PF00188 Cysteine-rich secretory protein family STH2495 PF02673 Bacitracin resistance protein BacA STH2496 PF13361 UvrD-like helicase C-terminal domain STH2496 PF00580 UvrD/REP helicase N-terminal domain STH2498 PF01915 Glycosyl hydrolase family 3 C-terminal domain STH2498 PF00933 Glycosyl hydrolase family 3 N terminal domain STH2499 PF00111 2Fe-2S iron-sulfur cluster binding domain STH2499 PF00175 Oxidoreductase NAD-binding domain STH25 PF00196 Bacterial regulatory proteins, luxR family STH25 PF00072 Response regulator receiver domain STH250 PF03840 Preprotein translocase SecG subunit STH2500 PF02310 B12 binding domain STH2500 PF02607 B12 binding domain STH2500 PF02965 Vitamin B12 dependent methionine synthase, activation domain STH2500 PF00809 Pterin binding enzyme STH2500 PF02574 Homocysteine S-methyltransferase STH2502 PF02219 Methylenetetrahydrofolate reductase STH2502 PF02574 Homocysteine S-methyltransferase STH2503 PF01476 LysM domain STH2503 PF08525 Opacity-associated protein A N-terminal motif STH2503 PF01551 Peptidase family M23 STH2505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2505 PF00512 His Kinase A (phospho-acceptor) domain STH2506 PF00072 Response regulator receiver domain STH2506 PF00486 Transcriptional regulatory protein, C terminal STH2508 PF00248 Aldo/keto reductase family STH251 PF00561 alpha/beta hydrolase fold STH2513 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH2515 PF01209 ubiE/COQ5 methyltransferase family STH2516 PF00528 Binding-protein-dependent transport system inner membrane component STH2517 PF00005 ABC transporter STH2522 PF03746 LamB/YcsF family STH2525 PF01555 DNA methylase STH2526 PF06130 Phosphate propanoyltransferase STH2528 PF08281 Sigma-70, region 4 STH2528 PF04542 Sigma-70 region 2 STH253 PF00005 ABC transporter STH253 PF09383 NIL domain STH2532 PF00549 CoA-ligase STH2532 PF02629 CoA binding domain STH2533 PF00549 CoA-ligase STH2533 PF08442 ATP-grasp domain STH2534 PF00390 Malic enzyme, N-terminal domain STH2534 PF03949 Malic enzyme, NAD binding domain STH2536 PF05681 Fumarate hydratase (Fumerase) STH2538 PF01614 Bacterial transcriptional regulator STH2538 PF09339 IclR helix-turn-helix domain STH2539 PF00171 Aldehyde dehydrogenase family STH254 PF00528 Binding-protein-dependent transport system inner membrane component STH2540 PF00696 Amino acid kinase family STH2541 PF01434 Peptidase family M41 STH2541 PF17862 AAA+ lid domain STH2541 PF00004 ATPase family associated with various cellular activities (AAA) STH2542 PF00285 Citrate synthase, C-terminal domain STH2543 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain STH2543 PF00056 lactate/malate dehydrogenase, NAD binding domain STH2544 PF00180 Isocitrate/isopropylmalate dehydrogenase STH2546 PF01209 ubiE/COQ5 methyltransferase family STH255 PF03180 NLPA lipoprotein STH2550 PF02583 Metal-sensitive transcriptional repressor STH2551 PF07187 Protein of unknown function (DUF1405) STH2552 PF00578 AhpC/TSA family STH2553 PF17863 AAA lid domain STH2553 PF07726 ATPase family associated with various cellular activities (AAA) STH2555 PF11992 Domain of unknown function (DUF3488) STH2555 PF01841 Transglutaminase-like superfamily STH2555 PF13559 Domain of unknown function (DUF4129) STH2556 PF00288 GHMP kinases N terminal domain STH2556 PF08544 GHMP kinases C terminal STH2557 PF00291 Pyridoxal-phosphate dependent enzyme STH2558 PF02824 TGS domain STH2558 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain STH2558 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) STH2558 PF03129 Anticodon binding domain STH2559 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2562 PF03030 Inorganic H+ pyrophosphatase STH257 PF02558 Ketopantoate reductase PanE/ApbA STH257 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain STH2570 PF11588 Protein of unknown function (DUF3243) STH2571 PF03060 Nitronate monooxygenase STH2574 PF02811 PHP domain STH2575 PF00557 Metallopeptidase family M24 STH2577 PF00664 ABC transporter transmembrane region STH2577 PF00005 ABC transporter STH2584 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain STH2584 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain STH2585 PF00871 Acetokinase family STH2587 PF07943 Penicillin-binding protein 5, C-terminal domain STH2587 PF00768 D-alanyl-D-alanine carboxypeptidase STH2589 PF10079 Bacillithiol biosynthesis BshC STH259 PF00733 Asparagine synthase STH259 PF13537 Glutamine amidotransferase domain STH2590 PF00586 AIR synthase related protein, N-terminal domain STH2590 PF02769 AIR synthase related protein, C-terminal domain STH2591 PF12390 Selenocysteine synthase N terminal STH2591 PF03841 L-seryl-tRNA selenium transferase STH2593 PF01471 Putative peptidoglycan binding domain STH2593 PF01510 N-acetylmuramoyl-L-alanine amidase STH2595 PF07690 Major Facilitator Superfamily STH2597 PF02634 FdhD/NarQ family STH2599 PF03916 Polysulphide reductase, NrfD STH2600 PF13247 4Fe-4S dicluster domain STH2601 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH2601 PF00384 Molybdopterin oxidoreductase STH2601 PF01568 Molydopterin dinucleotide binding domain STH2602 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH2602 PF00384 Molybdopterin oxidoreductase STH2602 PF01568 Molydopterin dinucleotide binding domain STH2604 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH2604 PF03466 LysR substrate binding domain STH2605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family STH2605 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain STH2605 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain STH2609 PF00005 ABC transporter STH2609 PF13732 Domain of unknown function (DUF4162) STH261 PF07670 Nucleoside recognition STH2611 PF12848 ABC transporter STH2611 PF00005 ABC transporter STH2613 PF00690 Cation transporter/ATPase, N-terminus STH2613 PF00689 Cation transporting ATPase, C-terminus STH2616 PF00403 Heavy-metal-associated domain STH2618 PF02628 Cytochrome oxidase assembly protein STH2621 PF00005 ABC transporter STH2622 PF00528 Binding-protein-dependent transport system inner membrane component STH2623 PF00497 Bacterial extracellular solute-binding proteins, family 3 STH2625 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD STH2626 PF00924 Mechanosensitive ion channel STH2627 PF04069 Substrate binding domain of ABC-type glycine betaine transport system STH2628 PF00528 Binding-protein-dependent transport system inner membrane component STH2629 PF00528 Binding-protein-dependent transport system inner membrane component STH2630 PF00005 ABC transporter STH2630 PF00571 CBS domain STH2632 PF02687 FtsX-like permease family STH2632 PF02687 FtsX-like permease family STH2633 PF00005 ABC transporter STH2634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2634 PF07730 Histidine kinase STH2635 PF00196 Bacterial regulatory proteins, luxR family STH2635 PF00072 Response regulator receiver domain STH2636 PF00939 Sodium:sulfate symporter transmembrane region STH2637 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit STH2638 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit STH2639 PF00890 FAD binding domain STH2639 PF02910 Fumarate reductase flavoprotein C-term STH2640 PF13085 2Fe-2S iron-sulfur cluster binding domain STH2641 PF05681 Fumarate hydratase (Fumerase) STH2643 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) STH2647 PF07690 Major Facilitator Superfamily STH2648 PF04284 Protein of unknown function (DUF441) STH2651 PF01266 FAD dependent oxidoreductase STH2652 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH2653 PF00528 Binding-protein-dependent transport system inner membrane component STH2658 PF13673 Acetyltransferase (GNAT) domain STH2658 PF03352 Methyladenine glycosylase STH2658 PF00117 Glutamine amidotransferase class-I STH2658 PF00958 GMP synthase C terminal domain STH2658 PF13302 Acetyltransferase (GNAT) domain STH2660 PF00491 Arginase family STH2662 PF09587 Bacterial capsule synthesis protein PGA_cap STH2664 PF00005 ABC transporter STH2667 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD STH2668 PF00749 tRNA synthetases class I (E and Q), catalytic domain STH2670 PF00176 SNF2 family N-terminal domain STH2670 PF00271 Helicase conserved C-terminal domain STH2675 PF05343 M42 glutamyl aminopeptidase STH2676 PF03466 LysR substrate binding domain STH2676 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family STH2677 PF08281 Sigma-70, region 4 STH2677 PF04542 Sigma-70 region 2 STH2679 PF01367 5'-3' exonuclease, C-terminal SAM fold STH2679 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain STH2679 PF00476 DNA polymerase family A STH2680 PF13380 CoA binding domain STH2681 PF01053 Cys/Met metabolism PLP-dependent enzyme STH2682 PF00294 pfkB family carbohydrate kinase STH2683 PF01116 Fructose-bisphosphate aldolase class-II STH2684 PF00205 Thiamine pyrophosphate enzyme, central domain STH2684 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain STH2684 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain STH2685 PF00920 Dehydratase family STH2686 PF01063 Amino-transferase class IV STH2687 PF00682 HMGL-like STH2687 PF08502 LeuA allosteric (dimerisation) domain STH2688 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain STH2688 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain STH2689 PF10369 Small subunit of acetolactate synthase STH2689 PF01842 ACT domain STH2690 PF00072 Response regulator receiver domain STH2690 PF01966 HD domain STH2691 PF00072 Response regulator receiver domain STH2691 PF00486 Transcriptional regulatory protein, C terminal STH2692 PF01817 Chorismate mutase type II STH2692 PF00800 Prephenate dehydratase STH2692 PF01842 ACT domain STH2693 PF01047 MarR family STH2695 PF07690 Major Facilitator Superfamily STH2697 PF01408 Oxidoreductase family, NAD-binding Rossmann fold STH2697 PF02894 Oxidoreductase family, C-terminal alpha/beta domain STH2698 PF01695 IstB-like ATP binding protein STH2699 PF00665 Integrase core domain STH27 PF02566 OsmC-like protein STH270 PF13683 Integrase core domain STH270 PF01610 Transposase STH2701 PF00665 Integrase core domain STH2702 PF01695 IstB-like ATP binding protein STH2703 PF01695 IstB-like ATP binding protein STH2705 PF00872 Transposase, Mutator family STH2707 PF00534 Glycosyl transferases group 1 STH2711 PF16363 GDP-mannose 4,6 dehydratase STH2712 PF00534 Glycosyl transferases group 1 STH2713 PF00483 Nucleotidyl transferase STH2715 PF16363 GDP-mannose 4,6 dehydratase STH2716 PF02397 Bacterial sugar transferase STH2719 PF01471 Putative peptidoglycan binding domain STH2719 PF13401 AAA domain STH272 PF00665 Integrase core domain STH2720 PF00665 Integrase core domain STH2720 PF09299 Mu transposase, C-terminal STH2723 PF00664 ABC transporter transmembrane region STH2723 PF00005 ABC transporter STH2724 PF00005 ABC transporter STH2724 PF00664 ABC transporter transmembrane region STH2726 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2728 PF00196 Bacterial regulatory proteins, luxR family STH2728 PF00072 Response regulator receiver domain STH2729 PF07730 Histidine kinase STH2729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH2729 PF00672 HAMP domain STH273 PF01695 IstB-like ATP binding protein STH2731 PF01225 Mur ligase family, catalytic domain STH2731 PF02875 Mur ligase family, glutamate ligase domain STH2731 PF08245 Mur ligase middle domain STH2732 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2734 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I STH2734 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain STH2734 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III STH2734 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II STH2736 PF10135 Rod binding protein STH2736 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase STH2737 PF03009 Glycerophosphoryl diester phosphodiesterase family STH2738 PF01810 LysE type translocator STH2739 PF01842 ACT domain STH2739 PF00742 Homoserine dehydrogenase STH2739 PF03447 Homoserine dehydrogenase, NAD binding domain STH274 PF01695 IstB-like ATP binding protein STH2740 PF13307 Helicase C-terminal domain STH2741 PF00171 Aldehyde dehydrogenase family STH2743 PF12911 N-terminal TM domain of oligopeptide transport permease C STH2743 PF00528 Binding-protein-dependent transport system inner membrane component STH2744 PF00528 Binding-protein-dependent transport system inner membrane component STH2745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle STH275 PF00665 Integrase core domain STH2750 PF00206 Lyase STH2750 PF14698 Argininosuccinate lyase C-terminal STH2751 PF00528 Binding-protein-dependent transport system inner membrane component STH2752 PF00005 ABC transporter STH2752 PF08402 TOBE domain STH2753 PF00480 ROK family STH2753 PF01325 Iron dependent repressor, N-terminal DNA binding domain STH2754 PF00155 Aminotransferase class I and II STH2754 PF00392 Bacterial regulatory proteins, gntR family STH276 PF00872 Transposase, Mutator family STH2760 PF00317 Ribonucleotide reductase, all-alpha domain STH2760 PF02867 Ribonucleotide reductase, barrel domain STH2760 PF03477 ATP cone domain STH2761 PF03477 ATP cone domain STH2762 PF02146 Sir2 family STH2765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH2765 PF13426 PAS domain STH2765 PF08447 PAS fold STH2766 PF02272 DHHA1 domain STH2766 PF01411 tRNA synthetases class II (A) STH2766 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain STH2767 PF00361 Proton-conducting membrane transporter STH2768 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus STH2768 PF00361 Proton-conducting membrane transporter STH2769 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus STH2769 PF00361 Proton-conducting membrane transporter STH2769 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus STH2770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L STH2771 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 STH2772 PF12838 4Fe-4S dicluster domain STH2773 PF00146 NADH dehydrogenase STH2774 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit STH2775 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit STH2776 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 STH2777 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit STH2782 PF01053 Cys/Met metabolism PLP-dependent enzyme STH2786 PF00561 alpha/beta hydrolase fold STH2787 PF00730 HhH-GPD superfamily base excision DNA repair protein STH2787 PF00633 Helix-hairpin-helix motif STH2787 PF10576 Iron-sulfur binding domain of endonuclease III STH2790 PF00202 Aminotransferase class-III STH2792 PF01343 Peptidase family S49 STH2795 PF08281 Sigma-70, region 4 STH2795 PF04542 Sigma-70 region 2 STH2797 PF12146 Serine aminopeptidase, S33 STH2799 PF01408 Oxidoreductase family, NAD-binding Rossmann fold STH28 PF08281 Sigma-70, region 4 STH28 PF04542 Sigma-70 region 2 STH2805 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase STH2805 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain STH2807 PF07883 Cupin domain STH2808 PF02016 LD-carboxypeptidase N-terminal domain STH2808 PF17676 LD-carboxypeptidase C-terminal domain STH2810 PF01209 ubiE/COQ5 methyltransferase family STH2812 PF13538 UvrD-like helicase C-terminal domain STH2813 PF09334 tRNA synthetases class I (M) STH2813 PF08264 Anticodon-binding domain of tRNA STH2817 PF00535 Glycosyl transferase family 2 STH2818 PF01938 TRAM domain STH2818 PF05958 tRNA (Uracil-5-)-methyltransferase STH2819 PF01370 NAD dependent epimerase/dehydratase family STH2820 PF02934 GatB/GatE catalytic domain STH2820 PF02637 GatB domain STH2821 PF01425 Amidase STH2822 PF02686 Glu-tRNAGln amidotransferase C subunit STH2823 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH2823 PF00005 ABC transporter STH2824 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH2824 PF00005 ABC transporter STH2825 PF12826 Helix-hairpin-helix motif STH2825 PF00533 BRCA1 C Terminus (BRCT) domain STH2825 PF01653 NAD-dependent DNA ligase adenylation domain STH2825 PF03120 NAD-dependent DNA ligase OB-fold domain STH2825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain STH2826 PF13361 UvrD-like helicase C-terminal domain STH2826 PF00580 UvrD/REP helicase N-terminal domain STH2827 PF01464 Transglycosylase SLT domain STH2830 PF01835 MG2 domain STH2830 PF00207 Alpha-2-macroglobulin family STH2830 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain STH2830 PF07703 Alpha-2-macroglobulin bait region domain STH2831 PF00155 Aminotransferase class I and II STH2832 PF01502 Phosphoribosyl-AMP cyclohydrolase STH2832 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase STH2833 PF00977 Histidine biosynthesis protein STH2834 PF00977 Histidine biosynthesis protein STH2835 PF00117 Glutamine amidotransferase class-I STH2836 PF00475 Imidazoleglycerol-phosphate dehydratase STH2837 PF00815 Histidinol dehydrogenase STH2838 PF01634 ATP phosphoribosyltransferase STH2839 PF13393 Histidyl-tRNA synthetase STH2840 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) STH2841 PF00999 Sodium/hydrogen exchanger family STH2841 PF02254 TrkA-N domain STH2841 PF02080 TrkA-C domain STH2842 PF01212 Beta-eliminating lyase STH2844 PF01371 Trp repressor protein STH2847 PF08386 TAP-like protein STH2847 PF00561 alpha/beta hydrolase fold STH2848 PF00990 Diguanylate cyclase, GGDEF domain STH2848 PF08448 PAS fold STH2848 PF00563 EAL domain STH2849 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain STH2849 PF02843 Phosphoribosylglycinamide synthetase, C domain STH2849 PF02844 Phosphoribosylglycinamide synthetase, N domain STH2850 PF02142 MGS-like domain STH2850 PF01808 AICARFT/IMPCHase bienzyme STH2851 PF00293 NUDIX domain STH2851 PF09297 NADH pyrophosphatase zinc ribbon domain STH2851 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain STH2852 PF00551 Formyl transferase STH2853 PF02769 AIR synthase related protein, C-terminal domain STH2853 PF00586 AIR synthase related protein, N-terminal domain STH2854 PF00156 Phosphoribosyl transferase domain STH2855 PF02769 AIR synthase related protein, C-terminal domain STH2855 PF00586 AIR synthase related protein, N-terminal domain STH2855 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain STH2857 PF01259 SAICAR synthetase STH2860 PF10397 Adenylosuccinate lyase C-terminus STH2860 PF00206 Lyase STH2861 PF00860 Permease family STH2862 PF08543 Phosphomethylpyrimidine kinase STH2865 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III STH2870 PF09338 Glycine/sarcosine/betaine reductase component B subunits STH2871 PF00085 Thioredoxin STH2872 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH2874 PF00764 Arginosuccinate synthase STH2879 PF01145 SPFH domain / Band 7 family STH2879 PF15975 Flotillin STH2881 PF00202 Aminotransferase class-III STH2882 PF00696 Amino acid kinase family STH2884 PF00293 NUDIX domain STH2885 PF01590 GAF domain STH2885 PF02954 Bacterial regulatory protein, Fis family STH2885 PF00158 Sigma-54 interaction domain STH2886 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain STH2886 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 STH2889 PF07694 5TMR of 5TMR-LYT STH2889 PF00990 Diguanylate cyclase, GGDEF domain STH2890 PF01960 ArgJ family STH2891 PF00583 Acetyltransferase (GNAT) family STH2892 PF01118 Semialdehyde dehydrogenase, NAD binding domain STH2892 PF02774 Semialdehyde dehydrogenase, dimerisation domain STH2896 PF13419 Haloacid dehalogenase-like hydrolase STH2897 PF00118 TCP-1/cpn60 chaperonin family STH2898 PF00166 Chaperonin 10 Kd subunit STH2899 PF14791 DNA polymerase beta thumb STH2899 PF02811 PHP domain STH2899 PF14716 Helix-hairpin-helix domain STH2903 PF01967 MoaC family STH2904 PF06463 Molybdenum Cofactor Synthesis C STH2904 PF04055 Radical SAM superfamily STH2905 PF03454 MoeA C-terminal region (domain IV) STH2905 PF03453 MoeA N-terminal region (domain I and II) STH2905 PF00994 Probable molybdopterin binding domain STH2906 PF03453 MoeA N-terminal region (domain I and II) STH2906 PF03454 MoeA C-terminal region (domain IV) STH2906 PF00994 Probable molybdopterin binding domain STH291 PF14870 Photosynthesis system II assembly factor YCF48 STH2911 PF00440 Bacterial regulatory proteins, tetR family STH2911 PF13977 BetI-type transcriptional repressor, C-terminal STH2912 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain STH2912 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain STH2913 PF02803 Thiolase, C-terminal domain STH2913 PF00108 Thiolase, N-terminal domain STH2914 PF01098 Cell cycle protein STH2915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) STH2916 PF00478 IMP dehydrogenase / GMP reductase domain STH2916 PF00571 CBS domain STH2917 PF03167 Uracil DNA glycosylase superfamily STH2918 PF08245 Mur ligase middle domain STH2918 PF02875 Mur ligase family, glutamate ligase domain STH2918 PF01225 Mur ligase family, catalytic domain STH2919 PF01569 PAP2 superfamily STH292 PF01869 BadF/BadG/BcrA/BcrD ATPase family STH2920 PF14602 Hexapeptide repeat of succinyl-transferase STH2921 PF00814 Glycoprotease family STH2922 PF00075 RNase H STH2923 PF00583 Acetyltransferase (GNAT) family STH2924 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2925 PF00814 Glycoprotease family STH2926 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE STH2928 PF17674 HHH domain STH2928 PF00575 S1 RNA binding domain STH2928 PF09371 Tex-like protein N-terminal domain STH2928 PF16921 Tex protein YqgF-like domain STH2932 PF00269 Small, acid-soluble spore proteins, alpha/beta type STH2933 PF07722 Peptidase C26 STH2934 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system STH2936 PF00842 Alanine racemase, C-terminal domain STH2936 PF01168 Alanine racemase, N-terminal domain STH2937 PF03853 YjeF-related protein N-terminus STH2937 PF01256 Carbohydrate kinase STH2938 PF01648 4'-phosphopantetheinyl transferase superfamily STH2942 PF03576 Peptidase family S58 STH2943 PF05698 Bacterial trigger factor protein (TF) C-terminus STH2944 PF01883 Iron-sulfur cluster assembly protein STH2947 PF13545 Crp-like helix-turn-helix domain STH2947 PF00027 Cyclic nucleotide-binding domain STH2948 PF06071 Protein of unknown function (DUF933) STH2948 PF01926 50S ribosome-binding GTPase STH2950 PF04264 YceI-like domain STH2951 PF01557 Fumarylacetoacetate (FAA) hydrolase family STH2953 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH2957 PF09515 Thiamine transporter protein (Thia_YuaJ) STH2958 PF01471 Putative peptidoglycan binding domain STH2958 PF07486 Cell Wall Hydrolase STH2959 PF03413 Peptidase propeptide and YPEB domain STH2959 PF14620 YpeB sporulation STH296 PF00005 ABC transporter STH296 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH2962 PF04542 Sigma-70 region 2 STH2962 PF08281 Sigma-70, region 4 STH2963 PF01381 Helix-turn-helix STH2963 PF13521 AAA domain STH2964 PF01545 Cation efflux family STH2964 PF16916 Dimerisation domain of Zinc Transporter STH2965 PF08534 Redoxin STH2966 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH2966 PF12729 Four helix bundle sensory module for signal transduction STH2966 PF00672 HAMP domain STH2968 PF00580 UvrD/REP helicase N-terminal domain STH2968 PF13361 UvrD-like helicase C-terminal domain STH2968 PF00570 HRDC domain STH297 PF00005 ABC transporter STH297 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH2972 PF13677 Membrane MotB of proton-channel complex MotA/MotB STH2972 PF00691 OmpA family STH2973 PF01618 MotA/TolQ/ExbB proton channel family STH2974 PF00669 Bacterial flagellin N-terminal helical region STH2974 PF00700 Bacterial flagellin C-terminal helical region STH2976 PF02561 Flagellar protein FliS STH2977 PF02465 Flagellar hook-associated protein 2 N-terminus STH2977 PF07195 Flagellar hook-associated protein 2 C-terminus STH2977 PF07196 Flagellin hook IN motif STH2978 PF03646 FlaG protein STH2980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal STH2980 PF00460 Flagella basal body rod protein STH2984 PF04545 Sigma-70, region 4 STH2984 PF04539 Sigma-70 region 3 STH2984 PF04542 Sigma-70 region 2 STH2985 PF10609 NUBPL iron-transfer P-loop NTPase STH2986 PF00448 SRP54-type protein, GTPase domain STH2986 PF00448 SRP54-type protein, GTPase domain STH2987 PF00771 FHIPEP family STH2988 PF01312 FlhB HrpN YscU SpaS Family STH299 PF00528 Binding-protein-dependent transport system inner membrane component STH2990 PF01313 Bacterial export proteins, family 3 STH2991 PF00813 FliP family STH2993 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term STH2995 PF07559 Flagellar basal body protein FlaE STH2995 PF00460 Flagella basal body rod protein STH2995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal STH2996 PF03963 Flagellar hook capping protein - N-terminal region STH30 PF01734 Patatin-like phospholipase STH300 PF00933 Glycosyl hydrolase family 3 N terminal domain STH300 PF01915 Glycosyl hydrolase family 3 C-terminal domain STH3000 PF02874 ATP synthase alpha/beta family, beta-barrel domain STH3000 PF18269 T3SS EscN ATPase C-terminal domain STH3000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain STH3002 PF01706 FliG C-terminal domain STH3002 PF14842 FliG N-terminal domain STH3002 PF14841 FliG middle domain STH3003 PF01514 Secretory protein of YscJ/FliF family STH3003 PF08345 Flagellar M-ring protein C-terminal STH3004 PF02049 Flagellar hook-basal body complex protein FliE STH3005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal STH3005 PF00460 Flagella basal body rod protein STH3006 PF00460 Flagella basal body rod protein STH3007 PF06429 Flagellar basal body rod FlgEFG protein C-terminal STH3007 PF00460 Flagella basal body rod protein STH3009 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term STH3009 PF02154 Flagellar motor switch protein FliM STH301 PF02585 GlcNAc-PI de-N-acetylase STH3010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain STH3010 PF02770 Acyl-CoA dehydrogenase, middle domain STH3010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain STH3011 PF02803 Thiolase, C-terminal domain STH3011 PF00108 Thiolase, N-terminal domain STH3012 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain STH3012 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain STH3012 PF00378 Enoyl-CoA hydratase/isomerase STH3013 PF01012 Electron transfer flavoprotein domain STH3013 PF00766 Electron transfer flavoprotein FAD-binding domain STH3014 PF01012 Electron transfer flavoprotein domain STH3015 PF00440 Bacterial regulatory proteins, tetR family STH3015 PF08359 YsiA-like protein, C-terminal region STH3016 PF00501 AMP-binding enzyme STH3016 PF13193 AMP-binding enzyme C-terminal domain STH3019 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain STH3019 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain STH302 PF00144 Beta-lactamase STH3022 PF02653 Branched-chain amino acid transport system / permease component STH3023 PF00005 ABC transporter STH303 PF07075 Protein of unknown function (DUF1343) STH3031 PF04542 Sigma-70 region 2 STH3031 PF08281 Sigma-70, region 4 STH3035 PF00180 Isocitrate/isopropylmalate dehydrogenase STH3037 PF01209 ubiE/COQ5 methyltransferase family STH3038 PF00265 Thymidine kinase STH3039 PF01520 N-acetylmuramoyl-L-alanine amidase STH3039 PF08239 Bacterial SH3 domain STH3040 PF00380 Ribosomal protein S9/S16 STH3041 PF00572 Ribosomal protein L13 STH3042 PF01416 tRNA pseudouridine synthase STH3043 PF02361 Cobalt transport protein STH3044 PF00005 ABC transporter STH3045 PF00005 ABC transporter STH3046 PF01196 Ribosomal protein L17 STH3047 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain STH3047 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain STH3047 PF01000 RNA polymerase Rpb3/RpoA insert domain STH3048 PF00163 Ribosomal protein S4/S9 N-terminal domain STH3048 PF01479 S4 domain STH3049 PF00411 Ribosomal protein S11 STH305 PF02371 Transposase IS116/IS110/IS902 family STH305 PF01548 Transposase STH3050 PF00416 Ribosomal protein S13/S18 STH3051 PF00444 Ribosomal protein L36 STH3052 PF01176 Translation initiation factor 1A / IF-1 STH3054 PF05191 Adenylate kinase, active site lid STH3055 PF00344 SecY translocase STH3056 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A STH3057 PF00327 Ribosomal protein L30p/L7e STH3058 PF03719 Ribosomal protein S5, C-terminal domain STH3058 PF00333 Ribosomal protein S5, N-terminal domain STH3059 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast STH3060 PF00347 Ribosomal protein L6 STH3061 PF00410 Ribosomal protein S8 STH3062 PF00253 Ribosomal protein S14p/S29e STH3063 PF00281 Ribosomal protein L5 STH3063 PF00673 ribosomal L5P family C-terminus STH3064 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 STH3064 PF00467 KOW motif STH3065 PF00238 Ribosomal protein L14p/L23e STH3066 PF00366 Ribosomal protein S17 STH3067 PF00831 Ribosomal L29 protein STH3068 PF00252 Ribosomal protein L16p/L10e STH3069 PF07650 KH domain STH3069 PF00189 Ribosomal protein S3, C-terminal domain STH3070 PF00237 Ribosomal protein L22p/L17e STH3071 PF00203 Ribosomal protein S19 STH3072 PF00181 Ribosomal Proteins L2, RNA binding domain STH3072 PF03947 Ribosomal Proteins L2, C-terminal domain STH3073 PF00276 Ribosomal protein L23 STH3074 PF00573 Ribosomal protein L4/L1 family STH3075 PF00297 Ribosomal protein L3 STH3076 PF00338 Ribosomal protein S10p/S20e STH3077 PF00009 Elongation factor Tu GTP binding domain STH3077 PF03143 Elongation factor Tu C-terminal domain STH3077 PF03144 Elongation factor Tu domain 2 STH3078 PF03144 Elongation factor Tu domain 2 STH3078 PF00009 Elongation factor Tu GTP binding domain STH3078 PF03764 Elongation factor G, domain IV STH3078 PF00679 Elongation factor G C-terminus STH3078 PF14492 Elongation Factor G, domain II STH3079 PF00177 Ribosomal protein S7p/S5e STH308 PF00872 Transposase, Mutator family STH3080 PF00164 Ribosomal protein S12/S23 STH3081 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family STH3082 PF05175 Methyltransferase small domain STH3084 PF04997 RNA polymerase Rpb1, domain 1 STH3084 PF00623 RNA polymerase Rpb1, domain 2 STH3084 PF04983 RNA polymerase Rpb1, domain 3 STH3084 PF05000 RNA polymerase Rpb1, domain 4 STH3084 PF04998 RNA polymerase Rpb1, domain 5 STH3085 PF10385 RNA polymerase beta subunit external 1 domain STH3085 PF00562 RNA polymerase Rpb2, domain 6 STH3085 PF04561 RNA polymerase Rpb2, domain 2 STH3085 PF04563 RNA polymerase beta subunit STH3085 PF04565 RNA polymerase Rpb2, domain 3 STH3085 PF04560 RNA polymerase Rpb2, domain 7 STH3086 PF00542 Ribosomal protein L7/L12 C-terminal domain STH3086 PF16320 Ribosomal protein L7/L12 dimerisation domain STH3087 PF00466 Ribosomal protein L10 STH3089 PF00687 Ribosomal protein L1p/L10e family STH3090 PF03946 Ribosomal protein L11, N-terminal domain STH3090 PF00298 Ribosomal protein L11, RNA binding domain STH3091 PF00467 KOW motif STH3091 PF02357 Transcription termination factor nusG STH3093 PF00471 Ribosomal protein L33 STH3094 PF02634 FdhD/NarQ family STH3096 PF00072 Response regulator receiver domain STH3096 PF00196 Bacterial regulatory proteins, luxR family STH3097 PF00672 HAMP domain STH3097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH3097 PF07730 Histidine kinase STH3098 PF02634 FdhD/NarQ family STH31 PF02954 Bacterial regulatory protein, Fis family STH31 PF13426 PAS domain STH31 PF00158 Sigma-54 interaction domain STH310 PF09704 CRISPR-associated protein (Cas_Cas5) STH3100 PF09163 Formate dehydrogenase N, transmembrane STH3100 PF13247 4Fe-4S dicluster domain STH3103 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit STH3103 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region STH3103 PF10531 SLBB domain STH3108 PF00990 Diguanylate cyclase, GGDEF domain STH3108 PF08448 PAS fold STH3110 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH3111 PF00583 Acetyltransferase (GNAT) family STH3113 PF08281 Sigma-70, region 4 STH3113 PF04542 Sigma-70 region 2 STH3114 PF04294 VanW like protein STH3115 PF00588 SpoU rRNA Methylase family STH3115 PF08032 RNA 2'-O ribose methyltransferase substrate binding STH3116 PF00186 Dihydrofolate reductase STH3117 PF00303 Thymidylate synthase STH3118 PF00636 Ribonuclease III domain STH3119 PF01406 tRNA synthetases class I (C) catalytic domain STH3119 PF09190 DALR domain STH3120 PF06426 Serine acetyltransferase, N-terminal STH3120 PF00132 Bacterial transferase hexapeptide (six repeats) STH3121 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH3122 PF02542 YgbB family STH3123 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase STH3125 PF02559 CarD-like/TRCF domain STH3127 PF02457 DisA bacterial checkpoint controller nucleotide-binding STH3127 PF00633 Helix-hairpin-helix motif STH3127 PF10635 DisA bacterial checkpoint controller linker region STH3128 PF18073 Rubredoxin metal binding domain STH3129 PF18152 DAHP synthase ferredoxin-like domain STH3129 PF00793 DAHP synthetase I family STH3131 PF00266 Aminotransferase class-V STH3133 PF00004 ATPase family associated with various cellular activities (AAA) STH3133 PF07724 AAA domain (Cdc48 subfamily) STH3133 PF17871 AAA lid domain STH3133 PF02861 Clp amino terminal domain, pathogenicity island component STH3133 PF10431 C-terminal, D2-small domain, of ClpB protein STH3134 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain STH3135 PF02151 UvrB/uvrC motif STH3136 PF17727 CtsR C-terminal dimerization domain STH3136 PF05848 CtsR N-terminal HTH domain STH3137 PF10672 S-adenosylmethionine-dependent methyltransferase STH3137 PF17785 PUA-like domain STH3140 PF14492 Elongation Factor G, domain II STH3140 PF03764 Elongation factor G, domain IV STH3140 PF00009 Elongation factor Tu GTP binding domain STH3140 PF03144 Elongation factor Tu domain 2 STH3140 PF00679 Elongation factor G C-terminus STH3141 PF13419 Haloacid dehalogenase-like hydrolase STH3142 PF04060 Putative Fe-S cluster STH3148 PF00033 Cytochrome b/b6/petB STH3153 PF00115 Cytochrome C and Quinol oxidase polypeptide I STH3158 PF01207 Dihydrouridine synthase (Dus) STH3161 PF02645 Uncharacterised protein, DegV family COG1307 STH3162 PF00072 Response regulator receiver domain STH3162 PF00196 Bacterial regulatory proteins, luxR family STH3163 PF07730 Histidine kinase STH3164 PF00330 Aconitase family (aconitate hydratase) STH3164 PF00694 Aconitase C-terminal domain STH3167 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase STH3167 PF10371 Domain of unknown function STH3167 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II STH3167 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg STH3167 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain STH3170 PF07969 Amidohydrolase family STH3171 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) STH3172 PF01098 Cell cycle protein STH3174 PF13183 4Fe-4S dicluster domain STH3174 PF13085 2Fe-2S iron-sulfur cluster binding domain STH3175 PF02910 Fumarate reductase flavoprotein C-term STH3175 PF00890 FAD binding domain STH3176 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit STH3178 PF00266 Aminotransferase class-V STH3179 PF02577 Bifunctional nuclease STH3180 PF02391 MoaE protein STH3183 PF03309 Type III pantothenate kinase STH3184 PF03309 Type III pantothenate kinase STH3185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain STH3185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain STH3186 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) STH3187 PF02152 Dihydroneopterin aldolase STH3188 PF00809 Pterin binding enzyme STH3189 PF01268 Formate--tetrahydrofolate ligase STH319 PF00326 Prolyl oligopeptidase family STH319 PF07676 WD40-like Beta Propeller Repeat STH3191 PF01979 Amidohydrolase family STH3192 PF02971 Formiminotransferase domain STH3192 PF07837 Formiminotransferase domain, N-terminal subdomain STH3193 PF01175 Urocanase Rossmann-like domain STH3193 PF17391 Urocanase N-terminal domain STH3193 PF17392 Urocanase C-terminal domain STH3194 PF00221 Aromatic amino acid lyase STH3195 PF05193 Peptidase M16 inactive domain STH3195 PF00675 Insulinase (Peptidase family M16) STH3196 PF05193 Peptidase M16 inactive domain STH3197 PF13344 Haloacid dehalogenase-like hydrolase STH3197 PF00293 NUDIX domain STH3198 PF00004 ATPase family associated with various cellular activities (AAA) STH3198 PF01434 Peptidase family M41 STH3198 PF06480 FtsH Extracellular STH3198 PF17862 AAA+ lid domain STH3199 PF11734 TilS substrate C-terminal domain STH3199 PF01171 PP-loop family STH3201 PF00994 Probable molybdopterin binding domain STH3201 PF03454 MoeA C-terminal region (domain IV) STH3201 PF03453 MoeA N-terminal region (domain I and II) STH3202 PF03205 Molybdopterin guanine dinucleotide synthesis protein B STH3208 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit STH3208 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region STH3208 PF00037 4Fe-4S binding domain STH3209 PF02256 Iron hydrogenase small subunit STH3209 PF02906 Iron only hydrogenase large subunit, C-terminal domain STH3209 PF00037 4Fe-4S binding domain STH3209 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region STH321 PF00268 Ribonucleotide reductase, small chain STH3211 PF02687 FtsX-like permease family STH3212 PF00005 ABC transporter STH3213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH3214 PF00486 Transcriptional regulatory protein, C terminal STH3214 PF00072 Response regulator receiver domain STH3215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain STH3215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain STH3217 PF08402 TOBE domain STH3217 PF00005 ABC transporter STH3218 PF00528 Binding-protein-dependent transport system inner membrane component STH322 PF03477 ATP cone domain STH322 PF00317 Ribonucleotide reductase, all-alpha domain STH322 PF02867 Ribonucleotide reductase, barrel domain STH3220 PF00072 Response regulator receiver domain STH3220 PF00196 Bacterial regulatory proteins, luxR family STH3221 PF07730 Histidine kinase STH3221 PF17200 Single Cache domain 2 STH3228 PF07873 YabP family STH3229 PF01479 S4 domain STH3230 PF00216 Bacterial DNA-binding protein STH3231 PF03819 MazG nucleotide pyrophosphohydrolase domain STH3233 PF14667 Polysaccharide biosynthesis C-terminal domain STH3233 PF01943 Polysaccharide biosynthesis protein STH3234 PF15714 Stage V sporulation protein T C-terminal, transcription factor STH3234 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin STH3235 PF02559 CarD-like/TRCF domain STH3235 PF00270 DEAD/DEAH box helicase STH3235 PF00271 Helicase conserved C-terminal domain STH3235 PF17757 UvrB interaction domain STH3235 PF03461 TRCF domain STH3237 PF07670 Nucleoside recognition STH3238 PF01195 Peptidyl-tRNA hydrolase STH3239 PF14572 Phosphoribosyl synthetase-associated domain STH3239 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase STH3240 PF12804 MobA-like NTP transferase domain STH3240 PF00132 Bacterial transferase hexapeptide (six repeats) STH3241 PF04026 SpoVG STH3243 PF13291 ACT domain STH3243 PF00291 Pyridoxal-phosphate dependent enzyme STH3244 PF00156 Phosphoribosyl transferase domain STH3244 PF09182 Bacterial purine repressor, N-terminal STH3245 PF12804 MobA-like NTP transferase domain STH3245 PF00132 Bacterial transferase hexapeptide (six repeats) STH3246 PF00288 GHMP kinases N terminal domain STH3246 PF08544 GHMP kinases C terminal STH3247 PF06257 Biofilm formation stimulator VEG STH3248 PF04308 Ribonuclease H-like STH3249 PF00398 Ribosomal RNA adenine dimethylase STH3250 PF06725 3D domain STH3250 PF01476 LysM domain STH3251 PF01026 TatD related DNase STH3252 PF08264 Anticodon-binding domain of tRNA STH3252 PF09334 tRNA synthetases class I (M) STH3252 PF01588 Putative tRNA binding domain STH3253 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin STH3253 PF18277 AbrB C-terminal domain STH3254 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases STH3255 PF04468 PSP1 C-terminal conserved region STH3257 PF06153 Cyclic-di-AMP receptor STH3258 PF02223 Thymidylate kinase STH3259 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain STH3259 PF01276 Orn/Lys/Arg decarboxylase, major domain STH3260 PF08299 Bacterial dnaA protein helix-turn-helix STH3260 PF11638 DnaA N-terminal domain STH3260 PF00308 Bacterial dnaA protein STH3262 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II STH3262 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg STH3265 PF14620 YpeB sporulation STH3266 PF01471 Putative peptidoglycan binding domain STH3266 PF07486 Cell Wall Hydrolase STH3267 PF01476 LysM domain STH3267 PF05257 CHAP domain STH3269 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain STH3269 PF01276 Orn/Lys/Arg decarboxylase, major domain STH3270 PF04239 Protein of unknown function (DUF421) STH3273 PF00440 Bacterial regulatory proteins, tetR family STH3273 PF08359 YsiA-like protein, C-terminal region STH3275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion STH3276 PF00873 AcrB/AcrD/AcrF family STH3277 PF00005 ABC transporter STH3277 PF00664 ABC transporter transmembrane region STH3278 PF00005 ABC transporter STH3278 PF00664 ABC transporter transmembrane region STH3279 PF00391 PEP-utilising enzyme, mobile domain STH3279 PF02896 PEP-utilising enzyme, TIM barrel domain STH3279 PF05524 PEP-utilising enzyme, N-terminal STH3280 PF00381 PTS HPr component phosphorylation site STH3284 PF02585 GlcNAc-PI de-N-acetylase STH3285 PF08830 Protein of unknown function (DUF1806) STH3289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH3289 PF00512 His Kinase A (phospho-acceptor) domain STH3289 PF00672 HAMP domain STH329 PF01520 N-acetylmuramoyl-L-alanine amidase STH329 PF05036 Sporulation related domain STH3290 PF00072 Response regulator receiver domain STH3290 PF00486 Transcriptional regulatory protein, C terminal STH3291 PF03932 CutC family STH3292 PF13247 4Fe-4S dicluster domain STH3292 PF12800 4Fe-4S binding domain STH3293 PF02906 Iron only hydrogenase large subunit, C-terminal domain STH3293 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region STH3293 PF00037 4Fe-4S binding domain STH3293 PF02256 Iron hydrogenase small subunit STH3294 PF12800 4Fe-4S binding domain STH3294 PF13247 4Fe-4S dicluster domain STH3295 PF01568 Molydopterin dinucleotide binding domain STH3295 PF00384 Molybdopterin oxidoreductase STH3295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH3296 PF12838 4Fe-4S dicluster domain STH3296 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH3296 PF01568 Molydopterin dinucleotide binding domain STH3296 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region STH3296 PF00384 Molybdopterin oxidoreductase STH3297 PF01226 Formate/nitrite transporter STH3299 PF00072 Response regulator receiver domain STH3299 PF00158 Sigma-54 interaction domain STH3299 PF02954 Bacterial regulatory protein, Fis family STH33 PF07690 Major Facilitator Superfamily STH3300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH3300 PF13426 PAS domain STH3300 PF08447 PAS fold STH3300 PF00989 PAS fold STH3300 PF00512 His Kinase A (phospho-acceptor) domain STH3300 PF13493 Domain of unknown function (DUF4118) STH3301 PF00149 Calcineurin-like phosphoesterase STH3303 PF02590 Predicted SPOUT methyltransferase STH3304 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) STH3307 PF00512 His Kinase A (phospho-acceptor) domain STH3307 PF00672 HAMP domain STH3307 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH3307 PF13426 PAS domain STH3308 PF00486 Transcriptional regulatory protein, C terminal STH3308 PF00072 Response regulator receiver domain STH3310 PF08858 IDEAL domain STH3310 PF08864 UPF0302 domain STH3311 PF08460 Bacterial SH3 domain STH3311 PF01551 Peptidase family M23 STH3312 PF00497 Bacterial extracellular solute-binding proteins, family 3 STH3312 PF01464 Transglycosylase SLT domain STH3313 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH3314 PF00709 Adenylosuccinate synthetase STH3315 PF03796 DnaB-like helicase C terminal domain STH3315 PF00772 DnaB-like helicase N terminal domain STH3316 PF00004 ATPase family associated with various cellular activities (AAA) STH3316 PF05362 Lon protease (S16) C-terminal proteolytic domain STH3317 PF01281 Ribosomal protein L9, N-terminal domain STH3317 PF03948 Ribosomal protein L9, C-terminal domain STH3319 PF01084 Ribosomal protein S18 STH3320 PF00436 Single-strand binding protein family STH3321 PF01250 Ribosomal protein S6 STH3325 PF06866 Protein of unknown function (DUF1256) STH3327 PF04225 Opacity-associated protein A LysM-like domain STH3327 PF01551 Peptidase family M23 STH333 PF09571 XcyI restriction endonuclease STH3332 PF17762 HTH domain found in ParB protein STH3332 PF02195 ParB-like nuclease domain STH3333 PF13614 AAA domain STH3334 PF02527 rRNA small subunit methyltransferase G STH3335 PF01134 Glucose inhibited division protein A STH3335 PF13932 GidA associated domain STH3336 PF01926 50S ribosome-binding GTPase STH3336 PF12631 MnmE helical domain STH3336 PF10396 GTP-binding protein TrmE N-terminus STH3337 PF01424 R3H domain STH3337 PF14804 Jag N-terminus STH3338 PF02096 60Kd inner membrane protein STH3339 PF01809 Putative membrane protein insertion efficiency factor STH334 PF01555 DNA methylase STH3340 PF00825 Ribonuclease P STH3341 PF00468 Ribosomal protein L34 STH338 PF00719 Inorganic pyrophosphatase STH339 PF00575 S1 RNA binding domain STH339 PF00773 RNB domain STH339 PF08206 Ribonuclease B OB domain STH339 PF17876 Cold shock domain STH340 PF01668 SmpB protein STH341 PF01047 MarR family STH342 PF01177 Asp/Glu/Hydantoin racemase STH343 PF03725 3' exoribonuclease family, domain 2 STH343 PF01138 3' exoribonuclease family, domain 1 STH344 PF01725 Ham1 family STH345 PF12850 Calcineurin-like phosphoesterase superfamily domain STH346 PF04070 Domain of unknown function (DUF378) STH348 PF00367 phosphotransferase system, EIIB STH348 PF02378 Phosphotransferase system, EIIC STH348 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 STH349 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 STH349 PF00367 phosphotransferase system, EIIB STH35 PF12544 Lysine-2,3-aminomutase STH35 PF04055 Radical SAM superfamily STH350 PF00367 phosphotransferase system, EIIB STH350 PF02378 Phosphotransferase system, EIIC STH350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 STH351 PF03123 CAT RNA binding domain STH351 PF00874 PRD domain STH352 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal STH352 PF01926 50S ribosome-binding GTPase STH353 PF06968 Biotin and Thiamin Synthesis associated domain STH353 PF04055 Radical SAM superfamily STH354 PF04055 Radical SAM superfamily STH354 PF06968 Biotin and Thiamin Synthesis associated domain STH356 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH356 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain STH357 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase STH357 PF05697 Bacterial trigger factor protein (TF) STH357 PF05698 Bacterial trigger factor protein (TF) C-terminus STH358 PF00574 Clp protease STH359 PF07724 AAA domain (Cdc48 subfamily) STH359 PF10431 C-terminal, D2-small domain, of ClpB protein STH359 PF06689 ClpX C4-type zinc finger STH360 PF00004 ATPase family associated with various cellular activities (AAA) STH360 PF05362 Lon protease (S16) C-terminal proteolytic domain STH361 PF02190 ATP-dependent protease La (LON) substrate-binding domain STH361 PF05362 Lon protease (S16) C-terminal proteolytic domain STH361 PF00004 ATPase family associated with various cellular activities (AAA) STH362 PF01926 50S ribosome-binding GTPase STH363 PF08447 PAS fold STH363 PF13426 PAS domain STH363 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH366 PF08264 Anticodon-binding domain of tRNA STH366 PF10458 Valyl tRNA synthetase tRNA binding arm STH366 PF00133 tRNA synthetases class I (I, L, M and V) STH367 PF08245 Mur ligase middle domain STH367 PF02875 Mur ligase family, glutamate ligase domain STH37 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit STH370 PF02545 Maf-like protein STH371 PF04002 RadC-like JAB domain STH375 PF03775 Septum formation inhibitor MinC, C-terminal domain STH376 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain STH377 PF03776 Septum formation topological specificity factor MinE STH379 PF02682 Carboxyltransferase domain, subdomain C and D STH38 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase STH38 PF02310 B12 binding domain STH381 PF10502 Signal peptidase, peptidase S26 STH382 PF03459 TOBE domain STH382 PF00005 ABC transporter STH383 PF00528 Binding-protein-dependent transport system inner membrane component STH384 PF12849 PBP superfamily domain STH387 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain STH389 PF01883 Iron-sulfur cluster assembly protein STH389 PF10609 NUBPL iron-transfer P-loop NTPase STH390 PF00437 Type II/IV secretion system protein STH398 PF00437 Type II/IV secretion system protein STH4 PF02463 RecF/RecN/SMC N terminal domain STH40 PF06418 CTP synthase N-terminus STH40 PF00117 Glutamine amidotransferase class-I STH404 PF05368 NmrA-like family STH408 PF03358 NADPH-dependent FMN reductase STH409 PF01790 Prolipoprotein diacylglyceryl transferase STH41 PF01966 HD domain STH411 PF00676 Dehydrogenase E1 component STH412 PF02780 Transketolase, C-terminal domain STH412 PF02779 Transketolase, pyrimidine binding domain STH413 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) STH413 PF00364 Biotin-requiring enzyme STH413 PF02817 e3 binding domain STH414 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain STH414 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH415 PF00486 Transcriptional regulatory protein, C terminal STH415 PF00072 Response regulator receiver domain STH416 PF00512 His Kinase A (phospho-acceptor) domain STH416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH416 PF00672 HAMP domain STH417 PF13180 PDZ domain STH417 PF17820 PDZ domain STH419 PF00269 Small, acid-soluble spore proteins, alpha/beta type STH421 PF02675 S-adenosylmethionine decarboxylase STH422 PF00571 CBS domain STH422 PF02163 Peptidase family M50 STH423 PF04055 Radical SAM superfamily STH423 PF02310 B12 binding domain STH426 PF00575 S1 RNA binding domain STH426 PF10150 Ribonuclease E/G family STH427 PF01266 FAD dependent oxidoreductase STH427 PF16901 C-terminal domain of alpha-glycerophosphate oxidase STH429 PF00829 Ribosomal prokaryotic L21 protein STH43 PF00395 S-layer homology domain STH430 PF04327 Cysteine protease Prp STH431 PF01016 Ribosomal L27 protein STH432 PF01926 50S ribosome-binding GTPase STH432 PF09269 Domain of unknown function (DUF1967) STH432 PF01018 GTP1/OBG STH434 PF01467 Cytidylyltransferase-like STH435 PF01966 HD domain STH437 PF00905 Penicillin binding protein transpeptidase domain STH437 PF00912 Transglycosylase STH438 PF02954 Bacterial regulatory protein, Fis family STH438 PF00158 Sigma-54 interaction domain STH438 PF00989 PAS fold STH439 PF01212 Beta-eliminating lyase STH441 PF01212 Beta-eliminating lyase STH442 PF00209 Sodium:neurotransmitter symporter family STH444 PF09334 tRNA synthetases class I (M) STH444 PF13603 Leucyl-tRNA synthetase, Domain 2 STH444 PF00133 tRNA synthetases class I (I, L, M and V) STH444 PF08264 Anticodon-binding domain of tRNA STH45 PF01695 IstB-like ATP binding protein STH451 PF01557 Fumarylacetoacetate (FAA) hydrolase family STH452 PF00664 ABC transporter transmembrane region STH452 PF00005 ABC transporter STH453 PF00664 ABC transporter transmembrane region STH453 PF00005 ABC transporter STH459 PF01261 Xylose isomerase-like TIM barrel STH462 PF01882 Protein of unknown function DUF58 STH463 PF07726 ATPase family associated with various cellular activities (AAA) STH463 PF17863 AAA lid domain STH468 PF13416 Bacterial extracellular solute-binding protein STH469 PF00528 Binding-protein-dependent transport system inner membrane component STH470 PF00528 Binding-protein-dependent transport system inner membrane component STH471 PF08402 TOBE domain STH471 PF00005 ABC transporter STH473 PF03772 Competence protein STH473 PF13567 Domain of unknown function (DUF4131) STH473 PF00753 Metallo-beta-lactamase superfamily STH476 PF01649 Ribosomal protein S20 STH478 PF00704 Glycosyl hydrolases family 18 STH478 PF01476 LysM domain STH480 PF01272 Transcription elongation factor, GreA/GreB, C-term STH480 PF03449 Transcription elongation factor, N-terminal STH482 PF03144 Elongation factor Tu domain 2 STH482 PF00009 Elongation factor Tu GTP binding domain STH482 PF06421 GTP-binding protein LepA C-terminus STH482 PF00679 Elongation factor G C-terminus STH483 PF04055 Radical SAM superfamily STH483 PF06969 HemN C-terminal domain STH485 PF01928 CYTH domain STH486 PF00206 Lyase STH486 PF14698 Argininosuccinate lyase C-terminal STH487 PF00082 Subtilase family STH488 PF00528 Binding-protein-dependent transport system inner membrane component STH489 PF00528 Binding-protein-dependent transport system inner membrane component STH490 PF00497 Bacterial extracellular solute-binding proteins, family 3 STH491 PF00005 ABC transporter STH492 PF00072 Response regulator receiver domain STH492 PF00196 Bacterial regulatory proteins, luxR family STH493 PF13185 GAF domain STH493 PF07730 Histidine kinase STH494 PF12804 MobA-like NTP transferase domain STH496 PF13344 Haloacid dehalogenase-like hydrolase STH496 PF00293 NUDIX domain STH50 PF00665 Integrase core domain STH501 PF00117 Glutamine amidotransferase class-I STH501 PF00958 GMP synthase C terminal domain STH502 PF01628 HrcA protein C terminal domain STH503 PF01025 GrpE STH504 PF00012 Hsp70 protein STH505 PF00226 DnaJ domain STH505 PF01556 DnaJ C terminal domain STH505 PF00684 DnaJ central domain STH508 PF04452 RNA methyltransferase STH51 PF00665 Integrase core domain STH510 PF02585 GlcNAc-PI de-N-acetylase STH512 PF07478 D-ala D-ala ligase C-terminus STH512 PF01820 D-ala D-ala ligase N-terminus STH513 PF01230 HIT domain STH514 PF01165 Ribosomal protein S21 STH515 PF09424 Yqey-like protein STH517 PF00994 Probable molybdopterin binding domain STH517 PF02464 Competence-damaged protein STH518 PF01568 Molydopterin dinucleotide binding domain STH518 PF00384 Molybdopterin oxidoreductase STH518 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH519 PF01972 Serine dehydrogenase proteinase STH519 PF01957 NfeD-like C-terminal, partner-binding STH52 PF01695 IstB-like ATP binding protein STH520 PF12127 SigmaW regulon antibacterial STH524 PF02645 Uncharacterised protein, DegV family COG1307 STH525 PF00152 tRNA synthetases class II (D, K and N) STH525 PF01336 OB-fold nucleic acid binding domain STH526 PF09587 Bacterial capsule synthesis protein PGA_cap STH528 PF06898 Putative stage IV sporulation protein YqfD STH529 PF02562 PhoH-like protein STH53 PF01695 IstB-like ATP binding protein STH530 PF07697 7TM-HD extracellular STH530 PF07698 7TM receptor with intracellular HD hydrolase STH530 PF01966 HD domain STH531 PF02130 Uncharacterized protein family UPF0054 STH532 PF01219 Prokaryotic diacylglycerol kinase STH533 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region STH534 PF07650 KH domain STH534 PF01926 50S ribosome-binding GTPase STH535 PF00465 Iron-containing alcohol dehydrogenase STH537 PF00704 Glycosyl hydrolases family 18 STH537 PF01476 LysM domain STH538 PF12146 Serine aminopeptidase, S33 STH539 PF03448 MgtE intracellular N domain STH539 PF01769 Divalent cation transporter STH539 PF00571 CBS domain STH54 PF09299 Mu transposase, C-terminal STH54 PF00665 Integrase core domain STH540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family STH541 PF02537 CrcB-like protein, Camphor Resistance (CrcB) STH542 PF02537 CrcB-like protein, Camphor Resistance (CrcB) STH543 PF00528 Binding-protein-dependent transport system inner membrane component STH544 PF00210 Ferritin-like domain STH547 PF00005 ABC transporter STH548 PF00005 ABC transporter STH549 PF00085 Thioredoxin STH55 PF01471 Putative peptidoglycan binding domain STH55 PF13401 AAA domain STH550 PF00296 Luciferase-like monooxygenase STH552 PF01676 Metalloenzyme superfamily STH553 PF01168 Alanine racemase, N-terminal domain STH554 PF02126 Phosphotriesterase family STH557 PF14502 Helix-turn-helix domain STH557 PF14503 YhfZ C-terminal domain STH558 PF10797 Protein of unknown function STH559 PF00155 Aminotransferase class I and II STH560 PF10941 Protein of unknown function DUF2620 STH561 PF03099 Biotin/lipoate A/B protein ligase family STH561 PF10437 Bacterial lipoate protein ligase C-terminus STH562 PF01380 SIS domain STH564 PF00188 Cysteine-rich secretory protein family STH565 PF01791 DeoC/LacD family aldolase STH566 PF00990 Diguanylate cyclase, GGDEF domain STH566 PF08448 PAS fold STH568 PF02565 Recombination protein O C terminal STH568 PF11967 Recombination protein O N terminal STH569 PF00528 Binding-protein-dependent transport system inner membrane component STH570 PF00528 Binding-protein-dependent transport system inner membrane component STH570 PF12911 N-terminal TM domain of oligopeptide transport permease C STH571 PF00528 Binding-protein-dependent transport system inner membrane component STH572 PF00528 Binding-protein-dependent transport system inner membrane component STH572 PF12911 N-terminal TM domain of oligopeptide transport permease C STH573 PF02156 Glycosyl hydrolase family 26 STH574 PF02091 Glycyl-tRNA synthetase alpha subunit STH575 PF02092 Glycyl-tRNA synthetase beta subunit STH575 PF05746 DALR anticodon binding domain STH580 PF04715 Anthranilate synthase component I, N terminal region STH580 PF00425 chorismate binding enzyme STH583 PF00676 Dehydrogenase E1 component STH584 PF02817 e3 binding domain STH584 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) STH584 PF00364 Biotin-requiring enzyme STH585 PF03618 Kinase/pyrophosphorylase STH586 PF02896 PEP-utilising enzyme, TIM barrel domain STH586 PF00391 PEP-utilising enzyme, mobile domain STH586 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain STH587 PF01807 CHC2 zinc finger STH587 PF08275 DNA primase catalytic core, N-terminal domain STH587 PF10410 DnaB-helicase binding domain of primase STH588 PF03979 Sigma-70 factor, region 1.1 STH588 PF04539 Sigma-70 region 3 STH588 PF04545 Sigma-70, region 4 STH588 PF00140 Sigma-70 factor, region 1.2 STH588 PF04542 Sigma-70 region 2 STH589 PF01274 Malate synthase STH590 PF00463 Isocitrate lyase family STH598 PF01784 NIF3 (NGG1p interacting factor 3) STH599 PF08352 Oligopeptide/dipeptide transporter, C-terminal region STH599 PF00005 ABC transporter STH6 PF00204 DNA gyrase B STH6 PF00986 DNA gyrase B subunit, carboxyl terminus STH6 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH6 PF01751 Toprim domain STH60 PF01471 Putative peptidoglycan binding domain STH60 PF17820 PDZ domain STH60 PF03572 Peptidase family S41 STH600 PF10518 TAT (twin-arginine translocation) pathway signal sequence STH600 PF00149 Calcineurin-like phosphoesterase STH602 PF00480 ROK family STH604 PF01380 SIS domain STH605 PF01979 Amidohydrolase family STH606 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase STH607 PF02687 FtsX-like permease family STH607 PF12704 MacB-like periplasmic core domain STH608 PF00005 ABC transporter STH611 PF13361 UvrD-like helicase C-terminal domain STH611 PF00580 UvrD/REP helicase N-terminal domain STH612 PF01923 Cobalamin adenosyltransferase STH616 PF00202 Aminotransferase class-III STH619 PF00501 AMP-binding enzyme STH619 PF13193 AMP-binding enzyme C-terminal domain STH62 PF00082 Subtilase family STH623 PF02754 Cysteine-rich domain STH623 PF13183 4Fe-4S dicluster domain STH623 PF02665 Nitrate reductase gamma subunit STH624 PF00753 Metallo-beta-lactamase superfamily STH627 PF03960 ArsC family STH629 PF08756 YfkB-like domain STH629 PF04055 Radical SAM superfamily STH63 PF03061 Thioesterase superfamily STH630 PF13344 Haloacid dehalogenase-like hydrolase STH630 PF00293 NUDIX domain STH631 PF08447 PAS fold STH631 PF13426 PAS domain STH631 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH632 PF00005 ABC transporter STH632 PF00664 ABC transporter transmembrane region STH633 PF00005 ABC transporter STH633 PF00664 ABC transporter transmembrane region STH635 PF00144 Beta-lactamase STH636 PF07075 Protein of unknown function (DUF1343) STH638 PF00881 Nitroreductase family STH64 PF05853 beta-keto acid cleavage enzyme STH641 PF00266 Aminotransferase class-V STH642 PF01654 Cytochrome bd terminal oxidase subunit I STH643 PF02322 Cytochrome bd terminal oxidase subunit II STH644 PF02954 Bacterial regulatory protein, Fis family STH644 PF00158 Sigma-54 interaction domain STH644 PF13188 PAS domain STH645 PF01619 Proline dehydrogenase STH646 PF00171 Aldehyde dehydrogenase family STH648 PF00005 ABC transporter STH649 PF00072 Response regulator receiver domain STH649 PF00196 Bacterial regulatory proteins, luxR family STH650 PF07730 Histidine kinase STH650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH653 PF00005 ABC transporter STH657 PF12419 SNF2 Helicase protein STH657 PF00176 SNF2 family N-terminal domain STH657 PF00271 Helicase conserved C-terminal domain STH658 PF00248 Aldo/keto reductase family STH659 PF02811 PHP domain STH659 PF01336 OB-fold nucleic acid binding domain STH659 PF07733 Bacterial DNA polymerase III alpha NTPase domain STH659 PF17657 Bacterial DNA polymerase III alpha subunit finger domain STH659 PF14579 Helix-hairpin-helix motif STH66 PF00923 Transaldolase/Fructose-6-phosphate aldolase STH660 PF00156 Phosphoribosyl transferase domain STH660 PF05139 Erythromycin esterase STH663 PF01867 CRISPR associated protein Cas1 STH664 PF18395 Cas3 C-terminal domain STH664 PF18019 HD domain STH667 PF09344 CT1975-like protein STH67 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded STH676 PF08447 PAS fold STH676 PF13426 PAS domain STH676 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH677 PF00005 ABC transporter STH677 PF02687 FtsX-like permease family STH677 PF12704 MacB-like periplasmic core domain STH68 PF01464 Transglycosylase SLT domain STH68 PF10145 Phage-related minor tail protein STH68 PF01551 Peptidase family M23 STH680 PF02374 Anion-transporting ATPase STH681 PF17886 HSP20-like domain found in ArsA STH681 PF02374 Anion-transporting ATPase STH683 PF02554 Carbon starvation protein CstA STH683 PF13722 5TM C-terminal transporter carbon starvation CstA STH686 PF01661 Macro domain STH687 PF00528 Binding-protein-dependent transport system inner membrane component STH689 PF00005 ABC transporter STH69 PF01804 Penicillin amidase STH690 PF00072 Response regulator receiver domain STH690 PF00486 Transcriptional regulatory protein, C terminal STH691 PF11808 Phosphate regulon sensor protein PhoR STH691 PF00989 PAS fold STH691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH691 PF00512 His Kinase A (phospho-acceptor) domain STH692 PF01565 FAD binding domain STH692 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain STH693 PF12729 Four helix bundle sensory module for signal transduction STH693 PF00672 HAMP domain STH693 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH694 PF00005 ABC transporter STH695 PF00005 ABC transporter STH697 PF12146 Serine aminopeptidase, S33 STH697 PF13026 Protein of unknown function (DUF3887) STH7 PF00521 DNA gyrase/topoisomerase IV, subunit A STH7 PF03989 DNA gyrase C-terminal domain, beta-propeller STH70 PF01804 Penicillin amidase STH700 PF04608 Phosphatidylglycerophosphatase A STH701 PF00158 Sigma-54 interaction domain STH702 PF00501 AMP-binding enzyme STH702 PF14535 AMP-binding enzyme C-terminal domain STH703 PF00005 ABC transporter STH703 PF12399 Branched-chain amino acid ATP-binding cassette transporter STH704 PF13193 AMP-binding enzyme C-terminal domain STH704 PF00501 AMP-binding enzyme STH705 PF02653 Branched-chain amino acid transport system / permease component STH706 PF02653 Branched-chain amino acid transport system / permease component STH706 PF11862 Domain of unknown function (DUF3382) STH708 PF00005 ABC transporter STH709 PF14535 AMP-binding enzyme C-terminal domain STH709 PF00501 AMP-binding enzyme STH71 PF01197 Ribosomal protein L31 STH710 PF02613 Nitrate reductase delta subunit STH712 PF12800 4Fe-4S binding domain STH712 PF13247 4Fe-4S dicluster domain STH713 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH713 PF00384 Molybdopterin oxidoreductase STH713 PF01568 Molydopterin dinucleotide binding domain STH718 PF05922 Peptidase inhibitor I9 STH718 PF00082 Subtilase family STH719 PF04285 Protein of unknown function (DUF444) STH72 PF07136 Protein of unknown function (DUF1385) STH720 PF02803 Thiolase, C-terminal domain STH720 PF00108 Thiolase, N-terminal domain STH722 PF00171 Aldehyde dehydrogenase family STH723 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH723 PF12729 Four helix bundle sensory module for signal transduction STH723 PF00672 HAMP domain STH724 PF04293 SpoVR like protein STH725 PF02803 Thiolase, C-terminal domain STH725 PF00108 Thiolase, N-terminal domain STH726 PF00893 Small Multidrug Resistance protein STH727 PF00563 EAL domain STH727 PF00990 Diguanylate cyclase, GGDEF domain STH727 PF03707 Bacterial signalling protein N terminal repeat STH729 PF02335 Cytochrome c552 STH73 PF00472 RF-1 domain STH73 PF03462 PCRF domain STH731 PF00072 Response regulator receiver domain STH731 PF00486 Transcriptional regulatory protein, C terminal STH732 PF00989 PAS fold STH732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH732 PF00512 His Kinase A (phospho-acceptor) domain STH734 PF00578 AhpC/TSA family STH735 PF05140 ResB-like family STH736 PF01578 Cytochrome C assembly protein STH737 PF01432 Peptidase family M3 STH737 PF08439 Oligopeptidase F STH74 PF05175 Methyltransferase small domain STH74 PF17827 PrmC N-terminal domain STH741 PF07732 Multicopper oxidase STH744 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH745 PF01895 PhoU domain STH746 PF00005 ABC transporter STH747 PF00528 Binding-protein-dependent transport system inner membrane component STH748 PF00528 Binding-protein-dependent transport system inner membrane component STH749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH749 PF00512 His Kinase A (phospho-acceptor) domain STH749 PF00989 PAS fold STH749 PF16736 Single Cache-like STH75 PF03481 Putative GTP-binding controlling metal-binding STH75 PF01300 Telomere recombination STH750 PF00072 Response regulator receiver domain STH750 PF00486 Transcriptional regulatory protein, C terminal STH751 PF12849 PBP superfamily domain STH752 PF04101 Glycosyltransferase family 28 C-terminal domain STH752 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase STH754 PF08439 Oligopeptidase F STH754 PF01432 Peptidase family M3 STH755 PF13860 FlgD Ig-like domain STH755 PF05922 Peptidase inhibitor I9 STH755 PF02225 PA domain STH755 PF00082 Subtilase family STH757 PF01554 MatE STH759 PF00005 ABC transporter STH76 PF01451 Low molecular weight phosphotyrosine protein phosphatase STH761 PF00005 ABC transporter STH762 PF00528 Binding-protein-dependent transport system inner membrane component STH763 PF00528 Binding-protein-dependent transport system inner membrane component STH764 PF12849 PBP superfamily domain STH768 PF00202 Aminotransferase class-III STH77 PF02502 Ribose/Galactose Isomerase STH770 PF00356 Bacterial regulatory proteins, lacI family STH771 PF00294 pfkB family carbohydrate kinase STH772 PF05025 RbsD / FucU transport protein family STH773 PF00005 ABC transporter STH775 PF00557 Metallopeptidase family M24 STH775 PF01321 Creatinase/Prolidase N-terminal domain STH777 PF00483 Nucleotidyl transferase STH779 PF00534 Glycosyl transferases group 1 STH779 PF13439 Glycosyltransferase Family 4 STH78 PF04260 Protein of unknown function (DUF436) STH780 PF13439 Glycosyltransferase Family 4 STH780 PF00534 Glycosyl transferases group 1 STH781 PF01370 NAD dependent epimerase/dehydratase family STH783 PF08757 CotH kinase protein STH785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain STH785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain STH785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain STH786 PF13344 Haloacid dehalogenase-like hydrolase STH788 PF08298 PrkA AAA domain STH788 PF06798 PrkA serine protein kinase C-terminal domain STH793 PF00455 DeoR C terminal sensor domain STH793 PF08220 DeoR-like helix-turn-helix domain STH794 PF00294 pfkB family carbohydrate kinase STH795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit STH795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 STH796 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit STH796 PF02378 Phosphotransferase system, EIIC STH798 PF00501 AMP-binding enzyme STH798 PF13193 AMP-binding enzyme C-terminal domain STH799 PF00005 ABC transporter STH8 PF00266 Aminotransferase class-V STH80 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region STH800 PF00005 ABC transporter STH800 PF12399 Branched-chain amino acid ATP-binding cassette transporter STH801 PF11862 Domain of unknown function (DUF3382) STH801 PF02653 Branched-chain amino acid transport system / permease component STH802 PF02653 Branched-chain amino acid transport system / permease component STH804 PF02803 Thiolase, C-terminal domain STH804 PF00108 Thiolase, N-terminal domain STH807 PF00561 alpha/beta hydrolase fold STH808 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal STH808 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III STH809 PF12697 Alpha/beta hydrolase family STH81 PF00953 Glycosyl transferase family 4 STH814 PF01048 Phosphorylase superfamily STH815 PF01048 Phosphorylase superfamily STH816 PF01008 Initiation factor 2 subunit family STH817 PF04055 Radical SAM superfamily STH818 PF04055 Radical SAM superfamily STH819 PF02621 Menaquinone biosynthesis STH82 PF02350 UDP-N-acetylglucosamine 2-epimerase STH821 PF13458 Periplasmic binding protein STH822 PF02653 Branched-chain amino acid transport system / permease component STH823 PF02653 Branched-chain amino acid transport system / permease component STH823 PF11862 Domain of unknown function (DUF3382) STH824 PF12399 Branched-chain amino acid ATP-binding cassette transporter STH824 PF00005 ABC transporter STH825 PF00005 ABC transporter STH826 PF00672 HAMP domain STH826 PF02743 Cache domain STH826 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH828 PF00557 Metallopeptidase family M24 STH828 PF01321 Creatinase/Prolidase N-terminal domain STH830 PF04307 LexA-binding, inner membrane-associated putative hydrolase STH831 PF00069 Protein kinase domain STH831 PF13191 AAA ATPase domain STH832 PF01053 Cys/Met metabolism PLP-dependent enzyme STH833 PF00206 Lyase STH833 PF10415 Fumarase C C-terminus STH834 PF01189 16S rRNA methyltransferase RsmB/F STH834 PF17126 RsmF rRNA methyltransferase first C-terminal domain STH834 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF STH836 PF01048 Phosphorylase superfamily STH837 PF00365 Phosphofructokinase STH838 PF00391 PEP-utilising enzyme, mobile domain STH838 PF00224 Pyruvate kinase, barrel domain STH838 PF02887 Pyruvate kinase, alpha/beta domain STH839 PF03061 Thioesterase superfamily STH840 PF10609 NUBPL iron-transfer P-loop NTPase STH840 PF01883 Iron-sulfur cluster assembly protein STH841 PF01987 Mitochondrial biogenesis AIM24 STH843 PF16736 Single Cache-like STH843 PF00989 PAS fold STH843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH843 PF00512 His Kinase A (phospho-acceptor) domain STH844 PF00486 Transcriptional regulatory protein, C terminal STH844 PF00072 Response regulator receiver domain STH845 PF08281 Sigma-70, region 4 STH845 PF04542 Sigma-70 region 2 STH847 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH848 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain STH848 PF00476 DNA polymerase family A STH848 PF01367 5'-3' exonuclease, C-terminal SAM fold STH849 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain STH849 PF06827 Zinc finger found in FPG and IleRS STH849 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain STH85 PF00119 ATP synthase A chain STH851 PF01121 Dephospho-CoA kinase STH856 PF00005 ABC transporter STH86 PF00137 ATP synthase subunit C STH863 PF03190 Protein of unknown function, DUF255 STH864 PF07486 Cell Wall Hydrolase STH865 PF09671 Spore coat protein (Spore_GerQ) STH867 PF01613 Flavin reductase like domain STH867 PF00258 Flavodoxin STH868 PF07690 Major Facilitator Superfamily STH87 PF00430 ATP synthase B/B' CF(0) STH872 PF01554 MatE STH874 PF00005 ABC transporter STH875 PF00528 Binding-protein-dependent transport system inner membrane component STH877 PF01464 Transglycosylase SLT domain STH877 PF01551 Peptidase family M23 STH877 PF10145 Phage-related minor tail protein STH88 PF00213 ATP synthase delta (OSCP) subunit STH880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH881 PF16177 Acetyl-coenzyme A synthetase N-terminus STH881 PF00501 AMP-binding enzyme STH881 PF13193 AMP-binding enzyme C-terminal domain STH883 PF09587 Bacterial capsule synthesis protein PGA_cap STH885 PF13847 Methyltransferase domain STH886 PF00271 Helicase conserved C-terminal domain STH886 PF00270 DEAD/DEAH box helicase STH886 PF08494 DEAD/H associated STH888 PF00005 ABC transporter STH89 PF02874 ATP synthase alpha/beta family, beta-barrel domain STH89 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain STH89 PF00306 ATP synthase alpha/beta chain, C terminal domain STH891 PF00109 Beta-ketoacyl synthase, N-terminal domain STH891 PF00550 Phosphopantetheine attachment site STH891 PF08659 KR domain STH891 PF02801 Beta-ketoacyl synthase, C-terminal domain STH891 PF00698 Acyl transferase domain STH891 PF16197 Ketoacyl-synthetase C-terminal extension STH893 PF02040 Arsenical pump membrane protein STH894 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH896 PF13237 4Fe-4S dicluster domain STH896 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit STH896 PF13375 RnfC Barrel sandwich hybrid domain STH896 PF10531 SLBB domain STH897 PF03116 NQR2, RnfD, RnfE family STH898 PF04205 FMN-binding domain STH899 PF02508 Rnf-Nqr subunit, membrane protein STH9 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain STH9 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain STH9 PF01842 ACT domain STH90 PF00231 ATP synthase STH900 PF02508 Rnf-Nqr subunit, membrane protein STH901 PF04060 Putative Fe-S cluster STH901 PF13187 4Fe-4S dicluster domain STH901 PF00037 4Fe-4S binding domain STH902 PF02424 ApbE family STH906 PF00326 Prolyl oligopeptidase family STH906 PF07676 WD40-like Beta Propeller Repeat STH907 PF08281 Sigma-70, region 4 STH907 PF04542 Sigma-70 region 2 STH91 PF02874 ATP synthase alpha/beta family, beta-barrel domain STH91 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain STH910 PF02401 LytB protein STH913 PF05193 Peptidase M16 inactive domain STH913 PF00675 Insulinase (Peptidase family M16) STH914 PF00574 Clp protease STH916 PF12800 4Fe-4S binding domain STH916 PF12838 4Fe-4S dicluster domain STH917 PF00384 Molybdopterin oxidoreductase STH917 PF04879 Molybdopterin oxidoreductase Fe4S4 domain STH917 PF01568 Molydopterin dinucleotide binding domain STH92 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain STH92 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain STH920 PF07730 Histidine kinase STH920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH920 PF05384 Sensor protein DegS STH921 PF00072 Response regulator receiver domain STH921 PF00196 Bacterial regulatory proteins, luxR family STH923 PF00196 Bacterial regulatory proteins, luxR family STH923 PF00072 Response regulator receiver domain STH924 PF00582 Universal stress protein family STH926 PF00578 AhpC/TSA family STH927 PF00578 AhpC/TSA family STH930 PF01645 Conserved region in glutamate synthase STH932 PF01361 Tautomerase enzyme STH934 PF00037 4Fe-4S binding domain STH938 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase STH938 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase STH94 PF13183 4Fe-4S dicluster domain STH94 PF02589 LUD domain STH94 PF11870 Domain of unknown function (DUF3390) STH940 PF03167 Uracil DNA glycosylase superfamily STH943 PF00202 Aminotransferase class-III STH948 PF00672 HAMP domain STH948 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain STH949 PF03749 Sugar fermentation stimulation protein RE domain STH949 PF17746 SfsA N-terminal OB domain STH95 PF02754 Cysteine-rich domain STH951 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit STH952 PF02378 Phosphotransferase system, EIIC STH954 PF00232 Glycosyl hydrolase family 1 STH955 PF00381 PTS HPr component phosphorylation site STH955 PF00391 PEP-utilising enzyme, mobile domain STH955 PF02896 PEP-utilising enzyme, TIM barrel domain STH955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 STH955 PF05524 PEP-utilising enzyme, N-terminal STH956 PF00326 Prolyl oligopeptidase family STH956 PF07676 WD40-like Beta Propeller Repeat STH958 PF01595 Cyclin M transmembrane N-terminal domain STH958 PF00571 CBS domain STH958 PF03471 Transporter associated domain STH959 PF01435 Peptidase family M48 STH96 PF02652 L-lactate permease STH960 PF00109 Beta-ketoacyl synthase, N-terminal domain STH960 PF02801 Beta-ketoacyl synthase, C-terminal domain STH961 PF00440 Bacterial regulatory proteins, tetR family STH963 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH965 PF07992 Pyridine nucleotide-disulphide oxidoreductase STH97 PF07729 FCD domain STH97 PF00392 Bacterial regulatory proteins, gntR family STH971 PF03061 Thioesterase superfamily STH976 PF00005 ABC transporter STH977 PF12704 MacB-like periplasmic core domain STH977 PF02687 FtsX-like permease family STH982 PF01925 Sulfite exporter TauE/SafE STH983 PF01521 Iron-sulphur cluster biosynthesis STH984 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) STH985 PF00753 Metallo-beta-lactamase superfamily STH986 PF07694 5TMR of 5TMR-LYT STH986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STH986 PF06580 Histidine kinase STH987 PF00072 Response regulator receiver domain STH987 PF04397 LytTr DNA-binding domain STH989 PF00768 D-alanyl-D-alanine carboxypeptidase STH989 PF07943 Penicillin-binding protein 5, C-terminal domain STH990 PF01227 GTP cyclohydrolase I STH992 PF13183 4Fe-4S dicluster domain STH992 PF02754 Cysteine-rich domain STH993 PF01565 FAD binding domain STH993 PF02913 FAD linked oxidases, C-terminal domain STH997 PF00528 Binding-protein-dependent transport system inner membrane component STH998 PF08402 TOBE domain STH998 PF00005 ABC transporter