locus-tag class description syc0001_c PF00258 Flavodoxin syc0002_c PF00421 Photosystem II protein syc0004_d PF01850 PIN domain syc0005_d PF00575 S1 RNA binding domain syc0005_d PF00773 RNB domain syc0005_d PF08206 Ribonuclease B OB domain syc0006_c PF03069 Acetamidase/Formamidase family syc0007_d PF00717 Peptidase S24-like syc0008_d PF11798 IMS family HHH motif syc0008_d PF11799 impB/mucB/samB family C-terminal domain syc0008_d PF00817 impB/mucB/samB family syc0008_d PF13438 Domain of unknown function (DUF4113) syc0010_c PF01450 Acetohydroxy acid isomeroreductase, catalytic domain syc0010_c PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain syc0011_d PF02811 PHP domain syc0012_c PF00574 Clp protease syc0013_d PF11264 Thylakoid formation protein syc0015_c PF04542 Sigma-70 region 2 syc0015_c PF00140 Sigma-70 factor, region 1.2 syc0015_c PF04545 Sigma-70, region 4 syc0015_c PF04539 Sigma-70 region 3 syc0017_d PF00132 Bacterial transferase hexapeptide (six repeats) syc0020_c PF03747 ADP-ribosylglycohydrolase syc0024_d PF02503 Polyphosphate kinase middle domain syc0024_d PF13090 Polyphosphate kinase C-terminal domain 2 syc0024_d PF17941 Polyphosphate kinase C-terminal domain 1 syc0024_d PF13089 Polyphosphate kinase N-terminal domain syc0027_c PF00403 Heavy-metal-associated domain syc0029_d PF05199 GMC oxidoreductase syc0029_d PF00732 GMC oxidoreductase syc0033_d PF00654 Voltage gated chloride channel syc0034_c PF03485 Arginyl tRNA synthetase N terminal domain syc0034_c PF00750 tRNA synthetases class I (R) syc0034_c PF05746 DALR anticodon binding domain syc0035_c PF00902 Sec-independent protein translocase protein (TatC) syc0038_d PF00246 Zinc carboxypeptidase syc0039_c PF10396 GTP-binding protein TrmE N-terminus syc0039_c PF12631 MnmE helical domain syc0039_c PF01926 50S ribosome-binding GTPase syc0041_c PF02696 Uncharacterized ACR, YdiU/UPF0061 family syc0043_d PF18698 Histidine kinase sensor domain syc0043_d PF00512 His Kinase A (phospho-acceptor) domain syc0043_d PF00672 HAMP domain syc0043_d PF00989 PAS fold syc0043_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0045_c PF00654 Voltage gated chloride channel syc0048_c PF00575 S1 RNA binding domain syc0049_d PF02633 Creatinine amidohydrolase syc0050_d PF11266 Long-chain fatty aldehyde decarbonylase syc0052_d PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit syc0053_d PF00106 short chain dehydrogenase syc0054_d PF01227 GTP cyclohydrolase I syc0055_d PF02567 Phenazine biosynthesis-like protein syc0056_d PF08486 Stage II sporulation protein syc0059_d PF00588 SpoU rRNA Methylase family syc0063_d PF02469 Fasciclin domain syc0064_c PF00395 S-layer homology domain syc0064_c PF04966 Carbohydrate-selective porin, OprB family syc0065_d PF01050 Mannose-6-phosphate isomerase syc0065_d PF00483 Nucleotidyl transferase syc0066_d PF17975 Ribonucleotide reductase alpha domain syc0067_c PF02233 NAD(P) transhydrogenase beta subunit syc0068_c PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch syc0068_c PF05222 Alanine dehydrogenase/PNT, N-terminal domain syc0068_c PF01262 Alanine dehydrogenase/PNT, C-terminal domain syc0069_c PF05222 Alanine dehydrogenase/PNT, N-terminal domain syc0069_c PF01262 Alanine dehydrogenase/PNT, C-terminal domain syc0071_d PF00468 Ribosomal protein L34 syc0072_d PF00825 Ribonuclease P syc0074_d PF02096 60Kd inner membrane protein syc0078_d PF00004 ATPase family associated with various cellular activities (AAA) syc0078_d PF17862 AAA+ lid domain syc0078_d PF06480 FtsH Extracellular syc0078_d PF01434 Peptidase family M41 syc0079_c PF02310 B12 binding domain syc0079_c PF13282 Domain of unknown function (DUF4070) syc0079_c PF04055 Radical SAM superfamily syc0080_d PF12392 Collagenase syc0080_d PF01136 Peptidase family U32 syc0082_c PF00677 Lumazine binding domain syc0089_d PF13442 Cytochrome C oxidase, cbb3-type, subunit III syc0094_c PF00395 S-layer homology domain syc0094_c PF04966 Carbohydrate-selective porin, OprB family syc0095_d PF09375 Imelysin syc0098_d PF00814 Glycoprotease family syc0101_c PF00698 Acyl transferase domain syc0102_c PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III syc0102_c PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal syc0103_c PF02504 Fatty acid synthesis protein syc0104_c PF00072 Response regulator receiver domain syc0104_c PF00486 Transcriptional regulatory protein, C terminal syc0105_d PF06745 KaiC syc0105_d PF18073 Rubredoxin metal binding domain syc0107_c PF00005 ABC transporter syc0108_d PF00132 Bacterial transferase hexapeptide (six repeats) syc0108_d PF14602 Hexapeptide repeat of succinyl-transferase syc0108_d PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD syc0109_c PF02445 Quinolinate synthetase A protein syc0110_c PF00484 Carbonic anhydrase syc0113_c PF01116 Fructose-bisphosphate aldolase class-II syc0115_d PF03186 CobD/Cbib protein syc0116_d PF08544 GHMP kinases C terminal syc0116_d PF00288 GHMP kinases N terminal domain syc0117_d PF00361 Proton-conducting membrane transporter syc0121_d PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain syc0121_d PF16582 Middle domain of thiamine pyrophosphate syc0121_d PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain syc0123_c PF02774 Semialdehyde dehydrogenase, dimerisation domain syc0123_c PF01118 Semialdehyde dehydrogenase, NAD binding domain syc0124_d PF00925 GTP cyclohydrolase II syc0124_d PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase syc0125_c PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD syc0128_c PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain syc0128_c PF02222 ATP-grasp domain syc0129_c PF00101 Ribulose bisphosphate carboxylase, small chain syc0130_c PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain syc0130_c PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain syc0131_c PF00936 BMC domain syc0133_c PF00101 Ribulose bisphosphate carboxylase, small chain syc0134_c PF03319 Ethanolamine utilisation protein EutN/carboxysome syc0136_c PF00148 Nitrogenase component 1 type Oxidoreductase syc0137_c PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family syc0139_c PF01131 DNA topoisomerase syc0139_c PF13368 Topoisomerase C-terminal repeat syc0139_c PF01751 Toprim domain syc0140_d PF00361 Proton-conducting membrane transporter syc0141_d PF00005 ABC transporter syc0142_c PF01925 Sulfite exporter TauE/SafE syc0144_d PF03099 Biotin/lipoate A/B protein ligase family syc0148_c PF00528 Binding-protein-dependent transport system inner membrane component syc0149_d PF00005 ABC transporter syc0149_d PF08402 TOBE domain syc0151_d PF00486 Transcriptional regulatory protein, C terminal syc0151_d PF00072 Response regulator receiver domain syc0152_d PF16123 Hydroxyacylglutathione hydrolase C-terminus syc0152_d PF00753 Metallo-beta-lactamase superfamily syc0157_d PF07238 PilZ domain syc0157_d PF03552 Cellulose synthase syc0157_d PF00535 Glycosyl transferase family 2 syc0162_c PF00850 Histone deacetylase domain syc0163_d PF02872 5'-nucleotidase, C-terminal domain syc0163_d PF00149 Calcineurin-like phosphoesterase syc0164_c PF01078 Magnesium chelatase, subunit ChlI syc0164_c PF13335 Magnesium chelatase, subunit ChlI C-terminal syc0165_d PF01230 HIT domain syc0166_d PF00124 Photosynthetic reaction centre protein syc0167_c PF00194 Eukaryotic-type carbonic anhydrase syc0168_c PF02540 NAD synthase syc0169_d PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP syc0172_d PF00719 Inorganic pyrophosphatase syc0173_c PF03707 Bacterial signalling protein N terminal repeat syc0173_c PF00990 Diguanylate cyclase, GGDEF domain syc0173_c PF00563 EAL domain syc0175_c PF12848 ABC transporter syc0175_c PF16326 ABC transporter C-terminal domain syc0175_c PF00005 ABC transporter syc0176_c PF01740 STAS domain syc0176_c PF00916 Sulfate permease family syc0177_c PF00289 Biotin carboxylase, N-terminal domain syc0177_c PF02785 Biotin carboxylase C-terminal domain syc0177_c PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain syc0178_d PF02684 Lipid-A-disaccharide synthetase syc0179_c PF13291 ACT domain syc0179_c PF04607 Region found in RelA / SpoT proteins syc0179_c PF02824 TGS domain syc0182_d PF00849 RNA pseudouridylate synthase syc0184_c PF00809 Pterin binding enzyme syc0184_c PF02965 Vitamin B12 dependent methionine synthase, activation domain syc0184_c PF02607 B12 binding domain syc0184_c PF02310 B12 binding domain syc0184_c PF02574 Homocysteine S-methyltransferase syc0185_d PF01544 CorA-like Mg2+ transporter protein syc0186_c PF02132 RecR protein syc0186_c PF13662 Toprim domain syc0188_c PF00067 Cytochrome P450 syc0189_d PF01040 UbiA prenyltransferase family syc0190_d PF01914 MarC family integral membrane protein syc0194_c PF03816 Cell envelope-related transcriptional attenuator domain syc0195_d PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus syc0195_d PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term syc0196_d PF04434 SWIM zinc finger syc0198_d PF00360 Phytochrome region syc0198_d PF08446 PAS fold syc0198_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0198_d PF01590 GAF domain syc0198_d PF00512 His Kinase A (phospho-acceptor) domain syc0199_d PF00072 Response regulator receiver domain syc0200_d PF00990 Diguanylate cyclase, GGDEF domain syc0200_d PF03707 Bacterial signalling protein N terminal repeat syc0200_d PF00563 EAL domain syc0203_c PF00501 AMP-binding enzyme syc0203_c PF13193 AMP-binding enzyme C-terminal domain syc0203_c PF16177 Acetyl-coenzyme A synthetase N-terminus syc0204_d PF13419 Haloacid dehalogenase-like hydrolase syc0206_d PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain syc0206_d PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain syc0207_c PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L syc0208_c PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 syc0209_c PF13237 4Fe-4S dicluster domain syc0210_c PF00146 NADH dehydrogenase syc0211_c PF16363 GDP-mannose 4,6 dehydratase syc0212_c PF01594 AI-2E family transporter syc0213_d PF01327 Polypeptide deformylase syc0219_c PF01063 Amino-transferase class IV syc0220_c PF04715 Anthranilate synthase component I, N terminal region syc0220_c PF00425 chorismate binding enzyme syc0221_c PF06508 Queuosine biosynthesis protein QueC syc0222_c PF04055 Radical SAM superfamily syc0224_c PF01209 ubiE/COQ5 methyltransferase family syc0227_c PF03461 TRCF domain syc0227_c PF00271 Helicase conserved C-terminal domain syc0227_c PF00270 DEAD/DEAH box helicase syc0227_c PF02559 CarD-like/TRCF domain syc0227_c PF17757 UvrB interaction domain syc0228_c PF03796 DnaB-like helicase C terminal domain syc0228_c PF14528 LAGLIDADG-like domain syc0228_c PF00772 DnaB-like helicase N terminal domain syc0228_c PF00772 DnaB-like helicase N terminal domain syc0228_c PF03796 DnaB-like helicase C terminal domain syc0228_c PF14528 LAGLIDADG-like domain syc0229_d PF00270 DEAD/DEAH box helicase syc0229_d PF08148 DSHCT (NUC185) domain syc0229_d PF00271 Helicase conserved C-terminal domain syc0230_c PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain syc0230_c PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain syc0230_c PF06827 Zinc finger found in FPG and IleRS syc0231_c PF02427 Photosystem I reaction centre subunit IV / PsaE syc0234_c PF00156 Phosphoribosyl transferase domain syc0235_c PF00950 ABC 3 transport family syc0236_c PF00005 ABC transporter syc0237_d PF01297 Zinc-uptake complex component A periplasmic syc0238_d PF01134 Glucose inhibited division protein A syc0239_d PF01434 Peptidase family M41 syc0239_d PF00004 ATPase family associated with various cellular activities (AAA) syc0239_d PF17862 AAA+ lid domain syc0239_d PF06480 FtsH Extracellular syc0240_c PF02938 GAD domain syc0240_c PF00152 tRNA synthetases class II (D, K and N) syc0240_c PF01336 OB-fold nucleic acid binding domain syc0241_d PF00005 ABC transporter syc0241_d PF00664 ABC transporter transmembrane region syc0243_c PF03466 LysR substrate binding domain syc0243_c PF00126 Bacterial regulatory helix-turn-helix protein, lysR family syc0244_c PF02219 Methylenetetrahydrofolate reductase syc0244_c PF02574 Homocysteine S-methyltransferase syc0245_c PF00579 tRNA synthetases class I (W and Y) syc0248_d PF08352 Oligopeptide/dipeptide transporter, C-terminal region syc0248_d PF00005 ABC transporter syc0251_c PF00582 Universal stress protein family syc0252_c PF16124 RecQ zinc-binding syc0252_c PF00270 DEAD/DEAH box helicase syc0252_c PF00271 Helicase conserved C-terminal domain syc0253_c PF01812 5-formyltetrahydrofolate cyclo-ligase family syc0254_d PF04015 Domain of unknown function (DUF362) syc0255_c PF08448 PAS fold syc0255_c PF00990 Diguanylate cyclase, GGDEF domain syc0256_c PF00390 Malic enzyme, N-terminal domain syc0256_c PF03949 Malic enzyme, NAD binding domain syc0259_c PF00805 Pentapeptide repeats (8 copies) syc0259_c PF00069 Protein kinase domain syc0260_d PF01588 Putative tRNA binding domain syc0260_d PF03147 Ferredoxin-fold anticodon binding domain syc0260_d PF03483 B3/4 domain syc0260_d PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain syc0260_d PF03484 tRNA synthetase B5 domain syc0261_d PF10410 DnaB-helicase binding domain of primase syc0261_d PF08275 DNA primase catalytic core, N-terminal domain syc0261_d PF01807 CHC2 zinc finger syc0262_c PF01022 Bacterial regulatory protein, arsR family syc0263_d PF02069 Prokaryotic metallothionein syc0267_c PF03454 MoeA C-terminal region (domain IV) syc0267_c PF03453 MoeA N-terminal region (domain I and II) syc0267_c PF00994 Probable molybdopterin binding domain syc0268_d PF01967 MoaC family syc0268_d PF00994 Probable molybdopterin binding domain syc0270_d PF02391 MoaE protein syc0271_d PF04055 Radical SAM superfamily syc0271_d PF06463 Molybdenum Cofactor Synthesis C syc0274_d PF01632 Ribosomal protein L35 syc0275_d PF00453 Ribosomal protein L20 syc0276_d PF00497 Bacterial extracellular solute-binding proteins, family 3 syc0279_c PF01256 Carbohydrate kinase syc0279_c PF03853 YjeF-related protein N-terminus syc0282_c PF00571 CBS domain syc0282_c PF01769 Divalent cation transporter syc0282_c PF03448 MgtE intracellular N domain syc0283_d PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III syc0283_d PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II syc0283_d PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain syc0283_d PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I syc0285_d PF01725 Ham1 family syc0287_c PF00999 Sodium/hydrogen exchanger family syc0288_d PF02926 THUMP domain syc0288_d PF01170 Putative RNA methylase family UPF0020 syc0291_c PF01435 Peptidase family M48 syc0292_c PF17886 HSP20-like domain found in ArsA syc0292_c PF02374 Anion-transporting ATPase syc0294_c PF00654 Voltage gated chloride channel syc0295_c PF02798 Glutathione S-transferase, N-terminal domain syc0296_d PF00266 Aminotransferase class-V syc0298_c PF00149 Calcineurin-like phosphoesterase syc0299_c PF00814 Glycoprotease family syc0300_d PF02507 Photosystem I reaction centre subunit III syc0301_d PF01701 Photosystem I reaction centre subunit IX / PsaJ syc0306_c PF00005 ABC transporter syc0308_c PF00126 Bacterial regulatory helix-turn-helix protein, lysR family syc0308_c PF03466 LysR substrate binding domain syc0310_d PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain syc0310_d PF01077 Nitrite and sulphite reductase 4Fe-4S domain syc0312_d PF00528 Binding-protein-dependent transport system inner membrane component syc0313_d PF00005 ABC transporter syc0314_d PF00005 ABC transporter syc0315_d PF01568 Molydopterin dinucleotide binding domain syc0315_d PF00384 Molybdopterin oxidoreductase syc0315_d PF04879 Molybdopterin oxidoreductase Fe4S4 domain syc0318_d PF00355 Rieske [2Fe-2S] domain syc0319_d PF16639 Apocytochrome F, N-terminal syc0319_d PF01333 Apocytochrome F, C-terminal syc0320_d PF01790 Prolipoprotein diacylglyceryl transferase syc0321_d PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc0324_c PF05193 Peptidase M16 inactive domain syc0324_c PF00675 Insulinase (Peptidase family M16) syc0325_d PF05996 Ferredoxin-dependent bilin reductase syc0326_d PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion syc0326_d PF00529 HlyD membrane-fusion protein of T1SS syc0328_c PF09157 Pseudouridine synthase II TruB, C-terminal syc0328_c PF16198 tRNA pseudouridylate synthase B C-terminal domain syc0328_c PF01509 TruB family pseudouridylate synthase (N terminal domain) syc0329_d PF00072 Response regulator receiver domain syc0330_c PF01016 Ribosomal L27 protein syc0331_c PF00829 Ribosomal prokaryotic L21 protein syc0332_d PF07688 KaiA C-terminal domain syc0333_d PF07689 KaiB domain syc0334_d PF06745 KaiC syc0336_c PF00255 Glutathione peroxidase syc0343_d PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system syc0345_c PF00589 Phage integrase family syc0349_d PF01209 ubiE/COQ5 methyltransferase family syc0351_d PF08032 RNA 2'-O ribose methyltransferase substrate binding syc0351_d PF00588 SpoU rRNA Methylase family syc0352_d PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain syc0352_d PF07992 Pyridine nucleotide-disulphide oxidoreductase syc0353_d PF00218 Indole-3-glycerol phosphate synthase syc0356_c PF03740 Pyridoxal phosphate biosynthesis protein PdxJ syc0359_c PF00625 Guanylate kinase syc0360_d PF02789 Cytosol aminopeptidase family, N-terminal domain syc0360_d PF00883 Cytosol aminopeptidase family, catalytic domain syc0361_d PF12804 MobA-like NTP transferase domain syc0362_c PF14251 Domain of unknown function (DUF4346) syc0368_c PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit syc0369_c PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit syc0370_c PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 syc0372_d PF14870 Photosynthesis system II assembly factor YCF48 syc0373_d PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit syc0373_d PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits syc0374_d PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits syc0375_d PF02419 PsbL protein syc0376_d PF01788 PsbJ syc0377_c PF00535 Glycosyl transferase family 2 syc0378_d PF00795 Carbon-nitrogen hydrolase syc0379_d PF04244 Deoxyribodipyrimidine photo-lyase-related protein syc0380_d PF02542 YgbB family syc0381_d PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle syc0382_d PF00731 AIR carboxylase syc0383_d PF09367 CpeS-like protein syc0392_d PF00990 Diguanylate cyclase, GGDEF domain syc0392_d PF08448 PAS fold syc0392_d PF00563 EAL domain syc0392_d PF08447 PAS fold syc0393_c PF12705 PD-(D/E)XK nuclease superfamily syc0393_c PF00580 UvrD/REP helicase N-terminal domain syc0393_c PF13361 UvrD-like helicase C-terminal domain syc0396_d PF00005 ABC transporter syc0397_d PF01926 50S ribosome-binding GTPase syc0397_d PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal syc0398_d PF03330 Lytic transglycolase syc0399_d PF02224 Cytidylate kinase syc0399_d PF02569 Pantoate-beta-alanine ligase syc0401_d PF01370 NAD dependent epimerase/dehydratase family syc0402_c PF01966 HD domain syc0402_c PF00072 Response regulator receiver domain syc0404_d PF01722 BolA-like protein syc0405_d PF00462 Glutaredoxin syc0408_c PF09334 tRNA synthetases class I (M) syc0408_c PF00133 tRNA synthetases class I (I, L, M and V) syc0408_c PF08264 Anticodon-binding domain of tRNA syc0410_d PF01571 Aminomethyltransferase folate-binding domain syc0410_d PF08669 Glycine cleavage T-protein C-terminal barrel domain syc0410_d PF07992 Pyridine nucleotide-disulphide oxidoreductase syc0410_d PF17806 Sarcosine oxidase A3 domain syc0412_c PF01171 PP-loop family syc0412_c PF09179 TilS substrate binding domain syc0414_c PF01433 Peptidase family M1 domain syc0416_d PF03412 Peptidase C39 family syc0416_d PF00664 ABC transporter transmembrane region syc0416_d PF00005 ABC transporter syc0417_d PF13533 Biotin-lipoyl like syc0418_c PF02941 Ferredoxin thioredoxin reductase variable alpha chain syc0422_c PF01523 Putative modulator of DNA gyrase syc0423_d PF01061 ABC-2 type transporter syc0425_c PF00773 RNB domain syc0426_c PF01084 Ribosomal protein S18 syc0427_c PF00471 Ribosomal protein L33 syc0428_d PF00069 Protein kinase domain syc0430_d PF09335 SNARE associated Golgi protein syc0431_d PF00403 Heavy-metal-associated domain syc0431_d PF07992 Pyridine nucleotide-disulphide oxidoreductase syc0431_d PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain syc0433_c PF00162 Phosphoglycerate kinase syc0434_d PF00582 Universal stress protein family syc0435_d PF01926 50S ribosome-binding GTPase syc0436_d PF01594 AI-2E family transporter syc0437_d PF01479 S4 domain syc0437_d PF00849 RNA pseudouridylate synthase syc0438_d PF00069 Protein kinase domain syc0438_d PF08239 Bacterial SH3 domain syc0439_c PF00072 Response regulator receiver domain syc0440_c PF00155 Aminotransferase class I and II syc0441_c PF00216 Bacterial DNA-binding protein syc0444_d PF01883 Iron-sulfur cluster assembly protein syc0444_d PF10609 NUBPL iron-transfer P-loop NTPase syc0445_d PF01098 Cell cycle protein syc0446_d PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase syc0448_c PF13180 PDZ domain syc0449_d PF08299 Bacterial dnaA protein helix-turn-helix syc0449_d PF00308 Bacterial dnaA protein syc0449_d PF11638 DnaA N-terminal domain syc0450_d PF01209 ubiE/COQ5 methyltransferase family syc0451_d PF04286 Protein of unknown function (DUF445) syc0453_d PF01964 Radical SAM ThiC family syc0456_d PF03702 Anhydro-N-acetylmuramic acid kinase syc0460_c PF00004 ATPase family associated with various cellular activities (AAA) syc0460_c PF07724 AAA domain (Cdc48 subfamily) syc0460_c PF10431 C-terminal, D2-small domain, of ClpB protein syc0460_c PF02861 Clp amino terminal domain, pathogenicity island component syc0460_c PF17871 AAA lid domain syc0461_c PF00127 Copper binding proteins, plastocyanin/azurin family syc0463_c PF01208 Uroporphyrinogen decarboxylase (URO-D) syc0464_c PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) syc0464_c PF02806 Alpha amylase, C-terminal all-beta domain syc0464_c PF00128 Alpha amylase, catalytic domain syc0467_c PF00689 Cation transporting ATPase, C-terminus syc0467_c PF00690 Cation transporter/ATPase, N-terminus syc0468_c PF02080 TrkA-C domain syc0468_c PF02254 TrkA-N domain syc0469_c PF02386 Cation transport protein syc0470_c PF00270 DEAD/DEAH box helicase syc0470_c PF00271 Helicase conserved C-terminal domain syc0470_c PF17191 RecG wedge domain syc0476_c PF01138 3' exoribonuclease family, domain 1 syc0476_c PF03725 3' exoribonuclease family, domain 2 syc0478_d PF02577 Bifunctional nuclease syc0481_c PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) syc0481_c PF00364 Biotin-requiring enzyme syc0481_c PF02817 e3 binding domain syc0488_c PF02384 N-6 DNA Methylase syc0491_c PF17792 ThiD2 family syc0491_c PF02581 Thiamine monophosphate synthase syc0494_c PF03130 PBS lyase HEAT-like repeat syc0495_c PF00502 Phycobilisome protein syc0496_c PF00502 Phycobilisome protein syc0497_c PF01383 CpcD/allophycocyanin linker domain syc0498_c PF00427 Phycobilisome Linker polypeptide syc0498_c PF01383 CpcD/allophycocyanin linker domain syc0499_c PF00427 Phycobilisome Linker polypeptide syc0499_c PF01383 CpcD/allophycocyanin linker domain syc0500_c PF00502 Phycobilisome protein syc0501_c PF00502 Phycobilisome protein syc0503_d PF08486 Stage II sporulation protein syc0510_c PF17810 Arginine decarboxylase helical bundle domain syc0510_c PF17944 Arginine decarboxylase C-terminal helical extension syc0510_c PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain syc0514_c PF04168 A predicted alpha-helical domain with a conserved ER motif. syc0514_c PF14403 Circularly permuted ATP-grasp type 2 syc0515_c PF14403 Circularly permuted ATP-grasp type 2 syc0516_c PF00155 Aminotransferase class I and II syc0517_c PF01063 Amino-transferase class IV syc0518_d PF00561 alpha/beta hydrolase fold syc0519_c PF04025 Domain of unknown function (DUF370) syc0525_c PF13193 AMP-binding enzyme C-terminal domain syc0525_c PF00501 AMP-binding enzyme syc0526_c PF13378 Enolase C-terminal domain-like syc0527_c PF02446 4-alpha-glucanotransferase syc0529_d PF01709 Transcriptional regulator syc0531_d PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term syc0531_d PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain syc0532_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0532_d PF01584 CheW-like domain syc0532_d PF01627 Hpt domain syc0532_d PF00072 Response regulator receiver domain syc0533_d PF00072 Response regulator receiver domain syc0533_d PF00486 Transcriptional regulatory protein, C terminal syc0534_d PF00989 PAS fold syc0534_d PF00512 His Kinase A (phospho-acceptor) domain syc0534_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0535_d PF00849 RNA pseudouridylate synthase syc0535_d PF01479 S4 domain syc0537_d PF01842 ACT domain syc0537_d PF00551 Formyl transferase syc0538_d PF00206 Lyase syc0538_d PF10415 Fumarase C C-terminus syc0540_c PF13419 Haloacid dehalogenase-like hydrolase syc0542_c PF04715 Anthranilate synthase component I, N terminal region syc0542_c PF00425 chorismate binding enzyme syc0543_c PF02531 PsaD syc0544_d PF13840 ACT domain syc0544_d PF01842 ACT domain syc0544_d PF00696 Amino acid kinase family syc0546_c PF17862 AAA+ lid domain syc0546_c PF06480 FtsH Extracellular syc0546_c PF01434 Peptidase family M41 syc0546_c PF00004 ATPase family associated with various cellular activities (AAA) syc0547_d PF01783 Ribosomal L32p protein family syc0548_c PF00485 Phosphoribulokinase / Uridine kinase family syc0551_d PF01926 50S ribosome-binding GTPase syc0551_d PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal syc0553_d PF03040 CemA family syc0556_d PF10674 Protein of unknown function (DUF2488) syc0557_d PF01475 Ferric uptake regulator family syc0559_c PF07690 Major Facilitator Superfamily syc0560_c PF02565 Recombination protein O C terminal syc0560_c PF11967 Recombination protein O N terminal syc0561_c PF01791 DeoC/LacD family aldolase syc0564_d PF01810 LysE type translocator syc0566_c PF00175 Oxidoreductase NAD-binding domain syc0566_c PF01383 CpcD/allophycocyanin linker domain syc0567_d PF00485 Phosphoribulokinase / Uridine kinase family syc0568_c PF01743 Poly A polymerase head domain syc0568_c PF12627 Probable RNA and SrmB- binding site of polymerase A syc0568_c PF13735 tRNA nucleotidyltransferase domain 2 putative syc0569_d PF01795 MraW methylase family syc0570_d PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain syc0570_d PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain syc0570_d PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain syc0571_c PF01042 Endoribonuclease L-PSP syc0573_c PF01593 Flavin containing amine oxidoreductase syc0574_d PF01738 Dienelactone hydrolase family syc0575_c PF03900 Porphobilinogen deaminase, C-terminal domain syc0575_c PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain syc0577_c PF00459 Inositol monophosphatase family syc0580_d PF01189 16S rRNA methyltransferase RsmB/F syc0580_d PF01029 NusB family syc0581_c PF03816 Cell envelope-related transcriptional attenuator domain syc0583_d PF01018 GTP1/OBG syc0583_d PF01926 50S ribosome-binding GTPase syc0584_d PF00551 Formyl transferase syc0585_c PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP syc0585_c PF12557 Cob(I)alamin adenosyltransferase N terminal syc0586_c PF02492 CobW/HypB/UreG, nucleotide-binding domain syc0586_c PF07683 Cobalamin synthesis protein cobW C-terminal domain syc0588_d PF01571 Aminomethyltransferase folate-binding domain syc0591_c PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain syc0591_c PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain syc0592_d PF01547 Bacterial extracellular solute-binding protein syc0593_d PF00528 Binding-protein-dependent transport system inner membrane component syc0594_d PF00528 Binding-protein-dependent transport system inner membrane component syc0596_c PF01593 Flavin containing amine oxidoreductase syc0598_c PF02875 Mur ligase family, glutamate ligase domain syc0598_c PF08245 Mur ligase middle domain syc0599_c PF00202 Aminotransferase class-III syc0600_d PF01434 Peptidase family M41 syc0600_d PF06480 FtsH Extracellular syc0600_d PF17862 AAA+ lid domain syc0600_d PF00004 ATPase family associated with various cellular activities (AAA) syc0601_d PF12848 ABC transporter syc0601_d PF16326 ABC transporter C-terminal domain syc0601_d PF00005 ABC transporter syc0605_d PF00753 Metallo-beta-lactamase superfamily syc0605_d PF04273 Putative phosphatase (DUF442) syc0606_d PF11127 Protein of unknown function (DUF2892) syc0606_d PF00581 Rhodanese-like domain syc0607_d PF01925 Sulfite exporter TauE/SafE syc0608_c PF02885 Glycosyl transferase family, helical bundle domain syc0608_c PF00591 Glycosyl transferase family, a/b domain syc0612_c PF07977 FabA-like domain syc0614_c PF01103 Surface antigen syc0614_c PF07244 Surface antigen variable number repeat syc0615_c PF01259 SAICAR synthetase syc0617_d PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain syc0617_d PF02844 Phosphoribosylglycinamide synthetase, N domain syc0617_d PF02843 Phosphoribosylglycinamide synthetase, C domain syc0618_d PF00989 PAS fold syc0618_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0618_d PF00512 His Kinase A (phospho-acceptor) domain syc0618_d PF00672 HAMP domain syc0619_d PF01048 Phosphorylase superfamily syc0620_d PF00749 tRNA synthetases class I (E and Q), catalytic domain syc0622_d PF01241 Photosystem I psaG / psaK syc0624_c PF00501 AMP-binding enzyme syc0625_d PF09383 NIL domain syc0627_d PF01220 Dehydroquinase class II syc0629_d PF13673 Acetyltransferase (GNAT) domain syc0630_c PF12169 DNA polymerase III subunits gamma and tau domain III syc0633_c PF01521 Iron-sulphur cluster biosynthesis syc0637_d PF11791 Aconitate B N-terminal domain syc0637_d PF00330 Aconitase family (aconitate hydratase) syc0637_d PF06434 Aconitate hydratase 2 N-terminus syc0643_c PF03776 Septum formation topological specificity factor MinE syc0644_c PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain syc0646_d PF01202 Shikimate kinase syc0647_c PF00124 Photosynthetic reaction centre protein syc0648_d PF04055 Radical SAM superfamily syc0649_c PF08865 Domain of unknown function (DUF1830) syc0650_c PF01493 GXGXG motif syc0650_c PF00310 Glutamine amidotransferases class-II syc0650_c PF01645 Conserved region in glutamate synthase syc0650_c PF04898 Glutamate synthase central domain syc0652_d PF01050 Mannose-6-phosphate isomerase syc0652_d PF00483 Nucleotidyl transferase syc0653_d PF00164 Ribosomal protein S12/S23 syc0654_d PF00177 Ribosomal protein S7p/S5e syc0655_d PF03764 Elongation factor G, domain IV syc0655_d PF14492 Elongation Factor G, domain II syc0655_d PF00009 Elongation factor Tu GTP binding domain syc0655_d PF03144 Elongation factor Tu domain 2 syc0655_d PF00679 Elongation factor G C-terminus syc0656_d PF00009 Elongation factor Tu GTP binding domain syc0656_d PF03144 Elongation factor Tu domain 2 syc0656_d PF03143 Elongation factor Tu C-terminal domain syc0657_d PF00338 Ribosomal protein S10p/S20e syc0659_c PF00800 Prephenate dehydratase syc0661_c PF01351 Ribonuclease HII syc0662_c PF10150 Ribonuclease E/G family syc0663_c PF18693 TRAM domain syc0663_c PF04055 Radical SAM superfamily syc0663_c PF00919 Uncharacterized protein family UPF0004 syc0664_c PF07973 Threonyl and Alanyl tRNA synthetase second additional domain syc0664_c PF02272 DHHA1 domain syc0664_c PF01411 tRNA synthetases class II (A) syc0666_d PF00271 Helicase conserved C-terminal domain syc0666_d PF12419 SNF2 Helicase protein syc0666_d PF00176 SNF2 family N-terminal domain syc0672_c PF03109 ABC1 family syc0675_c PF04461 Protein of unknown function (DUF520) syc0677_c PF07085 DRTGG domain syc0679_d PF00106 short chain dehydrogenase syc0681_c PF01627 Hpt domain syc0681_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0681_c PF02895 Signal transducing histidine kinase, homodimeric domain syc0681_c PF01584 CheW-like domain syc0681_c PF01627 Hpt domain syc0681_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0681_c PF02895 Signal transducing histidine kinase, homodimeric domain syc0681_c PF01584 CheW-like domain syc0682_c PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain syc0682_c PF01590 GAF domain syc0684_c PF00072 Response regulator receiver domain syc0685_c PF00072 Response regulator receiver domain syc0685_c PF14332 Domain of unknown function (DUF4388) syc0687_c PF00155 Aminotransferase class I and II syc0689_c PF00586 AIR synthase related protein, N-terminal domain syc0689_c PF02769 AIR synthase related protein, C-terminal domain syc0692_d PF17760 UvrA interaction domain syc0692_d PF17755 UvrA DNA-binding domain syc0693_d PF00437 Type II/IV secretion system protein syc0698_d PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain syc0698_d PF07992 Pyridine nucleotide-disulphide oxidoreductase syc0701_d PF00795 Carbon-nitrogen hydrolase syc0704_d PF00586 AIR synthase related protein, N-terminal domain syc0704_d PF02769 AIR synthase related protein, C-terminal domain syc0705_c PF05496 Holliday junction DNA helicase RuvB P-loop domain syc0705_c PF17864 RuvB AAA lid domain syc0705_c PF05491 RuvB C-terminal winged helix domain syc0710_c PF00152 tRNA synthetases class II (D, K and N) syc0710_c PF01336 OB-fold nucleic acid binding domain syc0712_d PF02492 CobW/HypB/UreG, nucleotide-binding domain syc0712_d PF07683 Cobalamin synthesis protein cobW C-terminal domain syc0715_c PF03706 Lysylphosphatidylglycerol synthase TM region syc0715_c PF09924 Uncharacterised conserved protein (DUF2156) syc0716_c PF01594 AI-2E family transporter syc0718_c PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle syc0721_c PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase syc0722_d PF01475 Ferric uptake regulator family syc0723_d PF03707 Bacterial signalling protein N terminal repeat syc0723_d PF00990 Diguanylate cyclase, GGDEF domain syc0723_d PF13188 PAS domain syc0723_d PF00563 EAL domain syc0724_c PF00005 ABC transporter syc0725_c PF00037 4Fe-4S binding domain syc0726_c PF13393 Histidyl-tRNA synthetase syc0727_c PF01556 DnaJ C terminal domain syc0727_c PF00684 DnaJ central domain syc0727_c PF00226 DnaJ domain syc0728_c PF00999 Sodium/hydrogen exchanger family syc0730_d PF00534 Glycosyl transferases group 1 syc0730_d PF00862 Sucrose synthase syc0732_c PF04452 RNA methyltransferase syc0737_c PF02777 Iron/manganese superoxide dismutases, C-terminal domain syc0737_c PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain syc0738_d PF06206 CpeT/CpcT family (DUF1001) syc0740_d PF02075 Crossover junction endodeoxyribonuclease RuvC syc0743_d PF04012 PspA/IM30 family syc0746_d PF12627 Probable RNA and SrmB- binding site of polymerase A syc0746_d PF01743 Poly A polymerase head domain syc0746_d PF01966 HD domain syc0749_d PF00043 Glutathione S-transferase, C-terminal domain syc0749_d PF02798 Glutathione S-transferase, N-terminal domain syc0752_c PF00912 Transglycosylase syc0752_c PF00905 Penicillin binding protein transpeptidase domain syc0752_c PF17092 Penicillin-binding protein OB-like domain syc0754_d PF01634 ATP phosphoribosyltransferase syc0755_d PF00664 ABC transporter transmembrane region syc0755_d PF00005 ABC transporter syc0756_d PF00391 PEP-utilising enzyme, mobile domain syc0756_d PF02896 PEP-utilising enzyme, TIM barrel domain syc0756_d PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain syc0757_d PF00069 Protein kinase domain syc0757_d PF00805 Pentapeptide repeats (8 copies) syc0758_c PF01966 HD domain syc0758_c PF07697 7TM-HD extracellular syc0758_c PF07698 7TM receptor with intracellular HD hydrolase syc0759_d PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain syc0759_d PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain syc0760_d PF00348 Polyprenyl synthetase syc0762_c PF12697 Alpha/beta hydrolase family syc0763_d PF00583 Acetyltransferase (GNAT) family syc0764_d PF06206 CpeT/CpcT family (DUF1001) syc0766_c PF02872 5'-nucleotidase, C-terminal domain syc0766_c PF00149 Calcineurin-like phosphoesterase syc0784_c PF17482 Phage tail sheath C-terminal domain syc0784_c PF04984 Phage tail sheath protein subtilisin-like domain syc0786_c PF07484 Phage Tail Collar Domain syc0806_c PF00271 Helicase conserved C-terminal domain syc0806_c PF04851 Type III restriction enzyme, res subunit syc0813_d PF00692 dUTPase syc0817_d PF04551 GcpE protein syc0818_d PF00595 PDZ domain syc0818_d PF03572 Peptidase family S41 syc0819_c PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain syc0819_c PF02142 MGS-like domain syc0819_c PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain syc0820_d PF11780 Protein of unknown function (DUF3318) syc0822_c PF03109 ABC1 family syc0823_d PF01276 Orn/Lys/Arg decarboxylase, major domain syc0823_d PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain syc0824_d PF05175 Methyltransferase small domain syc0826_c PF00132 Bacterial transferase hexapeptide (six repeats) syc0827_c PF02481 DNA recombination-mediator protein A syc0827_c PF17782 DprA winged helix domain syc0828_c PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase syc0829_c PF03061 Thioesterase superfamily syc0830_d PF00582 Universal stress protein family syc0831_c PF05151 Photosystem II reaction centre M protein (PsbM) syc0833_d PF00421 Photosystem II protein syc0834_d PF01405 Photosystem II reaction centre T protein syc0835_d PF03477 ATP cone domain syc0836_d PF00575 S1 RNA binding domain syc0839_d PF02617 ATP-dependent Clp protease adaptor protein ClpS syc0841_c PF01022 Bacterial regulatory protein, arsR family syc0844_c PF00118 TCP-1/cpn60 chaperonin family syc0846_c PF07885 Ion channel syc0848_d PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase syc0850_c PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) syc0855_c PF01218 Coproporphyrinogen III oxidase syc0856_c PF14815 NUDIX domain syc0856_c PF00730 HhH-GPD superfamily base excision DNA repair protein syc0856_c PF00633 Helix-hairpin-helix motif syc0857_c PF04542 Sigma-70 region 2 syc0857_c PF04539 Sigma-70 region 3 syc0857_c PF04545 Sigma-70, region 4 syc0857_c PF00140 Sigma-70 factor, region 1.2 syc0859_c PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain syc0859_c PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain syc0860_c PF02245 Methylpurine-DNA glycosylase (MPG) syc0863_d PF02633 Creatinine amidohydrolase syc0864_c PF12794 Mechanosensitive ion channel inner membrane domain 1 syc0864_c PF00924 Mechanosensitive ion channel syc0864_c PF12795 Mechanosensitive ion channel porin domain syc0865_c PF00211 Adenylate and Guanylate cyclase catalytic domain syc0868_c PF02153 Prephenate dehydrogenase syc0872_c PF00421 Photosystem II protein syc0873_c PF00124 Photosynthetic reaction centre protein syc0874_d PF02392 Ycf4 syc0875_d PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD syc0877_c PF17764 3′ DNA-binding domain (3′BD) syc0877_c PF00271 Helicase conserved C-terminal domain syc0877_c PF00270 DEAD/DEAH box helicase syc0877_c PF18319 PriA DNA helicase Cys-rich region (CRR) domain syc0877_c PF18074 Primosomal protein N C-terminal domain syc0879_d PF04542 Sigma-70 region 2 syc0879_d PF04539 Sigma-70 region 3 syc0879_d PF00140 Sigma-70 factor, region 1.2 syc0879_d PF04545 Sigma-70, region 4 syc0880_c PF03734 L,D-transpeptidase catalytic domain syc0880_c PF01476 LysM domain syc0881_c PF00202 Aminotransferase class-III syc0882_c PF00989 PAS fold syc0882_c PF00512 His Kinase A (phospho-acceptor) domain syc0882_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc0883_d PF00578 AhpC/TSA family syc0884_d PF02910 Fumarate reductase flavoprotein C-term syc0884_d PF00890 FAD binding domain syc0885_c PF00664 ABC transporter transmembrane region syc0885_c PF00005 ABC transporter syc0886_c PF00113 Enolase, C-terminal TIM barrel domain syc0886_c PF03952 Enolase, N-terminal domain syc0887_d PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily syc0888_d PF02861 Clp amino terminal domain, pathogenicity island component syc0888_d PF10431 C-terminal, D2-small domain, of ClpB protein syc0888_d PF07724 AAA domain (Cdc48 subfamily) syc0888_d PF00004 ATPase family associated with various cellular activities (AAA) syc0888_d PF17871 AAA lid domain syc0889_d PF00584 SecE/Sec61-gamma subunits of protein translocation complex syc0890_d PF02357 Transcription termination factor nusG syc0890_d PF00467 KOW motif syc0891_d PF00298 Ribosomal protein L11, RNA binding domain syc0891_d PF03946 Ribosomal protein L11, N-terminal domain syc0892_d PF00687 Ribosomal protein L1p/L10e family syc0893_d PF00466 Ribosomal protein L10 syc0894_d PF16320 Ribosomal protein L7/L12 dimerisation domain syc0894_d PF00542 Ribosomal protein L7/L12 C-terminal domain syc0896_c PF17284 Spermidine synthase tetramerisation domain syc0898_c PF00920 Dehydratase family syc0901_c PF07992 Pyridine nucleotide-disulphide oxidoreductase syc0902_c PF06472 ABC transporter transmembrane region 2 syc0902_c PF00005 ABC transporter syc0905_c PF09335 SNARE associated Golgi protein syc0906_c PF05221 S-adenosyl-L-homocysteine hydrolase syc0906_c PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain syc0908_c PF01628 HrcA protein C terminal domain syc0911_d PF00300 Histidine phosphatase superfamily (branch 1) syc0912_d PF00285 Citrate synthase, C-terminal domain syc0913_c PF00488 MutS domain V syc0913_c PF01713 Smr domain syc0914_c PF00924 Mechanosensitive ion channel syc0915_c PF00361 Proton-conducting membrane transporter syc0916_c PF03079 ARD/ARD' family syc0918_d PF03588 Leucyl/phenylalanyl-tRNA protein transferase syc0919_d PF01062 Bestrophin, RFP-TM, chloride channel syc0920_c PF00834 Ribulose-phosphate 3 epimerase family syc0921_d PF00483 Nucleotidyl transferase syc0923_d PF00069 Protein kinase domain syc0925_c PF01551 Peptidase family M23 syc0925_c PF01476 LysM domain syc0926_d PF00378 Enoyl-CoA hydratase/isomerase syc0927_c PF08241 Methyltransferase domain syc0931_d PF00365 Phosphofructokinase syc0932_c PF01169 Uncharacterized protein family UPF0016 syc0935_d PF02222 ATP-grasp domain syc0936_c PF10458 Valyl tRNA synthetase tRNA binding arm syc0936_c PF08264 Anticodon-binding domain of tRNA syc0936_c PF00133 tRNA synthetases class I (I, L, M and V) syc0937_d PF00149 Calcineurin-like phosphoesterase syc0938_d PF13180 PDZ domain syc0939_d PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) syc0940_c PF17863 AAA lid domain syc0940_c PF01078 Magnesium chelatase, subunit ChlI syc0941_d PF12697 Alpha/beta hydrolase family syc0943_d PF03717 Penicillin-binding Protein dimerisation domain syc0943_d PF00905 Penicillin binding protein transpeptidase domain syc0944_c PF13439 Glycosyltransferase Family 4 syc0944_c PF00534 Glycosyl transferases group 1 syc0947_c PF05690 Thiazole biosynthesis protein ThiG syc0950_d PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily syc0952_d PF01336 OB-fold nucleic acid binding domain syc0952_d PF02811 PHP domain syc0952_d PF17657 Bacterial DNA polymerase III alpha subunit finger domain syc0952_d PF14579 Helix-hairpin-helix motif syc0952_d PF07733 Bacterial DNA polymerase III alpha NTPase domain syc0953_d PF04545 Sigma-70, region 4 syc0953_d PF04539 Sigma-70 region 3 syc0953_d PF04542 Sigma-70 region 2 syc0953_d PF00140 Sigma-70 factor, region 1.2 syc0954_d PF07969 Amidohydrolase family syc0955_d PF01565 FAD binding domain syc0958_c PF00005 ABC transporter syc0959_d PF17757 UvrB interaction domain syc0959_d PF12344 Ultra-violet resistance protein B syc0959_d PF02151 UvrB/uvrC motif syc0959_d PF04851 Type III restriction enzyme, res subunit syc0959_d PF00271 Helicase conserved C-terminal domain syc0962_d PF00005 ABC transporter syc0963_d PF01430 Hsp33 protein syc0965_d PF00072 Response regulator receiver domain syc0965_d PF00486 Transcriptional regulatory protein, C terminal syc0967_c PF01926 50S ribosome-binding GTPase syc0967_c PF06071 Protein of unknown function (DUF933) syc0968_d PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion syc0969_c PF02350 UDP-N-acetylglucosamine 2-epimerase syc0972_c PF03741 Integral membrane protein TerC family syc0975_c PF00999 Sodium/hydrogen exchanger family syc0978_d PF03358 NADPH-dependent FMN reductase syc0979_c PF04055 Radical SAM superfamily syc0983_c PF00456 Transketolase, thiamine diphosphate binding domain syc0983_c PF02780 Transketolase, C-terminal domain syc0983_c PF02779 Transketolase, pyrimidine binding domain syc0984_c PF00109 Beta-ketoacyl synthase, N-terminal domain syc0984_c PF02801 Beta-ketoacyl synthase, C-terminal domain syc0985_c PF00550 Phosphopantetheine attachment site syc0986_d PF12838 4Fe-4S dicluster domain syc0987_d PF01380 SIS domain syc0991_c PF08331 Domain of unknown function (DUF1730) syc0992_c PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase syc0995_c PF00528 Binding-protein-dependent transport system inner membrane component syc0996_d PF01761 3-dehydroquinate synthase syc1002_c PF01594 AI-2E family transporter syc1003_d PF17768 RecJ OB domain syc1003_d PF02272 DHHA1 domain syc1003_d PF01368 DHH family syc1003_d PF10141 Single-strand DNA-specific exonuclease, C terminal domain syc1004_d PF03572 Peptidase family S41 syc1004_d PF00595 PDZ domain syc1007_d PF00005 ABC transporter syc1009_d PF01578 Cytochrome C assembly protein syc1012_c PF01494 FAD binding domain syc1013_c PF01765 Ribosome recycling factor syc1014_c PF00696 Amino acid kinase family syc1015_d PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded syc1016_d PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain syc1016_d PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain syc1016_d PF01488 Shikimate / quinate 5-dehydrogenase syc1018_d PF13302 Acetyltransferase (GNAT) domain syc1019_d PF13460 NAD(P)H-binding syc1021_d PF00891 O-methyltransferase domain syc1022_c PF00483 Nucleotidyl transferase syc1027_c PF03976 Polyphosphate kinase 2 (PPK2) syc1028_d PF06574 FAD synthetase syc1028_d PF01687 Riboflavin kinase syc1029_c PF00563 EAL domain syc1029_c PF03707 Bacterial signalling protein N terminal repeat syc1029_c PF00990 Diguanylate cyclase, GGDEF domain syc1029_c PF13188 PAS domain syc1030_d PF00171 Aldehyde dehydrogenase family syc1031_c PF01979 Amidohydrolase family syc1032_d PF10502 Signal peptidase, peptidase S26 syc1034_c PF00300 Histidine phosphatase superfamily (branch 1) syc1037_d PF00905 Penicillin binding protein transpeptidase domain syc1037_d PF03717 Penicillin-binding Protein dimerisation domain syc1037_d PF03793 PASTA domain syc1038_c PF13180 PDZ domain syc1039_c PF01627 Hpt domain syc1039_c PF00672 HAMP domain syc1039_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc1039_c PF00512 His Kinase A (phospho-acceptor) domain syc1039_c PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) syc1039_c PF00072 Response regulator receiver domain syc1040_d PF00009 Elongation factor Tu GTP binding domain syc1040_d PF06421 GTP-binding protein LepA C-terminus syc1040_d PF03144 Elongation factor Tu domain 2 syc1040_d PF00679 Elongation factor G C-terminus syc1041_d PF10502 Signal peptidase, peptidase S26 syc1042_d PF02325 YGGT family syc1043_c PF02617 ATP-dependent Clp protease adaptor protein ClpS syc1044_d PF03742 PetN syc1045_c PF00724 NADH:flavin oxidoreductase / NADH oxidase family syc1046_c PF02609 Exonuclease VII small subunit syc1047_c PF00528 Binding-protein-dependent transport system inner membrane component syc1049_d PF06415 BPG-independent PGAM N-terminus (iPGM_N) syc1049_d PF01676 Metalloenzyme superfamily syc1052_c PF00535 Glycosyl transferase family 2 syc1052_c PF03170 Bacterial cellulose synthase subunit syc1052_c PF07238 PilZ domain syc1054_d PF02575 YbaB/EbfC DNA-binding family syc1055_d PF01451 Low molecular weight phosphotyrosine protein phosphatase syc1058_d PF00583 Acetyltransferase (GNAT) family syc1059_d PF08240 Alcohol dehydrogenase GroES-like domain syc1059_d PF00107 Zinc-binding dehydrogenase syc1060_d PF00756 Putative esterase syc1062_c PF02533 Photosystem II 4 kDa reaction centre component syc1063_c PF01702 Queuine tRNA-ribosyltransferase syc1064_d PF02654 Cobalamin-5-phosphate synthase syc1065_c PF00672 HAMP domain syc1065_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc1065_c PF00512 His Kinase A (phospho-acceptor) domain syc1068_d PF01106 NifU-like domain syc1069_d PF00587 tRNA synthetase class II core domain (G, H, P, S and T) syc1069_d PF02403 Seryl-tRNA synthetase N-terminal domain syc1070_d PF02163 Peptidase family M50 syc1070_d PF13180 PDZ domain syc1071_d PF00730 HhH-GPD superfamily base excision DNA repair protein syc1071_d PF00633 Helix-hairpin-helix motif syc1072_d PF00253 Ribosomal protein S14p/S29e syc1073_d PF12911 N-terminal TM domain of oligopeptide transport permease C syc1073_d PF00528 Binding-protein-dependent transport system inner membrane component syc1076_c PF00909 Ammonium Transporter Family syc1077_c PF00731 AIR carboxylase syc1078_d PF01979 Amidohydrolase family syc1079_d PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus syc1083_c PF03773 Predicted permease syc1085_c PF01427 D-ala-D-ala dipeptidase syc1086_c PF07992 Pyridine nucleotide-disulphide oxidoreductase syc1086_c PF00724 NADH:flavin oxidoreductase / NADH oxidase family syc1087_c PF02779 Transketolase, pyrimidine binding domain syc1087_c PF13292 1-deoxy-D-xylulose-5-phosphate synthase syc1087_c PF02780 Transketolase, C-terminal domain syc1089_d PF08502 LeuA allosteric (dimerisation) domain syc1089_d PF00682 HMGL-like syc1090_d PF00005 ABC transporter syc1093_c PF00124 Photosynthetic reaction centre protein syc1096_d PF01124 MAPEG family syc1098_d PF04055 Radical SAM superfamily syc1098_d PF06968 Biotin and Thiamin Synthesis associated domain syc1100_c PF00004 ATPase family associated with various cellular activities (AAA) syc1100_c PF17862 AAA+ lid domain syc1100_c PF06480 FtsH Extracellular syc1100_c PF01434 Peptidase family M41 syc1104_d PF10716 NADH dehydrogenase transmembrane subunit syc1106_d PF00290 Tryptophan synthase alpha chain syc1108_c PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase syc1109_d PF01241 Photosystem I psaG / psaK syc1112_d PF03462 PCRF domain syc1112_d PF00472 RF-1 domain syc1113_d PF02130 Uncharacterized protein family UPF0054 syc1114_d PF01219 Prokaryotic diacylglycerol kinase syc1115_d PF00117 Glutamine amidotransferase class-I syc1119_c PF02142 MGS-like domain syc1119_c PF01808 AICARFT/IMPCHase bienzyme syc1123_d PF03562 MltA specific insert domain syc1123_d PF06725 3D domain syc1125_d PF02417 Chromate transporter syc1126_d PF00534 Glycosyl transferases group 1 syc1126_d PF00862 Sucrose synthase syc1127_c PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE syc1128_c PF01933 Uncharacterised protein family UPF0052 syc1129_d PF01494 FAD binding domain syc1136_c PF02405 Permease MlaE syc1138_d PF05193 Peptidase M16 inactive domain syc1138_d PF00675 Insulinase (Peptidase family M16) syc1139_d PF05193 Peptidase M16 inactive domain syc1142_c PF04204 Homoserine O-succinyltransferase syc1143_c PF01053 Cys/Met metabolism PLP-dependent enzyme syc1144_c PF01593 Flavin containing amine oxidoreductase syc1145_c PF02601 Exonuclease VII, large subunit syc1145_c PF13742 OB-fold nucleic acid binding domain syc1146_d PF01758 Sodium Bile acid symporter family syc1149_c PF09367 CpeS-like protein syc1153_d PF08495 FIST N domain syc1153_d PF10442 FIST C domain syc1154_c PF00149 Calcineurin-like phosphoesterase syc1155_d PF02390 Putative methyltransferase syc1158_d PF02033 Ribosome-binding factor A syc1159_d PF00933 Glycosyl hydrolase family 3 N terminal domain syc1159_d PF01915 Glycosyl hydrolase family 3 C-terminal domain syc1160_c PF01758 Sodium Bile acid symporter family syc1161_d PF01641 SelR domain syc1163_c PF00005 ABC transporter syc1165_d PF00154 recA bacterial DNA recombination protein syc1168_d PF02237 Biotin protein ligase C terminal domain syc1168_d PF03099 Biotin/lipoate A/B protein ligase family syc1170_c PF13326 Photosystem II Pbs27 syc1174_c PF11805 Protein of unknown function (DUF3326) syc1175_c PF00111 2Fe-2S iron-sulfur cluster binding domain syc1176_c PF00231 ATP synthase syc1177_c PF00006 ATP synthase alpha/beta family, nucleotide-binding domain syc1177_c PF00306 ATP synthase alpha/beta chain, C terminal domain syc1177_c PF02874 ATP synthase alpha/beta family, beta-barrel domain syc1178_c PF00213 ATP synthase delta (OSCP) subunit syc1179_c PF00430 ATP synthase B/B' CF(0) syc1181_c PF00137 ATP synthase subunit C syc1182_c PF00119 ATP synthase A chain syc1183_c PF12966 N-ATPase, AtpR subunit syc1184_c PF13847 Methyltransferase domain syc1185_d PF00502 Phycobilisome protein syc1185_d PF00427 Phycobilisome Linker polypeptide syc1186_d PF00502 Phycobilisome protein syc1187_d PF00502 Phycobilisome protein syc1188_d PF01383 CpcD/allophycocyanin linker domain syc1189_d PF01098 Cell cycle protein syc1190_d PF11412 Disulphide bond corrector protein DsbC syc1190_d PF02683 Cytochrome C biogenesis protein transmembrane region syc1191_d PF05140 ResB-like family syc1192_d PF00543 Nitrogen regulatory protein P-II syc1193_c PF16363 GDP-mannose 4,6 dehydratase syc1194_c PF01479 S4 domain syc1194_c PF01728 FtsJ-like methyltransferase syc1198_d PF10397 Adenylosuccinate lyase C-terminus syc1198_d PF00206 Lyase syc1201_d PF02021 Uncharacterised protein family UPF0102 syc1202_d PF00398 Ribosomal RNA adenine dimethylase syc1203_d PF08544 GHMP kinases C terminal syc1203_d PF00288 GHMP kinases N terminal domain syc1204_d PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus syc1204_d PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus syc1204_d PF00361 Proton-conducting membrane transporter syc1206_d PF00582 Universal stress protein family syc1206_d PF00999 Sodium/hydrogen exchanger family syc1209_c PF02254 TrkA-N domain syc1209_c PF02080 TrkA-C domain syc1209_c PF00999 Sodium/hydrogen exchanger family syc1210_d PF13091 PLD-like domain syc1211_c PF00436 Single-strand binding protein family syc1213_d PF04085 rod shape-determining protein MreC syc1215_c PF00004 ATPase family associated with various cellular activities (AAA) syc1215_c PF17862 AAA+ lid domain syc1215_c PF06480 FtsH Extracellular syc1215_c PF01434 Peptidase family M41 syc1217_c PF14306 PUA-like domain syc1217_c PF01747 ATP-sulfurylase syc1218_c PF01716 Manganese-stabilising protein / photosystem II polypeptide syc1220_c PF02441 Flavoprotein syc1220_c PF04127 DNA / pantothenate metabolism flavoprotein syc1221_c PF10742 Protein of unknown function (DUF2555) syc1222_c PF01180 Dihydroorotate dehydrogenase syc1223_c PF07516 SecA Wing and Scaffold domain syc1223_c PF07517 SecA DEAD-like domain syc1223_c PF01043 SecA preprotein cross-linking domain syc1224_d PF00132 Bacterial transferase hexapeptide (six repeats) syc1224_d PF12804 MobA-like NTP transferase domain syc1225_c PF07885 Ion channel syc1225_c PF00027 Cyclic nucleotide-binding domain syc1227_c PF00936 BMC domain syc1228_c PF00936 BMC domain syc1229_d PF01207 Dihydrouridine synthase (Dus) syc1231_d PF00464 Serine hydroxymethyltransferase syc1232_d PF00953 Glycosyl transferase family 4 syc1233_d PF18146 Damage-inducible protein CinA KH domain syc1233_d PF00994 Probable molybdopterin binding domain syc1233_d PF02464 Competence-damaged protein syc1234_c PF00037 4Fe-4S binding domain syc1234_c PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit syc1234_c PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region syc1236_d PF00533 BRCA1 C Terminus (BRCT) domain syc1236_d PF03120 NAD-dependent DNA ligase OB-fold domain syc1236_d PF01653 NAD-dependent DNA ligase adenylation domain syc1236_d PF03119 NAD-dependent DNA ligase C4 zinc finger domain syc1236_d PF12826 Helix-hairpin-helix motif syc1237_d PF01565 FAD binding domain syc1237_d PF02913 FAD linked oxidases, C-terminal domain syc1238_c PF01934 Protein of unknown function DUF86 syc1240_c PF01121 Dephospho-CoA kinase syc1241_c PF02602 Uroporphyrinogen-III synthase HemD syc1242_c PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc1243_c PF13181 Tetratricopeptide repeat syc1243_c PF00535 Glycosyl transferase family 2 syc1244_d PF12697 Alpha/beta hydrolase family syc1246_c PF02527 rRNA small subunit methyltransferase G syc1247_d PF00226 DnaJ domain syc1247_d PF01556 DnaJ C terminal domain syc1249_c PF01255 Putative undecaprenyl diphosphate synthase syc1250_c PF02457 DisA bacterial checkpoint controller nucleotide-binding syc1251_c PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain syc1251_c PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain syc1252_d PF00583 Acetyltransferase (GNAT) family syc1253_d PF10431 C-terminal, D2-small domain, of ClpB protein syc1253_d PF07724 AAA domain (Cdc48 subfamily) syc1253_d PF00004 ATPase family associated with various cellular activities (AAA) syc1253_d PF02861 Clp amino terminal domain, pathogenicity island component syc1253_d PF17871 AAA lid domain syc1256_d PF01940 Integral membrane protein DUF92 syc1257_c PF01546 Peptidase family M20/M25/M40 syc1257_c PF07687 Peptidase dimerisation domain syc1259_c PF03989 DNA gyrase C-terminal domain, beta-propeller syc1259_c PF00521 DNA gyrase/topoisomerase IV, subunit A syc1264_c PF00005 ABC transporter syc1265_c PF00528 Binding-protein-dependent transport system inner membrane component syc1266_c PF00528 Binding-protein-dependent transport system inner membrane component syc1267_c PF00497 Bacterial extracellular solute-binding proteins, family 3 syc1269_d PF00343 Carbohydrate phosphorylase syc1270_d PF00762 Ferrochelatase syc1271_d PF01699 Sodium/calcium exchanger protein syc1272_c PF01938 TRAM domain syc1272_c PF13847 Methyltransferase domain syc1273_d PF00502 Phycobilisome protein syc1277_c PF00027 Cyclic nucleotide-binding domain syc1277_c PF13545 Crp-like helix-turn-helix domain syc1279_d PF00561 alpha/beta hydrolase fold syc1281_d PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) syc1286_c PF01195 Peptidyl-tRNA hydrolase syc1287_c PF02416 mttA/Hcf106 family syc1288_c PF00737 Photosystem II 10 kDa phosphoprotein syc1289_d PF02468 Photosystem II reaction centre N protein (psbN) syc1291_c PF02685 Glucokinase syc1294_d PF08369 Proto-chlorophyllide reductase 57 kD subunit syc1294_d PF00148 Nitrogenase component 1 type Oxidoreductase syc1295_c PF13419 Haloacid dehalogenase-like hydrolase syc1296_d PF00107 Zinc-binding dehydrogenase syc1296_d PF08240 Alcohol dehydrogenase GroES-like domain syc1300_c PF01264 Chorismate synthase syc1301_c PF07685 CobB/CobQ-like glutamine amidotransferase domain syc1303_d PF02545 Maf-like protein syc1306_c PF01467 Cytidylyltransferase-like syc1306_c PF00293 NUDIX domain syc1308_d PF01872 RibD C-terminal domain syc1308_d PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region syc1309_d PF00115 Cytochrome C and Quinol oxidase polypeptide I syc1314_d PF03092 BT1 family syc1315_d PF03055 Retinal pigment epithelial membrane protein syc1317_d PF00476 DNA polymerase family A syc1317_d PF02739 5'-3' exonuclease, N-terminal resolvase-like domain syc1317_d PF01612 3'-5' exonuclease syc1317_d PF01367 5'-3' exonuclease, C-terminal SAM fold syc1319_d PF16166 Chloroplast import apparatus Tic20-like syc1320_c PF00266 Aminotransferase class-V syc1321_d PF01888 CbiD syc1322_d PF00117 Glutamine amidotransferase class-I syc1322_d PF00958 GMP synthase C terminal domain syc1323_c PF13426 PAS domain syc1323_c PF01740 STAS domain syc1324_d PF01595 Cyclin M transmembrane N-terminal domain syc1324_d PF00571 CBS domain syc1326_c PF01384 Phosphate transporter family syc1331_c PF01588 Putative tRNA binding domain syc1332_d PF00005 ABC transporter syc1335_c PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc1336_d PF00459 Inositol monophosphatase family syc1337_c PF00291 Pyridoxal-phosphate dependent enzyme syc1337_c PF00571 CBS domain syc1338_c PF18318 Glutamine synthetase C-terminal domain syc1338_c PF12437 Glutamine synthetase type III N terminal syc1338_c PF00120 Glutamine synthetase, catalytic domain syc1345_c PF09367 CpeS-like protein syc1346_c PF07650 KH domain syc1346_c PF01926 50S ribosome-binding GTPase syc1348_d PF00581 Rhodanese-like domain syc1348_d PF00899 ThiF family syc1350_d PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I syc1350_d PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II syc1350_d PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain syc1350_d PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III syc1353_d PF00953 Glycosyl transferase family 4 syc1353_d PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 syc1354_c PF00072 Response regulator receiver domain syc1355_d PF00535 Glycosyl transferase family 2 syc1356_d PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain syc1356_d PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain syc1362_d PF00364 Biotin-requiring enzyme syc1362_d PF02779 Transketolase, pyrimidine binding domain syc1362_d PF02780 Transketolase, C-terminal domain syc1363_d PF07549 SecD/SecF GG Motif syc1363_d PF02355 Protein export membrane protein syc1364_d PF02355 Protein export membrane protein syc1364_d PF07549 SecD/SecF GG Motif syc1366_c PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain syc1366_c PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain syc1366_c PF00205 Thiamine pyrophosphate enzyme, central domain syc1368_c PF00762 Ferrochelatase syc1370_d PF08241 Methyltransferase domain syc1376_c PF11283 Protein of unknown function (DUF3084) syc1377_c PF13545 Crp-like helix-turn-helix domain syc1377_c PF00027 Cyclic nucleotide-binding domain syc1379_d PF00475 Imidazoleglycerol-phosphate dehydratase syc1381_d PF12792 CSS motif domain associated with EAL syc1381_d PF00563 EAL domain syc1383_d PF14437 MafB19-like deaminase syc1386_c PF02934 GatB/GatE catalytic domain syc1386_c PF02637 GatB domain syc1388_c PF00294 pfkB family carbohydrate kinase syc1392_c PF00875 DNA photolyase syc1392_c PF03441 FAD binding domain of DNA photolyase syc1393_c PF00012 Hsp70 protein syc1395_c PF00210 Ferritin-like domain syc1397_d PF01926 50S ribosome-binding GTPase syc1397_d PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal syc1398_d PF01467 Cytidylyltransferase-like syc1399_d PF00795 Carbon-nitrogen hydrolase syc1399_d PF02540 NAD synthase syc1403_c PF07992 Pyridine nucleotide-disulphide oxidoreductase syc1406_d PF02887 Pyruvate kinase, alpha/beta domain syc1406_d PF00224 Pyruvate kinase, barrel domain syc1406_d PF00391 PEP-utilising enzyme, mobile domain syc1407_d PF02514 CobN/Magnesium Chelatase syc1409_d PF00486 Transcriptional regulatory protein, C terminal syc1409_d PF00072 Response regulator receiver domain syc1410_c PF12169 DNA polymerase III subunits gamma and tau domain III syc1411_c PF02223 Thymidylate kinase syc1414_c PF00392 Bacterial regulatory proteins, gntR family syc1415_d PF01738 Dienelactone hydrolase family syc1418_d PF00128 Alpha amylase, catalytic domain syc1418_d PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) syc1422_c PF00664 ABC transporter transmembrane region syc1422_c PF00005 ABC transporter syc1424_d PF12704 MacB-like periplasmic core domain syc1424_d PF02687 FtsX-like permease family syc1424_d PF00005 ABC transporter syc1425_d PF00436 Single-strand binding protein family syc1426_d PF01894 Uncharacterised protein family UPF0047 syc1428_c PF00497 Bacterial extracellular solute-binding proteins, family 3 syc1429_c PF00557 Metallopeptidase family M24 syc1429_c PF05195 Aminopeptidase P, N-terminal domain syc1431_d PF02401 LytB protein syc1433_d PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family syc1435_d PF00005 ABC transporter syc1438_d PF05198 Translation initiation factor IF-3, N-terminal domain syc1438_d PF00707 Translation initiation factor IF-3, C-terminal domain syc1440_d PF00483 Nucleotidyl transferase syc1441_d PF16363 GDP-mannose 4,6 dehydratase syc1442_d PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase syc1443_d PF08484 C-methyltransferase C-terminal domain syc1443_d PF08421 Putative zinc binding domain syc1444_d PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family syc1445_d PF04989 Cephalosporin hydroxylase syc1449_c PF00535 Glycosyl transferase family 2 syc1450_d PF00114 Pilin (bacterial filament) syc1450_d PF07963 Prokaryotic N-terminal methylation motif syc1451_d PF00114 Pilin (bacterial filament) syc1451_d PF07963 Prokaryotic N-terminal methylation motif syc1457_d PF00830 Ribosomal L28 family syc1458_c PF03600 Citrate transporter syc1459_c PF02152 Dihydroneopterin aldolase syc1460_c PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase syc1460_c PF00393 6-phosphogluconate dehydrogenase, C-terminal domain syc1461_c PF00293 NUDIX domain syc1465_d PF01934 Protein of unknown function DUF86 syc1466_c PF00202 Aminotransferase class-III syc1467_c PF13649 Methyltransferase domain syc1468_c PF13649 Methyltransferase domain syc1470_c PF00155 Aminotransferase class I and II syc1471_d PF00248 Aldo/keto reductase family syc1474_d PF01699 Sodium/calcium exchanger protein syc1476_d PF02571 Precorrin-6x reductase CbiJ/CobK syc1478_c PF01077 Nitrite and sulphite reductase 4Fe-4S domain syc1478_c PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain syc1479_d PF02092 Glycyl-tRNA synthetase beta subunit syc1480_d PF01081 KDPG and KHG aldolase syc1482_d PF13640 2OG-Fe(II) oxygenase superfamily syc1482_d PF18331 PKHD-type hydroxylase C-terminal domain syc1485_d PF01250 Ribosomal protein S6 syc1487_d PF09335 SNARE associated Golgi protein syc1488_c PF00764 Arginosuccinate synthase syc1493_c PF00156 Phosphoribosyl transferase domain syc1493_c PF13537 Glutamine amidotransferase domain syc1494_c PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain syc1494_c PF02769 AIR synthase related protein, C-terminal domain syc1494_c PF00586 AIR synthase related protein, N-terminal domain syc1496_c PF00712 DNA polymerase III beta subunit, N-terminal domain syc1496_c PF02768 DNA polymerase III beta subunit, C-terminal domain syc1496_c PF02767 DNA polymerase III beta subunit, central domain syc1497_d PF13419 Haloacid dehalogenase-like hydrolase syc1498_c PF00291 Pyridoxal-phosphate dependent enzyme syc1500_d PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc1504_d PF03129 Anticodon binding domain syc1504_d PF00587 tRNA synthetase class II core domain (G, H, P, S and T) syc1504_d PF07973 Threonyl and Alanyl tRNA synthetase second additional domain syc1506_c PF00510 Cytochrome c oxidase subunit III syc1507_c PF00115 Cytochrome C and Quinol oxidase polypeptide I syc1508_c PF00116 Cytochrome C oxidase subunit II, periplasmic domain syc1508_c PF02790 Cytochrome C oxidase subunit II, transmembrane domain syc1509_d PF02628 Cytochrome oxidase assembly protein syc1510_d PF01040 UbiA prenyltransferase family syc1514_c PF02894 Oxidoreductase family, C-terminal alpha/beta domain syc1514_c PF01408 Oxidoreductase family, NAD-binding Rossmann fold syc1515_c PF00571 CBS domain syc1515_c PF01595 Cyclin M transmembrane N-terminal domain syc1515_c PF03471 Transporter associated domain syc1518_d PF00156 Phosphoribosyl transferase domain syc1521_c PF04029 2-phosphosulpholactate phosphatase syc1522_d PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase syc1524_c PF02656 Domain of unknown function (DUF202) syc1525_d PF02082 Transcriptional regulator syc1528_c PF00459 Inositol monophosphatase family syc1529_c PF00111 2Fe-2S iron-sulfur cluster binding domain syc1530_d PF00012 Hsp70 protein syc1531_d PF01556 DnaJ C terminal domain syc1531_d PF00226 DnaJ domain syc1533_d PF13580 SIS domain syc1535_c PF01297 Zinc-uptake complex component A periplasmic syc1536_d PF00005 ABC transporter syc1537_d PF00950 ABC 3 transport family syc1539_c PF00912 Transglycosylase syc1539_c PF00905 Penicillin binding protein transpeptidase domain syc1540_d PF01479 S4 domain syc1540_d PF00579 tRNA synthetases class I (W and Y) syc1541_d PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family syc1543_c PF00586 AIR synthase related protein, N-terminal domain syc1543_c PF02769 AIR synthase related protein, C-terminal domain syc1544_c PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD syc1545_d PF09285 Elongation factor P, C-terminal syc1545_d PF01132 Elongation factor P (EF-P) OB domain syc1545_d PF08207 Elongation factor P (EF-P) KOW-like domain syc1546_d PF00364 Biotin-requiring enzyme syc1547_c PF13476 AAA domain syc1548_c PF06838 Methionine gamma-lyase syc1551_d PF01281 Ribosomal protein L9, N-terminal domain syc1551_d PF03948 Ribosomal protein L9, C-terminal domain syc1552_c PF00266 Aminotransferase class-V syc1553_d PF12838 4Fe-4S dicluster domain syc1553_d PF04879 Molybdopterin oxidoreductase Fe4S4 domain syc1553_d PF00384 Molybdopterin oxidoreductase syc1553_d PF01568 Molydopterin dinucleotide binding domain syc1553_d PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region syc1554_d PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit syc1555_d PF00374 Nickel-dependent hydrogenase syc1557_d PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA syc1558_d PF02492 CobW/HypB/UreG, nucleotide-binding domain syc1559_d PF17788 HypF Kae1-like domain syc1559_d PF01300 Telomere recombination syc1559_d PF07503 HypF finger syc1559_d PF00708 Acylphosphatase syc1560_d PF01455 HupF/HypC family syc1562_c PF00694 Aconitase C-terminal domain syc1565_c PF00155 Aminotransferase class I and II syc1567_d PF03167 Uracil DNA glycosylase superfamily syc1568_d PF13442 Cytochrome C oxidase, cbb3-type, subunit III syc1569_c PF01245 Ribosomal protein L19 syc1572_d PF00574 Clp protease syc1573_d PF00574 Clp protease syc1574_d PF00226 DnaJ domain syc1574_d PF00684 DnaJ central domain syc1574_d PF01556 DnaJ C terminal domain syc1575_c PF00072 Response regulator receiver domain syc1575_c PF00990 Diguanylate cyclase, GGDEF domain syc1576_d PF00563 EAL domain syc1576_d PF01590 GAF domain syc1576_d PF00990 Diguanylate cyclase, GGDEF domain syc1576_d PF00360 Phytochrome region syc1578_d PF12697 Alpha/beta hydrolase family syc1579_c PF00889 Elongation factor TS syc1580_c PF00318 Ribosomal protein S2 syc1582_c PF08386 TAP-like protein syc1582_c PF00561 alpha/beta hydrolase fold syc1583_c PF06689 ClpX C4-type zinc finger syc1583_c PF07724 AAA domain (Cdc48 subfamily) syc1583_c PF10431 C-terminal, D2-small domain, of ClpB protein syc1584_c PF00574 Clp protease syc1585_c PF05698 Bacterial trigger factor protein (TF) C-terminus syc1585_c PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase syc1585_c PF05697 Bacterial trigger factor protein (TF) syc1586_d PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus syc1586_d PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus syc1588_d PF00563 EAL domain syc1588_d PF03707 Bacterial signalling protein N terminal repeat syc1588_d PF00990 Diguanylate cyclase, GGDEF domain syc1589_d PF00534 Glycosyl transferases group 1 syc1589_d PF08323 Starch synthase catalytic domain syc1591_d PF12705 PD-(D/E)XK nuclease superfamily syc1591_d PF13361 UvrD-like helicase C-terminal domain syc1591_d PF00580 UvrD/REP helicase N-terminal domain syc1592_c PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain syc1592_c PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain syc1593_c PF03437 BtpA family syc1594_d PF04055 Radical SAM superfamily syc1594_d PF18693 TRAM domain syc1594_d PF00919 Uncharacterized protein family UPF0004 syc1596_c PF01176 Translation initiation factor 1A / IF-1 syc1598_c PF07992 Pyridine nucleotide-disulphide oxidoreductase syc1600_d PF01507 Phosphoadenosine phosphosulfate reductase family syc1601_c PF01596 O-methyltransferase syc1603_d PF00106 short chain dehydrogenase syc1605_c PF00793 DAHP synthetase I family syc1607_d PF01145 SPFH domain / Band 7 family syc1607_d PF15975 Flotillin syc1609_d PF00334 Nucleoside diphosphate kinase syc1611_d PF02653 Branched-chain amino acid transport system / permease component syc1612_d PF02653 Branched-chain amino acid transport system / permease component syc1612_d PF11862 Domain of unknown function (DUF3382) syc1613_d PF00005 ABC transporter syc1613_d PF12399 Branched-chain amino acid ATP-binding cassette transporter syc1614_d PF00005 ABC transporter syc1615_c PF00986 DNA gyrase B subunit, carboxyl terminus syc1615_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc1615_c PF01751 Toprim domain syc1615_c PF00204 DNA gyrase B syc1619_c PF11910 Cyanobacterial and plant NDH-1 subunit O syc1624_d PF13640 2OG-Fe(II) oxygenase superfamily syc1626_d PF03912 Psb28 protein syc1627_d PF08338 Domain of unknown function (DUF1731) syc1627_d PF01370 NAD dependent epimerase/dehydratase family syc1629_c PF14698 Argininosuccinate lyase C-terminal syc1629_c PF00206 Lyase syc1631_c PF08673 Phosphoserine phosphatase RsbU, N-terminal domain syc1631_c PF07228 Stage II sporulation protein E (SpoIIE) syc1632_c PF02881 SRP54-type protein, helical bundle domain syc1632_c PF00448 SRP54-type protein, GTPase domain syc1633_c PF01029 NusB family syc1636_c PF00012 Hsp70 protein syc1638_c PF00072 Response regulator receiver domain syc1638_c PF00486 Transcriptional regulatory protein, C terminal syc1640_d PF04131 Putative N-acetylmannosamine-6-phosphate epimerase syc1641_d PF02772 S-adenosylmethionine synthetase, central domain syc1641_d PF02773 S-adenosylmethionine synthetase, C-terminal domain syc1641_d PF00438 S-adenosylmethionine synthetase, N-terminal domain syc1642_d PF02782 FGGY family of carbohydrate kinases, C-terminal domain syc1643_d PF04371 Porphyromonas-type peptidyl-arginine deiminase syc1644_d PF00145 C-5 cytosine-specific DNA methylase syc1644_d PF18284 DNA methylase N-terminal domain syc1647_c PF02091 Glycyl-tRNA synthetase alpha subunit syc1650_d PF00156 Phosphoribosyl transferase domain syc1651_d PF00528 Binding-protein-dependent transport system inner membrane component syc1656_d PF00263 Bacterial type II and III secretion system protein syc1656_d PF03958 Bacterial type II/III secretion system short domain syc1657_c PF00578 AhpC/TSA family syc1657_c PF10417 C-terminal domain of 1-Cys peroxiredoxin syc1658_c PF16360 GTP-binding GTPase Middle Region syc1658_c PF01926 50S ribosome-binding GTPase syc1658_c PF13167 GTP-binding GTPase N-terminal syc1660_d PF00557 Metallopeptidase family M24 syc1661_d PF12849 PBP superfamily domain syc1662_d PF12849 PBP superfamily domain syc1663_d PF00528 Binding-protein-dependent transport system inner membrane component syc1664_d PF00528 Binding-protein-dependent transport system inner membrane component syc1665_d PF00005 ABC transporter syc1666_d PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain syc1666_d PF01138 3' exoribonuclease family, domain 1 syc1666_d PF03725 3' exoribonuclease family, domain 2 syc1666_d PF00575 S1 RNA binding domain syc1666_d PF00013 KH domain syc1669_d PF06827 Zinc finger found in FPG and IleRS syc1669_d PF08264 Anticodon-binding domain of tRNA syc1669_d PF00133 tRNA synthetases class I (I, L, M and V) syc1670_d PF01625 Peptide methionine sulfoxide reductase syc1672_c PF10369 Small subunit of acetolactate synthase syc1673_c PF12697 Alpha/beta hydrolase family syc1673_c PF08241 Methyltransferase domain syc1674_c PF05685 Putative restriction endonuclease syc1677_d PF01618 MotA/TolQ/ExbB proton channel family syc1678_d PF02472 Biopolymer transport protein ExbD/TolR syc1679_c PF00581 Rhodanese-like domain syc1680_d PF08041 PetM family of cytochrome b6f complex subunit 7 syc1683_d PF13932 GidA associated domain syc1683_d PF01134 Glucose inhibited division protein A syc1685_d PF03239 Iron permease FTR1 family syc1686_c PF06426 Serine acetyltransferase, N-terminal syc1686_c PF00132 Bacterial transferase hexapeptide (six repeats) syc1688_d PF03466 LysR substrate binding domain syc1688_d PF00126 Bacterial regulatory helix-turn-helix protein, lysR family syc1690_d PF00486 Transcriptional regulatory protein, C terminal syc1690_d PF00072 Response regulator receiver domain syc1691_d PF00152 tRNA synthetases class II (D, K and N) syc1691_d PF01336 OB-fold nucleic acid binding domain syc1692_d PF01209 ubiE/COQ5 methyltransferase family syc1693_d PF16200 C-terminal region of band_7 syc1693_d PF01145 SPFH domain / Band 7 family syc1694_c PF08000 Bacterial PH domain syc1696_d PF00709 Adenylosuccinate synthetase syc1699_c PF05690 Thiazole biosynthesis protein ThiG syc1699_c PF01266 FAD dependent oxidoreductase syc1700_d PF00132 Bacterial transferase hexapeptide (six repeats) syc1700_d PF12804 MobA-like NTP transferase domain syc1700_d PF03479 Plants and Prokaryotes Conserved (PCC) domain syc1703_c PF04371 Porphyromonas-type peptidyl-arginine deiminase syc1704_d PF00011 Hsp20/alpha crystallin family syc1707_d PF03652 Holliday junction resolvase syc1712_c PF00749 tRNA synthetases class I (E and Q), catalytic domain syc1715_c PF01968 Hydantoinase/oxoprolinase syc1715_c PF05378 Hydantoinase/oxoprolinase N-terminal region syc1716_d PF00226 DnaJ domain syc1716_d PF01556 DnaJ C terminal domain syc1717_d PF00190 Cupin syc1719_c PF01924 Hydrogenase formation hypA family syc1720_c PF01180 Dihydroorotate dehydrogenase syc1721_c PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase syc1721_c PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain syc1721_c PF17147 Pyruvate:ferredoxin oxidoreductase core domain II syc1721_c PF10371 Domain of unknown function syc1721_c PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg syc1723_d PF04055 Radical SAM superfamily syc1724_c PF02548 Ketopantoate hydroxymethyltransferase syc1726_c PF08543 Phosphomethylpyrimidine kinase syc1727_c PF12327 FtsZ family, C-terminal domain syc1727_c PF00091 Tubulin/FtsZ family, GTPase domain syc1730_c PF07478 D-ala D-ala ligase C-terminus syc1730_c PF01820 D-ala D-ala ligase N-terminus syc1731_c PF01938 TRAM domain syc1731_c PF00919 Uncharacterized protein family UPF0004 syc1731_c PF04055 Radical SAM superfamily syc1732_d PF13378 Enolase C-terminal domain-like syc1732_d PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain syc1735_c PF00873 AcrB/AcrD/AcrF family syc1738_c PF16658 Class II release factor RF3, C-terminal domain syc1738_c PF00009 Elongation factor Tu GTP binding domain syc1741_c PF00348 Polyprenyl synthetase syc1743_c PF01520 N-acetylmuramoyl-L-alanine amidase syc1744_c PF00999 Sodium/hydrogen exchanger family syc1745_c PF00795 Carbon-nitrogen hydrolase syc1747_d PF13545 Crp-like helix-turn-helix domain syc1749_d PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase syc1750_c PF03099 Biotin/lipoate A/B protein ligase family syc1751_d PF02482 Sigma 54 modulation protein / S30EA ribosomal protein syc1751_d PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus syc1752_c PF01969 Protein of unknown function DUF111 syc1753_d PF01300 Telomere recombination syc1754_c PF00437 Type II/IV secretion system protein syc1755_c PF02547 Queuosine biosynthesis protein syc1758_d PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) syc1761_d PF02605 Photosystem I reaction centre subunit XI syc1762_c PF02361 Cobalt transport protein syc1763_c PF01926 50S ribosome-binding GTPase syc1763_c PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal syc1767_d PF00316 Fructose-1-6-bisphosphatase, N-terminal domain syc1768_d PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain syc1768_d PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain syc1769_d PF10128 Glucose-6-phosphate dehydrogenase subunit syc1769_d PF01471 Putative peptidoglycan binding domain syc1770_c PF00032 Cytochrome b(C-terminal)/b6/petD syc1771_c PF00033 Cytochrome b/b6/petB syc1772_d PF03572 Peptidase family S41 syc1772_d PF00595 PDZ domain syc1773_d PF01966 HD domain syc1778_c PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain syc1778_c PF02951 Prokaryotic glutathione synthetase, N-terminal domain syc1779_c PF00462 Glutaredoxin syc1783_c PF01381 Helix-turn-helix syc1785_d PF00403 Heavy-metal-associated domain syc1786_c PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain syc1786_c PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain syc1787_c PF00006 ATP synthase alpha/beta family, nucleotide-binding domain syc1787_c PF02874 ATP synthase alpha/beta family, beta-barrel domain syc1788_d PF00166 Chaperonin 10 Kd subunit syc1789_d PF00118 TCP-1/cpn60 chaperonin family syc1790_c PF04101 Glycosyltransferase family 28 C-terminal domain syc1790_c PF03033 Glycosyltransferase family 28 N-terminal domain syc1792_d PF00282 Pyridoxal-dependent decarboxylase conserved domain syc1793_d PF10417 C-terminal domain of 1-Cys peroxiredoxin syc1793_d PF00578 AhpC/TSA family syc1794_c PF08669 Glycine cleavage T-protein C-terminal barrel domain syc1794_c PF01571 Aminomethyltransferase folate-binding domain syc1796_c PF00072 Response regulator receiver domain syc1796_c PF00486 Transcriptional regulatory protein, C terminal syc1797_c PF01513 ATP-NAD kinase syc1798_c PF00809 Pterin binding enzyme syc1801_c PF00312 Ribosomal protein S15 syc1802_c PF01330 RuvA N terminal domain syc1802_c PF07499 RuvA, C-terminal domain syc1803_d PF00923 Transaldolase/Fructose-6-phosphate aldolase syc1803_d PF13202 EF hand syc1804_d PF00120 Glutamine synthetase, catalytic domain syc1809_d PF00571 CBS domain syc1809_d PF01380 SIS domain syc1810_d PF02348 Cytidylyltransferase syc1811_d PF00793 DAHP synthetase I family syc1815_d PF00465 Iron-containing alcohol dehydrogenase syc1816_d PF00561 alpha/beta hydrolase fold syc1816_d PF08386 TAP-like protein syc1817_c PF04474 Protein of unknown function (DUF554) syc1818_d PF00512 His Kinase A (phospho-acceptor) domain syc1818_d PF00672 HAMP domain syc1818_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc1818_d PF13426 PAS domain syc1821_c PF00909 Ammonium Transporter Family syc1825_c PF17863 AAA lid domain syc1825_c PF13519 von Willebrand factor type A domain syc1825_c PF01078 Magnesium chelatase, subunit ChlI syc1827_d PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) syc1831_d PF02277 Phosphoribosyltransferase syc1833_c PF00171 Aldehyde dehydrogenase family syc1834_d PF00072 Response regulator receiver domain syc1834_d PF00196 Bacterial regulatory proteins, luxR family syc1835_d PF03129 Anticodon binding domain syc1835_d PF13393 Histidyl-tRNA synthetase syc1839_c PF05239 PRC-barrel domain syc1839_c PF01782 RimM N-terminal domain syc1840_c PF00155 Aminotransferase class I and II syc1845_d PF04107 Glutamate-cysteine ligase family 2(GCS2) syc1846_d PF00311 Phosphoenolpyruvate carboxylase syc1848_d PF02463 RecF/RecN/SMC N terminal domain syc1849_d PF02675 S-adenosylmethionine decarboxylase syc1850_d PF00216 Bacterial DNA-binding protein syc1851_c PF01624 MutS domain I syc1851_c PF05190 MutS family domain IV syc1851_c PF05192 MutS domain III syc1851_c PF05188 MutS domain II syc1851_c PF00488 MutS domain V syc1853_d PF01737 YCF9 syc1854_d PF00885 6,7-dimethyl-8-ribityllumazine synthase syc1855_d PF00171 Aldehyde dehydrogenase family syc1858_c PF00583 Acetyltransferase (GNAT) family syc1860_d PF07690 Major Facilitator Superfamily syc1862_d PF00005 ABC transporter syc1862_d PF08352 Oligopeptide/dipeptide transporter, C-terminal region syc1863_c PF01746 tRNA (Guanine-1)-methyltransferase syc1864_c PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N syc1865_d PF00297 Ribosomal protein L3 syc1866_d PF00573 Ribosomal protein L4/L1 family syc1867_d PF00276 Ribosomal protein L23 syc1868_d PF00181 Ribosomal Proteins L2, RNA binding domain syc1868_d PF03947 Ribosomal Proteins L2, C-terminal domain syc1869_d PF00203 Ribosomal protein S19 syc1870_d PF00237 Ribosomal protein L22p/L17e syc1871_d PF07650 KH domain syc1871_d PF00189 Ribosomal protein S3, C-terminal domain syc1872_d PF00252 Ribosomal protein L16p/L10e syc1873_d PF00831 Ribosomal L29 protein syc1874_d PF00366 Ribosomal protein S17 syc1875_d PF00238 Ribosomal protein L14p/L23e syc1876_d PF00467 KOW motif syc1876_d PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 syc1877_d PF00673 ribosomal L5P family C-terminus syc1877_d PF00281 Ribosomal protein L5 syc1878_d PF00410 Ribosomal protein S8 syc1879_d PF00347 Ribosomal protein L6 syc1880_d PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast syc1881_d PF03719 Ribosomal protein S5, C-terminal domain syc1881_d PF00333 Ribosomal protein S5, N-terminal domain syc1882_d PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A syc1883_d PF00344 SecY translocase syc1885_d PF00444 Ribosomal protein L36 syc1886_d PF00416 Ribosomal protein S13/S18 syc1887_d PF00411 Ribosomal protein S11 syc1888_d PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain syc1888_d PF03118 Bacterial RNA polymerase, alpha chain C terminal domain syc1888_d PF01000 RNA polymerase Rpb3/RpoA insert domain syc1889_d PF01196 Ribosomal protein L17 syc1890_d PF01416 tRNA pseudouridine synthase syc1891_d PF00572 Ribosomal protein L13 syc1892_d PF00380 Ribosomal protein S9/S16 syc1893_d PF01197 Ribosomal protein L31 syc1894_d PF00472 RF-1 domain syc1894_d PF03462 PCRF domain syc1896_d PF00842 Alanine racemase, C-terminal domain syc1896_d PF01168 Alanine racemase, N-terminal domain syc1898_d PF17657 Bacterial DNA polymerase III alpha subunit finger domain syc1898_d PF07733 Bacterial DNA polymerase III alpha NTPase domain syc1898_d PF14579 Helix-hairpin-helix motif syc1898_d PF01336 OB-fold nucleic acid binding domain syc1898_d PF02811 PHP domain syc1900_c PF00696 Amino acid kinase family syc1900_c PF01472 PUA domain syc1902_d PF00211 Adenylate and Guanylate cyclase catalytic domain syc1905_c PF00990 Diguanylate cyclase, GGDEF domain syc1905_c PF00563 EAL domain syc1905_c PF03707 Bacterial signalling protein N terminal repeat syc1905_c PF13188 PAS domain syc1907_c PF01641 SelR domain syc1908_d PF00425 chorismate binding enzyme syc1912_c PF13230 Glutamine amidotransferases class-II syc1913_d PF00075 RNase H syc1914_d PF00571 CBS domain syc1914_d PF02163 Peptidase family M50 syc1915_d PF00578 AhpC/TSA family syc1916_d PF02142 MGS-like domain syc1916_d PF00781 Diacylglycerol kinase catalytic domain syc1917_d PF04020 Mycobacterial 4 TMS phage holin, superfamily IV syc1921_c PF13545 Crp-like helix-turn-helix domain syc1924_d PF00210 Ferritin-like domain syc1925_c PF01475 Ferric uptake regulator family syc1927_c PF00580 UvrD/REP helicase N-terminal domain syc1927_c PF13361 UvrD-like helicase C-terminal domain syc1934_c PF00266 Aminotransferase class-V syc1935_c PF00561 alpha/beta hydrolase fold syc1936_c PF00502 Phycobilisome protein syc1938_d PF03951 Glutamine synthetase, beta-Grasp domain syc1938_d PF00120 Glutamine synthetase, catalytic domain syc1941_d PF00535 Glycosyl transferase family 2 syc1941_d PF03170 Bacterial cellulose synthase subunit syc1941_d PF07238 PilZ domain syc1944_c PF00005 ABC transporter syc1946_d PF00795 Carbon-nitrogen hydrolase syc1947_d PF00565 Staphylococcal nuclease homologue syc1948_c PF00291 Pyridoxal-phosphate dependent enzyme syc1949_d PF01253 Translation initiation factor SUI1 syc1953_c PF00043 Glutathione S-transferase, C-terminal domain syc1953_c PF13417 Glutathione S-transferase, N-terminal domain syc1955_c PF02514 CobN/Magnesium Chelatase syc1955_c PF11965 Domain of unknown function (DUF3479) syc1956_d PF05173 Dihydrodipicolinate reductase, C-terminus syc1956_d PF01113 Dihydrodipicolinate reductase, N-terminus syc1958_d PF11741 AMIN domain syc1958_d PF01520 N-acetylmuramoyl-L-alanine amidase syc1960_c PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I syc1960_c PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain syc1960_c PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III syc1960_c PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II syc1964_d PF00085 Thioredoxin syc1965_c PF04485 Phycobilisome degradation protein nblA syc1968_d PF00850 Histone deacetylase domain syc1969_d PF02885 Glycosyl transferase family, helical bundle domain syc1969_d PF00591 Glycosyl transferase family, a/b domain syc1970_d PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain syc1970_d PF00117 Glutamine amidotransferase class-I syc1972_d PF00636 Ribonuclease III domain syc1973_d PF00588 SpoU rRNA Methylase family syc1973_d PF08032 RNA 2'-O ribose methyltransferase substrate binding syc1975_d PF01425 Amidase syc1978_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc1978_c PF00512 His Kinase A (phospho-acceptor) domain syc1978_c PF07689 KaiB domain syc1979_c PF13793 N-terminal domain of ribose phosphate pyrophosphokinase syc1979_c PF14572 Phosphoribosyl synthetase-associated domain syc1981_c PF00480 ROK family syc1982_d PF02911 Formyl transferase, C-terminal domain syc1982_d PF00551 Formyl transferase syc1983_c PF00005 ABC transporter syc1983_c PF00664 ABC transporter transmembrane region syc1986_d PF00005 ABC transporter syc1987_d PF00528 Binding-protein-dependent transport system inner membrane component syc1988_d PF00005 ABC transporter syc1989_d PF02560 Cyanate lyase C-terminal domain syc1992_c PF00483 Nucleotidyl transferase syc1993_c PF16363 GDP-mannose 4,6 dehydratase syc1994_c PF04321 RmlD substrate binding domain syc1995_c PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase syc1997_c PF01590 GAF domain syc1997_c PF00563 EAL domain syc1997_c PF00360 Phytochrome region syc1997_c PF00990 Diguanylate cyclase, GGDEF domain syc1999_c PF02469 Fasciclin domain syc2001_c PF00361 Proton-conducting membrane transporter syc2002_c PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus syc2002_c PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus syc2002_c PF00361 Proton-conducting membrane transporter syc2003_c PF01842 ACT domain syc2003_c PF00742 Homoserine dehydrogenase syc2003_c PF03447 Homoserine dehydrogenase, NAD binding domain syc2004_d PF07884 Vitamin K epoxide reductase family syc2006_c PF00977 Histidine biosynthesis protein syc2009_d PF01040 UbiA prenyltransferase family syc2010_c PF01914 MarC family integral membrane protein syc2011_d PF00679 Elongation factor G C-terminus syc2011_d PF14492 Elongation Factor G, domain II syc2011_d PF03764 Elongation factor G, domain IV syc2011_d PF00009 Elongation factor Tu GTP binding domain syc2012_d PF00535 Glycosyl transferase family 2 syc2013_c PF09363 XFP C-terminal domain syc2013_c PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase syc2013_c PF09364 XFP N-terminal domain syc2014_d PF00871 Acetokinase family syc2019_c PF01556 DnaJ C terminal domain syc2019_c PF00684 DnaJ central domain syc2019_c PF00226 DnaJ domain syc2020_c PF00012 Hsp70 protein syc2021_c PF01025 GrpE syc2022_d PF00437 Type II/IV secretion system protein syc2022_d PF05157 Type II secretion system (T2SS), protein E, N-terminal domain syc2023_d PF00437 Type II/IV secretion system protein syc2024_d PF00482 Type II secretion system (T2SS), protein F syc2027_d PF01207 Dihydrouridine synthase (Dus) syc2029_c PF01409 tRNA synthetases class II core domain (F) syc2029_c PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain syc2030_d PF01975 Survival protein SurE syc2033_d PF01168 Alanine racemase, N-terminal domain syc2034_d PF04472 Cell division protein SepF syc2035_d PF14748 Pyrroline-5-carboxylate reductase dimerisation syc2035_d PF03807 NADP oxidoreductase coenzyme F420-dependent syc2036_c PF02660 Glycerol-3-phosphate acyltransferase syc2038_c PF01494 FAD binding domain syc2040_c PF00326 Prolyl oligopeptidase family syc2044_d PF00223 Photosystem I psaA/psaB protein syc2045_d PF00223 Photosystem I psaA/psaB protein syc2046_c PF02347 Glycine cleavage system P-protein syc2047_c PF01597 Glycine cleavage H-protein syc2048_d PF06470 SMC proteins Flexible Hinge Domain syc2048_d PF02463 RecF/RecN/SMC N terminal domain syc2050_d PF02675 S-adenosylmethionine decarboxylase syc2053_c PF03023 Lipid II flippase MurJ syc2054_d PF17746 SfsA N-terminal OB domain syc2054_d PF03749 Sugar fermentation stimulation protein RE domain syc2058_d PF00355 Rieske [2Fe-2S] domain syc2061_c PF00201 UDP-glucoronosyl and UDP-glucosyl transferase syc2061_c PF03033 Glycosyltransferase family 28 N-terminal domain syc2063_c PF07690 Major Facilitator Superfamily syc2064_d PF09367 CpeS-like protein syc2065_d PF00427 Phycobilisome Linker polypeptide syc2066_c PF00342 Phosphoglucose isomerase syc2067_c PF13439 Glycosyltransferase Family 4 syc2068_c PF00535 Glycosyl transferase family 2 syc2069_c PF02397 Bacterial sugar transferase syc2070_c PF13439 Glycosyltransferase Family 4 syc2070_c PF00534 Glycosyl transferases group 1 syc2072_d PF02576 RimP N-terminal domain syc2073_d PF13184 NusA-like KH domain syc2073_d PF08529 NusA N-terminal domain syc2073_d PF00575 S1 RNA binding domain syc2075_d PF00009 Elongation factor Tu GTP binding domain syc2075_d PF04760 Translation initiation factor IF-2, N-terminal region syc2075_d PF11987 Translation-initiation factor 2 syc2078_c PF02325 YGGT family syc2079_d PF06596 Photosystem II reaction centre X protein (PsbX) syc2080_d PF07444 Ycf66 protein N-terminus syc2083_c PF08486 Stage II sporulation protein syc2084_d PF00753 Metallo-beta-lactamase superfamily syc2084_d PF12706 Beta-lactamase superfamily domain syc2085_d PF14495 Cytochrome c-550 domain syc2086_c PF13476 AAA domain syc2087_c PF00753 Metallo-beta-lactamase superfamily syc2087_c PF01613 Flavin reductase like domain syc2088_d PF01467 Cytidylyltransferase-like syc2091_c PF04542 Sigma-70 region 2 syc2091_c PF04545 Sigma-70, region 4 syc2095_d PF03775 Septum formation inhibitor MinC, C-terminal domain syc2096_d PF00912 Transglycosylase syc2096_d PF17092 Penicillin-binding protein OB-like domain syc2096_d PF00905 Penicillin binding protein transpeptidase domain syc2097_d PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) syc2099_d PF00762 Ferrochelatase syc2101_d PF01502 Phosphoribosyl-AMP cyclohydrolase syc2101_d PF01503 Phosphoribosyl-ATP pyrophosphohydrolase syc2103_c PF00596 Class II Aldolase and Adducin N-terminal domain syc2104_d PF01008 Initiation factor 2 subunit family syc2105_d PF01741 Large-conductance mechanosensitive channel, MscL syc2106_d PF01169 Uncharacterized protein family UPF0016 syc2107_d PF01545 Cation efflux family syc2110_d PF05193 Peptidase M16 inactive domain syc2110_d PF00675 Insulinase (Peptidase family M16) syc2113_c PF01593 Flavin containing amine oxidoreductase syc2114_d PF10664 Cyanobacterial and plastid NDH-1 subunit M syc2118_d PF00085 Thioredoxin syc2119_d PF00361 Proton-conducting membrane transporter syc2119_d PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus syc2119_d PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus syc2120_d PF00361 Proton-conducting membrane transporter syc2123_d PF00483 Nucleotidyl transferase syc2125_d PF01546 Peptidase family M20/M25/M40 syc2125_d PF07687 Peptidase dimerisation domain syc2128_c PF02673 Bacitracin resistance protein BacA syc2130_c PF02541 Ppx/GppA phosphatase family syc2131_d PF01040 UbiA prenyltransferase family syc2132_d PF17676 LD-carboxypeptidase C-terminal domain syc2132_d PF02016 LD-carboxypeptidase N-terminal domain syc2133_c PF06298 Photosystem II protein Y (PsbY) syc2134_c PF00132 Bacterial transferase hexapeptide (six repeats) syc2136_c PF04073 Aminoacyl-tRNA editing domain syc2136_c PF00587 tRNA synthetase class II core domain (G, H, P, S and T) syc2136_c PF03129 Anticodon binding domain syc2139_c PF01039 Carboxyl transferase domain syc2139_c PF17848 Acetyl-coA carboxylase zinc finger domain syc2140_d PF06418 CTP synthase N-terminus syc2140_d PF00117 Glutamine amidotransferase class-I syc2145_c PF11378 Protein of unknown function (DUF3181) syc2149_d PF12826 Helix-hairpin-helix motif syc2149_d PF02151 UvrB/uvrC motif syc2149_d PF08459 UvrC Helix-hairpin-helix N-terminal syc2149_d PF01541 GIY-YIG catalytic domain syc2150_c PF00676 Dehydrogenase E1 component syc2152_c PF00578 AhpC/TSA family syc2153_c PF05430 S-adenosyl-L-methionine-dependent methyltransferase syc2153_c PF01266 FAD dependent oxidoreductase syc2155_c PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain syc2155_c PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain syc2156_d PF01758 Sodium Bile acid symporter family syc2157_d PF01625 Peptide methionine sulfoxide reductase syc2159_d PF06750 Bacterial Peptidase A24 N-terminal domain syc2159_d PF01478 Type IV leader peptidase family syc2160_c PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family syc2161_c PF01070 FMN-dependent dehydrogenase syc2163_c PF00149 Calcineurin-like phosphoesterase syc2165_c PF00266 Aminotransferase class-V syc2167_c PF01678 Diaminopimelate epimerase syc2169_d PF01551 Peptidase family M23 syc2169_d PF08460 Bacterial SH3 domain syc2171_d PF04542 Sigma-70 region 2 syc2171_d PF08281 Sigma-70, region 4 syc2174_d PF13603 Leucyl-tRNA synthetase, Domain 2 syc2174_d PF08264 Anticodon-binding domain of tRNA syc2174_d PF09334 tRNA synthetases class I (M) syc2174_d PF00133 tRNA synthetases class I (I, L, M and V) syc2176_c PF13439 Glycosyltransferase Family 4 syc2176_c PF00534 Glycosyl transferases group 1 syc2177_c PF00892 EamA-like transporter family syc2178_d PF01343 Peptidase family S49 syc2182_c PF07465 Photosystem I protein M (PsaM) syc2183_d PF01895 PhoU domain syc2184_d PF08206 Ribonuclease B OB domain syc2184_d PF00575 S1 RNA binding domain syc2184_d PF17876 Cold shock domain syc2184_d PF00773 RNB domain syc2185_d PF02441 Flavoprotein syc2188_d PF02915 Rubrerythrin syc2189_d PF09312 SurA N-terminal domain syc2189_d PF00639 PPIC-type PPIASE domain syc2190_d PF00005 ABC transporter syc2190_d PF03412 Peptidase C39 family syc2190_d PF00664 ABC transporter transmembrane region syc2193_d PF00534 Glycosyl transferases group 1 syc2195_c PF00692 dUTPase syc2197_d PF00330 Aconitase family (aconitate hydratase) syc2199_d PF01960 ArgJ family syc2202_d PF00005 ABC transporter syc2202_d PF12399 Branched-chain amino acid ATP-binding cassette transporter syc2206_d PF09210 Domain of unknown function (DUF1957) syc2206_d PF03065 Glycosyl hydrolase family 57 syc2209_c PF01368 DHH family syc2209_c PF10141 Single-strand DNA-specific exonuclease, C terminal domain syc2209_c PF17768 RecJ OB domain syc2209_c PF02272 DHHA1 domain syc2210_d PF13419 Haloacid dehalogenase-like hydrolase syc2211_d PF00294 pfkB family carbohydrate kinase syc2211_d PF01467 Cytidylyltransferase-like syc2212_d PF16416 ARM-like repeat domain, GUN4-N terminal syc2212_d PF05419 GUN4-like syc2213_d PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) syc2214_d PF00890 FAD binding domain syc2214_d PF02910 Fumarate reductase flavoprotein C-term syc2215_d PF17863 AAA lid domain syc2215_d PF07726 ATPase family associated with various cellular activities (AAA) syc2217_d PF13559 Domain of unknown function (DUF4129) syc2217_d PF11992 Domain of unknown function (DUF3488) syc2217_d PF01841 Transglutaminase-like superfamily syc2219_d PF01523 Putative modulator of DNA gyrase syc2220_d PF00588 SpoU rRNA Methylase family syc2221_c PF00486 Transcriptional regulatory protein, C terminal syc2221_c PF00072 Response regulator receiver domain syc2222_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc2222_c PF00512 His Kinase A (phospho-acceptor) domain syc2222_c PF00672 HAMP domain syc2222_c PF13426 PAS domain syc2225_d PF00873 AcrB/AcrD/AcrF family syc2227_c PF03441 FAD binding domain of DNA photolyase syc2227_c PF00875 DNA photolyase syc2229_c PF01513 ATP-NAD kinase syc2230_c PF01300 Telomere recombination syc2231_c PF05175 Methyltransferase small domain syc2234_d PF00486 Transcriptional regulatory protein, C terminal syc2234_d PF00072 Response regulator receiver domain syc2235_c PF00990 Diguanylate cyclase, GGDEF domain syc2235_c PF03707 Bacterial signalling protein N terminal repeat syc2235_c PF00563 EAL domain syc2236_c PF01126 Heme oxygenase syc2237_d PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase syc2237_d PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase syc2238_c PF14437 MafB19-like deaminase syc2239_c PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain syc2239_c PF07685 CobB/CobQ-like glutamine amidotransferase domain syc2240_c PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc2241_c PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc2242_c PF02570 Precorrin-8X methylmutase syc2243_c PF01077 Nitrite and sulphite reductase 4Fe-4S domain syc2243_c PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain syc2244_d PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases syc2245_c PF04542 Sigma-70 region 2 syc2245_c PF04539 Sigma-70 region 3 syc2245_c PF00140 Sigma-70 factor, region 1.2 syc2245_c PF04545 Sigma-70, region 4 syc2246_d PF01118 Semialdehyde dehydrogenase, NAD binding domain syc2246_d PF02774 Semialdehyde dehydrogenase, dimerisation domain syc2247_d PF00701 Dihydrodipicolinate synthetase family syc2248_d PF17770 Ribonuclease J C-terminal domain syc2248_d PF07521 Zn-dependent metallo-hydrolase RNA specificity domain syc2248_d PF00753 Metallo-beta-lactamase superfamily syc2250_d PF14489 QueF-like protein syc2253_d PF08245 Mur ligase middle domain syc2253_d PF02875 Mur ligase family, glutamate ligase domain syc2253_d PF01225 Mur ligase family, catalytic domain syc2256_d PF00148 Nitrogenase component 1 type Oxidoreductase syc2256_d PF08369 Proto-chlorophyllide reductase 57 kD subunit syc2259_c PF01694 Rhomboid family syc2261_c PF13614 AAA domain syc2262_d PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase syc2262_d PF08264 Anticodon-binding domain of tRNA syc2262_d PF10458 Valyl tRNA synthetase tRNA binding arm syc2262_d PF00133 tRNA synthetases class I (I, L, M and V) syc2263_d PF00478 IMP dehydrogenase / GMP reductase domain syc2264_d PF00085 Thioredoxin syc2265_c PF00977 Histidine biosynthesis protein syc2269_c PF01066 CDP-alcohol phosphatidyltransferase syc2270_d PF00571 CBS domain syc2270_d PF00478 IMP dehydrogenase / GMP reductase domain syc2274_d PF01027 Inhibitor of apoptosis-promoting Bax1 syc2275_c PF01872 RibD C-terminal domain syc2277_d PF00990 Diguanylate cyclase, GGDEF domain syc2277_d PF00072 Response regulator receiver domain syc2278_d PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc2278_d PF00512 His Kinase A (phospho-acceptor) domain syc2278_d PF00072 Response regulator receiver domain syc2278_d PF00672 HAMP domain syc2278_d PF01627 Hpt domain syc2278_d PF17149 Periplasmic sensor domain found in signal transduction proteins syc2279_d PF00072 Response regulator receiver domain syc2279_d PF00486 Transcriptional regulatory protein, C terminal syc2280_d PF07885 Ion channel syc2280_d PF00027 Cyclic nucleotide-binding domain syc2281_d PF00183 Hsp90 protein syc2282_c PF08448 PAS fold syc2282_c PF08447 PAS fold syc2282_c PF13426 PAS domain syc2282_c PF05231 MASE1 syc2282_c PF00563 EAL domain syc2282_c PF00990 Diguanylate cyclase, GGDEF domain syc2283_c PF01613 Flavin reductase like domain syc2283_c PF00258 Flavodoxin syc2284_c PF00753 Metallo-beta-lactamase superfamily syc2284_c PF01613 Flavin reductase like domain syc2285_d PF03309 Type III pantothenate kinase syc2286_c PF00293 NUDIX domain syc2286_c PF13344 Haloacid dehalogenase-like hydrolase syc2287_c PF00578 AhpC/TSA family syc2290_d PF01475 Ferric uptake regulator family syc2291_d PF12452 Protein of unknown function (DUF3685) syc2291_d PF00072 Response regulator receiver domain syc2292_c PF12697 Alpha/beta hydrolase family syc2294_c PF02769 AIR synthase related protein, C-terminal domain syc2294_c PF00586 AIR synthase related protein, N-terminal domain syc2298_d PF01668 SmpB protein syc2299_c PF00155 Aminotransferase class I and II syc2300_c PF00085 Thioredoxin syc2301_c PF00490 Delta-aminolevulinic acid dehydratase syc2302_d PF07995 Glucose / Sorbosone dehydrogenase syc2303_c PF02086 D12 class N6 adenine-specific DNA methyltransferase syc2304_c PF00226 DnaJ domain syc2304_c PF01556 DnaJ C terminal domain syc2306_d PF01592 NifU-like N terminal domain syc2307_d PF10726 Protein of function (DUF2518) syc2309_c PF04542 Sigma-70 region 2 syc2309_c PF04539 Sigma-70 region 3 syc2309_c PF04545 Sigma-70, region 4 syc2310_c PF03699 Uncharacterised protein family (UPF0182) syc2311_d PF00291 Pyridoxal-phosphate dependent enzyme syc2312_d PF02597 ThiS family syc2313_c PF01119 DNA mismatch repair protein, C-terminal domain syc2313_c PF08676 MutL C terminal dimerisation domain syc2314_c PF02463 RecF/RecN/SMC N terminal domain syc2315_d PF03109 ABC1 family syc2317_c PF02562 PhoH-like protein syc2318_c PF01165 Ribosomal protein S21 syc2320_c PF00886 Ribosomal protein S16 syc2321_c PF02978 Signal peptide binding domain syc2321_c PF00448 SRP54-type protein, GTPase domain syc2321_c PF02881 SRP54-type protein, helical bundle domain syc2325_d PF01654 Cytochrome bd terminal oxidase subunit I syc2329_c PF00459 Inositol monophosphatase family syc2330_c PF03209 PUCC protein syc2332_c PF05222 Alanine dehydrogenase/PNT, N-terminal domain syc2332_c PF01262 Alanine dehydrogenase/PNT, C-terminal domain syc2333_d PF00762 Ferrochelatase syc2334_d PF04055 Radical SAM superfamily syc2336_d PF00474 Sodium:solute symporter family syc2338_d PF00583 Acetyltransferase (GNAT) family syc2345_d PF04545 Sigma-70, region 4 syc2345_d PF00140 Sigma-70 factor, region 1.2 syc2345_d PF04539 Sigma-70 region 3 syc2345_d PF04542 Sigma-70 region 2 syc2348_c PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit syc2349_c PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain syc2349_c PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain syc2350_d PF08245 Mur ligase middle domain syc2350_d PF02875 Mur ligase family, glutamate ligase domain syc2350_d PF01225 Mur ligase family, catalytic domain syc2351_d PF01565 FAD binding domain syc2351_d PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain syc2353_c PF00266 Aminotransferase class-V syc2354_c PF01458 Uncharacterized protein family (UPF0051) syc2355_c PF00005 ABC transporter syc2356_c PF01458 Uncharacterized protein family (UPF0051) syc2357_c PF02943 Ferredoxin thioredoxin reductase catalytic beta chain syc2360_d PF00156 Phosphoribosyl transferase domain syc2362_c PF02702 Osmosensitive K+ channel His kinase sensor domain syc2365_d PF01252 Signal peptidase (SPase) II syc2366_c PF00392 Bacterial regulatory proteins, gntR family syc2366_c PF00155 Aminotransferase class I and II syc2372_d PF00180 Isocitrate/isopropylmalate dehydrogenase syc2373_d PF01565 FAD binding domain syc2374_d PF02754 Cysteine-rich domain syc2374_d PF13183 4Fe-4S dicluster domain syc2375_d PF03707 Bacterial signalling protein N terminal repeat syc2375_d PF00990 Diguanylate cyclase, GGDEF domain syc2375_d PF00563 EAL domain syc2377_c PF00561 alpha/beta hydrolase fold syc2381_c PF01192 RNA polymerase Rpb6 syc2382_d PF01926 50S ribosome-binding GTPase syc2382_d PF12631 MnmE helical domain syc2382_d PF10396 GTP-binding protein TrmE N-terminus syc2383_c PF01432 Peptidase family M3 syc2386_c PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) syc2388_d PF01074 Glycosyl hydrolases family 38 N-terminal domain syc2388_d PF07748 Glycosyl hydrolases family 38 C-terminal domain syc2388_d PF09261 Alpha mannosidase middle domain syc2390_d PF01370 NAD dependent epimerase/dehydratase family syc2391_d PF01554 MatE syc2392_c PF01638 HxlR-like helix-turn-helix syc2394_d PF17954 Quercetinase C-terminal cupin domain syc2394_d PF02678 Pirin syc2396_c PF00521 DNA gyrase/topoisomerase IV, subunit A syc2396_c PF03989 DNA gyrase C-terminal domain, beta-propeller syc2398_d PF14338 Mrr N-terminal domain syc2398_d PF04471 Restriction endonuclease syc2401_c PF00581 Rhodanese-like domain syc2402_c PF00528 Binding-protein-dependent transport system inner membrane component syc2403_c PF00528 Binding-protein-dependent transport system inner membrane component syc2405_c PF00528 Binding-protein-dependent transport system inner membrane component syc2406_c PF13545 Crp-like helix-turn-helix domain syc2407_c PF09383 NIL domain syc2408_c PF00528 Binding-protein-dependent transport system inner membrane component syc2410_d PF00005 ABC transporter syc2410_d PF03459 TOBE domain syc2411_c PF03912 Psb28 protein syc2413_d PF01266 FAD dependent oxidoreductase syc2413_d PF05690 Thiazole biosynthesis protein ThiG syc2419_c PF02669 K+-transporting ATPase, c chain syc2421_c PF03814 Potassium-transporting ATPase A subunit syc2422_c PF02875 Mur ligase family, glutamate ligase domain syc2422_c PF08245 Mur ligase middle domain syc2424_c PF02894 Oxidoreductase family, C-terminal alpha/beta domain syc2424_c PF01408 Oxidoreductase family, NAD-binding Rossmann fold syc2426_d PF09190 DALR domain syc2426_d PF01406 tRNA synthetases class I (C) catalytic domain syc2428_c PF00520 Ion transport protein syc2428_c PF00027 Cyclic nucleotide-binding domain syc2429_c PF00881 Nitroreductase family syc2431_d PF00141 Peroxidase syc2433_d PF00465 Iron-containing alcohol dehydrogenase syc2435_c PF03808 Glycosyl transferase WecB/TagA/CpsF family syc2436_d PF01926 50S ribosome-binding GTPase syc2436_d PF10396 GTP-binding protein TrmE N-terminus syc2436_d PF12631 MnmE helical domain syc2437_c PF00301 Rubredoxin syc2437_c PF01613 Flavin reductase like domain syc2441_c PF00636 Ribonuclease III domain syc2441_c PF00035 Double-stranded RNA binding motif syc2443_c PF00563 EAL domain syc2443_c PF01590 GAF domain syc2443_c PF00990 Diguanylate cyclase, GGDEF domain syc2443_c PF00360 Phytochrome region syc2445_c PF05991 YacP-like NYN domain syc2446_c PF00005 ABC transporter syc2448_d PF00124 Photosynthetic reaction centre protein syc2450_d PF00395 S-layer homology domain syc2450_d PF04966 Carbohydrate-selective porin, OprB family syc2451_d PF00395 S-layer homology domain syc2451_d PF04966 Carbohydrate-selective porin, OprB family syc2452_d PF02082 Transcriptional regulator syc2453_d PF00291 Pyridoxal-phosphate dependent enzyme syc2460_c PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L syc2464_c PF13442 Cytochrome C oxidase, cbb3-type, subunit III syc2465_d PF02529 Cytochrome B6-F complex subunit 5 syc2467_c PF00117 Glutamine amidotransferase class-I syc2470_c PF02875 Mur ligase family, glutamate ligase domain syc2470_c PF01225 Mur ligase family, catalytic domain syc2470_c PF08245 Mur ligase middle domain syc2472_c PF01809 Putative membrane protein insertion efficiency factor syc2473_d PF01479 S4 domain syc2473_d PF00163 Ribosomal protein S4/S9 N-terminal domain syc2475_d PF00528 Binding-protein-dependent transport system inner membrane component syc2476_d PF00005 ABC transporter syc2477_d PF00005 ABC transporter syc2479_d PF03819 MazG nucleotide pyrophosphohydrolase domain syc2482_c PF00696 Amino acid kinase family syc2483_c PF11016 Protein of unknown function (DUF2854) syc2484_c PF00111 2Fe-2S iron-sulfur cluster binding domain syc2486_c PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain syc2486_c PF01842 ACT domain syc2486_c PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain syc2490_c PF00180 Isocitrate/isopropylmalate dehydrogenase syc2492_c PF04055 Radical SAM superfamily syc2495_c PF04542 Sigma-70 region 2 syc2495_c PF04545 Sigma-70, region 4 syc2495_c PF04539 Sigma-70 region 3 syc2497_c PF01593 Flavin containing amine oxidoreductase syc2498_d PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase syc2498_d PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain syc2498_d PF13288 DXP reductoisomerase C-terminal domain syc2499_d PF00849 RNA pseudouridylate synthase syc2501_c PF00300 Histidine phosphatase superfamily (branch 1) syc2502_c PF00512 His Kinase A (phospho-acceptor) domain syc2502_c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase syc2503_d PF00580 UvrD/REP helicase N-terminal domain syc2503_d PF13361 UvrD-like helicase C-terminal domain syc2504_c PF00815 Histidinol dehydrogenase syc2505_d PF01649 Ribosomal protein S20 syc2506_d PF01026 TatD related DNase syc2507_d PF04563 RNA polymerase beta subunit syc2507_d PF04560 RNA polymerase Rpb2, domain 7 syc2507_d PF04565 RNA polymerase Rpb2, domain 3 syc2507_d PF10385 RNA polymerase beta subunit external 1 domain syc2507_d PF00562 RNA polymerase Rpb2, domain 6 syc2507_d PF04561 RNA polymerase Rpb2, domain 2 syc2508_d PF04997 RNA polymerase Rpb1, domain 1 syc2508_d PF00623 RNA polymerase Rpb1, domain 2 syc2508_d PF04983 RNA polymerase Rpb1, domain 3 syc2509_d PF04998 RNA polymerase Rpb1, domain 5 syc2509_d PF05000 RNA polymerase Rpb1, domain 4 syc2509_d PF04983 RNA polymerase Rpb1, domain 3 syc2513_d PF00158 Sigma-54 interaction domain syc2513_d PF01590 GAF domain syc2514_c PF10693 Protein of unknown function (DUF2499) syc2518_d PF00528 Binding-protein-dependent transport system inner membrane component syc2522_d PF00117 Glutamine amidotransferase class-I