syc0005_d SM00955 syc0005_d syc0011_d SM00481 DNA polymerase alpha chain like domain syc0034_c SM00836 DALR anticodon binding domain syc0034_c SM01016 Arginyl tRNA synthetase N terminal dom syc0036_d SM00404 Protein tyrosine phosphatase, catalytic domain motif syc0038_d SM00631 syc0038_d syc0042_c SM00644 syc0042_c syc0043_d SM00387 Histidine kinase-like ATPases syc0043_d SM00388 His Kinase A (phosphoacceptor) domain syc0045_c SM00116 Domain in cystathionine beta-synthase and other proteins. syc0048_c SM00316 Ribosomal protein S1-like RNA-binding domain syc0063_d SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. syc0066_d SM00306 Hint (Hedgehog/Intein) domain N-terminal region syc0069_c SM01002 Alanine dehydrogenase/PNT, C-terminal domain syc0069_c SM01003 Alanine dehydrogenase/PNT, N-terminal domain syc0075_d SM00393 Putative single-stranded nucleic acids-binding domain syc0078_d SM00382 ATPases associated with a variety of cellular activities syc0079_c SM00729 Elongator protein 3, MiaB family, Radical SAM syc0090_d SM00028 Tetratricopeptide repeats syc0100_c SM00563 Phosphate acyltransferases syc0101_c SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. syc0104_c SM00448 cheY-homologous receiver domain syc0104_c SM00862 Transcriptional regulatory protein, C terminal syc0105_d SM00382 ATPases associated with a variety of cellular activities syc0107_c SM00382 ATPases associated with a variety of cellular activities syc0110_c SM00947 Carbonic anhydrase syc0123_c SM00859 Semialdehyde dehydrogenase, NAD binding domain syc0129_c SM00961 Ribulose bisphosphate carboxylase, small chain syc0131_c SM00877 syc0131_c syc0133_c SM00961 Ribulose bisphosphate carboxylase, small chain syc0135_c SM00877 syc0135_c syc0139_c SM00436 Bacterial DNA topoisomeraes I ATP-binding domain syc0139_c SM00437 Bacterial DNA topoisomerase I DNA-binding domain syc0139_c SM00493 syc0139_c syc0141_d SM00382 ATPases associated with a variety of cellular activities syc0145_d SM00917 LeuA allosteric (dimerisation) domain syc0149_d SM00382 ATPases associated with a variety of cellular activities syc0151_d SM00448 cheY-homologous receiver domain syc0151_d SM00862 Transcriptional regulatory protein, C terminal syc0152_d SM00849 Metallo-beta-lactamase superfamily syc0155_d SM00633 Glycosyl hydrolase family 10 syc0161_c SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. syc0164_c SM00382 ATPases associated with a variety of cellular activities syc0167_c SM01057 Eukaryotic-type carbonic anhydrase syc0173_c SM00052 Putative diguanylate phosphodiesterase syc0173_c SM00091 PAS domain syc0173_c SM00267 diguanylate cyclase syc0175_c SM00382 ATPases associated with a variety of cellular activities syc0177_c SM00878 Biotin carboxylase C-terminal domain syc0179_c SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. syc0179_c SM00954 Region found in RelA / SpoT proteins syc0184_c SM01018 B12 binding domain syc0186_c SM00493 syc0186_c syc0197_d SM00091 PAS domain syc0198_d SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc0198_d SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc0198_d SM00091 PAS domain syc0198_d SM00387 Histidine kinase-like ATPases syc0198_d SM00388 His Kinase A (phosphoacceptor) domain syc0199_d SM00448 cheY-homologous receiver domain syc0200_d SM00052 Putative diguanylate phosphodiesterase syc0200_d SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc0200_d SM00091 PAS domain syc0200_d SM00267 diguanylate cyclase syc0200_d SM00448 cheY-homologous receiver domain syc0216_c SM00191 Integrin alpha (beta-propellor repeats). syc0227_c SM00487 DEAD-like helicases superfamily syc0227_c SM00490 helicase superfamily c-terminal domain syc0227_c SM00982 syc0227_c syc0227_c SM01058 CarD-like/TRCF domain syc0228_c SM00382 ATPases associated with a variety of cellular activities syc0229_d SM00487 DEAD-like helicases superfamily syc0229_d SM00490 helicase superfamily c-terminal domain syc0229_d SM01142 syc0229_d syc0230_c SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain syc0230_c SM01232 syc0230_c syc0233_d SM00880 syc0233_d syc0236_c SM00382 ATPases associated with a variety of cellular activities syc0239_d SM00382 ATPases associated with a variety of cellular activities syc0241_d SM00382 ATPases associated with a variety of cellular activities syc0248_d SM00382 ATPases associated with a variety of cellular activities syc0252_c SM00487 DEAD-like helicases superfamily syc0252_c SM00490 helicase superfamily c-terminal domain syc0255_c SM00267 diguanylate cyclase syc0256_c SM00919 Malic enzyme, NAD binding domain syc0256_c SM01274 syc0256_c syc0258_d SM00563 Phosphate acyltransferases syc0259_c SM00220 Serine/Threonine protein kinases, catalytic domain syc0260_d SM00873 B3/4 domain syc0260_d SM00874 tRNA synthetase B5 domain syc0260_d SM00896 Ferredoxin-fold anticodon binding domain syc0261_d SM00400 zinc finger syc0261_d SM00493 syc0261_d syc0262_c SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor syc0267_c SM00852 Probable molybdopterin binding domain syc0268_d SM00852 Probable molybdopterin binding domain syc0271_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc0276_d SM00062 Bacterial periplasmic substrate-binding proteins syc0278_d SM00028 Tetratricopeptide repeats syc0282_c SM00116 Domain in cystathionine beta-synthase and other proteins. syc0282_c SM00924 MgtE intracellular N domain syc0297_c SM00100 Cyclic nucleotide-monophosphate binding domain syc0306_c SM00382 ATPases associated with a variety of cellular activities syc0307_d SM00100 Cyclic nucleotide-monophosphate binding domain syc0313_d SM00382 ATPases associated with a variety of cellular activities syc0314_d SM00382 ATPases associated with a variety of cellular activities syc0315_d SM00926 Molybdopterin oxidoreductase Fe4S4 domain syc0323_d SM00278 Helix-hairpin-helix DNA-binding motif class 1 syc0329_d SM00448 cheY-homologous receiver domain syc0332_d SM01247 syc0332_d syc0333_d SM01248 syc0333_d syc0351_d SM00967 RNA 2'-O ribose methyltransferase substrate binding syc0357_d SM00563 Phosphate acyltransferases syc0359_c SM00072 Guanylate kinase homologues. syc0382_d SM01001 AIR carboxylase syc0384_c SM00857 Resolvase, N terminal domain syc0391_d SM00347 helix_turn_helix multiple antibiotic resistance protein syc0392_d SM00052 Putative diguanylate phosphodiesterase syc0392_d SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc0392_d SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc0392_d SM00091 PAS domain syc0392_d SM00267 diguanylate cyclase syc0402_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc0402_c SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. syc0414_c SM00567 E-Z type HEAT repeats syc0416_d SM00382 ATPases associated with a variety of cellular activities syc0419_c SM00331 Sigma factor PP2C-like phosphatases syc0419_c SM00332 Serine/threonine phosphatases, family 2C, catalytic domain syc0424_c SM00073 Histidine Phosphotransfer domain syc0425_c SM00955 syc0425_c syc0437_d SM00363 S4 RNA-binding domain syc0438_d SM00220 Serine/Threonine protein kinases, catalytic domain syc0439_c SM00448 cheY-homologous receiver domain syc0441_c SM00411 bacterial (prokaryotic) histone like domain syc0442_d SM00028 Tetratricopeptide repeats syc0448_c SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. syc0449_d SM00382 ATPases associated with a variety of cellular activities syc0449_d SM00760 Bacterial dnaA protein helix-turn-helix domain syc0460_c SM00382 ATPases associated with a variety of cellular activities syc0460_c SM01086 C-terminal, D2-small domain, of ClpB protein syc0464_c SM00642 Alpha-amylase domain syc0467_c SM00831 Cation transporter/ATPase, N-terminus syc0470_c SM00487 DEAD-like helicases superfamily syc0470_c SM00490 helicase superfamily c-terminal domain syc0483_c SM00487 DEAD-like helicases superfamily syc0492_c SM00530 Helix-turn-helix XRE-family like proteins syc0493_c SM00567 E-Z type HEAT repeats syc0494_c SM00567 E-Z type HEAT repeats syc0497_c SM01094 CpcD/allophycocyanin linker domain syc0498_c SM01094 CpcD/allophycocyanin linker domain syc0499_c SM01094 CpcD/allophycocyanin linker domain syc0513_c SM00460 Transglutaminase/protease-like homologues syc0521_c SM00028 Tetratricopeptide repeats syc0526_c SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain syc0530_d SM00260 Two component signalling adaptor domain syc0531_d SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). syc0531_d SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain syc0532_d SM00073 Histidine Phosphotransfer domain syc0532_d SM00260 Two component signalling adaptor domain syc0532_d SM00387 Histidine kinase-like ATPases syc0532_d SM00448 cheY-homologous receiver domain syc0532_d SM01231 syc0532_d syc0533_d SM00448 cheY-homologous receiver domain syc0533_d SM00862 Transcriptional regulatory protein, C terminal syc0534_d SM00091 PAS domain syc0534_d SM00387 Histidine kinase-like ATPases syc0534_d SM00388 His Kinase A (phosphoacceptor) domain syc0535_d SM00363 S4 RNA-binding domain syc0539_c SM00028 Tetratricopeptide repeats syc0546_c SM00382 ATPases associated with a variety of cellular activities syc0561_c SM01133 syc0561_c syc0566_c SM01094 CpcD/allophycocyanin linker domain syc0568_c SM00116 Domain in cystathionine beta-synthase and other proteins. syc0570_d SM00984 UDP binding domain syc0572_d SM00959 Rho termination factor, N-terminal domain syc0582_c SM00382 ATPases associated with a variety of cellular activities syc0586_c SM00833 Cobalamin synthesis protein cobW C-terminal domain syc0595_d SM00382 ATPases associated with a variety of cellular activities syc0600_d SM00382 ATPases associated with a variety of cellular activities syc0601_d SM00382 ATPases associated with a variety of cellular activities syc0602_d SM00530 Helix-turn-helix XRE-family like proteins syc0604_c SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor syc0605_d SM00849 Metallo-beta-lactamase superfamily syc0606_d SM00450 Rhodanese Homology Domain syc0617_d SM01209 syc0617_d syc0617_d SM01210 syc0617_d syc0618_d SM00091 PAS domain syc0618_d SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain syc0618_d SM00387 Histidine kinase-like ATPases syc0618_d SM00388 His Kinase A (phosphoacceptor) domain syc0625_d SM00930 syc0625_d syc0630_c SM00382 ATPases associated with a variety of cellular activities syc0648_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc0655_d SM00838 Elongation factor G C-terminus syc0655_d SM00889 Elongation factor G, domain IV syc0657_d SM01403 syc0657_d syc0658_d SM00464 Found in ATP-dependent protease La (LON) syc0662_c SM00316 Ribosomal protein S1-like RNA-binding domain syc0663_c SM00729 Elongator protein 3, MiaB family, Radical SAM syc0664_c SM00863 Threonyl and Alanyl tRNA synthetase second additional domain syc0666_d SM00487 DEAD-like helicases superfamily syc0666_d SM00490 helicase superfamily c-terminal domain syc0680_c SM00260 Two component signalling adaptor domain syc0681_c SM00073 Histidine Phosphotransfer domain syc0681_c SM00260 Two component signalling adaptor domain syc0681_c SM00387 Histidine kinase-like ATPases syc0681_c SM00448 cheY-homologous receiver domain syc0681_c SM01231 syc0681_c syc0682_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc0682_c SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). syc0682_c SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain syc0683_c SM00260 Two component signalling adaptor domain syc0684_c SM00448 cheY-homologous receiver domain syc0685_c SM00448 cheY-homologous receiver domain syc0692_d SM00382 ATPases associated with a variety of cellular activities syc0693_d SM00382 ATPases associated with a variety of cellular activities syc0702_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc0705_c SM00382 ATPases associated with a variety of cellular activities syc0709_d SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. syc0712_d SM00833 Cobalamin synthesis protein cobW C-terminal domain syc0720_c SM01211 syc0720_c syc0723_d SM00052 Putative diguanylate phosphodiesterase syc0723_d SM00267 diguanylate cyclase syc0724_c SM00382 ATPases associated with a variety of cellular activities syc0727_c SM00028 Tetratricopeptide repeats syc0727_c SM00271 DnaJ molecular chaperone homology domain syc0739_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc0747_d SM00360 RNA recognition motif syc0755_d SM00382 ATPases associated with a variety of cellular activities syc0757_d SM00220 Serine/Threonine protein kinases, catalytic domain syc0758_c SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. syc0771_d SM00530 Helix-turn-helix XRE-family like proteins syc0772_d SM00530 Helix-turn-helix XRE-family like proteins syc0804_c SM00778 Zinc-binding domain of primase-helicase syc0805_c SM00990 syc0805_c syc0806_c SM00487 DEAD-like helicases superfamily syc0806_c SM00490 helicase superfamily c-terminal domain syc0816_d SM00287 Bacterial SH3 domain homologues syc0816_d SM00646 syc0816_d syc0818_d SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. syc0818_d SM00245 tail specific protease syc0819_c SM00851 MGS-like domain syc0819_c SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain syc0836_d SM00316 Ribosomal protein S1-like RNA-binding domain syc0841_c SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor syc0845_c SM00822 syc0845_c syc0850_c SM00360 RNA recognition motif syc0851_c SM00474 3'-5' exonuclease syc0856_c SM00478 endonuclease III syc0856_c SM00525 syc0856_c syc0862_c SM00271 DnaJ molecular chaperone homology domain syc0864_c SM00100 Cyclic nucleotide-monophosphate binding domain syc0865_c SM00044 Adenylyl- / guanylyl cyclase, catalytic domain syc0865_c SM01080 syc0865_c syc0877_c SM00487 DEAD-like helicases superfamily syc0877_c SM00490 helicase superfamily c-terminal domain syc0882_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc0882_c SM00387 Histidine kinase-like ATPases syc0882_c SM00388 His Kinase A (phosphoacceptor) domain syc0882_c SM00448 cheY-homologous receiver domain syc0885_c SM00382 ATPases associated with a variety of cellular activities syc0886_c SM01192 syc0886_c syc0886_c SM01193 syc0886_c syc0888_d SM00382 ATPases associated with a variety of cellular activities syc0888_d SM01086 C-terminal, D2-small domain, of ClpB protein syc0890_d SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. syc0890_d SM00739 KOW (Kyprides, Ouzounis, Woese) motif. syc0891_d SM00649 Ribosomal protein L11/L12 syc0899_c SM00382 ATPases associated with a variety of cellular activities syc0899_c SM00393 Putative single-stranded nucleic acids-binding domain syc0902_c SM00382 ATPases associated with a variety of cellular activities syc0906_c SM00996 S-adenosyl-L-homocysteine hydrolase syc0906_c SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain syc0909_c SM00450 Rhodanese Homology Domain syc0911_d SM00855 Phosphoglycerate mutase family syc0913_c SM00463 Small MutS-related domain syc0913_c SM00533 DNA-binding domain of DNA mismatch repair MUTS family syc0913_c SM00534 ATPase domain of DNA mismatch repair MUTS family syc0923_d SM00220 Serine/Threonine protein kinases, catalytic domain syc0925_c SM00257 Lysin motif syc0929_d SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain syc0938_d SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. syc0940_c SM00382 ATPases associated with a variety of cellular activities syc0957_c SM00240 Forkhead associated domain syc0958_c SM00382 ATPases associated with a variety of cellular activities syc0959_d SM00487 DEAD-like helicases superfamily syc0959_d SM00490 helicase superfamily c-terminal domain syc0962_d SM00382 ATPases associated with a variety of cellular activities syc0965_d SM00448 cheY-homologous receiver domain syc0965_d SM00862 Transcriptional regulatory protein, C terminal syc0979_c SM00729 Elongator protein 3, MiaB family, Radical SAM syc0983_c SM00861 Transketolase, pyrimidine binding domain syc0984_c SM00825 Beta-ketoacyl synthase syc0985_c SM00823 Phosphopantetheine attachment site syc0990_c SM00028 Tetratricopeptide repeats syc1000_c SM00877 syc1000_c syc1004_d SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. syc1004_d SM00245 tail specific protease syc1007_d SM00382 ATPases associated with a variety of cellular activities syc1028_d SM00904 Riboflavin kinase syc1029_c SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc1029_c SM00091 PAS domain syc1029_c SM00267 diguanylate cyclase syc1034_c SM00855 Phosphoglycerate mutase family syc1039_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1039_c SM00387 Histidine kinase-like ATPases syc1039_c SM00388 His Kinase A (phosphoacceptor) domain syc1040_d SM00838 Elongation factor G C-terminus syc1051_d SM00235 Zinc-dependent metalloprotease syc1055_d SM00226 Low molecular weight phosphatase family syc1065_c SM00387 Histidine kinase-like ATPases syc1065_c SM00388 His Kinase A (phosphoacceptor) domain syc1071_d SM00478 endonuclease III syc1071_d SM00525 syc1071_d syc1077_c SM01001 AIR carboxylase syc1087_c SM00861 Transketolase, pyrimidine binding domain syc1089_d SM00917 LeuA allosteric (dimerisation) domain syc1090_d SM00382 ATPases associated with a variety of cellular activities syc1098_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc1098_d SM00876 Biotin and Thiamin Synthesis associated domain syc1100_c SM00382 ATPases associated with a variety of cellular activities syc1112_d SM00937 syc1112_d syc1119_c SM00798 AICARFT/IMPCHase bienzyme syc1119_c SM00851 MGS-like domain syc1123_d SM00925 MltA specific insert domain syc1152_c SM01093 syc1152_c syc1153_d SM00897 FIST N domain syc1153_d SM01204 syc1153_d syc1163_c SM00382 ATPases associated with a variety of cellular activities syc1165_d SM00382 ATPases associated with a variety of cellular activities syc1188_d SM01094 CpcD/allophycocyanin linker domain syc1192_d SM00938 Nitrogen regulatory protein P-II syc1194_c SM00363 S4 RNA-binding domain syc1198_d SM00998 Adenylosuccinate lyase C-terminus syc1202_d SM00650 Ribosomal RNA adenine dimethylases syc1210_d SM00155 Phospholipase D. Active site motifs. syc1215_c SM00382 ATPases associated with a variety of cellular activities syc1223_c SM00957 SecA DEAD-like domain syc1223_c SM00958 SecA preprotein cross-linking domain syc1227_c SM00877 syc1227_c syc1228_c SM00877 syc1228_c syc1233_d SM00852 Probable molybdopterin binding domain syc1234_c SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region syc1236_d SM00278 Helix-hairpin-helix DNA-binding motif class 1 syc1236_d SM00292 breast cancer carboxy-terminal domain syc1236_d SM00532 Ligase N family syc1243_c SM00028 Tetratricopeptide repeats syc1247_d SM00271 DnaJ molecular chaperone homology domain syc1253_d SM00382 ATPases associated with a variety of cellular activities syc1253_d SM01086 C-terminal, D2-small domain, of ClpB protein syc1259_c SM00434 DNA Topoisomerase IV syc1261_d SM01093 syc1261_d syc1262_c SM00479 syc1262_c syc1264_c SM00382 ATPases associated with a variety of cellular activities syc1267_c SM00062 Bacterial periplasmic substrate-binding proteins syc1268_d SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain syc1277_c SM00100 Cyclic nucleotide-monophosphate binding domain syc1278_c SM00100 Cyclic nucleotide-monophosphate binding domain syc1296_d SM00829 Enoylreductase syc1304_c SM00028 Tetratricopeptide repeats syc1317_d SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs syc1317_d SM00474 3'-5' exonuclease syc1317_d SM00475 5'-3' exonuclease syc1317_d SM00482 DNA polymerase A domain syc1323_c SM00052 Putative diguanylate phosphodiesterase syc1323_c SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc1323_c SM00091 PAS domain syc1323_c SM00267 diguanylate cyclase syc1329_d SM00382 ATPases associated with a variety of cellular activities syc1332_d SM00382 ATPases associated with a variety of cellular activities syc1338_c SM01230 syc1338_c syc1347_d SM00232 JAB/MPN domain syc1348_d SM00450 Rhodanese Homology Domain syc1354_c SM00267 diguanylate cyclase syc1354_c SM00448 cheY-homologous receiver domain syc1362_d SM00861 Transketolase, pyrimidine binding domain syc1374_d SM00100 Cyclic nucleotide-monophosphate binding domain syc1375_c SM00732 Likely ribonuclease with RNase H fold. syc1377_c SM00100 Cyclic nucleotide-monophosphate binding domain syc1377_c SM00419 helix_turn_helix, cAMP Regulatory protein syc1381_d SM00052 Putative diguanylate phosphodiesterase syc1386_c SM00845 GatB domain syc1394_c SM00530 Helix-turn-helix XRE-family like proteins syc1396_c SM00470 ParB-like nuclease domain syc1401_d SM00248 ankyrin repeats syc1409_d SM00448 cheY-homologous receiver domain syc1409_d SM00862 Transcriptional regulatory protein, C terminal syc1414_c SM00345 helix_turn_helix gluconate operon transcriptional repressor syc1416_c SM00849 Metallo-beta-lactamase superfamily syc1418_d SM00642 Alpha-amylase domain syc1422_c SM00382 ATPases associated with a variety of cellular activities syc1423_d SM00363 S4 RNA-binding domain syc1427_c SM00530 Helix-turn-helix XRE-family like proteins syc1428_c SM00062 Bacterial periplasmic substrate-binding proteins syc1428_c SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. syc1429_c SM01011 Aminopeptidase P, N-terminal domain syc1435_d SM00382 ATPases associated with a variety of cellular activities syc1439_d SM00195 Dual specificity phosphatase, catalytic domain syc1448_d SM00028 Tetratricopeptide repeats syc1452_c SM00028 Tetratricopeptide repeats syc1454_c SM00028 Tetratricopeptide repeats syc1459_c SM00905 Dihydroneopterin aldolase syc1460_c SM01350 syc1460_c syc1482_d SM00702 Prolyl 4-hydroxylase alpha subunit homologues. syc1496_c SM00480 DNA polymerase III beta subunit syc1504_d SM00863 Threonyl and Alanyl tRNA synthetase second additional domain syc1513_c SM01118 syc1513_c syc1515_c SM01091 Transporter associated domain syc1531_d SM00271 DnaJ molecular chaperone homology domain syc1536_d SM00382 ATPases associated with a variety of cellular activities syc1541_d SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family syc1545_d SM00841 Elongation factor P, C-terminal syc1545_d SM01185 syc1545_d syc1553_d SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region syc1567_d SM00986 Uracil DNA glycosylase superfamily syc1567_d SM00987 UreE urease accessory protein, C-terminal domain syc1574_d SM00028 Tetratricopeptide repeats syc1574_d SM00271 DnaJ molecular chaperone homology domain syc1575_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1575_c SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc1575_c SM00091 PAS domain syc1575_c SM00267 diguanylate cyclase syc1576_d SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1576_d SM00267 diguanylate cyclase syc1583_c SM00382 ATPases associated with a variety of cellular activities syc1583_c SM00994 ClpX C4-type zinc finger syc1583_c SM01086 C-terminal, D2-small domain, of ClpB protein syc1586_d SM00670 Large family of predicted nucleotide-binding domains syc1588_d SM00052 Putative diguanylate phosphodiesterase syc1588_d SM00267 diguanylate cyclase syc1594_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc1607_d SM00244 prohibitin homologues syc1608_d SM00244 prohibitin homologues syc1609_d SM00562 syc1609_d syc1613_d SM00382 ATPases associated with a variety of cellular activities syc1614_d SM00382 ATPases associated with a variety of cellular activities syc1615_c SM00387 Histidine kinase-like ATPases syc1615_c SM00433 TopoisomeraseII syc1624_d SM00702 Prolyl 4-hydroxylase alpha subunit homologues. syc1631_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1631_c SM00331 Sigma factor PP2C-like phosphatases syc1632_c SM00382 ATPases associated with a variety of cellular activities syc1632_c SM00962 SRP54-type protein, GTPase domain syc1632_c SM00963 SRP54-type protein, helical bundle domain syc1638_c SM00448 cheY-homologous receiver domain syc1638_c SM00862 Transcriptional regulatory protein, C terminal syc1665_d SM00382 ATPases associated with a variety of cellular activities syc1666_d SM00316 Ribosomal protein S1-like RNA-binding domain syc1666_d SM00322 K homology RNA-binding domain syc1679_c SM00450 Rhodanese Homology Domain syc1683_d SM01228 syc1683_d syc1690_d SM00448 cheY-homologous receiver domain syc1690_d SM00862 Transcriptional regulatory protein, C terminal syc1693_d SM00244 prohibitin homologues syc1696_d SM00788 Adenylosuccinate synthetase syc1707_d SM00732 Likely ribonuclease with RNase H fold. syc1716_d SM00271 DnaJ molecular chaperone homology domain syc1717_d SM00835 Cupin syc1721_c SM00890 Domain of unknown function syc1722_c SM00670 Large family of predicted nucleotide-binding domains syc1723_d SM00729 Elongator protein 3, MiaB family, Radical SAM syc1727_c SM00864 Tubulin/FtsZ family, GTPase domain syc1727_c SM00865 Tubulin/FtsZ family, C-terminal domain syc1731_c SM00729 Elongator protein 3, MiaB family, Radical SAM syc1732_d SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain syc1743_c SM00646 syc1743_c syc1747_d SM00419 helix_turn_helix, cAMP Regulatory protein syc1754_c SM00382 ATPases associated with a variety of cellular activities syc1763_c SM00382 ATPases associated with a variety of cellular activities syc1766_d SM00644 syc1766_d syc1772_d SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. syc1772_d SM00245 tail specific protease syc1773_d SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. syc1774_c SM00028 Tetratricopeptide repeats syc1777_d SM00567 E-Z type HEAT repeats syc1781_c SM00028 Tetratricopeptide repeats syc1783_c SM00530 Helix-turn-helix XRE-family like proteins syc1787_c SM00382 ATPases associated with a variety of cellular activities syc1788_d SM00883 Chaperonin 10 Kd subunit syc1796_c SM00448 cheY-homologous receiver domain syc1796_c SM00862 Transcriptional regulatory protein, C terminal syc1801_c SM01387 syc1801_c syc1802_c SM00278 Helix-hairpin-helix DNA-binding motif class 1 syc1804_d SM01230 syc1804_d syc1809_d SM00116 Domain in cystathionine beta-synthase and other proteins. syc1818_d SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1818_d SM00387 Histidine kinase-like ATPases syc1818_d SM00388 His Kinase A (phosphoacceptor) domain syc1820_d SM00028 Tetratricopeptide repeats syc1825_c SM00327 von Willebrand factor (vWF) type A domain syc1825_c SM00382 ATPases associated with a variety of cellular activities syc1834_d SM00421 helix_turn_helix, Lux Regulon syc1850_d SM00411 bacterial (prokaryotic) histone like domain syc1851_c SM00533 DNA-binding domain of DNA mismatch repair MUTS family syc1851_c SM00534 ATPase domain of DNA mismatch repair MUTS family syc1856_d SM00388 His Kinase A (phosphoacceptor) domain syc1862_d SM00382 ATPases associated with a variety of cellular activities syc1868_d SM01382 syc1868_d syc1868_d SM01383 syc1868_d syc1871_d SM00322 K homology RNA-binding domain syc1875_d SM01374 syc1875_d syc1876_d SM00739 KOW (Kyprides, Ouzounis, Woese) motif. syc1888_d SM00662 RNA polymerases D syc1894_d SM00937 syc1894_d syc1895_c SM00507 HNH nucleases syc1896_d SM01005 Alanine racemase, C-terminal domain syc1898_d SM00306 Hint (Hedgehog/Intein) domain N-terminal region syc1898_d SM00481 DNA polymerase alpha chain like domain syc1899_c SM00933 syc1899_c syc1900_c SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase syc1902_d SM00044 Adenylyl- / guanylyl cyclase, catalytic domain syc1902_d SM01080 syc1902_d syc1904_d SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1904_d SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. syc1905_c SM00267 diguanylate cyclase syc1916_d SM00046 Diacylglycerol kinase catalytic domain (presumed) syc1921_c SM00419 helix_turn_helix, cAMP Regulatory protein syc1938_d SM01230 syc1938_d syc1944_c SM00382 ATPases associated with a variety of cellular activities syc1947_d SM00318 Staphylococcal nuclease homologues syc1958_d SM00646 syc1958_d syc1963_c SM00930 syc1963_c syc1970_d SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain syc1973_d SM00967 RNA 2'-O ribose methyltransferase substrate binding syc1978_c SM00387 Histidine kinase-like ATPases syc1978_c SM00388 His Kinase A (phosphoacceptor) domain syc1978_c SM01248 syc1978_c syc1979_c SM01400 syc1979_c syc1983_c SM00382 ATPases associated with a variety of cellular activities syc1988_d SM00382 ATPases associated with a variety of cellular activities syc1989_d SM01116 syc1989_d syc1997_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc1997_c SM00116 Domain in cystathionine beta-synthase and other proteins. syc1997_c SM00267 diguanylate cyclase syc1999_c SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. syc2004_d SM00756 syc2004_d syc2011_d SM00838 Elongation factor G C-terminus syc2011_d SM00889 Elongation factor G, domain IV syc2015_d SM00855 Phosphoglycerate mutase family syc2019_c SM00271 DnaJ molecular chaperone homology domain syc2022_d SM00382 ATPases associated with a variety of cellular activities syc2023_d SM00382 ATPases associated with a variety of cellular activities syc2036_c SM01207 syc2036_c syc2048_d SM00968 SMC proteins Flexible Hinge Domain syc2056_d SM00530 Helix-turn-helix XRE-family like proteins syc2073_d SM00322 K homology RNA-binding domain syc2084_d SM00849 Metallo-beta-lactamase superfamily syc2087_c SM00903 Flavin reductase like domain syc2092_c SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. syc2096_d SM00240 Forkhead associated domain syc2097_d SM00360 RNA recognition motif syc2098_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc2103_c SM01007 Class II Aldolase and Adducin N-terminal domain syc2124_d SM00028 Tetratricopeptide repeats syc2138_d SM00100 Cyclic nucleotide-monophosphate binding domain syc2149_d SM00465 GIY-YIG type nucleases (URI domain) syc2155_c SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain syc2175_d SM00530 Helix-turn-helix XRE-family like proteins syc2184_d SM00316 Ribosomal protein S1-like RNA-binding domain syc2184_d SM00357 Cold shock protein domain syc2184_d SM00955 syc2184_d syc2190_d SM00100 Cyclic nucleotide-monophosphate binding domain syc2190_d SM00382 ATPases associated with a variety of cellular activities syc2202_d SM00382 ATPases associated with a variety of cellular activities syc2203_c SM00450 Rhodanese Homology Domain syc2217_d SM00460 Transglutaminase/protease-like homologues syc2221_c SM00448 cheY-homologous receiver domain syc2221_c SM00862 Transcriptional regulatory protein, C terminal syc2222_c SM00387 Histidine kinase-like ATPases syc2222_c SM00388 His Kinase A (phosphoacceptor) domain syc2234_d SM00421 helix_turn_helix, Lux Regulon syc2234_d SM00448 cheY-homologous receiver domain syc2235_c SM00052 Putative diguanylate phosphodiesterase syc2235_c SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc2235_c SM00091 PAS domain syc2235_c SM00267 diguanylate cyclase syc2246_d SM00859 Semialdehyde dehydrogenase, NAD binding domain syc2247_d SM01130 syc2247_d syc2248_d SM00849 Metallo-beta-lactamase superfamily syc2263_d SM01240 syc2263_d syc2270_d SM00116 Domain in cystathionine beta-synthase and other proteins. syc2271_d SM00567 E-Z type HEAT repeats syc2277_d SM00448 cheY-homologous receiver domain syc2278_d SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain syc2278_d SM00387 Histidine kinase-like ATPases syc2278_d SM00388 His Kinase A (phosphoacceptor) domain syc2278_d SM00448 cheY-homologous receiver domain syc2279_d SM00388 His Kinase A (phosphoacceptor) domain syc2279_d SM00448 cheY-homologous receiver domain syc2280_d SM00100 Cyclic nucleotide-monophosphate binding domain syc2281_d SM00387 Histidine kinase-like ATPases syc2282_c SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc2282_c SM00091 PAS domain syc2282_c SM00267 diguanylate cyclase syc2283_c SM00849 Metallo-beta-lactamase superfamily syc2283_c SM00903 Flavin reductase like domain syc2284_c SM00849 Metallo-beta-lactamase superfamily syc2284_c SM00903 Flavin reductase like domain syc2301_c SM01004 Delta-aminolevulinic acid dehydratase syc2304_c SM00271 DnaJ molecular chaperone homology domain syc2313_c SM00853 MutL C terminal dimerisation domain syc2313_c SM01340 syc2313_c syc2321_c SM00382 ATPases associated with a variety of cellular activities syc2321_c SM00962 SRP54-type protein, GTPase domain syc2321_c SM00963 SRP54-type protein, helical bundle domain syc2332_c SM01002 Alanine dehydrogenase/PNT, C-terminal domain syc2332_c SM01003 Alanine dehydrogenase/PNT, N-terminal domain syc2339_d SM00185 Armadillo/beta-catenin-like repeats syc2339_d SM00567 E-Z type HEAT repeats syc2349_c SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain syc2355_c SM00382 ATPases associated with a variety of cellular activities syc2366_c SM00345 helix_turn_helix gluconate operon transcriptional repressor syc2370_d SM00567 E-Z type HEAT repeats syc2372_d SM01329 syc2372_d syc2375_d SM00052 Putative diguanylate phosphodiesterase syc2375_d SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) syc2375_d SM00091 PAS domain syc2375_d SM00267 diguanylate cyclase syc2388_d SM00872 Alpha mannosidase, middle domain syc2393_d SM00704 CDGSH-type zinc finger. Function unknown. syc2396_c SM00434 DNA Topoisomerase IV syc2397_d SM00448 cheY-homologous receiver domain syc2401_c SM00450 Rhodanese Homology Domain syc2406_c SM00419 helix_turn_helix, cAMP Regulatory protein syc2407_c SM00930 syc2407_c syc2410_d SM00382 ATPases associated with a variety of cellular activities syc2426_d SM00840 syc2426_d syc2434_c SM00729 Elongator protein 3, MiaB family, Radical SAM syc2441_c SM00358 Double-stranded RNA binding motif syc2441_c SM00535 Ribonuclease III family syc2443_c SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. syc2443_c SM00267 diguanylate cyclase syc2446_c SM00382 ATPases associated with a variety of cellular activities syc2472_c SM01234 syc2472_c syc2473_d SM00363 S4 RNA-binding domain syc2473_d SM01390 syc2473_d syc2476_d SM00382 ATPases associated with a variety of cellular activities syc2477_d SM00382 ATPases associated with a variety of cellular activities syc2488_d SM00363 S4 RNA-binding domain syc2490_c SM01329 syc2490_c syc2492_c SM00729 Elongator protein 3, MiaB family, Radical SAM syc2500_d SM00331 Sigma factor PP2C-like phosphatases syc2500_d SM00332 Serine/threonine phosphatases, family 2C, catalytic domain syc2501_c SM00855 Phosphoglycerate mutase family syc2502_c SM00388 His Kinase A (phosphoacceptor) domain syc2508_d SM00663 RNA polymerase I subunit A N-terminus syc2520_d SM00950 syc2520_d