locus-tag class description CYB_0001 PF00308 Bacterial dnaA protein CYB_0001 PF08299 Bacterial dnaA protein helix-turn-helix CYB_0001 PF11638 DnaA N-terminal domain CYB_0003 PF01209 ubiE/COQ5 methyltransferase family CYB_0004 PF00004 ATPase family associated with various cellular activities (AAA) CYB_0004 PF17862 AAA+ lid domain CYB_0004 PF06480 FtsH Extracellular CYB_0004 PF01434 Peptidase family M41 CYB_0005 PF00106 short chain dehydrogenase CYB_0008 PF00521 DNA gyrase/topoisomerase IV, subunit A CYB_0008 PF03989 DNA gyrase C-terminal domain, beta-propeller CYB_0009 PF16326 ABC transporter C-terminal domain CYB_0009 PF12848 ABC transporter CYB_0009 PF00005 ABC transporter CYB_0021 PF00223 Photosystem I psaA/psaB protein CYB_0022 PF00223 Photosystem I psaA/psaB protein CYB_0023 PF00449 Urease alpha-subunit, N-terminal domain CYB_0023 PF01979 Amidohydrolase family CYB_0024 PF08402 TOBE domain CYB_0024 PF00005 ABC transporter CYB_0027 PF13416 Bacterial extracellular solute-binding protein CYB_0028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_0028 PF00512 His Kinase A (phospho-acceptor) domain CYB_0028 PF00989 PAS fold CYB_0028 PF16736 Single Cache-like CYB_0029 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0034 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYB_0034 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYB_0036 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0037 PF00005 ABC transporter CYB_0038 PF00005 ABC transporter CYB_0040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYB_0040 PF01568 Molydopterin dinucleotide binding domain CYB_0040 PF00384 Molybdopterin oxidoreductase CYB_0043 PF02844 Phosphoribosylglycinamide synthetase, N domain CYB_0043 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CYB_0043 PF02843 Phosphoribosylglycinamide synthetase, C domain CYB_0045 PF01966 HD domain CYB_0047 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CYB_0047 PF17770 Ribonuclease J C-terminal domain CYB_0047 PF00753 Metallo-beta-lactamase superfamily CYB_0048 PF00701 Dihydrodipicolinate synthetase family CYB_0049 PF00881 Nitroreductase family CYB_0050 PF02885 Glycosyl transferase family, helical bundle domain CYB_0050 PF00591 Glycosyl transferase family, a/b domain CYB_0051 PF01134 Glucose inhibited division protein A CYB_0053 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_0055 PF04025 Domain of unknown function (DUF370) CYB_0056 PF00625 Guanylate kinase CYB_0057 PF02675 S-adenosylmethionine decarboxylase CYB_0058 PF17284 Spermidine synthase tetramerisation domain CYB_0059 PF00850 Histone deacetylase domain CYB_0064 PF00679 Elongation factor G C-terminus CYB_0064 PF00009 Elongation factor Tu GTP binding domain CYB_0064 PF03144 Elongation factor Tu domain 2 CYB_0064 PF06421 GTP-binding protein LepA C-terminus CYB_0068 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYB_0068 PF01926 50S ribosome-binding GTPase CYB_0071 PF00155 Aminotransferase class I and II CYB_0078 PF00849 RNA pseudouridylate synthase CYB_0079 PF00709 Adenylosuccinate synthetase CYB_0082 PF05697 Bacterial trigger factor protein (TF) CYB_0082 PF05698 Bacterial trigger factor protein (TF) C-terminus CYB_0082 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYB_0084 PF01578 Cytochrome C assembly protein CYB_0088 PF02601 Exonuclease VII, large subunit CYB_0088 PF13742 OB-fold nucleic acid binding domain CYB_0089 PF02609 Exonuclease VII small subunit CYB_0090 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CYB_0090 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CYB_0095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYB_0096 PF01551 Peptidase family M23 CYB_0096 PF01464 Transglycosylase SLT domain CYB_0096 PF10145 Phage-related minor tail protein CYB_0097 PF00300 Histidine phosphatase superfamily (branch 1) CYB_0100 PF01556 DnaJ C terminal domain CYB_0100 PF00226 DnaJ domain CYB_0100 PF00684 DnaJ central domain CYB_0103 PF01241 Photosystem I psaG / psaK CYB_0107 PF17863 AAA lid domain CYB_0107 PF01078 Magnesium chelatase, subunit ChlI CYB_0109 PF00565 Staphylococcal nuclease homologue CYB_0112 PF12146 Serine aminopeptidase, S33 CYB_0113 PF00578 AhpC/TSA family CYB_0113 PF10417 C-terminal domain of 1-Cys peroxiredoxin CYB_0115 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CYB_0115 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYB_0115 PF00361 Proton-conducting membrane transporter CYB_0117 PF00436 Single-strand binding protein family CYB_0118 PF02571 Precorrin-6x reductase CbiJ/CobK CYB_0121 PF04551 GcpE protein CYB_0124 PF01243 Pyridoxamine 5'-phosphate oxidase CYB_0124 PF10615 Protein of unknown function (DUF2470) CYB_0125 PF00462 Glutaredoxin CYB_0126 PF01612 3'-5' exonuclease CYB_0126 PF00476 DNA polymerase family A CYB_0126 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CYB_0126 PF01367 5'-3' exonuclease, C-terminal SAM fold CYB_0127 PF01522 Polysaccharide deacetylase CYB_0130 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0131 PF00149 Calcineurin-like phosphoesterase CYB_0132 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0136 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) CYB_0141 PF03109 ABC1 family CYB_0143 PF02657 Fe-S metabolism associated domain CYB_0144 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CYB_0144 PF01297 Zinc-uptake complex component A periplasmic CYB_0145 PF00005 ABC transporter CYB_0147 PF00950 ABC 3 transport family CYB_0148 PF01783 Ribosomal L32p protein family CYB_0149 PF00684 DnaJ central domain CYB_0149 PF01556 DnaJ C terminal domain CYB_0149 PF00226 DnaJ domain CYB_0151 PF00753 Metallo-beta-lactamase superfamily CYB_0151 PF16123 Hydroxyacylglutathione hydrolase C-terminus CYB_0152 PF07690 Major Facilitator Superfamily CYB_0154 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CYB_0157 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CYB_0157 PF01502 Phosphoribosyl-AMP cyclohydrolase CYB_0159 PF00005 ABC transporter CYB_0161 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0164 PF05861 Bacterial phosphonate metabolism protein (PhnI) CYB_0165 PF06007 Phosphonate metabolism protein PhnJ CYB_0166 PF00005 ABC transporter CYB_0167 PF00005 ABC transporter CYB_0168 PF07969 Amidohydrolase family CYB_0169 PF14883 Hypothetical glycosyl hydrolase family 13 CYB_0169 PF01522 Polysaccharide deacetylase CYB_0170 PF01383 CpcD/allophycocyanin linker domain CYB_0174 PF00072 Response regulator receiver domain CYB_0174 PF00486 Transcriptional regulatory protein, C terminal CYB_0177 PF01740 STAS domain CYB_0179 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_0180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYB_0180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYB_0181 PF06472 ABC transporter transmembrane region 2 CYB_0181 PF00005 ABC transporter CYB_0182 PF01969 Protein of unknown function DUF111 CYB_0184 PF00312 Ribosomal protein S15 CYB_0186 PF00502 Phycobilisome protein CYB_0187 PF00437 Type II/IV secretion system protein CYB_0188 PF01227 GTP cyclohydrolase I CYB_0189 PF00106 short chain dehydrogenase CYB_0190 PF00005 ABC transporter CYB_0190 PF08402 TOBE domain CYB_0192 PF00085 Thioredoxin CYB_0194 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CYB_0196 PF01479 S4 domain CYB_0196 PF00849 RNA pseudouridylate synthase CYB_0197 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_0200 PF02033 Ribosome-binding factor A CYB_0202 PF00875 DNA photolyase CYB_0202 PF03441 FAD binding domain of DNA photolyase CYB_0204 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_0206 PF03454 MoeA C-terminal region (domain IV) CYB_0206 PF03453 MoeA N-terminal region (domain I and II) CYB_0206 PF00994 Probable molybdopterin binding domain CYB_0207 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CYB_0208 PF00361 Proton-conducting membrane transporter CYB_0215 PF02142 MGS-like domain CYB_0215 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYB_0215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYB_0216 PF00124 Photosynthetic reaction centre protein CYB_0217 PF13840 ACT domain CYB_0217 PF01842 ACT domain CYB_0217 PF00696 Amino acid kinase family CYB_0223 PF02441 Flavoprotein CYB_0224 PF12697 Alpha/beta hydrolase family CYB_0225 PF02570 Precorrin-8X methylmutase CYB_0227 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYB_0229 PF17746 SfsA N-terminal OB domain CYB_0229 PF03749 Sugar fermentation stimulation protein RE domain CYB_0230 PF00925 GTP cyclohydrolase II CYB_0231 PF03372 Endonuclease/Exonuclease/phosphatase family CYB_0234 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0235 PF01625 Peptide methionine sulfoxide reductase CYB_0236 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0237 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0238 PF00005 ABC transporter CYB_0238 PF03459 TOBE domain CYB_0240 PF13380 CoA binding domain CYB_0240 PF13607 Succinyl-CoA ligase like flavodoxin domain CYB_0240 PF00583 Acetyltransferase (GNAT) family CYB_0241 PF00465 Iron-containing alcohol dehydrogenase CYB_0241 PF00171 Aldehyde dehydrogenase family CYB_0243 PF04055 Radical SAM superfamily CYB_0245 PF02901 Pyruvate formate lyase-like CYB_0245 PF01228 Glycine radical CYB_0246 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYB_0247 PF01385 Probable transposase CYB_0247 PF12323 Helix-turn-helix domain CYB_0247 PF07282 Putative transposase DNA-binding domain CYB_0248 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYB_0248 PF00005 ABC transporter CYB_0249 PF00072 Response regulator receiver domain CYB_0249 PF00486 Transcriptional regulatory protein, C terminal CYB_0253 PF00011 Hsp20/alpha crystallin family CYB_0260 PF00155 Aminotransferase class I and II CYB_0261 PF00588 SpoU rRNA Methylase family CYB_0262 PF00448 SRP54-type protein, GTPase domain CYB_0262 PF02881 SRP54-type protein, helical bundle domain CYB_0262 PF02978 Signal peptide binding domain CYB_0263 PF03055 Retinal pigment epithelial membrane protein CYB_0268 PF00005 ABC transporter CYB_0270 PF00334 Nucleoside diphosphate kinase CYB_0273 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CYB_0274 PF02872 5'-nucleotidase, C-terminal domain CYB_0274 PF00149 Calcineurin-like phosphoesterase CYB_0276 PF05419 GUN4-like CYB_0276 PF16416 ARM-like repeat domain, GUN4-N terminal CYB_0278 PF01964 Radical SAM ThiC family CYB_0279 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYB_0280 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_0281 PF00421 Photosystem II protein CYB_0282 PF01405 Photosystem II reaction centre T protein CYB_0283 PF00072 Response regulator receiver domain CYB_0285 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CYB_0287 PF04029 2-phosphosulpholactate phosphatase CYB_0289 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYB_0289 PF02774 Semialdehyde dehydrogenase, dimerisation domain CYB_0292 PF08245 Mur ligase middle domain CYB_0293 PF01098 Cell cycle protein CYB_0298 PF00361 Proton-conducting membrane transporter CYB_0299 PF00676 Dehydrogenase E1 component CYB_0301 PF10458 Valyl tRNA synthetase tRNA binding arm CYB_0301 PF08264 Anticodon-binding domain of tRNA CYB_0301 PF00133 tRNA synthetases class I (I, L, M and V) CYB_0302 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CYB_0304 PF02514 CobN/Magnesium Chelatase CYB_0308 PF07722 Peptidase C26 CYB_0310 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CYB_0312 PF02881 SRP54-type protein, helical bundle domain CYB_0312 PF00448 SRP54-type protein, GTPase domain CYB_0315 PF01435 Peptidase family M48 CYB_0316 PF03775 Septum formation inhibitor MinC, C-terminal domain CYB_0317 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CYB_0318 PF03776 Septum formation topological specificity factor MinE CYB_0321 PF02660 Glycerol-3-phosphate acyltransferase CYB_0322 PF00204 DNA gyrase B CYB_0322 PF01751 Toprim domain CYB_0322 PF00986 DNA gyrase B subunit, carboxyl terminus CYB_0322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_0323 PF01782 RimM N-terminal domain CYB_0323 PF05239 PRC-barrel domain CYB_0324 PF01145 SPFH domain / Band 7 family CYB_0325 PF01494 FAD binding domain CYB_0327 PF00330 Aconitase family (aconitate hydratase) CYB_0331 PF00144 Beta-lactamase CYB_0332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYB_0332 PF03466 LysR substrate binding domain CYB_0333 PF00591 Glycosyl transferase family, a/b domain CYB_0333 PF02885 Glycosyl transferase family, helical bundle domain CYB_0338 PF00465 Iron-containing alcohol dehydrogenase CYB_0340 PF00155 Aminotransferase class I and II CYB_0343 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CYB_0347 PF03707 Bacterial signalling protein N terminal repeat CYB_0347 PF00990 Diguanylate cyclase, GGDEF domain CYB_0347 PF00563 EAL domain CYB_0348 PF01597 Glycine cleavage H-protein CYB_0349 PF00561 alpha/beta hydrolase fold CYB_0350 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CYB_0350 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CYB_0352 PF00072 Response regulator receiver domain CYB_0352 PF00486 Transcriptional regulatory protein, C terminal CYB_0353 PF12323 Helix-turn-helix domain CYB_0353 PF07282 Putative transposase DNA-binding domain CYB_0353 PF01385 Probable transposase CYB_0357 PF01116 Fructose-bisphosphate aldolase class-II CYB_0359 PF01177 Asp/Glu/Hydantoin racemase CYB_0360 PF01520 N-acetylmuramoyl-L-alanine amidase CYB_0362 PF05175 Methyltransferase small domain CYB_0367 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CYB_0371 PF00124 Photosynthetic reaction centre protein CYB_0372 PF03699 Uncharacterised protein family (UPF0182) CYB_0375 PF12804 MobA-like NTP transferase domain CYB_0378 PF01230 HIT domain CYB_0379 PF02570 Precorrin-8X methylmutase CYB_0381 PF00753 Metallo-beta-lactamase superfamily CYB_0381 PF01613 Flavin reductase like domain CYB_0382 PF16360 GTP-binding GTPase Middle Region CYB_0382 PF13167 GTP-binding GTPase N-terminal CYB_0382 PF01926 50S ribosome-binding GTPase CYB_0393 PF07969 Amidohydrolase family CYB_0394 PF01812 5-formyltetrahydrofolate cyclo-ligase family CYB_0395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYB_0397 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYB_0397 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYB_0398 PF00005 ABC transporter CYB_0398 PF08402 TOBE domain CYB_0401 PF03459 TOBE domain CYB_0406 PF03206 Nitrogen fixation protein NifW CYB_0407 PF05082 Rop-like CYB_0408 PF03270 Protein of unknown function, DUF269 CYB_0409 PF02579 Dinitrogenase iron-molybdenum cofactor CYB_0410 PF00148 Nitrogenase component 1 type Oxidoreductase CYB_0414 PF00210 Ferritin-like domain CYB_0417 PF04055 Radical SAM superfamily CYB_0417 PF02579 Dinitrogenase iron-molybdenum cofactor CYB_0418 PF12838 4Fe-4S dicluster domain CYB_0420 PF04324 BFD-like [2Fe-2S] binding domain CYB_0420 PF01106 NifU-like domain CYB_0420 PF01592 NifU-like N terminal domain CYB_0421 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CYB_0422 PF00148 Nitrogenase component 1 type Oxidoreductase CYB_0424 PF00682 HMGL-like CYB_0428 PF07690 Major Facilitator Superfamily CYB_0431 PF00502 Phycobilisome protein CYB_0431 PF00427 Phycobilisome Linker polypeptide CYB_0432 PF05496 Holliday junction DNA helicase RuvB P-loop domain CYB_0432 PF17864 RuvB AAA lid domain CYB_0432 PF05491 RuvB C-terminal winged helix domain CYB_0433 PF00124 Photosynthetic reaction centre protein CYB_0434 PF00814 Glycoprotease family CYB_0435 PF01132 Elongation factor P (EF-P) OB domain CYB_0435 PF08207 Elongation factor P (EF-P) KOW-like domain CYB_0435 PF09285 Elongation factor P, C-terminal CYB_0436 PF00364 Biotin-requiring enzyme CYB_0437 PF00149 Calcineurin-like phosphoesterase CYB_0438 PF01507 Phosphoadenosine phosphosulfate reductase family CYB_0441 PF00485 Phosphoribulokinase / Uridine kinase family CYB_0442 PF04012 PspA/IM30 family CYB_0444 PF00459 Inositol monophosphatase family CYB_0445 PF00977 Histidine biosynthesis protein CYB_0448 PF00886 Ribosomal protein S16 CYB_0450 PF02583 Metal-sensitive transcriptional repressor CYB_0451 PF00348 Polyprenyl synthetase CYB_0452 PF10502 Signal peptidase, peptidase S26 CYB_0455 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CYB_0457 PF02237 Biotin protein ligase C terminal domain CYB_0457 PF03099 Biotin/lipoate A/B protein ligase family CYB_0457 PF08279 HTH domain CYB_0460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CYB_0461 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CYB_0463 PF01734 Patatin-like phospholipase CYB_0464 PF00300 Histidine phosphatase superfamily (branch 1) CYB_0465 PF01513 ATP-NAD kinase CYB_0466 PF00069 Protein kinase domain CYB_0475 PF07963 Prokaryotic N-terminal methylation motif CYB_0475 PF00114 Pilin (bacterial filament) CYB_0479 PF01063 Amino-transferase class IV CYB_0481 PF01595 Cyclin M transmembrane N-terminal domain CYB_0481 PF00571 CBS domain CYB_0481 PF03471 Transporter associated domain CYB_0482 PF01276 Orn/Lys/Arg decarboxylase, major domain CYB_0482 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CYB_0484 PF07660 Secretin and TonB N terminus short domain CYB_0484 PF11741 AMIN domain CYB_0484 PF03958 Bacterial type II/III secretion system short domain CYB_0484 PF00263 Bacterial type II and III secretion system protein CYB_0488 PF06745 KaiC CYB_0489 PF07689 KaiB domain CYB_0490 PF07688 KaiA C-terminal domain CYB_0491 PF01156 Inosine-uridine preferring nucleoside hydrolase CYB_0492 PF01066 CDP-alcohol phosphatidyltransferase CYB_0493 PF02075 Crossover junction endodeoxyribonuclease RuvC CYB_0494 PF00004 ATPase family associated with various cellular activities (AAA) CYB_0494 PF05362 Lon protease (S16) C-terminal proteolytic domain CYB_0494 PF02190 ATP-dependent protease La (LON) substrate-binding domain CYB_0497 PF01820 D-ala D-ala ligase N-terminus CYB_0497 PF07478 D-ala D-ala ligase C-terminus CYB_0500 PF13847 Methyltransferase domain CYB_0500 PF01938 TRAM domain CYB_0503 PF00583 Acetyltransferase (GNAT) family CYB_0505 PF13416 Bacterial extracellular solute-binding protein CYB_0506 PF00762 Ferrochelatase CYB_0507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_0507 PF00512 His Kinase A (phospho-acceptor) domain CYB_0507 PF01627 Hpt domain CYB_0507 PF00072 Response regulator receiver domain CYB_0507 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CYB_0507 PF00672 HAMP domain CYB_0511 PF01702 Queuine tRNA-ribosyltransferase CYB_0515 PF13460 NAD(P)H-binding CYB_0516 PF00171 Aldehyde dehydrogenase family CYB_0518 PF01385 Probable transposase CYB_0518 PF12323 Helix-turn-helix domain CYB_0518 PF07282 Putative transposase DNA-binding domain CYB_0519 PF01472 PUA domain CYB_0519 PF00696 Amino acid kinase family CYB_0522 PF00069 Protein kinase domain CYB_0522 PF03793 PASTA domain CYB_0523 PF00578 AhpC/TSA family CYB_0524 PF05198 Translation initiation factor IF-3, N-terminal domain CYB_0524 PF00707 Translation initiation factor IF-3, C-terminal domain CYB_0526 PF10415 Fumarase C C-terminus CYB_0526 PF00206 Lyase CYB_0533 PF01040 UbiA prenyltransferase family CYB_0535 PF04715 Anthranilate synthase component I, N terminal region CYB_0535 PF00425 chorismate binding enzyme CYB_0538 PF01551 Peptidase family M23 CYB_0540 PF01212 Beta-eliminating lyase CYB_0541 PF01252 Signal peptidase (SPase) II CYB_0545 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0546 PF07499 RuvA, C-terminal domain CYB_0546 PF01330 RuvA N terminal domain CYB_0547 PF01467 Cytidylyltransferase-like CYB_0549 PF12838 4Fe-4S dicluster domain CYB_0553 PF00171 Aldehyde dehydrogenase family CYB_0556 PF04107 Glutamate-cysteine ligase family 2(GCS2) CYB_0557 PF09335 SNARE associated Golgi protein CYB_0559 PF01042 Endoribonuclease L-PSP CYB_0560 PF01809 Putative membrane protein insertion efficiency factor CYB_0561 PF07690 Major Facilitator Superfamily CYB_0561 PF00083 Sugar (and other) transporter CYB_0562 PF08486 Stage II sporulation protein CYB_0565 PF00378 Enoyl-CoA hydratase/isomerase CYB_0566 PF02602 Uroporphyrinogen-III synthase HemD CYB_0568 PF00502 Phycobilisome protein CYB_0568 PF00427 Phycobilisome Linker polypeptide CYB_0571 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_0578 PF13180 PDZ domain CYB_0579 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CYB_0580 PF00571 CBS domain CYB_0580 PF00005 ABC transporter CYB_0581 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0582 PF04545 Sigma-70, region 4 CYB_0582 PF04542 Sigma-70 region 2 CYB_0584 PF04294 VanW like protein CYB_0590 PF03787 RAMP superfamily CYB_0597 PF14495 Cytochrome c-550 domain CYB_0599 PF09620 CRISPR-associated protein (Cas_csx3) CYB_0601 PF00005 ABC transporter CYB_0602 PF00005 ABC transporter CYB_0603 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0607 PF10431 C-terminal, D2-small domain, of ClpB protein CYB_0607 PF02861 Clp amino terminal domain, pathogenicity island component CYB_0607 PF07724 AAA domain (Cdc48 subfamily) CYB_0607 PF17871 AAA lid domain CYB_0607 PF00004 ATPase family associated with various cellular activities (AAA) CYB_0608 PF00574 Clp protease CYB_0610 PF00574 Clp protease CYB_0612 PF06206 CpeT/CpcT family (DUF1001) CYB_0613 PF00390 Malic enzyme, N-terminal domain CYB_0613 PF03949 Malic enzyme, NAD binding domain CYB_0619 PF14495 Cytochrome c-550 domain CYB_0623 PF03109 ABC1 family CYB_0625 PF02683 Cytochrome C biogenesis protein transmembrane region CYB_0626 PF05140 ResB-like family CYB_0628 PF02941 Ferredoxin thioredoxin reductase variable alpha chain CYB_0631 PF01434 Peptidase family M41 CYB_0631 PF17862 AAA+ lid domain CYB_0631 PF06480 FtsH Extracellular CYB_0631 PF00004 ATPase family associated with various cellular activities (AAA) CYB_0632 PF11897 Protein of unknown function (DUF3417) CYB_0632 PF00343 Carbohydrate phosphorylase CYB_0633 PF08486 Stage II sporulation protein CYB_0635 PF14437 MafB19-like deaminase CYB_0636 PF13180 PDZ domain CYB_0637 PF14032 PknH-like extracellular domain CYB_0637 PF00069 Protein kinase domain CYB_0642 PF01926 50S ribosome-binding GTPase CYB_0643 PF04055 Radical SAM superfamily CYB_0643 PF06463 Molybdenum Cofactor Synthesis C CYB_0644 PF10664 Cyanobacterial and plastid NDH-1 subunit M CYB_0646 PF08323 Starch synthase catalytic domain CYB_0646 PF00534 Glycosyl transferases group 1 CYB_0647 PF03065 Glycosyl hydrolase family 57 CYB_0647 PF09210 Domain of unknown function (DUF1957) CYB_0648 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYB_0648 PF00205 Thiamine pyrophosphate enzyme, central domain CYB_0648 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYB_0649 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase CYB_0649 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CYB_0650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CYB_0650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CYB_0651 PF01841 Transglutaminase-like superfamily CYB_0652 PF01925 Sulfite exporter TauE/SafE CYB_0653 PF00800 Prephenate dehydratase CYB_0653 PF01842 ACT domain CYB_0653 PF01817 Chorismate mutase type II CYB_0655 PF00842 Alanine racemase, C-terminal domain CYB_0655 PF01168 Alanine racemase, N-terminal domain CYB_0656 PF01343 Peptidase family S49 CYB_0660 PF01040 UbiA prenyltransferase family CYB_0662 PF00140 Sigma-70 factor, region 1.2 CYB_0662 PF04545 Sigma-70, region 4 CYB_0662 PF04539 Sigma-70 region 3 CYB_0662 PF04542 Sigma-70 region 2 CYB_0667 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CYB_0669 PF00271 Helicase conserved C-terminal domain CYB_0669 PF16124 RecQ zinc-binding CYB_0669 PF00270 DEAD/DEAH box helicase CYB_0671 PF00475 Imidazoleglycerol-phosphate dehydratase CYB_0674 PF01593 Flavin containing amine oxidoreductase CYB_0677 PF16657 Maltogenic Amylase, C-terminal domain CYB_0677 PF00128 Alpha amylase, catalytic domain CYB_0678 PF17782 DprA winged helix domain CYB_0678 PF02481 DNA recombination-mediator protein A CYB_0679 PF02586 SOS response associated peptidase (SRAP) CYB_0681 PF00474 Sodium:solute symporter family CYB_0683 PF02617 ATP-dependent Clp protease adaptor protein ClpS CYB_0688 PF00483 Nucleotidyl transferase CYB_0688 PF01050 Mannose-6-phosphate isomerase CYB_0694 PF13393 Histidyl-tRNA synthetase CYB_0694 PF03129 Anticodon binding domain CYB_0698 PF05996 Ferredoxin-dependent bilin reductase CYB_0701 PF02548 Ketopantoate hydroxymethyltransferase CYB_0703 PF00534 Glycosyl transferases group 1 CYB_0703 PF13439 Glycosyltransferase Family 4 CYB_0707 PF02254 TrkA-N domain CYB_0707 PF07885 Ion channel CYB_0708 PF02637 GatB domain CYB_0708 PF02934 GatB/GatE catalytic domain CYB_0709 PF02545 Maf-like protein CYB_0710 PF00708 Acylphosphatase CYB_0712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_0712 PF00512 His Kinase A (phospho-acceptor) domain CYB_0712 PF00672 HAMP domain CYB_0714 PF17863 AAA lid domain CYB_0714 PF13519 von Willebrand factor type A domain CYB_0714 PF01078 Magnesium chelatase, subunit ChlI CYB_0715 PF00171 Aldehyde dehydrogenase family CYB_0718 PF00873 AcrB/AcrD/AcrF family CYB_0723 PF00563 EAL domain CYB_0723 PF00990 Diguanylate cyclase, GGDEF domain CYB_0723 PF00498 FHA domain CYB_0724 PF00999 Sodium/hydrogen exchanger family CYB_0725 PF01195 Peptidyl-tRNA hydrolase CYB_0726 PF00072 Response regulator receiver domain CYB_0729 PF13378 Enolase C-terminal domain-like CYB_0732 PF05193 Peptidase M16 inactive domain CYB_0732 PF00675 Insulinase (Peptidase family M16) CYB_0733 PF02163 Peptidase family M50 CYB_0733 PF00571 CBS domain CYB_0734 PF17975 Ribonucleotide reductase alpha domain CYB_0735 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CYB_0735 PF01409 tRNA synthetases class II core domain (F) CYB_0738 PF00005 ABC transporter CYB_0739 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CYB_0739 PF12706 Beta-lactamase superfamily domain CYB_0740 PF00535 Glycosyl transferase family 2 CYB_0740 PF03170 Bacterial cellulose synthase subunit CYB_0740 PF07238 PilZ domain CYB_0741 PF01016 Ribosomal L27 protein CYB_0742 PF00829 Ribosomal prokaryotic L21 protein CYB_0745 PF00226 DnaJ domain CYB_0745 PF01556 DnaJ C terminal domain CYB_0746 PF06150 ChaB CYB_0747 PF04389 Peptidase family M28 CYB_0748 PF13419 Haloacid dehalogenase-like hydrolase CYB_0749 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYB_0749 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYB_0752 PF14815 NUDIX domain CYB_0752 PF00730 HhH-GPD superfamily base excision DNA repair protein CYB_0755 PF14622 Ribonuclease-III-like CYB_0755 PF00035 Double-stranded RNA binding motif CYB_0759 PF00691 OmpA family CYB_0759 PF13488 Glycine zipper CYB_0765 PF00689 Cation transporting ATPase, C-terminus CYB_0765 PF00690 Cation transporter/ATPase, N-terminus CYB_0766 PF00583 Acetyltransferase (GNAT) family CYB_0769 PF01883 Iron-sulfur cluster assembly protein CYB_0769 PF10609 NUBPL iron-transfer P-loop NTPase CYB_0770 PF07244 Surface antigen variable number repeat CYB_0770 PF01103 Surface antigen CYB_0772 PF13458 Periplasmic binding protein CYB_0774 PF12399 Branched-chain amino acid ATP-binding cassette transporter CYB_0774 PF00005 ABC transporter CYB_0775 PF00005 ABC transporter CYB_0776 PF02463 RecF/RecN/SMC N terminal domain CYB_0780 PF01494 FAD binding domain CYB_0783 PF02542 YgbB family CYB_0784 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYB_0786 PF00534 Glycosyl transferases group 1 CYB_0786 PF13439 Glycosyltransferase Family 4 CYB_0796 PF00857 Isochorismatase family CYB_0798 PF13614 AAA domain CYB_0801 PF04471 Restriction endonuclease CYB_0801 PF14338 Mrr N-terminal domain CYB_0803 PF00875 DNA photolyase CYB_0803 PF03441 FAD binding domain of DNA photolyase CYB_0804 PF00216 Bacterial DNA-binding protein CYB_0807 PF12344 Ultra-violet resistance protein B CYB_0807 PF04851 Type III restriction enzyme, res subunit CYB_0807 PF17757 UvrB interaction domain CYB_0807 PF02151 UvrB/uvrC motif CYB_0807 PF00271 Helicase conserved C-terminal domain CYB_0808 PF00924 Mechanosensitive ion channel CYB_0808 PF12794 Mechanosensitive ion channel inner membrane domain 1 CYB_0808 PF12795 Mechanosensitive ion channel porin domain CYB_0810 PF03040 CemA family CYB_0812 PF06596 Photosystem II reaction centre X protein (PsbX) CYB_0813 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain CYB_0814 PF12323 Helix-turn-helix domain CYB_0814 PF01385 Probable transposase CYB_0814 PF07282 Putative transposase DNA-binding domain CYB_0815 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_0816 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYB_0816 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYB_0818 PF00082 Subtilase family CYB_0819 PF01618 MotA/TolQ/ExbB proton channel family CYB_0820 PF02472 Biopolymer transport protein ExbD/TolR CYB_0821 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYB_0821 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYB_0822 PF00595 PDZ domain CYB_0822 PF03572 Peptidase family S41 CYB_0823 PF00171 Aldehyde dehydrogenase family CYB_0825 PF06965 Na+/H+ antiporter 1 CYB_0825 PF13462 Thioredoxin CYB_0828 PF01368 DHH family CYB_0828 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CYB_0828 PF02272 DHHA1 domain CYB_0828 PF17768 RecJ OB domain CYB_0830 PF01725 Ham1 family CYB_0832 PF02223 Thymidylate kinase CYB_0834 PF09827 CRISPR associated protein Cas2 CYB_0835 PF01867 CRISPR associated protein Cas1 CYB_0847 PF00575 S1 RNA binding domain CYB_0848 PF02082 Transcriptional regulator CYB_0849 PF07726 ATPase family associated with various cellular activities (AAA) CYB_0849 PF17863 AAA lid domain CYB_0850 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0852 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYB_0852 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYB_0853 PF00421 Photosystem II protein CYB_0854 PF00124 Photosynthetic reaction centre protein CYB_0855 PF08041 PetM family of cytochrome b6f complex subunit 7 CYB_0856 PF08546 Ketopantoate reductase PanE/ApbA C terminal CYB_0856 PF02558 Ketopantoate reductase PanE/ApbA CYB_0857 PF00106 short chain dehydrogenase CYB_0858 PF00512 His Kinase A (phospho-acceptor) domain CYB_0858 PF00989 PAS fold CYB_0858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_0859 PF00072 Response regulator receiver domain CYB_0859 PF00196 Bacterial regulatory proteins, luxR family CYB_0862 PF00440 Bacterial regulatory proteins, tetR family CYB_0864 PF00581 Rhodanese-like domain CYB_0869 PF12838 4Fe-4S dicluster domain CYB_0870 PF00146 NADH dehydrogenase CYB_0872 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CYB_0874 PF02627 Carboxymuconolactone decarboxylase family CYB_0877 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYB_0878 PF01774 UreD urease accessory protein CYB_0881 PF00561 alpha/beta hydrolase fold CYB_0882 PF10726 Protein of function (DUF2518) CYB_0883 PF13545 Crp-like helix-turn-helix domain CYB_0884 PF01975 Survival protein SurE CYB_0889 PF00117 Glutamine amidotransferase class-I CYB_0890 PF04055 Radical SAM superfamily CYB_0891 PF04461 Protein of unknown function (DUF520) CYB_0892 PF00106 short chain dehydrogenase CYB_0894 PF00563 EAL domain CYB_0894 PF00498 FHA domain CYB_0894 PF00990 Diguanylate cyclase, GGDEF domain CYB_0895 PF00905 Penicillin binding protein transpeptidase domain CYB_0895 PF03717 Penicillin-binding Protein dimerisation domain CYB_0896 PF00216 Bacterial DNA-binding protein CYB_0897 PF00155 Aminotransferase class I and II CYB_0901 PF00551 Formyl transferase CYB_0905 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CYB_0906 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYB_0908 PF11965 Domain of unknown function (DUF3479) CYB_0908 PF02514 CobN/Magnesium Chelatase CYB_0909 PF01478 Type IV leader peptidase family CYB_0909 PF06750 Bacterial Peptidase A24 N-terminal domain CYB_0911 PF08443 RimK-like ATP-grasp domain CYB_0911 PF02875 Mur ligase family, glutamate ligase domain CYB_0911 PF08245 Mur ligase middle domain CYB_0916 PF00156 Phosphoribosyl transferase domain CYB_0917 PF00072 Response regulator receiver domain CYB_0918 PF00164 Ribosomal protein S12/S23 CYB_0919 PF00177 Ribosomal protein S7p/S5e CYB_0920 PF00679 Elongation factor G C-terminus CYB_0920 PF03144 Elongation factor Tu domain 2 CYB_0920 PF00009 Elongation factor Tu GTP binding domain CYB_0920 PF03764 Elongation factor G, domain IV CYB_0920 PF14492 Elongation Factor G, domain II CYB_0921 PF00009 Elongation factor Tu GTP binding domain CYB_0921 PF03144 Elongation factor Tu domain 2 CYB_0921 PF03143 Elongation factor Tu C-terminal domain CYB_0922 PF00338 Ribosomal protein S10p/S20e CYB_0924 PF01113 Dihydrodipicolinate reductase, N-terminus CYB_0924 PF05173 Dihydrodipicolinate reductase, C-terminus CYB_0927 PF01266 FAD dependent oxidoreductase CYB_0929 PF00902 Sec-independent protein translocase protein (TatC) CYB_0930 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0931 PF00528 Binding-protein-dependent transport system inner membrane component CYB_0932 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYB_0933 PF00005 ABC transporter CYB_0937 PF00290 Tryptophan synthase alpha chain CYB_0939 PF00502 Phycobilisome protein CYB_0940 PF00502 Phycobilisome protein CYB_0941 PF01383 CpcD/allophycocyanin linker domain CYB_0942 PF03130 PBS lyase HEAT-like repeat CYB_0944 PF00427 Phycobilisome Linker polypeptide CYB_0946 PF03109 ABC1 family CYB_0948 PF00850 Histone deacetylase domain CYB_0949 PF00069 Protein kinase domain CYB_0950 PF00905 Penicillin binding protein transpeptidase domain CYB_0950 PF17092 Penicillin-binding protein OB-like domain CYB_0950 PF00912 Transglycosylase CYB_0956 PF00561 alpha/beta hydrolase fold CYB_0958 PF13180 PDZ domain CYB_0958 PF17820 PDZ domain CYB_0960 PF00085 Thioredoxin CYB_0961 PF02538 Hydantoinase B/oxoprolinase CYB_0966 PF05175 Methyltransferase small domain CYB_0970 PF01136 Peptidase family U32 CYB_0970 PF12392 Collagenase CYB_0971 PF10369 Small subunit of acetolactate synthase CYB_0974 PF02685 Glucokinase CYB_0976 PF08241 Methyltransferase domain CYB_0978 PF01494 FAD binding domain CYB_0983 PF04127 DNA / pantothenate metabolism flavoprotein CYB_0983 PF02441 Flavoprotein CYB_0984 PF01343 Peptidase family S49 CYB_0986 PF00398 Ribosomal RNA adenine dimethylase CYB_0987 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CYB_0987 PF00072 Response regulator receiver domain CYB_0987 PF01627 Hpt domain CYB_0987 PF00512 His Kinase A (phospho-acceptor) domain CYB_0987 PF00672 HAMP domain CYB_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_0989 PF01106 NifU-like domain CYB_0990 PF02163 Peptidase family M50 CYB_0990 PF13180 PDZ domain CYB_0991 PF00730 HhH-GPD superfamily base excision DNA repair protein CYB_0991 PF00633 Helix-hairpin-helix motif CYB_0992 PF03668 P-loop ATPase protein family CYB_0993 PF01933 Uncharacterised protein family UPF0052 CYB_0994 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CYB_0996 PF00905 Penicillin binding protein transpeptidase domain CYB_0996 PF03717 Penicillin-binding Protein dimerisation domain CYB_0997 PF00535 Glycosyl transferase family 2 CYB_0998 PF07698 7TM receptor with intracellular HD hydrolase CYB_0998 PF07697 7TM-HD extracellular CYB_0998 PF01966 HD domain CYB_1001 PF03816 Cell envelope-related transcriptional attenuator domain CYB_1003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1003 PF00183 Hsp90 protein CYB_1005 PF00120 Glutamine synthetase, catalytic domain CYB_1006 PF08501 Shikimate dehydrogenase substrate binding domain CYB_1006 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CYB_1008 PF00072 Response regulator receiver domain CYB_1008 PF00486 Transcriptional regulatory protein, C terminal CYB_1012 PF00202 Aminotransferase class-III CYB_1013 PF00148 Nitrogenase component 1 type Oxidoreductase CYB_1015 PF00106 short chain dehydrogenase CYB_1016 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CYB_1018 PF13580 SIS domain CYB_1020 PF00300 Histidine phosphatase superfamily (branch 1) CYB_1022 PF00133 tRNA synthetases class I (I, L, M and V) CYB_1022 PF08264 Anticodon-binding domain of tRNA CYB_1022 PF06827 Zinc finger found in FPG and IleRS CYB_1026 PF00557 Metallopeptidase family M24 CYB_1026 PF01321 Creatinase/Prolidase N-terminal domain CYB_1027 PF04055 Radical SAM superfamily CYB_1028 PF06206 CpeT/CpcT family (DUF1001) CYB_1029 PF03631 Virulence factor BrkB CYB_1030 PF03481 Putative GTP-binding controlling metal-binding CYB_1030 PF01300 Telomere recombination CYB_1031 PF00731 AIR carboxylase CYB_1040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYB_1044 PF00072 Response regulator receiver domain CYB_1044 PF00486 Transcriptional regulatory protein, C terminal CYB_1049 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CYB_1049 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CYB_1051 PF00830 Ribosomal L28 family CYB_1057 PF00578 AhpC/TSA family CYB_1058 PF02557 D-alanyl-D-alanine carboxypeptidase CYB_1060 PF01593 Flavin containing amine oxidoreductase CYB_1063 PF07969 Amidohydrolase family CYB_1066 PF03109 ABC1 family CYB_1067 PF00483 Nucleotidyl transferase CYB_1070 PF14306 PUA-like domain CYB_1070 PF01747 ATP-sulfurylase CYB_1073 PF01728 FtsJ-like methyltransferase CYB_1073 PF01479 S4 domain CYB_1074 PF00005 ABC transporter CYB_1075 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1076 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1077 PF12849 PBP superfamily domain CYB_1080 PF01281 Ribosomal protein L9, N-terminal domain CYB_1080 PF03948 Ribosomal protein L9, C-terminal domain CYB_1081 PF00772 DnaB-like helicase N terminal domain CYB_1081 PF14528 LAGLIDADG-like domain CYB_1081 PF03796 DnaB-like helicase C terminal domain CYB_1083 PF00731 AIR carboxylase CYB_1084 PF03741 Integral membrane protein TerC family CYB_1086 PF00005 ABC transporter CYB_1088 PF13411 MerR HTH family regulatory protein CYB_1089 PF01380 SIS domain CYB_1092 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_1094 PF01479 S4 domain CYB_1094 PF00163 Ribosomal protein S4/S9 N-terminal domain CYB_1095 PF16363 GDP-mannose 4,6 dehydratase CYB_1096 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CYB_1096 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CYB_1099 PF09115 DNA polymerase III, delta subunit, C terminal CYB_1100 PF13393 Histidyl-tRNA synthetase CYB_1106 PF01368 DHH family CYB_1106 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CYB_1106 PF17768 RecJ OB domain CYB_1106 PF02272 DHHA1 domain CYB_1107 PF13476 AAA domain CYB_1111 PF02514 CobN/Magnesium Chelatase CYB_1112 PF00923 Transaldolase/Fructose-6-phosphate aldolase CYB_1112 PF13202 EF hand CYB_1113 PF01479 S4 domain CYB_1113 PF00849 RNA pseudouridylate synthase CYB_1115 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CYB_1115 PF02896 PEP-utilising enzyme, TIM barrel domain CYB_1115 PF00391 PEP-utilising enzyme, mobile domain CYB_1116 PF02817 e3 binding domain CYB_1116 PF00364 Biotin-requiring enzyme CYB_1116 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYB_1117 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CYB_1117 PF04055 Radical SAM superfamily CYB_1119 PF02779 Transketolase, pyrimidine binding domain CYB_1119 PF02780 Transketolase, C-terminal domain CYB_1119 PF00456 Transketolase, thiamine diphosphate binding domain CYB_1126 PF04073 Aminoacyl-tRNA editing domain CYB_1126 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYB_1126 PF03129 Anticodon binding domain CYB_1127 PF00009 Elongation factor Tu GTP binding domain CYB_1127 PF11987 Translation-initiation factor 2 CYB_1127 PF04760 Translation initiation factor IF-2, N-terminal region CYB_1130 PF00072 Response regulator receiver domain CYB_1135 PF17886 HSP20-like domain found in ArsA CYB_1135 PF02374 Anion-transporting ATPase CYB_1141 PF01571 Aminomethyltransferase folate-binding domain CYB_1141 PF08669 Glycine cleavage T-protein C-terminal barrel domain CYB_1142 PF04545 Sigma-70, region 4 CYB_1142 PF00140 Sigma-70 factor, region 1.2 CYB_1142 PF04539 Sigma-70 region 3 CYB_1142 PF04542 Sigma-70 region 2 CYB_1145 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CYB_1145 PF09363 XFP C-terminal domain CYB_1145 PF09364 XFP N-terminal domain CYB_1146 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CYB_1146 PF00953 Glycosyl transferase family 4 CYB_1149 PF12697 Alpha/beta hydrolase family CYB_1152 PF03092 BT1 family CYB_1159 PF01594 AI-2E family transporter CYB_1161 PF00152 tRNA synthetases class II (D, K and N) CYB_1161 PF02938 GAD domain CYB_1161 PF01336 OB-fold nucleic acid binding domain CYB_1162 PF01297 Zinc-uptake complex component A periplasmic CYB_1163 PF00005 ABC transporter CYB_1164 PF00950 ABC 3 transport family CYB_1165 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CYB_1166 PF02527 rRNA small subunit methyltransferase G CYB_1168 PF02540 NAD synthase CYB_1168 PF00117 Glutamine amidotransferase class-I CYB_1168 PF00958 GMP synthase C terminal domain CYB_1171 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYB_1171 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYB_1181 PF00795 Carbon-nitrogen hydrolase CYB_1183 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CYB_1183 PF07733 Bacterial DNA polymerase III alpha NTPase domain CYB_1183 PF01336 OB-fold nucleic acid binding domain CYB_1183 PF02811 PHP domain CYB_1183 PF14579 Helix-hairpin-helix motif CYB_1184 PF00586 AIR synthase related protein, N-terminal domain CYB_1184 PF02769 AIR synthase related protein, C-terminal domain CYB_1186 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1186 PF12911 N-terminal TM domain of oligopeptide transport permease C CYB_1193 PF01593 Flavin containing amine oxidoreductase CYB_1194 PF00805 Pentapeptide repeats (8 copies) CYB_1194 PF00069 Protein kinase domain CYB_1196 PF17755 UvrA DNA-binding domain CYB_1196 PF17760 UvrA interaction domain CYB_1197 PF11992 Domain of unknown function (DUF3488) CYB_1197 PF13559 Domain of unknown function (DUF4129) CYB_1197 PF01841 Transglutaminase-like superfamily CYB_1198 PF00245 Alkaline phosphatase CYB_1200 PF01047 MarR family CYB_1206 PF00005 ABC transporter CYB_1206 PF13732 Domain of unknown function (DUF4162) CYB_1207 PF00271 Helicase conserved C-terminal domain CYB_1207 PF17757 UvrB interaction domain CYB_1207 PF00270 DEAD/DEAH box helicase CYB_1207 PF03461 TRCF domain CYB_1207 PF02559 CarD-like/TRCF domain CYB_1208 PF01654 Cytochrome bd terminal oxidase subunit I CYB_1209 PF02322 Cytochrome bd terminal oxidase subunit II CYB_1211 PF05552 Conserved TM helix CYB_1212 PF00583 Acetyltransferase (GNAT) family CYB_1214 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CYB_1214 PF02222 ATP-grasp domain CYB_1217 PF01746 tRNA (Guanine-1)-methyltransferase CYB_1219 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CYB_1220 PF00467 KOW motif CYB_1220 PF02357 Transcription termination factor nusG CYB_1221 PF00298 Ribosomal protein L11, RNA binding domain CYB_1221 PF03946 Ribosomal protein L11, N-terminal domain CYB_1222 PF00687 Ribosomal protein L1p/L10e family CYB_1223 PF00466 Ribosomal protein L10 CYB_1224 PF00542 Ribosomal protein L7/L12 C-terminal domain CYB_1224 PF16320 Ribosomal protein L7/L12 dimerisation domain CYB_1229 PF01165 Ribosomal protein S21 CYB_1230 PF00089 Trypsin CYB_1231 PF13614 AAA domain CYB_1231 PF00376 MerR family regulatory protein CYB_1233 PF13288 DXP reductoisomerase C-terminal domain CYB_1233 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CYB_1233 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CYB_1234 PF00005 ABC transporter CYB_1234 PF00664 ABC transporter transmembrane region CYB_1236 PF00117 Glutamine amidotransferase class-I CYB_1236 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CYB_1237 PF00114 Pilin (bacterial filament) CYB_1237 PF07963 Prokaryotic N-terminal methylation motif CYB_1242 PF00072 Response regulator receiver domain CYB_1242 PF00196 Bacterial regulatory proteins, luxR family CYB_1244 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CYB_1244 PF06827 Zinc finger found in FPG and IleRS CYB_1244 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CYB_1245 PF02427 Photosystem I reaction centre subunit IV / PsaE CYB_1248 PF02540 NAD synthase CYB_1248 PF00795 Carbon-nitrogen hydrolase CYB_1249 PF00989 PAS fold CYB_1249 PF00512 His Kinase A (phospho-acceptor) domain CYB_1249 PF16736 Single Cache-like CYB_1249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1251 PF08459 UvrC Helix-hairpin-helix N-terminal CYB_1251 PF01541 GIY-YIG catalytic domain CYB_1251 PF12826 Helix-hairpin-helix motif CYB_1251 PF02151 UvrB/uvrC motif CYB_1253 PF04898 Glutamate synthase central domain CYB_1253 PF01493 GXGXG motif CYB_1253 PF01645 Conserved region in glutamate synthase CYB_1253 PF00310 Glutamine amidotransferases class-II CYB_1254 PF02915 Rubrerythrin CYB_1256 PF18071 HMW1C N-terminal CYB_1256 PF18254 HMW1 domain 2 CYB_1257 PF02417 Chromate transporter CYB_1261 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term CYB_1261 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus CYB_1262 PF00155 Aminotransferase class I and II CYB_1263 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYB_1263 PF01926 50S ribosome-binding GTPase CYB_1264 PF01668 SmpB protein CYB_1266 PF13417 Glutathione S-transferase, N-terminal domain CYB_1267 PF00355 Rieske [2Fe-2S] domain CYB_1267 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CYB_1268 PF01926 50S ribosome-binding GTPase CYB_1268 PF07650 KH domain CYB_1269 PF08486 Stage II sporulation protein CYB_1269 PF04122 Putative cell wall binding repeat 2 CYB_1272 PF14245 Type IV pilin PilA CYB_1272 PF07963 Prokaryotic N-terminal methylation motif CYB_1276 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_1278 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CYB_1279 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CYB_1281 PF03099 Biotin/lipoate A/B protein ligase family CYB_1283 PF01048 Phosphorylase superfamily CYB_1289 PF00132 Bacterial transferase hexapeptide (six repeats) CYB_1289 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CYB_1290 PF05050 Methyltransferase FkbM domain CYB_1293 PF05711 Macrocin-O-methyltransferase (TylF) CYB_1294 PF05711 Macrocin-O-methyltransferase (TylF) CYB_1298 PF01593 Flavin containing amine oxidoreductase CYB_1299 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1300 PF00355 Rieske [2Fe-2S] domain CYB_1301 PF08402 TOBE domain CYB_1301 PF00005 ABC transporter CYB_1304 PF12169 DNA polymerase III subunits gamma and tau domain III CYB_1306 PF01121 Dephospho-CoA kinase CYB_1307 PF00682 HMGL-like CYB_1307 PF08502 LeuA allosteric (dimerisation) domain CYB_1309 PF02540 NAD synthase CYB_1311 PF08865 Domain of unknown function (DUF1830) CYB_1320 PF03190 Protein of unknown function, DUF255 CYB_1321 PF00583 Acetyltransferase (GNAT) family CYB_1326 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYB_1327 PF01795 MraW methylase family CYB_1330 PF00593 TonB dependent receptor CYB_1330 PF07715 TonB-dependent Receptor Plug Domain CYB_1334 PF02374 Anion-transporting ATPase CYB_1335 PF01653 NAD-dependent DNA ligase adenylation domain CYB_1335 PF12826 Helix-hairpin-helix motif CYB_1335 PF03120 NAD-dependent DNA ligase OB-fold domain CYB_1335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CYB_1335 PF00533 BRCA1 C Terminus (BRCT) domain CYB_1336 PF07724 AAA domain (Cdc48 subfamily) CYB_1336 PF10431 C-terminal, D2-small domain, of ClpB protein CYB_1336 PF06689 ClpX C4-type zinc finger CYB_1337 PF02254 TrkA-N domain CYB_1337 PF02080 TrkA-C domain CYB_1338 PF02386 Cation transport protein CYB_1339 PF07085 DRTGG domain CYB_1340 PF00075 RNase H CYB_1343 PF00072 Response regulator receiver domain CYB_1344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1344 PF07689 KaiB domain CYB_1344 PF00512 His Kinase A (phospho-acceptor) domain CYB_1348 PF02754 Cysteine-rich domain CYB_1350 PF01709 Transcriptional regulator CYB_1351 PF01906 Putative heavy-metal-binding CYB_1353 PF00294 pfkB family carbohydrate kinase CYB_1354 PF00196 Bacterial regulatory proteins, luxR family CYB_1354 PF00072 Response regulator receiver domain CYB_1358 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CYB_1358 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CYB_1360 PF00005 ABC transporter CYB_1361 PF01612 3'-5' exonuclease CYB_1361 PF00570 HRDC domain CYB_1362 PF00253 Ribosomal protein S14p/S29e CYB_1363 PF01926 50S ribosome-binding GTPase CYB_1363 PF12631 MnmE helical domain CYB_1363 PF10396 GTP-binding protein TrmE N-terminus CYB_1368 PF13361 UvrD-like helicase C-terminal domain CYB_1368 PF00580 UvrD/REP helicase N-terminal domain CYB_1371 PF01678 Diaminopimelate epimerase CYB_1372 PF02468 Photosystem II reaction centre N protein (psbN) CYB_1373 PF00737 Photosystem II 10 kDa phosphoprotein CYB_1374 PF07995 Glucose / Sorbosone dehydrogenase CYB_1375 PF16338 Domain of unknown function (DUF4968) CYB_1375 PF13802 Galactose mutarotase-like CYB_1375 PF17137 Domain of unknown function (DUF5110) CYB_1375 PF01055 Glycosyl hydrolases family 31 CYB_1382 PF08245 Mur ligase middle domain CYB_1382 PF02875 Mur ligase family, glutamate ligase domain CYB_1383 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYB_1383 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYB_1383 PF01842 ACT domain CYB_1384 PF00871 Acetokinase family CYB_1390 PF08544 GHMP kinases C terminal CYB_1390 PF00288 GHMP kinases N terminal domain CYB_1391 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYB_1391 PF00289 Biotin carboxylase, N-terminal domain CYB_1391 PF02785 Biotin carboxylase C-terminal domain CYB_1392 PF02899 Phage integrase, N-terminal SAM-like domain CYB_1392 PF00589 Phage integrase family CYB_1394 PF00226 DnaJ domain CYB_1394 PF00684 DnaJ central domain CYB_1394 PF01556 DnaJ C terminal domain CYB_1396 PF00005 ABC transporter CYB_1400 PF06055 Exopolysaccharide synthesis, ExoD CYB_1402 PF01458 Uncharacterized protein family (UPF0051) CYB_1403 PF00005 ABC transporter CYB_1404 PF01741 Large-conductance mechanosensitive channel, MscL CYB_1405 PF01458 Uncharacterized protein family (UPF0051) CYB_1407 PF00793 DAHP synthetase I family CYB_1410 PF00672 HAMP domain CYB_1410 PF18698 Histidine kinase sensor domain CYB_1410 PF00512 His Kinase A (phospho-acceptor) domain CYB_1410 PF00989 PAS fold CYB_1410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1414 PF00795 Carbon-nitrogen hydrolase CYB_1416 PF12697 Alpha/beta hydrolase family CYB_1419 PF00202 Aminotransferase class-III CYB_1420 PF02633 Creatinine amidohydrolase CYB_1421 PF00155 Aminotransferase class I and II CYB_1423 PF11805 Protein of unknown function (DUF3326) CYB_1425 PF00742 Homoserine dehydrogenase CYB_1425 PF03447 Homoserine dehydrogenase, NAD binding domain CYB_1425 PF01842 ACT domain CYB_1427 PF01975 Survival protein SurE CYB_1429 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYB_1429 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYB_1430 PF07690 Major Facilitator Superfamily CYB_1431 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CYB_1431 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CYB_1434 PF00210 Ferritin-like domain CYB_1435 PF00535 Glycosyl transferase family 2 CYB_1436 PF03193 RsgA GTPase CYB_1437 PF01430 Hsp33 protein CYB_1438 PF00502 Phycobilisome protein CYB_1439 PF00502 Phycobilisome protein CYB_1440 PF01383 CpcD/allophycocyanin linker domain CYB_1441 PF00005 ABC transporter CYB_1443 PF00797 N-acetyltransferase CYB_1444 PF02597 ThiS family CYB_1445 PF00575 S1 RNA binding domain CYB_1445 PF01138 3' exoribonuclease family, domain 1 CYB_1445 PF03725 3' exoribonuclease family, domain 2 CYB_1445 PF00013 KH domain CYB_1445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CYB_1449 PF12697 Alpha/beta hydrolase family CYB_1452 PF03358 NADPH-dependent FMN reductase CYB_1454 PF02361 Cobalt transport protein CYB_1458 PF04542 Sigma-70 region 2 CYB_1458 PF08281 Sigma-70, region 4 CYB_1461 PF11378 Protein of unknown function (DUF3181) CYB_1463 PF02392 Ycf4 CYB_1464 PF13416 Bacterial extracellular solute-binding protein CYB_1467 PF00005 ABC transporter CYB_1468 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1469 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1471 PF00361 Proton-conducting membrane transporter CYB_1472 PF00741 Gas vesicle protein CYB_1472 PF05121 Gas vesicle protein K CYB_1473 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYB_1477 PF03979 Sigma-70 factor, region 1.1 CYB_1477 PF00140 Sigma-70 factor, region 1.2 CYB_1477 PF04542 Sigma-70 region 2 CYB_1477 PF04539 Sigma-70 region 3 CYB_1477 PF04545 Sigma-70, region 4 CYB_1478 PF00117 Glutamine amidotransferase class-I CYB_1478 PF06418 CTP synthase N-terminus CYB_1480 PF00248 Aldo/keto reductase family CYB_1481 PF00403 Heavy-metal-associated domain CYB_1485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1487 PF00156 Phosphoribosyl transferase domain CYB_1490 PF02446 4-alpha-glucanotransferase CYB_1492 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYB_1492 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYB_1492 PF03129 Anticodon binding domain CYB_1493 PF02541 Ppx/GppA phosphatase family CYB_1495 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit CYB_1495 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits CYB_1496 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits CYB_1497 PF02419 PsbL protein CYB_1498 PF01788 PsbJ CYB_1499 PF02605 Photosystem I reaction centre subunit XI CYB_1503 PF00012 Hsp70 protein CYB_1508 PF00291 Pyridoxal-phosphate dependent enzyme CYB_1510 PF03309 Type III pantothenate kinase CYB_1511 PF01264 Chorismate synthase CYB_1512 PF06745 KaiC CYB_1512 PF18073 Rubredoxin metal binding domain CYB_1514 PF00152 tRNA synthetases class II (D, K and N) CYB_1514 PF01336 OB-fold nucleic acid binding domain CYB_1515 PF00805 Pentapeptide repeats (8 copies) CYB_1515 PF00069 Protein kinase domain CYB_1516 PF04234 CopC domain CYB_1519 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CYB_1520 PF08275 DNA primase catalytic core, N-terminal domain CYB_1520 PF01807 CHC2 zinc finger CYB_1520 PF10410 DnaB-helicase binding domain of primase CYB_1521 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYB_1521 PF01411 tRNA synthetases class II (A) CYB_1521 PF02272 DHHA1 domain CYB_1522 PF00069 Protein kinase domain CYB_1522 PF00805 Pentapeptide repeats (8 copies) CYB_1530 PF01695 IstB-like ATP binding protein CYB_1534 PF00318 Ribosomal protein S2 CYB_1535 PF00889 Elongation factor TS CYB_1536 PF01979 Amidohydrolase family CYB_1537 PF08331 Domain of unknown function (DUF1730) CYB_1539 PF00712 DNA polymerase III beta subunit, N-terminal domain CYB_1539 PF02768 DNA polymerase III beta subunit, C-terminal domain CYB_1539 PF02767 DNA polymerase III beta subunit, central domain CYB_1543 PF02824 TGS domain CYB_1543 PF13291 ACT domain CYB_1543 PF04607 Region found in RelA / SpoT proteins CYB_1545 PF02887 Pyruvate kinase, alpha/beta domain CYB_1545 PF00224 Pyruvate kinase, barrel domain CYB_1545 PF00391 PEP-utilising enzyme, mobile domain CYB_1548 PF06386 Gas vesicle synthesis protein GvpL/GvpF CYB_1549 PF00483 Nucleotidyl transferase CYB_1550 PF01634 ATP phosphoribosyltransferase CYB_1551 PF01716 Manganese-stabilising protein / photosystem II polypeptide CYB_1554 PF01266 FAD dependent oxidoreductase CYB_1555 PF00005 ABC transporter CYB_1555 PF02687 FtsX-like permease family CYB_1555 PF12704 MacB-like periplasmic core domain CYB_1556 PF01370 NAD dependent epimerase/dehydratase family CYB_1559 PF01225 Mur ligase family, catalytic domain CYB_1559 PF02875 Mur ligase family, glutamate ligase domain CYB_1559 PF08245 Mur ligase middle domain CYB_1560 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CYB_1560 PF01565 FAD binding domain CYB_1565 PF02535 ZIP Zinc transporter CYB_1567 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_1568 PF02774 Semialdehyde dehydrogenase, dimerisation domain CYB_1568 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYB_1570 PF01761 3-dehydroquinate synthase CYB_1577 PF00444 Ribosomal protein L36 CYB_1578 PF00416 Ribosomal protein S13/S18 CYB_1579 PF00411 Ribosomal protein S11 CYB_1580 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CYB_1580 PF01000 RNA polymerase Rpb3/RpoA insert domain CYB_1580 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CYB_1581 PF01196 Ribosomal protein L17 CYB_1582 PF01416 tRNA pseudouridine synthase CYB_1583 PF00572 Ribosomal protein L13 CYB_1584 PF00380 Ribosomal protein S9/S16 CYB_1585 PF01197 Ribosomal protein L31 CYB_1586 PF00472 RF-1 domain CYB_1586 PF03462 PCRF domain CYB_1587 PF00330 Aconitase family (aconitate hydratase) CYB_1587 PF11791 Aconitate B N-terminal domain CYB_1587 PF06434 Aconitate hydratase 2 N-terminus CYB_1589 PF00011 Hsp20/alpha crystallin family CYB_1590 PF00005 ABC transporter CYB_1590 PF03459 TOBE domain CYB_1590 PF17912 MalK OB fold domain CYB_1598 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_1605 PF01425 Amidase CYB_1606 PF03912 Psb28 protein CYB_1607 PF02595 Glycerate kinase family CYB_1609 PF03989 DNA gyrase C-terminal domain, beta-propeller CYB_1609 PF00521 DNA gyrase/topoisomerase IV, subunit A CYB_1611 PF00916 Sulfate permease family CYB_1611 PF01740 STAS domain CYB_1613 PF00395 S-layer homology domain CYB_1613 PF04966 Carbohydrate-selective porin, OprB family CYB_1616 PF00478 IMP dehydrogenase / GMP reductase domain CYB_1618 PF00118 TCP-1/cpn60 chaperonin family CYB_1619 PF00166 Chaperonin 10 Kd subunit CYB_1620 PF02567 Phenazine biosynthesis-like protein CYB_1621 PF01333 Apocytochrome F, C-terminal CYB_1621 PF16639 Apocytochrome F, N-terminal CYB_1622 PF00355 Rieske [2Fe-2S] domain CYB_1626 PF09367 CpeS-like protein CYB_1628 PF03572 Peptidase family S41 CYB_1628 PF00595 PDZ domain CYB_1629 PF00033 Cytochrome b/b6/petB CYB_1630 PF00032 Cytochrome b(C-terminal)/b6/petD CYB_1631 PF00180 Isocitrate/isopropylmalate dehydrogenase CYB_1632 PF01207 Dihydrouridine synthase (Dus) CYB_1633 PF01084 Ribosomal protein S18 CYB_1634 PF00471 Ribosomal protein L33 CYB_1636 PF12706 Beta-lactamase superfamily domain CYB_1638 PF01521 Iron-sulphur cluster biosynthesis CYB_1639 PF00486 Transcriptional regulatory protein, C terminal CYB_1639 PF00072 Response regulator receiver domain CYB_1640 PF01627 Hpt domain CYB_1640 PF00672 HAMP domain CYB_1640 PF00512 His Kinase A (phospho-acceptor) domain CYB_1640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1640 PF00072 Response regulator receiver domain CYB_1640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CYB_1641 PF00690 Cation transporter/ATPase, N-terminus CYB_1641 PF00689 Cation transporting ATPase, C-terminus CYB_1644 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CYB_1644 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CYB_1645 PF02457 DisA bacterial checkpoint controller nucleotide-binding CYB_1648 PF00266 Aminotransferase class-V CYB_1649 PF01098 Cell cycle protein CYB_1651 PF00005 ABC transporter CYB_1652 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CYB_1652 PF14572 Phosphoribosyl synthetase-associated domain CYB_1653 PF00563 EAL domain CYB_1653 PF00990 Diguanylate cyclase, GGDEF domain CYB_1653 PF05231 MASE1 CYB_1653 PF13426 PAS domain CYB_1653 PF08448 PAS fold CYB_1653 PF08447 PAS fold CYB_1654 PF00072 Response regulator receiver domain CYB_1655 PF03330 Lytic transglycolase CYB_1656 PF00586 AIR synthase related protein, N-terminal domain CYB_1656 PF02769 AIR synthase related protein, C-terminal domain CYB_1657 PF00005 ABC transporter CYB_1661 PF00582 Universal stress protein family CYB_1662 PF00246 Zinc carboxypeptidase CYB_1664 PF01250 Ribosomal protein S6 CYB_1665 PF00550 Phosphopantetheine attachment site CYB_1666 PF00109 Beta-ketoacyl synthase, N-terminal domain CYB_1666 PF02801 Beta-ketoacyl synthase, C-terminal domain CYB_1668 PF02547 Queuosine biosynthesis protein CYB_1670 PF00692 dUTPase CYB_1673 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_1677 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYB_1678 PF18324 Hypothetical protein TT1725 CYB_1678 PF00180 Isocitrate/isopropylmalate dehydrogenase CYB_1680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CYB_1683 PF00919 Uncharacterized protein family UPF0004 CYB_1683 PF04055 Radical SAM superfamily CYB_1683 PF01938 TRAM domain CYB_1685 PF01435 Peptidase family M48 CYB_1687 PF00696 Amino acid kinase family CYB_1689 PF00664 ABC transporter transmembrane region CYB_1689 PF00005 ABC transporter CYB_1691 PF00004 ATPase family associated with various cellular activities (AAA) CYB_1691 PF01434 Peptidase family M41 CYB_1691 PF17862 AAA+ lid domain CYB_1693 PF00162 Phosphoglycerate kinase CYB_1694 PF01593 Flavin containing amine oxidoreductase CYB_1696 PF00271 Helicase conserved C-terminal domain CYB_1696 PF09369 Domain of unknown function (DUF1998) CYB_1696 PF00270 DEAD/DEAH box helicase CYB_1699 PF09957 Bacterial antitoxin of type II TA system, VapB CYB_1700 PF12161 HsdM N-terminal domain CYB_1700 PF02384 N-6 DNA Methylase CYB_1701 PF18337 RapA N-terminal Tudor like domain CYB_1701 PF18339 RapA N-terminal Tudor like domain 1 CYB_1701 PF00271 Helicase conserved C-terminal domain CYB_1701 PF12137 RNA polymerase recycling family C-terminal CYB_1701 PF00176 SNF2 family N-terminal domain CYB_1704 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYB_1704 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYB_1709 PF00583 Acetyltransferase (GNAT) family CYB_1710 PF01266 FAD dependent oxidoreductase CYB_1711 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) CYB_1712 PF00118 TCP-1/cpn60 chaperonin family CYB_1713 PF14251 Domain of unknown function (DUF4346) CYB_1727 PF00176 SNF2 family N-terminal domain CYB_1727 PF00271 Helicase conserved C-terminal domain CYB_1729 PF05685 Putative restriction endonuclease CYB_1734 PF00534 Glycosyl transferases group 1 CYB_1734 PF08323 Starch synthase catalytic domain CYB_1736 PF00124 Photosynthetic reaction centre protein CYB_1737 PF01202 Shikimate kinase CYB_1738 PF00677 Lumazine binding domain CYB_1739 PF00005 ABC transporter CYB_1739 PF16326 ABC transporter C-terminal domain CYB_1739 PF12848 ABC transporter CYB_1740 PF00072 Response regulator receiver domain CYB_1741 PF01138 3' exoribonuclease family, domain 1 CYB_1741 PF03725 3' exoribonuclease family, domain 2 CYB_1744 PF00491 Arginase family CYB_1746 PF01168 Alanine racemase, N-terminal domain CYB_1747 PF04472 Cell division protein SepF CYB_1748 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYB_1749 PF14748 Pyrroline-5-carboxylate reductase dimerisation CYB_1749 PF03807 NADP oxidoreductase coenzyme F420-dependent CYB_1750 PF03652 Holliday junction resolvase CYB_1751 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CYB_1751 PF05221 S-adenosyl-L-homocysteine hydrolase CYB_1752 PF00764 Arginosuccinate synthase CYB_1756 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_1757 PF02355 Protein export membrane protein CYB_1757 PF07549 SecD/SecF GG Motif CYB_1758 PF02355 Protein export membrane protein CYB_1758 PF07549 SecD/SecF GG Motif CYB_1761 PF01494 FAD binding domain CYB_1764 PF11283 Protein of unknown function (DUF3084) CYB_1765 PF02779 Transketolase, pyrimidine binding domain CYB_1765 PF02780 Transketolase, C-terminal domain CYB_1765 PF00364 Biotin-requiring enzyme CYB_1766 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CYB_1772 PF01613 Flavin reductase like domain CYB_1772 PF00258 Flavodoxin CYB_1773 PF00360 Phytochrome region CYB_1773 PF00563 EAL domain CYB_1773 PF01590 GAF domain CYB_1773 PF00990 Diguanylate cyclase, GGDEF domain CYB_1779 PF00106 short chain dehydrogenase CYB_1782 PF00398 Ribosomal RNA adenine dimethylase CYB_1783 PF02397 Bacterial sugar transferase CYB_1784 PF01259 SAICAR synthetase CYB_1786 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CYB_1786 PF03900 Porphobilinogen deaminase, C-terminal domain CYB_1789 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CYB_1789 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CYB_1790 PF02403 Seryl-tRNA synthetase N-terminal domain CYB_1790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYB_1794 PF00101 Ribulose bisphosphate carboxylase, small chain CYB_1795 PF03319 Ethanolamine utilisation protein EutN/carboxysome CYB_1796 PF00936 BMC domain CYB_1798 PF00005 ABC transporter CYB_1800 PF11910 Cyanobacterial and plant NDH-1 subunit O CYB_1803 PF00127 Copper binding proteins, plastocyanin/azurin family CYB_1806 PF02254 TrkA-N domain CYB_1806 PF07885 Ion channel CYB_1808 PF00266 Aminotransferase class-V CYB_1811 PF00361 Proton-conducting membrane transporter CYB_1812 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYB_1812 PF00361 Proton-conducting membrane transporter CYB_1812 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CYB_1815 PF17792 ThiD2 family CYB_1815 PF02581 Thiamine monophosphate synthase CYB_1816 PF17862 AAA+ lid domain CYB_1816 PF00004 ATPase family associated with various cellular activities (AAA) CYB_1816 PF01434 Peptidase family M41 CYB_1817 PF00684 DnaJ central domain CYB_1817 PF00226 DnaJ domain CYB_1817 PF01556 DnaJ C terminal domain CYB_1818 PF00883 Cytosol aminopeptidase family, catalytic domain CYB_1818 PF02789 Cytosol aminopeptidase family, N-terminal domain CYB_1819 PF08495 FIST N domain CYB_1819 PF10442 FIST C domain CYB_1820 PF01551 Peptidase family M23 CYB_1821 PF01406 tRNA synthetases class I (C) catalytic domain CYB_1821 PF09190 DALR domain CYB_1823 PF10150 Ribonuclease E/G family CYB_1824 PF01351 Ribonuclease HII CYB_1827 PF00174 Oxidoreductase molybdopterin binding domain CYB_1829 PF00741 Gas vesicle protein CYB_1830 PF07728 AAA domain (dynein-related subfamily) CYB_1833 PF00741 Gas vesicle protein CYB_1839 PF07736 Chorismate mutase type I CYB_1842 PF00311 Phosphoenolpyruvate carboxylase CYB_1847 PF01872 RibD C-terminal domain CYB_1847 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYB_1856 PF13369 Transglutaminase-like superfamily CYB_1859 PF00348 Polyprenyl synthetase CYB_1861 PF01208 Uroporphyrinogen decarboxylase (URO-D) CYB_1862 PF00459 Inositol monophosphatase family CYB_1863 PF00535 Glycosyl transferase family 2 CYB_1864 PF00069 Protein kinase domain CYB_1867 PF00586 AIR synthase related protein, N-terminal domain CYB_1867 PF02769 AIR synthase related protein, C-terminal domain CYB_1868 PF08241 Methyltransferase domain CYB_1868 PF12697 Alpha/beta hydrolase family CYB_1871 PF00005 ABC transporter CYB_1871 PF13732 Domain of unknown function (DUF4162) CYB_1875 PF00009 Elongation factor Tu GTP binding domain CYB_1875 PF16658 Class II release factor RF3, C-terminal domain CYB_1877 PF13614 AAA domain CYB_1878 PF00155 Aminotransferase class I and II CYB_1880 PF02687 FtsX-like permease family CYB_1880 PF18075 FtsX extracellular domain CYB_1881 PF00005 ABC transporter CYB_1881 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYB_1883 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1883 PF12911 N-terminal TM domain of oligopeptide transport permease C CYB_1884 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYB_1886 PF08267 Cobalamin-independent synthase, N-terminal domain CYB_1886 PF01717 Cobalamin-independent synthase, Catalytic domain CYB_1887 PF00005 ABC transporter CYB_1893 PF00171 Aldehyde dehydrogenase family CYB_1895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1895 PF00512 His Kinase A (phospho-acceptor) domain CYB_1895 PF07689 KaiB domain CYB_1897 PF01476 LysM domain CYB_1897 PF08525 Opacity-associated protein A N-terminal motif CYB_1897 PF01551 Peptidase family M23 CYB_1898 PF00005 ABC transporter CYB_1900 PF02130 Uncharacterized protein family UPF0054 CYB_1901 PF01219 Prokaryotic diacylglycerol kinase CYB_1902 PF00288 GHMP kinases N terminal domain CYB_1902 PF08544 GHMP kinases C terminal CYB_1903 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CYB_1908 PF00285 Citrate synthase, C-terminal domain CYB_1909 PF03773 Predicted permease CYB_1912 PF00005 ABC transporter CYB_1913 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1914 PF00528 Binding-protein-dependent transport system inner membrane component CYB_1915 PF12849 PBP superfamily domain CYB_1917 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYB_1917 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYB_1918 PF00206 Lyase CYB_1918 PF10397 Adenylosuccinate lyase C-terminus CYB_1921 PF03099 Biotin/lipoate A/B protein ligase family CYB_1922 PF00085 Thioredoxin CYB_1923 PF01740 STAS domain CYB_1923 PF00916 Sulfate permease family CYB_1925 PF00581 Rhodanese-like domain CYB_1925 PF11127 Protein of unknown function (DUF2892) CYB_1927 PF00753 Metallo-beta-lactamase superfamily CYB_1927 PF16123 Hydroxyacylglutathione hydrolase C-terminus CYB_1928 PF01022 Bacterial regulatory protein, arsR family CYB_1929 PF01370 NAD dependent epimerase/dehydratase family CYB_1930 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CYB_1930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CYB_1930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CYB_1931 PF01545 Cation efflux family CYB_1931 PF16916 Dimerisation domain of Zinc Transporter CYB_1934 PF01627 Hpt domain CYB_1934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1934 PF02895 Signal transducing histidine kinase, homodimeric domain CYB_1934 PF09078 CheY binding CYB_1934 PF01584 CheW-like domain CYB_1934 PF01627 Hpt domain CYB_1934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_1934 PF02895 Signal transducing histidine kinase, homodimeric domain CYB_1934 PF09078 CheY binding CYB_1934 PF01584 CheW-like domain CYB_1935 PF01590 GAF domain CYB_1935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CYB_1937 PF00486 Transcriptional regulatory protein, C terminal CYB_1937 PF00072 Response regulator receiver domain CYB_1938 PF00072 Response regulator receiver domain CYB_1939 PF00072 Response regulator receiver domain CYB_1940 PF02325 YGGT family CYB_1941 PF01012 Electron transfer flavoprotein domain CYB_1941 PF00766 Electron transfer flavoprotein FAD-binding domain CYB_1942 PF01012 Electron transfer flavoprotein domain CYB_1944 PF03485 Arginyl tRNA synthetase N terminal domain CYB_1944 PF00750 tRNA synthetases class I (R) CYB_1944 PF05746 DALR anticodon binding domain CYB_1948 PF03466 LysR substrate binding domain CYB_1948 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYB_1949 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CYB_1950 PF03477 ATP cone domain CYB_1958 PF02678 Pirin CYB_1958 PF17954 Quercetinase C-terminal cupin domain CYB_1959 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CYB_1960 PF01790 Prolipoprotein diacylglyceryl transferase CYB_1961 PF00154 recA bacterial DNA recombination protein CYB_1962 PF00588 SpoU rRNA Methylase family CYB_1962 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYB_1963 PF01029 NusB family CYB_1963 PF01189 16S rRNA methyltransferase RsmB/F CYB_1964 PF00977 Histidine biosynthesis protein CYB_1965 PF07687 Peptidase dimerisation domain CYB_1965 PF01546 Peptidase family M20/M25/M40 CYB_1970 PF13476 AAA domain CYB_1972 PF01062 Bestrophin, RFP-TM, chloride channel CYB_1975 PF02416 mttA/Hcf106 family CYB_1977 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYB_1977 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYB_1978 PF00128 Alpha amylase, catalytic domain CYB_1978 PF02806 Alpha amylase, C-terminal all-beta domain CYB_1978 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CYB_1979 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CYB_1980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CYB_1982 PF00291 Pyridoxal-phosphate dependent enzyme CYB_1983 PF02779 Transketolase, pyrimidine binding domain CYB_1983 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CYB_1983 PF02780 Transketolase, C-terminal domain CYB_1985 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CYB_1985 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CYB_1986 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CYB_1987 PF00920 Dehydratase family CYB_1990 PF03702 Anhydro-N-acetylmuramic acid kinase CYB_1991 PF01494 FAD binding domain CYB_1993 PF02911 Formyl transferase, C-terminal domain CYB_1993 PF00551 Formyl transferase CYB_1994 PF04002 RadC-like JAB domain CYB_1995 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CYB_1997 PF00266 Aminotransferase class-V CYB_1999 PF00762 Ferrochelatase CYB_2004 PF00361 Proton-conducting membrane transporter CYB_2005 PF01112 Asparaginase CYB_2008 PF00581 Rhodanese-like domain CYB_2011 PF00005 ABC transporter CYB_2012 PF00005 ABC transporter CYB_2012 PF12399 Branched-chain amino acid ATP-binding cassette transporter CYB_2014 PF02653 Branched-chain amino acid transport system / permease component CYB_2016 PF00326 Prolyl oligopeptidase family CYB_2018 PF02814 UreE urease accessory protein, N-terminal domain CYB_2018 PF05194 UreE urease accessory protein, C-terminal domain CYB_2021 PF00694 Aconitase C-terminal domain CYB_2023 PF18125 RlmM ferredoxin-like domain CYB_2023 PF01728 FtsJ-like methyltransferase CYB_2030 PF00005 ABC transporter CYB_2031 PF00486 Transcriptional regulatory protein, C terminal CYB_2031 PF00072 Response regulator receiver domain CYB_2037 PF00919 Uncharacterized protein family UPF0004 CYB_2037 PF04055 Radical SAM superfamily CYB_2037 PF18693 TRAM domain CYB_2038 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CYB_2039 PF08245 Mur ligase middle domain CYB_2039 PF01225 Mur ligase family, catalytic domain CYB_2039 PF02875 Mur ligase family, glutamate ligase domain CYB_2041 PF02469 Fasciclin domain CYB_2043 PF03575 Peptidase family S51 CYB_2045 PF16582 Middle domain of thiamine pyrophosphate CYB_2045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYB_2045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYB_2047 PF00834 Ribulose-phosphate 3 epimerase family CYB_2051 PF01256 Carbohydrate kinase CYB_2051 PF03853 YjeF-related protein N-terminus CYB_2055 PF02673 Bacitracin resistance protein BacA CYB_2057 PF01737 YCF9 CYB_2060 PF00072 Response regulator receiver domain CYB_2061 PF01209 ubiE/COQ5 methyltransferase family CYB_2064 PF07690 Major Facilitator Superfamily CYB_2065 PF00534 Glycosyl transferases group 1 CYB_2065 PF13439 Glycosyltransferase Family 4 CYB_2066 PF07228 Stage II sporulation protein E (SpoIIE) CYB_2066 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain CYB_2067 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2070 PF00206 Lyase CYB_2070 PF14698 Argininosuccinate lyase C-terminal CYB_2074 PF02597 ThiS family CYB_2075 PF00899 ThiF family CYB_2075 PF00581 Rhodanese-like domain CYB_2077 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CYB_2077 PF00925 GTP cyclohydrolase II CYB_2078 PF00392 Bacterial regulatory proteins, gntR family CYB_2079 PF00005 ABC transporter CYB_2079 PF08402 TOBE domain CYB_2082 PF13090 Polyphosphate kinase C-terminal domain 2 CYB_2082 PF02503 Polyphosphate kinase middle domain CYB_2082 PF17941 Polyphosphate kinase C-terminal domain 1 CYB_2082 PF13089 Polyphosphate kinase N-terminal domain CYB_2084 PF02653 Branched-chain amino acid transport system / permease component CYB_2085 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2088 PF00884 Sulfatase CYB_2088 PF16347 Domain of unknown function (DUF4976) CYB_2092 PF13419 Haloacid dehalogenase-like hydrolase CYB_2096 PF03358 NADPH-dependent FMN reductase CYB_2099 PF01029 NusB family CYB_2100 PF00580 UvrD/REP helicase N-terminal domain CYB_2100 PF13361 UvrD-like helicase C-terminal domain CYB_2104 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYB_2107 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus CYB_2109 PF07478 D-ala D-ala ligase C-terminus CYB_2109 PF01820 D-ala D-ala ligase N-terminus CYB_2110 PF12327 FtsZ family, C-terminal domain CYB_2110 PF00091 Tubulin/FtsZ family, GTPase domain CYB_2112 PF02350 UDP-N-acetylglucosamine 2-epimerase CYB_2114 PF03448 MgtE intracellular N domain CYB_2114 PF01769 Divalent cation transporter CYB_2114 PF00571 CBS domain CYB_2116 PF02308 MgtC family CYB_2118 PF01169 Uncharacterized protein family UPF0016 CYB_2119 PF02021 Uncharacterised protein family UPF0102 CYB_2120 PF05991 YacP-like NYN domain CYB_2123 PF00483 Nucleotidyl transferase CYB_2124 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYB_2125 PF00528 Binding-protein-dependent transport system inner membrane component CYB_2127 PF00890 FAD binding domain CYB_2127 PF02910 Fumarate reductase flavoprotein C-term CYB_2128 PF00202 Aminotransferase class-III CYB_2131 PF13537 Glutamine amidotransferase domain CYB_2131 PF00156 Phosphoribosyl transferase domain CYB_2132 PF01327 Polypeptide deformylase CYB_2140 PF00207 Alpha-2-macroglobulin family CYB_2140 PF07703 Alpha-2-macroglobulin bait region domain CYB_2140 PF01835 MG2 domain CYB_2141 PF00482 Type II secretion system (T2SS), protein F CYB_2142 PF00437 Type II/IV secretion system protein CYB_2143 PF00437 Type II/IV secretion system protein CYB_2144 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYB_2144 PF00205 Thiamine pyrophosphate enzyme, central domain CYB_2144 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYB_2145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CYB_2145 PF13378 Enolase C-terminal domain-like CYB_2149 PF00557 Metallopeptidase family M24 CYB_2150 PF00654 Voltage gated chloride channel CYB_2151 PF00633 Helix-hairpin-helix motif CYB_2151 PF10576 Iron-sulfur binding domain of endonuclease III CYB_2151 PF00730 HhH-GPD superfamily base excision DNA repair protein CYB_2152 PF04101 Glycosyltransferase family 28 C-terminal domain CYB_2152 PF03033 Glycosyltransferase family 28 N-terminal domain CYB_2153 PF14870 Photosynthesis system II assembly factor YCF48 CYB_2155 PF00563 EAL domain CYB_2155 PF00498 FHA domain CYB_2155 PF00990 Diguanylate cyclase, GGDEF domain CYB_2157 PF00121 Triosephosphate isomerase CYB_2158 PF00128 Alpha amylase, catalytic domain CYB_2160 PF01435 Peptidase family M48 CYB_2161 PF00005 ABC transporter CYB_2161 PF00664 ABC transporter transmembrane region CYB_2163 PF00563 EAL domain CYB_2163 PF00990 Diguanylate cyclase, GGDEF domain CYB_2163 PF03707 Bacterial signalling protein N terminal repeat CYB_2165 PF00056 lactate/malate dehydrogenase, NAD binding domain CYB_2165 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CYB_2166 PF02390 Putative methyltransferase CYB_2169 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYB_2170 PF00459 Inositol monophosphatase family CYB_2173 PF07685 CobB/CobQ-like glutamine amidotransferase domain CYB_2173 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CYB_2174 PF01385 Probable transposase CYB_2174 PF12323 Helix-turn-helix domain CYB_2174 PF07282 Putative transposase DNA-binding domain CYB_2175 PF13183 4Fe-4S dicluster domain CYB_2175 PF02754 Cysteine-rich domain CYB_2181 PF00501 AMP-binding enzyme CYB_2183 PF03009 Glycerophosphoryl diester phosphodiesterase family CYB_2186 PF00578 AhpC/TSA family CYB_2189 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYB_2190 PF01740 STAS domain CYB_2193 PF00148 Nitrogenase component 1 type Oxidoreductase CYB_2193 PF08369 Proto-chlorophyllide reductase 57 kD subunit CYB_2194 PF16363 GDP-mannose 4,6 dehydratase CYB_2195 PF03091 CutA1 divalent ion tolerance protein CYB_2196 PF01467 Cytidylyltransferase-like CYB_2199 PF00365 Phosphofructokinase CYB_2200 PF00211 Adenylate and Guanylate cyclase catalytic domain CYB_2202 PF06574 FAD synthetase CYB_2202 PF01687 Riboflavin kinase CYB_2203 PF02391 MoaE protein CYB_2204 PF02654 Cobalamin-5-phosphate synthase CYB_2206 PF04542 Sigma-70 region 2 CYB_2206 PF00140 Sigma-70 factor, region 1.2 CYB_2206 PF04539 Sigma-70 region 3 CYB_2206 PF04545 Sigma-70, region 4 CYB_2208 PF00809 Pterin binding enzyme CYB_2208 PF02607 B12 binding domain CYB_2208 PF02574 Homocysteine S-methyltransferase CYB_2208 PF02965 Vitamin B12 dependent methionine synthase, activation domain CYB_2208 PF02310 B12 binding domain CYB_2209 PF00528 Binding-protein-dependent transport system inner membrane component CYB_2211 PF00502 Phycobilisome protein CYB_2212 PF16198 tRNA pseudouridylate synthase B C-terminal domain CYB_2212 PF09157 Pseudouridine synthase II TruB, C-terminal CYB_2212 PF01509 TruB family pseudouridylate synthase (N terminal domain) CYB_2213 PF00892 EamA-like transporter family CYB_2214 PF00579 tRNA synthetases class I (W and Y) CYB_2216 PF13176 Tetratricopeptide repeat CYB_2216 PF00515 Tetratricopeptide repeat CYB_2217 PF02686 Glu-tRNAGln amidotransferase C subunit CYB_2220 PF13545 Crp-like helix-turn-helix domain CYB_2222 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CYB_2227 PF17764 3′ DNA-binding domain (3′BD) CYB_2227 PF00270 DEAD/DEAH box helicase CYB_2227 PF00271 Helicase conserved C-terminal domain CYB_2227 PF18074 Primosomal protein N C-terminal domain CYB_2227 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CYB_2229 PF08264 Anticodon-binding domain of tRNA CYB_2229 PF09334 tRNA synthetases class I (M) CYB_2234 PF01968 Hydantoinase/oxoprolinase CYB_2234 PF05378 Hydantoinase/oxoprolinase N-terminal region CYB_2237 PF01040 UbiA prenyltransferase family CYB_2241 PF02096 60Kd inner membrane protein CYB_2243 PF00719 Inorganic pyrophosphatase CYB_2245 PF00575 S1 RNA binding domain CYB_2245 PF08529 NusA N-terminal domain CYB_2245 PF13184 NusA-like KH domain CYB_2246 PF02576 RimP N-terminal domain CYB_2246 PF17384 RimP C-terminal SH3 domain CYB_2250 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2251 PF01209 ubiE/COQ5 methyltransferase family CYB_2252 PF00491 Arginase family CYB_2253 PF02531 PsaD CYB_2254 PF10417 C-terminal domain of 1-Cys peroxiredoxin CYB_2254 PF00578 AhpC/TSA family CYB_2257 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CYB_2258 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CYB_2258 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CYB_2258 PF01488 Shikimate / quinate 5-dehydrogenase CYB_2259 PF05969 Photosystem II complex subunit Ycf12 CYB_2263 PF12323 Helix-turn-helix domain CYB_2263 PF01385 Probable transposase CYB_2263 PF07282 Putative transposase DNA-binding domain CYB_2264 PF00582 Universal stress protein family CYB_2266 PF00421 Photosystem II protein CYB_2267 PF00258 Flavodoxin CYB_2268 PF00421 Photosystem II protein CYB_2269 PF09375 Imelysin CYB_2270 PF13640 2OG-Fe(II) oxygenase superfamily CYB_2270 PF18331 PKHD-type hydroxylase C-terminal domain CYB_2273 PF09335 SNARE associated Golgi protein CYB_2274 PF13649 Methyltransferase domain CYB_2277 PF00072 Response regulator receiver domain CYB_2277 PF00990 Diguanylate cyclase, GGDEF domain CYB_2278 PF07884 Vitamin K epoxide reductase family CYB_2279 PF03437 BtpA family CYB_2280 PF01180 Dihydroorotate dehydrogenase CYB_2282 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_2283 PF00483 Nucleotidyl transferase CYB_2283 PF01050 Mannose-6-phosphate isomerase CYB_2284 PF01435 Peptidase family M48 CYB_2285 PF01475 Ferric uptake regulator family CYB_2289 PF01169 Uncharacterized protein family UPF0016 CYB_2290 PF01169 Uncharacterized protein family UPF0016 CYB_2292 PF00696 Amino acid kinase family CYB_2293 PF02618 YceG-like family CYB_2296 PF03466 LysR substrate binding domain CYB_2296 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYB_2297 PF00561 alpha/beta hydrolase fold CYB_2298 PF00291 Pyridoxal-phosphate dependent enzyme CYB_2299 PF00425 chorismate binding enzyme CYB_2300 PF01040 UbiA prenyltransferase family CYB_2304 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYB_2304 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYB_2304 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYB_2304 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYB_2308 PF01192 RNA polymerase Rpb6 CYB_2309 PF00924 Mechanosensitive ion channel CYB_2310 PF01699 Sodium/calcium exchanger protein CYB_2315 PF00291 Pyridoxal-phosphate dependent enzyme CYB_2316 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CYB_2318 PF02548 Ketopantoate hydroxymethyltransferase CYB_2319 PF00561 alpha/beta hydrolase fold CYB_2320 PF02562 PhoH-like protein CYB_2328 PF13932 GidA associated domain CYB_2328 PF01134 Glucose inhibited division protein A CYB_2329 PF00691 OmpA family CYB_2332 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CYB_2333 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CYB_2334 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CYB_2338 PF01915 Glycosyl hydrolase family 3 C-terminal domain CYB_2338 PF00933 Glycosyl hydrolase family 3 N terminal domain CYB_2339 PF00698 Acyl transferase domain CYB_2340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CYB_2340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CYB_2341 PF02504 Fatty acid synthesis protein CYB_2343 PF00218 Indole-3-glycerol phosphate synthase CYB_2344 PF17275 Family of unknown function (DUF5340) CYB_2346 PF00403 Heavy-metal-associated domain CYB_2347 PF01903 CbiX CYB_2350 PF01300 Telomere recombination CYB_2352 PF01018 GTP1/OBG CYB_2352 PF01926 50S ribosome-binding GTPase CYB_2353 PF00575 S1 RNA binding domain CYB_2356 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYB_2356 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYB_2358 PF01131 DNA topoisomerase CYB_2358 PF01751 Toprim domain CYB_2358 PF13368 Topoisomerase C-terminal repeat CYB_2361 PF04055 Radical SAM superfamily CYB_2361 PF13282 Domain of unknown function (DUF4070) CYB_2361 PF02310 B12 binding domain CYB_2362 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CYB_2364 PF00462 Glutaredoxin CYB_2365 PF01758 Sodium Bile acid symporter family CYB_2366 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYB_2368 PF01171 PP-loop family CYB_2369 PF01628 HrcA protein C terminal domain CYB_2369 PF08220 DeoR-like helix-turn-helix domain CYB_2370 PF00547 Urease, gamma subunit CYB_2373 PF00488 MutS domain V CYB_2373 PF01713 Smr domain CYB_2374 PF00037 4Fe-4S binding domain CYB_2374 PF11953 Domain of unknown function (DUF3470) CYB_2375 PF10716 NADH dehydrogenase transmembrane subunit CYB_2383 PF00005 ABC transporter CYB_2384 PF00224 Pyruvate kinase, barrel domain CYB_2384 PF02887 Pyruvate kinase, alpha/beta domain CYB_2391 PF09084 NMT1/THI5 like CYB_2393 PF01266 FAD dependent oxidoreductase CYB_2394 PF02597 ThiS family CYB_2395 PF05690 Thiazole biosynthesis protein ThiG CYB_2396 PF08241 Methyltransferase domain CYB_2399 PF13439 Glycosyltransferase Family 4 CYB_2399 PF00534 Glycosyl transferases group 1 CYB_2400 PF00005 ABC transporter CYB_2402 PF01066 CDP-alcohol phosphatidyltransferase CYB_2403 PF08241 Methyltransferase domain CYB_2404 PF03167 Uracil DNA glycosylase superfamily CYB_2405 PF01523 Putative modulator of DNA gyrase CYB_2407 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2411 PF01523 Putative modulator of DNA gyrase CYB_2416 PF00270 DEAD/DEAH box helicase CYB_2416 PF08148 DSHCT (NUC185) domain CYB_2416 PF00271 Helicase conserved C-terminal domain CYB_2417 PF02885 Glycosyl transferase family, helical bundle domain CYB_2417 PF00117 Glutamine amidotransferase class-I CYB_2417 PF00591 Glycosyl transferase family, a/b domain CYB_2421 PF00989 PAS fold CYB_2421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2421 PF00512 His Kinase A (phospho-acceptor) domain CYB_2421 PF00672 HAMP domain CYB_2424 PF03471 Transporter associated domain CYB_2424 PF00571 CBS domain CYB_2424 PF01595 Cyclin M transmembrane N-terminal domain CYB_2425 PF02569 Pantoate-beta-alanine ligase CYB_2425 PF02224 Cytidylate kinase CYB_2426 PF02529 Cytochrome B6-F complex subunit 5 CYB_2428 PF13193 AMP-binding enzyme C-terminal domain CYB_2428 PF00501 AMP-binding enzyme CYB_2428 PF00550 Phosphopantetheine attachment site CYB_2428 PF00975 Thioesterase domain CYB_2428 PF00668 Condensation domain CYB_2432 PF08546 Ketopantoate reductase PanE/ApbA C terminal CYB_2432 PF02558 Ketopantoate reductase PanE/ApbA CYB_2433 PF00156 Phosphoribosyl transferase domain CYB_2435 PF01126 Heme oxygenase CYB_2436 PF10385 RNA polymerase beta subunit external 1 domain CYB_2436 PF04563 RNA polymerase beta subunit CYB_2436 PF04561 RNA polymerase Rpb2, domain 2 CYB_2436 PF00562 RNA polymerase Rpb2, domain 6 CYB_2436 PF04560 RNA polymerase Rpb2, domain 7 CYB_2436 PF04565 RNA polymerase Rpb2, domain 3 CYB_2437 PF00623 RNA polymerase Rpb1, domain 2 CYB_2437 PF04983 RNA polymerase Rpb1, domain 3 CYB_2437 PF04997 RNA polymerase Rpb1, domain 1 CYB_2438 PF04983 RNA polymerase Rpb1, domain 3 CYB_2438 PF05000 RNA polymerase Rpb1, domain 4 CYB_2438 PF04998 RNA polymerase Rpb1, domain 5 CYB_2439 PF03070 TENA/THI-4/PQQC family CYB_2439 PF02581 Thiamine monophosphate synthase CYB_2439 PF08543 Phosphomethylpyrimidine kinase CYB_2440 PF03167 Uracil DNA glycosylase superfamily CYB_2442 PF11266 Long-chain fatty aldehyde decarbonylase CYB_2446 PF00005 ABC transporter CYB_2447 PF00551 Formyl transferase CYB_2447 PF01842 ACT domain CYB_2449 PF02416 mttA/Hcf106 family CYB_2451 PF07517 SecA DEAD-like domain CYB_2451 PF07516 SecA Wing and Scaffold domain CYB_2451 PF01043 SecA preprotein cross-linking domain CYB_2452 PF08338 Domain of unknown function (DUF1731) CYB_2452 PF01370 NAD dependent epimerase/dehydratase family CYB_2456 PF00490 Delta-aminolevulinic acid dehydratase CYB_2458 PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) CYB_2461 PF00578 AhpC/TSA family CYB_2462 PF00459 Inositol monophosphatase family CYB_2464 PF01026 TatD related DNase CYB_2465 PF00563 EAL domain CYB_2465 PF01590 GAF domain CYB_2465 PF00990 Diguanylate cyclase, GGDEF domain CYB_2465 PF00360 Phytochrome region CYB_2471 PF13426 PAS domain CYB_2471 PF00672 HAMP domain CYB_2471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2471 PF00512 His Kinase A (phospho-acceptor) domain CYB_2474 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2477 PF13416 Bacterial extracellular solute-binding protein CYB_2478 PF00528 Binding-protein-dependent transport system inner membrane component CYB_2480 PF02910 Fumarate reductase flavoprotein C-term CYB_2480 PF00890 FAD binding domain CYB_2481 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CYB_2481 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CYB_2482 PF02445 Quinolinate synthetase A protein CYB_2483 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CYB_2483 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CYB_2489 PF04539 Sigma-70 region 3 CYB_2489 PF04545 Sigma-70, region 4 CYB_2489 PF04542 Sigma-70 region 2 CYB_2493 PF04085 rod shape-determining protein MreC CYB_2496 PF00037 4Fe-4S binding domain CYB_2498 PF03186 CobD/Cbib protein CYB_2499 PF02082 Transcriptional regulator CYB_2500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYB_2501 PF00072 Response regulator receiver domain CYB_2501 PF00486 Transcriptional regulatory protein, C terminal CYB_2502 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYB_2502 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYB_2505 PF02405 Permease MlaE CYB_2506 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYB_2507 PF13183 4Fe-4S dicluster domain CYB_2507 PF13085 2Fe-2S iron-sulfur cluster binding domain CYB_2511 PF01479 S4 domain CYB_2511 PF00579 tRNA synthetases class I (W and Y) CYB_2512 PF00905 Penicillin binding protein transpeptidase domain CYB_2512 PF00912 Transglycosylase CYB_2514 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CYB_2514 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CYB_2515 PF00069 Protein kinase domain CYB_2516 PF00999 Sodium/hydrogen exchanger family CYB_2516 PF00582 Universal stress protein family CYB_2517 PF05746 DALR anticodon binding domain CYB_2517 PF02092 Glycyl-tRNA synthetase beta subunit CYB_2522 PF01979 Amidohydrolase family CYB_2524 PF02861 Clp amino terminal domain, pathogenicity island component CYB_2524 PF17871 AAA lid domain CYB_2524 PF10431 C-terminal, D2-small domain, of ClpB protein CYB_2524 PF00004 ATPase family associated with various cellular activities (AAA) CYB_2524 PF07724 AAA domain (Cdc48 subfamily) CYB_2525 PF00575 S1 RNA binding domain CYB_2525 PF08206 Ribonuclease B OB domain CYB_2525 PF17876 Cold shock domain CYB_2525 PF00773 RNB domain CYB_2526 PF01895 PhoU domain CYB_2529 PF11941 Domain of unknown function (DUF3459) CYB_2529 PF00128 Alpha amylase, catalytic domain CYB_2531 PF00113 Enolase, C-terminal TIM barrel domain CYB_2531 PF03952 Enolase, N-terminal domain CYB_2532 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CYB_2532 PF00326 Prolyl oligopeptidase family CYB_2537 PF14495 Cytochrome c-550 domain CYB_2539 PF14495 Cytochrome c-550 domain CYB_2541 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CYB_2541 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CYB_2542 PF06838 Methionine gamma-lyase CYB_2545 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CYB_2548 PF01960 ArgJ family CYB_2549 PF00005 ABC transporter CYB_2550 PF00528 Binding-protein-dependent transport system inner membrane component CYB_2552 PF00773 RNB domain CYB_2553 PF00486 Transcriptional regulatory protein, C terminal CYB_2553 PF00072 Response regulator receiver domain CYB_2555 PF03466 LysR substrate binding domain CYB_2555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYB_2558 PF01791 DeoC/LacD family aldolase CYB_2559 PF11967 Recombination protein O N terminal CYB_2559 PF02565 Recombination protein O C terminal CYB_2561 PF00486 Transcriptional regulatory protein, C terminal CYB_2561 PF00072 Response regulator receiver domain CYB_2567 PF02277 Phosphoribosyltransferase CYB_2568 PF02617 ATP-dependent Clp protease adaptor protein ClpS CYB_2570 PF01475 Ferric uptake regulator family CYB_2572 PF00226 DnaJ domain CYB_2572 PF01556 DnaJ C terminal domain CYB_2572 PF00684 DnaJ central domain CYB_2574 PF04055 Radical SAM superfamily CYB_2574 PF01938 TRAM domain CYB_2574 PF00919 Uncharacterized protein family UPF0004 CYB_2575 PF03793 PASTA domain CYB_2575 PF00069 Protein kinase domain CYB_2576 PF01940 Integral membrane protein DUF92 CYB_2577 PF00101 Ribulose bisphosphate carboxylase, small chain CYB_2579 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CYB_2579 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CYB_2581 PF00574 Clp protease CYB_2586 PF07685 CobB/CobQ-like glutamine amidotransferase domain CYB_2586 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CYB_2588 PF12557 Cob(I)alamin adenosyltransferase N terminal CYB_2588 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CYB_2590 PF00438 S-adenosylmethionine synthetase, N-terminal domain CYB_2590 PF02773 S-adenosylmethionine synthetase, C-terminal domain CYB_2590 PF02772 S-adenosylmethionine synthetase, central domain CYB_2592 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2593 PF00994 Probable molybdopterin binding domain CYB_2597 PF00297 Ribosomal protein L3 CYB_2598 PF00573 Ribosomal protein L4/L1 family CYB_2599 PF00276 Ribosomal protein L23 CYB_2600 PF03947 Ribosomal Proteins L2, C-terminal domain CYB_2600 PF00181 Ribosomal Proteins L2, RNA binding domain CYB_2601 PF00203 Ribosomal protein S19 CYB_2602 PF00237 Ribosomal protein L22p/L17e CYB_2603 PF07650 KH domain CYB_2603 PF00189 Ribosomal protein S3, C-terminal domain CYB_2604 PF00252 Ribosomal protein L16p/L10e CYB_2605 PF00831 Ribosomal L29 protein CYB_2606 PF00366 Ribosomal protein S17 CYB_2607 PF00238 Ribosomal protein L14p/L23e CYB_2608 PF00467 KOW motif CYB_2608 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CYB_2609 PF00673 ribosomal L5P family C-terminus CYB_2609 PF00281 Ribosomal protein L5 CYB_2610 PF00410 Ribosomal protein S8 CYB_2611 PF00347 Ribosomal protein L6 CYB_2612 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CYB_2613 PF03719 Ribosomal protein S5, C-terminal domain CYB_2613 PF00333 Ribosomal protein S5, N-terminal domain CYB_2614 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CYB_2615 PF00344 SecY translocase CYB_2617 PF00557 Metallopeptidase family M24 CYB_2618 PF01176 Translation initiation factor 1A / IF-1 CYB_2619 PF12697 Alpha/beta hydrolase family CYB_2622 PF13439 Glycosyltransferase Family 4 CYB_2622 PF00534 Glycosyl transferases group 1 CYB_2627 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N CYB_2628 PF01641 SelR domain CYB_2629 PF03239 Iron permease FTR1 family CYB_2631 PF00005 ABC transporter CYB_2635 PF03479 Plants and Prokaryotes Conserved (PCC) domain CYB_2635 PF12804 MobA-like NTP transferase domain CYB_2635 PF00132 Bacterial transferase hexapeptide (six repeats) CYB_2638 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2640 PF01385 Probable transposase CYB_2640 PF07282 Putative transposase DNA-binding domain CYB_2640 PF12323 Helix-turn-helix domain CYB_2643 PF02401 LytB protein CYB_2647 PF01571 Aminomethyltransferase folate-binding domain CYB_2652 PF00027 Cyclic nucleotide-binding domain CYB_2652 PF13545 Crp-like helix-turn-helix domain CYB_2656 PF00550 Phosphopantetheine attachment site CYB_2656 PF00698 Acyl transferase domain CYB_2656 PF08990 Erythronolide synthase docking CYB_2656 PF09277 Erythronolide synthase, docking CYB_2656 PF16197 Ketoacyl-synthetase C-terminal extension CYB_2656 PF00109 Beta-ketoacyl synthase, N-terminal domain CYB_2656 PF14765 Polyketide synthase dehydratase CYB_2656 PF08240 Alcohol dehydrogenase GroES-like domain CYB_2656 PF02801 Beta-ketoacyl synthase, C-terminal domain CYB_2656 PF08659 KR domain CYB_2659 PF01425 Amidase CYB_2662 PF13340 Putative transposase of IS4/5 family (DUF4096) CYB_2665 PF01039 Carboxyl transferase domain CYB_2665 PF17848 Acetyl-coA carboxylase zinc finger domain CYB_2666 PF01740 STAS domain CYB_2667 PF01209 ubiE/COQ5 methyltransferase family CYB_2669 PF13416 Bacterial extracellular solute-binding protein CYB_2671 PF00528 Binding-protein-dependent transport system inner membrane component CYB_2672 PF00231 ATP synthase CYB_2673 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYB_2673 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYB_2673 PF00306 ATP synthase alpha/beta chain, C terminal domain CYB_2674 PF00213 ATP synthase delta (OSCP) subunit CYB_2675 PF00430 ATP synthase B/B' CF(0) CYB_2677 PF00137 ATP synthase subunit C CYB_2679 PF00119 ATP synthase A chain CYB_2680 PF12966 N-ATPase, AtpR subunit CYB_2684 PF01676 Metalloenzyme superfamily CYB_2684 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CYB_2686 PF00210 Ferritin-like domain CYB_2687 PF12631 MnmE helical domain CYB_2687 PF01926 50S ribosome-binding GTPase CYB_2687 PF10396 GTP-binding protein TrmE N-terminus CYB_2688 PF00343 Carbohydrate phosphorylase CYB_2688 PF11897 Protein of unknown function (DUF3417) CYB_2689 PF00486 Transcriptional regulatory protein, C terminal CYB_2689 PF00072 Response regulator receiver domain CYB_2691 PF01070 FMN-dependent dehydrogenase CYB_2695 PF02913 FAD linked oxidases, C-terminal domain CYB_2695 PF01565 FAD binding domain CYB_2696 PF12323 Helix-turn-helix domain CYB_2696 PF07282 Putative transposase DNA-binding domain CYB_2696 PF01385 Probable transposase CYB_2697 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CYB_2697 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CYB_2698 PF00115 Cytochrome C and Quinol oxidase polypeptide I CYB_2700 PF00510 Cytochrome c oxidase subunit III CYB_2704 PF00543 Nitrogen regulatory protein P-II CYB_2705 PF00909 Ammonium Transporter Family CYB_2706 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CYB_2708 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYB_2712 PF01592 NifU-like N terminal domain CYB_2714 PF01385 Probable transposase CYB_2714 PF07282 Putative transposase DNA-binding domain CYB_2714 PF12323 Helix-turn-helix domain CYB_2715 PF02086 D12 class N6 adenine-specific DNA methyltransferase CYB_2718 PF01078 Magnesium chelatase, subunit ChlI CYB_2718 PF13335 Magnesium chelatase, subunit ChlI C-terminal CYB_2719 PF02463 RecF/RecN/SMC N terminal domain CYB_2722 PF00512 His Kinase A (phospho-acceptor) domain CYB_2722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2723 PF00072 Response regulator receiver domain CYB_2723 PF00486 Transcriptional regulatory protein, C terminal CYB_2727 PF07715 TonB-dependent Receptor Plug Domain CYB_2727 PF00593 TonB dependent receptor CYB_2728 PF00005 ABC transporter CYB_2729 PF01032 FecCD transport family CYB_2731 PF00488 MutS domain V CYB_2731 PF01624 MutS domain I CYB_2731 PF05188 MutS domain II CYB_2731 PF05190 MutS family domain IV CYB_2731 PF05192 MutS domain III CYB_2733 PF03023 Lipid II flippase MurJ CYB_2734 PF04545 Sigma-70, region 4 CYB_2734 PF04542 Sigma-70 region 2 CYB_2734 PF04539 Sigma-70 region 3 CYB_2734 PF00140 Sigma-70 factor, region 1.2 CYB_2736 PF03130 PBS lyase HEAT-like repeat CYB_2737 PF00427 Phycobilisome Linker polypeptide CYB_2737 PF01383 CpcD/allophycocyanin linker domain CYB_2738 PF00502 Phycobilisome protein CYB_2740 PF00502 Phycobilisome protein CYB_2741 PF06206 CpeT/CpcT family (DUF1001) CYB_2747 PF00293 NUDIX domain CYB_2748 PF00072 Response regulator receiver domain CYB_2748 PF14332 Domain of unknown function (DUF4388) CYB_2749 PF00072 Response regulator receiver domain CYB_2751 PF01590 GAF domain CYB_2751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CYB_2752 PF01627 Hpt domain CYB_2752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2752 PF02895 Signal transducing histidine kinase, homodimeric domain CYB_2752 PF02895 Signal transducing histidine kinase, homodimeric domain CYB_2752 PF07194 P2 response regulator binding domain CYB_2752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2752 PF01584 CheW-like domain CYB_2752 PF01627 Hpt domain CYB_2752 PF01584 CheW-like domain CYB_2752 PF07194 P2 response regulator binding domain CYB_2755 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CYB_2757 PF02469 Fasciclin domain CYB_2759 PF10396 GTP-binding protein TrmE N-terminus CYB_2759 PF01926 50S ribosome-binding GTPase CYB_2759 PF12631 MnmE helical domain CYB_2760 PF03209 PUCC protein CYB_2767 PF01888 CbiD CYB_2769 PF01327 Polypeptide deformylase CYB_2771 PF10693 Protein of unknown function (DUF2499) CYB_2774 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CYB_2775 PF12320 Type 5 capsule protein repressor C-terminal domain CYB_2775 PF00149 Calcineurin-like phosphoesterase CYB_2779 PF17810 Arginine decarboxylase helical bundle domain CYB_2779 PF17944 Arginine decarboxylase C-terminal helical extension CYB_2779 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CYB_2780 PF12849 PBP superfamily domain CYB_2781 PF00012 Hsp70 protein CYB_2782 PF01556 DnaJ C terminal domain CYB_2782 PF00226 DnaJ domain CYB_2783 PF00588 SpoU rRNA Methylase family CYB_2785 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CYB_2786 PF07977 FabA-like domain CYB_2791 PF00072 Response regulator receiver domain CYB_2791 PF00512 His Kinase A (phospho-acceptor) domain CYB_2791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2791 PF09456 RcsC Alpha-Beta-Loop (ABL) CYB_2794 PF02728 Copper amine oxidase, N3 domain CYB_2794 PF02727 Copper amine oxidase, N2 domain CYB_2794 PF01179 Copper amine oxidase, enzyme domain CYB_2795 PF00989 PAS fold CYB_2795 PF00512 His Kinase A (phospho-acceptor) domain CYB_2795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYB_2795 PF00672 HAMP domain CYB_2798 PF01649 Ribosomal protein S20 CYB_2799 PF04055 Radical SAM superfamily CYB_2799 PF06463 Molybdenum Cofactor Synthesis C CYB_2801 PF02254 TrkA-N domain CYB_2801 PF02080 TrkA-C domain CYB_2801 PF00999 Sodium/hydrogen exchanger family CYB_2804 PF00120 Glutamine synthetase, catalytic domain CYB_2804 PF03951 Glutamine synthetase, beta-Grasp domain CYB_2806 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYB_2807 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CYB_2807 PF02769 AIR synthase related protein, C-terminal domain CYB_2807 PF00586 AIR synthase related protein, N-terminal domain CYB_2808 PF00270 DEAD/DEAH box helicase CYB_2808 PF00271 Helicase conserved C-terminal domain CYB_2808 PF17191 RecG wedge domain CYB_2809 PF07465 Photosystem I protein M (PsaM) CYB_2810 PF00464 Serine hydroxymethyltransferase CYB_2811 PF00953 Glycosyl transferase family 4 CYB_2813 PF00156 Phosphoribosyl transferase domain CYB_2817 PF02245 Methylpurine-DNA glycosylase (MPG) CYB_2818 PF02597 ThiS family CYB_2819 PF02469 Fasciclin domain CYB_2820 PF00291 Pyridoxal-phosphate dependent enzyme CYB_2822 PF00814 Glycoprotease family CYB_2823 PF01134 Glucose inhibited division protein A CYB_2823 PF13932 GidA associated domain CYB_2824 PF02507 Photosystem I reaction centre subunit III CYB_2825 PF01701 Photosystem I reaction centre subunit IX / PsaJ CYB_2826 PF02605 Photosystem I reaction centre subunit XI CYB_2828 PF00636 Ribonuclease III domain CYB_2829 PF00588 SpoU rRNA Methylase family CYB_2829 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYB_2831 PF00111 2Fe-2S iron-sulfur cluster binding domain CYB_2833 PF08543 Phosphomethylpyrimidine kinase CYB_2837 PF01218 Coproporphyrinogen III oxidase CYB_2841 PF09367 CpeS-like protein CYB_2844 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYB_2845 PF01434 Peptidase family M41 CYB_2845 PF17862 AAA+ lid domain CYB_2845 PF00004 ATPase family associated with various cellular activities (AAA) CYB_2846 PF02913 FAD linked oxidases, C-terminal domain CYB_2846 PF01565 FAD binding domain CYB_2847 PF13847 Methyltransferase domain CYB_2848 PF01632 Ribosomal protein L35 CYB_2849 PF00453 Ribosomal protein L20 CYB_2850 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYB_2851 PF02142 MGS-like domain CYB_2851 PF01808 AICARFT/IMPCHase bienzyme CYB_2852 PF00132 Bacterial transferase hexapeptide (six repeats) CYB_2854 PF01040 UbiA prenyltransferase family CYB_2855 PF13735 tRNA nucleotidyltransferase domain 2 putative CYB_2855 PF01743 Poly A polymerase head domain CYB_2855 PF12627 Probable RNA and SrmB- binding site of polymerase A CYB_2856 PF00486 Transcriptional regulatory protein, C terminal CYB_2856 PF00072 Response regulator receiver domain CYB_2857 PF00762 Ferrochelatase CYB_2860 PF01967 MoaC family CYB_2862 PF14403 Circularly permuted ATP-grasp type 2 CYB_2862 PF04168 A predicted alpha-helical domain with a conserved ER motif. CYB_2863 PF00132 Bacterial transferase hexapeptide (six repeats) CYB_2864 PF14403 Circularly permuted ATP-grasp type 2 CYB_2870 PF00857 Isochorismatase family CYB_2873 PF01329 Pterin 4 alpha carbinolamine dehydratase CYB_2874 PF01370 NAD dependent epimerase/dehydratase family CYB_2874 PF08338 Domain of unknown function (DUF1731) CYB_2875 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CYB_2875 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYB_2875 PF00361 Proton-conducting membrane transporter CYB_2876 PF00361 Proton-conducting membrane transporter CYB_2878 PF02469 Fasciclin domain CYB_2880 PF01523 Putative modulator of DNA gyrase CYB_2881 PF00133 tRNA synthetases class I (I, L, M and V) CYB_2881 PF08264 Anticodon-binding domain of tRNA CYB_2881 PF13603 Leucyl-tRNA synthetase, Domain 2 CYB_2882 PF01383 CpcD/allophycocyanin linker domain CYB_2882 PF00970 Oxidoreductase FAD-binding domain CYB_2882 PF00175 Oxidoreductase NAD-binding domain CYB_2883 PF00485 Phosphoribulokinase / Uridine kinase family CYB_2885 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CYB_2889 PF01245 Ribosomal protein L19 CYB_2890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CYB_2891 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CYB_2892 PF00005 ABC transporter CYB_2892 PF02687 FtsX-like permease family CYB_2892 PF12704 MacB-like periplasmic core domain CYB_2893 PF00528 Binding-protein-dependent transport system inner membrane component CYB_2894 PF02575 YbaB/EbfC DNA-binding family CYB_2895 PF02132 RecR protein CYB_2895 PF13662 Toprim domain CYB_2897 PF01765 Ribosome recycling factor CYB_2898 PF01743 Poly A polymerase head domain CYB_2898 PF01966 HD domain CYB_2898 PF12627 Probable RNA and SrmB- binding site of polymerase A CYB_2901 PF03819 MazG nucleotide pyrophosphohydrolase domain CYB_2904 PF01926 50S ribosome-binding GTPase CYB_2904 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYB_2905 PF04055 Radical SAM superfamily CYB_2909 PF02875 Mur ligase family, glutamate ligase domain CYB_2909 PF08443 RimK-like ATP-grasp domain CYB_2909 PF08245 Mur ligase middle domain CYB_2912 PF01220 Dehydroquinase class II CYB_2913 PF00561 alpha/beta hydrolase fold CYB_2915 PF00085 Thioredoxin CYB_2916 PF03483 B3/4 domain CYB_2916 PF03484 tRNA synthetase B5 domain CYB_2916 PF03147 Ferredoxin-fold anticodon binding domain CYB_2916 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CYB_2916 PF01588 Putative tRNA binding domain CYB_2918 PF10128 Glucose-6-phosphate dehydrogenase subunit CYB_2918 PF01471 Putative peptidoglycan binding domain CYB_2919 PF00342 Phosphoglucose isomerase CYB_2920 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CYB_2922 PF00809 Pterin binding enzyme CYB_2924 PF01926 50S ribosome-binding GTPase CYB_2924 PF06071 Protein of unknown function (DUF933) CYB_2925 PF12323 Helix-turn-helix domain CYB_2925 PF01385 Probable transposase CYB_2925 PF07282 Putative transposase DNA-binding domain CYB_2926 PF00072 Response regulator receiver domain CYB_2926 PF00486 Transcriptional regulatory protein, C terminal CYB_2928 PF00248 Aldo/keto reductase family CYB_2931 PF04286 Protein of unknown function (DUF445) CYB_2932 PF02872 5'-nucleotidase, C-terminal domain CYB_2932 PF00149 Calcineurin-like phosphoesterase CYB_2933 PF01025 GrpE CYB_2934 PF00012 Hsp70 protein CYB_2935 PF00684 DnaJ central domain CYB_2935 PF01556 DnaJ C terminal domain CYB_2935 PF00226 DnaJ domain CYB_2940 PF06470 SMC proteins Flexible Hinge Domain CYB_2940 PF02463 RecF/RecN/SMC N terminal domain CYB_2941 PF00825 Ribonuclease P CYB_2942 PF00468 Ribosomal protein L34