CYB_0001 SM00382 ATPases associated with a variety of cellular activities CYB_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain CYB_0004 SM00382 ATPases associated with a variety of cellular activities CYB_0005 SM00822 CYB_0005 CYB_0008 SM00434 DNA Topoisomerase IV CYB_0009 SM00382 ATPases associated with a variety of cellular activities CYB_0011 SM00062 Bacterial periplasmic substrate-binding proteins CYB_0019 SM00857 Resolvase, N terminal domain CYB_0024 SM00382 ATPases associated with a variety of cellular activities CYB_0025 SM00857 Resolvase, N terminal domain CYB_0028 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_0028 SM00091 PAS domain CYB_0028 SM00387 Histidine kinase-like ATPases CYB_0028 SM00388 His Kinase A (phosphoacceptor) domain CYB_0037 SM00382 ATPases associated with a variety of cellular activities CYB_0038 SM00382 ATPases associated with a variety of cellular activities CYB_0040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CYB_0043 SM01209 CYB_0043 CYB_0043 SM01210 CYB_0043 CYB_0045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_0047 SM00849 Metallo-beta-lactamase superfamily CYB_0048 SM01130 CYB_0048 CYB_0056 SM00072 Guanylate kinase homologues. CYB_0063 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_0064 SM00838 Elongation factor G C-terminus CYB_0079 SM00788 Adenylosuccinate synthetase CYB_0080 SM00245 tail specific protease CYB_0097 SM00855 Phosphoglycerate mutase family CYB_0100 SM00271 DnaJ molecular chaperone homology domain CYB_0107 SM00382 ATPases associated with a variety of cellular activities CYB_0109 SM00318 Staphylococcal nuclease homologues CYB_0126 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CYB_0126 SM00474 3'-5' exonuclease CYB_0126 SM00475 5'-3' exonuclease CYB_0126 SM00482 DNA polymerase A domain CYB_0145 SM00382 ATPases associated with a variety of cellular activities CYB_0146 SM00235 Zinc-dependent metalloprotease CYB_0149 SM00271 DnaJ molecular chaperone homology domain CYB_0151 SM00849 Metallo-beta-lactamase superfamily CYB_0159 SM00382 ATPases associated with a variety of cellular activities CYB_0166 SM00382 ATPases associated with a variety of cellular activities CYB_0167 SM00382 ATPases associated with a variety of cellular activities CYB_0170 SM01094 CpcD/allophycocyanin linker domain CYB_0174 SM00448 cheY-homologous receiver domain CYB_0174 SM00862 Transcriptional regulatory protein, C terminal CYB_0178 SM00028 Tetratricopeptide repeats CYB_0179 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CYB_0181 SM00382 ATPases associated with a variety of cellular activities CYB_0184 SM01387 CYB_0184 CYB_0185 SM00567 E-Z type HEAT repeats CYB_0187 SM00382 ATPases associated with a variety of cellular activities CYB_0189 SM00822 CYB_0189 CYB_0190 SM00382 ATPases associated with a variety of cellular activities CYB_0196 SM00363 S4 RNA-binding domain CYB_0206 SM00852 Probable molybdopterin binding domain CYB_0215 SM00851 MGS-like domain CYB_0215 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYB_0238 SM00382 ATPases associated with a variety of cellular activities CYB_0240 SM00881 CoA binding domain CYB_0248 SM00382 ATPases associated with a variety of cellular activities CYB_0249 SM00448 cheY-homologous receiver domain CYB_0249 SM00862 Transcriptional regulatory protein, C terminal CYB_0262 SM00382 ATPases associated with a variety of cellular activities CYB_0262 SM00962 SRP54-type protein, GTPase domain CYB_0262 SM00963 SRP54-type protein, helical bundle domain CYB_0268 SM00382 ATPases associated with a variety of cellular activities CYB_0270 SM00562 CYB_0270 CYB_0283 SM00448 cheY-homologous receiver domain CYB_0284 SM01211 CYB_0284 CYB_0289 SM00859 Semialdehyde dehydrogenase, NAD binding domain CYB_0302 SM00360 RNA recognition motif CYB_0312 SM00382 ATPases associated with a variety of cellular activities CYB_0312 SM00962 SRP54-type protein, GTPase domain CYB_0312 SM00963 SRP54-type protein, helical bundle domain CYB_0321 SM01207 CYB_0321 CYB_0322 SM00387 Histidine kinase-like ATPases CYB_0322 SM00433 TopoisomeraseII CYB_0324 SM00244 prohibitin homologues CYB_0334 SM00959 Rho termination factor, N-terminal domain CYB_0343 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CYB_0347 SM00240 Forkhead associated domain CYB_0347 SM00267 diguanylate cyclase CYB_0352 SM00448 cheY-homologous receiver domain CYB_0360 SM00646 CYB_0360 CYB_0381 SM00849 Metallo-beta-lactamase superfamily CYB_0381 SM00903 Flavin reductase like domain CYB_0390 SM00382 ATPases associated with a variety of cellular activities CYB_0398 SM00382 ATPases associated with a variety of cellular activities CYB_0402 SM00530 Helix-turn-helix XRE-family like proteins CYB_0404 SM00899 CYB_0404 CYB_0430 SM00028 Tetratricopeptide repeats CYB_0432 SM00382 ATPases associated with a variety of cellular activities CYB_0435 SM00841 Elongation factor P, C-terminal CYB_0435 SM01185 CYB_0435 CYB_0464 SM00855 Phosphoglycerate mutase family CYB_0466 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_0468 SM00028 Tetratricopeptide repeats CYB_0473 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CYB_0481 SM01091 Transporter associated domain CYB_0489 SM01248 CYB_0489 CYB_0490 SM01247 CYB_0490 CYB_0494 SM00464 Found in ATP-dependent protease La (LON) CYB_0507 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_0507 SM00073 Histidine Phosphotransfer domain CYB_0507 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_0507 SM00091 PAS domain CYB_0507 SM00387 Histidine kinase-like ATPases CYB_0507 SM00388 His Kinase A (phosphoacceptor) domain CYB_0507 SM00448 cheY-homologous receiver domain CYB_0513 SM00989 CYB_0513 CYB_0519 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CYB_0522 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_0529 SM01321 CYB_0529 CYB_0552 SM00877 CYB_0552 CYB_0560 SM01234 CYB_0560 CYB_0572 SM00989 CYB_0572 CYB_0576 SM00989 CYB_0576 CYB_0578 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_0580 SM00382 ATPases associated with a variety of cellular activities CYB_0601 SM00382 ATPases associated with a variety of cellular activities CYB_0602 SM00382 ATPases associated with a variety of cellular activities CYB_0607 SM00382 ATPases associated with a variety of cellular activities CYB_0607 SM01086 C-terminal, D2-small domain, of ClpB protein CYB_0613 SM00919 Malic enzyme, NAD binding domain CYB_0613 SM01274 CYB_0613 CYB_0631 SM00382 ATPases associated with a variety of cellular activities CYB_0636 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_0637 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_0651 SM00460 Transglutaminase/protease-like homologues CYB_0655 SM01005 Alanine racemase, C-terminal domain CYB_0663 SM00530 Helix-turn-helix XRE-family like proteins CYB_0669 SM00487 DEAD-like helicases superfamily CYB_0669 SM00490 helicase superfamily c-terminal domain CYB_0676 SM00933 CYB_0676 CYB_0677 SM00642 Alpha-amylase domain CYB_0708 SM00845 GatB domain CYB_0712 SM00387 Histidine kinase-like ATPases CYB_0712 SM00388 His Kinase A (phosphoacceptor) domain CYB_0714 SM00327 von Willebrand factor (vWF) type A domain CYB_0714 SM00382 ATPases associated with a variety of cellular activities CYB_0723 SM00240 Forkhead associated domain CYB_0726 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_0726 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_0729 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CYB_0734 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CYB_0738 SM00382 ATPases associated with a variety of cellular activities CYB_0739 SM00849 Metallo-beta-lactamase superfamily CYB_0745 SM00271 DnaJ molecular chaperone homology domain CYB_0752 SM00478 endonuclease III CYB_0752 SM00525 CYB_0752 CYB_0755 SM00358 Double-stranded RNA binding motif CYB_0755 SM00535 Ribonuclease III family CYB_0762 SM00563 Phosphate acyltransferases CYB_0765 SM00831 Cation transporter/ATPase, N-terminus CYB_0774 SM00382 ATPases associated with a variety of cellular activities CYB_0775 SM00382 ATPases associated with a variety of cellular activities CYB_0797 SM00861 Transketolase, pyrimidine binding domain CYB_0804 SM00411 bacterial (prokaryotic) histone like domain CYB_0807 SM00487 DEAD-like helicases superfamily CYB_0807 SM00490 helicase superfamily c-terminal domain CYB_0822 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_0822 SM00245 tail specific protease CYB_0824 SM00360 RNA recognition motif CYB_0833 SM00880 CYB_0833 CYB_0847 SM00316 Ribosomal protein S1-like RNA-binding domain CYB_0852 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYB_0858 SM00387 Histidine kinase-like ATPases CYB_0858 SM00388 His Kinase A (phosphoacceptor) domain CYB_0859 SM00421 helix_turn_helix, Lux Regulon CYB_0864 SM00450 Rhodanese Homology Domain CYB_0883 SM00419 helix_turn_helix, cAMP Regulatory protein CYB_0885 SM00487 DEAD-like helicases superfamily CYB_0885 SM00490 helicase superfamily c-terminal domain CYB_0890 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_0892 SM00822 CYB_0892 CYB_0894 SM00240 Forkhead associated domain CYB_0896 SM00411 bacterial (prokaryotic) histone like domain CYB_0906 SM00226 Low molecular weight phosphatase family CYB_0914 SM00244 prohibitin homologues CYB_0915 SM00244 prohibitin homologues CYB_0917 SM00448 cheY-homologous receiver domain CYB_0917 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_0920 SM00838 Elongation factor G C-terminus CYB_0920 SM00889 Elongation factor G, domain IV CYB_0922 SM01403 CYB_0922 CYB_0932 SM00062 Bacterial periplasmic substrate-binding proteins CYB_0933 SM00382 ATPases associated with a variety of cellular activities CYB_0941 SM01094 CpcD/allophycocyanin linker domain CYB_0942 SM00567 E-Z type HEAT repeats CYB_0943 SM00567 E-Z type HEAT repeats CYB_0947 SM00331 Sigma factor PP2C-like phosphatases CYB_0947 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CYB_0949 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_0954 SM00507 HNH nucleases CYB_0958 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_0965 SM00388 His Kinase A (phosphoacceptor) domain CYB_0986 SM00650 Ribosomal RNA adenine dimethylases CYB_0987 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_0987 SM00387 Histidine kinase-like ATPases CYB_0987 SM00388 His Kinase A (phosphoacceptor) domain CYB_0988 SM00670 Large family of predicted nucleotide-binding domains CYB_0990 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_0991 SM00478 endonuclease III CYB_0991 SM00525 CYB_0991 CYB_0998 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_1003 SM00387 Histidine kinase-like ATPases CYB_1005 SM01230 CYB_1005 CYB_1008 SM00267 diguanylate cyclase CYB_1008 SM00448 cheY-homologous receiver domain CYB_1020 SM00855 Phosphoglycerate mutase family CYB_1025 SM00450 Rhodanese Homology Domain CYB_1031 SM01001 AIR carboxylase CYB_1043 SM00470 ParB-like nuclease domain CYB_1044 SM00421 helix_turn_helix, Lux Regulon CYB_1044 SM00448 cheY-homologous receiver domain CYB_1056 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_1073 SM00363 S4 RNA-binding domain CYB_1074 SM00382 ATPases associated with a variety of cellular activities CYB_1081 SM00305 Hint (Hedgehog/Intein) domain C-terminal region CYB_1081 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CYB_1081 SM00382 ATPases associated with a variety of cellular activities CYB_1083 SM01001 AIR carboxylase CYB_1086 SM00382 ATPases associated with a variety of cellular activities CYB_1088 SM00422 helix_turn_helix, mercury resistance CYB_1094 SM00363 S4 RNA-binding domain CYB_1094 SM01390 CYB_1094 CYB_1112 SM00054 EF-hand, calcium binding motif CYB_1113 SM00363 S4 RNA-binding domain CYB_1117 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_1119 SM00861 Transketolase, pyrimidine binding domain CYB_1130 SM00448 cheY-homologous receiver domain CYB_1130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_1133 SM00244 prohibitin homologues CYB_1163 SM00382 ATPases associated with a variety of cellular activities CYB_1165 SM00360 RNA recognition motif CYB_1171 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYB_1174 SM00240 Forkhead associated domain CYB_1183 SM00481 DNA polymerase alpha chain like domain CYB_1187 SM00028 Tetratricopeptide repeats CYB_1190 SM00567 E-Z type HEAT repeats CYB_1194 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_1194 SM00320 WD40 repeats CYB_1196 SM00382 ATPases associated with a variety of cellular activities CYB_1197 SM00460 Transglutaminase/protease-like homologues CYB_1198 SM00098 Alkaline phosphatase homologues CYB_1200 SM00347 helix_turn_helix multiple antibiotic resistance protein CYB_1206 SM00382 ATPases associated with a variety of cellular activities CYB_1207 SM00487 DEAD-like helicases superfamily CYB_1207 SM00490 helicase superfamily c-terminal domain CYB_1207 SM00982 CYB_1207 CYB_1207 SM01058 CarD-like/TRCF domain CYB_1220 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CYB_1220 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CYB_1221 SM00649 Ribosomal protein L11/L12 CYB_1230 SM00020 Trypsin-like serine protease CYB_1234 SM00382 ATPases associated with a variety of cellular activities CYB_1236 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CYB_1242 SM00421 helix_turn_helix, Lux Regulon CYB_1242 SM00448 cheY-homologous receiver domain CYB_1244 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CYB_1244 SM01232 CYB_1244 CYB_1249 SM00387 Histidine kinase-like ATPases CYB_1249 SM00388 His Kinase A (phosphoacceptor) domain CYB_1250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_1250 SM00091 PAS domain CYB_1251 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYB_1251 SM00465 GIY-YIG type nucleases (URI domain) CYB_1256 SM00028 Tetratricopeptide repeats CYB_1263 SM00382 ATPases associated with a variety of cellular activities CYB_1284 SM00318 Staphylococcal nuclease homologues CYB_1301 SM00382 ATPases associated with a variety of cellular activities CYB_1304 SM00382 ATPases associated with a variety of cellular activities CYB_1307 SM00917 LeuA allosteric (dimerisation) domain CYB_1316 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYB_1334 SM00382 ATPases associated with a variety of cellular activities CYB_1335 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYB_1335 SM00292 breast cancer carboxy-terminal domain CYB_1335 SM00532 Ligase N family CYB_1336 SM00382 ATPases associated with a variety of cellular activities CYB_1336 SM00994 ClpX C4-type zinc finger CYB_1336 SM01086 C-terminal, D2-small domain, of ClpB protein CYB_1343 SM00421 helix_turn_helix, Lux Regulon CYB_1343 SM00448 cheY-homologous receiver domain CYB_1344 SM00387 Histidine kinase-like ATPases CYB_1344 SM00388 His Kinase A (phosphoacceptor) domain CYB_1345 SM00388 His Kinase A (phosphoacceptor) domain CYB_1354 SM00421 helix_turn_helix, Lux Regulon CYB_1354 SM00448 cheY-homologous receiver domain CYB_1355 SM00710 Parallel beta-helix repeats CYB_1358 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CYB_1358 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CYB_1360 SM00382 ATPases associated with a variety of cellular activities CYB_1361 SM00474 3'-5' exonuclease CYB_1386 SM00240 Forkhead associated domain CYB_1388 SM00240 Forkhead associated domain CYB_1391 SM00878 Biotin carboxylase C-terminal domain CYB_1394 SM00271 DnaJ molecular chaperone homology domain CYB_1403 SM00382 ATPases associated with a variety of cellular activities CYB_1408 SM00905 Dihydroneopterin aldolase CYB_1410 SM00387 Histidine kinase-like ATPases CYB_1410 SM00388 His Kinase A (phosphoacceptor) domain CYB_1412 SM01065 Starch binding domain CYB_1415 SM00507 HNH nucleases CYB_1422 SM00369 Leucine-rich repeats, typical (most populated) subfamily CYB_1429 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYB_1440 SM01094 CpcD/allophycocyanin linker domain CYB_1441 SM00382 ATPases associated with a variety of cellular activities CYB_1442 SM00917 LeuA allosteric (dimerisation) domain CYB_1445 SM00316 Ribosomal protein S1-like RNA-binding domain CYB_1445 SM00322 K homology RNA-binding domain CYB_1446 SM01080 CYB_1446 CYB_1453 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_1457 SM00100 Cyclic nucleotide-monophosphate binding domain CYB_1467 SM00382 ATPases associated with a variety of cellular activities CYB_1484 SM00960 Roadblock/LC7 domain CYB_1492 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYB_1502 SM00563 Phosphate acyltransferases CYB_1512 SM00382 ATPases associated with a variety of cellular activities CYB_1515 SM00028 Tetratricopeptide repeats CYB_1515 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_1520 SM00400 zinc finger CYB_1520 SM00493 CYB_1520 CYB_1521 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYB_1522 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_1530 SM00479 CYB_1530 CYB_1538 SM00382 ATPases associated with a variety of cellular activities CYB_1539 SM00480 DNA polymerase III beta subunit CYB_1543 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYB_1543 SM00954 Region found in RelA / SpoT proteins CYB_1555 SM00382 ATPases associated with a variety of cellular activities CYB_1568 SM00859 Semialdehyde dehydrogenase, NAD binding domain CYB_1571 SM00028 Tetratricopeptide repeats CYB_1580 SM00662 RNA polymerases D CYB_1586 SM00937 CYB_1586 CYB_1590 SM00382 ATPases associated with a variety of cellular activities CYB_1609 SM00434 DNA Topoisomerase IV CYB_1616 SM01240 CYB_1616 CYB_1619 SM00883 Chaperonin 10 Kd subunit CYB_1628 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_1628 SM00245 tail specific protease CYB_1631 SM01329 CYB_1631 CYB_1639 SM00387 Histidine kinase-like ATPases CYB_1639 SM00388 His Kinase A (phosphoacceptor) domain CYB_1639 SM00448 cheY-homologous receiver domain CYB_1640 SM00073 Histidine Phosphotransfer domain CYB_1640 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_1640 SM00091 PAS domain CYB_1640 SM00387 Histidine kinase-like ATPases CYB_1640 SM00388 His Kinase A (phosphoacceptor) domain CYB_1640 SM00448 cheY-homologous receiver domain CYB_1641 SM00831 Cation transporter/ATPase, N-terminus CYB_1651 SM00382 ATPases associated with a variety of cellular activities CYB_1652 SM01400 CYB_1652 CYB_1653 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_1653 SM00091 PAS domain CYB_1653 SM00387 Histidine kinase-like ATPases CYB_1654 SM00448 cheY-homologous receiver domain CYB_1657 SM00382 ATPases associated with a variety of cellular activities CYB_1666 SM00825 Beta-ketoacyl synthase CYB_1678 SM01329 CYB_1678 CYB_1683 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_1689 SM00382 ATPases associated with a variety of cellular activities CYB_1691 SM00382 ATPases associated with a variety of cellular activities CYB_1696 SM00487 DEAD-like helicases superfamily CYB_1696 SM00490 helicase superfamily c-terminal domain CYB_1701 SM00487 DEAD-like helicases superfamily CYB_1701 SM00490 helicase superfamily c-terminal domain CYB_1702 SM00100 Cyclic nucleotide-monophosphate binding domain CYB_1704 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYB_1706 SM00563 Phosphate acyltransferases CYB_1716 SM00028 Tetratricopeptide repeats CYB_1727 SM00487 DEAD-like helicases superfamily CYB_1727 SM00490 helicase superfamily c-terminal domain CYB_1730 SM00567 E-Z type HEAT repeats CYB_1731 SM00028 Tetratricopeptide repeats CYB_1739 SM00382 ATPases associated with a variety of cellular activities CYB_1740 SM00448 cheY-homologous receiver domain CYB_1745 SM00244 prohibitin homologues CYB_1750 SM00732 Likely ribonuclease with RNase H fold. CYB_1751 SM00996 S-adenosyl-L-homocysteine hydrolase CYB_1751 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CYB_1763 SM00732 Likely ribonuclease with RNase H fold. CYB_1765 SM00861 Transketolase, pyrimidine binding domain CYB_1772 SM00849 Metallo-beta-lactamase superfamily CYB_1772 SM00903 Flavin reductase like domain CYB_1773 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_1773 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_1773 SM00091 PAS domain CYB_1773 SM00387 Histidine kinase-like ATPases CYB_1773 SM00388 His Kinase A (phosphoacceptor) domain CYB_1776 SM00093 SERine Proteinase INhibitors CYB_1792 SM00877 CYB_1792 CYB_1794 SM00961 Ribulose bisphosphate carboxylase, small chain CYB_1796 SM00877 CYB_1796 CYB_1797 SM00877 CYB_1797 CYB_1798 SM00382 ATPases associated with a variety of cellular activities CYB_1807 SM00481 DNA polymerase alpha chain like domain CYB_1816 SM00382 ATPases associated with a variety of cellular activities CYB_1817 SM00271 DnaJ molecular chaperone homology domain CYB_1819 SM00897 FIST N domain CYB_1819 SM01204 CYB_1819 CYB_1820 SM00257 Lysin motif CYB_1821 SM00840 CYB_1821 CYB_1822 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_1823 SM00316 Ribosomal protein S1-like RNA-binding domain CYB_1830 SM00382 ATPases associated with a variety of cellular activities CYB_1835 SM00989 CYB_1835 CYB_1838 SM00989 CYB_1838 CYB_1864 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_1871 SM00382 ATPases associated with a variety of cellular activities CYB_1881 SM00382 ATPases associated with a variety of cellular activities CYB_1882 SM00382 ATPases associated with a variety of cellular activities CYB_1887 SM00382 ATPases associated with a variety of cellular activities CYB_1892 SM00363 S4 RNA-binding domain CYB_1895 SM00387 Histidine kinase-like ATPases CYB_1895 SM00388 His Kinase A (phosphoacceptor) domain CYB_1895 SM01248 CYB_1895 CYB_1898 SM00382 ATPases associated with a variety of cellular activities CYB_1904 SM00822 CYB_1904 CYB_1912 SM00382 ATPases associated with a variety of cellular activities CYB_1918 SM00998 Adenylosuccinate lyase C-terminus CYB_1920 SM00028 Tetratricopeptide repeats CYB_1925 SM00450 Rhodanese Homology Domain CYB_1927 SM00849 Metallo-beta-lactamase superfamily CYB_1928 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYB_1930 SM00984 UDP binding domain CYB_1934 SM00073 Histidine Phosphotransfer domain CYB_1934 SM00260 Two component signalling adaptor domain CYB_1934 SM00387 Histidine kinase-like ATPases CYB_1934 SM00448 cheY-homologous receiver domain CYB_1934 SM01231 CYB_1934 CYB_1935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CYB_1935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYB_1936 SM00260 Two component signalling adaptor domain CYB_1937 SM00448 cheY-homologous receiver domain CYB_1938 SM00448 cheY-homologous receiver domain CYB_1939 SM00448 cheY-homologous receiver domain CYB_1941 SM00893 Electron transfer flavoprotein domain CYB_1942 SM00893 Electron transfer flavoprotein domain CYB_1944 SM00836 DALR anticodon binding domain CYB_1944 SM01016 Arginyl tRNA synthetase N terminal dom CYB_1961 SM00382 ATPases associated with a variety of cellular activities CYB_1962 SM00967 RNA 2'-O ribose methyltransferase substrate binding CYB_1969 SM00933 CYB_1969 CYB_1978 SM00642 Alpha-amylase domain CYB_1983 SM00861 Transketolase, pyrimidine binding domain CYB_1984 SM00028 Tetratricopeptide repeats CYB_2001 SM00421 helix_turn_helix, Lux Regulon CYB_2008 SM00450 Rhodanese Homology Domain CYB_2011 SM00382 ATPases associated with a variety of cellular activities CYB_2018 SM00988 UreE urease accessory protein, N-terminal domain CYB_2030 SM00382 ATPases associated with a variety of cellular activities CYB_2031 SM00448 cheY-homologous receiver domain CYB_2031 SM00862 Transcriptional regulatory protein, C terminal CYB_2033 SM00287 Bacterial SH3 domain homologues CYB_2037 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_2041 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYB_2060 SM00448 cheY-homologous receiver domain CYB_2066 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_2066 SM00331 Sigma factor PP2C-like phosphatases CYB_2073 SM00232 JAB/MPN domain CYB_2075 SM00450 Rhodanese Homology Domain CYB_2078 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYB_2079 SM00382 ATPases associated with a variety of cellular activities CYB_2090 SM00822 CYB_2090 CYB_2100 SM00382 ATPases associated with a variety of cellular activities CYB_2106 SM00567 E-Z type HEAT repeats CYB_2110 SM00864 Tubulin/FtsZ family, GTPase domain CYB_2110 SM00865 Tubulin/FtsZ family, C-terminal domain CYB_2114 SM00924 MgtE intracellular N domain CYB_2124 SM00062 Bacterial periplasmic substrate-binding proteins CYB_2140 SM01359 CYB_2140 CYB_2140 SM01360 CYB_2140 CYB_2142 SM00382 ATPases associated with a variety of cellular activities CYB_2143 SM00382 ATPases associated with a variety of cellular activities CYB_2145 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CYB_2150 SM00116 Domain in cystathionine beta-synthase and other proteins. CYB_2151 SM00478 endonuclease III CYB_2151 SM00525 CYB_2151 CYB_2155 SM00240 Forkhead associated domain CYB_2158 SM00642 Alpha-amylase domain CYB_2161 SM00382 ATPases associated with a variety of cellular activities CYB_2163 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_2163 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_2163 SM00091 PAS domain CYB_2163 SM00267 diguanylate cyclase CYB_2168 SM00028 Tetratricopeptide repeats CYB_2168 SM00271 DnaJ molecular chaperone homology domain CYB_2169 SM00062 Bacterial periplasmic substrate-binding proteins CYB_2171 SM00240 Forkhead associated domain CYB_2173 SM00382 ATPases associated with a variety of cellular activities CYB_2176 SM00028 Tetratricopeptide repeats CYB_2200 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CYB_2200 SM00240 Forkhead associated domain CYB_2202 SM00904 Riboflavin kinase CYB_2208 SM01018 B12 binding domain CYB_2216 SM00028 Tetratricopeptide repeats CYB_2220 SM00419 helix_turn_helix, cAMP Regulatory protein CYB_2227 SM00487 DEAD-like helicases superfamily CYB_2227 SM00490 helicase superfamily c-terminal domain CYB_2233 SM00382 ATPases associated with a variety of cellular activities CYB_2236 SM00363 S4 RNA-binding domain CYB_2239 SM00393 Putative single-stranded nucleic acids-binding domain CYB_2244 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_2245 SM00322 K homology RNA-binding domain CYB_2262 SM00852 Probable molybdopterin binding domain CYB_2270 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CYB_2276 SM00853 MutL C terminal dimerisation domain CYB_2276 SM01340 CYB_2276 CYB_2277 SM00267 diguanylate cyclase CYB_2277 SM00448 cheY-homologous receiver domain CYB_2278 SM00756 CYB_2278 CYB_2306 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYB_2317 SM00563 Phosphate acyltransferases CYB_2339 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CYB_2353 SM00316 Ribosomal protein S1-like RNA-binding domain CYB_2356 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYB_2358 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CYB_2358 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CYB_2358 SM00493 CYB_2358 CYB_2361 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_2366 SM00226 Low molecular weight phosphatase family CYB_2367 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CYB_2373 SM00463 Small MutS-related domain CYB_2373 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CYB_2373 SM00534 ATPase domain of DNA mismatch repair MUTS family CYB_2374 SM00930 CYB_2374 CYB_2383 SM00382 ATPases associated with a variety of cellular activities CYB_2400 SM00382 ATPases associated with a variety of cellular activities CYB_2404 SM00986 Uracil DNA glycosylase superfamily CYB_2404 SM00987 UreE urease accessory protein, C-terminal domain CYB_2416 SM00487 DEAD-like helicases superfamily CYB_2416 SM00490 helicase superfamily c-terminal domain CYB_2416 SM01142 CYB_2416 CYB_2419 SM00248 ankyrin repeats CYB_2421 SM00091 PAS domain CYB_2421 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYB_2421 SM00387 Histidine kinase-like ATPases CYB_2421 SM00388 His Kinase A (phosphoacceptor) domain CYB_2424 SM00116 Domain in cystathionine beta-synthase and other proteins. CYB_2427 SM00028 Tetratricopeptide repeats CYB_2427 SM00271 DnaJ molecular chaperone homology domain CYB_2430 SM00248 ankyrin repeats CYB_2437 SM00663 RNA polymerase I subunit A N-terminus CYB_2440 SM00986 Uracil DNA glycosylase superfamily CYB_2440 SM00987 UreE urease accessory protein, C-terminal domain CYB_2451 SM00957 SecA DEAD-like domain CYB_2451 SM00958 SecA preprotein cross-linking domain CYB_2456 SM01004 Delta-aminolevulinic acid dehydratase CYB_2465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_2465 SM00387 Histidine kinase-like ATPases CYB_2465 SM00388 His Kinase A (phosphoacceptor) domain CYB_2471 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_2471 SM00387 Histidine kinase-like ATPases CYB_2471 SM00388 His Kinase A (phosphoacceptor) domain CYB_2481 SM01350 CYB_2481 CYB_2488 SM00028 Tetratricopeptide repeats CYB_2501 SM00448 cheY-homologous receiver domain CYB_2501 SM00862 Transcriptional regulatory protein, C terminal CYB_2502 SM00382 ATPases associated with a variety of cellular activities CYB_2503 SM00909 Sporulation and spore germination CYB_2508 SM00327 von Willebrand factor (vWF) type A domain CYB_2515 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_2520 SM00347 helix_turn_helix multiple antibiotic resistance protein CYB_2524 SM00382 ATPases associated with a variety of cellular activities CYB_2524 SM01086 C-terminal, D2-small domain, of ClpB protein CYB_2525 SM00316 Ribosomal protein S1-like RNA-binding domain CYB_2525 SM00357 Cold shock protein domain CYB_2525 SM00955 CYB_2525 CYB_2529 SM00642 Alpha-amylase domain CYB_2531 SM01192 CYB_2531 CYB_2531 SM01193 CYB_2531 CYB_2533 SM00100 Cyclic nucleotide-monophosphate binding domain CYB_2533 SM00419 helix_turn_helix, cAMP Regulatory protein CYB_2534 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYB_2549 SM00382 ATPases associated with a variety of cellular activities CYB_2552 SM00955 CYB_2552 CYB_2553 SM00421 helix_turn_helix, Lux Regulon CYB_2553 SM00448 cheY-homologous receiver domain CYB_2558 SM01133 CYB_2558 CYB_2560 SM00028 Tetratricopeptide repeats CYB_2561 SM00448 cheY-homologous receiver domain CYB_2561 SM00862 Transcriptional regulatory protein, C terminal CYB_2572 SM00271 DnaJ molecular chaperone homology domain CYB_2574 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_2575 SM00220 Serine/Threonine protein kinases, catalytic domain CYB_2577 SM00961 Ribulose bisphosphate carboxylase, small chain CYB_2593 SM00852 Probable molybdopterin binding domain CYB_2600 SM01382 CYB_2600 CYB_2600 SM01383 CYB_2600 CYB_2603 SM00322 K homology RNA-binding domain CYB_2607 SM01374 CYB_2607 CYB_2608 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CYB_2618 SM00316 Ribosomal protein S1-like RNA-binding domain CYB_2625 SM00382 ATPases associated with a variety of cellular activities CYB_2625 SM00393 Putative single-stranded nucleic acids-binding domain CYB_2630 SM01093 CYB_2630 CYB_2631 SM00382 ATPases associated with a variety of cellular activities CYB_2648 SM00507 HNH nucleases CYB_2652 SM00100 Cyclic nucleotide-monophosphate binding domain CYB_2652 SM00419 helix_turn_helix, cAMP Regulatory protein CYB_2656 SM00829 Enoylreductase CYB_2685 SM00028 Tetratricopeptide repeats CYB_2689 SM00448 cheY-homologous receiver domain CYB_2689 SM00862 Transcriptional regulatory protein, C terminal CYB_2690 SM00028 Tetratricopeptide repeats CYB_2691 SM01240 CYB_2691 CYB_2704 SM00938 Nitrogen regulatory protein P-II CYB_2709 SM00028 Tetratricopeptide repeats CYB_2710 SM00450 Rhodanese Homology Domain CYB_2718 SM00382 ATPases associated with a variety of cellular activities CYB_2722 SM00387 Histidine kinase-like ATPases CYB_2722 SM00388 His Kinase A (phosphoacceptor) domain CYB_2723 SM00448 cheY-homologous receiver domain CYB_2723 SM00862 Transcriptional regulatory protein, C terminal CYB_2728 SM00382 ATPases associated with a variety of cellular activities CYB_2731 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CYB_2731 SM00534 ATPase domain of DNA mismatch repair MUTS family CYB_2736 SM00567 E-Z type HEAT repeats CYB_2737 SM01094 CpcD/allophycocyanin linker domain CYB_2744 SM00950 CYB_2744 CYB_2748 SM00448 cheY-homologous receiver domain CYB_2749 SM00448 cheY-homologous receiver domain CYB_2750 SM00260 Two component signalling adaptor domain CYB_2751 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_2751 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CYB_2752 SM00073 Histidine Phosphotransfer domain CYB_2752 SM00260 Two component signalling adaptor domain CYB_2752 SM00387 Histidine kinase-like ATPases CYB_2752 SM00448 cheY-homologous receiver domain CYB_2756 SM00155 Phospholipase D. Active site motifs. CYB_2756 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYB_2757 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYB_2774 SM00360 RNA recognition motif CYB_2782 SM00271 DnaJ molecular chaperone homology domain CYB_2791 SM00387 Histidine kinase-like ATPases CYB_2791 SM00388 His Kinase A (phosphoacceptor) domain CYB_2795 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYB_2795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYB_2795 SM00091 PAS domain CYB_2795 SM00387 Histidine kinase-like ATPases CYB_2795 SM00388 His Kinase A (phosphoacceptor) domain CYB_2799 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_2804 SM01230 CYB_2804 CYB_2808 SM00487 DEAD-like helicases superfamily CYB_2808 SM00490 helicase superfamily c-terminal domain CYB_2819 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYB_2823 SM01228 CYB_2823 CYB_2828 SM00535 Ribonuclease III family CYB_2829 SM00967 RNA 2'-O ribose methyltransferase substrate binding CYB_2845 SM00382 ATPases associated with a variety of cellular activities CYB_2850 SM00062 Bacterial periplasmic substrate-binding proteins CYB_2851 SM00798 AICARFT/IMPCHase bienzyme CYB_2851 SM00851 MGS-like domain CYB_2856 SM00448 cheY-homologous receiver domain CYB_2856 SM00862 Transcriptional regulatory protein, C terminal CYB_2867 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CYB_2878 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYB_2887 SM00028 Tetratricopeptide repeats CYB_2895 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYB_2895 SM00493 CYB_2895 CYB_2898 SM00116 Domain in cystathionine beta-synthase and other proteins. CYB_2900 SM00460 Transglutaminase/protease-like homologues CYB_2905 SM00729 Elongator protein 3, MiaB family, Radical SAM CYB_2916 SM00873 B3/4 domain CYB_2916 SM00874 tRNA synthetase B5 domain CYB_2916 SM00896 Ferredoxin-fold anticodon binding domain CYB_2921 SM00905 Dihydroneopterin aldolase CYB_2926 SM00331 Sigma factor PP2C-like phosphatases CYB_2926 SM00448 cheY-homologous receiver domain CYB_2935 SM00271 DnaJ molecular chaperone homology domain CYB_2940 SM00968 SMC proteins Flexible Hinge Domain