locus-tag class description CYA_0001 PF08299 Bacterial dnaA protein helix-turn-helix CYA_0001 PF11638 DnaA N-terminal domain CYA_0001 PF00308 Bacterial dnaA protein CYA_0002 PF01209 ubiE/COQ5 methyltransferase family CYA_0004 PF01434 Peptidase family M41 CYA_0004 PF06480 FtsH Extracellular CYA_0004 PF00004 ATPase family associated with various cellular activities (AAA) CYA_0004 PF17862 AAA+ lid domain CYA_0005 PF00106 short chain dehydrogenase CYA_0008 PF00521 DNA gyrase/topoisomerase IV, subunit A CYA_0008 PF03989 DNA gyrase C-terminal domain, beta-propeller CYA_0009 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYA_0009 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYA_0009 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYA_0009 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYA_0011 PF01964 Radical SAM ThiC family CYA_0014 PF16416 ARM-like repeat domain, GUN4-N terminal CYA_0014 PF05419 GUN4-like CYA_0017 PF01975 Survival protein SurE CYA_0019 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CYA_0020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYA_0020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYA_0021 PF02152 Dihydroneopterin aldolase CYA_0022 PF00809 Pterin binding enzyme CYA_0024 PF06071 Protein of unknown function (DUF933) CYA_0024 PF01926 50S ribosome-binding GTPase CYA_0025 PF01938 TRAM domain CYA_0025 PF13847 Methyltransferase domain CYA_0027 PF00111 2Fe-2S iron-sulfur cluster binding domain CYA_0028 PF00483 Nucleotidyl transferase CYA_0028 PF01050 Mannose-6-phosphate isomerase CYA_0029 PF01435 Peptidase family M48 CYA_0030 PF01475 Ferric uptake regulator family CYA_0034 PF01169 Uncharacterized protein family UPF0016 CYA_0035 PF02605 Photosystem I reaction centre subunit XI CYA_0041 PF03209 PUCC protein CYA_0042 PF00069 Protein kinase domain CYA_0043 PF01593 Flavin containing amine oxidoreductase CYA_0051 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0051 PF12911 N-terminal TM domain of oligopeptide transport permease C CYA_0055 PF02769 AIR synthase related protein, C-terminal domain CYA_0055 PF00586 AIR synthase related protein, N-terminal domain CYA_0057 PF07733 Bacterial DNA polymerase III alpha NTPase domain CYA_0057 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CYA_0057 PF14579 Helix-hairpin-helix motif CYA_0057 PF02811 PHP domain CYA_0057 PF01336 OB-fold nucleic acid binding domain CYA_0058 PF00795 Carbon-nitrogen hydrolase CYA_0072 PF01494 FAD binding domain CYA_0074 PF02355 Protein export membrane protein CYA_0074 PF07549 SecD/SecF GG Motif CYA_0075 PF07549 SecD/SecF GG Motif CYA_0075 PF02355 Protein export membrane protein CYA_0077 PF08245 Mur ligase middle domain CYA_0077 PF02875 Mur ligase family, glutamate ligase domain CYA_0077 PF01225 Mur ligase family, catalytic domain CYA_0079 PF02469 Fasciclin domain CYA_0082 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYA_0082 PF16582 Middle domain of thiamine pyrophosphate CYA_0082 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYA_0084 PF00834 Ribulose-phosphate 3 epimerase family CYA_0087 PF02673 Bacitracin resistance protein BacA CYA_0088 PF01256 Carbohydrate kinase CYA_0088 PF03853 YjeF-related protein N-terminus CYA_0090 PF01737 YCF9 CYA_0093 PF00072 Response regulator receiver domain CYA_0094 PF01209 ubiE/COQ5 methyltransferase family CYA_0099 PF00534 Glycosyl transferases group 1 CYA_0099 PF13439 Glycosyltransferase Family 4 CYA_0100 PF07228 Stage II sporulation protein E (SpoIIE) CYA_0100 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain CYA_0103 PF14698 Argininosuccinate lyase C-terminal CYA_0103 PF00206 Lyase CYA_0107 PF02350 UDP-N-acetylglucosamine 2-epimerase CYA_0109 PF12327 FtsZ family, C-terminal domain CYA_0109 PF00091 Tubulin/FtsZ family, GTPase domain CYA_0110 PF01820 D-ala D-ala ligase N-terminus CYA_0110 PF07478 D-ala D-ala ligase C-terminus CYA_0112 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus CYA_0114 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYA_0118 PF01888 CbiD CYA_0120 PF01327 Polypeptide deformylase CYA_0122 PF10693 Protein of unknown function (DUF2499) CYA_0125 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CYA_0126 PF00149 Calcineurin-like phosphoesterase CYA_0126 PF12320 Type 5 capsule protein repressor C-terminal domain CYA_0128 PF17944 Arginine decarboxylase C-terminal helical extension CYA_0128 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CYA_0128 PF17810 Arginine decarboxylase helical bundle domain CYA_0129 PF12849 PBP superfamily domain CYA_0130 PF00012 Hsp70 protein CYA_0131 PF02754 Cysteine-rich domain CYA_0131 PF13183 4Fe-4S dicluster domain CYA_0132 PF01556 DnaJ C terminal domain CYA_0132 PF00226 DnaJ domain CYA_0133 PF00501 AMP-binding enzyme CYA_0135 PF09827 CRISPR associated protein Cas2 CYA_0142 PF00762 Ferrochelatase CYA_0143 PF00585 C-terminal regulatory domain of Threonine dehydratase CYA_0143 PF00291 Pyridoxal-phosphate dependent enzyme CYA_0145 PF12697 Alpha/beta hydrolase family CYA_0146 PF03808 Glycosyl transferase WecB/TagA/CpsF family CYA_0147 PF00005 ABC transporter CYA_0148 PF01717 Cobalamin-independent synthase, Catalytic domain CYA_0148 PF08267 Cobalamin-independent synthase, N-terminal domain CYA_0149 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYA_0150 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0151 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0151 PF12911 N-terminal TM domain of oligopeptide transport permease C CYA_0153 PF00005 ABC transporter CYA_0153 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYA_0154 PF18075 FtsX extracellular domain CYA_0154 PF02687 FtsX-like permease family CYA_0155 PF01192 RNA polymerase Rpb6 CYA_0158 PF12323 Helix-turn-helix domain CYA_0158 PF01385 Probable transposase CYA_0158 PF07282 Putative transposase DNA-binding domain CYA_0159 PF01699 Sodium/calcium exchanger protein CYA_0161 PF04127 DNA / pantothenate metabolism flavoprotein CYA_0161 PF02441 Flavoprotein CYA_0164 PF01494 FAD binding domain CYA_0166 PF08241 Methyltransferase domain CYA_0167 PF01717 Cobalamin-independent synthase, Catalytic domain CYA_0167 PF08267 Cobalamin-independent synthase, N-terminal domain CYA_0169 PF02391 MoaE protein CYA_0171 PF01967 MoaC family CYA_0171 PF12804 MobA-like NTP transferase domain CYA_0172 PF04055 Radical SAM superfamily CYA_0172 PF06463 Molybdenum Cofactor Synthesis C CYA_0173 PF03454 MoeA C-terminal region (domain IV) CYA_0173 PF00994 Probable molybdopterin binding domain CYA_0173 PF03453 MoeA N-terminal region (domain I and II) CYA_0178 PF01979 Amidohydrolase family CYA_0180 PF07724 AAA domain (Cdc48 subfamily) CYA_0180 PF02861 Clp amino terminal domain, pathogenicity island component CYA_0180 PF10431 C-terminal, D2-small domain, of ClpB protein CYA_0180 PF17871 AAA lid domain CYA_0180 PF00004 ATPase family associated with various cellular activities (AAA) CYA_0181 PF00575 S1 RNA binding domain CYA_0181 PF08206 Ribonuclease B OB domain CYA_0181 PF00773 RNB domain CYA_0181 PF17876 Cold shock domain CYA_0182 PF01895 PhoU domain CYA_0184 PF00128 Alpha amylase, catalytic domain CYA_0184 PF11941 Domain of unknown function (DUF3459) CYA_0188 PF01165 Ribosomal protein S21 CYA_0189 PF00089 Trypsin CYA_0193 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CYA_0193 PF13288 DXP reductoisomerase C-terminal domain CYA_0193 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CYA_0194 PF00664 ABC transporter transmembrane region CYA_0194 PF00005 ABC transporter CYA_0195 PF00117 Glutamine amidotransferase class-I CYA_0195 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CYA_0197 PF00114 Pilin (bacterial filament) CYA_0197 PF07963 Prokaryotic N-terminal methylation motif CYA_0201 PF00072 Response regulator receiver domain CYA_0201 PF00196 Bacterial regulatory proteins, luxR family CYA_0203 PF06827 Zinc finger found in FPG and IleRS CYA_0203 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CYA_0203 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CYA_0204 PF02427 Photosystem I reaction centre subunit IV / PsaE CYA_0206 PF02540 NAD synthase CYA_0206 PF00795 Carbon-nitrogen hydrolase CYA_0207 PF08459 UvrC Helix-hairpin-helix N-terminal CYA_0207 PF12826 Helix-hairpin-helix motif CYA_0207 PF02151 UvrB/uvrC motif CYA_0207 PF01541 GIY-YIG catalytic domain CYA_0208 PF00912 Transglycosylase CYA_0208 PF00905 Penicillin binding protein transpeptidase domain CYA_0208 PF17092 Penicillin-binding protein OB-like domain CYA_0209 PF00069 Protein kinase domain CYA_0211 PF00850 Histone deacetylase domain CYA_0213 PF03109 ABC1 family CYA_0215 PF00427 Phycobilisome Linker polypeptide CYA_0216 PF03130 PBS lyase HEAT-like repeat CYA_0217 PF03130 PBS lyase HEAT-like repeat CYA_0218 PF01383 CpcD/allophycocyanin linker domain CYA_0220 PF00502 Phycobilisome protein CYA_0221 PF00502 Phycobilisome protein CYA_0223 PF00290 Tryptophan synthase alpha chain CYA_0224 PF13458 Periplasmic binding protein CYA_0226 PF01385 Probable transposase CYA_0226 PF12323 Helix-turn-helix domain CYA_0226 PF07282 Putative transposase DNA-binding domain CYA_0228 PF00005 ABC transporter CYA_0235 PF00106 short chain dehydrogenase CYA_0239 PF02397 Bacterial sugar transferase CYA_0240 PF01259 SAICAR synthetase CYA_0243 PF03900 Porphobilinogen deaminase, C-terminal domain CYA_0243 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CYA_0246 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CYA_0246 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CYA_0247 PF02403 Seryl-tRNA synthetase N-terminal domain CYA_0247 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYA_0249 PF01435 Peptidase family M48 CYA_0251 PF00719 Inorganic pyrophosphatase CYA_0252 PF02683 Cytochrome C biogenesis protein transmembrane region CYA_0253 PF00360 Phytochrome region CYA_0253 PF01590 GAF domain CYA_0253 PF00990 Diguanylate cyclase, GGDEF domain CYA_0253 PF00563 EAL domain CYA_0254 PF05140 ResB-like family CYA_0255 PF01565 FAD binding domain CYA_0255 PF02913 FAD linked oxidases, C-terminal domain CYA_0258 PF01593 Flavin containing amine oxidoreductase CYA_0263 PF11896 Domain of unknown function (DUF3416) CYA_0263 PF00128 Alpha amylase, catalytic domain CYA_0267 PF02542 YgbB family CYA_0268 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYA_0270 PF00534 Glycosyl transferases group 1 CYA_0270 PF13439 Glycosyltransferase Family 4 CYA_0277 PF00156 Phosphoribosyl transferase domain CYA_0277 PF13537 Glutamine amidotransferase domain CYA_0278 PF01327 Polypeptide deformylase CYA_0283 PF01434 Peptidase family M41 CYA_0283 PF17862 AAA+ lid domain CYA_0283 PF00004 ATPase family associated with various cellular activities (AAA) CYA_0285 PF00288 GHMP kinases N terminal domain CYA_0285 PF08544 GHMP kinases C terminal CYA_0286 PF00330 Aconitase family (aconitate hydratase) CYA_0287 PF08543 Phosphomethylpyrimidine kinase CYA_0289 PF00111 2Fe-2S iron-sulfur cluster binding domain CYA_0291 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYA_0291 PF00588 SpoU rRNA Methylase family CYA_0292 PF00636 Ribonuclease III domain CYA_0293 PF02605 Photosystem I reaction centre subunit XI CYA_0294 PF01701 Photosystem I reaction centre subunit IX / PsaJ CYA_0295 PF02507 Photosystem I reaction centre subunit III CYA_0296 PF01134 Glucose inhibited division protein A CYA_0296 PF13932 GidA associated domain CYA_0297 PF00814 Glycoprotease family CYA_0298 PF00291 Pyridoxal-phosphate dependent enzyme CYA_0299 PF02469 Fasciclin domain CYA_0300 PF02597 ThiS family CYA_0301 PF02245 Methylpurine-DNA glycosylase (MPG) CYA_0303 PF03441 FAD binding domain of DNA photolyase CYA_0303 PF00875 DNA photolyase CYA_0305 PF00216 Bacterial DNA-binding protein CYA_0309 PF01588 Putative tRNA binding domain CYA_0309 PF03147 Ferredoxin-fold anticodon binding domain CYA_0309 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CYA_0309 PF03484 tRNA synthetase B5 domain CYA_0309 PF03483 B3/4 domain CYA_0310 PF00696 Amino acid kinase family CYA_0311 PF00664 ABC transporter transmembrane region CYA_0311 PF00005 ABC transporter CYA_0313 PF17862 AAA+ lid domain CYA_0313 PF01434 Peptidase family M41 CYA_0313 PF00004 ATPase family associated with various cellular activities (AAA) CYA_0315 PF00162 Phosphoglycerate kinase CYA_0316 PF01593 Flavin containing amine oxidoreductase CYA_0318 PF00271 Helicase conserved C-terminal domain CYA_0318 PF09369 Domain of unknown function (DUF1998) CYA_0318 PF00270 DEAD/DEAH box helicase CYA_0322 PF00176 SNF2 family N-terminal domain CYA_0322 PF00271 Helicase conserved C-terminal domain CYA_0322 PF18337 RapA N-terminal Tudor like domain CYA_0322 PF12137 RNA polymerase recycling family C-terminal CYA_0322 PF18339 RapA N-terminal Tudor like domain 1 CYA_0325 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYA_0325 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYA_0330 PF05690 Thiazole biosynthesis protein ThiG CYA_0330 PF01266 FAD dependent oxidoreductase CYA_0331 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) CYA_0332 PF00118 TCP-1/cpn60 chaperonin family CYA_0333 PF13619 KTSC domain CYA_0333 PF00152 tRNA synthetases class II (D, K and N) CYA_0333 PF01336 OB-fold nucleic acid binding domain CYA_0335 PF06745 KaiC CYA_0335 PF18073 Rubredoxin metal binding domain CYA_0336 PF01264 Chorismate synthase CYA_0337 PF03309 Type III pantothenate kinase CYA_0339 PF00291 Pyridoxal-phosphate dependent enzyme CYA_0343 PF00012 Hsp70 protein CYA_0349 PF13361 UvrD-like helicase C-terminal domain CYA_0349 PF00580 UvrD/REP helicase N-terminal domain CYA_0350 PF01029 NusB family CYA_0352 PF03358 NADPH-dependent FMN reductase CYA_0354 PF00534 Glycosyl transferases group 1 CYA_0354 PF13439 Glycosyltransferase Family 4 CYA_0358 PF07885 Ion channel CYA_0358 PF02254 TrkA-N domain CYA_0359 PF02637 GatB domain CYA_0359 PF02934 GatB/GatE catalytic domain CYA_0360 PF02545 Maf-like protein CYA_0361 PF00708 Acylphosphatase CYA_0362 PF00708 Acylphosphatase CYA_0364 PF00171 Aldehyde dehydrogenase family CYA_0365 PF13519 von Willebrand factor type A domain CYA_0365 PF01078 Magnesium chelatase, subunit ChlI CYA_0365 PF17863 AAA lid domain CYA_0369 PF04085 rod shape-determining protein MreC CYA_0371 PF00037 4Fe-4S binding domain CYA_0373 PF00069 Protein kinase domain CYA_0374 PF00535 Glycosyl transferase family 2 CYA_0375 PF00459 Inositol monophosphatase family CYA_0376 PF01208 Uroporphyrinogen decarboxylase (URO-D) CYA_0377 PF00348 Polyprenyl synthetase CYA_0380 PF13369 Transglutaminase-like superfamily CYA_0386 PF01872 RibD C-terminal domain CYA_0386 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYA_0387 PF00342 Phosphoglucose isomerase CYA_0388 PF01471 Putative peptidoglycan binding domain CYA_0388 PF10128 Glucose-6-phosphate dehydrogenase subunit CYA_0389 PF00762 Ferrochelatase CYA_0391 PF00266 Aminotransferase class-V CYA_0392 PF00248 Aldo/keto reductase family CYA_0398 PF00121 Triosephosphate isomerase CYA_0399 PF00128 Alpha amylase, catalytic domain CYA_0401 PF01435 Peptidase family M48 CYA_0402 PF00294 pfkB family carbohydrate kinase CYA_0403 PF00005 ABC transporter CYA_0403 PF00664 ABC transporter transmembrane region CYA_0405 PF02558 Ketopantoate reductase PanE/ApbA CYA_0405 PF08546 Ketopantoate reductase PanE/ApbA C terminal CYA_0406 PF00156 Phosphoribosyl transferase domain CYA_0408 PF01126 Heme oxygenase CYA_0409 PF04565 RNA polymerase Rpb2, domain 3 CYA_0409 PF10385 RNA polymerase beta subunit external 1 domain CYA_0409 PF04563 RNA polymerase beta subunit CYA_0409 PF04561 RNA polymerase Rpb2, domain 2 CYA_0409 PF00562 RNA polymerase Rpb2, domain 6 CYA_0409 PF04560 RNA polymerase Rpb2, domain 7 CYA_0410 PF00623 RNA polymerase Rpb1, domain 2 CYA_0410 PF04983 RNA polymerase Rpb1, domain 3 CYA_0410 PF04997 RNA polymerase Rpb1, domain 1 CYA_0411 PF04998 RNA polymerase Rpb1, domain 5 CYA_0411 PF04983 RNA polymerase Rpb1, domain 3 CYA_0411 PF05000 RNA polymerase Rpb1, domain 4 CYA_0412 PF03167 Uracil DNA glycosylase superfamily CYA_0413 PF08543 Phosphomethylpyrimidine kinase CYA_0413 PF02581 Thiamine monophosphate synthase CYA_0413 PF03070 TENA/THI-4/PQQC family CYA_0415 PF11266 Long-chain fatty aldehyde decarbonylase CYA_0420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYA_0420 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYA_0421 PF00072 Response regulator receiver domain CYA_0421 PF00486 Transcriptional regulatory protein, C terminal CYA_0422 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_0423 PF02082 Transcriptional regulator CYA_0424 PF03186 CobD/Cbib protein CYA_0427 PF00101 Ribulose bisphosphate carboxylase, small chain CYA_0427 PF00004 ATPase family associated with various cellular activities (AAA) CYA_0428 PF00999 Sodium/hydrogen exchanger family CYA_0429 PF00563 EAL domain CYA_0429 PF00498 FHA domain CYA_0429 PF00990 Diguanylate cyclase, GGDEF domain CYA_0434 PF00873 AcrB/AcrD/AcrF family CYA_0439 PF13649 Methyltransferase domain CYA_0448 PF13614 AAA domain CYA_0456 PF02576 RimP N-terminal domain CYA_0457 PF00575 S1 RNA binding domain CYA_0457 PF13184 NusA-like KH domain CYA_0457 PF08529 NusA N-terminal domain CYA_0458 PF02441 Flavoprotein CYA_0459 PF12697 Alpha/beta hydrolase family CYA_0461 PF02570 Precorrin-8X methylmutase CYA_0463 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_0465 PF17746 SfsA N-terminal OB domain CYA_0465 PF03749 Sugar fermentation stimulation protein RE domain CYA_0466 PF03372 Endonuclease/Exonuclease/phosphatase family CYA_0467 PF01625 Peptide methionine sulfoxide reductase CYA_0468 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0469 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0470 PF03459 TOBE domain CYA_0470 PF00005 ABC transporter CYA_0472 PF00583 Acetyltransferase (GNAT) family CYA_0472 PF13380 CoA binding domain CYA_0472 PF13607 Succinyl-CoA ligase like flavodoxin domain CYA_0473 PF00465 Iron-containing alcohol dehydrogenase CYA_0473 PF00171 Aldehyde dehydrogenase family CYA_0475 PF04055 Radical SAM superfamily CYA_0477 PF02901 Pyruvate formate lyase-like CYA_0477 PF01228 Glycine radical CYA_0478 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYA_0479 PF00072 Response regulator receiver domain CYA_0479 PF00486 Transcriptional regulatory protein, C terminal CYA_0480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CYA_0480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CYA_0481 PF00561 alpha/beta hydrolase fold CYA_0482 PF01597 Glycine cleavage H-protein CYA_0483 PF00990 Diguanylate cyclase, GGDEF domain CYA_0483 PF13185 GAF domain CYA_0483 PF00563 EAL domain CYA_0484 PF01370 NAD dependent epimerase/dehydratase family CYA_0485 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CYA_0485 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CYA_0485 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CYA_0486 PF01545 Cation efflux family CYA_0489 PF12697 Alpha/beta hydrolase family CYA_0490 PF07499 RuvA, C-terminal domain CYA_0490 PF01330 RuvA N terminal domain CYA_0491 PF01467 Cytidylyltransferase-like CYA_0492 PF12838 4Fe-4S dicluster domain CYA_0496 PF00171 Aldehyde dehydrogenase family CYA_0499 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYA_0499 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYA_0500 PF04107 Glutamate-cysteine ligase family 2(GCS2) CYA_0504 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CYA_0504 PF01502 Phosphoribosyl-AMP cyclohydrolase CYA_0505 PF01522 Polysaccharide deacetylase CYA_0505 PF14883 Hypothetical glycosyl hydrolase family 13 CYA_0510 PF02514 CobN/Magnesium Chelatase CYA_0511 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CYA_0512 PF10458 Valyl tRNA synthetase tRNA binding arm CYA_0512 PF08264 Anticodon-binding domain of tRNA CYA_0512 PF00133 tRNA synthetases class I (I, L, M and V) CYA_0513 PF13411 MerR HTH family regulatory protein CYA_0519 PF00676 Dehydrogenase E1 component CYA_0520 PF00361 Proton-conducting membrane transporter CYA_0528 PF00502 Phycobilisome protein CYA_0528 PF00427 Phycobilisome Linker polypeptide CYA_0529 PF02602 Uroporphyrinogen-III synthase HemD CYA_0530 PF00378 Enoyl-CoA hydratase/isomerase CYA_0531 PF01612 3'-5' exonuclease CYA_0531 PF00476 DNA polymerase family A CYA_0531 PF01367 5'-3' exonuclease, C-terminal SAM fold CYA_0531 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CYA_0532 PF00462 Glutaredoxin CYA_0534 PF01209 ubiE/COQ5 methyltransferase family CYA_0535 PF00491 Arginase family CYA_0536 PF02531 PsaD CYA_0537 PF00578 AhpC/TSA family CYA_0537 PF10417 C-terminal domain of 1-Cys peroxiredoxin CYA_0542 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CYA_0543 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CYA_0543 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CYA_0543 PF01488 Shikimate / quinate 5-dehydrogenase CYA_0544 PF05969 Photosystem II complex subunit Ycf12 CYA_0548 PF00583 Acetyltransferase (GNAT) family CYA_0553 PF10609 NUBPL iron-transfer P-loop NTPase CYA_0553 PF01883 Iron-sulfur cluster assembly protein CYA_0554 PF01103 Surface antigen CYA_0554 PF07244 Surface antigen variable number repeat CYA_0556 PF00132 Bacterial transferase hexapeptide (six repeats) CYA_0558 PF00462 Glutaredoxin CYA_0559 PF01722 BolA-like protein CYA_0560 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CYA_0561 PF01131 DNA topoisomerase CYA_0561 PF01751 Toprim domain CYA_0561 PF13368 Topoisomerase C-terminal repeat CYA_0563 PF12169 DNA polymerase III subunits gamma and tau domain III CYA_0565 PF01121 Dephospho-CoA kinase CYA_0566 PF00682 HMGL-like CYA_0566 PF08502 LeuA allosteric (dimerisation) domain CYA_0568 PF02540 NAD synthase CYA_0570 PF08865 Domain of unknown function (DUF1830) CYA_0574 PF02675 S-adenosylmethionine decarboxylase CYA_0575 PF17284 Spermidine synthase tetramerisation domain CYA_0576 PF00850 Histone deacetylase domain CYA_0582 PF00679 Elongation factor G C-terminus CYA_0582 PF00009 Elongation factor Tu GTP binding domain CYA_0582 PF03144 Elongation factor Tu domain 2 CYA_0582 PF06421 GTP-binding protein LepA C-terminus CYA_0588 PF07676 WD40-like Beta Propeller Repeat CYA_0589 PF00155 Aminotransferase class I and II CYA_0597 PF04545 Sigma-70, region 4 CYA_0597 PF04539 Sigma-70 region 3 CYA_0597 PF04542 Sigma-70 region 2 CYA_0603 PF00449 Urease alpha-subunit, N-terminal domain CYA_0603 PF01979 Amidohydrolase family CYA_0604 PF05194 UreE urease accessory protein, C-terminal domain CYA_0604 PF02814 UreE urease accessory protein, N-terminal domain CYA_0605 PF01730 UreF CYA_0606 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYA_0607 PF01774 UreD urease accessory protein CYA_0612 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYA_0612 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYA_0614 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0615 PF00005 ABC transporter CYA_0616 PF00005 ABC transporter CYA_0619 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYA_0619 PF01568 Molydopterin dinucleotide binding domain CYA_0619 PF00384 Molybdopterin oxidoreductase CYA_0622 PF02843 Phosphoribosylglycinamide synthetase, C domain CYA_0622 PF02844 Phosphoribosylglycinamide synthetase, N domain CYA_0622 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CYA_0624 PF01966 HD domain CYA_0626 PF17770 Ribonuclease J C-terminal domain CYA_0626 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CYA_0626 PF00753 Metallo-beta-lactamase superfamily CYA_0627 PF00701 Dihydrodipicolinate synthetase family CYA_0628 PF00881 Nitroreductase family CYA_0630 PF00591 Glycosyl transferase family, a/b domain CYA_0630 PF02885 Glycosyl transferase family, helical bundle domain CYA_0632 PF00551 Formyl transferase CYA_0634 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CYA_0636 PF02469 Fasciclin domain CYA_0637 PF07689 KaiB domain CYA_0637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_0637 PF00512 His Kinase A (phospho-acceptor) domain CYA_0639 PF00361 Proton-conducting membrane transporter CYA_0640 PF00361 Proton-conducting membrane transporter CYA_0640 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CYA_0640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYA_0642 PF05151 Photosystem II reaction centre M protein (PsbM) CYA_0644 PF00421 Photosystem II protein CYA_0645 PF01405 Photosystem II reaction centre T protein CYA_0647 PF00072 Response regulator receiver domain CYA_0648 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CYA_0651 PF04029 2-phosphosulpholactate phosphatase CYA_0652 PF02774 Semialdehyde dehydrogenase, dimerisation domain CYA_0652 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYA_0656 PF00004 ATPase family associated with various cellular activities (AAA) CYA_0656 PF07724 AAA domain (Cdc48 subfamily) CYA_0656 PF17871 AAA lid domain CYA_0656 PF02861 Clp amino terminal domain, pathogenicity island component CYA_0656 PF10431 C-terminal, D2-small domain, of ClpB protein CYA_0657 PF00574 Clp protease CYA_0659 PF00574 Clp protease CYA_0661 PF06206 CpeT/CpcT family (DUF1001) CYA_0662 PF00390 Malic enzyme, N-terminal domain CYA_0662 PF03949 Malic enzyme, NAD binding domain CYA_0667 PF00483 Nucleotidyl transferase CYA_0668 PF01593 Flavin containing amine oxidoreductase CYA_0671 PF02557 D-alanyl-D-alanine carboxypeptidase CYA_0672 PF00578 AhpC/TSA family CYA_0673 PF02824 TGS domain CYA_0673 PF04607 Region found in RelA / SpoT proteins CYA_0673 PF13291 ACT domain CYA_0675 PF00571 CBS domain CYA_0675 PF03448 MgtE intracellular N domain CYA_0675 PF01769 Divalent cation transporter CYA_0677 PF02308 MgtC family CYA_0678 PF01169 Uncharacterized protein family UPF0016 CYA_0680 PF02021 Uncharacterised protein family UPF0102 CYA_0681 PF05991 YacP-like NYN domain CYA_0684 PF00483 Nucleotidyl transferase CYA_0685 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYA_0686 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0688 PF00890 FAD binding domain CYA_0688 PF02910 Fumarate reductase flavoprotein C-term CYA_0689 PF00202 Aminotransferase class-III CYA_0692 PF04055 Radical SAM superfamily CYA_0693 PF01926 50S ribosome-binding GTPase CYA_0693 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYA_0697 PF03819 MazG nucleotide pyrophosphohydrolase domain CYA_0702 PF12627 Probable RNA and SrmB- binding site of polymerase A CYA_0702 PF01743 Poly A polymerase head domain CYA_0702 PF01966 HD domain CYA_0703 PF01765 Ribosome recycling factor CYA_0705 PF14495 Cytochrome c-550 domain CYA_0706 PF01169 Uncharacterized protein family UPF0016 CYA_0707 PF03652 Holliday junction resolvase CYA_0708 PF02021 Uncharacterised protein family UPF0102 CYA_0709 PF05221 S-adenosyl-L-homocysteine hydrolase CYA_0709 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CYA_0710 PF00764 Arginosuccinate synthase CYA_0713 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYA_0713 PF01926 50S ribosome-binding GTPase CYA_0714 PF04055 Radical SAM superfamily CYA_0718 PF01220 Dehydroquinase class II CYA_0719 PF00085 Thioredoxin CYA_0721 PF13476 AAA domain CYA_0724 PF02514 CobN/Magnesium Chelatase CYA_0725 PF13202 EF hand CYA_0725 PF00923 Transaldolase/Fructose-6-phosphate aldolase CYA_0728 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CYA_0729 PF01867 CRISPR associated protein Cas1 CYA_0730 PF08798 CRISPR associated protein CYA_0734 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CYA_0735 PF18395 Cas3 C-terminal domain CYA_0735 PF18019 HD domain CYA_0740 PF00849 RNA pseudouridylate synthase CYA_0740 PF01479 S4 domain CYA_0741 PF00391 PEP-utilising enzyme, mobile domain CYA_0741 PF02896 PEP-utilising enzyme, TIM barrel domain CYA_0741 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CYA_0742 PF02817 e3 binding domain CYA_0742 PF00364 Biotin-requiring enzyme CYA_0742 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYA_0744 PF12838 4Fe-4S dicluster domain CYA_0745 PF00146 NADH dehydrogenase CYA_0747 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CYA_0749 PF02627 Carboxymuconolactone decarboxylase family CYA_0753 PF01774 UreD urease accessory protein CYA_0756 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CYA_0759 PF00448 SRP54-type protein, GTPase domain CYA_0759 PF02881 SRP54-type protein, helical bundle domain CYA_0760 PF01842 ACT domain CYA_0760 PF00551 Formyl transferase CYA_0761 PF02416 mttA/Hcf106 family CYA_0762 PF07516 SecA Wing and Scaffold domain CYA_0762 PF07517 SecA DEAD-like domain CYA_0762 PF01043 SecA preprotein cross-linking domain CYA_0764 PF01522 Polysaccharide deacetylase CYA_0765 PF12392 Collagenase CYA_0765 PF01136 Peptidase family U32 CYA_0768 PF00300 Histidine phosphatase superfamily (branch 1) CYA_0769 PF00085 Thioredoxin CYA_0771 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CYA_0773 PF01479 S4 domain CYA_0773 PF00849 RNA pseudouridylate synthase CYA_0776 PF02033 Ribosome-binding factor A CYA_0780 PF00875 DNA photolyase CYA_0780 PF03441 FAD binding domain of DNA photolyase CYA_0781 PF00245 Alkaline phosphatase CYA_0782 PF13559 Domain of unknown function (DUF4129) CYA_0782 PF01841 Transglutaminase-like superfamily CYA_0782 PF11992 Domain of unknown function (DUF3488) CYA_0784 PF17760 UvrA interaction domain CYA_0784 PF17755 UvrA DNA-binding domain CYA_0785 PF04055 Radical SAM superfamily CYA_0787 PF00012 Hsp70 protein CYA_0788 PF00684 DnaJ central domain CYA_0788 PF01556 DnaJ C terminal domain CYA_0788 PF00226 DnaJ domain CYA_0789 PF00581 Rhodanese-like domain CYA_0789 PF01206 Sulfurtransferase TusA CYA_0790 PF03193 RsgA GTPase CYA_0795 PF07689 KaiB domain CYA_0795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_0795 PF00512 His Kinase A (phospho-acceptor) domain CYA_0796 PF00072 Response regulator receiver domain CYA_0798 PF00075 RNase H CYA_0799 PF07085 DRTGG domain CYA_0800 PF02386 Cation transport protein CYA_0801 PF02080 TrkA-C domain CYA_0801 PF02254 TrkA-N domain CYA_0802 PF07724 AAA domain (Cdc48 subfamily) CYA_0802 PF10431 C-terminal, D2-small domain, of ClpB protein CYA_0802 PF06689 ClpX C4-type zinc finger CYA_0803 PF03120 NAD-dependent DNA ligase OB-fold domain CYA_0803 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CYA_0803 PF12826 Helix-hairpin-helix motif CYA_0803 PF00533 BRCA1 C Terminus (BRCT) domain CYA_0803 PF01653 NAD-dependent DNA ligase adenylation domain CYA_0804 PF14622 Ribonuclease-III-like CYA_0804 PF00035 Double-stranded RNA binding motif CYA_0809 PF00633 Helix-hairpin-helix motif CYA_0809 PF00730 HhH-GPD superfamily base excision DNA repair protein CYA_0809 PF14815 NUDIX domain CYA_0815 PF00155 Aminotransferase class I and II CYA_0821 PF10150 Ribonuclease E/G family CYA_0822 PF01351 Ribonuclease HII CYA_0825 PF00741 Gas vesicle protein CYA_0826 PF07728 AAA domain (dynein-related subfamily) CYA_0829 PF00741 Gas vesicle protein CYA_0833 PF00502 Phycobilisome protein CYA_0838 PF00311 Phosphoenolpyruvate carboxylase CYA_0840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_0840 PF00512 His Kinase A (phospho-acceptor) domain CYA_0840 PF09456 RcsC Alpha-Beta-Loop (ABL) CYA_0840 PF00072 Response regulator receiver domain CYA_0844 PF00557 Metallopeptidase family M24 CYA_0845 PF00654 Voltage gated chloride channel CYA_0846 PF00730 HhH-GPD superfamily base excision DNA repair protein CYA_0846 PF00633 Helix-hairpin-helix motif CYA_0846 PF10576 Iron-sulfur binding domain of endonuclease III CYA_0847 PF03033 Glycosyltransferase family 28 N-terminal domain CYA_0847 PF04101 Glycosyltransferase family 28 C-terminal domain CYA_0848 PF14870 Photosynthesis system II assembly factor YCF48 CYA_0850 PF00990 Diguanylate cyclase, GGDEF domain CYA_0850 PF00498 FHA domain CYA_0850 PF00563 EAL domain CYA_0852 PF02785 Biotin carboxylase C-terminal domain CYA_0852 PF00289 Biotin carboxylase, N-terminal domain CYA_0852 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYA_0853 PF00589 Phage integrase family CYA_0853 PF02899 Phage integrase, N-terminal SAM-like domain CYA_0856 PF00226 DnaJ domain CYA_0856 PF01556 DnaJ C terminal domain CYA_0856 PF00684 DnaJ central domain CYA_0859 PF00491 Arginase family CYA_0860 PF01168 Alanine racemase, N-terminal domain CYA_0861 PF04472 Cell division protein SepF CYA_0862 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYA_0863 PF14748 Pyrroline-5-carboxylate reductase dimerisation CYA_0863 PF03807 NADP oxidoreductase coenzyme F420-dependent CYA_0869 PF01218 Coproporphyrinogen III oxidase CYA_0870 PF01738 Dienelactone hydrolase family CYA_0877 PF03787 RAMP superfamily CYA_0885 PF09827 CRISPR associated protein Cas2 CYA_0890 PF09620 CRISPR-associated protein (Cas_csx3) CYA_0891 PF00005 ABC transporter CYA_0892 PF00005 ABC transporter CYA_0893 PF00528 Binding-protein-dependent transport system inner membrane component CYA_0895 PF00148 Nitrogenase component 1 type Oxidoreductase CYA_0895 PF08369 Proto-chlorophyllide reductase 57 kD subunit CYA_0902 PF01740 STAS domain CYA_0903 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_0907 PF00578 AhpC/TSA family CYA_0909 PF03009 Glycerophosphoryl diester phosphodiesterase family CYA_0910 PF01933 Uncharacterised protein family UPF0052 CYA_0911 PF03668 P-loop ATPase protein family CYA_0912 PF00730 HhH-GPD superfamily base excision DNA repair protein CYA_0912 PF00633 Helix-hairpin-helix motif CYA_0913 PF02163 Peptidase family M50 CYA_0913 PF13180 PDZ domain CYA_0914 PF01106 NifU-like domain CYA_0916 PF00672 HAMP domain CYA_0916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_0916 PF00512 His Kinase A (phospho-acceptor) domain CYA_0916 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CYA_0916 PF00072 Response regulator receiver domain CYA_0916 PF01627 Hpt domain CYA_0917 PF00398 Ribosomal RNA adenine dimethylase CYA_0919 PF01343 Peptidase family S49 CYA_0923 PF00999 Sodium/hydrogen exchanger family CYA_0923 PF02254 TrkA-N domain CYA_0923 PF02080 TrkA-C domain CYA_0925 PF01649 Ribosomal protein S20 CYA_0927 PF00486 Transcriptional regulatory protein, C terminal CYA_0927 PF00072 Response regulator receiver domain CYA_0929 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_0935 PF04461 Protein of unknown function (DUF520) CYA_0936 PF00106 short chain dehydrogenase CYA_0938 PF00498 FHA domain CYA_0938 PF00563 EAL domain CYA_0938 PF00990 Diguanylate cyclase, GGDEF domain CYA_0939 PF03717 Penicillin-binding Protein dimerisation domain CYA_0939 PF00905 Penicillin binding protein transpeptidase domain CYA_0940 PF00216 Bacterial DNA-binding protein CYA_0941 PF00155 Aminotransferase class I and II CYA_0944 PF09084 NMT1/THI5 like CYA_0945 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CYA_0945 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CYA_0946 PF02445 Quinolinate synthetase A protein CYA_0947 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CYA_0947 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CYA_0948 PF02910 Fumarate reductase flavoprotein C-term CYA_0948 PF00890 FAD binding domain CYA_0950 PF01969 Protein of unknown function DUF111 CYA_0951 PF00005 ABC transporter CYA_0951 PF06472 ABC transporter transmembrane region 2 CYA_0952 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYA_0952 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYA_0956 PF02086 D12 class N6 adenine-specific DNA methyltransferase CYA_0959 PF00117 Glutamine amidotransferase class-I CYA_0960 PF08245 Mur ligase middle domain CYA_0961 PF01098 Cell cycle protein CYA_0964 PF00561 alpha/beta hydrolase fold CYA_0965 PF10726 Protein of function (DUF2518) CYA_0966 PF13545 Crp-like helix-turn-helix domain CYA_0967 PF01975 Survival protein SurE CYA_0969 PF00117 Glutamine amidotransferase class-I CYA_0971 PF01025 GrpE CYA_0972 PF00149 Calcineurin-like phosphoesterase CYA_0972 PF02872 5'-nucleotidase, C-terminal domain CYA_0973 PF04286 Protein of unknown function (DUF445) CYA_0975 PF03424 Carbohydrate binding domain (family 17/28) CYA_0975 PF00150 Cellulase (glycosyl hydrolase family 5) CYA_0975 PF00395 S-layer homology domain CYA_0976 PF00248 Aldo/keto reductase family CYA_0978 PF00072 Response regulator receiver domain CYA_0978 PF00486 Transcriptional regulatory protein, C terminal CYA_0983 PF00144 Beta-lactamase CYA_0984 PF03466 LysR substrate binding domain CYA_0984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYA_0985 PF02885 Glycosyl transferase family, helical bundle domain CYA_0985 PF00591 Glycosyl transferase family, a/b domain CYA_0992 PF00465 Iron-containing alcohol dehydrogenase CYA_0996 PF03958 Bacterial type II/III secretion system short domain CYA_0996 PF00263 Bacterial type II and III secretion system protein CYA_1002 PF01276 Orn/Lys/Arg decarboxylase, major domain CYA_1002 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CYA_1003 PF00571 CBS domain CYA_1003 PF01595 Cyclin M transmembrane N-terminal domain CYA_1003 PF03471 Transporter associated domain CYA_1005 PF01063 Amino-transferase class IV CYA_1006 PF00156 Phosphoribosyl transferase domain CYA_1012 PF05711 Macrocin-O-methyltransferase (TylF) CYA_1015 PF00132 Bacterial transferase hexapeptide (six repeats) CYA_1015 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CYA_1024 PF00005 ABC transporter CYA_1026 PF03239 Iron permease FTR1 family CYA_1027 PF01641 SelR domain CYA_1028 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N CYA_1031 PF01040 UbiA prenyltransferase family CYA_1033 PF00486 Transcriptional regulatory protein, C terminal CYA_1033 PF00072 Response regulator receiver domain CYA_1034 PF00762 Ferrochelatase CYA_1039 PF14403 Circularly permuted ATP-grasp type 2 CYA_1039 PF04168 A predicted alpha-helical domain with a conserved ER motif. CYA_1040 PF00132 Bacterial transferase hexapeptide (six repeats) CYA_1041 PF14403 Circularly permuted ATP-grasp type 2 CYA_1047 PF00583 Acetyltransferase (GNAT) family CYA_1048 PF01329 Pterin 4 alpha carbinolamine dehydratase CYA_1049 PF08338 Domain of unknown function (DUF1731) CYA_1049 PF01370 NAD dependent epimerase/dehydratase family CYA_1050 PF00005 ABC transporter CYA_1051 PF00534 Glycosyl transferases group 1 CYA_1051 PF13439 Glycosyltransferase Family 4 CYA_1055 PF01209 ubiE/COQ5 methyltransferase family CYA_1056 PF05690 Thiazole biosynthesis protein ThiG CYA_1058 PF01266 FAD dependent oxidoreductase CYA_1059 PF00149 Calcineurin-like phosphoesterase CYA_1059 PF02872 5'-nucleotidase, C-terminal domain CYA_1060 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CYA_1063 PF00334 Nucleoside diphosphate kinase CYA_1064 PF00005 ABC transporter CYA_1068 PF03055 Retinal pigment epithelial membrane protein CYA_1069 PF00448 SRP54-type protein, GTPase domain CYA_1069 PF02978 Signal peptide binding domain CYA_1069 PF02881 SRP54-type protein, helical bundle domain CYA_1071 PF00588 SpoU rRNA Methylase family CYA_1072 PF03793 PASTA domain CYA_1072 PF03717 Penicillin-binding Protein dimerisation domain CYA_1072 PF00905 Penicillin binding protein transpeptidase domain CYA_1073 PF00795 Carbon-nitrogen hydrolase CYA_1073 PF00535 Glycosyl transferase family 2 CYA_1074 PF07697 7TM-HD extracellular CYA_1074 PF07698 7TM receptor with intracellular HD hydrolase CYA_1074 PF01966 HD domain CYA_1076 PF01648 4'-phosphopantetheinyl transferase superfamily CYA_1077 PF03816 Cell envelope-related transcriptional attenuator domain CYA_1079 PF00183 Hsp90 protein CYA_1079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_1081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYA_1081 PF03466 LysR substrate binding domain CYA_1082 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CYA_1083 PF03477 ATP cone domain CYA_1090 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CYA_1091 PF01790 Prolipoprotein diacylglyceryl transferase CYA_1092 PF00154 recA bacterial DNA recombination protein CYA_1093 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYA_1093 PF00588 SpoU rRNA Methylase family CYA_1094 PF01189 16S rRNA methyltransferase RsmB/F CYA_1094 PF01029 NusB family CYA_1095 PF02586 SOS response associated peptidase (SRAP) CYA_1097 PF16657 Maltogenic Amylase, C-terminal domain CYA_1097 PF00128 Alpha amylase, catalytic domain CYA_1100 PF00742 Homoserine dehydrogenase CYA_1100 PF03447 Homoserine dehydrogenase, NAD binding domain CYA_1100 PF01842 ACT domain CYA_1103 PF11805 Protein of unknown function (DUF3326) CYA_1104 PF02374 Anion-transporting ATPase CYA_1108 PF07715 TonB-dependent Receptor Plug Domain CYA_1108 PF00593 TonB dependent receptor CYA_1112 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CYA_1112 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CYA_1113 PF00570 HRDC domain CYA_1113 PF01612 3'-5' exonuclease CYA_1114 PF00253 Ribosomal protein S14p/S29e CYA_1116 PF10396 GTP-binding protein TrmE N-terminus CYA_1116 PF12631 MnmE helical domain CYA_1116 PF01926 50S ribosome-binding GTPase CYA_1120 PF17768 RecJ OB domain CYA_1120 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CYA_1120 PF01368 DHH family CYA_1120 PF02272 DHHA1 domain CYA_1122 PF00149 Calcineurin-like phosphoesterase CYA_1123 PF01507 Phosphoadenosine phosphosulfate reductase family CYA_1125 PF01022 Bacterial regulatory protein, arsR family CYA_1130 PF12792 CSS motif domain associated with EAL CYA_1130 PF00563 EAL domain CYA_1131 PF07690 Major Facilitator Superfamily CYA_1132 PF00753 Metallo-beta-lactamase superfamily CYA_1132 PF16123 Hydroxyacylglutathione hydrolase C-terminus CYA_1134 PF01556 DnaJ C terminal domain CYA_1134 PF00684 DnaJ central domain CYA_1134 PF00226 DnaJ domain CYA_1135 PF01783 Ribosomal L32p protein family CYA_1136 PF01385 Probable transposase CYA_1136 PF07282 Putative transposase DNA-binding domain CYA_1136 PF12323 Helix-turn-helix domain CYA_1139 PF13460 NAD(P)H-binding CYA_1144 PF01571 Aminomethyltransferase folate-binding domain CYA_1148 PF02401 LytB protein CYA_1151 PF03479 Plants and Prokaryotes Conserved (PCC) domain CYA_1151 PF12804 MobA-like NTP transferase domain CYA_1151 PF00132 Bacterial transferase hexapeptide (six repeats) CYA_1153 PF00355 Rieske [2Fe-2S] domain CYA_1154 PF00534 Glycosyl transferases group 1 CYA_1154 PF13439 Glycosyltransferase Family 4 CYA_1156 PF12697 Alpha/beta hydrolase family CYA_1157 PF01176 Translation initiation factor 1A / IF-1 CYA_1158 PF00557 Metallopeptidase family M24 CYA_1160 PF00344 SecY translocase CYA_1161 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CYA_1163 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CYA_1164 PF00347 Ribosomal protein L6 CYA_1165 PF00410 Ribosomal protein S8 CYA_1166 PF00281 Ribosomal protein L5 CYA_1166 PF00673 ribosomal L5P family C-terminus CYA_1167 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CYA_1167 PF00467 KOW motif CYA_1168 PF00238 Ribosomal protein L14p/L23e CYA_1169 PF00366 Ribosomal protein S17 CYA_1170 PF00831 Ribosomal L29 protein CYA_1171 PF00252 Ribosomal protein L16p/L10e CYA_1172 PF00189 Ribosomal protein S3, C-terminal domain CYA_1172 PF07650 KH domain CYA_1173 PF00237 Ribosomal protein L22p/L17e CYA_1174 PF00203 Ribosomal protein S19 CYA_1175 PF03947 Ribosomal Proteins L2, C-terminal domain CYA_1175 PF00181 Ribosomal Proteins L2, RNA binding domain CYA_1176 PF00276 Ribosomal protein L23 CYA_1177 PF00573 Ribosomal protein L4/L1 family CYA_1178 PF00297 Ribosomal protein L3 CYA_1181 PF01385 Probable transposase CYA_1181 PF12323 Helix-turn-helix domain CYA_1181 PF07282 Putative transposase DNA-binding domain CYA_1186 PF00438 S-adenosylmethionine synthetase, N-terminal domain CYA_1186 PF02772 S-adenosylmethionine synthetase, central domain CYA_1186 PF02773 S-adenosylmethionine synthetase, C-terminal domain CYA_1188 PF12557 Cob(I)alamin adenosyltransferase N terminal CYA_1188 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CYA_1189 PF07685 CobB/CobQ-like glutamine amidotransferase domain CYA_1189 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CYA_1193 PF00574 Clp protease CYA_1194 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CYA_1194 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CYA_1196 PF00101 Ribulose bisphosphate carboxylase, small chain CYA_1197 PF01940 Integral membrane protein DUF92 CYA_1201 PF02562 PhoH-like protein CYA_1202 PF00561 alpha/beta hydrolase fold CYA_1203 PF13419 Haloacid dehalogenase-like hydrolase CYA_1205 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CYA_1206 PF00291 Pyridoxal-phosphate dependent enzyme CYA_1209 PF00005 ABC transporter CYA_1210 PF00224 Pyruvate kinase, barrel domain CYA_1210 PF02887 Pyruvate kinase, alpha/beta domain CYA_1213 PF00773 RNB domain CYA_1214 PF00486 Transcriptional regulatory protein, C terminal CYA_1214 PF00072 Response regulator receiver domain CYA_1215 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus CYA_1215 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term CYA_1216 PF00155 Aminotransferase class I and II CYA_1217 PF01926 50S ribosome-binding GTPase CYA_1217 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYA_1218 PF01668 SmpB protein CYA_1219 PF13417 Glutathione S-transferase, N-terminal domain CYA_1220 PF07650 KH domain CYA_1220 PF01926 50S ribosome-binding GTPase CYA_1221 PF04122 Putative cell wall binding repeat 2 CYA_1221 PF08486 Stage II sporulation protein CYA_1224 PF17863 AAA lid domain CYA_1224 PF07726 ATPase family associated with various cellular activities (AAA) CYA_1226 PF02082 Transcriptional regulator CYA_1227 PF00575 S1 RNA binding domain CYA_1229 PF06055 Exopolysaccharide synthesis, ExoD CYA_1230 PF06386 Gas vesicle synthesis protein GvpL/GvpF CYA_1231 PF00483 Nucleotidyl transferase CYA_1232 PF01634 ATP phosphoribosyltransferase CYA_1233 PF01716 Manganese-stabilising protein / photosystem II polypeptide CYA_1235 PF11283 Protein of unknown function (DUF3084) CYA_1238 PF05697 Bacterial trigger factor protein (TF) CYA_1238 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYA_1238 PF05698 Bacterial trigger factor protein (TF) C-terminus CYA_1240 PF01578 Cytochrome C assembly protein CYA_1242 PF08669 Glycine cleavage T-protein C-terminal barrel domain CYA_1242 PF01571 Aminomethyltransferase folate-binding domain CYA_1243 PF04539 Sigma-70 region 3 CYA_1243 PF00140 Sigma-70 factor, region 1.2 CYA_1243 PF04545 Sigma-70, region 4 CYA_1243 PF04542 Sigma-70 region 2 CYA_1244 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYA_1249 PF13378 Enolase C-terminal domain-like CYA_1252 PF00072 Response regulator receiver domain CYA_1253 PF01195 Peptidyl-tRNA hydrolase CYA_1256 PF08264 Anticodon-binding domain of tRNA CYA_1256 PF13603 Leucyl-tRNA synthetase, Domain 2 CYA_1256 PF00133 tRNA synthetases class I (I, L, M and V) CYA_1257 PF01383 CpcD/allophycocyanin linker domain CYA_1257 PF00970 Oxidoreductase FAD-binding domain CYA_1257 PF00175 Oxidoreductase NAD-binding domain CYA_1258 PF00485 Phosphoribulokinase / Uridine kinase family CYA_1259 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CYA_1264 PF03775 Septum formation inhibitor MinC, C-terminal domain CYA_1265 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CYA_1266 PF03776 Septum formation topological specificity factor MinE CYA_1268 PF03471 Transporter associated domain CYA_1268 PF02080 TrkA-C domain CYA_1268 PF00999 Sodium/hydrogen exchanger family CYA_1269 PF02660 Glycerol-3-phosphate acyltransferase CYA_1270 PF09115 DNA polymerase III, delta subunit, C terminal CYA_1271 PF00364 Biotin-requiring enzyme CYA_1272 PF09285 Elongation factor P, C-terminal CYA_1272 PF01132 Elongation factor P (EF-P) OB domain CYA_1272 PF08207 Elongation factor P (EF-P) KOW-like domain CYA_1273 PF00814 Glycoprotease family CYA_1274 PF00124 Photosynthetic reaction centre protein CYA_1280 PF00902 Sec-independent protein translocase protein (TatC) CYA_1282 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1283 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1284 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYA_1285 PF00005 ABC transporter CYA_1290 PF00290 Tryptophan synthase alpha chain CYA_1298 PF00156 Phosphoribosyl transferase domain CYA_1299 PF00164 Ribosomal protein S12/S23 CYA_1300 PF00177 Ribosomal protein S7p/S5e CYA_1301 PF14492 Elongation Factor G, domain II CYA_1301 PF03764 Elongation factor G, domain IV CYA_1301 PF03144 Elongation factor Tu domain 2 CYA_1301 PF00009 Elongation factor Tu GTP binding domain CYA_1301 PF00679 Elongation factor G C-terminus CYA_1302 PF00009 Elongation factor Tu GTP binding domain CYA_1302 PF03144 Elongation factor Tu domain 2 CYA_1302 PF03143 Elongation factor Tu C-terminal domain CYA_1303 PF00338 Ribosomal protein S10p/S20e CYA_1305 PF01113 Dihydrodipicolinate reductase, N-terminus CYA_1305 PF05173 Dihydrodipicolinate reductase, C-terminus CYA_1308 PF01266 FAD dependent oxidoreductase CYA_1310 PF00902 Sec-independent protein translocase protein (TatC) CYA_1318 PF06750 Bacterial Peptidase A24 N-terminal domain CYA_1318 PF01478 Type IV leader peptidase family CYA_1319 PF02514 CobN/Magnesium Chelatase CYA_1319 PF11965 Domain of unknown function (DUF3479) CYA_1321 PF00580 UvrD/REP helicase N-terminal domain CYA_1321 PF13361 UvrD-like helicase C-terminal domain CYA_1324 PF01678 Diaminopimelate epimerase CYA_1325 PF02468 Photosystem II reaction centre N protein (psbN) CYA_1326 PF00737 Photosystem II 10 kDa phosphoprotein CYA_1327 PF01960 ArgJ family CYA_1328 PF00005 ABC transporter CYA_1331 PF13545 Crp-like helix-turn-helix domain CYA_1331 PF00027 Cyclic nucleotide-binding domain CYA_1334 PF00107 Zinc-binding dehydrogenase CYA_1334 PF08240 Alcohol dehydrogenase GroES-like domain CYA_1337 PF00502 Phycobilisome protein CYA_1338 PF16198 tRNA pseudouridylate synthase B C-terminal domain CYA_1338 PF09157 Pseudouridine synthase II TruB, C-terminal CYA_1338 PF01509 TruB family pseudouridylate synthase (N terminal domain) CYA_1339 PF00892 EamA-like transporter family CYA_1340 PF00579 tRNA synthetases class I (W and Y) CYA_1342 PF13176 Tetratricopeptide repeat CYA_1342 PF00515 Tetratricopeptide repeat CYA_1343 PF02686 Glu-tRNAGln amidotransferase C subunit CYA_1346 PF02727 Copper amine oxidase, N2 domain CYA_1346 PF02728 Copper amine oxidase, N3 domain CYA_1346 PF01179 Copper amine oxidase, enzyme domain CYA_1349 PF00512 His Kinase A (phospho-acceptor) domain CYA_1349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_1349 PF00672 HAMP domain CYA_1349 PF00989 PAS fold CYA_1353 PF08245 Mur ligase middle domain CYA_1353 PF02875 Mur ligase family, glutamate ligase domain CYA_1354 PF01842 ACT domain CYA_1354 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYA_1354 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYA_1361 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CYA_1361 PF02769 AIR synthase related protein, C-terminal domain CYA_1361 PF00586 AIR synthase related protein, N-terminal domain CYA_1362 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYA_1363 PF00120 Glutamine synthetase, catalytic domain CYA_1363 PF03951 Glutamine synthetase, beta-Grasp domain CYA_1365 PF00106 short chain dehydrogenase CYA_1366 PF00999 Sodium/hydrogen exchanger family CYA_1366 PF00582 Universal stress protein family CYA_1368 PF13662 Toprim domain CYA_1368 PF02132 RecR protein CYA_1369 PF02575 YbaB/EbfC DNA-binding family CYA_1370 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1371 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CYA_1372 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CYA_1383 PF01475 Ferric uptake regulator family CYA_1385 PF02617 ATP-dependent Clp protease adaptor protein ClpS CYA_1386 PF02277 Phosphoribosyltransferase CYA_1392 PF00486 Transcriptional regulatory protein, C terminal CYA_1392 PF00072 Response regulator receiver domain CYA_1394 PF11967 Recombination protein O N terminal CYA_1394 PF02565 Recombination protein O C terminal CYA_1395 PF01791 DeoC/LacD family aldolase CYA_1398 PF00133 tRNA synthetases class I (I, L, M and V) CYA_1398 PF08264 Anticodon-binding domain of tRNA CYA_1398 PF09334 tRNA synthetases class I (M) CYA_1403 PF00355 Rieske [2Fe-2S] domain CYA_1404 PF01333 Apocytochrome F, C-terminal CYA_1404 PF16639 Apocytochrome F, N-terminal CYA_1405 PF02567 Phenazine biosynthesis-like protein CYA_1406 PF00166 Chaperonin 10 Kd subunit CYA_1407 PF00118 TCP-1/cpn60 chaperonin family CYA_1409 PF00478 IMP dehydrogenase / GMP reductase domain CYA_1411 PF04966 Carbohydrate-selective porin, OprB family CYA_1411 PF00395 S-layer homology domain CYA_1412 PF00395 S-layer homology domain CYA_1412 PF04966 Carbohydrate-selective porin, OprB family CYA_1414 PF00916 Sulfate permease family CYA_1414 PF01740 STAS domain CYA_1415 PF00521 DNA gyrase/topoisomerase IV, subunit A CYA_1415 PF03989 DNA gyrase C-terminal domain, beta-propeller CYA_1417 PF02595 Glycerate kinase family CYA_1418 PF03912 Psb28 protein CYA_1419 PF01425 Amidase CYA_1426 PF00111 2Fe-2S iron-sulfur cluster binding domain CYA_1441 PF17912 MalK OB fold domain CYA_1441 PF00005 ABC transporter CYA_1441 PF03459 TOBE domain CYA_1442 PF00011 Hsp20/alpha crystallin family CYA_1444 PF00330 Aconitase family (aconitate hydratase) CYA_1444 PF06434 Aconitate hydratase 2 N-terminus CYA_1444 PF11791 Aconitate B N-terminal domain CYA_1445 PF03462 PCRF domain CYA_1445 PF00472 RF-1 domain CYA_1446 PF01197 Ribosomal protein L31 CYA_1447 PF00380 Ribosomal protein S9/S16 CYA_1448 PF00572 Ribosomal protein L13 CYA_1449 PF01416 tRNA pseudouridine synthase CYA_1450 PF01196 Ribosomal protein L17 CYA_1451 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CYA_1451 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CYA_1451 PF01000 RNA polymerase Rpb3/RpoA insert domain CYA_1452 PF00411 Ribosomal protein S11 CYA_1453 PF00416 Ribosomal protein S13/S18 CYA_1454 PF00444 Ribosomal protein L36 CYA_1457 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase CYA_1457 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CYA_1458 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CYA_1458 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CYA_1459 PF01925 Sulfite exporter TauE/SafE CYA_1460 PF01817 Chorismate mutase type II CYA_1460 PF01842 ACT domain CYA_1460 PF00800 Prephenate dehydratase CYA_1462 PF01168 Alanine racemase, N-terminal domain CYA_1462 PF00842 Alanine racemase, C-terminal domain CYA_1463 PF01343 Peptidase family S49 CYA_1466 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CYA_1466 PF18074 Primosomal protein N C-terminal domain CYA_1466 PF17764 3′ DNA-binding domain (3′BD) CYA_1466 PF00271 Helicase conserved C-terminal domain CYA_1466 PF00270 DEAD/DEAH box helicase CYA_1467 PF18324 Hypothetical protein TT1725 CYA_1467 PF00180 Isocitrate/isopropylmalate dehydrogenase CYA_1468 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYA_1473 PF12557 Cob(I)alamin adenosyltransferase N terminal CYA_1473 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CYA_1474 PF00692 dUTPase CYA_1476 PF02547 Queuosine biosynthesis protein CYA_1477 PF00248 Aldo/keto reductase family CYA_1479 PF06418 CTP synthase N-terminus CYA_1479 PF00117 Glutamine amidotransferase class-I CYA_1482 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYA_1483 PF00741 Gas vesicle protein CYA_1483 PF05121 Gas vesicle protein K CYA_1484 PF00361 Proton-conducting membrane transporter CYA_1485 PF02392 Ycf4 CYA_1487 PF11378 Protein of unknown function (DUF3181) CYA_1490 PF04542 Sigma-70 region 2 CYA_1490 PF08281 Sigma-70, region 4 CYA_1495 PF02361 Cobalt transport protein CYA_1496 PF03358 NADPH-dependent FMN reductase CYA_1500 PF01116 Fructose-bisphosphate aldolase class-II CYA_1503 PF01592 NifU-like N terminal domain CYA_1504 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_1505 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CYA_1507 PF00909 Ammonium Transporter Family CYA_1508 PF00543 Nitrogen regulatory protein P-II CYA_1512 PF00510 Cytochrome c oxidase subunit III CYA_1513 PF00115 Cytochrome C and Quinol oxidase polypeptide I CYA_1514 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CYA_1514 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CYA_1515 PF02628 Cytochrome oxidase assembly protein CYA_1517 PF01040 UbiA prenyltransferase family CYA_1519 PF00163 Ribosomal protein S4/S9 N-terminal domain CYA_1519 PF01479 S4 domain CYA_1520 PF16363 GDP-mannose 4,6 dehydratase CYA_1521 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CYA_1521 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CYA_1523 PF00986 DNA gyrase B subunit, carboxyl terminus CYA_1523 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_1523 PF00204 DNA gyrase B CYA_1523 PF01751 Toprim domain CYA_1524 PF13393 Histidyl-tRNA synthetase CYA_1525 PF05239 PRC-barrel domain CYA_1525 PF01782 RimM N-terminal domain CYA_1526 PF01145 SPFH domain / Band 7 family CYA_1528 PF01494 FAD binding domain CYA_1531 PF01551 Peptidase family M23 CYA_1533 PF01252 Signal peptidase (SPase) II CYA_1537 PF00202 Aminotransferase class-III CYA_1541 PF13545 Crp-like helix-turn-helix domain CYA_1542 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CYA_1543 PF01380 SIS domain CYA_1544 PF13411 MerR HTH family regulatory protein CYA_1547 PF03741 Integral membrane protein TerC family CYA_1548 PF00731 AIR carboxylase CYA_1550 PF00772 DnaB-like helicase N terminal domain CYA_1550 PF14528 LAGLIDADG-like domain CYA_1550 PF03796 DnaB-like helicase C terminal domain CYA_1551 PF01281 Ribosomal protein L9, N-terminal domain CYA_1551 PF03948 Ribosomal protein L9, C-terminal domain CYA_1552 PF12849 PBP superfamily domain CYA_1553 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1554 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1555 PF00005 ABC transporter CYA_1556 PF01728 FtsJ-like methyltransferase CYA_1556 PF01479 S4 domain CYA_1559 PF14306 PUA-like domain CYA_1559 PF01747 ATP-sulfurylase CYA_1563 PF03109 ABC1 family CYA_1567 PF07969 Amidohydrolase family CYA_1569 PF17792 ThiD2 family CYA_1569 PF02581 Thiamine monophosphate synthase CYA_1570 PF00004 ATPase family associated with various cellular activities (AAA) CYA_1570 PF01434 Peptidase family M41 CYA_1570 PF17862 AAA+ lid domain CYA_1573 PF01230 HIT domain CYA_1574 PF02570 Precorrin-8X methylmutase CYA_1576 PF01613 Flavin reductase like domain CYA_1576 PF00753 Metallo-beta-lactamase superfamily CYA_1577 PF16360 GTP-binding GTPase Middle Region CYA_1577 PF01926 50S ribosome-binding GTPase CYA_1577 PF13167 GTP-binding GTPase N-terminal CYA_1587 PF07969 Amidohydrolase family CYA_1588 PF01812 5-formyltetrahydrofolate cyclo-ligase family CYA_1589 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYA_1591 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_1591 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYA_1593 PF00361 Proton-conducting membrane transporter CYA_1593 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYA_1593 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CYA_1594 PF00361 Proton-conducting membrane transporter CYA_1597 PF00266 Aminotransferase class-V CYA_1598 PF02811 PHP domain CYA_1599 PF02254 TrkA-N domain CYA_1599 PF07885 Ion channel CYA_1602 PF00127 Copper binding proteins, plastocyanin/azurin family CYA_1607 PF11910 Cyanobacterial and plant NDH-1 subunit O CYA_1609 PF00005 ABC transporter CYA_1612 PF00936 BMC domain CYA_1613 PF03319 Ethanolamine utilisation protein EutN/carboxysome CYA_1614 PF00101 Ribulose bisphosphate carboxylase, small chain CYA_1619 PF01245 Ribosomal protein L19 CYA_1620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CYA_1621 PF12704 MacB-like periplasmic core domain CYA_1621 PF00005 ABC transporter CYA_1621 PF02687 FtsX-like permease family CYA_1622 PF08544 GHMP kinases C terminal CYA_1622 PF00288 GHMP kinases N terminal domain CYA_1623 PF01219 Prokaryotic diacylglycerol kinase CYA_1624 PF02130 Uncharacterized protein family UPF0054 CYA_1626 PF00005 ABC transporter CYA_1627 PF01551 Peptidase family M23 CYA_1627 PF08525 Opacity-associated protein A N-terminal motif CYA_1627 PF01476 LysM domain CYA_1629 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYA_1630 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CYA_1631 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CYA_1633 PF03099 Biotin/lipoate A/B protein ligase family CYA_1636 PF01048 Phosphorylase superfamily CYA_1638 PF00318 Ribosomal protein S2 CYA_1639 PF00889 Elongation factor TS CYA_1640 PF01979 Amidohydrolase family CYA_1641 PF08331 Domain of unknown function (DUF1730) CYA_1647 PF00712 DNA polymerase III beta subunit, N-terminal domain CYA_1647 PF02767 DNA polymerase III beta subunit, central domain CYA_1647 PF02768 DNA polymerase III beta subunit, C-terminal domain CYA_1650 PF01207 Dihydrouridine synthase (Dus) CYA_1651 PF01084 Ribosomal protein S18 CYA_1652 PF00471 Ribosomal protein L33 CYA_1654 PF12706 Beta-lactamase superfamily domain CYA_1655 PF01521 Iron-sulphur cluster biosynthesis CYA_1656 PF00989 PAS fold CYA_1656 PF00512 His Kinase A (phospho-acceptor) domain CYA_1656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_1656 PF16736 Single Cache-like CYA_1657 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_1657 PF00512 His Kinase A (phospho-acceptor) domain CYA_1657 PF01627 Hpt domain CYA_1657 PF00072 Response regulator receiver domain CYA_1657 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CYA_1657 PF00672 HAMP domain CYA_1658 PF00689 Cation transporting ATPase, C-terminus CYA_1658 PF00690 Cation transporter/ATPase, N-terminus CYA_1659 PF00258 Flavodoxin CYA_1659 PF01613 Flavin reductase like domain CYA_1663 PF00300 Histidine phosphatase superfamily (branch 1) CYA_1665 PF03631 Virulence factor BrkB CYA_1666 PF01300 Telomere recombination CYA_1666 PF03481 Putative GTP-binding controlling metal-binding CYA_1667 PF00731 AIR carboxylase CYA_1669 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYA_1669 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYA_1673 PF02540 NAD synthase CYA_1673 PF00117 Glutamine amidotransferase class-I CYA_1673 PF00958 GMP synthase C terminal domain CYA_1675 PF02527 rRNA small subunit methyltransferase G CYA_1677 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CYA_1678 PF00950 ABC 3 transport family CYA_1679 PF00005 ABC transporter CYA_1680 PF01297 Zinc-uptake complex component A periplasmic CYA_1681 PF02938 GAD domain CYA_1681 PF00152 tRNA synthetases class II (D, K and N) CYA_1681 PF01336 OB-fold nucleic acid binding domain CYA_1683 PF01594 AI-2E family transporter CYA_1686 PF14495 Cytochrome c-550 domain CYA_1687 PF14495 Cytochrome c-550 domain CYA_1689 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CYA_1690 PF04002 RadC-like JAB domain CYA_1691 PF02911 Formyl transferase, C-terminal domain CYA_1691 PF00551 Formyl transferase CYA_1693 PF01769 Divalent cation transporter CYA_1693 PF03448 MgtE intracellular N domain CYA_1693 PF00571 CBS domain CYA_1697 PF00920 Dehydratase family CYA_1698 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CYA_1699 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CYA_1699 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CYA_1701 PF02780 Transketolase, C-terminal domain CYA_1701 PF02779 Transketolase, pyrimidine binding domain CYA_1701 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CYA_1702 PF00291 Pyridoxal-phosphate dependent enzyme CYA_1703 PF08264 Anticodon-binding domain of tRNA CYA_1703 PF00133 tRNA synthetases class I (I, L, M and V) CYA_1703 PF06827 Zinc finger found in FPG and IleRS CYA_1706 PF00557 Metallopeptidase family M24 CYA_1706 PF01321 Creatinase/Prolidase N-terminal domain CYA_1709 PF00155 Aminotransferase class I and II CYA_1712 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CYA_1717 PF01758 Sodium Bile acid symporter family CYA_1719 PF02656 Domain of unknown function (DUF202) CYA_1720 PF16123 Hydroxyacylglutathione hydrolase C-terminus CYA_1720 PF00753 Metallo-beta-lactamase superfamily CYA_1722 PF11127 Protein of unknown function (DUF2892) CYA_1722 PF00581 Rhodanese-like domain CYA_1724 PF01740 STAS domain CYA_1724 PF00916 Sulfate permease family CYA_1725 PF00085 Thioredoxin CYA_1727 PF03099 Biotin/lipoate A/B protein ligase family CYA_1729 PF10397 Adenylosuccinate lyase C-terminus CYA_1729 PF00206 Lyase CYA_1730 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYA_1730 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYA_1732 PF12849 PBP superfamily domain CYA_1733 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1734 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1735 PF00005 ABC transporter CYA_1738 PF03773 Predicted permease CYA_1739 PF00285 Citrate synthase, C-terminal domain CYA_1740 PF05991 YacP-like NYN domain CYA_1741 PF03109 ABC1 family CYA_1745 PF08369 Proto-chlorophyllide reductase 57 kD subunit CYA_1745 PF00148 Nitrogenase component 1 type Oxidoreductase CYA_1747 PF01842 ACT domain CYA_1747 PF13840 ACT domain CYA_1747 PF00696 Amino acid kinase family CYA_1748 PF00124 Photosynthetic reaction centre protein CYA_1749 PF02142 MGS-like domain CYA_1749 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYA_1749 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYA_1755 PF00361 Proton-conducting membrane transporter CYA_1756 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CYA_1758 PF01047 MarR family CYA_1762 PF13732 Domain of unknown function (DUF4162) CYA_1762 PF00005 ABC transporter CYA_1763 PF03461 TRCF domain CYA_1763 PF00271 Helicase conserved C-terminal domain CYA_1763 PF00270 DEAD/DEAH box helicase CYA_1763 PF02559 CarD-like/TRCF domain CYA_1763 PF17757 UvrB interaction domain CYA_1764 PF01654 Cytochrome bd terminal oxidase subunit I CYA_1766 PF02322 Cytochrome bd terminal oxidase subunit II CYA_1767 PF05552 Conserved TM helix CYA_1768 PF00583 Acetyltransferase (GNAT) family CYA_1770 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CYA_1770 PF02222 ATP-grasp domain CYA_1775 PF01746 tRNA (Guanine-1)-methyltransferase CYA_1777 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CYA_1778 PF02357 Transcription termination factor nusG CYA_1778 PF00467 KOW motif CYA_1779 PF00298 Ribosomal protein L11, RNA binding domain CYA_1779 PF03946 Ribosomal protein L11, N-terminal domain CYA_1780 PF00687 Ribosomal protein L1p/L10e family CYA_1782 PF00466 Ribosomal protein L10 CYA_1784 PF16320 Ribosomal protein L7/L12 dimerisation domain CYA_1784 PF00542 Ribosomal protein L7/L12 C-terminal domain CYA_1785 PF02096 60Kd inner membrane protein CYA_1788 PF01040 UbiA prenyltransferase family CYA_1791 PF05378 Hydantoinase/oxoprolinase N-terminal region CYA_1791 PF01968 Hydantoinase/oxoprolinase CYA_1794 PF09367 CpeS-like protein CYA_1795 PF00595 PDZ domain CYA_1795 PF03572 Peptidase family S41 CYA_1796 PF00033 Cytochrome b/b6/petB CYA_1797 PF00032 Cytochrome b(C-terminal)/b6/petD CYA_1798 PF00180 Isocitrate/isopropylmalate dehydrogenase CYA_1806 PF00684 DnaJ central domain CYA_1806 PF01556 DnaJ C terminal domain CYA_1806 PF00226 DnaJ domain CYA_1810 PF03699 Uncharacterised protein family (UPF0182) CYA_1811 PF00124 Photosynthetic reaction centre protein CYA_1812 PF05496 Holliday junction DNA helicase RuvB P-loop domain CYA_1812 PF05491 RuvB C-terminal winged helix domain CYA_1812 PF17864 RuvB AAA lid domain CYA_1814 PF00427 Phycobilisome Linker polypeptide CYA_1814 PF00502 Phycobilisome protein CYA_1817 PF07690 Major Facilitator Superfamily CYA_1820 PF00682 HMGL-like CYA_1823 PF00148 Nitrogenase component 1 type Oxidoreductase CYA_1824 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CYA_1825 PF04324 BFD-like [2Fe-2S] binding domain CYA_1825 PF01106 NifU-like domain CYA_1825 PF01592 NifU-like N terminal domain CYA_1827 PF12838 4Fe-4S dicluster domain CYA_1828 PF04055 Radical SAM superfamily CYA_1828 PF02579 Dinitrogenase iron-molybdenum cofactor CYA_1831 PF00210 Ferritin-like domain CYA_1835 PF00148 Nitrogenase component 1 type Oxidoreductase CYA_1836 PF02579 Dinitrogenase iron-molybdenum cofactor CYA_1837 PF03270 Protein of unknown function, DUF269 CYA_1839 PF03206 Nitrogen fixation protein NifW CYA_1844 PF03459 TOBE domain CYA_1846 PF00005 ABC transporter CYA_1846 PF08402 TOBE domain CYA_1847 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYA_1847 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYA_1848 PF03699 Uncharacterised protein family (UPF0182) CYA_1849 PF00124 Photosynthetic reaction centre protein CYA_1850 PF05496 Holliday junction DNA helicase RuvB P-loop domain CYA_1850 PF05491 RuvB C-terminal winged helix domain CYA_1850 PF17864 RuvB AAA lid domain CYA_1851 PF00427 Phycobilisome Linker polypeptide CYA_1851 PF00502 Phycobilisome protein CYA_1855 PF01497 Periplasmic binding protein CYA_1857 PF01593 Flavin containing amine oxidoreductase CYA_1858 PF00528 Binding-protein-dependent transport system inner membrane component CYA_1859 PF08402 TOBE domain CYA_1859 PF00005 ABC transporter CYA_1862 PF01765 Ribosome recycling factor CYA_1863 PF01743 Poly A polymerase head domain CYA_1863 PF01966 HD domain CYA_1863 PF12627 Probable RNA and SrmB- binding site of polymerase A CYA_1864 PF13181 Tetratricopeptide repeat CYA_1864 PF01435 Peptidase family M48 CYA_1866 PF01761 3-dehydroquinate synthase CYA_1867 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYA_1867 PF02774 Semialdehyde dehydrogenase, dimerisation domain CYA_1869 PF02535 ZIP Zinc transporter CYA_1875 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CYA_1875 PF01565 FAD binding domain CYA_1876 PF01225 Mur ligase family, catalytic domain CYA_1876 PF02875 Mur ligase family, glutamate ligase domain CYA_1876 PF08245 Mur ligase middle domain CYA_1877 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CYA_1879 PF01370 NAD dependent epimerase/dehydratase family CYA_1880 PF00005 ABC transporter CYA_1881 PF01411 tRNA synthetases class II (A) CYA_1881 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYA_1881 PF02272 DHHA1 domain CYA_1882 PF00805 Pentapeptide repeats (8 copies) CYA_1882 PF00069 Protein kinase domain CYA_1885 PF00155 Aminotransferase class I and II CYA_1888 PF00011 Hsp20/alpha crystallin family CYA_1892 PF00486 Transcriptional regulatory protein, C terminal CYA_1892 PF00072 Response regulator receiver domain CYA_1893 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYA_1893 PF00005 ABC transporter CYA_1894 PF08495 FIST N domain CYA_1894 PF10442 FIST C domain CYA_1895 PF08525 Opacity-associated protein A N-terminal motif CYA_1895 PF01476 LysM domain CYA_1895 PF01551 Peptidase family M23 CYA_1896 PF01406 tRNA synthetases class I (C) catalytic domain CYA_1896 PF09190 DALR domain CYA_1899 PF02769 AIR synthase related protein, C-terminal domain CYA_1899 PF00586 AIR synthase related protein, N-terminal domain CYA_1900 PF06745 KaiC CYA_1901 PF07689 KaiB domain CYA_1902 PF07688 KaiA C-terminal domain CYA_1903 PF01156 Inosine-uridine preferring nucleoside hydrolase CYA_1904 PF01066 CDP-alcohol phosphatidyltransferase CYA_1905 PF02075 Crossover junction endodeoxyribonuclease RuvC CYA_1906 PF00004 ATPase family associated with various cellular activities (AAA) CYA_1906 PF02190 ATP-dependent protease La (LON) substrate-binding domain CYA_1906 PF05362 Lon protease (S16) C-terminal proteolytic domain CYA_1908 PF02142 MGS-like domain CYA_1908 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYA_1908 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYA_1915 PF00361 Proton-conducting membrane transporter CYA_1917 PF00581 Rhodanese-like domain CYA_1918 PF00857 Isochorismatase family CYA_1920 PF00005 ABC transporter CYA_1921 PF12399 Branched-chain amino acid ATP-binding cassette transporter CYA_1921 PF00005 ABC transporter CYA_1923 PF02653 Branched-chain amino acid transport system / permease component CYA_1925 PF00326 Prolyl oligopeptidase family CYA_1926 PF01551 Peptidase family M23 CYA_1926 PF10145 Phage-related minor tail protein CYA_1926 PF01464 Transglycosylase SLT domain CYA_1929 PF00226 DnaJ domain CYA_1929 PF01556 DnaJ C terminal domain CYA_1929 PF00684 DnaJ central domain CYA_1932 PF01241 Photosystem I psaG / psaK CYA_1936 PF17863 AAA lid domain CYA_1936 PF01078 Magnesium chelatase, subunit ChlI CYA_1942 PF00149 Calcineurin-like phosphoesterase CYA_1944 PF02824 TGS domain CYA_1944 PF13291 ACT domain CYA_1944 PF04607 Region found in RelA / SpoT proteins CYA_1945 PF01926 50S ribosome-binding GTPase CYA_1946 PF00111 2Fe-2S iron-sulfur cluster binding domain CYA_1947 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYA_1947 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYA_1948 PF03109 ABC1 family CYA_1949 PF00578 AhpC/TSA family CYA_1953 PF00588 SpoU rRNA Methylase family CYA_1955 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CYA_1957 PF07977 FabA-like domain CYA_1959 PF01385 Probable transposase CYA_1959 PF12323 Helix-turn-helix domain CYA_1959 PF07282 Putative transposase DNA-binding domain CYA_1960 PF00132 Bacterial transferase hexapeptide (six repeats) CYA_1960 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CYA_1963 PF13378 Enolase C-terminal domain-like CYA_1963 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CYA_1964 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYA_1964 PF00205 Thiamine pyrophosphate enzyme, central domain CYA_1964 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYA_1965 PF00437 Type II/IV secretion system protein CYA_1965 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CYA_1966 PF00437 Type II/IV secretion system protein CYA_1967 PF00482 Type II secretion system (T2SS), protein F CYA_1968 PF00207 Alpha-2-macroglobulin family CYA_1968 PF01835 MG2 domain CYA_1968 PF07703 Alpha-2-macroglobulin bait region domain CYA_1969 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYA_1969 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYA_1969 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYA_1969 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYA_1971 PF12697 Alpha/beta hydrolase family CYA_1974 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CYA_1974 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CYA_1975 PF02609 Exonuclease VII small subunit CYA_1976 PF13742 OB-fold nucleic acid binding domain CYA_1976 PF02601 Exonuclease VII, large subunit CYA_1977 PF12323 Helix-turn-helix domain CYA_1977 PF01385 Probable transposase CYA_1977 PF07282 Putative transposase DNA-binding domain CYA_1981 PF09363 XFP C-terminal domain CYA_1981 PF09364 XFP N-terminal domain CYA_1981 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CYA_1982 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CYA_1982 PF00953 Glycosyl transferase family 4 CYA_1988 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYA_1990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYA_1990 PF04324 BFD-like [2Fe-2S] binding domain CYA_1991 PF01389 OmpA-like transmembrane domain CYA_1991 PF00691 OmpA family CYA_1994 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CYA_1995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CYA_1996 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CYA_1999 PF04193 PQ loop repeat CYA_2009 PF03819 MazG nucleotide pyrophosphohydrolase domain CYA_2013 PF00271 Helicase conserved C-terminal domain CYA_2013 PF00270 DEAD/DEAH box helicase CYA_2013 PF17191 RecG wedge domain CYA_2014 PF07465 Photosystem I protein M (PsaM) CYA_2015 PF00464 Serine hydroxymethyltransferase CYA_2016 PF00953 Glycosyl transferase family 4 CYA_2018 PF00156 Phosphoribosyl transferase domain CYA_2021 PF01078 Magnesium chelatase, subunit ChlI CYA_2021 PF13335 Magnesium chelatase, subunit ChlI C-terminal CYA_2022 PF02463 RecF/RecN/SMC N terminal domain CYA_2027 PF00072 Response regulator receiver domain CYA_2027 PF00486 Transcriptional regulatory protein, C terminal CYA_2030 PF03544 Gram-negative bacterial TonB protein C-terminal CYA_2031 PF07715 TonB-dependent Receptor Plug Domain CYA_2031 PF00593 TonB dependent receptor CYA_2032 PF00005 ABC transporter CYA_2033 PF01032 FecCD transport family CYA_2035 PF05192 MutS domain III CYA_2035 PF05188 MutS domain II CYA_2035 PF01624 MutS domain I CYA_2035 PF00488 MutS domain V CYA_2035 PF05190 MutS family domain IV CYA_2037 PF04542 Sigma-70 region 2 CYA_2037 PF04539 Sigma-70 region 3 CYA_2037 PF04545 Sigma-70, region 4 CYA_2037 PF00140 Sigma-70 factor, region 1.2 CYA_2038 PF03023 Lipid II flippase MurJ CYA_2040 PF03130 PBS lyase HEAT-like repeat CYA_2041 PF01383 CpcD/allophycocyanin linker domain CYA_2041 PF00427 Phycobilisome Linker polypeptide CYA_2042 PF00502 Phycobilisome protein CYA_2043 PF00502 Phycobilisome protein CYA_2044 PF06206 CpeT/CpcT family (DUF1001) CYA_2045 PF01409 tRNA synthetases class II core domain (F) CYA_2045 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CYA_2048 PF00005 ABC transporter CYA_2049 PF12706 Beta-lactamase superfamily domain CYA_2049 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CYA_2050 PF00535 Glycosyl transferase family 2 CYA_2050 PF07238 PilZ domain CYA_2050 PF03170 Bacterial cellulose synthase subunit CYA_2051 PF01016 Ribosomal L27 protein CYA_2052 PF00829 Ribosomal prokaryotic L21 protein CYA_2055 PF01556 DnaJ C terminal domain CYA_2055 PF00226 DnaJ domain CYA_2056 PF06150 ChaB CYA_2057 PF04389 Peptidase family M28 CYA_2058 PF13419 Haloacid dehalogenase-like hydrolase CYA_2059 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYA_2059 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYA_2061 PF01523 Putative modulator of DNA gyrase CYA_2062 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CYA_2062 PF02806 Alpha amylase, C-terminal all-beta domain CYA_2062 PF00128 Alpha amylase, catalytic domain CYA_2063 PF07282 Putative transposase DNA-binding domain CYA_2063 PF01385 Probable transposase CYA_2063 PF12323 Helix-turn-helix domain CYA_2065 PF02416 mttA/Hcf106 family CYA_2067 PF01062 Bestrophin, RFP-TM, chloride channel CYA_2069 PF10664 Cyanobacterial and plastid NDH-1 subunit M CYA_2071 PF08323 Starch synthase catalytic domain CYA_2071 PF00534 Glycosyl transferases group 1 CYA_2072 PF03065 Glycosyl hydrolase family 57 CYA_2072 PF09210 Domain of unknown function (DUF1957) CYA_2073 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYA_2073 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYA_2073 PF00205 Thiamine pyrophosphate enzyme, central domain CYA_2083 PF01740 STAS domain CYA_2083 PF00916 Sulfate permease family CYA_2087 PF02405 Permease MlaE CYA_2088 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYA_2096 PF00579 tRNA synthetases class I (W and Y) CYA_2096 PF01479 S4 domain CYA_2097 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) CYA_2098 PF02347 Glycine cleavage system P-protein CYA_2100 PF01425 Amidase CYA_2104 PF01039 Carboxyl transferase domain CYA_2104 PF17848 Acetyl-coA carboxylase zinc finger domain CYA_2105 PF01740 STAS domain CYA_2107 PF01209 ubiE/COQ5 methyltransferase family CYA_2109 PF13416 Bacterial extracellular solute-binding protein CYA_2111 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2112 PF00231 ATP synthase CYA_2113 PF00306 ATP synthase alpha/beta chain, C terminal domain CYA_2113 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYA_2113 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYA_2114 PF00213 ATP synthase delta (OSCP) subunit CYA_2115 PF00430 ATP synthase B/B' CF(0) CYA_2117 PF00137 ATP synthase subunit C CYA_2119 PF00119 ATP synthase A chain CYA_2120 PF12966 N-ATPase, AtpR subunit CYA_2123 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CYA_2123 PF01676 Metalloenzyme superfamily CYA_2125 PF00210 Ferritin-like domain CYA_2126 PF12631 MnmE helical domain CYA_2126 PF01926 50S ribosome-binding GTPase CYA_2126 PF10396 GTP-binding protein TrmE N-terminus CYA_2127 PF11897 Protein of unknown function (DUF3417) CYA_2127 PF00343 Carbohydrate phosphorylase CYA_2130 PF10369 Small subunit of acetolactate synthase CYA_2134 PF02685 Glucokinase CYA_2136 PF00425 chorismate binding enzyme CYA_2136 PF04715 Anthranilate synthase component I, N terminal region CYA_2138 PF01040 UbiA prenyltransferase family CYA_2142 PF00206 Lyase CYA_2142 PF10415 Fumarase C C-terminus CYA_2144 PF05198 Translation initiation factor IF-3, N-terminal domain CYA_2144 PF00707 Translation initiation factor IF-3, C-terminal domain CYA_2145 PF00578 AhpC/TSA family CYA_2146 PF03793 PASTA domain CYA_2146 PF00069 Protein kinase domain CYA_2147 PF01926 50S ribosome-binding GTPase CYA_2147 PF12631 MnmE helical domain CYA_2147 PF10396 GTP-binding protein TrmE N-terminus CYA_2150 PF02469 Fasciclin domain CYA_2152 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CYA_2155 PF01584 CheW-like domain CYA_2155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2155 PF07194 P2 response regulator binding domain CYA_2155 PF01627 Hpt domain CYA_2155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2155 PF02895 Signal transducing histidine kinase, homodimeric domain CYA_2155 PF01584 CheW-like domain CYA_2155 PF02895 Signal transducing histidine kinase, homodimeric domain CYA_2155 PF07194 P2 response regulator binding domain CYA_2155 PF01627 Hpt domain CYA_2156 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CYA_2156 PF01590 GAF domain CYA_2161 PF00072 Response regulator receiver domain CYA_2162 PF00072 Response regulator receiver domain CYA_2162 PF14332 Domain of unknown function (DUF4388) CYA_2163 PF00293 NUDIX domain CYA_2169 PF14528 LAGLIDADG-like domain CYA_2169 PF03796 DnaB-like helicase C terminal domain CYA_2169 PF00772 DnaB-like helicase N terminal domain CYA_2170 PF00571 CBS domain CYA_2170 PF02163 Peptidase family M50 CYA_2171 PF00675 Insulinase (Peptidase family M16) CYA_2171 PF05193 Peptidase M16 inactive domain CYA_2174 PF00583 Acetyltransferase (GNAT) family CYA_2176 PF11264 Thylakoid formation protein CYA_2177 PF00696 Amino acid kinase family CYA_2177 PF01472 PUA domain CYA_2180 PF01177 Asp/Glu/Hydantoin racemase CYA_2181 PF01520 N-acetylmuramoyl-L-alanine amidase CYA_2183 PF00686 Starch binding domain CYA_2183 PF02806 Alpha amylase, C-terminal all-beta domain CYA_2183 PF00128 Alpha amylase, catalytic domain CYA_2184 PF00989 PAS fold CYA_2184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2184 PF00512 His Kinase A (phospho-acceptor) domain CYA_2184 PF11808 Phosphate regulon sensor protein PhoR CYA_2186 PF00793 DAHP synthetase I family CYA_2190 PF01458 Uncharacterized protein family (UPF0051) CYA_2192 PF01741 Large-conductance mechanosensitive channel, MscL CYA_2193 PF00005 ABC transporter CYA_2194 PF01458 Uncharacterized protein family (UPF0051) CYA_2196 PF01730 UreF CYA_2199 PF01728 FtsJ-like methyltransferase CYA_2199 PF18125 RlmM ferredoxin-like domain CYA_2201 PF00694 Aconitase C-terminal domain CYA_2206 PF00224 Pyruvate kinase, barrel domain CYA_2206 PF00391 PEP-utilising enzyme, mobile domain CYA_2206 PF02887 Pyruvate kinase, alpha/beta domain CYA_2214 PF00830 Ribosomal L28 family CYA_2216 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CYA_2216 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CYA_2218 PF01138 3' exoribonuclease family, domain 1 CYA_2218 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CYA_2218 PF03725 3' exoribonuclease family, domain 2 CYA_2218 PF00575 S1 RNA binding domain CYA_2218 PF00013 KH domain CYA_2224 PF00005 ABC transporter CYA_2225 PF01383 CpcD/allophycocyanin linker domain CYA_2226 PF00502 Phycobilisome protein CYA_2227 PF00502 Phycobilisome protein CYA_2229 PF13180 PDZ domain CYA_2230 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CYA_2231 PF00005 ABC transporter CYA_2231 PF00571 CBS domain CYA_2232 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2233 PF04542 Sigma-70 region 2 CYA_2233 PF04539 Sigma-70 region 3 CYA_2233 PF04545 Sigma-70, region 4 CYA_2235 PF04294 VanW like protein CYA_2239 PF00132 Bacterial transferase hexapeptide (six repeats) CYA_2240 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CYA_2243 PF01161 Phosphatidylethanolamine-binding protein CYA_2247 PF01523 Putative modulator of DNA gyrase CYA_2252 PF01523 Putative modulator of DNA gyrase CYA_2253 PF03167 Uracil DNA glycosylase superfamily CYA_2254 PF08241 Methyltransferase domain CYA_2257 PF00294 pfkB family carbohydrate kinase CYA_2258 PF01906 Putative heavy-metal-binding CYA_2259 PF01709 Transcriptional regulator CYA_2262 PF00069 Protein kinase domain CYA_2264 PF01513 ATP-NAD kinase CYA_2266 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CYA_2270 PF02237 Biotin protein ligase C terminal domain CYA_2270 PF03099 Biotin/lipoate A/B protein ligase family CYA_2270 PF08279 HTH domain CYA_2272 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CYA_2275 PF10502 Signal peptidase, peptidase S26 CYA_2276 PF00348 Polyprenyl synthetase CYA_2277 PF02583 Metal-sensitive transcriptional repressor CYA_2279 PF00886 Ribosomal protein S16 CYA_2282 PF00977 Histidine biosynthesis protein CYA_2283 PF00459 Inositol monophosphatase family CYA_2285 PF04012 PspA/IM30 family CYA_2291 PF03190 Protein of unknown function, DUF255 CYA_2292 PF00583 Acetyltransferase (GNAT) family CYA_2296 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYA_2297 PF01795 MraW methylase family CYA_2298 PF00196 Bacterial regulatory proteins, luxR family CYA_2298 PF00072 Response regulator receiver domain CYA_2304 PF07995 Glucose / Sorbosone dehydrogenase CYA_2306 PF17137 Domain of unknown function (DUF5110) CYA_2306 PF01055 Glycosyl hydrolases family 31 CYA_2306 PF13802 Galactose mutarotase-like CYA_2306 PF16338 Domain of unknown function (DUF4968) CYA_2315 PF00005 ABC transporter CYA_2316 PF00486 Transcriptional regulatory protein, C terminal CYA_2316 PF00072 Response regulator receiver domain CYA_2323 PF18693 TRAM domain CYA_2323 PF00919 Uncharacterized protein family UPF0004 CYA_2323 PF04055 Radical SAM superfamily CYA_2324 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CYA_2325 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CYA_2326 PF02779 Transketolase, pyrimidine binding domain CYA_2326 PF00364 Biotin-requiring enzyme CYA_2326 PF02780 Transketolase, C-terminal domain CYA_2328 PF01266 FAD dependent oxidoreductase CYA_2329 PF08275 DNA primase catalytic core, N-terminal domain CYA_2329 PF01807 CHC2 zinc finger CYA_2329 PF10410 DnaB-helicase binding domain of primase CYA_2333 PF00069 Protein kinase domain CYA_2333 PF00805 Pentapeptide repeats (8 copies) CYA_2334 PF04234 CopC domain CYA_2335 PF14251 Domain of unknown function (DUF4346) CYA_2336 PF00072 Response regulator receiver domain CYA_2338 PF04760 Translation initiation factor IF-2, N-terminal region CYA_2338 PF11987 Translation-initiation factor 2 CYA_2338 PF00009 Elongation factor Tu GTP binding domain CYA_2339 PF04073 Aminoacyl-tRNA editing domain CYA_2339 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYA_2339 PF03129 Anticodon binding domain CYA_2346 PF02780 Transketolase, C-terminal domain CYA_2346 PF02779 Transketolase, pyrimidine binding domain CYA_2346 PF00456 Transketolase, thiamine diphosphate binding domain CYA_2347 PF04055 Radical SAM superfamily CYA_2347 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CYA_2348 PF00440 Bacterial regulatory proteins, tetR family CYA_2351 PF00072 Response regulator receiver domain CYA_2351 PF00196 Bacterial regulatory proteins, luxR family CYA_2352 PF00512 His Kinase A (phospho-acceptor) domain CYA_2352 PF00989 PAS fold CYA_2352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2353 PF00106 short chain dehydrogenase CYA_2356 PF08546 Ketopantoate reductase PanE/ApbA C terminal CYA_2356 PF02558 Ketopantoate reductase PanE/ApbA CYA_2357 PF08041 PetM family of cytochrome b6f complex subunit 7 CYA_2358 PF00124 Photosynthetic reaction centre protein CYA_2359 PF00421 Photosystem II protein CYA_2360 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYA_2360 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYA_2362 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2365 PF00698 Acyl transferase domain CYA_2366 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CYA_2366 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CYA_2367 PF02504 Fatty acid synthesis protein CYA_2369 PF00218 Indole-3-glycerol phosphate synthase CYA_2370 PF17275 Family of unknown function (DUF5340) CYA_2372 PF00403 Heavy-metal-associated domain CYA_2373 PF01903 CbiX CYA_2376 PF01300 Telomere recombination CYA_2378 PF01926 50S ribosome-binding GTPase CYA_2378 PF01018 GTP1/OBG CYA_2379 PF00575 S1 RNA binding domain CYA_2382 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CYA_2383 PF00106 short chain dehydrogenase CYA_2385 PF00148 Nitrogenase component 1 type Oxidoreductase CYA_2386 PF00202 Aminotransferase class-III CYA_2387 PF04551 GcpE protein CYA_2389 PF00436 Single-strand binding protein family CYA_2390 PF02571 Precorrin-6x reductase CbiJ/CobK CYA_2391 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CYA_2391 PF00361 Proton-conducting membrane transporter CYA_2391 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYA_2394 PF00158 Sigma-54 interaction domain CYA_2394 PF02954 Bacterial regulatory protein, Fis family CYA_2394 PF00072 Response regulator receiver domain CYA_2395 PF01070 FMN-dependent dehydrogenase CYA_2401 PF00082 Subtilase family CYA_2405 PF00211 Adenylate and Guanylate cyclase catalytic domain CYA_2407 PF01687 Riboflavin kinase CYA_2407 PF06574 FAD synthetase CYA_2408 PF02654 Cobalamin-5-phosphate synthase CYA_2410 PF00140 Sigma-70 factor, region 1.2 CYA_2410 PF04542 Sigma-70 region 2 CYA_2410 PF04545 Sigma-70, region 4 CYA_2410 PF04539 Sigma-70 region 3 CYA_2411 PF02310 B12 binding domain CYA_2411 PF02965 Vitamin B12 dependent methionine synthase, activation domain CYA_2411 PF00809 Pterin binding enzyme CYA_2411 PF02574 Homocysteine S-methyltransferase CYA_2411 PF02607 B12 binding domain CYA_2412 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2413 PF00561 alpha/beta hydrolase fold CYA_2417 PF03466 LysR substrate binding domain CYA_2417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYA_2420 PF02618 YceG-like family CYA_2421 PF00696 Amino acid kinase family CYA_2423 PF01169 Uncharacterized protein family UPF0016 CYA_2427 PF01788 PsbJ CYA_2428 PF02419 PsbL protein CYA_2429 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits CYA_2430 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit CYA_2430 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits CYA_2432 PF02541 Ppx/GppA phosphatase family CYA_2433 PF03129 Anticodon binding domain CYA_2433 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYA_2433 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYA_2435 PF03069 Acetamidase/Formamidase family CYA_2436 PF02446 4-alpha-glucanotransferase CYA_2438 PF00156 Phosphoribosyl transferase domain CYA_2441 PF01047 MarR family CYA_2445 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CYA_2445 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CYA_2446 PF06838 Methionine gamma-lyase CYA_2454 PF00291 Pyridoxal-phosphate dependent enzyme CYA_2455 PF00425 chorismate binding enzyme CYA_2456 PF01040 UbiA prenyltransferase family CYA_2460 PF00155 Aminotransferase class I and II CYA_2461 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CYA_2461 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CYA_2464 PF00210 Ferritin-like domain CYA_2465 PF03193 RsgA GTPase CYA_2466 PF00535 Glycosyl transferase family 2 CYA_2467 PF01430 Hsp33 protein CYA_2470 PF02597 ThiS family CYA_2471 PF00899 ThiF family CYA_2471 PF00581 Rhodanese-like domain CYA_2473 PF00925 GTP cyclohydrolase II CYA_2473 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CYA_2474 PF00392 Bacterial regulatory proteins, gntR family CYA_2477 PF02503 Polyphosphate kinase middle domain CYA_2477 PF13089 Polyphosphate kinase N-terminal domain CYA_2477 PF17941 Polyphosphate kinase C-terminal domain 1 CYA_2477 PF13090 Polyphosphate kinase C-terminal domain 2 CYA_2479 PF02653 Branched-chain amino acid transport system / permease component CYA_2481 PF00884 Sulfatase CYA_2481 PF16347 Domain of unknown function (DUF4976) CYA_2485 PF13419 Haloacid dehalogenase-like hydrolase CYA_2489 PF02548 Ketopantoate hydroxymethyltransferase CYA_2492 PF05996 Ferredoxin-dependent bilin reductase CYA_2495 PF13393 Histidyl-tRNA synthetase CYA_2495 PF03129 Anticodon binding domain CYA_2501 PF00483 Nucleotidyl transferase CYA_2501 PF01050 Mannose-6-phosphate isomerase CYA_2507 PF02617 ATP-dependent Clp protease adaptor protein ClpS CYA_2510 PF00474 Sodium:solute symporter family CYA_2512 PF02481 DNA recombination-mediator protein A CYA_2512 PF17782 DprA winged helix domain CYA_2513 PF00977 Histidine biosynthesis protein CYA_2514 PF01546 Peptidase family M20/M25/M40 CYA_2514 PF07687 Peptidase dimerisation domain CYA_2519 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system CYA_2521 PF00223 Photosystem I psaA/psaB protein CYA_2522 PF00223 Photosystem I psaA/psaB protein CYA_2527 PF00883 Cytosol aminopeptidase family, catalytic domain CYA_2527 PF02789 Cytosol aminopeptidase family, N-terminal domain CYA_2529 PF00950 ABC 3 transport family CYA_2531 PF00005 ABC transporter CYA_2532 PF01297 Zinc-uptake complex component A periplasmic CYA_2532 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CYA_2533 PF02657 Fe-S metabolism associated domain CYA_2537 PF01139 tRNA-splicing ligase RtcB CYA_2538 PF13640 2OG-Fe(II) oxygenase superfamily CYA_2539 PF09827 CRISPR associated protein Cas2 CYA_2553 PF00512 His Kinase A (phospho-acceptor) domain CYA_2553 PF00989 PAS fold CYA_2553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2553 PF16736 Single Cache-like CYA_2554 PF00113 Enolase, C-terminal TIM barrel domain CYA_2554 PF03952 Enolase, N-terminal domain CYA_2555 PF00326 Prolyl oligopeptidase family CYA_2555 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CYA_2556 PF00582 Universal stress protein family CYA_2557 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain CYA_2558 PF06596 Photosystem II reaction centre X protein (PsbX) CYA_2560 PF03040 CemA family CYA_2563 PF00924 Mechanosensitive ion channel CYA_2563 PF12795 Mechanosensitive ion channel porin domain CYA_2563 PF12794 Mechanosensitive ion channel inner membrane domain 1 CYA_2564 PF00271 Helicase conserved C-terminal domain CYA_2564 PF04851 Type III restriction enzyme, res subunit CYA_2564 PF02151 UvrB/uvrC motif CYA_2564 PF17757 UvrB interaction domain CYA_2564 PF12344 Ultra-violet resistance protein B CYA_2566 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYA_2566 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYA_2568 PF06206 CpeT/CpcT family (DUF1001) CYA_2569 PF16736 Single Cache-like CYA_2569 PF00989 PAS fold CYA_2569 PF00512 His Kinase A (phospho-acceptor) domain CYA_2569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2570 PF04055 Radical SAM superfamily CYA_2571 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2575 PF00512 His Kinase A (phospho-acceptor) domain CYA_2575 PF00672 HAMP domain CYA_2575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2578 PF10716 NADH dehydrogenase transmembrane subunit CYA_2579 PF00037 4Fe-4S binding domain CYA_2579 PF11953 Domain of unknown function (DUF3470) CYA_2581 PF07282 Putative transposase DNA-binding domain CYA_2581 PF01385 Probable transposase CYA_2581 PF12323 Helix-turn-helix domain CYA_2582 PF01713 Smr domain CYA_2582 PF00488 MutS domain V CYA_2585 PF00699 Urease beta subunit CYA_2590 PF08220 DeoR-like helix-turn-helix domain CYA_2590 PF01628 HrcA protein C terminal domain CYA_2591 PF01171 PP-loop family CYA_2592 PF08486 Stage II sporulation protein CYA_2593 PF07690 Major Facilitator Superfamily CYA_2594 PF01809 Putative membrane protein insertion efficiency factor CYA_2595 PF01042 Endoribonuclease L-PSP CYA_2600 PF06596 Photosystem II reaction centre X protein (PsbX) CYA_2601 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain CYA_2604 PF00421 Photosystem II protein CYA_2605 PF00258 Flavodoxin CYA_2606 PF00421 Photosystem II protein CYA_2608 PF09375 Imelysin CYA_2611 PF13640 2OG-Fe(II) oxygenase superfamily CYA_2611 PF18331 PKHD-type hydroxylase C-terminal domain CYA_2613 PF09335 SNARE associated Golgi protein CYA_2614 PF13649 Methyltransferase domain CYA_2617 PF07884 Vitamin K epoxide reductase family CYA_2618 PF00990 Diguanylate cyclase, GGDEF domain CYA_2618 PF00072 Response regulator receiver domain CYA_2619 PF03437 BtpA family CYA_2620 PF01180 Dihydroorotate dehydrogenase CYA_2621 PF13458 Periplasmic binding protein CYA_2622 PF00005 ABC transporter CYA_2622 PF12399 Branched-chain amino acid ATP-binding cassette transporter CYA_2623 PF00005 ABC transporter CYA_2624 PF02463 RecF/RecN/SMC N terminal domain CYA_2626 PF00475 Imidazoleglycerol-phosphate dehydratase CYA_2627 PF00849 RNA pseudouridylate synthase CYA_2628 PF16124 RecQ zinc-binding CYA_2628 PF00270 DEAD/DEAH box helicase CYA_2628 PF00271 Helicase conserved C-terminal domain CYA_2629 PF00933 Glycosyl hydrolase family 3 N terminal domain CYA_2630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CYA_2635 PF00140 Sigma-70 factor, region 1.2 CYA_2635 PF04542 Sigma-70 region 2 CYA_2635 PF04539 Sigma-70 region 3 CYA_2635 PF04545 Sigma-70, region 4 CYA_2636 PF12323 Helix-turn-helix domain CYA_2636 PF07282 Putative transposase DNA-binding domain CYA_2636 PF01385 Probable transposase CYA_2642 PF03092 BT1 family CYA_2643 PF03725 3' exoribonuclease family, domain 2 CYA_2643 PF01138 3' exoribonuclease family, domain 1 CYA_2644 PF00072 Response regulator receiver domain CYA_2644 PF00486 Transcriptional regulatory protein, C terminal CYA_2645 PF00677 Lumazine binding domain CYA_2646 PF01202 Shikimate kinase CYA_2647 PF00124 Photosynthetic reaction centre protein CYA_2648 PF00534 Glycosyl transferases group 1 CYA_2648 PF08323 Starch synthase catalytic domain CYA_2653 PF00271 Helicase conserved C-terminal domain CYA_2653 PF00270 DEAD/DEAH box helicase CYA_2653 PF08148 DSHCT (NUC185) domain CYA_2654 PF00591 Glycosyl transferase family, a/b domain CYA_2654 PF02885 Glycosyl transferase family, helical bundle domain CYA_2654 PF00117 Glutamine amidotransferase class-I CYA_2658 PF04055 Radical SAM superfamily CYA_2658 PF06968 Biotin and Thiamin Synthesis associated domain CYA_2659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2659 PF00672 HAMP domain CYA_2659 PF00512 His Kinase A (phospho-acceptor) domain CYA_2659 PF00989 PAS fold CYA_2662 PF03471 Transporter associated domain CYA_2662 PF01595 Cyclin M transmembrane N-terminal domain CYA_2662 PF00571 CBS domain CYA_2663 PF02224 Cytidylate kinase CYA_2663 PF02569 Pantoate-beta-alanine ligase CYA_2664 PF02529 Cytochrome B6-F complex subunit 5 CYA_2666 PF13193 AMP-binding enzyme C-terminal domain CYA_2666 PF00501 AMP-binding enzyme CYA_2670 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CYA_2670 PF00056 lactate/malate dehydrogenase, NAD binding domain CYA_2671 PF02390 Putative methyltransferase CYA_2675 PF00459 Inositol monophosphatase family CYA_2678 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CYA_2678 PF07685 CobB/CobQ-like glutamine amidotransferase domain CYA_2679 PF16363 GDP-mannose 4,6 dehydratase CYA_2680 PF03091 CutA1 divalent ion tolerance protein CYA_2681 PF01467 Cytidylyltransferase-like CYA_2683 PF02374 Anion-transporting ATPase CYA_2683 PF17886 HSP20-like domain found in ArsA CYA_2686 PF01134 Glucose inhibited division protein A CYA_2688 PF00871 Acetokinase family CYA_2696 PF04025 Domain of unknown function (DUF370) CYA_2697 PF00625 Guanylate kinase CYA_2699 PF00072 Response regulator receiver domain CYA_2699 PF00486 Transcriptional regulatory protein, C terminal CYA_2703 PF02915 Rubrerythrin CYA_2704 PF01493 GXGXG motif CYA_2704 PF00310 Glutamine amidotransferases class-II CYA_2704 PF04898 Glutamate synthase central domain CYA_2704 PF01645 Conserved region in glutamate synthase CYA_2708 PF00005 ABC transporter CYA_2713 PF08241 Methyltransferase domain CYA_2713 PF12697 Alpha/beta hydrolase family CYA_2714 PF13185 GAF domain CYA_2714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2714 PF07730 Histidine kinase CYA_2714 PF13492 GAF domain CYA_2715 PF00749 tRNA synthetases class I (E and Q), catalytic domain CYA_2727 PF00486 Transcriptional regulatory protein, C terminal CYA_2727 PF00072 Response regulator receiver domain CYA_2729 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CYA_2729 PF08501 Shikimate dehydrogenase substrate binding domain CYA_2732 PF03485 Arginyl tRNA synthetase N terminal domain CYA_2732 PF00750 tRNA synthetases class I (R) CYA_2732 PF05746 DALR anticodon binding domain CYA_2734 PF01012 Electron transfer flavoprotein domain CYA_2735 PF00766 Electron transfer flavoprotein FAD-binding domain CYA_2735 PF01012 Electron transfer flavoprotein domain CYA_2736 PF02325 YGGT family CYA_2737 PF00072 Response regulator receiver domain CYA_2738 PF00072 Response regulator receiver domain CYA_2739 PF00072 Response regulator receiver domain CYA_2739 PF00486 Transcriptional regulatory protein, C terminal CYA_2741 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CYA_2741 PF01590 GAF domain CYA_2742 PF01627 Hpt domain CYA_2742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2742 PF01584 CheW-like domain CYA_2742 PF09078 CheY binding CYA_2742 PF02895 Signal transducing histidine kinase, homodimeric domain CYA_2742 PF09078 CheY binding CYA_2742 PF01584 CheW-like domain CYA_2742 PF01627 Hpt domain CYA_2742 PF02895 Signal transducing histidine kinase, homodimeric domain CYA_2744 PF00795 Carbon-nitrogen hydrolase CYA_2746 PF05175 Methyltransferase small domain CYA_2748 PF03330 Lytic transglycolase CYA_2750 PF02941 Ferredoxin thioredoxin reductase variable alpha chain CYA_2751 PF06480 FtsH Extracellular CYA_2751 PF01434 Peptidase family M41 CYA_2751 PF17862 AAA+ lid domain CYA_2751 PF00004 ATPase family associated with various cellular activities (AAA) CYA_2752 PF11897 Protein of unknown function (DUF3417) CYA_2752 PF00343 Carbohydrate phosphorylase CYA_2753 PF08486 Stage II sporulation protein CYA_2754 PF14437 MafB19-like deaminase CYA_2755 PF13180 PDZ domain CYA_2756 PF00069 Protein kinase domain CYA_2756 PF03793 PASTA domain CYA_2759 PF00689 Cation transporting ATPase, C-terminus CYA_2759 PF00690 Cation transporter/ATPase, N-terminus CYA_2760 PF01370 NAD dependent epimerase/dehydratase family CYA_2760 PF08338 Domain of unknown function (DUF1731) CYA_2762 PF00490 Delta-aminolevulinic acid dehydratase CYA_2765 PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) CYA_2769 PF00459 Inositol monophosphatase family CYA_2773 PF00512 His Kinase A (phospho-acceptor) domain CYA_2773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2773 PF07689 KaiB domain CYA_2776 PF03742 PetN CYA_2779 PF00563 EAL domain CYA_2779 PF00990 Diguanylate cyclase, GGDEF domain CYA_2779 PF01590 GAF domain CYA_2779 PF00360 Phytochrome region CYA_2780 PF01026 TatD related DNase CYA_2782 PF13416 Bacterial extracellular solute-binding protein CYA_2783 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2785 PF13416 Bacterial extracellular solute-binding protein CYA_2786 PF00528 Binding-protein-dependent transport system inner membrane component CYA_2788 PF00312 Ribosomal protein S15 CYA_2790 PF00502 Phycobilisome protein CYA_2791 PF00437 Type II/IV secretion system protein CYA_2792 PF01227 GTP cyclohydrolase I CYA_2793 PF00106 short chain dehydrogenase CYA_2794 PF00005 ABC transporter CYA_2794 PF08402 TOBE domain CYA_2796 PF05175 Methyltransferase small domain CYA_2797 PF00512 His Kinase A (phospho-acceptor) domain CYA_2797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2797 PF00989 PAS fold CYA_2801 PF00085 Thioredoxin CYA_2803 PF17820 PDZ domain CYA_2803 PF13180 PDZ domain CYA_2804 PF00561 alpha/beta hydrolase fold CYA_2807 PF09367 CpeS-like protein CYA_2808 PF02913 FAD linked oxidases, C-terminal domain CYA_2808 PF01565 FAD binding domain CYA_2809 PF17862 AAA+ lid domain CYA_2809 PF01434 Peptidase family M41 CYA_2809 PF00004 ATPase family associated with various cellular activities (AAA) CYA_2810 PF13847 Methyltransferase domain CYA_2811 PF01632 Ribosomal protein L35 CYA_2812 PF00453 Ribosomal protein L20 CYA_2813 PF02142 MGS-like domain CYA_2813 PF01808 AICARFT/IMPCHase bienzyme CYA_2814 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYA_2815 PF01618 MotA/TolQ/ExbB proton channel family CYA_2816 PF02472 Biopolymer transport protein ExbD/TolR CYA_2817 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYA_2817 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYA_2818 PF03572 Peptidase family S41 CYA_2818 PF00595 PDZ domain CYA_2820 PF00171 Aldehyde dehydrogenase family CYA_2822 PF06965 Na+/H+ antiporter 1 CYA_2822 PF13462 Thioredoxin CYA_2826 PF17768 RecJ OB domain CYA_2826 PF02272 DHHA1 domain CYA_2826 PF01368 DHH family CYA_2826 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CYA_2828 PF01725 Ham1 family CYA_2830 PF02223 Thymidylate kinase CYA_2832 PF13416 Bacterial extracellular solute-binding protein CYA_2834 PF00762 Ferrochelatase CYA_2836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2836 PF00072 Response regulator receiver domain CYA_2836 PF01627 Hpt domain CYA_2836 PF00512 His Kinase A (phospho-acceptor) domain CYA_2836 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CYA_2836 PF00672 HAMP domain CYA_2841 PF01702 Queuine tRNA-ribosyltransferase CYA_2849 PF10417 C-terminal domain of 1-Cys peroxiredoxin CYA_2849 PF00578 AhpC/TSA family CYA_2851 PF00924 Mechanosensitive ion channel CYA_2852 PF12146 Serine aminopeptidase, S33 CYA_2856 PF00912 Transglycosylase CYA_2856 PF00905 Penicillin binding protein transpeptidase domain CYA_2858 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CYA_2858 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CYA_2859 PF00069 Protein kinase domain CYA_2861 PF00999 Sodium/hydrogen exchanger family CYA_2861 PF00582 Universal stress protein family CYA_2862 PF02092 Glycyl-tRNA synthetase beta subunit CYA_2862 PF05746 DALR anticodon binding domain CYA_2866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYA_2871 PF00403 Heavy-metal-associated domain CYA_2873 PF00109 Beta-ketoacyl synthase, N-terminal domain CYA_2873 PF02801 Beta-ketoacyl synthase, C-terminal domain CYA_2874 PF00550 Phosphopantetheine attachment site CYA_2875 PF01250 Ribosomal protein S6 CYA_2876 PF00436 Single-strand binding protein family CYA_2877 PF00246 Zinc carboxypeptidase CYA_2878 PF00582 Universal stress protein family CYA_2882 PF00005 ABC transporter CYA_2883 PF02769 AIR synthase related protein, C-terminal domain CYA_2883 PF00586 AIR synthase related protein, N-terminal domain CYA_2884 PF03330 Lytic transglycolase CYA_2885 PF00072 Response regulator receiver domain CYA_2886 PF05231 MASE1 CYA_2886 PF08448 PAS fold CYA_2886 PF08447 PAS fold CYA_2886 PF00990 Diguanylate cyclase, GGDEF domain CYA_2886 PF00563 EAL domain CYA_2886 PF13426 PAS domain CYA_2887 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CYA_2887 PF14572 Phosphoribosyl synthetase-associated domain CYA_2888 PF00005 ABC transporter CYA_2890 PF01098 Cell cycle protein CYA_2891 PF00266 Aminotransferase class-V CYA_2894 PF02457 DisA bacterial checkpoint controller nucleotide-binding CYA_2895 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CYA_2895 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CYA_2897 PF00919 Uncharacterized protein family UPF0004 CYA_2897 PF04055 Radical SAM superfamily CYA_2897 PF01938 TRAM domain CYA_2899 PF00709 Adenylosuccinate synthetase CYA_2903 PF02463 RecF/RecN/SMC N terminal domain CYA_2903 PF06470 SMC proteins Flexible Hinge Domain CYA_2904 PF00825 Ribonuclease P CYA_2905 PF00468 Ribosomal protein L34