CYA_0001 SM00382 ATPases associated with a variety of cellular activities CYA_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain CYA_0004 SM00382 ATPases associated with a variety of cellular activities CYA_0005 SM00822 CYA_0005 CYA_0008 SM00434 DNA Topoisomerase IV CYA_0020 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYA_0021 SM00905 Dihydroneopterin aldolase CYA_0042 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_0042 SM00320 WD40 repeats CYA_0047 SM00567 E-Z type HEAT repeats CYA_0050 SM00028 Tetratricopeptide repeats CYA_0057 SM00481 DNA polymerase alpha chain like domain CYA_0066 SM00240 Forkhead associated domain CYA_0068 SM01321 CYA_0068 CYA_0079 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYA_0093 SM00448 cheY-homologous receiver domain CYA_0100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_0100 SM00331 Sigma factor PP2C-like phosphatases CYA_0109 SM00864 Tubulin/FtsZ family, GTPase domain CYA_0109 SM00865 Tubulin/FtsZ family, C-terminal domain CYA_0113 SM00567 E-Z type HEAT repeats CYA_0125 SM00360 RNA recognition motif CYA_0132 SM00271 DnaJ molecular chaperone homology domain CYA_0147 SM00382 ATPases associated with a variety of cellular activities CYA_0152 SM00382 ATPases associated with a variety of cellular activities CYA_0153 SM00382 ATPases associated with a variety of cellular activities CYA_0156 SM01321 CYA_0156 CYA_0172 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_0173 SM00852 Probable molybdopterin binding domain CYA_0180 SM00382 ATPases associated with a variety of cellular activities CYA_0180 SM01086 C-terminal, D2-small domain, of ClpB protein CYA_0181 SM00316 Ribosomal protein S1-like RNA-binding domain CYA_0181 SM00357 Cold shock protein domain CYA_0181 SM00955 CYA_0181 CYA_0184 SM00642 Alpha-amylase domain CYA_0189 SM00020 Trypsin-like serine protease CYA_0194 SM00382 ATPases associated with a variety of cellular activities CYA_0195 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CYA_0201 SM00421 helix_turn_helix, Lux Regulon CYA_0201 SM00448 cheY-homologous receiver domain CYA_0203 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CYA_0203 SM01232 CYA_0203 CYA_0207 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYA_0207 SM00465 GIY-YIG type nucleases (URI domain) CYA_0209 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_0212 SM00331 Sigma factor PP2C-like phosphatases CYA_0212 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CYA_0216 SM00567 E-Z type HEAT repeats CYA_0217 SM00567 E-Z type HEAT repeats CYA_0218 SM01094 CpcD/allophycocyanin linker domain CYA_0232 SM00093 SERine Proteinase INhibitors CYA_0253 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_0253 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYA_0253 SM00091 PAS domain CYA_0253 SM00387 Histidine kinase-like ATPases CYA_0253 SM00388 His Kinase A (phosphoacceptor) domain CYA_0263 SM00642 Alpha-amylase domain CYA_0280 SM00560 LamG-like jellyroll fold domain CYA_0283 SM00382 ATPases associated with a variety of cellular activities CYA_0291 SM00967 RNA 2'-O ribose methyltransferase substrate binding CYA_0292 SM00535 Ribonuclease III family CYA_0296 SM01228 CYA_0296 CYA_0299 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYA_0305 SM00411 bacterial (prokaryotic) histone like domain CYA_0309 SM00873 B3/4 domain CYA_0309 SM00874 tRNA synthetase B5 domain CYA_0309 SM00896 Ferredoxin-fold anticodon binding domain CYA_0311 SM00382 ATPases associated with a variety of cellular activities CYA_0313 SM00382 ATPases associated with a variety of cellular activities CYA_0318 SM00487 DEAD-like helicases superfamily CYA_0318 SM00490 helicase superfamily c-terminal domain CYA_0322 SM00487 DEAD-like helicases superfamily CYA_0322 SM00490 helicase superfamily c-terminal domain CYA_0323 SM00100 Cyclic nucleotide-monophosphate binding domain CYA_0325 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYA_0326 SM00563 Phosphate acyltransferases CYA_0335 SM00382 ATPases associated with a variety of cellular activities CYA_0346 SM00857 Resolvase, N terminal domain CYA_0359 SM00845 GatB domain CYA_0365 SM00327 von Willebrand factor (vWF) type A domain CYA_0365 SM00382 ATPases associated with a variety of cellular activities CYA_0373 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_0397 SM00857 Resolvase, N terminal domain CYA_0399 SM00642 Alpha-amylase domain CYA_0403 SM00382 ATPases associated with a variety of cellular activities CYA_0410 SM00663 RNA polymerase I subunit A N-terminus CYA_0412 SM00986 Uracil DNA glycosylase superfamily CYA_0412 SM00987 UreE urease accessory protein, C-terminal domain CYA_0420 SM00382 ATPases associated with a variety of cellular activities CYA_0421 SM00448 cheY-homologous receiver domain CYA_0421 SM00862 Transcriptional regulatory protein, C terminal CYA_0427 SM00961 Ribulose bisphosphate carboxylase, small chain CYA_0429 SM00240 Forkhead associated domain CYA_0437 SM01321 CYA_0437 CYA_0447 SM00861 Transketolase, pyrimidine binding domain CYA_0457 SM00322 K homology RNA-binding domain CYA_0470 SM00382 ATPases associated with a variety of cellular activities CYA_0472 SM00881 CoA binding domain CYA_0479 SM00448 cheY-homologous receiver domain CYA_0483 SM00240 Forkhead associated domain CYA_0483 SM00267 diguanylate cyclase CYA_0485 SM00984 UDP binding domain CYA_0488 SM00507 HNH nucleases CYA_0495 SM00877 CYA_0495 CYA_0506 SM01094 CpcD/allophycocyanin linker domain CYA_0511 SM00360 RNA recognition motif CYA_0513 SM00422 helix_turn_helix, mercury resistance CYA_0522 SM00989 CYA_0522 CYA_0525 SM00989 CYA_0525 CYA_0531 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CYA_0531 SM00474 3'-5' exonuclease CYA_0531 SM00475 5'-3' exonuclease CYA_0531 SM00482 DNA polymerase A domain CYA_0547 SM00852 Probable molybdopterin binding domain CYA_0549 SM01321 CYA_0549 CYA_0561 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CYA_0561 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CYA_0561 SM00493 CYA_0561 CYA_0563 SM00382 ATPases associated with a variety of cellular activities CYA_0566 SM00917 LeuA allosteric (dimerisation) domain CYA_0581 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_0582 SM00838 Elongation factor G C-terminus CYA_0594 SM00028 Tetratricopeptide repeats CYA_0595 SM00857 Resolvase, N terminal domain CYA_0604 SM00988 UreE urease accessory protein, N-terminal domain CYA_0615 SM00382 ATPases associated with a variety of cellular activities CYA_0616 SM00382 ATPases associated with a variety of cellular activities CYA_0619 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CYA_0622 SM01209 CYA_0622 CYA_0622 SM01210 CYA_0622 CYA_0624 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_0626 SM00849 Metallo-beta-lactamase superfamily CYA_0627 SM01130 CYA_0627 CYA_0636 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYA_0637 SM00387 Histidine kinase-like ATPases CYA_0637 SM00388 His Kinase A (phosphoacceptor) domain CYA_0637 SM01248 CYA_0637 CYA_0646 SM01211 CYA_0646 CYA_0647 SM00448 cheY-homologous receiver domain CYA_0652 SM00859 Semialdehyde dehydrogenase, NAD binding domain CYA_0656 SM00382 ATPases associated with a variety of cellular activities CYA_0656 SM01086 C-terminal, D2-small domain, of ClpB protein CYA_0662 SM00919 Malic enzyme, NAD binding domain CYA_0662 SM01274 CYA_0662 CYA_0673 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_0675 SM00924 MgtE intracellular N domain CYA_0685 SM00062 Bacterial periplasmic substrate-binding proteins CYA_0692 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_0700 SM00460 Transglutaminase/protease-like homologues CYA_0702 SM00116 Domain in cystathionine beta-synthase and other proteins. CYA_0707 SM00732 Likely ribonuclease with RNase H fold. CYA_0709 SM00996 S-adenosyl-L-homocysteine hydrolase CYA_0709 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CYA_0714 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_0725 SM00054 EF-hand, calcium binding motif CYA_0727 SM00857 Resolvase, N terminal domain CYA_0730 SM01101 CYA_0730 CYA_0735 SM00487 DEAD-like helicases superfamily CYA_0735 SM00490 helicase superfamily c-terminal domain CYA_0740 SM00363 S4 RNA-binding domain CYA_0759 SM00382 ATPases associated with a variety of cellular activities CYA_0759 SM00962 SRP54-type protein, GTPase domain CYA_0759 SM00963 SRP54-type protein, helical bundle domain CYA_0762 SM00957 SecA DEAD-like domain CYA_0762 SM00958 SecA preprotein cross-linking domain CYA_0768 SM00855 Phosphoglycerate mutase family CYA_0773 SM00363 S4 RNA-binding domain CYA_0781 SM00098 Alkaline phosphatase homologues CYA_0782 SM00460 Transglutaminase/protease-like homologues CYA_0784 SM00382 ATPases associated with a variety of cellular activities CYA_0785 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_0788 SM00271 DnaJ molecular chaperone homology domain CYA_0794 SM00388 His Kinase A (phosphoacceptor) domain CYA_0795 SM00387 Histidine kinase-like ATPases CYA_0795 SM00388 His Kinase A (phosphoacceptor) domain CYA_0796 SM00421 helix_turn_helix, Lux Regulon CYA_0796 SM00448 cheY-homologous receiver domain CYA_0802 SM00382 ATPases associated with a variety of cellular activities CYA_0802 SM00994 ClpX C4-type zinc finger CYA_0802 SM01086 C-terminal, D2-small domain, of ClpB protein CYA_0803 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYA_0803 SM00292 breast cancer carboxy-terminal domain CYA_0803 SM00532 Ligase N family CYA_0804 SM00358 Double-stranded RNA binding motif CYA_0804 SM00535 Ribonuclease III family CYA_0808 SM00857 Resolvase, N terminal domain CYA_0809 SM00478 endonuclease III CYA_0809 SM00525 CYA_0809 CYA_0812 SM00363 S4 RNA-binding domain CYA_0820 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_0821 SM00316 Ribosomal protein S1-like RNA-binding domain CYA_0826 SM00382 ATPases associated with a variety of cellular activities CYA_0831 SM00989 CYA_0831 CYA_0834 SM00989 CYA_0834 CYA_0840 SM00387 Histidine kinase-like ATPases CYA_0845 SM00116 Domain in cystathionine beta-synthase and other proteins. CYA_0846 SM00478 endonuclease III CYA_0846 SM00525 CYA_0846 CYA_0850 SM00240 Forkhead associated domain CYA_0852 SM00878 Biotin carboxylase C-terminal domain CYA_0856 SM00271 DnaJ molecular chaperone homology domain CYA_0891 SM00382 ATPases associated with a variety of cellular activities CYA_0892 SM00382 ATPases associated with a variety of cellular activities CYA_0912 SM00478 endonuclease III CYA_0912 SM00525 CYA_0912 CYA_0913 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_0915 SM00670 Large family of predicted nucleotide-binding domains CYA_0916 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_0916 SM00387 Histidine kinase-like ATPases CYA_0916 SM00388 His Kinase A (phosphoacceptor) domain CYA_0917 SM00650 Ribosomal RNA adenine dimethylases CYA_0926 SM00470 ParB-like nuclease domain CYA_0927 SM00421 helix_turn_helix, Lux Regulon CYA_0927 SM00448 cheY-homologous receiver domain CYA_0936 SM00822 CYA_0936 CYA_0938 SM00240 Forkhead associated domain CYA_0940 SM00411 bacterial (prokaryotic) histone like domain CYA_0947 SM01350 CYA_0947 CYA_0951 SM00382 ATPases associated with a variety of cellular activities CYA_0953 SM00028 Tetratricopeptide repeats CYA_0966 SM00419 helix_turn_helix, cAMP Regulatory protein CYA_0978 SM00331 Sigma factor PP2C-like phosphatases CYA_0978 SM00448 cheY-homologous receiver domain CYA_0986 SM00959 Rho termination factor, N-terminal domain CYA_1003 SM01091 Transporter associated domain CYA_1009 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CYA_1021 SM00382 ATPases associated with a variety of cellular activities CYA_1022 SM00369 Leucine-rich repeats, typical (most populated) subfamily CYA_1024 SM00382 ATPases associated with a variety of cellular activities CYA_1025 SM01093 CYA_1025 CYA_1030 SM00382 ATPases associated with a variety of cellular activities CYA_1030 SM00393 Putative single-stranded nucleic acids-binding domain CYA_1033 SM00448 cheY-homologous receiver domain CYA_1033 SM00862 Transcriptional regulatory protein, C terminal CYA_1044 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CYA_1050 SM00382 ATPases associated with a variety of cellular activities CYA_1063 SM00562 CYA_1063 CYA_1064 SM00382 ATPases associated with a variety of cellular activities CYA_1069 SM00382 ATPases associated with a variety of cellular activities CYA_1069 SM00962 SRP54-type protein, GTPase domain CYA_1069 SM00963 SRP54-type protein, helical bundle domain CYA_1074 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_1079 SM00387 Histidine kinase-like ATPases CYA_1092 SM00382 ATPases associated with a variety of cellular activities CYA_1093 SM00967 RNA 2'-O ribose methyltransferase substrate binding CYA_1097 SM00642 Alpha-amylase domain CYA_1098 SM00933 CYA_1098 CYA_1104 SM00382 ATPases associated with a variety of cellular activities CYA_1109 SM00710 Parallel beta-helix repeats CYA_1112 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CYA_1112 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CYA_1113 SM00474 3'-5' exonuclease CYA_1125 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYA_1128 SM01321 CYA_1128 CYA_1130 SM00052 Putative diguanylate phosphodiesterase CYA_1132 SM00849 Metallo-beta-lactamase superfamily CYA_1134 SM00271 DnaJ molecular chaperone homology domain CYA_1137 SM01321 CYA_1137 CYA_1143 SM00507 HNH nucleases CYA_1157 SM00316 Ribosomal protein S1-like RNA-binding domain CYA_1167 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CYA_1168 SM01374 CYA_1168 CYA_1172 SM00322 K homology RNA-binding domain CYA_1175 SM01382 CYA_1175 CYA_1175 SM01383 CYA_1175 CYA_1196 SM00961 Ribulose bisphosphate carboxylase, small chain CYA_1204 SM00563 Phosphate acyltransferases CYA_1209 SM00382 ATPases associated with a variety of cellular activities CYA_1213 SM00955 CYA_1213 CYA_1214 SM00421 helix_turn_helix, Lux Regulon CYA_1214 SM00448 cheY-homologous receiver domain CYA_1227 SM00316 Ribosomal protein S1-like RNA-binding domain CYA_1236 SM00732 Likely ribonuclease with RNase H fold. CYA_1249 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CYA_1252 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_1252 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_1255 SM00028 Tetratricopeptide repeats CYA_1269 SM01207 CYA_1269 CYA_1272 SM00841 Elongation factor P, C-terminal CYA_1272 SM01185 CYA_1272 CYA_1284 SM00062 Bacterial periplasmic substrate-binding proteins CYA_1285 SM00382 ATPases associated with a variety of cellular activities CYA_1296 SM00244 prohibitin homologues CYA_1297 SM00244 prohibitin homologues CYA_1301 SM00838 Elongation factor G C-terminus CYA_1301 SM00889 Elongation factor G, domain IV CYA_1303 SM01403 CYA_1303 CYA_1328 SM00382 ATPases associated with a variety of cellular activities CYA_1331 SM00100 Cyclic nucleotide-monophosphate binding domain CYA_1331 SM00419 helix_turn_helix, cAMP Regulatory protein CYA_1334 SM00829 Enoylreductase CYA_1342 SM00028 Tetratricopeptide repeats CYA_1349 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_1349 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYA_1349 SM00091 PAS domain CYA_1349 SM00387 Histidine kinase-like ATPases CYA_1349 SM00388 His Kinase A (phosphoacceptor) domain CYA_1363 SM01230 CYA_1363 CYA_1365 SM00822 CYA_1365 CYA_1368 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYA_1368 SM00493 CYA_1368 CYA_1374 SM00857 Resolvase, N terminal domain CYA_1392 SM00448 cheY-homologous receiver domain CYA_1392 SM00862 Transcriptional regulatory protein, C terminal CYA_1393 SM00028 Tetratricopeptide repeats CYA_1395 SM01133 CYA_1395 CYA_1401 SM00382 ATPases associated with a variety of cellular activities CYA_1406 SM00883 Chaperonin 10 Kd subunit CYA_1409 SM01240 CYA_1409 CYA_1415 SM00434 DNA Topoisomerase IV CYA_1439 SM00857 Resolvase, N terminal domain CYA_1441 SM00382 ATPases associated with a variety of cellular activities CYA_1445 SM00937 CYA_1445 CYA_1451 SM00662 RNA polymerases D CYA_1462 SM01005 Alanine racemase, C-terminal domain CYA_1466 SM00487 DEAD-like helicases superfamily CYA_1466 SM00490 helicase superfamily c-terminal domain CYA_1467 SM01329 CYA_1467 CYA_1472 SM00857 Resolvase, N terminal domain CYA_1491 SM00100 Cyclic nucleotide-monophosphate binding domain CYA_1494 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_1508 SM00938 Nitrogen regulatory protein P-II CYA_1519 SM00363 S4 RNA-binding domain CYA_1519 SM01390 CYA_1519 CYA_1523 SM00387 Histidine kinase-like ATPases CYA_1523 SM00433 TopoisomeraseII CYA_1526 SM00244 prohibitin homologues CYA_1541 SM00419 helix_turn_helix, cAMP Regulatory protein CYA_1544 SM00422 helix_turn_helix, mercury resistance CYA_1548 SM01001 AIR carboxylase CYA_1550 SM00305 Hint (Hedgehog/Intein) domain C-terminal region CYA_1550 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CYA_1550 SM00382 ATPases associated with a variety of cellular activities CYA_1555 SM00382 ATPases associated with a variety of cellular activities CYA_1556 SM00363 S4 RNA-binding domain CYA_1570 SM00382 ATPases associated with a variety of cellular activities CYA_1576 SM00849 Metallo-beta-lactamase superfamily CYA_1576 SM00903 Flavin reductase like domain CYA_1583 SM00382 ATPases associated with a variety of cellular activities CYA_1598 SM00481 DNA polymerase alpha chain like domain CYA_1609 SM00382 ATPases associated with a variety of cellular activities CYA_1611 SM00877 CYA_1611 CYA_1612 SM00877 CYA_1612 CYA_1614 SM00961 Ribulose bisphosphate carboxylase, small chain CYA_1616 SM00877 CYA_1616 CYA_1626 SM00382 ATPases associated with a variety of cellular activities CYA_1629 SM00226 Low molecular weight phosphatase family CYA_1645 SM00857 Resolvase, N terminal domain CYA_1647 SM00480 DNA polymerase III beta subunit CYA_1654 SM00849 Metallo-beta-lactamase superfamily CYA_1656 SM00387 Histidine kinase-like ATPases CYA_1656 SM00388 His Kinase A (phosphoacceptor) domain CYA_1656 SM00448 cheY-homologous receiver domain CYA_1657 SM00073 Histidine Phosphotransfer domain CYA_1657 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYA_1657 SM00091 PAS domain CYA_1657 SM00387 Histidine kinase-like ATPases CYA_1657 SM00388 His Kinase A (phosphoacceptor) domain CYA_1657 SM00448 cheY-homologous receiver domain CYA_1658 SM00831 Cation transporter/ATPase, N-terminus CYA_1659 SM00849 Metallo-beta-lactamase superfamily CYA_1659 SM00903 Flavin reductase like domain CYA_1663 SM00855 Phosphoglycerate mutase family CYA_1667 SM01001 AIR carboxylase CYA_1669 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYA_1677 SM00360 RNA recognition motif CYA_1679 SM00382 ATPases associated with a variety of cellular activities CYA_1693 SM00116 Domain in cystathionine beta-synthase and other proteins. CYA_1693 SM00924 MgtE intracellular N domain CYA_1700 SM00028 Tetratricopeptide repeats CYA_1701 SM00861 Transketolase, pyrimidine binding domain CYA_1705 SM00450 Rhodanese Homology Domain CYA_1712 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CYA_1718 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYA_1720 SM00849 Metallo-beta-lactamase superfamily CYA_1722 SM00450 Rhodanese Homology Domain CYA_1726 SM00028 Tetratricopeptide repeats CYA_1729 SM00998 Adenylosuccinate lyase C-terminus CYA_1735 SM00382 ATPases associated with a variety of cellular activities CYA_1749 SM00851 MGS-like domain CYA_1749 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYA_1758 SM00347 helix_turn_helix multiple antibiotic resistance protein CYA_1762 SM00382 ATPases associated with a variety of cellular activities CYA_1763 SM00487 DEAD-like helicases superfamily CYA_1763 SM00490 helicase superfamily c-terminal domain CYA_1763 SM00982 CYA_1763 CYA_1763 SM01058 CarD-like/TRCF domain CYA_1772 SM00857 Resolvase, N terminal domain CYA_1778 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CYA_1778 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CYA_1779 SM00649 Ribosomal protein L11/L12 CYA_1786 SM00393 Putative single-stranded nucleic acids-binding domain CYA_1789 SM00363 S4 RNA-binding domain CYA_1795 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_1795 SM00245 tail specific protease CYA_1798 SM01329 CYA_1798 CYA_1799 SM00100 Cyclic nucleotide-monophosphate binding domain CYA_1799 SM00419 helix_turn_helix, cAMP Regulatory protein CYA_1800 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_1805 SM00028 Tetratricopeptide repeats CYA_1806 SM00271 DnaJ molecular chaperone homology domain CYA_1812 SM00382 ATPases associated with a variety of cellular activities CYA_1816 SM00028 Tetratricopeptide repeats CYA_1841 SM00899 CYA_1841 CYA_1843 SM00530 Helix-turn-helix XRE-family like proteins CYA_1846 SM00382 ATPases associated with a variety of cellular activities CYA_1850 SM00382 ATPases associated with a variety of cellular activities CYA_1852 SM00028 Tetratricopeptide repeats CYA_1854 SM00028 Tetratricopeptide repeats CYA_1859 SM00382 ATPases associated with a variety of cellular activities CYA_1863 SM00116 Domain in cystathionine beta-synthase and other proteins. CYA_1867 SM00859 Semialdehyde dehydrogenase, NAD binding domain CYA_1880 SM00382 ATPases associated with a variety of cellular activities CYA_1881 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYA_1882 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_1891 SM00857 Resolvase, N terminal domain CYA_1892 SM00448 cheY-homologous receiver domain CYA_1892 SM00862 Transcriptional regulatory protein, C terminal CYA_1893 SM00382 ATPases associated with a variety of cellular activities CYA_1894 SM00897 FIST N domain CYA_1894 SM01204 CYA_1894 CYA_1895 SM00257 Lysin motif CYA_1896 SM00840 CYA_1896 CYA_1901 SM01248 CYA_1901 CYA_1902 SM01247 CYA_1902 CYA_1906 SM00464 Found in ATP-dependent protease La (LON) CYA_1910 SM00421 helix_turn_helix, Lux Regulon CYA_1913 SM01321 CYA_1913 CYA_1917 SM00450 Rhodanese Homology Domain CYA_1919 SM00382 ATPases associated with a variety of cellular activities CYA_1920 SM00382 ATPases associated with a variety of cellular activities CYA_1929 SM00271 DnaJ molecular chaperone homology domain CYA_1936 SM00382 ATPases associated with a variety of cellular activities CYA_1937 SM00857 Resolvase, N terminal domain CYA_1940 SM00318 Staphylococcal nuclease homologues CYA_1944 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_1944 SM00954 Region found in RelA / SpoT proteins CYA_1958 SM01321 CYA_1958 CYA_1963 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CYA_1965 SM00382 ATPases associated with a variety of cellular activities CYA_1966 SM00382 ATPases associated with a variety of cellular activities CYA_1968 SM01359 CYA_1968 CYA_1968 SM01360 CYA_1968 CYA_2002 SM00857 Resolvase, N terminal domain CYA_2005 SM00318 Staphylococcal nuclease homologues CYA_2006 SM00028 Tetratricopeptide repeats CYA_2013 SM00487 DEAD-like helicases superfamily CYA_2013 SM00490 helicase superfamily c-terminal domain CYA_2021 SM00382 ATPases associated with a variety of cellular activities CYA_2027 SM00448 cheY-homologous receiver domain CYA_2027 SM00862 Transcriptional regulatory protein, C terminal CYA_2032 SM00382 ATPases associated with a variety of cellular activities CYA_2035 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CYA_2035 SM00534 ATPase domain of DNA mismatch repair MUTS family CYA_2040 SM00567 E-Z type HEAT repeats CYA_2041 SM01094 CpcD/allophycocyanin linker domain CYA_2048 SM00382 ATPases associated with a variety of cellular activities CYA_2049 SM00849 Metallo-beta-lactamase superfamily CYA_2055 SM00271 DnaJ molecular chaperone homology domain CYA_2062 SM00642 Alpha-amylase domain CYA_2064 SM01321 CYA_2064 CYA_2079 SM00028 Tetratricopeptide repeats CYA_2086 SM00909 Sporulation and spore germination CYA_2093 SM00327 von Willebrand factor (vWF) type A domain CYA_2124 SM00028 Tetratricopeptide repeats CYA_2128 SM00028 Tetratricopeptide repeats CYA_2146 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_2150 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CYA_2151 SM00155 Phospholipase D. Active site motifs. CYA_2151 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYA_2155 SM00073 Histidine Phosphotransfer domain CYA_2155 SM00260 Two component signalling adaptor domain CYA_2155 SM00387 Histidine kinase-like ATPases CYA_2155 SM00448 cheY-homologous receiver domain CYA_2156 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CYA_2160 SM00260 Two component signalling adaptor domain CYA_2161 SM00448 cheY-homologous receiver domain CYA_2162 SM00448 cheY-homologous receiver domain CYA_2166 SM00950 CYA_2166 CYA_2169 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CYA_2177 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CYA_2179 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYA_2181 SM00646 CYA_2181 CYA_2183 SM01065 Starch binding domain CYA_2184 SM00387 Histidine kinase-like ATPases CYA_2184 SM00388 His Kinase A (phosphoacceptor) domain CYA_2189 SM00420 helix_turn_helix, Deoxyribose operon repressor CYA_2193 SM00382 ATPases associated with a variety of cellular activities CYA_2196 SM00563 Phosphate acyltransferases CYA_2217 SM01080 CYA_2217 CYA_2218 SM00316 Ribosomal protein S1-like RNA-binding domain CYA_2218 SM00322 K homology RNA-binding domain CYA_2221 SM01321 CYA_2221 CYA_2223 SM00917 LeuA allosteric (dimerisation) domain CYA_2224 SM00382 ATPases associated with a variety of cellular activities CYA_2225 SM01094 CpcD/allophycocyanin linker domain CYA_2229 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_2231 SM00116 Domain in cystathionine beta-synthase and other proteins. CYA_2231 SM00382 ATPases associated with a variety of cellular activities CYA_2250 SM00857 Resolvase, N terminal domain CYA_2253 SM00986 Uracil DNA glycosylase superfamily CYA_2253 SM00987 UreE urease accessory protein, C-terminal domain CYA_2256 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_2262 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_2298 SM00421 helix_turn_helix, Lux Regulon CYA_2298 SM00448 cheY-homologous receiver domain CYA_2315 SM00382 ATPases associated with a variety of cellular activities CYA_2316 SM00448 cheY-homologous receiver domain CYA_2316 SM00862 Transcriptional regulatory protein, C terminal CYA_2318 SM00287 Bacterial SH3 domain homologues CYA_2323 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_2326 SM00861 Transketolase, pyrimidine binding domain CYA_2329 SM00400 zinc finger CYA_2329 SM00493 CYA_2329 CYA_2333 SM00028 Tetratricopeptide repeats CYA_2333 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_2336 SM00448 cheY-homologous receiver domain CYA_2336 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYA_2346 SM00861 Transketolase, pyrimidine binding domain CYA_2347 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_2351 SM00421 helix_turn_helix, Lux Regulon CYA_2352 SM00091 PAS domain CYA_2352 SM00387 Histidine kinase-like ATPases CYA_2352 SM00388 His Kinase A (phosphoacceptor) domain CYA_2353 SM00822 CYA_2353 CYA_2355 SM01321 CYA_2355 CYA_2360 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYA_2365 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CYA_2379 SM00316 Ribosomal protein S1-like RNA-binding domain CYA_2392 SM00857 Resolvase, N terminal domain CYA_2394 SM00448 cheY-homologous receiver domain CYA_2394 SM00862 Transcriptional regulatory protein, C terminal CYA_2395 SM01240 CYA_2395 CYA_2405 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CYA_2405 SM00240 Forkhead associated domain CYA_2407 SM00904 Riboflavin kinase CYA_2411 SM01018 B12 binding domain CYA_2415 SM01321 CYA_2415 CYA_2425 SM00857 Resolvase, N terminal domain CYA_2433 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYA_2437 SM00382 ATPases associated with a variety of cellular activities CYA_2439 SM00857 Resolvase, N terminal domain CYA_2441 SM00347 helix_turn_helix multiple antibiotic resistance protein CYA_2453 SM00028 Tetratricopeptide repeats CYA_2469 SM00232 JAB/MPN domain CYA_2471 SM00450 Rhodanese Homology Domain CYA_2474 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYA_2483 SM00822 CYA_2483 CYA_2518 SM00933 CYA_2518 CYA_2530 SM00235 Zinc-dependent metalloprotease CYA_2531 SM00382 ATPases associated with a variety of cellular activities CYA_2538 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CYA_2553 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_2553 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYA_2553 SM00091 PAS domain CYA_2553 SM00387 Histidine kinase-like ATPases CYA_2553 SM00388 His Kinase A (phosphoacceptor) domain CYA_2554 SM01192 CYA_2554 CYA_2554 SM01193 CYA_2554 CYA_2564 SM00487 DEAD-like helicases superfamily CYA_2564 SM00490 helicase superfamily c-terminal domain CYA_2566 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYA_2569 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_2569 SM00091 PAS domain CYA_2569 SM00387 Histidine kinase-like ATPases CYA_2569 SM00388 His Kinase A (phosphoacceptor) domain CYA_2572 SM00857 Resolvase, N terminal domain CYA_2575 SM00387 Histidine kinase-like ATPases CYA_2575 SM00388 His Kinase A (phosphoacceptor) domain CYA_2579 SM00930 CYA_2579 CYA_2580 SM01321 CYA_2580 CYA_2582 SM00463 Small MutS-related domain CYA_2582 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CYA_2582 SM00534 ATPase domain of DNA mismatch repair MUTS family CYA_2587 SM01321 CYA_2587 CYA_2594 SM01234 CYA_2594 CYA_2611 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CYA_2616 SM00853 MutL C terminal dimerisation domain CYA_2616 SM01340 CYA_2616 CYA_2617 SM00756 CYA_2617 CYA_2618 SM00267 diguanylate cyclase CYA_2618 SM00448 cheY-homologous receiver domain CYA_2622 SM00382 ATPases associated with a variety of cellular activities CYA_2623 SM00382 ATPases associated with a variety of cellular activities CYA_2628 SM00487 DEAD-like helicases superfamily CYA_2628 SM00490 helicase superfamily c-terminal domain CYA_2633 SM00530 Helix-turn-helix XRE-family like proteins CYA_2640 SM01321 CYA_2640 CYA_2644 SM00448 cheY-homologous receiver domain CYA_2651 SM00028 Tetratricopeptide repeats CYA_2652 SM00567 E-Z type HEAT repeats CYA_2653 SM00487 DEAD-like helicases superfamily CYA_2653 SM00490 helicase superfamily c-terminal domain CYA_2653 SM01142 CYA_2653 CYA_2656 SM00248 ankyrin repeats CYA_2658 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_2658 SM00876 Biotin and Thiamin Synthesis associated domain CYA_2659 SM00091 PAS domain CYA_2659 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYA_2659 SM00387 Histidine kinase-like ATPases CYA_2659 SM00388 His Kinase A (phosphoacceptor) domain CYA_2662 SM00116 Domain in cystathionine beta-synthase and other proteins. CYA_2665 SM00028 Tetratricopeptide repeats CYA_2665 SM00271 DnaJ molecular chaperone homology domain CYA_2667 SM00248 ankyrin repeats CYA_2673 SM00028 Tetratricopeptide repeats CYA_2673 SM00271 DnaJ molecular chaperone homology domain CYA_2674 SM00062 Bacterial periplasmic substrate-binding proteins CYA_2676 SM00240 Forkhead associated domain CYA_2684 SM00857 Resolvase, N terminal domain CYA_2690 SM00240 Forkhead associated domain CYA_2692 SM00240 Forkhead associated domain CYA_2694 SM00857 Resolvase, N terminal domain CYA_2697 SM00072 Guanylate kinase homologues. CYA_2699 SM00448 cheY-homologous receiver domain CYA_2699 SM00862 Transcriptional regulatory protein, C terminal CYA_2708 SM00382 ATPases associated with a variety of cellular activities CYA_2714 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_2714 SM00387 Histidine kinase-like ATPases CYA_2718 SM00726 Ubiquitin-interacting motif. CYA_2724 SM01321 CYA_2724 CYA_2727 SM00267 diguanylate cyclase CYA_2727 SM00448 cheY-homologous receiver domain CYA_2732 SM00836 DALR anticodon binding domain CYA_2732 SM01016 Arginyl tRNA synthetase N terminal dom CYA_2734 SM00893 Electron transfer flavoprotein domain CYA_2735 SM00893 Electron transfer flavoprotein domain CYA_2737 SM00448 cheY-homologous receiver domain CYA_2738 SM00448 cheY-homologous receiver domain CYA_2739 SM00448 cheY-homologous receiver domain CYA_2740 SM00260 Two component signalling adaptor domain CYA_2741 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CYA_2741 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYA_2742 SM00073 Histidine Phosphotransfer domain CYA_2742 SM00260 Two component signalling adaptor domain CYA_2742 SM00387 Histidine kinase-like ATPases CYA_2742 SM00448 cheY-homologous receiver domain CYA_2742 SM01231 CYA_2742 CYA_2751 SM00382 ATPases associated with a variety of cellular activities CYA_2755 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_2756 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_2759 SM00831 Cation transporter/ATPase, N-terminus CYA_2762 SM01004 Delta-aminolevulinic acid dehydratase CYA_2773 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_2773 SM00387 Histidine kinase-like ATPases CYA_2773 SM00388 His Kinase A (phosphoacceptor) domain CYA_2779 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_2779 SM00387 Histidine kinase-like ATPases CYA_2779 SM00388 His Kinase A (phosphoacceptor) domain CYA_2788 SM01387 CYA_2788 CYA_2789 SM00567 E-Z type HEAT repeats CYA_2791 SM00382 ATPases associated with a variety of cellular activities CYA_2793 SM00822 CYA_2793 CYA_2794 SM00382 ATPases associated with a variety of cellular activities CYA_2797 SM00388 His Kinase A (phosphoacceptor) domain CYA_2803 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_2806 SM00507 HNH nucleases CYA_2809 SM00382 ATPases associated with a variety of cellular activities CYA_2813 SM00798 AICARFT/IMPCHase bienzyme CYA_2813 SM00851 MGS-like domain CYA_2814 SM00062 Bacterial periplasmic substrate-binding proteins CYA_2814 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CYA_2818 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYA_2818 SM00245 tail specific protease CYA_2821 SM00360 RNA recognition motif CYA_2823 SM00507 HNH nucleases CYA_2831 SM00880 CYA_2831 CYA_2836 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYA_2836 SM00073 Histidine Phosphotransfer domain CYA_2836 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYA_2836 SM00091 PAS domain CYA_2836 SM00387 Histidine kinase-like ATPases CYA_2836 SM00388 His Kinase A (phosphoacceptor) domain CYA_2836 SM00448 cheY-homologous receiver domain CYA_2859 SM00220 Serine/Threonine protein kinases, catalytic domain CYA_2867 SM00960 Roadblock/LC7 domain CYA_2873 SM00825 Beta-ketoacyl synthase CYA_2877 SM00631 CYA_2877 CYA_2882 SM00382 ATPases associated with a variety of cellular activities CYA_2885 SM00448 cheY-homologous receiver domain CYA_2886 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CYA_2886 SM00091 PAS domain CYA_2886 SM00387 Histidine kinase-like ATPases CYA_2887 SM01400 CYA_2887 CYA_2888 SM00382 ATPases associated with a variety of cellular activities CYA_2897 SM00729 Elongator protein 3, MiaB family, Radical SAM CYA_2899 SM00788 Adenylosuccinate synthetase CYA_2900 SM00245 tail specific protease CYA_2903 SM00968 SMC proteins Flexible Hinge Domain