locus_tag old_locus_tag gene Name start end strand product note type ID NCBI CYA_0001 CYA_0001 dnaA dnaA 71 1474 + chromosomal replication initiator protein DnaA identified by match to protein family HMM PF00308%3B match to protein family HMM TIGR00362 gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0001 CYA_0002 CYA_0002 CYA_0002 2331 3152 - conserved domain protein identified by similarity to GB:AAS82375.1 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0002 CYA_0003 CYA_0003 CYA_0003 1645 2334 + conserved hypothetical protein gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0003 CYA_0004 CYA_0004 CYA_0004 3256 5142 - metalloprotease%2C ATP-dependent%2C FtsH family identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM TIGR01241 gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0004 CYA_0005 CYA_0005 CYA_0005 5268 6143 - oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0005 CYA_0006 CYA_0006 CYA_0006 6134 6247 + hypothetical protein identified by Glimmer2%3B putative gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0006 CYA_0007 CYA_0007 CYA_0007 6354 7019 + hypothetical protein identified by Glimmer2%3B putative gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0007 CYA_0008 CYA_0008 CYA_0008 7057 9606 - type II DNA topoisomerase%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989 gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0008 CYA_0009 CYA_0009 CYA_0009 9806 11209 + phosphoglucomutase/phosphomannomutase family protein identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0009 CYA_0010 CYA_0010 CYA_0010 11268 11660 - glyoxalase family protein identified by match to protein family HMM PF00903 gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0010 CYA_0011 CYA_0011 thiC thiC 11810 13177 - thiamine biosynthesis protein ThiC identified by match to protein family HMM PF01964%3B match to protein family HMM TIGR00190 gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0011 CYA_0012 CYA_0012 CYA_0012 13486 14220 - hypothetical protein identified by Glimmer2%3B putative gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0012 CYA_0013 CYA_0013 CYA_0013 14217 14957 - conserved hypothetical protein gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0013 CYA_0014 CYA_0014 CYA_0014 14998 15462 - GUN4-like family protein identified by match to protein family HMM PF05419 gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0014 CYA_0015 CYA_0015 CYA_0015 15513 16040 - hypothetical protein identified by Glimmer2%3B putative gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0015 CYA_0016 CYA_0016 gvpW gvpW 16201 16965 - gas vesicle protein W identified by similarity to GB:CAE11909.1 gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0016 CYA_0017 CYA_0017 surE-1 surE-1 17769 18500 - acid phosphatase SurE identified by match to protein family HMM PF01975%3B match to protein family HMM TIGR00087 gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0017 CYA_0018 CYA_0018 CYA_0018 17166 17786 + conserved hypothetical protein gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0018 CYA_0019 CYA_0019 folK folK 19706 20212 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by match to protein family HMM PF01288%3B match to protein family HMM TIGR01498 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0019 CYA_0020 CYA_0020 gap-1 gap-1 18689 19720 + glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0020 CYA_0021 CYA_0021 folB folB 20219 20590 - dihydroneopterin aldolase identified by match to protein family HMM PF02152%3B match to protein family HMM TIGR00525%3B match to protein family HMM TIGR00526 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0021 CYA_0022 CYA_0022 folP folP 20577 21446 - dihydropteroate synthase identified by match to protein family HMM PF00809%3B match to protein family HMM TIGR01496 gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0022 CYA_0023 CYA_0023 CYA_0023 21788 21895 - hypothetical protein identified by Glimmer2%3B putative gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0023 CYA_0024 CYA_0024 CYA_0024 22084 23175 - GTP-binding protein YchF identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092 gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0024 CYA_0025 CYA_0025 rumA rumA 23329 24723 - 23S rRNA (uracil-5-)-methyltransferase RumA identified by match to protein family HMM PF01938%3B match to protein family HMM PF02475%3B match to protein family HMM PF03602%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479 gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0025 CYA_0026 CYA_0026 CYA_0026 24911 26074 - O-antigen polymerase family protein identified by match to protein family HMM PF04932 gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0026 CYA_0027 CYA_0027 CYA_0027 26202 26567 - ferredoxin%2C 2Fe-2S identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02008 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0027 CYA_0028 CYA_0028 CYA_0028 26693 27145 + putative mannose-6-phosphate isomerase identified by match to protein family HMM PF01050%3B match to protein family HMM PF07883 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0028 CYA_0029 CYA_0029 CYA_0029 27153 29534 - peptidase%2C M48B family identified by match to protein family HMM PF01435 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0029 CYA_0030 CYA_0030 CYA_0030 29715 30161 - transcriptional regulator%2C Fur family identified by match to protein family HMM PF01475 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0030 CYA_0031 CYA_0031 CYA_0031 30488 30868 + conserved hypothetical protein identified by similarity to PIR:AC2234 gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0031 CYA_0032 CYA_0032 CYA_0032 30915 32189 + putative D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase identified by match to protein family HMM PF02113 gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0032 CYA_0033 CYA_0033 CYA_0033 32386 32458 - tRNA-Met tRNA gene32 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0033 CYA_0034 CYA_0034 CYA_0034 32567 33220 + conserved hypothetical protein identified by match to protein family HMM PF01169 gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0034 CYA_0035 CYA_0035 psaL-1 psaL-1 33590 34060 + photosystem I reaction center subunit XI identified by match to protein family HMM PF02605 gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0035 CYA_0036 CYA_0036 psaI psaI 34110 34223 + photosystem I reaction center subunit VIII identified by match to protein family HMM PF00796 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0036 CYA_0037 CYA_0037 CYA_0037 34557 34955 + ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0037 CYA_0038 CYA_0038 CYA_0038 34937 35488 + ISSoc4%2C transposase orfB identified by similarity to PIR:AI1851 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0038 CYA_0039 CYA_0039 CYA_0039 35581 37047 - conserved hypothetical protein gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0039 CYA_0040 CYA_0040 CYA_0040 38881 39174 - conserved hypothetical protein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0040 CYA_0041 CYA_0041 CYA_0041 37430 38884 + putative transporter%2C bacteriochlorophyll delivery (BCD) family identified by similarity to SP:P23462%3B match to protein family HMM PF03209%3B match to protein family HMM PF07690 gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0041 CYA_0042 CYA_0042 CYA_0042 39584 41692 + WD domain%2C G-beta repeat protein identified by match to protein family HMM PF00400 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0042 CYA_0043 CYA_0043 CYA_0043 41742 43040 + amine oxidase%2C flavin-containing identified by match to protein family HMM PF01266%3B match to protein family HMM PF01593 gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0043 CYA_0044 CYA_0044 CYA_0044 43128 43799 + putative membrane protein gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0044 CYA_0045 CYA_0045 CYA_0045 43925 44719 + putative membrane protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0045 CYA_0046 CYA_0046 trmU trmU 44778 45890 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase identified by match to protein family HMM PF03054%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00420 gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0046 CYA_0047 CYA_0047 CYA_0047 45989 46711 - PBS lyase HEAT-like repeat protein identified by match to protein family HMM PF03130 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0047 CYA_0048 CYA_0048 CYA_0048 46915 47829 + hypothetical protein identified by Glimmer2%3B putative gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0048 CYA_0049 CYA_0049 CYA_0049 48013 48570 - conserved hypothetical protein identified by similarity to GB:BAC89600.1 gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0049 CYA_0050 CYA_0050 CYA_0050 48908 49837 + TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0050 CYA_0051 CYA_0051 CYA_0051 49892 51004 - oligopeptide ABC transporter%2C permease protein identified by similarity to SP:P42063%3B match to protein family HMM PF00528 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0051 CYA_0052 CYA_0052 CYA_0052 51170 51670 - conserved hypothetical protein identified by similarity to PIR:AE2426 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0052 CYA_0053 CYA_0053 CYA_0053 51700 52647 - ISSoc4%2C transposase orfAB identified by similarity to GB:AAC97588.1 gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0053 CYA_0054 CYA_0054 CYA_0054 50663 51715 + hypothetical protein identified by Glimmer2%3B putative gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0054 CYA_0055 CYA_0055 selD selD 52802 53860 - selenide%2C water dikinase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00476 gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0055 CYA_0056 CYA_0056 CYA_0056 57450 57725 - glutaredoxin family protein identified by match to protein family HMM PF05768 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0056 CYA_0057 CYA_0057 dnaE dnaE 53979 57464 + DNA polymerase III%2C alpha subunit identified by similarity to SP:O34623%3B match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0057 CYA_0058 CYA_0058 CYA_0058 57735 58562 - hydrolase%2C carbon-nitrogen family identified by match to protein family HMM PF00795 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0058 CYA_0059 CYA_0059 CYA_0059 58599 58820 - conserved hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0059 CYA_0060 CYA_0060 CYA_0060 59052 59795 - conserved hypothetical protein gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0060 CYA_0061 CYA_0061 CYA_0061 59792 60373 - RNA polymerase sigma-70 factor family identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0061 CYA_0062 CYA_0062 CYA_0062 60603 61409 - putative lipoprotein gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0062 CYA_0063 CYA_0063 CYA_0063 61552 61668 - hypothetical protein identified by Glimmer2%3B putative gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0063 CYA_0064 CYA_0064 CYA_0064 61714 62496 - putative membrane protein identified by match to protein family HMM PF06182 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0064 CYA_0065 CYA_0065 CYA_0065 62514 63257 - conserved hypothetical protein identified by similarity to PIR:AB2146 gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0065 CYA_0066 CYA_0066 CYA_0066 63306 63791 - FHA domain protein identified by match to protein family HMM PF00498 gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0066 CYA_0067 CYA_0067 CYA_0067 64004 65327 - ISSoc3%2C orfB transposase%2C insertion%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0067 CYA_0068 CYA_0068 CYA_0068 65283 65759 + ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0068 CYA_0069 CYA_0069 CYA_0069 66081 66722 + conserved hypothetical protein identified by similarity to PIR:AH1812 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0069 CYA_0070 CYA_0070 CYA_0070 66762 67652 + conserved domain protein gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0070 CYA_0071 CYA_0071 CYA_0071 67998 68465 - conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF03733 pseudogene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0071 CYA_0072 CYA_0072 chlP chlP 68588 69808 + geranylgeranyl reductase identified by match to protein family HMM PF01494%3B match to protein family HMM TIGR02023%3B match to protein family HMM TIGR02028%3B match to protein family HMM TIGR02032 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0072 CYA_0073 CYA_0073 CYA_0073 69815 70660 - hypothetical protein identified by Glimmer2%3B putative gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0073 CYA_0074 CYA_0074 secD secD 71021 72367 + protein-export membrane protein SecD identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0074 CYA_0075 CYA_0075 secF secF 72364 73359 + protein-export membrane protein SecF identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0075 CYA_0076 CYA_0076 CYA_0076 73398 75167 - conserved hypothetical protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0076 CYA_0077 CYA_0077 murF murF 75903 77240 + UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase identified by similarity to SP:P96613%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01143 gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0077 CYA_0078 CYA_0078 CYA_0078 77338 77559 + conserved hypothetical protein identified by similarity to GB:BAC90887.1 gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0078 CYA_0079 CYA_0079 CYA_0079 77913 78449 + fasciclin domain protein identified by match to protein family HMM PF02469 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0079 CYA_0080 CYA_0080 CYA_0080 78557 79003 - hypothetical protein identified by Glimmer2%3B putative gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0080 CYA_0081 CYA_0081 miaA miaA 80829 81851 - tRNA delta(2)-isopentenylpyrophosphate transferase identified by similarity to SP:P16384%3B match to protein family HMM PF01715%3B match to protein family HMM TIGR00174 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0081 CYA_0082 CYA_0082 menD menD 79112 80905 + 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase identified by match to protein family HMM PF02776%3B match to protein family HMM TIGR00173 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0082 CYA_0083 CYA_0083 CYA_0083 82003 82824 + conserved hypothetical protein identified by similarity to GB:BAC90495.1 gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0083 CYA_0084 CYA_0084 rpe rpe 82982 83692 - ribulose-phosphate 3-epimerase identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163 gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0084 CYA_0085 CYA_0085 CYA_0085 83852 84037 - hypothetical protein identified by Glimmer2%3B putative gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0085 CYA_0086 CYA_0086 CYA_0086 84185 84595 + glyoxalase family protein identified by match to protein family HMM PF00903 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0086 CYA_0087 CYA_0087 CYA_0087 86175 87005 - putative undecaprenol kinase identified by match to protein family HMM PF02673%3B match to protein family HMM TIGR00753 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0087 CYA_0088 CYA_0088 CYA_0088 84592 86178 + carbohydrate kinase family protein identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197 gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0088 CYA_0089 CYA_0089 CYA_0089 87209 87829 - conserved hypothetical protein identified by similarity to GB:BAC92187.1 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0089 CYA_0090 CYA_0090 CYA_0090 88002 88187 - conserved hypothetical protein identified by match to protein family HMM PF01737 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0090 CYA_0091 CYA_0091 CYA_0091 88306 89487 - ISSoc1%2C transposase identified by match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0091 CYA_0092 CYA_0092 CYA_0092 89675 90367 - conserved hypothetical integral membrane protein identified by match to protein family HMM PF02592%3B match to protein family HMM TIGR00697 gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0092 CYA_0093 CYA_0093 CYA_0093 90367 91023 - response regulator identified by match to protein family HMM PF00072 gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0093 CYA_0094 CYA_0094 CYA_0094 91262 92380 + methyltransferase%2C UbiE/COQ5 family identified by match to protein family HMM PF01209 gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0094 CYA_0095 CYA_0095 CYA_0095 92497 92991 + hypothetical protein identified by Glimmer2%3B putative gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0095 CYA_0096 CYA_0096 CYA_0096 93105 93449 + conserved hypothetical protein identified by similarity to PIR:AH1833 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0096 CYA_0097 CYA_0097 CYA_0097 93643 95199 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0097 CYA_0098 CYA_0098 CYA_0098 95249 95350 + hypothetical protein identified by Glimmer2%3B putative gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0098 CYA_0099 CYA_0099 CYA_0099 95382 96572 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0099 CYA_0100 CYA_0100 CYA_0100 96917 98413 + GAF/SpoIIE domain protein identified by match to protein family HMM PF01590%3B match to protein family HMM PF07228 gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0100 CYA_0101 CYA_0101 CYA_0101 98709 98816 - hypothetical protein identified by Glimmer2%3B putative gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0101 CYA_0102 CYA_0102 CYA_0102 98507 98725 + conserved hypothetical protein gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0102 CYA_0103 CYA_0103 argH argH 98857 100326 + argininosuccinate lyase identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00838 gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0103 CYA_0104 CYA_0104 CYA_0104 100418 101038 + conserved hypothetical protein gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0104 CYA_0105 CYA_0105 CYA_0105 101454 101705 + hypothetical protein identified by Glimmer2%3B putative gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0105 CYA_0106 CYA_0106 CYA_0106 103038 103166 - hypothetical protein identified by Glimmer2%3B putative gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0106 CYA_0107 CYA_0107 CYA_0107 101922 103049 + UDP-N-acetylglucosamine 2-epimerase identified by match to protein family HMM PF02350%3B match to protein family HMM TIGR00236 gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0107 CYA_0108 CYA_0108 CYA_0108 103453 103701 - hypothetical protein identified by Glimmer2%3B putative gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0108 CYA_0109 CYA_0109 ftsZ ftsZ 104219 105340 + cell division protein FtsZ identified by match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0109 CYA_0110 CYA_0110 ddlB ddlB 105410 106381 + D-alanine--D-alanine ligase B identified by similarity to SP:P07862%3B match to protein family HMM PF01820%3B match to protein family HMM PF07478%3B match to protein family HMM TIGR01205 gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0110 CYA_0111 CYA_0111 CYA_0111 106401 106871 - hypothetical protein identified by Glimmer2%3B putative gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0111 CYA_0112 CYA_0112 chlM chlM 107039 107704 + magnesium protoporphyrin O-methyltransferase identified by match to protein family HMM PF07109%3B match to protein family HMM TIGR02021 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0112 CYA_0113 CYA_0113 CYA_0113 107756 108475 - PBS lyase HEAT-like repeat protein identified by match to protein family HMM PF02985%3B match to protein family HMM PF03130 gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0113 CYA_0114 CYA_0114 CYA_0114 108623 109369 - peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type identified by similarity to SP:P35137%3B match to protein family HMM PF00160 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0114 CYA_0115 CYA_0115 CYA_0115 109442 110236 - hypothetical protein identified by Glimmer2%3B putative gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0115 CYA_0116 CYA_0116 CYA_0116 110298 111221 - conserved hypothetical protein identified by similarity to PIR:S76405%3B match to protein family HMM PF07466 gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0116 CYA_0117 CYA_0117 CYA_0117 111443 113350 + endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0117 CYA_0118 CYA_0118 cbiD cbiD 113491 114609 - cobalamin biosynthesis protein CbiD identified by match to protein family HMM PF01888%3B match to protein family HMM TIGR00312 gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0118 CYA_0119 CYA_0119 CYA_0119 114833 115186 + conserved hypothetical protein identified by similarity to GB:BAC88346.1 gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0119 CYA_0120 CYA_0120 def-1 def-1 115188 115784 - peptide deformylase identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0120 CYA_0121 CYA_0121 CYA_0121 116244 116555 - conserved hypothetical protein identified by similarity to GB:BAD78811.1 gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0121 CYA_0122 CYA_0122 CYA_0122 116559 116885 - conserved hypothetical protein identified by similarity to PIR:AD2369 gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0122 CYA_0123 CYA_0123 CYA_0123 116885 117061 - phycobilisome degradation family protein gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0123 CYA_0124 CYA_0124 CYA_0124 117159 117344 - hypothetical protein identified by Glimmer2%3B putative gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0124 CYA_0125 CYA_0125 CYA_0125 117441 117692 + putative RNA-binding protein identified by match to protein family HMM PF00076 gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0125 CYA_0126 CYA_0126 CYA_0126 117811 119115 + putative nuclease SbcCD%2C D subunit identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00619 gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0126 CYA_0127 CYA_0127 CYA_0127 119457 119702 + conserved hypothetical protein identified by similarity to GB:BAB50217.1%3B match to protein family HMM PF04226 gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0127 CYA_0128 CYA_0128 speA speA 119962 121887 - arginine decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01273 gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0128 CYA_0129 CYA_0129 pstS-1 pstS-1 122379 123428 + phosphate ABC transporter%2C phosphate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR00975 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0129 CYA_0130 CYA_0130 dnaK-1 dnaK-1 123678 125564 + chaperone protein DnaK identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0130 CYA_0131 CYA_0131 CYA_0131 126728 128053 - putative glycolate oxidase%2C iron-sulfur subunit identified by match to protein family HMM PF00037%3B match to protein family HMM PF02754 gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0131 CYA_0132 CYA_0132 CYA_0132 125763 126731 + DnaJ family protein identified by match to protein family HMM PF00226%3B match to protein family HMM PF01556 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0132 CYA_0133 CYA_0133 CYA_0133 128591 130471 - long-chain-fatty-acid-CoA ligase-like protein identified by similarity to GB:BAD78814.1%3B match to protein family HMM PF00501 gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0133 CYA_0134 CYA_0134 CYA_0134 128274 128594 + conserved hypothetical protein identified by similarity to GB:BAC91314.1 gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0134 CYA_0135 CYA_0135 cas2-1 cas2-1 130865 131179 - CRISPR-associated protein Cas2 identified by match to protein family HMM TIGR01573 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0135 CYA_0136 CYA_0136 CYA_0136 131131 131403 - conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0136 CYA_0137 CYA_0137 CYA_0137 131558 133147 - putative membrane protein gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0137 CYA_0138 CYA_0138 CYA_0138 134068 134361 - conserved hypothetical protein%2C truncation gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0138 CYA_0139 CYA_0139 CYA_0139 134674 135246 - conserved hypothetical protein identified by match to protein family HMM PF05685 gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0139 CYA_0140 CYA_0140 CYA_0140 135265 135906 - conserved hypothetical protein identified by similarity to PIR:AE2046%3B match to protein family HMM PF05685 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0140 CYA_0141 CYA_0141 CYA_0141 136248 136559 - ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0141 CYA_0142 CYA_0142 CYA_0142 136943 137164 - CAB/ELIP/HLIP family protein gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0142 CYA_0143 CYA_0143 ilvA ilvA 137266 138777 - threonine dehydratase identified by match to protein family HMM PF00291%3B match to protein family HMM PF00585%3B match to protein family HMM TIGR01124 gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0143 CYA_0144 CYA_0144 CYA_0144 138937 139419 + pyridoxamine 5'-phosphate oxidase family protein identified by match to protein family HMM PF01243 gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0144 CYA_0145 CYA_0145 CYA_0145 139456 140352 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0145 CYA_0146 CYA_0146 CYA_0146 140472 141203 + glycosyl transferase%2C WecB/TagA/CpsF family identified by match to protein family HMM PF03808%3B match to protein family HMM TIGR00696 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0146 CYA_0147 CYA_0147 ftsE ftsE 141729 142415 + cell division ATP-binding protein FtsE identified by similarity to SP:P10115%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02673 gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0147 CYA_0148 CYA_0148 metE-1 metE-1 142592 144856 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase identified by similarity to SP:P80877%3B match to protein family HMM PF01717%3B match to protein family HMM TIGR01371 gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0148 CYA_0149 CYA_0149 CYA_0149 145761 147386 + peptide/opine/nickel ABC transporter (PepT) family%2C substrate-binding protein identified by match to protein family HMM PF00496 gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0149 CYA_0150 CYA_0150 CYA_0150 147371 148372 + peptide/opine/nickel ABC transporter (PepT) family%2C permease protein identified by similarity to SP:P42062%3B match to protein family HMM PF00528 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0150 CYA_0151 CYA_0151 CYA_0151 148369 149262 + peptide/opine/nickel ABC transporter (PepT) family%2C permease protein identified by similarity to SP:P26904%3B match to protein family HMM PF00528 gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0151 CYA_0152 CYA_0152 CYA_0152 149267 150196 + peptide/opine/nickel uptake ABC transporter (PepT) family%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0152 CYA_0153 CYA_0153 CYA_0153 150183 150857 + peptide/opine/nickel uptake ABC transporter (PepT) family%2C ATP-binding protein identified by similarity to GB:AAC67221.1%3B match to protein family HMM PF00005 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0153 CYA_0154 CYA_0154 CYA_0154 150950 151867 + putative permease identified by match to protein family HMM PF02687 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0154 CYA_0155 CYA_0155 CYA_0155 151961 152200 + putative DNA-directed RNA polymerase%2C omega subunit gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0155 CYA_0156 CYA_0156 CYA_0156 152388 152861 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0156 CYA_0157 CYA_0157 CYA_0157 154078 154842 - transporter%2C small conductance mechanosensitive ion channel (MscS) family identified by match to protein family HMM PF00924 gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0157 CYA_0158 CYA_0158 CYA_0158 152817 154088 + ISSoc3%2C orfB transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0158 CYA_0159 CYA_0159 cax cax 154882 156000 - calcium/proton exchanger identified by match to protein family HMM PF01699%3B match to protein family HMM TIGR00378 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0159 CYA_0160 CYA_0160 CYA_0160 156188 156946 - conserved hypothetical protein identified by similarity to PIR:AB2317 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0160 CYA_0161 CYA_0161 coaBC coaBC 157001 158224 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase identified by match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0161 CYA_0162 CYA_0162 CYA_0162 158574 158942 + conserved hypothetical protein identified by similarity to PIR:AB2066 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0162 CYA_0163 CYA_0163 CYA_0163 159202 159990 + hypothetical protein identified by Glimmer2%3B putative gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0163 CYA_0164 CYA_0164 ubiH ubiH 161686 162930 - 2-octaprenyl-6-methoxyphenol hydroxylase identified by similarity to SP:P25534%3B match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0164 CYA_0165 CYA_0165 CYA_0165 159947 161716 + conserved hypothetical protein identified by similarity to GB:BAC09647.1%3B match to protein family HMM PF01935 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0165 CYA_0166 CYA_0166 CYA_0166 162933 163925 - cyclopropane-fatty-acyl-phospholipid synthase family protein identified by match to protein family HMM PF02353 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0166 CYA_0167 CYA_0167 metE-2 metE-2 164140 166383 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase identified by similarity to SP:P80877%3B match to protein family HMM PF01717%3B match to protein family HMM TIGR01371 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0167 CYA_0168 CYA_0168 CYA_0168 167006 167083 - tRNA-Arg tRNA gene167 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0168 CYA_0169 CYA_0169 moaE moaE 167117 167602 - molybdopterin converting factor%2C subunit 2 identified by match to protein family HMM PF02391 gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0169 CYA_0170 CYA_0170 CYA_0170 167603 167866 - putative molybdopterin converting factor%2C subunit 1 identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01682 gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0170 CYA_0171 CYA_0171 moaC moaC 167841 168935 - molybdenum cofactor biosynthesis protein C identified by match to protein family HMM PF01967%3B match to protein family HMM TIGR00581 gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0171 CYA_0172 CYA_0172 moaA moaA 168940 169878 - molybdenum cofactor biosynthesis protein A identified by match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666 gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0172 CYA_0173 CYA_0173 moeA moeA 169880 171043 - molybdopterin biosynthesis protein MoeA identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0173 CYA_0174 CYA_0174 CYA_0174 171021 171494 - conserved hypothetical protein identified by similarity to GB:BAD78799.1%3B match to protein family HMM TIGR02664 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0174 CYA_0175 CYA_0175 CYA_0175 171491 173593 - nitrate reductase%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to SP:P39458%3B match to protein family HMM PF01568 pseudogene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0175 CYA_0177 CYA_0177 CYA_0177 174066 174407 + pilin domain protein identified by similarity to PIR:S70530 gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0177 CYA_0178 CYA_0178 pyrC pyrC 174653 175975 + dihydroorotase identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR00857 gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0178 CYA_0179 CYA_0179 CYA_0179 176347 176748 + conserved hypothetical protein identified by similarity to GB:BAD71865.1 gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0179 CYA_0180 CYA_0180 clpB clpB 176758 179400 - ATP-dependent chaperone protein ClpB identified by similarity to SP:P03815%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0180 CYA_0181 CYA_0181 zam zam 179593 181878 - acetazolamide conferring resistance protein Zam identified by similarity to SP:Q46363%3B match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0181 CYA_0182 CYA_0182 phoU phoU 181936 182577 - phosphate transport system regulatory protein PhoU identified by match to protein family HMM PF01895%3B match to protein family HMM TIGR02135 gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0182 CYA_0183 CYA_0183 CYA_0183 182785 184113 + conserved hypothetical protein identified by similarity to PIR:AG2237 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0183 CYA_0184 CYA_0184 treZ treZ 185641 187449 - malto-oligosyltrehalose trehalohydrolase identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02402 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0184 CYA_0185 CYA_0185 CYA_0185 184130 185644 + oxidoreductase%2C FAD-binding identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494 gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0185 CYA_0186 CYA_0186 CYA_0186 187712 187861 - hypothetical protein identified by Glimmer2%3B putative gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0186 CYA_0187 CYA_0187 CYA_0187 187888 188067 + conserved hypothetical protein gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0187 CYA_0188 CYA_0188 rpsU rpsU 188130 188315 - ribosomal protein S21 identified by match to protein family HMM PF01165%3B match to protein family HMM TIGR00030 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0188 CYA_0189 CYA_0189 CYA_0189 188402 189658 - trypsin domain lipoprotein identified by match to protein family HMM PF00089%3B match to protein family HMM PF05738 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0189 CYA_0191 CYA_0191 CYA_0191 189921 190542 + ParA homolog%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0191 CYA_0192 CYA_0192 CYA_0192 190539 190877 + conserved hypothetical protein identified by similarity to GB:BAD02092.1 gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0192 CYA_0193 CYA_0193 dxr dxr 191016 192194 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase identified by match to protein family HMM PF02670%3B match to protein family HMM TIGR00243 gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0193 CYA_0194 CYA_0194 CYA_0194 192254 194020 + heavy metal ABC transporter (HMT) family%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0194 CYA_0195 CYA_0195 carA carA 195697 196884 - carbamoyl-phosphate synthase%2C small subunit identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368 gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0195 CYA_0196 CYA_0196 murE murE 194111 195700 + UDP-N-acetylmuramyl-tripeptide synthetase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01085 gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0196 CYA_0197 CYA_0197 CYA_0197 196981 197532 - putative pilin identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0197 CYA_0198 CYA_0198 CYA_0198 197547 198674 - pddD domain protein identified by similarity to SP:Q00517%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0198 CYA_0199 CYA_0199 CYA_0199 198731 199495 - prepilin-type N-terminal cleavage/methylation domain protein identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0199 CYA_0200 CYA_0200 CYA_0200 199553 206794 - conserved domain protein gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0200 CYA_0201 CYA_0201 CYA_0201 206915 207511 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0201 CYA_0202 CYA_0202 CYA_0202 207609 208199 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0202 CYA_0203 CYA_0203 mutM mutM 208311 209162 - formamidopyrimidine-DNA glycosylase identified by match to protein family HMM PF01149%3B match to protein family HMM PF06827%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577 gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0203 CYA_0204 CYA_0204 psaE psaE 209208 209429 - photosystem I reaction center subunit IV identified by similarity to SP:P23809%3B match to protein family HMM PF02427 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0204 CYA_0205 CYA_0205 CYA_0205 209709 209861 + CAB/ELIP/HLIP family protein gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0205 CYA_0206 CYA_0206 nadE nadE 210133 211803 - NAD+ synthetase identified by match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552 gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0206 CYA_0207 CYA_0207 uvrC uvrC 211884 213749 - excinuclease ABC%2C C subunit identified by match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00194 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0207 CYA_0208 CYA_0208 CYA_0208 214082 216415 - penicillin-binding protein%2C 1A family identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074 gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0208 CYA_0209 CYA_0209 CYA_0209 216419 218263 - serine/threonine protein kinase identified by match to protein family HMM PF00069 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0209 CYA_0210 CYA_0210 CYA_0210 218206 218337 - hypothetical protein identified by Glimmer2%3B putative gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0210 CYA_0211 CYA_0211 CYA_0211 218392 219309 + histone deacetylase family protein identified by match to protein family HMM PF00850 gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0211 CYA_0212 CYA_0212 CYA_0212 219321 220040 - protein phosphatase 2C family protein identified by match to protein family HMM PF00481 gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0212 CYA_0213 CYA_0213 CYA_0213 220040 221776 - ABC1 domain protein identified by match to protein family HMM PF03109 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0213 CYA_0214 CYA_0214 CYA_0214 221773 222084 - conserved hypothetical protein gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0214 CYA_0215 CYA_0215 cpcG1 cpcG1 222224 222949 - phycobilisome rod-core linker polypeptide cpcG1 identified by similarity to SP:P29986%3B match to protein family HMM PF00427 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0215 CYA_0216 CYA_0216 cpcF cpcF 222992 223708 - phycocyanin alpha subunit phycocyanobilin lyase%2C CpcF subunit identified by match to protein family HMM PF02985%3B match to protein family HMM PF03130 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0216 CYA_0217 CYA_0217 cpcE-1 cpcE-1 223721 224473 - phycocyanin alpha subunit phycocyanobilin lyase%2C CpcE subunit identified by match to protein family HMM PF02985%3B match to protein family HMM PF03130 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0217 CYA_0218 CYA_0218 cpcD cpcD 224564 224824 - phycobilisome 8.9 kDa linker polypeptide%2C phycocyanin-associated%2C rod identified by similarity to SP:P31966%3B match to protein family HMM PF01383 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0218 CYA_0219 CYA_0219 CYA_0219 224962 225054 - hypothetical protein identified by Glimmer2%3B putative gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0219 CYA_0220 CYA_0220 cpcA-1 cpcA-1 225113 225601 - phycocyanin%2C alpha subunit identified by similarity to SP:P07121%3B match to protein family HMM PF00502 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0220 CYA_0221 CYA_0221 cpcB-1 cpcB-1 225749 226267 - phycocyanin%2C beta subunit identified by match to protein family HMM PF00502%3B match to protein family HMM TIGR01339 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0221 CYA_0222 CYA_0222 CYA_0222 226300 226515 + hypothetical protein identified by Glimmer2%3B putative gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0222 CYA_0223 CYA_0223 trpA-1 trpA-1 226682 227497 - tryptophan synthase%2C alpha subunit identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0223 CYA_0224 CYA_0224 CYA_0224 227551 228951 - hydrophobic amino acid uptake ABC transporter (HAAT) family%2C amino acid-binding protein identified by match to protein family HMM PF01094 gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0224 CYA_0225 CYA_0225 CYA_0225 229067 229282 - hypothetical protein identified by Glimmer2%3B putative gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0225 CYA_0226 CYA_0226 CYA_0226 229317 230522 - ISSoc7%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0226 CYA_0227 CYA_0227 CYA_0227 230628 231440 + conserved hypothetical protein identified by similarity to GB:CAC11720.1 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0227 CYA_0228 CYA_0228 CYA_0228 231451 231828 - polar amino acid uptake ABC transporter (PAAT) family%2C ATP-binding protein%2C truncation identified by similarity to SP:P48243%3B match to protein family HMM PF00005 gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0228 CYA_0229 CYA_0229 CYA_0229 232277 232387 + hypothetical protein identified by Glimmer2%3B putative gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0229 CYA_0230 CYA_0230 gvpG gvpG 232464 232709 + gas vesicle protein G identified by match to protein family HMM PF05120 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0230 CYA_0231 CYA_0231 CYA_0231 232782 233399 + conserved hypothetical protein identified by similarity to GB:BAC89072.1 gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0231 CYA_0232 CYA_0232 CYA_0232 235426 236730 - peptidase inhibitor%2C I4 family identified by match to protein family HMM PF00079 gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0232 CYA_0233 CYA_0233 CYA_0233 233619 235439 + fibronectin-binding protein identified by similarity to GB:AAL85276.1%3B match to protein family HMM PF05670%3B match to protein family HMM PF05833 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0233 CYA_0234 CYA_0234 CYA_0234 236956 237525 + conserved hypothetical protein identified by match to protein family HMM PF02643 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0234 CYA_0235 CYA_0235 CYA_0235 237766 239034 + oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0235 CYA_0236 CYA_0236 CYA_0236 239220 240008 + putative lipoprotein gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0236 CYA_0237 CYA_0237 thyX thyX 240083 240940 + thymidylate synthase%2C flavin-dependent identified by match to protein family HMM PF02511%3B match to protein family HMM TIGR02170 gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0237 CYA_0238 CYA_0238 CYA_0238 240856 241740 + conserved hypothetical protein identified by similarity to GB:CAH39666.1 gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0238 CYA_0239 CYA_0239 CYA_0239 241889 243349 + bacterial sugar transferase family protein identified by match to protein family HMM PF02397 gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0239 CYA_0240 CYA_0240 purC purC 243360 244130 + phosphoribosylaminoimidazole-succinocarboxamide synthase identified by similarity to SP:P12046%3B match to protein family HMM PF01259%3B match to protein family HMM TIGR00081 gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0240 CYA_0241 CYA_0241 CYA_0241 244138 245547 + putative membrane protein gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0241 CYA_0242 CYA_0242 CYA_0242 245744 246574 + conserved hypothetical protein identified by similarity to GB:BAC08994.1 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0242 CYA_0243 CYA_0243 hemC hemC 246676 247608 - porphobilinogen deaminase identified by match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0243 CYA_0244 CYA_0244 CYA_0244 247938 248399 + conserved hypothetical protein identified by similarity to PIR:AD2256 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0244 CYA_0245 CYA_0245 CYA_0245 248588 250033 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0245 CYA_0246 CYA_0246 ilvC ilvC 250107 251099 + ketol-acid reductoisomerase identified by match to protein family HMM PF01450%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00465 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0246 CYA_0247 CYA_0247 serS serS 251123 252430 + seryl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0247 CYA_0248 CYA_0248 CYA_0248 252522 252956 + transcriptional regulator%2C BlaI/MecI/CopY family identified by match to protein family HMM PF03965 gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0248 CYA_0249 CYA_0249 CYA_0249 252953 253825 + conserved hypothetical protein gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0249 CYA_0250 CYA_0250 CYA_0250 253975 254046 + tRNA-Asn tRNA gene247 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0250 CYA_0251 CYA_0251 ppa ppa 254428 254949 + inorganic pyrophosphatase identified by match to protein family HMM PF00719 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0251 CYA_0252 CYA_0252 CYA_0252 255048 255797 + cytochrome c biogenesis membrane protein identified by match to protein family HMM PF02683 gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0252 CYA_0253 CYA_0253 CYA_0253 257307 260417 - sensory box histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0253 CYA_0254 CYA_0254 CYA_0254 255874 257310 + putative cytochrome c-type biogenesis protein ResB identified by match to protein family HMM PF05140 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0254 CYA_0255 CYA_0255 CYA_0255 261102 262256 + FAD-binding protein identified by match to protein family HMM PF01565 gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0255 CYA_0256 CYA_0256 CYA_0256 262295 263595 - ISSoc3%2C orfB transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0256 CYA_0257 CYA_0257 CYA_0257 263551 264040 + ISSoc3%2C orfA transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0257 CYA_0258 CYA_0258 CYA_0258 264137 265249 - oxidoreductase%2C FAD-binding identified by match to protein family HMM PF01266 gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0258 CYA_0259 CYA_0259 psbY psbY 265283 265435 - photosystem II protein PsbY identified by match to protein family HMM PF06298 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0259 CYA_0260 CYA_0260 CYA_0260 265440 265550 - hypothetical protein identified by Glimmer2%3B putative gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0260 CYA_0261 CYA_0261 CYA_0261 265865 266866 - hypothetical protein identified by Glimmer2%3B putative gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0261 CYA_0262 CYA_0262 CYA_0262 267160 268629 - glutamate-cysteine ligase%2C family 2 identified by match to protein family HMM PF04107 gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0262 CYA_0263 CYA_0263 CYA_0263 268685 270631 - alpha-amylase family protein identified by match to protein family HMM PF00128 gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0263 CYA_0264 CYA_0264 CYA_0264 270708 272060 - tldD/pmbA family protein identified by match to protein family HMM PF01523 gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0264 CYA_0265 CYA_0265 CYA_0265 272214 272795 - hypothetical protein identified by Glimmer2%3B putative gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0265 CYA_0266 CYA_0266 CYA_0266 272782 273051 + conserved hypothetical protein identified by match to protein family HMM TIGR02450 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0266 CYA_0267 CYA_0267 ispF ispF 273344 273817 + 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151 gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0267 CYA_0268 CYA_0268 CYA_0268 274000 275781 + peptide/opine/nickel ABC transporter (PepT) family%2C substrate-binding protein identified by match to protein family HMM PF00496 gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0268 CYA_0269 CYA_0269 CYA_0269 275783 277948 - glycogen debranching enzyme family protein identified by match to protein family HMM PF06202 gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0269 CYA_0270 CYA_0270 CYA_0270 278035 279093 - glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0270 CYA_0271 CYA_0271 CYA_0271 279213 279323 - hypothetical protein identified by Glimmer2%3B putative gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0271 CYA_0272 CYA_0272 CYA_0272 279300 279437 + hypothetical protein identified by Glimmer2%3B putative gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0272 CYA_0273 CYA_0273 CYA_0273 279449 279994 + conserved hypothetical protein identified by similarity to PIR:AE2202%3B match to protein family HMM PF04134 gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0273 CYA_0274 CYA_0274 CYA_0274 280033 281727 + putative lipoprotein gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0274 CYA_0276 CYA_0276 CYA_0276 281997 283048 + ATPase%2C AAA family%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF00004 pseudogene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0276 CYA_0277 CYA_0277 purF purF 283490 285079 + amidophosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134 gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0277 CYA_0278 CYA_0278 def-2 def-2 285108 285635 + peptide deformylase identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0278 CYA_0279 CYA_0279 CYA_0279 285646 286068 + conserved hypothetical protein identified by similarity to PIR:AE2202%3B match to protein family HMM PF04134 gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0279 CYA_0280 CYA_0280 CYA_0280 286497 288758 + thrombospondin N-terminal-like domain protein identified by match to protein family HMM PF02210 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0280 CYA_0281 CYA_0281 CYA_0281 289017 289997 + hypothetical protein identified by Glimmer2%3B putative gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0281 CYA_0282 CYA_0282 CYA_0282 291655 292578 - NAD(+)/NADH kinase identified by match to protein family HMM PF01513 gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0282 CYA_0283 CYA_0283 CYA_0283 290261 291658 + ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0283 CYA_0284 CYA_0284 CYA_0284 292733 292846 + hypothetical protein identified by Glimmer2%3B putative gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0284 CYA_0285 CYA_0285 ispE ispE 292938 293867 + 4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00154 gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0285 CYA_0286 CYA_0286 leuC leuC 294018 295421 + 3-isopropylmalate dehydratase%2C large subunit identified by similarity to SP:P30127%3B match to protein family HMM PF00330%3B match to protein family HMM TIGR00170 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0286 CYA_0287 CYA_0287 thiD thiD 295483 296295 - phosphomethylpyrimidine kinase identified by match to protein family HMM TIGR00097 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0287 CYA_0288 CYA_0288 CYA_0288 296528 296728 - hypothetical protein identified by Glimmer2%3B putative gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0288 CYA_0289 CYA_0289 CYA_0289 296798 297106 - ferredoxin%2C 2Fe-2S identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02008 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0289 CYA_0290 CYA_0290 CYA_0290 297115 297372 - conserved hypothetical protein identified by similarity to GB:BAD80164.1 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0290 CYA_0291 CYA_0291 CYA_0291 297419 298483 - RNA methyltransferase%2C TrmH family%2C group 3 identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0291 CYA_0292 CYA_0292 CYA_0292 298516 298947 - RNase3 domain protein identified by match to protein family HMM PF00636 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0292 CYA_0293 CYA_0293 psaL-2 psaL-2 299332 299808 - photosystem I reaction center subunit XI identified by match to protein family HMM PF02605 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0293 CYA_0294 CYA_0294 psaJ psaJ 299934 300053 - photosystem I reaction center subunit IX identified by match to protein family HMM PF01701 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0294 CYA_0295 CYA_0295 psaF psaF 300113 300658 - photosystem I reaction center subunit III identified by similarity to SP:P25899%3B match to protein family HMM PF02507 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0295 CYA_0296 CYA_0296 gidA gidA 301889 303820 - glucose-inhibited division protein A identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00136 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0296 CYA_0297 CYA_0297 gcp gcp 300825 301925 + O-sialoglycoprotein endopeptidase identified by match to protein family HMM PF00814%3B match to protein family HMM TIGR00329 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0297 CYA_0298 CYA_0298 thrC-1 thrC-1 304116 305456 + threonine synthase identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0298 CYA_0299 CYA_0299 CYA_0299 305550 306074 + fasciclin domain protein identified by match to protein family HMM PF02469 gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0299 CYA_0300 CYA_0300 CYA_0300 306111 306386 + MoaD family protein identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01687 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0300 CYA_0301 CYA_0301 CYA_0301 306404 306991 + DNA-3-methyladenine glycosylase identified by match to protein family HMM PF02245%3B match to protein family HMM TIGR00567 gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0301 CYA_0302 CYA_0302 CYA_0302 307008 308276 + conserved hypothetical protein identified by similarity to PIR:H75264 gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0302 CYA_0303 CYA_0303 phrB-1 phrB-1 310546 312012 - deoxyribodipyrimidine photolyase identified by match to protein family HMM PF00875%3B match to protein family HMM PF03441%3B match to protein family HMM TIGR02765 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0303 CYA_0304 CYA_0304 CYA_0304 308636 310549 + NHL repeat domain protein identified by match to protein family HMM PF01436 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0304 CYA_0305 CYA_0305 hup-1 hup-1 312014 312340 - DNA-binding protein HU identified by similarity to SP:P02346%3B match to protein family HMM PF00216 gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0305 CYA_0306 CYA_0306 CYA_0306 312458 312718 - conserved hypothetical protein identified by similarity to PIR:S36975 gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0306 CYA_0307 CYA_0307 pmgA pmgA 312834 313277 + pmgA protein identified by similarity to GB:BAA20429.1 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0307 CYA_0308 CYA_0308 CYA_0308 313288 315018 - conserved hypothetical protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0308 CYA_0309 CYA_0309 pheT pheT 315172 317649 + phenylalanyl-tRNA synthetase%2C beta subunit identified by match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0309 CYA_0310 CYA_0310 argB argB 317853 318755 + acetylglutamate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00761 gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0310 CYA_0311 CYA_0311 CYA_0311 318965 320803 + ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0311 CYA_0312 CYA_0312 CYA_0312 321183 321554 + conserved hypothetical protein identified by similarity to GB:BAD79291.1 gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0312 CYA_0313 CYA_0313 CYA_0313 321745 323256 + ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0313 CYA_0314 CYA_0314 CYA_0314 323388 323738 + conserved hypothetical protein identified by similarity to GB:BAC09429.1%3B match to protein family HMM PF06868 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0314 CYA_0315 CYA_0315 pgk pgk 323857 325095 - phosphoglycerate kinase identified by similarity to SP:P74421%3B match to protein family HMM PF00162 gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0315 CYA_0316 CYA_0316 pds pds 325273 326691 + phytoene desaturase identified by similarity to SP:P26294%3B match to protein family HMM PF01266%3B match to protein family HMM PF01593%3B match to protein family HMM TIGR02731 gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0316 CYA_0317 CYA_0317 crtB crtB 326768 327703 + phytoene synthase identified by similarity to SP:P37294%3B match to protein family HMM PF00494 gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0317 CYA_0318 CYA_0318 CYA_0318 328539 333596 - ATP-dependent helicase%2C DEAD/DEAH box family identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0318 CYA_0319 CYA_0319 CYA_0319 327727 328542 + ABC-2 transporter%2C permease protein identified by match to protein family HMM PF01061 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0319 CYA_0320 CYA_0320 CYA_0320 333689 333895 - conserved hypothetical protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0320 CYA_0321 CYA_0321 CYA_0321 333924 338501 - conserved hypothetical protein identified by match to protein family HMM PF04480 gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0321 CYA_0322 CYA_0322 CYA_0322 338498 341392 - putative helicase identified by match to protein family HMM PF00271 gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0322 CYA_0323 CYA_0323 CYA_0323 341673 342188 + cyclic nucleotide-binding protein%2C trunction identified by match to protein family HMM PF00027 gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0323 CYA_0324 CYA_0324 CYA_0324 343377 343979 - 2'%2C5' RNA ligase family protein identified by match to protein family HMM PF02834 gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0324 CYA_0325 CYA_0325 gap-2 gap-2 342373 343392 + glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0325 CYA_0326 CYA_0326 CYA_0326 344559 345191 - 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553%3B match to protein family HMM TIGR00530 gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0326 CYA_0327 CYA_0327 CYA_0327 344149 344571 + ferredoxin-like protein identified by similarity to PIR:JC7085 gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0327 CYA_0328 CYA_0328 CYA_0328 345511 346445 + ISSoc5%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0328 CYA_0329 CYA_0329 CYA_0329 346459 347148 - conserved hypothetical protein identified by match to protein family HMM PF05685 gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0329 CYA_0330 CYA_0330 CYA_0330 347318 348421 + FAD-dependent oxidoreductase identified by match to protein family HMM PF01266 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0330 CYA_0331 CYA_0331 CYA_0331 348529 348828 + Ycf65-like protein identified by match to protein family HMM PF04839 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0331 CYA_0332 CYA_0332 groL-1 groL-1 349032 350660 + chaperonin GroEL identified by similarity to SP:P45746%3B match to protein family HMM PF00118%3B match to protein family HMM TIGR02348 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0332 CYA_0333 CYA_0333 lysS lysS 350698 352224 - lysyl-tRNA synthetase identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0333 CYA_0334 CYA_0334 CYA_0334 352271 353185 - conserved hypothetical protein identified by similarity to PIR:AC2464%3B match to protein family HMM PF05685 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0334 CYA_0335 CYA_0335 radA radA 353548 354966 - DNA repair protein RadA identified by match to protein family HMM TIGR00416 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0335 CYA_0336 CYA_0336 aroC aroC 355019 356155 - chorismate synthase identified by similarity to SP:P23353%3B match to protein family HMM PF01264%3B match to protein family HMM TIGR00033 gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0336 CYA_0337 CYA_0337 CYA_0337 356210 356944 - putative transcriptional activator%2CBaf family identified by match to protein family HMM PF03309%3B match to protein family HMM TIGR00671 gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0337 CYA_0338 CYA_0338 CYA_0338 356934 357665 - conserved hypothetical protein identified by similarity to SP:Q8R8N9%3B match to protein family HMM PF01871 gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0338 CYA_0339 CYA_0339 trpB trpB 357668 358867 - tryptophan synthase%2C beta subunit identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00263 gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0339 CYA_0340 CYA_0340 CYA_0340 359124 359483 + conserved hypothetical protein identified by similarity to GB:BAD01972.1 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0340 CYA_0341 CYA_0341 CYA_0341 359627 360145 + conserved hypothetical protein identified by similarity to GB:BAB48108.1 gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0341 CYA_0342 CYA_0342 CYA_0342 360158 360754 + conserved hypothetical protein identified by similarity to GB:BAC91744.1 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0342 CYA_0343 CYA_0343 CYA_0343 360754 362295 + DnaK family protein identified by match to protein family HMM PF00012 gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0343 CYA_0344 CYA_0344 CYA_0344 362387 362509 + hypothetical protein identified by Glimmer2%3B putative gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0344 CYA_0345 CYA_0345 CYA_0345 362789 364069 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0345 CYA_0346 CYA_0346 CYA_0346 363924 364541 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0346 CYA_0347 CYA_0347 CYA_0347 364609 364743 - hypothetical protein identified by Glimmer2%3B putative gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0347 CYA_0348 CYA_0348 CYA_0348 365438 366295 + HAD hydrolase%2C IIB family identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0348 CYA_0349 CYA_0349 CYA_0349 366346 368466 + UvrD/REP helicase domain protein identified by match to protein family HMM PF00580 gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0349 CYA_0350 CYA_0350 nusB nusB 368586 369452 + transcription antitermination factor NusB identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951 gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0350 CYA_0351 CYA_0351 CYA_0351 369842 369913 - tRNA-Gly tRNA gene347 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0351 CYA_0352 CYA_0352 CYA_0352 370022 370573 + NADPH-dependent FMN reductase identified by match to protein family HMM PF03358 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0352 CYA_0353 CYA_0353 CYA_0353 370637 371056 - putative lipoprotein gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0353 CYA_0354 CYA_0354 CYA_0354 372868 374061 - glycosyl transferase%2C group 1 family protein identified by similarity to GB:CAA43914.1%3B match to protein family HMM PF00534 gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0354 CYA_0355 CYA_0355 CYA_0355 371225 372874 + hypothetical protein identified by Glimmer2%3B putative gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0355 CYA_0356 CYA_0356 CYA_0356 374064 374477 - conserved hypothetical protein identified by similarity to GB:BAD78263.1 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0356 CYA_0357 CYA_0357 CYA_0357 374567 375007 - hypothetical protein identified by Glimmer2%3B putative gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0357 CYA_0358 CYA_0358 CYA_0358 375090 375971 - cation transporter%2C voltage-gated ion channel (VIC) family identified by match to protein family HMM PF00520%3B match to protein family HMM PF07885 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0358 CYA_0359 CYA_0359 gatB gatB 376702 378174 - glutamyl-tRNA(Gln) amidotransferase%2C B subunit identified by match to protein family HMM PF01162%3B match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0359 CYA_0360 CYA_0360 maf maf 376112 376705 + septum formation protein MaF identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0360 CYA_0361 CYA_0361 CYA_0361 378240 378395 - conserved hypothetical protein identified by similarity to PIR:AB1916 gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0361 CYA_0362 CYA_0362 CYA_0362 378672 378827 - putative acylphosphatase identified by match to protein family HMM PF00708 gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0362 CYA_0363 CYA_0363 CYA_0363 378824 379144 - hypothetical protein identified by Glimmer2%3B putative gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0363 CYA_0364 CYA_0364 CYA_0364 379184 380626 + aldehyde dehydrogenase family protein identified by match to protein family HMM PF00171 gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0364 CYA_0365 CYA_0365 chlD chlD 380752 382770 + magnesium chelatase%2C ATPase subunit D identified by match to protein family HMM PF01078%3B match to protein family HMM TIGR02031 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0365 CYA_0366 CYA_0366 CYA_0366 382852 383601 + conserved hypothetical protein identified by similarity to PIR:AC2382 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0366 CYA_0367 CYA_0367 CYA_0367 383965 384408 - glyoxalase family protein identified by match to protein family HMM PF00903 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0367 CYA_0368 CYA_0368 mreB mreB 384547 385575 + rod shape-determining protein identified by similarity to SP:Q01465%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0368 CYA_0369 CYA_0369 mreC mreC 385636 386379 + rod shape-determining protein identified by match to protein family HMM PF04085 gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0369 CYA_0370 CYA_0370 mreD mreD 386366 386995 + rod shape-determining protein MreD identified by match to protein family HMM PF04093 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0370 CYA_0371 CYA_0371 CYA_0371 387283 387510 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0371 CYA_0372 CYA_0372 CYA_0372 387549 388073 - hypothetical protein identified by Glimmer2%3B putative gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0372 CYA_0373 CYA_0373 CYA_0373 388505 390457 - serine/threonine protein kinase identified by similarity to GB:AAD42859.1%3B match to protein family HMM PF00069%3B match to protein family HMM PF07719 gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0373 CYA_0374 CYA_0374 CYA_0374 391400 392383 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0374 CYA_0375 CYA_0375 CYA_0375 390588 391445 + inositol monophosphate family protein identified by match to protein family HMM PF00459 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0375 CYA_0376 CYA_0376 hemE hemE 392445 393533 - uroporphyrinogen decarboxylase identified by match to protein family HMM PF01208%3B match to protein family HMM TIGR01464 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0376 CYA_0377 CYA_0377 crtE crtE 393758 394651 + geranylgeranyl diphosphate synthase identified by similarity to GB:BAA82613.1%3B match to protein family HMM PF00348 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0377 CYA_0378 CYA_0378 CYA_0378 394648 395193 + conserved hypothetical protein identified by similarity to GB:BAC07572.1%3B match to protein family HMM PF02681 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0378 CYA_0379 CYA_0379 CYA_0379 395236 395853 + hypothetical protein identified by Glimmer2%3B putative gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0379 CYA_0380 CYA_0380 CYA_0380 395885 396721 + conserved hypothetical protein identified by similarity to SP:Q9PD85 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0380 CYA_0381 CYA_0381 CYA_0381 396773 397039 - conserved hypothetical protein identified by similarity to GB:BAC09330.1 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0381 CYA_0382 CYA_0382 CYA_0382 398277 398516 - conserved hypothetical protein identified by similarity to PIR:AI2167 gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0382 CYA_0383 CYA_0383 CYA_0383 397453 398280 + conserved hypothetical protein identified by similarity to PIR:S75306%3B match to protein family HMM PF07082 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0383 CYA_0384 CYA_0384 CYA_0384 398920 399153 + hypothetical protein identified by Glimmer2%3B putative gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0384 CYA_0385 CYA_0385 CYA_0385 399356 400294 - hypothetical protein identified by Glimmer2%3B putative gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0385 CYA_0386 CYA_0386 ribD ribD 400816 401931 - riboflavin biosynthesis protein RibD identified by match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326 gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0386 CYA_0387 CYA_0387 pgi pgi 402053 403651 + glucose-6-phosphate isomerase identified by match to protein family HMM PF00342 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0387 CYA_0388 CYA_0388 opcA opcA 403771 404922 + opcA protein identified by match to protein family HMM TIGR00534 gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0388 CYA_0389 CYA_0389 CYA_0389 405100 405408 - CAB/ELIP/HLIP family protein identified by similarity to SP:P54225 gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0389 CYA_0390 CYA_0390 CYA_0390 405519 405737 - CAB/ELIP/HLIP family protein gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0390 CYA_0391 CYA_0391 CYA_0391 405906 407195 + cysteine desulfurase%2C SufS family identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01979 gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0391 CYA_0392 CYA_0392 CYA_0392 407196 408311 + oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00037%3B match to protein family HMM PF00248 gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0392 CYA_0393 CYA_0393 CYA_0393 408404 408787 - hypothetical protein identified by Glimmer2%3B putative gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0393 CYA_0394 CYA_0394 CYA_0394 408911 409588 + conserved hypothetical protein gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0394 CYA_0395 CYA_0395 CYA_0395 410293 411573 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0395 CYA_0396 CYA_0396 CYA_0396 409596 410339 + conserved hypothetical protein identified by similarity to GB:BAC89907.1 gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0396 CYA_0397 CYA_0397 CYA_0397 411428 412021 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0397 CYA_0398 CYA_0398 tpiA tpiA 412218 412985 + triosephosphate isomerase identified by similarity to SP:Q59994%3B match to protein family HMM PF00121%3B match to protein family HMM TIGR00419 gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0398 CYA_0399 CYA_0399 treY treY 412991 415792 - malto-oligosyltrehalose synthase identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02401 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0399 CYA_0400 CYA_0400 CYA_0400 415943 416356 + hypothetical protein identified by Glimmer2%3B putative gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0400 CYA_0401 CYA_0401 CYA_0401 416555 417418 + peptidase%2C M48A family identified by match to protein family HMM PF01435 gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0401 CYA_0402 CYA_0402 CYA_0402 417443 418339 + kinase%2C pfkB family identified by match to protein family HMM PF00294 gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0402 CYA_0403 CYA_0403 CYA_0403 418343 420067 - ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0403 CYA_0404 CYA_0404 CYA_0404 420172 420726 - conserved hypothetical protein gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0404 CYA_0405 CYA_0405 panE-1 panE-1 420789 421748 - 2-dehydropantoate 2-reductase identified by match to protein family HMM PF02558%3B match to protein family HMM TIGR00745 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0405 CYA_0406 CYA_0406 pyrR pyrR 421806 422360 - pyrR bifunctional protein identified by similarity to SP:P39765%3B match to protein family HMM PF00156 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0406 CYA_0407 CYA_0407 CYA_0407 422501 423031 + pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0407 CYA_0408 CYA_0408 CYA_0408 423116 423829 - heme oxygenase identified by match to protein family HMM PF01126 gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0408 CYA_0409 CYA_0409 rpoB rpoB 424423 427824 + DNA-directed RNA polymerase%2C beta subunit identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0409 CYA_0410 CYA_0410 rpoC1 rpoC1 427924 429807 + DNA-directed RNA polymerase%2C gamma subunit identified by match to protein family HMM PF00623%3B match to protein family HMM PF04997%3B match to protein family HMM TIGR02387 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0410 CYA_0411 CYA_0411 rpoC2 rpoC2 429897 433805 + DNA-directed RNA polymerase%2C beta'' subunit identified by match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02388 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0411 CYA_0412 CYA_0412 CYA_0412 433786 434304 + putative uracil-DNA glycosylase%2C family 4 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0412 CYA_0413 CYA_0413 CYA_0413 434337 434996 - putative transcriptional activator TenA identified by similarity to SP:P25052%3B match to protein family HMM PF03070 gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0413 CYA_0414 CYA_0414 CYA_0414 435204 436229 - conserved hypothetical protein identified by similarity to GB:BAC91086.1 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0414 CYA_0415 CYA_0415 CYA_0415 436363 437094 - conserved hypothetical protein identified by similarity to GB:BAC91087.1 gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0415 CYA_0416 CYA_0416 CYA_0416 437251 437646 - hypothetical protein identified by Glimmer2%3B putative gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0416 CYA_0417 CYA_0417 CYA_0417 437290 437601 + hypothetical protein identified by Glimmer2%3B putative gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0417 CYA_0418 CYA_0418 CYA_0418 437609 438103 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0418 CYA_0419 CYA_0419 gvpV gvpV 438313 438606 + gas vesicle protein V identified by similarity to GB:CAE11908.1 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0419 CYA_0420 CYA_0420 atpD atpD 438981 440414 + ATP synthase F1%2C beta subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0420 CYA_0421 CYA_0421 CYA_0421 440425 441165 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0421 CYA_0422 CYA_0422 CYA_0422 441169 442080 - tetrapyrrole methylase family protein identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0422 CYA_0423 CYA_0423 CYA_0423 442169 442621 + putative transcriptional regulator identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0423 CYA_0424 CYA_0424 cobD-1 cobD-1 442644 443633 + cobalamin biosynthesis protein CobD identified by match to protein family HMM PF03186%3B match to protein family HMM TIGR00380 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0424 CYA_0425 CYA_0425 CYA_0425 443916 444200 - hypothetical protein identified by Glimmer2%3B putative gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0425 CYA_0426 CYA_0426 CYA_0426 444197 444757 - conserved hypothetical protein gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0426 CYA_0427 CYA_0427 rca rca 444839 446062 - ribulose bisphosphate carboxylase/oxygenase activase identified by similarity to SP:Q06721%3B match to protein family HMM PF00004%3B match to protein family HMM PF00101 gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0427 CYA_0428 CYA_0428 CYA_0428 446370 447848 + high-affinity Na+/H+ antiporter identified by similarity to GB:BAA10332.1%3B match to protein family HMM PF00999 gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0428 CYA_0429 CYA_0429 CYA_0429 447850 448440 - FHA domain protein identified by match to protein family HMM PF00498 gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0429 CYA_0430 CYA_0430 CYA_0430 448546 448764 + conserved hypothetical protein identified by similarity to PIR:S76577 gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0430 CYA_0431 CYA_0431 CYA_0431 448795 449529 + conserved hypothetical protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0431 CYA_0432 CYA_0432 CYA_0432 449651 450451 + hypothetical protein identified by Glimmer2%3B putative gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0432 CYA_0433 CYA_0433 CYA_0433 450616 450858 + hypothetical protein identified by Glimmer2%3B putative gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0433 CYA_0434 CYA_0434 CYA_0434 451199 454399 - transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0434 CYA_0435 CYA_0435 CYA_0435 454467 455750 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0435 CYA_0436 CYA_0436 CYA_0436 455921 457171 - ISSoc6%2C orfB transposase identified by match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0436 CYA_0437 CYA_0437 CYA_0437 457222 457626 + ISSoc6%2C orfA transposase identified by similarity to PIR:AD2227%3B match to protein family HMM PF01797 gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0437 CYA_0438 CYA_0438 CYA_0438 457780 458628 + hypothetical protein identified by Glimmer2%3B putative gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0438 CYA_0439 CYA_0439 CYA_0439 458677 459972 - conserved hypothetical protein gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0439 CYA_0440 CYA_0440 CYA_0440 460003 461085 - conserved hypothetical protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0440 CYA_0441 CYA_0441 CYA_0441 461090 461983 - putative membrane protein identified by match to protein family HMM PF00892 gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0441 CYA_0442 CYA_0442 CYA_0442 461983 462321 - conserved domain protein identified by similarity to GB:CAD14216.1 gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0442 CYA_0443 CYA_0443 CYA_0443 462386 462718 - hypothetical protein identified by Glimmer2%3B putative gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0443 CYA_0444 CYA_0444 CYA_0444 462769 463866 - peptidase%2C M8 (leishmanolysin) family gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0444 CYA_0445 CYA_0445 CYA_0445 464359 464856 - conserved hypothetical protein gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0445 CYA_0446 CYA_0446 CYA_0446 465017 465163 - hypothetical protein identified by Glimmer2%3B putative gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0446 CYA_0447 CYA_0447 CYA_0447 465509 467716 + D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein identified by match to protein family HMM PF02779%3B match to protein family HMM PF03894 gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0447 CYA_0448 CYA_0448 CYA_0448 467763 469085 + CobQ/CobB/MinD/ParA nucleotide binding domain protein identified by match to protein family HMM PF01656 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0448 CYA_0449 CYA_0449 CYA_0449 469078 469722 + conserved hypothetical protein identified by similarity to PIR:S76694 gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0449 CYA_0450 CYA_0450 CYA_0450 469759 470304 - conserved hypothetical protein identified by similarity to PIR:AC1932 gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0450 CYA_0451 CYA_0451 CYA_0451 470364 470435 + tRNA-Met tRNA gene447 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0451 CYA_0452 CYA_0452 CYA_0452 470548 470958 - conserved hypothetical protein identified by match to protein family HMM PF01724 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0452 CYA_0453 CYA_0453 CYA_0453 470890 471030 + conserved domain protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0453 CYA_0454 CYA_0454 CYA_0454 471065 471580 - conserved hypothetical protein TIGR02652 identified by match to protein family HMM TIGR02652 gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0454 CYA_0455 CYA_0455 CYA_0455 471577 471714 - hypothetical protein identified by Glimmer2%3B putative gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0455 CYA_0456 CYA_0456 CYA_0456 471902 472375 + conserved hypothetical protein identified by similarity to SP:Q8YQJ5%3B match to protein family HMM PF02576 gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0456 CYA_0457 CYA_0457 nusA nusA 472535 473902 + transcription termination factor NusA identified by similarity to SP:P32727%3B match to protein family HMM PF00013%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01953 gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0457 CYA_0458 CYA_0458 CYA_0458 473958 474605 + decarboxylase%2C polyprenyl P-hydroxybenzoate/phenylacrylic acid family identified by match to protein family HMM PF02441%3B match to protein family HMM TIGR00421 gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0458 CYA_0459 CYA_0459 CYA_0459 474747 475817 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0459 CYA_0460 CYA_0460 CYA_0460 476202 476321 + hypothetical protein identified by Glimmer2%3B putative gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0460 CYA_0461 CYA_0461 cobH-1 cobH-1 476311 476940 + precorrin-8X methylmutase identified by similarity to GB:CAA04310.1%3B match to protein family HMM PF02570 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0461 CYA_0462 CYA_0462 CYA_0462 476947 477861 + conserved domain protein gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0462 CYA_0463 CYA_0463 cbiE/cbiT cbiE/cbiT 477862 479121 + precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiE/T subunits identified by match to protein family HMM PF00590%3B match to protein family HMM PF02390%3B match to protein family HMM TIGR02467%3B match to protein family HMM TIGR02469 gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0463 CYA_0464 CYA_0464 CYA_0464 479156 479752 - conserved hypothetical protein identified by similarity to PIR:AH1835%3B match to protein family HMM PF01936 gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0464 CYA_0465 CYA_0465 sfsA sfsA 479943 480662 + sugar fermentation stimulation protein identified by match to protein family HMM PF03749%3B match to protein family HMM TIGR00230 gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0465 CYA_0466 CYA_0466 xth xth 480687 481472 + exodeoxyribonuclease III identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0466 CYA_0467 CYA_0467 msrA msrA 481554 482228 + methionine-S-sulfoxide reductase identified by similarity to SP:P27110%3B match to protein family HMM PF01625%3B match to protein family HMM TIGR00401 gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0467 CYA_0468 CYA_0468 cysW cysW 482242 483081 - sulfate ABC transporter%2C permease protein CysW identified by similarity to SP:P27370%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02140 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0468 CYA_0469 CYA_0469 cysT cysT 483071 483883 - sulfate ABC transporter%2C permease protein CysT identified by similarity to SP:P27367%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02139 gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0469 CYA_0470 CYA_0470 cysA cysA 483890 484933 - sulfate transport system ATP-binding protein identified by similarity to SP:P14788%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR00968 gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0470 CYA_0471 CYA_0471 sbp sbp 485108 486127 - sulfate ABC transporter%2C sulfate-binding protein identified by similarity to SP:P06997%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR00971 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0471 CYA_0472 CYA_0472 CYA_0472 486236 489031 - acetyltransferase%2C GNAT family identified by similarity to SP:P76594%3B match to protein family HMM PF00583%3B match to protein family HMM PF02629 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0472 CYA_0473 CYA_0473 adhE adhE 489057 491687 - aldehyde-alcohol dehydrogenase identified by similarity to SP:P17547%3B match to protein family HMM PF00171%3B match to protein family HMM PF00465 gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0473 CYA_0474 CYA_0474 CYA_0474 491778 492188 - OsmC family protein identified by match to protein family HMM PF02566 gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0474 CYA_0475 CYA_0475 pflA pflA 492370 493122 - pyruvate formate-lyase activating enzyme identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR02493 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0475 CYA_0476 CYA_0476 CYA_0476 493284 493661 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0476 CYA_0477 CYA_0477 pflB pflB 493749 496055 - formate acetyltransferase identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01255 gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0477 CYA_0478 CYA_0478 CYA_0478 496453 497505 + putative 4-hydroxyphenylpyruvate dioxygenase identified by match to protein family HMM PF00903 gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0478 CYA_0479 CYA_0479 CYA_0479 497587 497952 - response regulator identified by match to protein family HMM PF00072 gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0479 CYA_0480 CYA_0480 CYA_0480 498264 499196 - NAD-dependent glycerol-3-phosphate dehydrogenase family protein identified by match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF07479 gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0480 CYA_0481 CYA_0481 CYA_0481 499316 500221 + hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0481 CYA_0482 CYA_0482 gcvH gcvH 500300 500689 + glycine cleavage system H protein identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527 gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0482 CYA_0483 CYA_0483 CYA_0483 500693 501478 - GGDEF/FHA domain protein identified by match to protein family HMM PF00498%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0483 CYA_0484 CYA_0484 CYA_0484 501723 502670 - NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0484 CYA_0485 CYA_0485 CYA_0485 502667 504085 - UDP-glucose dehydrogenase identified by similarity to SP:O32271%3B match to protein family HMM PF00984%3B match to protein family HMM PF01210%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0485 CYA_0486 CYA_0486 CYA_0486 504227 505141 + cation transporter%2C cation diffusion facilitator (CDF) family identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0486 CYA_0487 CYA_0487 CYA_0487 505488 505664 + hypothetical protein identified by Glimmer2%3B putative gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0487 CYA_0488 CYA_0488 CYA_0488 505954 506490 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0488 CYA_0489 CYA_0489 CYA_0489 506500 507435 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0489 CYA_0490 CYA_0490 ruvA ruvA 507552 508166 + Holliday junction DNA helicase RuvA identified by match to protein family HMM PF01330%3B match to protein family HMM PF07499%3B match to protein family HMM TIGR00084 gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0490 CYA_0491 CYA_0491 nadD nadD 508163 508786 + nicotinate (nicotinamide) nucleotide adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482 gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0491 CYA_0492 CYA_0492 psaC psaC 508947 509195 - photosystem I iron-sulfur protein PsaC identified by similarity to SP:P18083%3B match to protein family HMM PF00037 gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0492 CYA_0493 CYA_0493 CYA_0493 509434 509811 + hypothetical protein identified by Glimmer2%3B putative gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0493 CYA_0494 CYA_0494 CYA_0494 509831 510205 - conserved hypothetical protein identified by similarity to PIR:AB2257 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0494 CYA_0495 CYA_0495 CYA_0495 510208 510849 - hypothetical protein identified by Glimmer2%3B putative gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0495 CYA_0496 CYA_0496 CYA_0496 510982 512283 - putative gamma-glutamyl phosphate reductase identified by similarity to SP:P07004 gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0496 CYA_0497 CYA_0497 CYA_0497 512401 512853 - conserved hypothetical protein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0497 CYA_0498 CYA_0498 CYA_0498 512911 514188 - putative membrane protein gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0498 CYA_0499 CYA_0499 CYA_0499 514185 515624 - amine oxidase%2C flavin-containing identified by match to protein family HMM PF01593 gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0499 CYA_0500 CYA_0500 CYA_0500 515750 516856 + putative glutamate--cysteine ligase identified by match to protein family HMM PF04107%3B match to protein family HMM TIGR02048 gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0500 CYA_0501 CYA_0501 CYA_0501 517704 518102 + ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM TIGR01766 pseudogene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0501 CYA_0502 CYA_0502 CYA_0502 518175 519785 - transporter%2C monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein identified by match to protein family HMM PF00582%3B match to protein family HMM PF00999 gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0502 CYA_0503 CYA_0503 CYA_0503 520081 520668 - conserved hypothetical protein identified by similarity to GB:BAC91438.1 gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0503 CYA_0504 CYA_0504 hisIE hisIE 520709 521404 - histidine biosynthesis bifunctional protein HisIE identified by similarity to SP:O34912%3B match to protein family HMM PF01502%3B match to protein family HMM PF01503 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0504 CYA_0505 CYA_0505 CYA_0505 521665 523812 - polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0505 CYA_0506 CYA_0506 CYA_0506 524217 524708 - putative phycobilisome linker polypeptide%2C phycocyanin-associated%2C rod identified by match to protein family HMM PF01383 gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0506 CYA_0507 CYA_0507 CYA_0507 524898 525431 + conserved hypothetical protein gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0507 CYA_0509 CYA_0509 CYA_0509 525598 526268 + conserved hypothetical protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error pseudogene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0509 CYA_0510 CYA_0510 CYA_0510 527198 529402 + CobN/magnesium chelatase domain protein identified by match to protein family HMM PF02514 gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0510 CYA_0511 CYA_0511 CYA_0511 529494 529808 - putative RNA-binding protein identified by match to protein family HMM PF00076 gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0511 CYA_0512 CYA_0512 valS valS 530063 532801 - valyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM TIGR00422 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0512 CYA_0513 CYA_0513 CYA_0513 532955 533377 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0513 CYA_0514 CYA_0514 CYA_0514 533412 533570 + putative lipoprotein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0514 CYA_0515 CYA_0515 CYA_0515 533422 533835 + conserved hypothetical protein identified by similarity to GB:BAC09437.1 gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0515 CYA_0516 CYA_0516 cdsA cdsA 533975 534796 - phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0516 CYA_0517 CYA_0517 CYA_0517 534777 534947 - hypothetical protein identified by Glimmer2%3B putative gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0517 CYA_0518 CYA_0518 CYA_0518 534953 535072 + hypothetical protein identified by Glimmer2%3B putative gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0518 CYA_0519 CYA_0519 CYA_0519 535116 536117 + dehydrogenase E1 component%2C alpha subunit identified by match to protein family HMM PF00676 gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0519 CYA_0520 CYA_0520 CYA_0520 536338 537918 + NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 4 family identified by similarity to SP:P32421%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0520 CYA_0521 CYA_0521 CYA_0521 538113 538292 - hypothetical protein identified by Glimmer2%3B putative gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0521 CYA_0522 CYA_0522 CYA_0522 538610 539299 - V4R domain protein identified by match to protein family HMM PF02830 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0522 CYA_0523 CYA_0523 CYA_0523 539316 539795 - putative phycobilisome protein gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0523 CYA_0524 CYA_0524 CYA_0524 539818 540696 - putative phycobilisome protein identified by match to protein family HMM PF00502 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0524 CYA_0525 CYA_0525 bchJ bchJ 540751 541434 - putative bacteriochlorophyll 4-vinyl reductase identified by match to protein family HMM PF02830 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0525 CYA_0526 CYA_0526 CYA_0526 541607 542092 - iron-sulfur cluster-binding protein identified by match to protein family HMM PF00111 gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0526 CYA_0527 CYA_0527 CYA_0527 543064 544068 - taurine uptake ABC transporter (TauT) family%2C substrate-binding protein gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0527 CYA_0528 CYA_0528 CYA_0528 542537 543100 + putative phycobilisome linker polypeptide identified by match to protein family HMM PF00427 gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0528 CYA_0529 CYA_0529 cobA/hemD cobA/hemD 544262 545764 + uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase identified by match to protein family HMM PF00590%3B match to protein family HMM PF02602%3B match to protein family HMM TIGR01469 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0529 CYA_0530 CYA_0530 menB menB 545801 546625 + naphthoate synthase identified by match to protein family HMM PF00378%3B match to protein family HMM TIGR01929 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0530 CYA_0531 CYA_0531 polA polA 546670 549456 + DNA polymerase I identified by match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593 gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0531 CYA_0532 CYA_0532 grxC grxC 549522 549782 + glutaredoxin 3 identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR02181 gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0532 CYA_0533 CYA_0533 CYA_0533 549834 550130 - conserved hypothetical protein identified by similarity to PIR:S75241 gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0533 CYA_0534 CYA_0534 CYA_0534 550279 550806 - methyltransferase%2C UbiE/COQ5 family identified by match to protein family HMM PF01209 gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0534 CYA_0535 CYA_0535 CYA_0535 550816 551700 - arginase family protein identified by match to protein family HMM PF00491 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0535 CYA_0536 CYA_0536 psaD psaD 551962 552357 + photosystem I reaction center subunit II identified by similarity to SP:P20452%3B match to protein family HMM PF02531 gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0536 CYA_0537 CYA_0537 CYA_0537 552727 553335 - antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0537 CYA_0538 CYA_0538 CYA_0538 553397 553501 + hypothetical protein identified by Glimmer2%3B putative gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0538 CYA_0539 CYA_0539 CYA_0539 553498 553734 + hypothetical protein identified by Glimmer2%3B putative gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0539 CYA_0540 CYA_0540 CYA_0540 553736 553993 - conserved hypothetical protein identified by similarity to PIR:AE2344 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0540 CYA_0541 CYA_0541 CYA_0541 553993 554184 + hypothetical protein identified by Glimmer2%3B putative gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0541 CYA_0542 CYA_0542 glpX glpX 554249 555292 + fructose-1%2C6-bisphosphatase%2C class II identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0542 CYA_0543 CYA_0543 hemA hemA 555611 556906 + glutamyl-tRNA reductase identified by match to protein family HMM PF00745%3B match to protein family HMM PF01488%3B match to protein family HMM PF03807%3B match to protein family HMM PF05201%3B match to protein family HMM TIGR01035 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0543 CYA_0544 CYA_0544 CYA_0544 557019 557126 + hypothetical protein identified by Glimmer2%3B putative gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0544 CYA_0545 CYA_0545 typA typA 557310 559127 + GTP-binding protein TypA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394 gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0545 CYA_0546 CYA_0546 CYA_0546 559138 561246 - putative membrane protein gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0546 CYA_0547 CYA_0547 cinA cinA 561284 562600 - competence/damage-inducible protein CinA identified by match to protein family HMM PF00994%3B match to protein family HMM PF02464%3B match to protein family HMM TIGR00199%3B match to protein family HMM TIGR00200 gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0547 CYA_0548 CYA_0548 CYA_0548 562722 563216 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0548 CYA_0549 CYA_0549 CYA_0549 563304 563780 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0549 CYA_0550 CYA_0550 CYA_0550 563736 565036 + ISSoc3%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF01385 pseudogene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0550 CYA_0551 CYA_0551 CYA_0551 565110 565394 - hypothetical protein identified by Glimmer2%3B putative gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0551 CYA_0552 CYA_0552 CYA_0552 566654 567022 - putative lipoprotein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0552 CYA_0553 CYA_0553 CYA_0553 565575 566657 + CobQ/CobB/MinD/ParA nucleotide binding domain protein identified by match to protein family HMM PF01656%3B match to protein family HMM PF01883 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0553 CYA_0554 CYA_0554 CYA_0554 567087 569000 - membrane protein%2C OMP85 family identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0554 CYA_0555 CYA_0555 CYA_0555 569380 569727 - conserved hypothetical protein gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0555 CYA_0556 CYA_0556 cysE cysE 570096 570899 - serine O-acetyltransferase identified by similarity to SP:Q06750%3B match to protein family HMM PF00132%3B match to protein family HMM TIGR01172 gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0556 CYA_0557 CYA_0557 CYA_0557 570008 570109 + hypothetical protein identified by Glimmer2%3B putative gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0557 CYA_0558 CYA_0558 CYA_0558 571083 571424 + glutaredoxin-like protein identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR00365 gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0558 CYA_0559 CYA_0559 bolA bolA 571433 571714 + BolA protein identified by similarity to SP:P15298%3B match to protein family HMM PF01722 gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0559 CYA_0560 CYA_0560 CYA_0560 572078 572428 + putative membrane protein identified by match to protein family HMM PF04020 gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0560 CYA_0561 CYA_0561 topA topA 572482 575142 - DNA topoisomerase I identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0561 CYA_0562 CYA_0562 CYA_0562 575343 575762 + glyoxalase family protein identified by match to protein family HMM PF00903 gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0562 CYA_0563 CYA_0563 dnaX dnaX 575990 578068 - DNA polymerase III%2C subunits gamma and tau identified by match to protein family HMM PF00004%3B match to protein family HMM PF06144%3B match to protein family HMM TIGR02397 gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0563 CYA_0564 CYA_0564 CYA_0564 578157 578693 - hypothetical protein identified by Glimmer2%3B putative gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0564 CYA_0565 CYA_0565 coaE coaE 578722 579414 - dephospho-CoA kinase identified by match to protein family HMM PF01121%3B match to protein family HMM TIGR00152 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0565 CYA_0566 CYA_0566 CYA_0566 579514 581181 - 2-isopropylmalate synthase/homocitrate synthase family protein identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR00977 gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0566 CYA_0567 CYA_0567 CYA_0567 581171 581542 - conserved hypothetical protein identified by similarity to GB:BAD78868.1 gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0567 CYA_0568 CYA_0568 CYA_0568 581831 582655 + PP-loop family protein identified by match to protein family HMM PF00733%3B match to protein family HMM PF01171%3B match to protein family HMM TIGR00268 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0568 CYA_0569 CYA_0569 CYA_0569 582703 584529 + conserved domain protein gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0569 CYA_0570 CYA_0570 CYA_0570 584810 585091 + conserved hypothetical protein identified by similarity to GB:BAC09020.1 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0570 CYA_0571 CYA_0571 CYA_0571 585116 585490 - putative lipoprotein gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0571 CYA_0572 CYA_0572 CYA_0572 585522 586202 - hypothetical protein identified by Glimmer2%3B putative gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0572 CYA_0573 CYA_0573 CYA_0573 586289 586831 - conserved hypothetical protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0573 CYA_0574 CYA_0574 CYA_0574 587313 587771 + S-adenosylmethionine decarboxylase proenzyme identified by match to protein family HMM PF02675 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0574 CYA_0575 CYA_0575 speE speE 587800 588738 + spermidine synthase identified by similarity to SP:P09158%3B match to protein family HMM PF01564%3B match to protein family HMM TIGR00417 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0575 CYA_0576 CYA_0576 CYA_0576 589986 590897 - histone deacetylase family protein identified by match to protein family HMM PF00850 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0576 CYA_0577 CYA_0577 CYA_0577 588838 589989 + putative UDP-sulfoquinovose synthase identified by similarity to SP:O48917%3B match to protein family HMM PF01370 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0577 CYA_0578 CYA_0578 CYA_0578 590947 591267 - conserved hypothetical protein gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0578 CYA_0579 CYA_0579 CYA_0579 591438 591608 - hypothetical protein identified by Glimmer2%3B putative gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0579 CYA_0580 CYA_0580 CYA_0580 591848 592186 - iojap protein identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0580 CYA_0581 CYA_0581 CYA_0581 592232 592873 - HD domain protein identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277%3B match to protein family HMM TIGR00488 gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0581 CYA_0582 CYA_0582 lepA lepA 592866 594677 - GTP-binding protein LepA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393 gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0582 CYA_0583 CYA_0583 CYA_0583 594944 595468 - conserved hypothetical protein identified by similarity to GB:BAC08349.1%3B match to protein family HMM PF01936 gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0583 CYA_0584 CYA_0584 glyQ glyQ 595616 596602 - glycyl-tRNA synthetase%2C alpha subunit identified by match to protein family HMM PF02091%3B match to protein family HMM TIGR00388 gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0584 CYA_0585 CYA_0585 CYA_0585 596648 597418 - peptidase%2C T1( proteasome) family gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0585 CYA_0586 CYA_0586 CYA_0586 597478 598887 - GTP-binding protein domain identified by match to protein family HMM PF01926 gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0586 CYA_0587 CYA_0587 CYA_0587 599119 599403 + conserved hypothetical protein identified by similarity to GB:BAC09322.1%3B match to protein family HMM PF04248 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0587 CYA_0588 CYA_0588 CYA_0588 599457 600041 + WD40-like beta propeller repeat protein identified by match to protein family HMM PF07676 gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0588 CYA_0589 CYA_0589 CYA_0589 600076 601260 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0589 CYA_0590 CYA_0590 CYA_0590 601421 602164 + conserved domain protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0590 CYA_0591 CYA_0591 hisD hisD 602408 603721 + histidinol dehydrogenase identified by match to protein family HMM PF00815%3B match to protein family HMM TIGR00069 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0591 CYA_0592 CYA_0592 CYA_0592 603885 604595 + conserved domain protein gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0592 CYA_0593 CYA_0593 CYA_0593 604692 604997 + conserved hypothetical protein identified by similarity to GB:BAC89079.1 gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0593 CYA_0594 CYA_0594 CYA_0594 605022 606212 + TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0594 CYA_0595 CYA_0595 CYA_0595 606572 607189 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0595 CYA_0596 CYA_0596 CYA_0596 607044 608261 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0596 CYA_0597 CYA_0597 CYA_0597 608382 609281 + RNA polymerase sigma factor%2C group 3 identified by similarity to GB:CAA71068.1%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR01199 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0597 CYA_0598 CYA_0598 CYA_0598 609477 610247 - conserved domain protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0598 CYA_0599 CYA_0599 CYA_0599 610415 610699 - putative transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to GB:BAD41274.1 pseudogene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0599 CYA_0600 CYA_0600 CYA_0600 610837 611103 + hypothetical protein identified by Glimmer2%3B putative gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0600 CYA_0601 CYA_0601 CYA_0601 611112 611853 + urease%2C gamma subunit%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to SP:Q07399%3B match to protein family HMM PF00547%3B match to protein family HMM TIGR00193 pseudogene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0601 CYA_0603 CYA_0603 ureC ureC 611850 613559 + urease%2C alpha subunit identified by similarity to SP:P42885%3B match to protein family HMM PF00449%3B match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR01792 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0603 CYA_0604 CYA_0604 ureE ureE 613567 614016 + urease accessory protein UreE identified by similarity to SP:Q07401%3B match to protein family HMM PF02814%3B match to protein family HMM PF05194 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0604 CYA_0605 CYA_0605 ureF ureF 614023 614676 + urease accessory protein UreF identified by similarity to SP:Q07402%3B match to protein family HMM PF01730 gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0605 CYA_0606 CYA_0606 ureG ureG 614688 615296 + urease accessory protein UreG identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00101 gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0606 CYA_0607 CYA_0607 CYA_0607 615313 616104 + putative urease accessory protein UreD gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0607 CYA_0608 CYA_0608 CYA_0608 616162 616818 - putative transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0608 CYA_0609 CYA_0609 CYA_0609 617290 617655 + conserved hypothetical protein%2C truncation identified by similarity to PIR:AH2183 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0609 CYA_0610 CYA_0610 CYA_0610 618095 619252 + SCP family protein gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0610 CYA_0611 CYA_0611 CYA_0611 619312 619434 - mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0611 CYA_0612 CYA_0612 nirA nirA 619713 621260 + ferredoxin-nitrite reductase identified by similarity to SP:Q51879%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0612 CYA_0613 CYA_0613 nrtA nrtA 621322 622644 + nitrate ABC transporter%2C nitrate-binding protein NrtA identified by similarity to SP:P38043%3B match to protein family HMM TIGR01409 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0613 CYA_0614 CYA_0614 ntrB-1 ntrB-1 622778 623737 + nitrate ABC transporter%2C permease protein NrtB identified by similarity to SP:P38044%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01183 gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0614 CYA_0615 CYA_0615 ntrC-1 ntrC-1 623810 625801 + nitrate ABC transporter%2C ATP-binding protein NtrC identified by similarity to SP:P73450%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01184 gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0615 CYA_0616 CYA_0616 ntrD-1 ntrD-1 625840 626682 + nitrate ABC transporter%2C ATP-binding protein NtrD identified by similarity to SP:P38046%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01184 gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0616 CYA_0617 CYA_0617 CYA_0617 627118 627213 - hypothetical protein identified by Glimmer2%3B putative gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0617 CYA_0618 CYA_0618 CYA_0618 626716 627132 + hypothetical protein identified by Glimmer2%3B putative gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0618 CYA_0619 CYA_0619 narB narB 627358 629493 + nitrate reductase identified by similarity to SP:P73448%3B match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879 gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0619 CYA_0620 CYA_0620 CYA_0620 629981 631174 - ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0620 CYA_0621 CYA_0621 CYA_0621 629518 630009 + conserved hypothetical protein identified by similarity to GB:BAD78799.1%3B match to protein family HMM TIGR02664 gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0621 CYA_0622 CYA_0622 purD purD 631635 632930 - phosphoribosylamine--glycine ligase identified by match to protein family HMM PF01071%3B match to protein family HMM PF02842%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877 gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0622 CYA_0623 CYA_0623 CYA_0623 633056 634186 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0623 CYA_0624 CYA_0624 CYA_0624 634313 635602 - HD domain protein identified by match to protein family HMM PF01966 gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0624 CYA_0625 CYA_0625 CYA_0625 635727 636782 + GDSL-like lipase/acylhydrolase domain protein identified by match to protein family HMM PF00657 gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0625 CYA_0626 CYA_0626 CYA_0626 636800 638650 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521%3B match to protein family HMM TIGR00649 gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0626 CYA_0627 CYA_0627 dapA dapA 638904 639824 - dihydrodipicolinate synthase identified by similarity to SP:Q04796%3B match to protein family HMM PF00701%3B match to protein family HMM TIGR00674 gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0627 CYA_0628 CYA_0628 CYA_0628 640132 640758 + nitroreductase family protein identified by match to protein family HMM PF00881 gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0628 CYA_0629 CYA_0629 CYA_0629 640950 641884 + ISSoc5%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0629 CYA_0630 CYA_0630 trpD trpD 641898 642929 - anthranilate phosphoribosyltransferase identified by similarity to SP:P00904%3B match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM TIGR01245 gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0630 CYA_0631 CYA_0631 CYA_0631 642959 643759 - hypothetical protein identified by Glimmer2%3B putative gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0631 CYA_0632 CYA_0632 purN purN 643786 644448 - phosphoribosylglycinamide formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639 gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0632 CYA_0633 CYA_0633 CYA_0633 645187 645657 + conserved hypothetical protein identified by similarity to PIR:AB2412 gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0633 CYA_0634 CYA_0634 aat aat 645674 646252 + leucyl/phenylalanyl-tRNA--protein transferase identified by similarity to SP:P23885%3B match to protein family HMM PF03588%3B match to protein family HMM TIGR00667 gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0634 CYA_0635 CYA_0635 CYA_0635 646344 646526 + conserved hypothetical protein identified by similarity to GB:BAC09136.1 gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0635 CYA_0636 CYA_0636 CYA_0636 647772 648272 - fasciclin domain protein identified by match to protein family HMM PF02469 gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0636 CYA_0637 CYA_0637 sasA sasA 646673 647806 + adaptive-response sensory histidine kinase SasA identified by similarity to SP:Q06904%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF07689 gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0637 CYA_0638 CYA_0638 CYA_0638 648407 649717 - CO2 hydration protein identified by match to protein family HMM TIGR01964 gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0638 CYA_0639 CYA_0639 CYA_0639 649763 651292 - NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 4 family identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0639 CYA_0640 CYA_0640 CYA_0640 651333 653168 - NAD(P)H dehydrogenase%2C subunit NdhF3 family identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01960 gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0640 CYA_0641 CYA_0641 CYA_0641 653300 653461 - hypothetical protein identified by Glimmer2%3B putative gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0641 CYA_0642 CYA_0642 psbM psbM 653521 653628 - photosystem II reaction center protein PsbM identified by similarity to SP:P72701%3B match to protein family HMM PF05151 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0642 CYA_0643 CYA_0643 CYA_0643 653709 654005 - iron-sulfur cluster-binding protein identified by match to protein family HMM PF00111 gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0643 CYA_0644 CYA_0644 psbB psbB 654368 655900 + photosystem II P680 chlorophyll A apoprotein identified by similarity to SP:P20093%3B match to protein family HMM PF00421 gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0644 CYA_0645 CYA_0645 psbT psbT 656014 656112 + photosystem II reaction center protein PsbT identified by match to protein family HMM PF01405 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0645 CYA_0646 CYA_0646 purQ purQ 656914 657591 - phosphoribosylformylglycinamidine synthase I identified by match to protein family HMM TIGR01737 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0646 CYA_0647 CYA_0647 CYA_0647 656510 656917 + response regulator identified by similarity to PRF:2209375A%3B match to protein family HMM PF00072 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0647 CYA_0648 CYA_0648 purS purS 657644 657901 - phosphoribosylformylglycinamidine synthase%2C PurS protein identified by match to protein family HMM PF02700%3B match to protein family HMM TIGR00302 gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0648 CYA_0649 CYA_0649 CYA_0649 657961 658734 + putative pilus biogenesis protein identified by similarity to GB:AAC36156.1 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0649 CYA_0650 CYA_0650 CYA_0650 659506 659844 - hypothetical protein identified by Glimmer2%3B putative gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0650 CYA_0651 CYA_0651 comB comB 658781 659509 + 2-phosphosulfolactate phosphatase identified by match to protein family HMM PF04029%3B match to protein family HMM TIGR00298 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0651 CYA_0652 CYA_0652 argC argC 659997 661103 + N-acetyl-gamma-glutamyl-phosphate reductase identified by similarity to SP:P23715%3B match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01850 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0652 CYA_0653 CYA_0653 CYA_0653 661037 662572 + hypothetical protein identified by Glimmer2%3B putative gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0653 CYA_0654 CYA_0654 CYA_0654 662803 663885 + putative tocopherol cyclase identified by similarity to SP:Q94FY7 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0654 CYA_0655 CYA_0655 CYA_0655 664036 664109 + tRNA-Arg tRNA gene649 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0655 CYA_0656 CYA_0656 clpC clpC 664229 666703 + Clp protease%2C ATP-binding subunit ClpC identified by similarity to SP:P37571%3B match to protein family HMM PF00004%3B match to protein family HMM PF02151%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724 gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0656 CYA_0657 CYA_0657 CYA_0657 666852 667484 + putative ATP-dependent Clp protease%2C proteolytic subunit ClpP identified by match to protein family HMM PF00574 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0657 CYA_0658 CYA_0658 CYA_0658 667502 668083 + conserved hypothetical protein identified by similarity to PIR:AD2411%3B match to protein family HMM PF05685 gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0658 CYA_0659 CYA_0659 CYA_0659 668111 668722 + putative ATP-dependent Clp protease%2C proteolytic subunit ClpP identified by similarity to SP:P19245%3B match to protein family HMM PF00574 gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0659 CYA_0660 CYA_0660 CYA_0660 668842 669264 + conserved hypothetical protein gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0660 CYA_0661 CYA_0661 CYA_0661 669298 669954 - conserved hypothetical protein identified by match to protein family HMM PF06206 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0661 CYA_0662 CYA_0662 CYA_0662 670060 671454 + malate dehydrogenase (oxaloacetate-decarboxylating) identified by similarity to SP:P16468%3B match to protein family HMM PF00390%3B match to protein family HMM PF01842%3B match to protein family HMM PF03949 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0662 CYA_0663 CYA_0663 CYA_0663 672502 674634 - ICE-like protease (caspase) p20 domain protein identified by match to protein family HMM PF00656%3B match to protein family HMM TIGR01409 gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0663 CYA_0664 CYA_0664 CYA_0664 671834 672505 + putative membrane protein identified by match to protein family HMM PF07758 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0664 CYA_0665 CYA_0665 CYA_0665 675283 676173 - CAAX amino terminal protease family protein identified by match to protein family HMM PF02517 gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0665 CYA_0666 CYA_0666 CYA_0666 676304 677014 - conserved hypothetical protein identified by similarity to GB:BAC90862.1 gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0666 CYA_0667 CYA_0667 CYA_0667 677064 678011 - nucleotidyl transferase family protein identified by match to protein family HMM PF00483 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0667 CYA_0668 CYA_0668 zds zds 678143 679594 - carotene 7%2C8-desaturase identified by similarity to SP:Q9FV46%3B match to protein family HMM PF01266%3B match to protein family HMM PF01593%3B match to protein family HMM TIGR02732 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0668 CYA_0669 CYA_0669 CYA_0669 679605 679709 - hypothetical protein identified by Glimmer2%3B putative gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0669 CYA_0670 CYA_0670 CYA_0670 679734 679805 + tRNA-Gly tRNA gene664 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0670 CYA_0671 CYA_0671 CYA_0671 679854 680588 - D-alanyl-D-alanine carboxypeptidase identified by match to protein family HMM PF02557 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0671 CYA_0672 CYA_0672 CYA_0672 680628 681065 - antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0672 CYA_0673 CYA_0673 CYA_0673 681136 681759 - HD domain protein identified by match to protein family HMM PF01966 gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0673 CYA_0674 CYA_0674 CYA_0674 682527 682688 - gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0674 CYA_0675 CYA_0675 mgtE-1 mgtE-1 683434 684870 + magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0675 CYA_0676 CYA_0676 CYA_0676 684900 685172 + conserved hypothetical protein identified by similarity to PIR:AG2305 gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0676 CYA_0677 CYA_0677 CYA_0677 685207 685908 + mgtC family protein identified by match to protein family HMM PF02308 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0677 CYA_0678 CYA_0678 CYA_0678 686139 686762 - putative membrane protein identified by match to protein family HMM PF01169 gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0678 CYA_0679 CYA_0679 CYA_0679 687174 687296 + conserved hypothetical protein identified by similarity to GB:BAC91764.1 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0679 CYA_0680 CYA_0680 CYA_0680 687319 687720 + conserved hypothetical protein TIGR00252 identified by similarity to SP:Q55761%3B match to protein family HMM PF02021%3B match to protein family HMM TIGR00252 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0680 CYA_0681 CYA_0681 CYA_0681 688253 688795 - conserved hypothetical protein identified by similarity to PIR:AI2373%3B match to protein family HMM PF05991 gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0681 CYA_0682 CYA_0682 CYA_0682 688002 688256 + hypothetical protein identified by Glimmer2%3B putative gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0682 CYA_0683 CYA_0683 CYA_0683 688930 689640 - conserved hypothetical protein identified by similarity to GB:BAC90862.1 gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0683 CYA_0684 CYA_0684 CYA_0684 689690 690649 - nucleotidyl transferase family protein identified by match to protein family HMM PF00483 gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0684 CYA_0685 CYA_0685 CYA_0685 691106 691969 + cystine ABC transporter%2C cystine-binding protein identified by similarity to SP:P39174%3B match to protein family HMM PF00497 gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0685 CYA_0686 CYA_0686 CYA_0686 692083 692787 + cystine ABC transporter%2C permease protein identified by similarity to SP:P42200%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0686 CYA_0687 CYA_0687 CYA_0687 693323 694534 + ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0687 CYA_0688 CYA_0688 CYA_0688 694687 696402 + succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01812 gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0688 CYA_0689 CYA_0689 CYA_0689 696542 697939 + beta-alanine--pyruvate transaminase identified by similarity to SP:P28269%3B match to protein family HMM PF00202 gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0689 CYA_0690 CYA_0690 CYA_0690 698056 699204 - ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0690 CYA_0691 CYA_0691 CYA_0691 699490 699639 - hypothetical protein identified by Glimmer2%3B putative gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0691 CYA_0692 CYA_0692 lipA-1 lipA-1 701015 701869 - lipoic acid synthetase identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00510 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0692 CYA_0693 CYA_0693 CYA_0693 699774 701018 + GTP-binding domain protein identified by match to protein family HMM PF01926 gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0693 CYA_0694 CYA_0694 CYA_0694 702091 702585 - conserved hypothetical protein gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0694 CYA_0695 CYA_0695 CYA_0695 703051 703287 - conserved hypothetical protein identified by similarity to PIR:AF2125 gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0695 CYA_0696 CYA_0696 CYA_0696 703721 704017 + conserved hypothetical protein identified by similarity to GB:BAC91322.1 gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0696 CYA_0697 CYA_0697 CYA_0697 703998 704966 + MazG family protein identified by match to protein family HMM PF03819%3B match to protein family HMM TIGR00444 gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0697 CYA_0698 CYA_0698 CYA_0698 705228 705359 + hypothetical protein identified by Glimmer2%3B putative gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0698 CYA_0699 CYA_0699 CYA_0699 705467 706513 + oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0699 CYA_0700 CYA_0700 CYA_0700 706635 707576 + putative protease identified by match to protein family HMM PF01841 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0700 CYA_0701 CYA_0701 CYA_0701 707669 708175 + hypothetical protein identified by Glimmer2%3B putative gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0701 CYA_0702 CYA_0702 CYA_0702 708185 710911 - polyA polymerase family protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01368%3B match to protein family HMM PF01743%3B match to protein family HMM PF02272 gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0702 CYA_0703 CYA_0703 frr-1 frr-1 711147 711695 - ribosome recycling factor identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496 gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0703 CYA_0704 CYA_0704 CYA_0704 712445 713638 - ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0704 CYA_0705 CYA_0705 CYA_0705 711934 712473 + hypothetical protein identified by Glimmer2%3B putative gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0705 CYA_0706 CYA_0706 CYA_0706 713715 714350 - putative membrane protein identified by match to protein family HMM PF01169 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0706 CYA_0707 CYA_0707 CYA_0707 715289 715768 - conserved hypothetical protein TIGR00250 identified by match to protein family HMM PF03652%3B match to protein family HMM TIGR00250 gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0707 CYA_0708 CYA_0708 CYA_0708 714927 715322 + conserved hypothetical protein TIGR00252 identified by similarity to SP:Q8DI54%3B match to protein family HMM PF02021%3B match to protein family HMM TIGR00252 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0708 CYA_0709 CYA_0709 ahcY ahcY 715879 717159 + adenosylhomocysteinase identified by match to protein family HMM PF00670%3B match to protein family HMM PF02826%3B match to protein family HMM PF05221%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00936 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0709 CYA_0710 CYA_0710 argG argG 717300 718511 - argininosuccinate synthase identified by match to protein family HMM PF00764%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00032 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0710 CYA_0711 CYA_0711 CYA_0711 718783 718953 - hypothetical protein identified by Glimmer2%3B putative gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0711 CYA_0712 CYA_0712 CYA_0712 719078 719575 + conserved hypothetical protein identified by similarity to PIR:AF2149 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0712 CYA_0713 CYA_0713 CYA_0713 720523 721737 - GTP-binding protein domain identified by match to protein family HMM PF01926 gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0713 CYA_0714 CYA_0714 lipA-2 lipA-2 719654 720526 + lipoic acid synthetase identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00510 gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0714 CYA_0715 CYA_0715 CYA_0715 721730 721882 + hypothetical protein identified by Glimmer2%3B putative gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0715 CYA_0716 CYA_0716 CYA_0716 721907 722056 + hypothetical protein identified by Glimmer2%3B putative gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0716 CYA_0717 CYA_0717 CYA_0717 722156 722287 + conserved hypothetical protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0717 CYA_0718 CYA_0718 aroQ aroQ 722265 722768 + 3-dehydroquinate dehydratase identified by match to protein family HMM PF01220%3B match to protein family HMM TIGR01088 gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0718 CYA_0719 CYA_0719 CYA_0719 723012 723548 - thioredoxin identified by match to protein family HMM PF00085 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0719 CYA_0720 CYA_0720 CYA_0720 727212 727643 - conserved hypothetical protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0720 CYA_0721 CYA_0721 CYA_0721 723925 727215 + exonuclease%2C SbcC family identified by similarity to SP:P13458 gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0721 CYA_0722 CYA_0722 CYA_0722 727936 728202 - conserved hypothetical protein identified by similarity to GB:BAC09253.1 gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0722 CYA_0723 CYA_0723 CYA_0723 728199 728519 - conserved hypothetical protein gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0723 CYA_0724 CYA_0724 CYA_0724 728569 730068 - CobN/magnesium chelatase domain protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0724 CYA_0725 CYA_0725 tal tal 730086 731264 - transaldolase identified by match to protein family HMM PF00036%3B match to protein family HMM PF00923%3B match to protein family HMM TIGR00874 gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0725 CYA_0726 CYA_0726 CYA_0726 731379 732659 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0726 CYA_0727 CYA_0727 CYA_0727 732514 733107 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0727 CYA_0728 CYA_0728 cas2-2 cas2-2 733729 734001 - CRISPR-associated protein Cas2 identified by match to protein family HMM TIGR01873 gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0728 CYA_0729 CYA_0729 cas1-1 cas1-1 734001 734948 - CRISPR-associated protein Cas1 identified by match to protein family HMM TIGR00287 gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0729 CYA_0730 CYA_0730 cse3 cse3 734975 735607 - CRISPR-associated protein%2C Cse3 family identified by match to protein family HMM TIGR01907 gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0730 CYA_0731 CYA_0731 cas5e cas5e 735589 736212 - CRISPR-associated protein Cas5%2C Ecoli subtype identified by match to protein family HMM TIGR01868%3B match to protein family HMM TIGR02593 gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0731 CYA_0732 CYA_0732 cse4 cse4 736216 737358 - CRISPR-associated protein%2C Cse4 family identified by match to protein family HMM TIGR01869 gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0732 CYA_0733 CYA_0733 cse2 cse2 737425 738024 - CRISPR-associated protein%2C Cse2 family identified by match to protein family HMM TIGR02548 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0733 CYA_0734 CYA_0734 cse1 cse1 738036 739610 - CRISPR-associated protein%2C Cse1 family identified by match to protein family HMM TIGR02547 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0734 CYA_0735 CYA_0735 cas3 cas3 739627 742308 - CRISPR-associated helicase Cas3 identified by match to protein family HMM PF00271%3B match to protein family HMM TIGR01587 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0735 CYA_0736 CYA_0736 CYA_0736 742311 743219 - conserved hypothetical protein identified by similarity to GB:BAD01867.1 gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0736 CYA_0737 CYA_0737 CYA_0737 743274 743990 + ISSoc8%2C transposase%2C interruption-N gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0737 CYA_0738 CYA_0738 CYA_0738 745048 745221 - hypothetical protein identified by Glimmer2%3B putative gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0738 CYA_0739 CYA_0739 CYA_0739 744741 745103 + ISSoc8%2C transposase%2C interruption-C identified by match to protein family HMM PF07282 gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0739 CYA_0740 CYA_0740 CYA_0740 745386 746318 - pseudouridine synthase%2C RluA family identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0740 CYA_0741 CYA_0741 ppsA ppsA 746652 749111 + phosphoenolpyruvate synthase identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01418 gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0741 CYA_0742 CYA_0742 CYA_0742 749181 750440 + putative 2-oxo acid dehydrogenase%2C acyltransferase identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0742 CYA_0743 CYA_0743 CYA_0743 750971 752635 + putative lipoprotein gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0743 CYA_0744 CYA_0744 CYA_0744 752909 753541 - NADH-ubiquinone/plastoquinone oxidoreductase%2C I subunit identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00403%3B match to protein family HMM TIGR01971 gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0744 CYA_0745 CYA_0745 CYA_0745 753577 754698 - NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 1 family identified by similarity to SP:P26522%3B match to protein family HMM PF00146 gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0745 CYA_0746 CYA_0746 CYA_0746 754760 754963 - hypothetical protein identified by Glimmer2%3B putative gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0746 CYA_0747 CYA_0747 CYA_0747 754994 756178 - NADH-ubiquinone/plastoquinone oxidoreductase%2C H subunit identified by similarity to SP:P27724%3B match to protein family HMM PF00346%3B match to protein family HMM TIGR01962 gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0747 CYA_0748 CYA_0748 CYA_0748 756346 756663 + conserved hypothetical protein gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0748 CYA_0749 CYA_0749 CYA_0749 756755 757312 - carboxymuconolactone decarboxylase family protein identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0749 CYA_0750 CYA_0750 CYA_0750 757386 757637 - hypothetical protein identified by Glimmer2%3B putative gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0750 CYA_0751 CYA_0751 CYA_0751 757709 758351 + urease accessory protein ureG%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0751 CYA_0753 CYA_0753 ureD ureD 758348 759151 + urease accessory protein UreD identified by similarity to SP:Q09063%3B match to protein family HMM PF01774 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0753 CYA_0754 CYA_0754 CYA_0754 759189 760703 + conserved hypothetical protein gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0754 CYA_0755 CYA_0755 CYA_0755 760753 760832 + tRNA-Leu tRNA gene748 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0755 CYA_0756 CYA_0756 CYA_0756 760890 762491 - dolichyl-phosphate-mannose-protein mannosyltransferase identified by match to protein family HMM PF02366 gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0756 CYA_0757 CYA_0757 CYA_0757 762688 763470 - conserved domain protein gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0757 CYA_0758 CYA_0758 CYA_0758 763464 764027 - hypothetical protein identified by Glimmer2%3B putative gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0758 CYA_0759 CYA_0759 ftsY ftsY 764247 765707 - signal recognition particle-docking protein FtsY identified by similarity to SP:P51835%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064 gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0759 CYA_0760 CYA_0760 purU purU 765802 766650 - formyltetrahydrofolate deformylase identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00655 gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0760 CYA_0761 CYA_0761 tatA-1 tatA-1 766952 767290 - twin-arginine translocation protein TatA identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0761 CYA_0762 CYA_0762 secA secA 767499 770363 + preprotein translocase%2C SecA subunit identified by match to protein family HMM PF01043%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963 gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0762 CYA_0763 CYA_0763 CYA_0763 770446 771204 - pspA/IM30 family protein identified by match to protein family HMM PF04012 gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0763 CYA_0764 CYA_0764 CYA_0764 771239 771949 - putative polysaccharide deacetylase identified by match to protein family HMM PF01522 gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0764 CYA_0765 CYA_0765 CYA_0765 771959 774466 - peptidase%2C U32 family identified by match to protein family HMM PF01136 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0765 CYA_0766 CYA_0766 CYA_0766 774623 774748 - hypothetical protein identified by Glimmer2%3B putative gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0766 CYA_0767 CYA_0767 CYA_0767 774780 775973 - ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0767 CYA_0768 CYA_0768 sixA sixA 776204 776698 - phosphohistidine phosphatase SixA identified by match to protein family HMM PF00300%3B match to protein family HMM TIGR00249 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0768 CYA_0769 CYA_0769 trx-1 trx-1 776958 777299 + thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0769 CYA_0770 CYA_0770 CYA_0770 777430 778500 + conserved hypothetical protein TIGR00730 identified by match to protein family HMM PF03641%3B match to protein family HMM TIGR00730 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0770 CYA_0771 CYA_0771 trpF trpF 778523 779203 + N-(5'phosphoribosyl)anthranilate isomerase identified by similarity to SP:Q56320%3B match to protein family HMM PF00697 gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0771 CYA_0772 CYA_0772 CYA_0772 779226 780056 - conserved hypothetical protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0772 CYA_0773 CYA_0773 CYA_0773 780166 780984 - RNA pseudouridine synthase family protein identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0773 CYA_0774 CYA_0774 CYA_0774 781029 781538 - conserved hypothetical protein identified by similarity to GB:BAC92337.1 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0774 CYA_0775 CYA_0775 CYA_0775 781527 781706 + hypothetical protein identified by Glimmer2%3B putative gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0775 CYA_0776 CYA_0776 rbfA rbfA 781898 782347 - ribosome-binding factor A identified by similarity to SP:P32731%3B match to protein family HMM PF02033%3B match to protein family HMM TIGR00082 gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0776 CYA_0777 CYA_0777 CYA_0777 782541 783770 - ISSoc5%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0777 CYA_0778 CYA_0778 CYA_0778 783953 784174 + conserved hypothetical protein identified by similarity to GB:BAC91135.1 gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0778 CYA_0779 CYA_0779 CYA_0779 784113 784265 + hypothetical protein identified by Glimmer2%3B putative gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0779 CYA_0780 CYA_0780 phrB-2 phrB-2 784262 785701 + deoxyribodipyrimidine photolyase identified by similarity to SP:P05327%3B match to protein family HMM PF00875%3B match to protein family HMM PF03441 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0780 CYA_0781 CYA_0781 CYA_0781 785884 787233 - alkaline phosphatase identified by match to protein family HMM PF00245 gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0781 CYA_0782 CYA_0782 CYA_0782 787481 789847 - putative membrane-bound protease identified by match to protein family HMM PF01841 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0782 CYA_0783 CYA_0783 CYA_0783 789979 790077 - hypothetical protein identified by Glimmer2%3B putative gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0783 CYA_0784 CYA_0784 uvrA uvrA 790054 792954 + excinuclease ABC%2C A subunit identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0784 CYA_0785 CYA_0785 CYA_0785 793050 794243 - putative oxygen-independent coproporphyrinogen III oxidase identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539 gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0785 CYA_0786 CYA_0786 CYA_0786 794301 795232 - ISSoc5%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0786 CYA_0787 CYA_0787 dnaK-2 dnaK-2 795580 797388 + chaperone protein DnaK identified by similarity to GB:BAA35087.1%3B match to protein family HMM PF00012%3B match to protein family HMM TIGR02350 gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0787 CYA_0788 CYA_0788 dnaJ dnaJ 797505 798689 + chaperone protein DnaJ identified by match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349 gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0788 CYA_0789 CYA_0789 CYA_0789 798686 798949 + conserved hypothetical protein identified by similarity to GB:BAC08540.1 gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0789 CYA_0790 CYA_0790 rsgA rsgA 798946 800037 + ribosome small subunit-dependent GTPase A identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0790 CYA_0791 CYA_0791 CYA_0791 800172 801692 + hypothetical protein identified by Glimmer2%3B putative gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0791 CYA_0792 CYA_0792 CYA_0792 801679 801798 + hypothetical protein identified by Glimmer2%3B putative gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0792 CYA_0793 CYA_0793 CYA_0793 802085 803077 + pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0793 CYA_0794 CYA_0794 CYA_0794 803159 804700 + sensor histidine kinase identified by match to protein family HMM PF00512 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0794 CYA_0795 CYA_0795 CYA_0795 804796 805575 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0795 CYA_0796 CYA_0796 CYA_0796 805640 806377 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0796 CYA_0797 CYA_0797 CYA_0797 806399 808078 - conserved hypothetical protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0797 CYA_0798 CYA_0798 rnhA rnhA 808142 808642 - ribonuclease H identified by match to protein family HMM PF00075 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0798 CYA_0799 CYA_0799 CYA_0799 809059 810159 - DRTGG domain protein identified by match to protein family HMM PF07085 gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0799 CYA_0800 CYA_0800 CYA_0800 810358 811815 - K+ transporter%2C Trk family identified by similarity to GB:BAA32063.1%3B match to protein family HMM PF02386 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0800 CYA_0801 CYA_0801 CYA_0801 811827 812486 - K+ transporter%2C Trk family identified by match to protein family HMM PF01210%3B match to protein family HMM PF02080%3B match to protein family HMM PF02254%3B match to protein family HMM PF03446 gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0801 CYA_0802 CYA_0802 clpX clpX 812563 813909 - ATP-dependent Clp protease%2C ATP-binding subunit ClpX identified by similarity to SP:P50866%3B match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0802 CYA_0803 CYA_0803 ligA ligA 814452 816473 - DNA ligase%2C NAD-dependent identified by match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575 gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0803 CYA_0804 CYA_0804 rnc rnc 816711 817436 - ribonuclease III identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191 gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0804 CYA_0805 CYA_0805 CYA_0805 817528 817860 + conserved hypothetical protein identified by similarity to PIR:AD1913 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0805 CYA_0806 CYA_0806 CYA_0806 817918 818223 - hypothetical protein identified by Glimmer2%3B putative gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0806 CYA_0807 CYA_0807 CYA_0807 818226 819443 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0807 CYA_0808 CYA_0808 CYA_0808 819298 819891 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0808 CYA_0809 CYA_0809 mutY mutY 820043 821119 - A/G-specific adenine glycosylase identified by match to protein family HMM PF00293%3B match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR00586%3B match to protein family HMM TIGR01084 gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0809 CYA_0810 CYA_0810 CYA_0810 821705 822037 - hypothetical protein identified by Glimmer2%3B putative gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0810 CYA_0811 CYA_0811 CYA_0811 822469 823629 + carboxylesterase%2C beta-lactamase family identified by match to protein family HMM PF00144 gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0811 CYA_0812 CYA_0812 CYA_0812 823732 824013 + S4 domain protein identified by match to protein family HMM PF01479 gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0812 CYA_0813 CYA_0813 CYA_0813 824515 825198 + putative membrane proteinprotein identified by similarity to PIR:AH1843 gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0813 CYA_0814 CYA_0814 CYA_0814 825281 825838 + conserved domain protein gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0814 CYA_0815 CYA_0815 aspC aspC 825882 827066 + aspartate aminotransferase identified by similarity to SP:Q56232%3B match to protein family HMM PF00155 gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0815 CYA_0816 CYA_0816 CYA_0816 827229 827486 + hypothetical protein identified by Glimmer2%3B putative gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0816 CYA_0817 CYA_0817 prfC prfC 827792 829435 + peptide chain release factor 3%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00009%3B match to protein family HMM TIGR00503 pseudogene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0817 CYA_0818 CYA_0818 cefD cefD 829654 830793 + isopenicillin N-epimerase identified by similarity to SP:Q03046%3B match to protein family HMM PF00266 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0818 CYA_0819 CYA_0819 CYA_0819 830790 830894 + hypothetical protein identified by Glimmer2%3B putative gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0819 CYA_0820 CYA_0820 CYA_0820 830936 833575 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0820 CYA_0821 CYA_0821 CYA_0821 834601 836736 + ribonuclease%2C Rne/Rng family identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0821 CYA_0822 CYA_0822 rnhB rnhB 836795 837460 + ribonuclease HII identified by similarity to SP:O31744%3B match to protein family HMM PF01351 gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0822 CYA_0823 CYA_0823 CYA_0823 837478 837551 + tRNA-Arg tRNA gene816 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0823 CYA_0824 CYA_0824 CYA_0824 837615 838040 - conserved hypothetical protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0824 CYA_0825 CYA_0825 gvpJ gvpJ 838116 838448 - gas vesicle protein J identified by similarity to SP:O68669%3B match to protein family HMM PF00741 gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0825 CYA_0826 CYA_0826 gvpN gvpN 838488 839372 - gas vesicle protein GvpN identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02640 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0826 CYA_0827 CYA_0827 gvpC gvpC 839461 840459 - gas vesicle structural protein GvpC identified by match to protein family HMM TIGR02641 gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0827 CYA_0828 CYA_0828 CYA_0828 840868 841071 - hypothetical protein identified by Glimmer2%3B putative gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0828 CYA_0829 CYA_0829 gvpA gvpA 841132 841350 - gas vesicle protein A identified by similarity to GB:CAE11900.1%3B match to protein family HMM PF00741 gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0829 CYA_0830 CYA_0830 CYA_0830 841733 841951 + conserved hypothetical protein gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0830 CYA_0831 CYA_0831 CYA_0831 842103 842786 + V4R domain protein identified by match to protein family HMM PF02830 gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0831 CYA_0832 CYA_0832 CYA_0832 842783 843034 + conserved domain protein gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0832 CYA_0833 CYA_0833 CYA_0833 843080 843559 + conserved hypothetical protein identified by similarity to GB:BAC09852.1 gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0833 CYA_0834 CYA_0834 CYA_0834 843616 844305 + V4R domain protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0834 CYA_0835 CYA_0835 CYA_0835 844768 845169 - conserved domain protein gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0835 CYA_0836 CYA_0836 aroH aroH 844397 844771 + chorismate mutase identified by similarity to SP:P19080%3B match to protein family HMM PF07736%3B match to protein family HMM TIGR01796 gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0836 CYA_0837 CYA_0837 CYA_0837 845336 846118 + conserved hypothetical protein identified by similarity to SP:Q55823 gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0837 CYA_0838 CYA_0838 ppc ppc 846251 849187 - phosphoenolpyruvate carboxylase identified by match to protein family HMM PF00311 gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0838 CYA_0839 CYA_0839 CYA_0839 849310 849567 - conserved hypothetical protein identified by similarity to GB:BAD79475.1 gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0839 CYA_0840 CYA_0840 CYA_0840 851354 851761 - sensor histidine kinase identified by match to protein family HMM PF02518 gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0840 CYA_0841 CYA_0841 CYA_0841 850888 851364 + conserved hypothetical protein gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0841 CYA_0842 CYA_0842 CYA_0842 851871 852020 + hypothetical protein identified by Glimmer2%3B putative gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0842 CYA_0843 CYA_0843 CYA_0843 852141 852719 + conserved hypothetical protein identified by similarity to PIR:S76054 gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0843 CYA_0844 CYA_0844 map-1 map-1 852908 853696 + methionine aminopeptidase%2C type I identified by similarity to SP:P07906%3B match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0844 CYA_0845 CYA_0845 CYA_0845 853703 855547 + chloride transporter%2C chloride channel (ClC) family identified by match to protein family HMM PF00571%3B match to protein family HMM PF00654 gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0845 CYA_0846 CYA_0846 CYA_0846 855551 856219 - base excision DNA repair protein%2C HhH-GPD family identified by match to protein family HMM PF00730 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0846 CYA_0847 CYA_0847 murG murG 856359 857447 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase identified by similarity to SP:P17443%3B match to protein family HMM PF03033%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01133 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0847 CYA_0848 CYA_0848 CYA_0848 857455 858429 - BNR/Asp-box repeat protein identified by match to protein family HMM PF02012 gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0848 CYA_0849 CYA_0849 CYA_0849 858459 858764 - rubredoxin identified by match to protein family HMM PF00301 gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0849 CYA_0850 CYA_0850 CYA_0850 859234 859644 + FHA domain protein identified by match to protein family HMM PF00498 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0850 CYA_0851 CYA_0851 CYA_0851 860073 860210 + hypothetical protein identified by Glimmer2%3B putative gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0851 CYA_0852 CYA_0852 accC accC 860606 861961 + acetyl-CoA carboxylase%2C biotin carboxylase identified by match to protein family HMM PF00289%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM TIGR00514 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0852 CYA_0853 CYA_0853 CYA_0853 862122 863051 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0853 CYA_0854 CYA_0854 CYA_0854 863105 863200 - hypothetical protein identified by Glimmer2%3B putative gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0854 CYA_0855 CYA_0855 CYA_0855 863215 864228 - hypothetical protein identified by Glimmer2%3B putative gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0855 CYA_0856 CYA_0856 CYA_0856 864219 864821 - DnaJ domain protein identified by match to protein family HMM PF00226 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0856 CYA_0857 CYA_0857 CYA_0857 865147 865431 - hypothetical protein identified by Glimmer2%3B putative gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0857 CYA_0858 CYA_0858 CYA_0858 865478 866230 - conserved hypothetical protein identified by similarity to PIR:S75174%3B match to protein family HMM PF04481 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0858 CYA_0859 CYA_0859 speB speB 866403 867308 + agmatinase identified by similarity to SP:P70999%3B match to protein family HMM PF00491%3B match to protein family HMM TIGR01230 gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0859 CYA_0860 CYA_0860 CYA_0860 867735 868409 + conserved hypothetical protein TIGR00044 identified by similarity to GB:AAO80804.1%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00044 gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0860 CYA_0861 CYA_0861 CYA_0861 868983 869552 + conserved hypothetical protein identified by similarity to PIR:AF1867%3B match to protein family HMM PF04472 gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0861 CYA_0862 CYA_0862 CYA_0862 870347 871561 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0862 CYA_0863 CYA_0863 proC proC 869558 870361 + pyrroline-5-carboxylate reductase identified by match to protein family HMM PF01210%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112 gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0863 CYA_0864 CYA_0864 CYA_0864 871611 872861 - transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0864 CYA_0865 CYA_0865 CYA_0865 872893 872991 - hypothetical protein identified by Glimmer2%3B putative gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0865 CYA_0866 CYA_0866 CYA_0866 872992 873099 - hypothetical protein identified by Glimmer2%3B putative gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0866 CYA_0867 CYA_0867 CYA_0867 873307 873600 - conserved hypothetical protein identified by similarity to GB:BAC10003.1 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0867 CYA_0868 CYA_0868 CYA_0868 873814 874056 + conserved hypothetical protein identified by similarity to PIR:AB2198 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0868 CYA_0869 CYA_0869 hemF hemF 874178 875191 + coproporphyrinogen III oxidase%2C aerobic identified by match to protein family HMM PF01218 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0869 CYA_0870 CYA_0870 CYA_0870 875223 875918 + phospholipase/carboxylesterase family protein identified by similarity to SP:Q53547%3B match to protein family HMM PF02230 gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0870 CYA_0871 CYA_0871 CYA_0871 877467 878363 - putative CRISPR-associated protein%2C APE2256 family identified by match to protein family HMM TIGR02619 gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0871 CYA_0872 CYA_0872 CYA_0872 875992 877470 + conserved hypothetical protein identified by similarity to GB:BAD78368.1 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0872 CYA_0873 CYA_0873 CYA_0873 878417 879133 - conserved domain protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0873 CYA_0874 CYA_0874 CYA_0874 879144 880196 - putative CRISPR-associated RAMP protein identified by similarity to PIR:AC1990%3B match to protein family HMM PF03787%3B match to protein family HMM TIGR02581 gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0874 CYA_0875 CYA_0875 CYA_0875 880193 880651 - conserved hypothetical protein identified by similarity to PIR:AD1990 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0875 CYA_0876 CYA_0876 CYA_0876 880648 881622 - CRISPR-associated RAMP protein identified by match to protein family HMM PF03787 gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0876 CYA_0877 CYA_0877 CYA_0877 881677 882519 - CRISPR-associated RAMP protein%2C SSO1426 family identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR02581 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0877 CYA_0878 CYA_0878 CYA_0878 882527 882664 - hypothetical protein identified by Glimmer2%3B putative gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0878 CYA_0879 CYA_0879 CYA_0879 882668 883114 - conserved hypothetical protein gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0879 CYA_0880 CYA_0880 csx10 csx10 883111 884334 - CRISPR-associated RAMP protein%2C Csx10 family identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR02674 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0880 CYA_0881 CYA_0881 CYA_0881 884334 885047 - CRISPR-associated RAMP protein identified by match to protein family HMM PF03787 gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0881 CYA_0882 CYA_0882 crm2-1 crm2-1 885047 887242 - CRISPR-associated protein%2C Crm2 family identified by match to protein family HMM TIGR01872%3B match to protein family HMM TIGR02577 gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0882 CYA_0883 CYA_0883 cas6 cas6 887772 888923 + CRISPR-associated protein Cas6 identified by match to protein family HMM TIGR01877 gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0883 CYA_0884 CYA_0884 CYA_0884 888957 889079 - mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0884 CYA_0885 CYA_0885 cas2-3 cas2-3 892609 892887 - CRISPR-associated protein Cas2 identified by match to protein family HMM TIGR01573 gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0885 CYA_0886 CYA_0886 CYA_0886 892887 893360 - CRISPR-associated protein Cas1%2C interruption-C%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to PIR:AD1854 pseudogene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0886 CYA_0887 CYA_0887 CYA_0887 893440 894633 + ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0887 CYA_0888 CYA_0888 CYA_0888 894635 894885 - CRISPR-associated protein Cas1%2C interruption-N%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to GB:BAD01973.1 pseudogene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0888 CYA_0889 CYA_0889 CYA_0889 894897 895712 - conserved hypothetical protein identified by similarity to GB:BAD01980.1 gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0889 CYA_0890 CYA_0890 csx3 csx3 896418 897338 + CRISPR-associated protein%2C Csx3 family identified by match to protein family HMM TIGR02579 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0890 CYA_0891 CYA_0891 ntrD-2 ntrD-2 897554 898417 - nitrate ABC transporter%2C ATP-binding protein NtrD identified by similarity to SP:P38045%3B similarity to SP:P38046%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01184 gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0891 CYA_0892 CYA_0892 ntrC-2 ntrC-2 898480 900489 - nitrate ABC transporter%2C ATP-binding protein NtrC identified by similarity to SP:P38045%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01184 gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0892 CYA_0893 CYA_0893 ntrB-2 ntrB-2 900649 901476 - nitrate ABC transporter%2C permease protein identified by similarity to GB:AAB86903.1%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01183 gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0893 CYA_0894 CYA_0894 CYA_0894 902016 903320 - nitrate/nitrite/cyanate ABC transporter (NitT) family%2C substrate-binding protein identified by similarity to SP:P39660%3B similarity to GB:AAQ23048.1%3B match to protein family HMM TIGR01409 gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0894 CYA_0895 CYA_0895 chlB chlB 904453 905985 - light-independent protochlorophyllide reductase%2C B subunit identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01278 gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0895 CYA_0896 CYA_0896 CYA_0896 903531 904487 + putative tocopherol cyclase gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0896 CYA_0897 CYA_0897 CYA_0897 906359 906496 + hypothetical protein identified by Glimmer2%3B putative gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0897 CYA_0898 CYA_0898 CYA_0898 906579 906881 + mo-dependent nitrogenase family protein identified by match to protein family HMM PF06967 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0898 CYA_0899 CYA_0899 CYA_0899 907420 907773 - conserved hypothetical protein identified by similarity to PIR:S75476%3B match to protein family HMM PF01934 gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0899 CYA_0900 CYA_0900 CYA_0900 907763 908056 - nucleotidyltransferase domain protein identified by match to protein family HMM PF01909 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0900 CYA_0901 CYA_0901 CYA_0901 908362 913500 - conserved hypothetical protein identified by similarity to PIR:AE1864%3B match to protein family HMM PF04357 gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0901 CYA_0902 CYA_0902 CYA_0902 913576 913902 + anti-anti-sigma factor family protein identified by match to protein family HMM PF01740 gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0902 CYA_0903 CYA_0903 cobI cobI 913923 914639 + precorrin-2 C20-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01467 gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0903 CYA_0904 CYA_0904 CYA_0904 915448 915594 + hypothetical protein identified by Glimmer2%3B putative gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0904 CYA_0905 CYA_0905 CYA_0905 915781 916449 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0905 CYA_0906 CYA_0906 CYA_0906 917057 917242 - conserved hypothetical protein identified by similarity to PIR:AD2255 gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0906 CYA_0907 CYA_0907 CYA_0907 916527 917060 + antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0907 CYA_0908 CYA_0908 pcm pcm 917990 918616 - protein-L-isoaspartate(D-aspartate) O-methyltransferase identified by similarity to SP:P24206%3B match to protein family HMM PF01135%3B match to protein family HMM TIGR00080 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0908 CYA_0909 CYA_0909 CYA_0909 917241 917993 + glycerophosphoryl diester phosphodiesterase family protein identified by match to protein family HMM PF03009 gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0909 CYA_0910 CYA_0910 CYA_0910 918955 920313 - conserved hypothetical protein identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01826 gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0910 CYA_0911 CYA_0911 CYA_0911 920306 921313 - putative ATP-binding protein identified by match to protein family HMM PF03668 gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0911 CYA_0912 CYA_0912 nth nth 921363 922058 - endonuclease III identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083 gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0912 CYA_0913 CYA_0913 CYA_0913 922065 923165 - putative membrane-associated zinc metalloprotease identified by match to protein family HMM PF00595%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054 gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0913 CYA_0914 CYA_0914 CYA_0914 923278 923520 - NifU domain protein identified by match to protein family HMM PF01106 gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0914 CYA_0915 CYA_0915 CYA_0915 923754 924848 + PIN/TRAM domain protein identified by match to protein family HMM PF01850%3B match to protein family HMM PF01938 gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0915 CYA_0916 CYA_0916 CYA_0916 924902 926623 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518 gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0916 CYA_0917 CYA_0917 ksgA ksgA 926631 927470 + dimethyladenosine transferase identified by match to protein family HMM PF00398%3B match to protein family HMM TIGR00755 gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0917 CYA_0918 CYA_0918 CYA_0918 927519 928223 + oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0918 CYA_0919 CYA_0919 sppA-1 sppA-1 928298 929104 + signal peptide peptidase SppA%2C 36K type identified by match to protein family HMM PF01343%3B match to protein family HMM TIGR00706 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0919 CYA_0920 CYA_0920 CYA_0920 929252 930337 - conserved hypothetical protein identified by similarity to PIR:AB2462 gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0920 CYA_0921 CYA_0921 CYA_0921 931016 931129 - hypothetical protein identified by Glimmer2%3B putative gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0921 CYA_0922 CYA_0922 CYA_0922 931131 931571 - conserved hypothetical protein identified by similarity to GB:BAC07718.1 gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0922 CYA_0923 CYA_0923 CYA_0923 932014 933912 + transporter%2C monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254 gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0923 CYA_0924 CYA_0924 CYA_0924 933940 935304 - FG-GAP repeat/ASPIC/UnbV domain protein identified by match to protein family HMM PF01839%3B match to protein family HMM PF07593 gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0924 CYA_0925 CYA_0925 rpsT rpsT 935393 935695 + ribosomal protein S20 identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029 gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0925 CYA_0926 CYA_0926 CYA_0926 936772 937035 + ParB nuclease domain protein identified by match to protein family HMM PF02195 gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0926 CYA_0927 CYA_0927 CYA_0927 937057 937728 - DNA-binding response regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0927 CYA_0928 CYA_0928 CYA_0928 937912 938700 - putative membrane protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0928 CYA_0929 CYA_0929 cobA cobA 938697 939455 - uroporphyrin-III C-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0929 CYA_0930 CYA_0930 CYA_0930 939523 940422 - CbiX family protein identified by similarity to SP:O87690%3B match to protein family HMM PF01903 gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0930 CYA_0931 CYA_0931 CYA_0931 940421 941374 + L-asparaginase%2C thermolabile identified by match to protein family HMM PF06089 gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0931 CYA_0932 CYA_0932 CYA_0932 941582 942214 + hypothetical protein identified by Glimmer2%3B putative gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0932 CYA_0933 CYA_0933 CYA_0933 943317 944390 + hypothetical protein identified by Glimmer2%3B putative gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0933 CYA_0934 CYA_0934 CYA_0934 944702 945376 - conserved hypothetical protein identified by similarity to PIR:AI2367 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0934 CYA_0935 CYA_0935 CYA_0935 945552 946043 - conserved hypothetical protein identified by match to protein family HMM PF04461 gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0935 CYA_0936 CYA_0936 CYA_0936 946162 947004 + oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0936 CYA_0937 CYA_0937 CYA_0937 947476 948816 - polysaccharide biosynthesis domain protein identified by match to protein family HMM PF01943 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0937 CYA_0938 CYA_0938 CYA_0938 947117 947479 + FHA domain protein identified by match to protein family HMM PF00498 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0938 CYA_0939 CYA_0939 CYA_0939 948786 950765 + penicillin-binding protein identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0939 CYA_0940 CYA_0940 hup-2 hup-2 951098 951415 + DNA-binding protein HU identified by similarity to SP:P05514%3B match to protein family HMM PF00216 gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0940 CYA_0941 CYA_0941 cobD-2 cobD-2 951486 952631 + L-threonine-O-3-phosphate decarboxylase identified by similarity to GB:AAC79515.1%3B match to protein family HMM PF00155%3B match to protein family HMM TIGR01140 gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0941 CYA_0942 CYA_0942 CYA_0942 952658 953323 + conserved hypothetical protein identified by similarity to PIR:AH2253 gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0942 CYA_0943 CYA_0943 CYA_0943 953467 954468 + hypothetical protein identified by Glimmer2%3B putative gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0943 CYA_0944 CYA_0944 CYA_0944 954669 955745 - putative secreted protein identified by match to protein family HMM TIGR01409 gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0944 CYA_0945 CYA_0945 nadC nadC 955764 956606 + nicotinate-nucleotide pyrophosphorylase identified by match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0945 CYA_0946 CYA_0946 nadA nadA 956763 957695 + quinolinate synthetase complex%2C A subunit identified by match to protein family HMM PF02445%3B match to protein family HMM TIGR00550 gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0946 CYA_0947 CYA_0947 gnd gnd 959250 960659 - 6-phosphogluconate dehydrogenase%2C decarboxylating identified by match to protein family HMM PF00393%3B match to protein family HMM PF03446%3B match to protein family HMM TIGR00873 gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0947 CYA_0948 CYA_0948 nadB nadB 957733 959253 + L-aspartate oxidase identified by similarity to SP:P10902%3B match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00551 gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0948 CYA_0949 CYA_0949 CYA_0949 960752 961249 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0949 CYA_0950 CYA_0950 CYA_0950 961326 962519 + conserved hypothetical protein TIGR00299 identified by match to protein family HMM PF01969%3B match to protein family HMM TIGR00299 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0950 CYA_0951 CYA_0951 CYA_0951 962731 964725 + peroxisomal fatty acyl CoA ABC transporter (P-FAT) family%2C transmembrane ATP-binding protein identified by match to protein family HMM PF00005 gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0951 CYA_0952 CYA_0952 sir sir 964842 966620 + sulfite reductase%2C ferredoxin dependent identified by similarity to SP:P30008%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02042 gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0952 CYA_0953 CYA_0953 CYA_0953 966736 967527 + TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07721 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0953 CYA_0954 CYA_0954 CYA_0954 967595 967939 - anti-anti-sigma factor family protein identified by match to protein family HMM PF01740 gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0954 CYA_0955 CYA_0955 CYA_0955 968098 969234 + glycosyl transferase%2C group 2 identified by match to protein family HMM PF00535 gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0955 CYA_0956 CYA_0956 CYA_0956 969244 970194 - D12 class N6 adenine-specific DNA methyltransferase identified by match to protein family HMM PF02086%3B match to protein family HMM TIGR00571 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0956 CYA_0957 CYA_0957 CYA_0957 970268 970444 - hypothetical protein identified by Glimmer2%3B putative gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0957 CYA_0958 CYA_0958 CYA_0958 970713 970877 - hypothetical protein identified by Glimmer2%3B putative gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0958 CYA_0959 CYA_0959 CYA_0959 971755 972450 + glutamine amidotransferase%2C class I identified by match to protein family HMM PF00117 gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0959 CYA_0960 CYA_0960 murD murD 972527 973936 + UDP-N-acetylmuramoylalanine--D-glutamate ligase identified by match to protein family HMM PF02875%3B match to protein family HMM TIGR01087 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0960 CYA_0961 CYA_0961 CYA_0961 973845 975005 + putative cell division protein FtsW identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02614 gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0961 CYA_0962 CYA_0962 CYA_0962 975020 975553 - conserved domain protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0962 CYA_0963 CYA_0963 CYA_0963 975511 976778 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0963 CYA_0964 CYA_0964 CYA_0964 977468 978337 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0964 CYA_0965 CYA_0965 CYA_0965 976929 977528 + conserved hypothetical protein gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0965 CYA_0966 CYA_0966 CYA_0966 978380 979045 - transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00325 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0966 CYA_0967 CYA_0967 surE-2 surE-2 979418 980197 + acid phosphatase SurE identified by match to protein family HMM PF01975%3B match to protein family HMM TIGR00087 gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0967 CYA_0968 CYA_0968 CYA_0968 980254 980715 - conserved hypothetical protein identified by similarity to PIR:AE1929%3B match to protein family HMM PF04543 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0968 CYA_0969 CYA_0969 hisH hisH 980722 981372 - imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit identified by match to protein family HMM PF00117%3B match to protein family HMM PF01174%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR01855 gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0969 CYA_0970 CYA_0970 CYA_0970 981592 982526 + ISSoc5%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0970 CYA_0971 CYA_0971 grpE grpE 982540 983253 - co-chaperone GrpE identified by similarity to SP:P15874%3B match to protein family HMM PF01025 gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0971 CYA_0972 CYA_0972 CYA_0972 983430 985091 - putative 2`%2C3`-cyclic-nucleotide 2`-phosphodiesterase identified by similarity to SP:P26265%3B match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0972 CYA_0973 CYA_0973 CYA_0973 985155 986375 - conserved hypothetical protein identified by match to protein family HMM PF04286 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0973 CYA_0974 CYA_0974 CYA_0974 986439 987371 - conserved hypothetical protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0974 CYA_0975 CYA_0975 CYA_0975 987514 989007 - putative S-layer protein identified by match to protein family HMM PF00395 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0975 CYA_0976 CYA_0976 tas tas 989224 990264 - aldo/keto reductase Tas identified by similarity to SP:Q46933%3B match to protein family HMM PF00248 gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0976 CYA_0977 CYA_0977 CYA_0977 990346 992028 - hypothetical protein identified by Glimmer2%3B putative gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0977 CYA_0978 CYA_0978 CYA_0978 992523 993647 + response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF07228 gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0978 CYA_0979 CYA_0979 CYA_0979 993659 993928 - BolA/YrbA family protein identified by match to protein family HMM PF01722 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0979 CYA_0980 CYA_0980 CYA_0980 994002 994075 - tRNA-Met tRNA gene973 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0980 CYA_0981 CYA_0981 CYA_0981 994257 995468 - ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0981 CYA_0982 CYA_0982 CYA_0982 995539 996033 - hypothetical protein identified by Glimmer2%3B putative gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0982 CYA_0983 CYA_0983 CYA_0983 996509 997660 - carboxylesterase%2C beta-lactamase family identified by match to protein family HMM PF00144 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0983 CYA_0984 CYA_0984 CYA_0984 997798 998757 + transcriptional regulator%2C LysR family identified by similarity to SP:P52693%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0984 CYA_0985 CYA_0985 CYA_0985 998871 999911 + glycosyl transferase family protein identified by match to protein family HMM PF02885 gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0985 CYA_0986 CYA_0986 CYA_0986 1000284 1001570 - Rho termination factor%2C N-terminal domain identified by match to protein family HMM PF07498 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0986 CYA_0987 CYA_0987 CYA_0987 1001623 1001730 - hypothetical protein identified by Glimmer2%3B putative gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0987 CYA_0988 CYA_0988 CYA_0988 1001774 1002013 - hypothetical protein identified by Glimmer2%3B putative gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0988 CYA_0989 CYA_0989 CYA_0989 1001745 1002821 + hypothetical protein identified by Glimmer2%3B putative gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0989 CYA_0990 CYA_0990 CYA_0990 1002934 1004052 + heptosyltransferase family protein identified by match to protein family HMM PF01075 gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0990 CYA_0991 CYA_0991 CYA_0991 1004332 1005240 + putative membrane protein identified by match to protein family HMM PF00892 gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0991 CYA_0992 CYA_0992 CYA_0992 1005261 1006382 - alcohol dehydrogenase%2C iron-containing identified by match to protein family HMM PF00465 gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0992 CYA_0993 CYA_0993 pilM pilM 1006632 1007750 + type 4 fimbrial biogenesis protein PilM identified by similarity to OMNI:NTL03PA05045%3B match to protein family HMM TIGR01175 gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0993 CYA_0994 CYA_0994 pilN pilN 1007814 1008518 + type 4 fimbrial biogenesis protein PilN identified by match to protein family HMM PF05137 gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0994 CYA_0995 CYA_0995 CYA_0995 1008518 1009240 + conserved hypothetical protein gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0995 CYA_0996 CYA_0996 CYA_0996 1009528 1011699 + putative type IV pilus secretin PilQ identified by match to protein family HMM PF00263%3B match to protein family HMM PF07660 gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0996 CYA_0997 CYA_0997 CYA_0997 1011746 1012510 + hypothetical protein identified by Glimmer2%3B putative gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0997 CYA_0998 CYA_0998 CYA_0998 1012515 1013081 - ISSoc4%2C transposase orfB identified by similarity to GB:AAC97587.1 gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0998 CYA_0999 CYA_0999 CYA_0999 1013063 1013461 - ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_0999 CYA_1000 CYA_1000 CYA_1000 1013568 1013966 + hypothetical protein identified by Glimmer2%3B putative gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1000 CYA_1001 CYA_1001 CYA_1001 1014352 1014918 - conserved hypothetical protein identified by similarity to PIR:AE2255 gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1001 CYA_1002 CYA_1002 CYA_1002 1015046 1016581 + Orn/Lys/Arg decarboxylase identified by match to protein family HMM PF00155%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212%3B match to protein family HMM PF01276%3B match to protein family HMM PF03711 gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1002 CYA_1003 CYA_1003 CYA_1003 1016586 1018019 - putative transporter%2C HlyC/CorC (HCC) family identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1003 CYA_1004 CYA_1004 CYA_1004 1018222 1018578 - peptidase propeptide/YPEB domain protein identified by match to protein family HMM PF03413 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1004 CYA_1005 CYA_1005 ilvE ilvE 1018844 1019764 + branched-chain amino acid aminotransferase identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01122 gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1005 CYA_1006 CYA_1006 CYA_1006 1019842 1020354 + putative purine phosphoribosyltransferase identified by similarity to PDB:1HGX_A%3B match to protein family HMM PF00156 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1006 CYA_1007 CYA_1007 CYA_1007 1020398 1024249 - methyltransferase%2C FkbM family identified by match to protein family HMM TIGR01444 gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1007 CYA_1008 CYA_1008 CYA_1008 1025028 1025978 - hypothetical protein identified by Glimmer2%3B putative gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1008 CYA_1009 CYA_1009 CYA_1009 1025994 1026683 - oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1009 CYA_1010 CYA_1010 CYA_1010 1027337 1027531 - hypothetical protein identified by Glimmer2%3B putative gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1010 CYA_1011 CYA_1011 CYA_1011 1027704 1029731 + methyltransferase%2C FkbM family identified by match to protein family HMM TIGR01444 gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1011 CYA_1012 CYA_1012 CYA_1012 1029768 1032461 + macrocin-O-methyltransferase domain protein gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1012 CYA_1013 CYA_1013 CYA_1013 1032528 1033253 - conserved hypothetical protein identified by similarity to PIR:AH2105%3B match to protein family HMM PF05685 gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1013 CYA_1014 CYA_1014 CYA_1014 1033276 1033887 - conserved hypothetical protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error pseudogene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1014 CYA_1015 CYA_1015 lpxD lpxD 1034023 1035054 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase identified by match to protein family HMM PF00132%3B match to protein family HMM PF04613%3B match to protein family HMM TIGR01853 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1015 CYA_1016 CYA_1016 CYA_1016 1035070 1035588 - conserved hypothetical protein identified by similarity to GB:BAC08280.1 gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1016 CYA_1017 CYA_1017 CYA_1017 1035752 1036152 - gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1017 CYA_1018 CYA_1018 CYA_1018 1036257 1036328 + tRNA-Lys tRNA gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1018 CYA_1019 CYA_1019 CYA_1019 1036398 1037417 + hypothetical protein identified by Glimmer2%3B putative gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1019 CYA_1020 CYA_1020 CYA_1020 1037440 1038135 + hypothetical protein identified by Glimmer2%3B putative gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1020 CYA_1021 CYA_1021 CYA_1021 1038333 1041368 + hypothetical protein identified by Glimmer2%3B putative gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1021 CYA_1022 CYA_1022 CYA_1022 1041547 1042437 + leucine rich repeat protein identified by match to protein family HMM PF00560 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1022 CYA_1023 CYA_1023 CYA_1023 1042530 1042799 + conserved hypothetical protein identified by similarity to GB:BAD80637.1 gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1023 CYA_1024 CYA_1024 CYA_1024 1042833 1043561 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1024 CYA_1025 CYA_1025 CYA_1025 1043739 1043951 + CP12 domain protein identified by match to protein family HMM PF02672 gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1025 CYA_1026 CYA_1026 CYA_1026 1044010 1044813 - transporter%2C lead (Pb2+) uptake porter (PbrT) family identified by similarity to GB:CAC28871.1%3B match to protein family HMM PF03239 gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1026 CYA_1027 CYA_1027 msrB msrB 1044863 1045273 - methionine-R-sulfoxide reductase identified by match to protein family HMM PF01641%3B match to protein family HMM TIGR00357 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1027 CYA_1028 CYA_1028 CYA_1028 1045718 1046161 + conserved hypothetical protein identified by similarity to GB:BAC08682.1 gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1028 CYA_1029 CYA_1029 CYA_1029 1046250 1047260 + 4Fe-4S binding domain identified by match to protein family HMM PF00037 gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1029 CYA_1030 CYA_1030 CYA_1030 1047276 1049177 + R3H domain protein identified by match to protein family HMM PF01424 gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1030 CYA_1031 CYA_1031 ubiA ubiA 1049194 1050096 - 4-hydroxybenzoate polyprenyl transferase identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01474 gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1031 CYA_1032 CYA_1032 CYA_1032 1051100 1052437 - polyA polymerase family protein identified by match to protein family HMM PF01743 gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1032 CYA_1033 CYA_1033 CYA_1033 1050354 1051103 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1033 CYA_1034 CYA_1034 hemH hemH 1052607 1053632 - ferrochelatase identified by match to protein family HMM PF00762%3B match to protein family HMM TIGR00109 gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1034 CYA_1035 CYA_1035 CYA_1035 1055040 1055432 - hypothetical protein identified by Glimmer2%3B putative gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1035 CYA_1036 CYA_1036 CYA_1036 1053970 1055072 + ISSoc1%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1036 CYA_1037 CYA_1037 CYA_1037 1055745 1056233 + putative membrane protein identified by similarity to PIR:AD2406 gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1037 CYA_1038 CYA_1038 CYA_1038 1056280 1058187 + putative membrane protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1038 CYA_1039 CYA_1039 CYA_1039 1058181 1059176 + conserved hypothetical protein DUF403 identified by match to protein family HMM PF04168 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1039 CYA_1040 CYA_1040 CYA_1040 1059442 1059936 + transferase hexapaptide repeat protein identified by match to protein family HMM PF00132 gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1040 CYA_1041 CYA_1041 CYA_1041 1060292 1061749 - conserved hypothetical protein identified by match to protein family HMM PF04169%3B match to protein family HMM PF04174 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1041 CYA_1042 CYA_1042 CYA_1042 1061915 1063738 - putative membrane protein gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1042 CYA_1043 CYA_1043 CYA_1043 1063841 1064101 - conserved hypothetical protein identified by similarity to PIR:AB2345 gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1043 CYA_1044 CYA_1044 CYA_1044 1064207 1065829 - X-Pro dipeptidyl-peptidase (S15 family) identified by match to protein family HMM PF02129%3B match to protein family HMM TIGR00976 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1044 CYA_1045 CYA_1045 CYA_1045 1066041 1066232 - hypothetical protein identified by Glimmer2%3B putative gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1045 CYA_1046 CYA_1046 CYA_1046 1066355 1066525 + hypothetical protein identified by Glimmer2%3B putative gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1046 CYA_1047 CYA_1047 CYA_1047 1066528 1067049 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1047 CYA_1048 CYA_1048 CYA_1048 1067117 1067407 + putative pterin-4a-carbinolamine dehydratase identified by match to protein family HMM PF01329 gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1048 CYA_1049 CYA_1049 CYA_1049 1067688 1068644 + NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993 gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1049 CYA_1050 CYA_1050 CYA_1050 1068748 1069734 + ABC transporter%2C ATP-binding protein identified by similarity to GB:AAC36155.1%3B match to protein family HMM PF00005 gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1050 CYA_1051 CYA_1051 CYA_1051 1069764 1070897 - glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1051 CYA_1052 CYA_1052 CYA_1052 1070999 1071130 - hypothetical protein identified by Glimmer2%3B putative gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1052 CYA_1053 CYA_1053 CYA_1053 1071255 1071986 - conserved hypothetical protein identified by similarity to PIR:AF2006 gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1053 CYA_1054 CYA_1054 CYA_1054 1071983 1072150 - hypothetical protein identified by Glimmer2%3B putative gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1054 CYA_1055 CYA_1055 CYA_1055 1072187 1072819 + methyltransferase%2C UbiE/COQ5 family identified by match to protein family HMM PF01209 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1055 CYA_1056 CYA_1056 thiG thiG 1072832 1073605 - thiazole biosynthesis protein ThiG identified by match to protein family HMM PF05690 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1056 CYA_1057 CYA_1057 thiS thiS 1073705 1073902 - thiamine biosynthesis protein ThiS identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01683 gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1057 CYA_1058 CYA_1058 thiO thiO 1073890 1075026 - glycine oxidase ThiO identified by match to protein family HMM PF01266%3B match to protein family HMM TIGR02352 gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1058 CYA_1059 CYA_1059 CYA_1059 1075232 1077295 - 5'-nucleotidase family protein identified by similarity to GB:AAA27331.1%3B match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1059 CYA_1060 CYA_1060 CYA_1060 1077377 1077709 - putative methylated-DNA-[protein]-cysteine S-methyltransferase identified by match to protein family HMM PF01035 gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1060 CYA_1061 CYA_1061 CYA_1061 1077738 1078295 + conserved hypothetical protein gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1061 CYA_1062 CYA_1062 CYA_1062 1078417 1079034 + HupE/UreJ family protein identified by similarity to SP:P27650%3B match to protein family HMM PF04955 gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1062 CYA_1063 CYA_1063 ndk ndk 1079109 1079558 + nucleoside diphosphate kinase identified by similarity to GB:AAK38732.1%3B match to protein family HMM PF00334 gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1063 CYA_1064 CYA_1064 CYA_1064 1079821 1081194 - NitT/TauT family ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1064 CYA_1065 CYA_1065 CYA_1065 1081213 1082940 - NitT/TauT family ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1065 CYA_1066 CYA_1066 CYA_1066 1083027 1083311 - conserved hypothetical protein identified by similarity to PIR:AD2089 gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1066 CYA_1067 CYA_1067 CYA_1067 1083395 1084351 - conserved hypothetical protein gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1067 CYA_1068 CYA_1068 CYA_1068 1084726 1086174 - putative lignostilbene-alpha%2Cbeta-dioxygenase identified by similarity to GB:AAC60447.2%3B match to protein family HMM PF03055 gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1068 CYA_1069 CYA_1069 ffh ffh 1086341 1087792 + signal recognition particle protein identified by similarity to SP:P37105%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959 gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1069 CYA_1070 CYA_1070 CYA_1070 1088233 1088388 - hypothetical protein identified by Glimmer2%3B putative gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1070 CYA_1071 CYA_1071 CYA_1071 1087802 1088257 + RNA methyltransferase%2C TrmH family%2C group 2 identified by match to protein family HMM PF00588 gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1071 CYA_1072 CYA_1072 CYA_1072 1088473 1090218 + penicillin-binding protein identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1072 CYA_1073 CYA_1073 CYA_1073 1090358 1091581 - glycosyl transferase%2C group 2 identified by match to protein family HMM PF00535%3B match to protein family HMM PF04138 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1073 CYA_1074 CYA_1074 CYA_1074 1091762 1094227 - HDIG domain protein identified by match to protein family HMM PF01966%3B match to protein family HMM PF07697%3B match to protein family HMM PF07698%3B match to protein family HMM TIGR00277 gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1074 CYA_1075 CYA_1075 CYA_1075 1094296 1094745 - conserved hypothetical protein identified by similarity to GB:BAD79760.1 gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1075 CYA_1076 CYA_1076 CYA_1076 1094789 1095538 - 4'-phosphopantetheinyl transferase family protein identified by similarity to SP:P39144%3B match to protein family HMM PF01648 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1076 CYA_1077 CYA_1077 CYA_1077 1095621 1096982 + putative cell envelope-related function transcriptional attenuator identified by match to protein family HMM PF03816%3B match to protein family HMM TIGR00350 gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1077 CYA_1078 CYA_1078 ribH ribH 1098940 1099530 - 6%2C7-dimethyl-8-ribityllumazine synthase identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114 gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1078 CYA_1079 CYA_1079 htpG htpG 1097087 1098946 + chaperone protein HtpG identified by similarity to GB:AAD51118.1%3B match to protein family HMM PF00183%3B match to protein family HMM PF02518 gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1079 CYA_1080 CYA_1080 CYA_1080 1100724 1103042 - tetratricopeptide repeat protein identified by match to protein family HMM PF07719 gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1080 CYA_1081 CYA_1081 CYA_1081 1099814 1100842 + transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1081 CYA_1082 CYA_1082 CYA_1082 1103204 1104745 + deoxyribodipyrimidine photolyase family protein identified by match to protein family HMM PF04244 gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1082 CYA_1083 CYA_1083 nrdR nrdR 1104814 1105416 + transcriptional regulator%2C NrdR family identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1083 CYA_1084 CYA_1084 CYA_1084 1105629 1106477 + hypothetical protein identified by Glimmer2%3B putative gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1084 CYA_1085 CYA_1085 rrfA rrfA 1106587 1106706 - 5S ribosomal RNA rRNA gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1085 CYA_1086 CYA_1086 rrlA rrlA 1106765 1109571 - 23S ribosomal RNA rRNA gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1086 CYA_1087 CYA_1087 CYA_1087 1109696 1109771 - tRNA-Ala tRNA gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1087 CYA_1088 CYA_1088 CYA_1088 1109808 1109881 - tRNA-Ile tRNA gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1088 CYA_1089 CYA_1089 rrsA rrsA 1110127 1111450 - 16S ribosomal RNA rRNA gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1089 CYA_1090 CYA_1090 CYA_1090 1111862 1112482 - conserved hypothetical protein TIGR00150 identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150 gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1090 CYA_1091 CYA_1091 lgt-1 lgt-1 1112486 1113340 - prolipoprotein diacylglyceryl transferase identified by similarity to SP:O34752%3B match to protein family HMM PF01790%3B match to protein family HMM TIGR00544 gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1091 CYA_1092 CYA_1092 recA recA 1113642 1114718 + recA protein identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1092 CYA_1093 CYA_1093 CYA_1093 1114734 1115546 - RNA methyltransferase%2C TrmH family identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032 gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1093 CYA_1094 CYA_1094 sun sun 1115580 1116926 - ribosomal RNA small subunit methyltransferase B identified by match to protein family HMM PF01029%3B match to protein family HMM PF01189%3B match to protein family HMM TIGR00563 gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1094 CYA_1095 CYA_1095 CYA_1095 1118160 1118549 - hypothetical protein identified by Glimmer2%3B putative gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1095 CYA_1096 CYA_1096 CYA_1096 1117334 1117759 + ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1096 CYA_1097 CYA_1097 CYA_1097 1118585 1121986 - trehalose synthase/putative maltokinase identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02456%3B match to protein family HMM TIGR02457 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1097 CYA_1098 CYA_1098 CYA_1098 1122234 1123547 - conserved hypothetical protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1098 CYA_1099 CYA_1099 CYA_1099 1123531 1124484 - putative 6-pyruvoyl tetrahydropterin synthase identified by match to protein family HMM PF01242 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1099 CYA_1100 CYA_1100 hom hom 1124636 1125982 + homoserine dehydrogenase identified by match to protein family HMM PF00742%3B match to protein family HMM PF01842%3B match to protein family HMM PF03447 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1100 CYA_1101 CYA_1101 hemG hemG 1126034 1127491 + protoporphyrinogen oxidase identified by match to protein family HMM PF01593%3B match to protein family HMM TIGR00562 gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1101 CYA_1102 CYA_1102 CYA_1102 1128533 1128991 - MAPEG family protein identified by match to protein family HMM PF01124 gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1102 CYA_1103 CYA_1103 CYA_1103 1127421 1128536 + conserved hypothetical protein identified by similarity to PIR:AH1904 gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1103 CYA_1104 CYA_1104 CYA_1104 1129063 1131117 - arsenite-antimonite (ArsAB) efflux family transporter%2C ATP-binding protein identified by match to protein family HMM PF02374%3B match to protein family HMM TIGR00345 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1104 CYA_1105 CYA_1105 CYA_1105 1131148 1131801 - putative membrane protein gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1105 CYA_1106 CYA_1106 CYA_1106 1131805 1132674 - putative iron-sulfur cluster-binding protein identified by similarity to SP:P07324 gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1106 CYA_1107 CYA_1107 CYA_1107 1132684 1133100 - putative iron-sulfur cluster-binding protein identified by similarity to SP:P07324%3B match to protein family HMM PF07845 gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1107 CYA_1108 CYA_1108 CYA_1108 1133198 1135141 - transporter%2C outer membrane receptor (OMR) family identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1108 CYA_1109 CYA_1109 CYA_1109 1135414 1137369 - conserved domain protein identified by match to protein family HMM PF07602 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1109 CYA_1110 CYA_1110 CYA_1110 1137368 1138585 + pentapeptide repeat family protein identified by similarity to GB:BAC08389.1%3B match to protein family HMM PF00805 gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1110 CYA_1111 CYA_1111 CYA_1111 1138774 1139904 + putative membrane protein%2C YjgP/YjgQ family identified by match to protein family HMM PF03739 gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1111 CYA_1112 CYA_1112 ald ald 1140938 1142029 + alanine dehydrogenase identified by match to protein family HMM PF01262%3B match to protein family HMM PF02826%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00518 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1112 CYA_1113 CYA_1113 CYA_1113 1142039 1142671 - 3'-5' exonuclease family protein identified by match to protein family HMM PF01612 gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1113 CYA_1114 CYA_1114 rpsN rpsN 1142911 1143216 - ribosomal protein S14 identified by match to protein family HMM PF00253 gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1114 CYA_1115 CYA_1115 CYA_1115 1143110 1143379 + hypothetical protein identified by Glimmer2%3B putative gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1115 CYA_1116 CYA_1116 CYA_1116 1143681 1145201 - GTP-binding protein identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1116 CYA_1117 CYA_1117 CYA_1117 1143361 1143684 + hypothetical protein identified by Glimmer2%3B putative gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1117 CYA_1118 CYA_1118 CYA_1118 1145282 1145773 - hypothetical protein identified by Glimmer2%3B putative gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1118 CYA_1119 CYA_1119 CYA_1119 1146148 1146600 + hypothetical protein identified by Glimmer2%3B putative gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1119 CYA_1120 CYA_1120 recJ-1 recJ-1 1146623 1148851 - single-stranded-DNA-specific exonuclease RecJ identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644 gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1120 CYA_1121 CYA_1121 CYA_1121 1148888 1148995 - hypothetical protein identified by Glimmer2%3B putative gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1121 CYA_1122 CYA_1122 CYA_1122 1149396 1150319 + Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1122 CYA_1123 CYA_1123 cysH cysH 1150395 1151141 + phosophoadenylyl-sulfate reductase identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR00434 gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1123 CYA_1124 CYA_1124 CYA_1124 1151170 1151457 + antibiotic biosynthesis monooxygenase domain protein identified by match to protein family HMM PF03992 gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1124 CYA_1125 CYA_1125 CYA_1125 1151589 1151933 + transcriptional regulator%2C ArsR family identified by match to protein family HMM PF01022 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1125 CYA_1126 CYA_1126 CYA_1126 1152554 1152952 + ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1126 CYA_1127 CYA_1127 CYA_1127 1152934 1153500 + ISSoc4%2C transposase orfB identified by similarity to GB:AAC97587.1 gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1127 CYA_1128 CYA_1128 CYA_1128 1153631 1154107 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1128 CYA_1129 CYA_1129 CYA_1129 1154063 1155426 + ISSoc3%2C orfB transposase%2C authentic frameshift%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1129 CYA_1130 CYA_1130 CYA_1130 1156649 1157719 - EAL domain protein identified by match to protein family HMM PF00563 gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1130 CYA_1131 CYA_1131 CYA_1131 1155508 1156698 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1131 CYA_1132 CYA_1132 CYA_1132 1157890 1158648 - glyoxalase II family protein identified by similarity to SP:P72933%3B match to protein family HMM PF00753 gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1132 CYA_1133 CYA_1133 CYA_1133 1158655 1158912 - conserved hypothetical protein identified by similarity to GB:BAC91454.1 gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1133 CYA_1134 CYA_1134 CYA_1134 1159046 1159444 - DnaJ domain protein identified by match to protein family HMM PF00226 gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1134 CYA_1135 CYA_1135 rpmF rpmF 1159539 1159721 - ribosomal protein L32 identified by match to protein family HMM PF01783%3B match to protein family HMM TIGR01031 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1135 CYA_1136 CYA_1136 CYA_1136 1160019 1161290 - ISSoc3%2C orfB transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1136 CYA_1137 CYA_1137 CYA_1137 1161246 1161722 + ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1137 CYA_1138 CYA_1138 CYA_1138 1161810 1162904 + CsgG family protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1138 CYA_1139 CYA_1139 CYA_1139 1163149 1163808 + 3-beta hydroxysteroid dehydrogenase/isomerase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02254%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1139 CYA_1140 CYA_1140 CYA_1140 1163923 1166457 + conserved hypothetical protein gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1140 CYA_1141 CYA_1141 CYA_1141 1166464 1166559 + hypothetical protein identified by Glimmer2%3B putative gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1141 CYA_1142 CYA_1142 CYA_1142 1166505 1166915 + conserved hypothetical protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1142 CYA_1143 CYA_1143 CYA_1143 1167658 1167912 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1143 CYA_1144 CYA_1144 CYA_1144 1167978 1168946 - putative aminomethyltransferase identified by match to protein family HMM PF01571 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1144 CYA_1145 CYA_1145 CYA_1145 1169041 1170579 + conserved hypothetical protein gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1145 CYA_1146 CYA_1146 CYA_1146 1170901 1171863 - transporter%2C auxin efflux carrier (AEC) family identified by match to protein family HMM PF03547 gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1146 CYA_1147 CYA_1147 CYA_1147 1170710 1170904 + conserved hypothetical protein gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1147 CYA_1148 CYA_1148 ispH ispH 1171869 1173149 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1148 CYA_1149 CYA_1149 CYA_1149 1173297 1173572 - hypothetical protein identified by Glimmer2%3B putative gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1149 CYA_1150 CYA_1150 CYA_1150 1173595 1174071 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1150 CYA_1151 CYA_1151 glmU glmU 1174189 1176054 - UDP-N-acetylglucosamine pyrophosphorylase identified by match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM PF03479 gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1151 CYA_1152 CYA_1152 CYA_1152 1176173 1176601 + conserved hypothetical protein gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1152 CYA_1153 CYA_1153 CYA_1153 1176916 1177371 + iron-sulfur cluster-binding protein%2C Rieske family identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR01409 gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1153 CYA_1154 CYA_1154 CYA_1154 1177432 1178553 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1154 CYA_1155 CYA_1155 CYA_1155 1178651 1179544 + PRC-barrel domain protein identified by match to protein family HMM PF05239 gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1155 CYA_1156 CYA_1156 CYA_1156 1179716 1180696 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1156 CYA_1157 CYA_1157 infA infA 1180726 1180950 - translation initiation factor IF-1 identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00008 gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1157 CYA_1158 CYA_1158 map-2 map-2 1181081 1181854 - methionine aminopeptidase%2C type I identified by similarity to SP:P07906%3B match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1158 CYA_1159 CYA_1159 adk adk 1181893 1182474 - adenylate kinase identified by similarity to SP:P27142%3B match to protein family HMM PF00406%3B match to protein family HMM TIGR01351 gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1159 CYA_1160 CYA_1160 secY secY 1182474 1183772 - preprotein translocase%2C SecY subunit identified by match to protein family HMM PF00344%3B match to protein family HMM TIGR00967 gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1160 CYA_1161 CYA_1161 rplO rplO 1183881 1184354 - ribosomal protein L15 identified by match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071 gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1161 CYA_1162 CYA_1162 rpsE rpsE 1184378 1184914 - ribosomal protein S5 identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021 gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1162 CYA_1163 CYA_1163 rplR rplR 1184933 1185301 - ribosomal protein L18 identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060 gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1163 CYA_1164 CYA_1164 rplF rplF 1185304 1185849 - ribosomal protein L6 identified by match to protein family HMM PF00347 gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1164 CYA_1165 CYA_1165 rpsH rpsH 1185876 1186280 - ribosomal protein S8 identified by match to protein family HMM PF00410 gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1165 CYA_1166 CYA_1166 rplE rplE 1186341 1186883 - ribosomal protein L5 identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673 gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1166 CYA_1167 CYA_1167 rplX rplX 1186940 1187338 - ribosomal protein L24 identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079 gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1167 CYA_1168 CYA_1168 rplN rplN 1187338 1187706 - ribosomal protein L14 identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1168 CYA_1169 CYA_1169 rpsQ rpsQ 1187703 1187954 - ribosomal protein S17 identified by match to protein family HMM PF00366 gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1169 CYA_1170 CYA_1170 rpmC rpmC 1187954 1188190 - ribosomal protein L29 identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1170 CYA_1171 CYA_1171 rplP rplP 1188208 1188684 - ribosomal protein L16 identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164 gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1171 CYA_1172 CYA_1172 rpsC rpsC 1188740 1189486 - ribosomal protein S3 identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1172 CYA_1173 CYA_1173 rplV rplV 1189528 1189899 - ribosomal protein L22 identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044 gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1173 CYA_1174 CYA_1174 rpsS rpsS 1189942 1190223 - ribosomal protein S19 identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050 gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1174 CYA_1175 CYA_1175 rplB rplB 1190302 1191186 - ribosomal protein L2 identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171 gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1175 CYA_1176 CYA_1176 rplW rplW 1191247 1191546 - ribosomal protein L23 identified by match to protein family HMM PF00276 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1176 CYA_1177 CYA_1177 rplD rplD 1191539 1192519 - ribosomal protein L4 identified by match to protein family HMM PF00573 gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1177 CYA_1178 CYA_1178 rplC rplC 1192571 1193215 - ribosomal protein L3 identified by match to protein family HMM PF00297 gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1178 CYA_1179 CYA_1179 CYA_1179 1193692 1195644 + conserved hypothetical protein gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1179 CYA_1180 CYA_1180 CYA_1180 1195819 1196673 + TPR domain protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 pseudogene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1180 CYA_1181 CYA_1181 CYA_1181 1196824 1198029 + ISSoc7%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1181 CYA_1182 CYA_1182 CYA_1182 1198072 1198404 + conserved hypothetical protein%2C truncation identified by similarity to GB:BAC91517.1 gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1182 CYA_1183 CYA_1183 CYA_1183 1198401 1199069 + hypothetical protein identified by Glimmer2%3B putative gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1183 CYA_1184 CYA_1184 CYA_1184 1199237 1199788 + conserved domain protein gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1184 CYA_1185 CYA_1185 CYA_1185 1199739 1199873 + hypothetical protein identified by Glimmer2%3B putative gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1185 CYA_1186 CYA_1186 metK metK 1200073 1201317 - S-adenosylmethionine synthetase identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034 gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1186 CYA_1187 CYA_1187 CYA_1187 1201814 1202182 - putative lipoprotein gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1187 CYA_1188 CYA_1188 cobO-1 cobO-1 1202372 1203058 + cob(I)alamin adenosyltransferase identified by match to protein family HMM PF02572%3B match to protein family HMM TIGR00708 gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1188 CYA_1189 CYA_1189 cobB cobB 1203076 1204482 + cobyrinic acid a%2Cc-diamide synthase identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00379 gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1189 CYA_1190 CYA_1190 CYA_1190 1205228 1205575 + conserved hypothetical protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1190 CYA_1191 CYA_1191 CYA_1191 1205694 1205766 - tRNA-Glu tRNA gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1191 CYA_1192 CYA_1192 CYA_1192 1205839 1206003 - hypothetical protein identified by Glimmer2%3B putative gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1192 CYA_1193 CYA_1193 clpP clpP 1206093 1206695 + ATP-dependent Clp protease%2C proteolytic subunit ClpP identified by match to protein family HMM PF00574%3B match to protein family HMM TIGR00493 gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1193 CYA_1194 CYA_1194 cbbL cbbL 1207204 1208628 + ribulose bisphosphate carboxylase%2C large subunit identified by match to protein family HMM PF00016%3B match to protein family HMM PF02788 gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1194 CYA_1195 CYA_1195 rbcX rbcX 1208699 1209106 + chaperon-like protein RbcX identified by match to protein family HMM PF02341 gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1195 CYA_1196 CYA_1196 cbbS cbbS 1209115 1209447 + ribulose bisphosphate carboxylase%2C small subunit identified by match to protein family HMM PF00101 gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1196 CYA_1197 CYA_1197 CYA_1197 1209705 1210511 - putative membrane protein identified by match to protein family HMM PF01940%3B match to protein family HMM TIGR00297 gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1197 CYA_1198 CYA_1198 CYA_1198 1210512 1210602 - tRNA-Ser tRNA gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1198 CYA_1199 CYA_1199 CYA_1199 1210709 1211260 - hypothetical protein identified by Glimmer2%3B putative gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1199 CYA_1200 CYA_1200 CYA_1200 1210661 1211167 + hypothetical protein identified by Glimmer2%3B putative gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1200 CYA_1201 CYA_1201 CYA_1201 1211787 1212764 + PhoH family protein identified by match to protein family HMM PF02562 gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1201 CYA_1202 CYA_1202 CYA_1202 1213464 1214252 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1202 CYA_1203 CYA_1203 CYA_1203 1212761 1213486 + haloacid dehalogenase%2C IA family protein identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02252 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1203 CYA_1204 CYA_1204 CYA_1204 1214240 1214983 - acyltransferase family protein identified by match to protein family HMM PF01553 gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1204 CYA_1205 CYA_1205 cobO-2 cobO-2 1214995 1216128 - cob(I)alamin adenosyltransferase identified by match to protein family HMM PF02572 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1205 CYA_1206 CYA_1206 CYA_1206 1216339 1217253 + putative cysteine synthase B identified by similarity to SP:P16703%3B match to protein family HMM PF00291%3B match to protein family HMM TIGR01136 gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1206 CYA_1207 CYA_1207 CYA_1207 1217328 1217408 + tRNA-Leu tRNA gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1207 CYA_1208 CYA_1208 CYA_1208 1217481 1217972 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1208 CYA_1209 CYA_1209 CYA_1209 1218655 1219383 + hydrophobic amino acid uptake transporter (HAAT) ABC transporter family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1209 CYA_1210 CYA_1210 CYA_1210 1219396 1220859 - pyruvate kinase barrel domain protein identified by match to protein family HMM PF00224 gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1210 CYA_1211 CYA_1211 CYA_1211 1221034 1222236 + putative permease%2C YjgP/YjgQ family identified by match to protein family HMM PF03739 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1211 CYA_1212 CYA_1212 CYA_1212 1222248 1223261 - phosphate uptake transporter (PhoT) ABC transporter family%2C substrate-binding protein identified by similarity to SP:P39665 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1212 CYA_1213 CYA_1213 CYA_1213 1223354 1225405 - exoribonuclease%2C VacB/RNB family identified by match to protein family HMM PF00773 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1213 CYA_1214 CYA_1214 CYA_1214 1225785 1226417 + DNA-binding response regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1214 CYA_1215 CYA_1215 CYA_1215 1226617 1227825 + coenzyme F420 hydrogenase/dehydrogenase family protein identified by match to protein family HMM PF04422%3B match to protein family HMM PF04432 gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1215 CYA_1216 CYA_1216 CYA_1216 1227848 1229044 - aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1216 CYA_1217 CYA_1217 engA engA 1229210 1230589 + GTP-binding protein EngA identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1217 CYA_1218 CYA_1218 smpB smpB 1230625 1231089 + SsrA-binding protein identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1218 CYA_1219 CYA_1219 CYA_1219 1231275 1231877 - glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1219 CYA_1220 CYA_1220 era era 1231949 1233025 - GTP-binding protein Era identified by similarity to SP:P42182%3B match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436%3B match to protein family HMM TIGR00650 gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1220 CYA_1221 CYA_1221 CYA_1221 1233034 1234773 - SpoIID/LytB domain protein identified by match to protein family HMM TIGR02669 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1221 CYA_1222 CYA_1222 CYA_1222 1234909 1235271 + gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1222 CYA_1223 CYA_1223 CYA_1223 1235330 1235773 - putative Bdr protein gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1223 CYA_1224 CYA_1224 CYA_1224 1235827 1236822 - ATPase%2C AAA family identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1224 CYA_1225 CYA_1225 CYA_1225 1237389 1237547 - hypothetical protein identified by Glimmer2%3B putative gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1225 CYA_1226 CYA_1226 CYA_1226 1236952 1237392 + rrf2 family protein identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1226 CYA_1227 CYA_1227 CYA_1227 1237546 1238460 + putative ribosomal protein S1 identified by similarity to SP:P46228%3B match to protein family HMM PF00575 gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1227 CYA_1228 CYA_1228 CYA_1228 1238961 1240181 + putative S-layer protein identified by match to protein family HMM PF00395 gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1228 CYA_1229 CYA_1229 CYA_1229 1240339 1240980 - ExoD family protein identified by match to protein family HMM PF06055 gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1229 CYA_1230 CYA_1230 CYA_1230 1241544 1242302 - gas vesicle protein%2C GvpL/GvpF family identified by similarity to SP:P55149%3B match to protein family HMM PF06386 gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1230 CYA_1231 CYA_1231 CYA_1231 1242268 1243389 - nucleotidyl transferase family protein identified by match to protein family HMM PF00483 gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1231 CYA_1232 CYA_1232 hisG hisG 1243652 1244401 + ATP phosphoribosyltransferase identified by similarity to SP:O34520%3B match to protein family HMM PF01634%3B match to protein family HMM TIGR00070 gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1232 CYA_1233 CYA_1233 psbO psbO 1244601 1245395 + photosystem II manganese-stabilizing protein identified by similarity to SP:P55221%3B match to protein family HMM PF01716 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1233 CYA_1234 CYA_1234 CYA_1234 1245414 1245695 + hypothetical protein identified by Glimmer2%3B putative gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1234 CYA_1235 CYA_1235 CYA_1235 1246105 1247484 + putative lipoprotein gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1235 CYA_1236 CYA_1236 CYA_1236 1247523 1247939 + conserved hypothetical protein identified by similarity to GB:BAD79565.1 gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1236 CYA_1237 CYA_1237 CYA_1237 1247911 1249035 + polyamine ABC transporter%2C polyamine-binding protein identified by similarity to SP:P23861%3B match to protein family HMM TIGR01409 gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1237 CYA_1238 CYA_1238 tig tig 1249105 1250778 - trigger factor identified by similarity to SP:P80698%3B match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1238 CYA_1239 CYA_1239 CYA_1239 1250867 1251250 - conserved hypothetical protein gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1239 CYA_1240 CYA_1240 CYA_1240 1251335 1252369 - cytochrome c assembly protein identified by match to protein family HMM PF01578 gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1240 CYA_1241 CYA_1241 CYA_1241 1252474 1253853 + conserved hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1241 CYA_1242 CYA_1242 gcvT gcvT 1255463 1256599 - glycine cleavage system T protein identified by match to protein family HMM PF01571%3B match to protein family HMM TIGR00528 gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1242 CYA_1243 CYA_1243 CYA_1243 1254523 1255479 + RNA polymerase sigma factor identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545 gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1243 CYA_1244 CYA_1244 gloA gloA 1256666 1257100 + lactoylglutathione lyase identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR00068 gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1244 CYA_1245 CYA_1245 CYA_1245 1257125 1258216 - TonB family protein identified by match to protein family HMM TIGR01352 gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1245 CYA_1246 CYA_1246 CYA_1246 1258476 1258955 + glyoxalase family protein identified by match to protein family HMM PF00903 gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1246 CYA_1247 CYA_1247 CYA_1247 1258973 1259830 + conserved hypothetical protein identified by match to protein family HMM PF06485 gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1247 CYA_1248 CYA_1248 prfB prfB 1261707 1262835 - peptide chain release factor 2%2C programmed frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P28367%3B match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020 pseudogene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1248 CYA_1249 CYA_1249 menC menC 1260709 1261710 + O-succinylbenzoate synthetase identified by match to protein family HMM TIGR01927 gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1249 CYA_1250 CYA_1250 CYA_1250 1263499 1264620 - putative methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1250 CYA_1251 CYA_1251 CYA_1251 1263140 1263502 + conserved hypothetical protein gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1251 CYA_1252 CYA_1252 CYA_1252 1264886 1266106 - GAF domain protein identified by match to protein family HMM PF01590%3B match to protein family HMM PF01966 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1252 CYA_1253 CYA_1253 pth pth 1266259 1266936 + peptidyl-tRNA hydrolase identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447 gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1253 CYA_1254 CYA_1254 CYA_1254 1266981 1268219 - putative membrane protein identified by match to protein family HMM PF01594 gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1254 CYA_1255 CYA_1255 CYA_1255 1268403 1269422 - hypothetical protein identified by Glimmer2%3B putative gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1255 CYA_1256 CYA_1256 leuS leuS 1270024 1272645 - leucyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM TIGR00396 gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1256 CYA_1257 CYA_1257 petH petH 1272774 1273664 - ferredoxin--NADP reductase identified by similarity to SP:P00454%3B match to protein family HMM PF00175 gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1257 CYA_1258 CYA_1258 prk prk 1273982 1274989 + phosphoribulokinase identified by similarity to SP:P37101%3B match to protein family HMM PF00485 gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1258 CYA_1259 CYA_1259 pgl pgl 1275064 1275795 + 6-phosphogluconolactonase identified by match to protein family HMM PF01182%3B match to protein family HMM TIGR01198 gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1259 CYA_1260 CYA_1260 CYA_1260 1275911 1276081 + conserved hypothetical protein identified by similarity to GB:BAC09330.1 gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1260 CYA_1261 CYA_1261 CYA_1261 1276737 1277627 + transglutaminase family protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF01841 pseudogene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1261 CYA_1262 CYA_1262 CYA_1262 1277778 1278923 + conserved hypothetical protein identified by similarity to GB:BAD71308.1 gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1262 CYA_1263 CYA_1263 CYA_1263 1279028 1279534 + hypothetical protein identified by Glimmer2%3B putative gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1263 CYA_1264 CYA_1264 minC minC 1279684 1280436 + septum site-determining protein MinC identified by match to protein family HMM PF03775%3B match to protein family HMM TIGR01222 gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1264 CYA_1265 CYA_1265 minD minD 1280433 1281239 + septum site-determining protein MinD identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR01968 gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1265 CYA_1266 CYA_1266 minE minE 1281330 1281692 + cell division topological specificity factor MinE identified by match to protein family HMM PF03776%3B match to protein family HMM TIGR01215 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1266 CYA_1267 CYA_1267 CYA_1267 1284112 1284456 - conserved hypothetical protein identified by similarity to SP:P39323%3B match to protein family HMM PF03674 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1267 CYA_1268 CYA_1268 CYA_1268 1281926 1284115 + transporter%2C monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00999 gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1268 CYA_1269 CYA_1269 CYA_1269 1284501 1285112 - conserved hypothetical protein TIGR00023 identified by match to protein family HMM PF02660%3B match to protein family HMM TIGR00023 gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1269 CYA_1270 CYA_1270 holB holB 1285137 1286150 - DNA polymerase III%2C delta' subunit identified by match to protein family HMM TIGR00678 gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1270 CYA_1271 CYA_1271 accB accB 1286275 1286754 - acetyl-CoA carboxylase%2C biotin carboxyl carrier protein identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531 gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1271 CYA_1272 CYA_1272 efp efp 1286822 1287379 - translation elongation factor P identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM TIGR00038 gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1272 CYA_1273 CYA_1273 CYA_1273 1287416 1288099 - glycoprotease family protein identified by match to protein family HMM PF00814 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1273 CYA_1274 CYA_1274 psbA-1 psbA-1 1288198 1289262 + photosystem II protein D1 identified by match to protein family HMM PF00124%3B match to protein family HMM TIGR01151 gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1274 CYA_1275 CYA_1275 CYA_1275 1289332 1289757 - hypothetical protein identified by Glimmer2%3B putative gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1275 CYA_1276 CYA_1276 CYA_1276 1289747 1289896 + hypothetical protein identified by Glimmer2%3B putative gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1276 CYA_1277 CYA_1277 CYA_1277 1289987 1290391 - conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1277 CYA_1279 CYA_1279 CYA_1279 1290363 1291310 - ISSoc4%2C transposase orfAB identified by similarity to GB:AAC97588.1 gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1279 CYA_1280 CYA_1280 CYA_1280 1291474 1291935 - TatC family protein%2C truncation gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1280 CYA_1281 CYA_1281 CYA_1281 1291390 1291635 + conserved hypothetical protein identified by similarity to GB:AAS69771.1 gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1281 CYA_1282 CYA_1282 CYA_1282 1292098 1293303 - polar amino amino acid ABC transporter (PAAT) family%2C permease protein identified by similarity to SP:Q52814%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1282 CYA_1283 CYA_1283 CYA_1283 1293307 1294479 - polar amino amino acid ABC transporter (PAAT) family%2C permease protein identified by similarity to SP:Q52813%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1283 CYA_1284 CYA_1284 CYA_1284 1294588 1295625 - polar amino amino acid ABC transporter (PAAT) family%2C amino acid-binding protein identified by similarity to SP:Q52812%3B match to protein family HMM PF00497 gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1284 CYA_1285 CYA_1285 CYA_1285 1295889 1296677 + polar amino amino acid ABC transporter (PAAT) family%2C ATP-binding protein identified by similarity to SP:Q52815%3B match to protein family HMM PF00005 gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1285 CYA_1286 CYA_1286 CYA_1286 1296686 1297534 - conserved hypothetical protein identified by similarity to GB:AAV47563.1 gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1286 CYA_1287 CYA_1287 CYA_1287 1297563 1297778 + hypothetical protein identified by Glimmer2%3B putative gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1287 CYA_1288 CYA_1288 CYA_1288 1297908 1299323 + hydrophobic amino acid uptake ABC transporter (HAAT) family%2C amino acid-binding protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error pseudogene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1288 CYA_1289 CYA_1289 CYA_1289 1300215 1300781 - ISSoc4%2C transposase orfB identified by similarity to GB:AAC97588.1 gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1289 CYA_1290 CYA_1290 trpA-2 trpA-2 1299385 1300230 + tryptophan synthase%2C alpha subunit identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262 gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1290 CYA_1291 CYA_1291 CYA_1291 1300763 1301161 - ISSoc4%2C transposase orfA identified by similarity to GB:AAC97588.1 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1291 CYA_1292 CYA_1292 CYA_1292 1301241 1301537 + conserved domain protein gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1292 CYA_1293 CYA_1293 CYA_1293 1301518 1304331 + putative type III restriction-modification system%2C Res subunit identified by match to protein family HMM PF04851 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1293 CYA_1294 CYA_1294 CYA_1294 1304681 1305313 + anaerobic ribonucleotide reductase activating protein identified by similarity to SP:P39329 gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1294 CYA_1295 CYA_1295 CYA_1295 1305333 1305617 - hypothetical protein identified by Glimmer2%3B putative gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1295 CYA_1296 CYA_1296 CYA_1296 1305857 1306660 + transporter%2C stomatin/podocin/band 7/nephrosis.2/SPFH (Stomatin) family identified by match to protein family HMM PF01145 gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1296 CYA_1297 CYA_1297 CYA_1297 1306701 1307639 + HflC/HflK family protein identified by match to protein family HMM PF01145 gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1297 CYA_1298 CYA_1298 CYA_1298 1307640 1308344 - ComF family protein gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1298 CYA_1299 CYA_1299 rpsL rpsL 1308542 1308949 + ribosomal protein S12 identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1299 CYA_1300 CYA_1300 rpsG rpsG 1308993 1309463 + ribosomal protein S7 identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029 gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1300 CYA_1301 CYA_1301 fusA fusA 1309620 1311752 + translation elongation factor G identified by similarity to SP:P13551%3B match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484 gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1301 CYA_1302 CYA_1302 tuf tuf 1311775 1313004 + translation elongation factor Tu identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1302 CYA_1303 CYA_1303 rpsJ rpsJ 1313098 1313415 + ribosomal protein S10 identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049 gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1303 CYA_1304 CYA_1304 CYA_1304 1314340 1315251 - methylenetetrahydrofolate reductase family protein identified by match to protein family HMM PF02219 gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1304 CYA_1305 CYA_1305 dapB dapB 1313462 1314343 + dihydrodipicolinate reductase identified by similarity to SP:P42976%3B match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036 gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1305 CYA_1306 CYA_1306 CYA_1306 1315337 1316857 - hypothetical protein identified by Glimmer2%3B putative gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1306 CYA_1307 CYA_1307 CYA_1307 1317026 1317757 - conserved hypothetical protein gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1307 CYA_1308 CYA_1308 CYA_1308 1318030 1319391 - oxidoreductase%2C FAD-dependent identified by match to protein family HMM PF01266 gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1308 CYA_1309 CYA_1309 CYA_1309 1319466 1319630 - hypothetical protein identified by Glimmer2%3B putative gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1309 CYA_1310 CYA_1310 tatC tatC 1319891 1320673 - Sec-independent protein translocase TatC identified by match to protein family HMM PF00902%3B match to protein family HMM TIGR00945 gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1310 CYA_1311 CYA_1311 CYA_1311 1321050 1321982 + ISSoc4%2C transposase orfAB identified by similarity to GB:AAC97588.1 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1311 CYA_1312 CYA_1312 CYA_1312 1322087 1322407 - nucleotidyltransferase domain protein identified by match to protein family HMM PF01909 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1312 CYA_1313 CYA_1313 CYA_1313 1322404 1322736 - putative DNA methyltransferase gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1313 CYA_1314 CYA_1314 CYA_1314 1322989 1326478 - putative DNA methyltransferase%2C intein-containing%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF04480%3B match to protein family HMM TIGR01443 pseudogene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1314 CYA_1316 CYA_1316 CYA_1316 1326864 1329119 - DNA internalization competence protein%2C ComEC/Rec2 family identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360 gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1316 CYA_1317 CYA_1317 CYA_1317 1329550 1329765 + conserved hypothetical protein gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1317 CYA_1318 CYA_1318 gspO gspO 1329842 1330684 + prepilin peptidase identified by similarity to SP:P45794%3B match to protein family HMM PF01478%3B match to protein family HMM PF06750 gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1318 CYA_1319 CYA_1319 chlH chlH 1330745 1334707 - magnesium chelatase%2C H subunit identified by match to protein family HMM PF02514%3B match to protein family HMM TIGR02025 gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1319 CYA_1320 CYA_1320 CYA_1320 1335692 1335907 + ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1320 CYA_1321 CYA_1321 pcrA pcrA 1336315 1338645 - ATP-dependent DNA helicase PcrA identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01073 gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1321 CYA_1322 CYA_1322 CYA_1322 1338793 1339422 + hypothetical protein identified by Glimmer2%3B putative gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1322 CYA_1323 CYA_1323 CYA_1323 1339537 1340181 + hypothetical protein identified by Glimmer2%3B putative gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1323 CYA_1324 CYA_1324 dapF dapF 1340188 1341045 - diaminopimelate epimerase identified by match to protein family HMM PF01678%3B match to protein family HMM TIGR00652 gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1324 CYA_1325 CYA_1325 psbN psbN 1341084 1341215 - photosystem II reaction center protein PsbN identified by match to protein family HMM PF02468 gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1325 CYA_1326 CYA_1326 psbH psbH 1341406 1341609 + photosystem II reaction center protein PsbH identified by similarity to SP:Q7U9I7%3B match to protein family HMM PF00737 gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1326 CYA_1327 CYA_1327 argJ argJ 1341633 1342853 - arginine biosynthesis bifunctional protein ArgJ identified by similarity to SP:Q07908%3B match to protein family HMM PF01960%3B match to protein family HMM TIGR00120 gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1327 CYA_1328 CYA_1328 CYA_1328 1343098 1343904 + ABC transporter%2C ATP-binding protein Homologous to ATP-binding members of TCDB 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family (Similar to 3.A.1.12 and 3.A.1.17) and 3.A.1.17. The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16)%3B identified by match to protein family HMM PF00005 gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1328 CYA_1329 CYA_1329 CYA_1329 1344208 1345005 + ABC transporter%2C permease protein Homologous to permease members of TCDB 3.A.1.17 The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16) and 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family%3B identified by match to protein family HMM PF00528 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1329 CYA_1330 CYA_1330 CYA_1330 1345120 1345192 - tRNA-Phe tRNA gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1330 CYA_1331 CYA_1331 CYA_1331 1345253 1345906 - transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1331 CYA_1332 CYA_1332 CYA_1332 1346103 1347674 - conserved hypothetical protein identified by similarity to PIR:AC2404 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1332 CYA_1333 CYA_1333 CYA_1333 1347730 1348299 - hypothetical protein identified by Glimmer2%3B putative gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1333 CYA_1334 CYA_1334 CYA_1334 1348335 1349336 - oxidoreductase%2C zinc-binding dehydrogenase family identified by match to protein family HMM PF00107 gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1334 CYA_1335 CYA_1335 CYA_1335 1349497 1349640 + hypothetical protein identified by Glimmer2%3B putative gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1335 CYA_1336 CYA_1336 CYA_1336 1349640 1350317 + conserved hypothetical protein gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1336 CYA_1337 CYA_1337 apcB-1 apcB-1 1350319 1350822 - allophycocyanin%2C beta subunit identified by match to protein family HMM PF00502%3B match to protein family HMM TIGR01337 gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1337 CYA_1338 CYA_1338 truB truB 1351048 1351947 - tRNA pseudouridine synthase B identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431 gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1338 CYA_1339 CYA_1339 CYA_1339 1352022 1353053 + putative membrane protein identified by match to protein family HMM PF00892 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1339 CYA_1340 CYA_1340 trpS trpS 1353066 1354061 - tryptophanyl-tRNA synthetase identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233 gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1340 CYA_1341 CYA_1341 CYA_1341 1354154 1354489 + conserved hypothetical protein gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1341 CYA_1342 CYA_1342 ycf3 ycf3 1354567 1355088 + photosystem I assembly protein Ycf3 identified by similarity to SP:Q8DIQ6%3B match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1342 CYA_1343 CYA_1343 gatC gatC 1355156 1355449 + glutamyl-tRNA(Gln) amidotransferase%2C C subunit identified by match to protein family HMM PF02686%3B match to protein family HMM TIGR00135 gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1343 CYA_1344 CYA_1344 CYA_1344 1355452 1355523 - tRNA-Lys tRNA gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1344 CYA_1345 CYA_1345 CYA_1345 1355624 1356022 + gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1345 CYA_1346 CYA_1346 CYA_1346 1356160 1358178 - copper amine oxidase identified by similarity to SP:Q07123%3B match to protein family HMM PF01179%3B match to protein family HMM PF02727%3B match to protein family HMM PF02728 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1346 CYA_1347 CYA_1347 CYA_1347 1358712 1358843 - hypothetical protein identified by Glimmer2%3B putative gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1347 CYA_1348 CYA_1348 CYA_1348 1361661 1361736 - tRNA-Arg tRNA gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1348 CYA_1349 CYA_1349 CYA_1349 1359018 1361663 + sensory box histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1349 CYA_1350 CYA_1350 CYA_1350 1361894 1362340 + conserved hypothetical protein gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1350 CYA_1351 CYA_1351 CYA_1351 1362669 1362881 - conserved hypothetical protein gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1351 CYA_1352 CYA_1352 CYA_1352 1363175 1363248 + tRNA-Pro tRNA gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1352 CYA_1353 CYA_1353 folC folC 1363311 1364600 - folylpolyglutamate synthase identified by similarity to SP:Q05865%3B match to protein family HMM TIGR01499 gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1353 CYA_1354 CYA_1354 serA serA 1364668 1366251 - D-3-phosphoglycerate dehydrogenase identified by match to protein family HMM PF00389%3B match to protein family HMM PF01842%3B match to protein family HMM PF02826%3B match to protein family HMM TIGR01327 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1354 CYA_1355 CYA_1355 CYA_1355 1366455 1366745 - conserved hypothetical protein identified by similarity to PIR:S77467 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1355 CYA_1356 CYA_1356 CYA_1356 1367432 1367542 - hypothetical protein identified by Glimmer2%3B putative gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1356 CYA_1357 CYA_1357 CYA_1357 1367537 1367761 + ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1357 CYA_1358 CYA_1358 CYA_1358 1367795 1368193 + ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1358 CYA_1359 CYA_1359 CYA_1359 1368726 1369295 - ISSoc5%2C transposase%2C truncation gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1359 CYA_1360 CYA_1360 CYA_1360 1368175 1368741 + ISSoc4%2C transposase orfB identified by similarity to PIR:AI1851 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1360 CYA_1361 CYA_1361 purL purL 1369435 1371735 + phosphoribosylformylglycinamidine synthase II identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01736 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1361 CYA_1362 CYA_1362 trxB trxB 1371802 1373232 - thioredoxin-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF00085%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292 gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1362 CYA_1363 CYA_1363 glnA glnA 1373605 1375029 + glutamine synthetase%2C type I identified by match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653 gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1363 CYA_1364 CYA_1364 CYA_1364 1375295 1375942 + hypothetical protein identified by Glimmer2%3B putative gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1364 CYA_1365 CYA_1365 CYA_1365 1376021 1376737 + oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106 gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1365 CYA_1366 CYA_1366 napA napA 1376917 1378974 + transporter%2C monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00582%3B match to protein family HMM PF00999 gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1366 CYA_1367 CYA_1367 CYA_1367 1379067 1379558 - conserved hypothetical protein gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1367 CYA_1368 CYA_1368 recR recR 1379706 1380305 - recombination protein RecR identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1368 CYA_1369 CYA_1369 CYA_1369 1380327 1380662 - conserved hypothetical protein TIGR00103 identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103 gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1369 CYA_1370 CYA_1370 CYA_1370 1380830 1381726 + putative sn-glycerol-3-phosphate ABC transporter%2C permease protein identified by similarity to SP:P10906%3B match to protein family HMM PF00528 gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1370 CYA_1371 CYA_1371 ubiD ubiD 1381763 1383271 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by similarity to SP:P26615%3B match to protein family HMM PF01977%3B match to protein family HMM TIGR00148 gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1371 CYA_1372 CYA_1372 CYA_1372 1383293 1384507 + transporter%2C arsenite-antimonite (ArsAB) efflux family gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1372 CYA_1373 CYA_1373 CYA_1373 1384524 1384889 - hypothetical protein identified by Glimmer2%3B putative gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1373 CYA_1374 CYA_1374 CYA_1374 1384977 1385594 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1374 CYA_1375 CYA_1375 CYA_1375 1385449 1386729 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1375 CYA_1376 CYA_1376 CYA_1376 1386920 1387207 + hypothetical protein identified by Glimmer2%3B putative gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1376 CYA_1377 CYA_1377 CYA_1377 1387257 1387394 - hypothetical protein identified by Glimmer2%3B putative gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1377 CYA_1378 CYA_1378 CYA_1378 1387369 1387680 + conserved hypothetical protein gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1378 CYA_1379 CYA_1379 CYA_1379 1387684 1388040 - conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1379 CYA_1380 CYA_1380 CYA_1380 1389237 1389761 - conserved hypothetical protein identified by similarity to GB:BAC09114.1 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1380 CYA_1381 CYA_1381 CYA_1381 1388536 1389240 + DnaJ domain protein identified by match to protein family HMM PF00226 gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1381 CYA_1382 CYA_1382 CYA_1382 1389990 1390490 - putative membrane protein gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1382 CYA_1383 CYA_1383 CYA_1383 1390490 1390939 - transcriptional regulator%2C Fur family identified by match to protein family HMM PF01475 gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1383 CYA_1384 CYA_1384 CYA_1384 1390974 1391297 - conserved hypothetical protein identified by similarity to GB:BAC09596.1 gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1384 CYA_1385 CYA_1385 clpS-1 clpS-1 1392525 1392830 - ATP-dependent Clp protease adaptor protein ClpS identified by match to protein family HMM PF02617 gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1385 CYA_1386 CYA_1386 CYA_1386 1391449 1392576 + conserved hypothetical protein TIGR00303 identified by match to protein family HMM PF02277%3B match to protein family HMM TIGR00303 gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1386 CYA_1387 CYA_1387 CYA_1387 1393034 1394890 - conserved domain protein gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1387 CYA_1388 CYA_1388 CYA_1388 1394953 1395348 - conserved hypothetical protein gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1388 CYA_1389 CYA_1389 CYA_1389 1395439 1396113 + riboflavin biosynthesis protein RibD C-terminal domain protein identified by match to protein family HMM PF01872 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1389 CYA_1390 CYA_1390 CYA_1390 1396327 1396509 - hypothetical protein identified by Glimmer2%3B putative gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1390 CYA_1391 CYA_1391 CYA_1391 1396721 1396921 + conserved hypothetical protein identified by similarity to GB:BAC07925.1 gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1391 CYA_1392 CYA_1392 CYA_1392 1398863 1399594 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1392 CYA_1393 CYA_1393 CYA_1393 1397091 1398893 + TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1393 CYA_1394 CYA_1394 recO recO 1400048 1400953 - DNA repair protein RecO identified by match to protein family HMM PF02565%3B match to protein family HMM TIGR00613 gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1394 CYA_1395 CYA_1395 deoC deoC 1400950 1401651 - deoxyribose-phosphate aldolase identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126 gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1395 CYA_1396 CYA_1396 CYA_1396 1401835 1402206 + conserved hypothetical protein identified by similarity to GB:BAC08489.1 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1396 CYA_1397 CYA_1397 CYA_1397 1402203 1402730 + conserved hypothetical protein gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1397 CYA_1398 CYA_1398 metG metG 1402734 1404284 - methionyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM PF01406%3B match to protein family HMM TIGR00398 gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1398 CYA_1399 CYA_1399 CYA_1399 1404262 1406232 + conserved hypothetical protein gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1399 CYA_1400 CYA_1400 CYA_1400 1406262 1406588 + conserved hypothetical protein gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1400 CYA_1401 CYA_1401 CYA_1401 1406653 1407894 + conserved hypothetical protein identified by match to protein family HMM PF05673 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1401 CYA_1402 CYA_1402 CYA_1402 1407996 1408382 - conserved hypothetical protein gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1402 CYA_1403 CYA_1403 petC petC 1408487 1409005 + cytochrome b6-f complex%2C iron-sulfur subunit identified by similarity to SP:P26290%3B match to protein family HMM PF00355 gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1403 CYA_1404 CYA_1404 petA petA 1409483 1410466 + apocytochrome F identified by similarity to SP:P26287 gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1404 CYA_1405 CYA_1405 CYA_1405 1410528 1411340 - phenazine biosynthesis protein%2C PhzF family identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1405 CYA_1406 CYA_1406 groS groS 1411585 1411896 + chaperonin%2C 10 kDa identified by similarity to SP:O50322%3B match to protein family HMM PF00166 gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1406 CYA_1407 CYA_1407 groL-2 groL-2 1411963 1413597 + chaperonin GroEL identified by similarity to SP:P45746%3B match to protein family HMM PF00118%3B match to protein family HMM TIGR02348 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1407 CYA_1408 CYA_1408 CYA_1408 1413771 1414598 + conserved hypothetical protein identified by similarity to PIR:C70708 gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1408 CYA_1409 CYA_1409 CYA_1409 1414754 1415917 + IMP dehydrogenase family protein identified by match to protein family HMM PF00478%3B match to protein family HMM TIGR01304 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1409 CYA_1410 CYA_1410 CYA_1410 1415958 1416029 + tRNA-Val tRNA gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1410 CYA_1411 CYA_1411 CYA_1411 1416275 1417909 + S-layer domain protein identified by match to protein family HMM PF00395 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1411 CYA_1412 CYA_1412 CYA_1412 1418354 1419934 + putative S-layer protein identified by match to protein family HMM PF00395 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1412 CYA_1413 CYA_1413 CYA_1413 1420078 1420917 - conserved hypothetical protein gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1413 CYA_1414 CYA_1414 CYA_1414 1420985 1422682 - sulfate transporter%2C sulfate permease (SulP) family identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916%3B match to protein family HMM PF01740 gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1414 CYA_1415 CYA_1415 gyrA gyrA 1422999 1425539 + DNA gyrase%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063 gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1415 CYA_1416 CYA_1416 CYA_1416 1425730 1426125 + conserved hypothetical protein identified by similarity to GB:CAE19064.1 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1416 CYA_1417 CYA_1417 CYA_1417 1426263 1427396 + glycerate kinase identified by match to protein family HMM PF02595%3B match to protein family HMM TIGR00045 gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1417 CYA_1418 CYA_1418 psbW psbW 1427568 1427882 + photosystem II reaction center protein PsbW identified by similarity to SP:Q55356%3B match to protein family HMM PF03912 gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1418 CYA_1419 CYA_1419 gatA gatA 1427888 1429417 - glutamyl-tRNA(Gln) amidotransferase%2C A subunit identified by match to protein family HMM PF01425%3B match to protein family HMM TIGR00132 gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1419 CYA_1420 CYA_1420 CYA_1420 1429598 1429915 - hypothetical protein identified by Glimmer2%3B putative gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1420 CYA_1421 CYA_1421 CYA_1421 1430023 1430361 - hypothetical protein identified by Glimmer2%3B putative gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1421 CYA_1422 CYA_1422 CYA_1422 1430438 1430510 - tRNA-Ala tRNA gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1422 CYA_1423 CYA_1423 CYA_1423 1430501 1431175 - conserved hypothetical protein identified by similarity to PIR:AD2438%3B match to protein family HMM PF05685 gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1423 CYA_1424 CYA_1424 CYA_1424 1431242 1431622 - hypothetical protein identified by Glimmer2%3B putative gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1424 CYA_1425 CYA_1425 CYA_1425 1431698 1431787 - hypothetical protein identified by Glimmer2%3B putative gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1425 CYA_1426 CYA_1426 CYA_1426 1431851 1432150 - ferredoxin%2C 2Fe-2S identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02008 gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1426 CYA_1427 CYA_1427 CYA_1427 1432352 1432498 + hypothetical protein identified by Glimmer2%3B putative gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1427 CYA_1428 CYA_1428 CYA_1428 1432665 1434956 + putative lipoprotein gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1428 CYA_1429 CYA_1429 CYA_1429 1437306 1437467 - hypothetical protein identified by Glimmer2%3B putative gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1429 CYA_1430 CYA_1430 CYA_1430 1435208 1437325 + putative lipoprotein gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1430 CYA_1431 CYA_1431 CYA_1431 1437521 1438027 + pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1431 CYA_1432 CYA_1432 CYA_1432 1438097 1438597 + conserved domain protein gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1432 CYA_1433 CYA_1433 CYA_1433 1438736 1439401 + putative lipoprotein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1433 CYA_1434 CYA_1434 CYA_1434 1439403 1439495 + hypothetical protein identified by Glimmer2%3B putative gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1434 CYA_1435 CYA_1435 CYA_1435 1439922 1441664 + putative lipoprotein gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1435 CYA_1436 CYA_1436 CYA_1436 1441806 1443266 - peptidase%2C M8 (leishmanolysin) family gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1436 CYA_1437 CYA_1437 CYA_1437 1443425 1444693 + conserved hypothetical protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1437 CYA_1438 CYA_1438 CYA_1438 1445169 1446401 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1438 CYA_1439 CYA_1439 CYA_1439 1446256 1446849 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1439 CYA_1440 CYA_1440 CYA_1440 1446917 1447375 - ISSoc14%2C transposase%2C truncation gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1440 CYA_1441 CYA_1441 CYA_1441 1447464 1448585 - carbohydrate uptake ABC transporter-1 (CUT1) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1441 CYA_1442 CYA_1442 CYA_1442 1448815 1449255 - small heat shock protein (HSP20) family protein identified by similarity to SP:Q06823%3B match to protein family HMM PF00011 gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1442 CYA_1443 CYA_1443 CYA_1443 1449434 1449745 - conserved hypothetical protein identified by similarity to PIR:AI1993 gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1443 CYA_1444 CYA_1444 acnB acnB 1449821 1452454 - aconitate hydratase 2 identified by match to protein family HMM PF00330%3B match to protein family HMM PF06434%3B match to protein family HMM TIGR00117 gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1444 CYA_1445 CYA_1445 prfA prfA 1452529 1453614 - peptide chain release factor 1 identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019 gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1445 CYA_1446 CYA_1446 rpmE rpmE 1453685 1453906 - ribosomal protein L31 identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105 gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1446 CYA_1447 CYA_1447 rpsI rpsI 1453984 1454397 - ribosomal protein S9 identified by match to protein family HMM PF00380 gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1447 CYA_1448 CYA_1448 rplM rplM 1454394 1454849 - ribosomal protein L13 identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066 gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1448 CYA_1449 CYA_1449 truA truA 1454899 1455762 - tRNA pseudouridine synthase A identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071 gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1449 CYA_1450 CYA_1450 rplQ rplQ 1455768 1456118 - ribosomal protein L17 identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059 gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1450 CYA_1451 CYA_1451 rpoA rpoA 1456191 1457186 - DNA-directed RNA polymerase%2C alpha subunit identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1451 CYA_1452 CYA_1452 rpsK rpsK 1457309 1457695 - ribosomal protein S11 identified by match to protein family HMM PF00411 gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1452 CYA_1453 CYA_1453 rpsM rpsM 1457784 1458167 - ribosomal protein S13 identified by match to protein family HMM PF00416 gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1453 CYA_1454 CYA_1454 rpmJ rpmJ 1458381 1458497 - ribosomal protein L36 identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022 gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1454 CYA_1455 CYA_1455 CYA_1455 1458692 1460623 + conserved hypothetical protein identified by similarity to GB:BAC90967.1 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1455 CYA_1456 CYA_1456 CYA_1456 1460682 1461719 + conserved domain protein gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1456 CYA_1457 CYA_1457 CYA_1457 1461999 1463558 + dolichyl-phosphate-mannose-protein mannosyltransferase identified by match to protein family HMM PF02366 gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1457 CYA_1458 CYA_1458 CYA_1458 1463667 1464716 + oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1458 CYA_1459 CYA_1459 CYA_1459 1464769 1465722 + putative membrane protein identified by match to protein family HMM PF01925 gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1459 CYA_1460 CYA_1460 CYA_1460 1465840 1466739 - prephenate dehydratase identified by match to protein family HMM PF00800%3B match to protein family HMM PF01842 gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1460 CYA_1461 CYA_1461 CYA_1461 1466743 1467078 - competence protein identified by similarity to SP:P39146 gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1461 CYA_1462 CYA_1462 alr alr 1467548 1468837 - alanine racemase identified by similarity to SP:P54918%3B match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1462 CYA_1463 CYA_1463 sppA-2 sppA-2 1468878 1469918 - signal peptide peptidase SppA%2C 36K type identified by match to protein family HMM PF01343%3B match to protein family HMM TIGR00706 gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1463 CYA_1464 CYA_1464 CYA_1464 1470167 1470239 + tRNA-Ala tRNA gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1464 CYA_1465 CYA_1465 CYA_1465 1470893 1472410 + conserved domain protein gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1465 CYA_1466 CYA_1466 priA priA 1472452 1474845 + primosomal protein N' identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595 gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1466 CYA_1467 CYA_1467 CYA_1467 1475005 1476111 + isopropylmalate/isohomocitrate dehydrogenase family protein identified by match to protein family HMM PF00180 gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1467 CYA_1468 CYA_1468 CYA_1468 1476143 1477069 - D-isomer specific 2-hydroxyacid dehydrogenase family protein identified by match to protein family HMM PF02826 gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1468 CYA_1469 CYA_1469 CYA_1469 1477084 1477329 + hypothetical protein identified by Glimmer2%3B putative gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1469 CYA_1470 CYA_1470 CYA_1470 1477378 1478613 + conserved domain protein gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1470 CYA_1471 CYA_1471 CYA_1471 1478619 1479899 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1471 CYA_1472 CYA_1472 CYA_1472 1479754 1480371 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1472 CYA_1473 CYA_1473 CYA_1473 1481805 1482455 + putative cob(I)alamin adenosyltransferase gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1473 CYA_1474 CYA_1474 dcd dcd 1482540 1483133 + deoxycytidine triphosphate deaminase identified by match to protein family HMM TIGR02274 gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1474 CYA_1475 CYA_1475 CYA_1475 1484412 1485188 - hydrolase%2C haloacid dehalogenase family protein identified by match to protein family HMM PF00702 gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1475 CYA_1476 CYA_1476 queA queA 1483225 1484415 + S-adenosylmethionine:tRNA ribosyltransferase-isomerase identified by match to protein family HMM PF02547%3B match to protein family HMM TIGR00113 gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1476 CYA_1477 CYA_1477 CYA_1477 1485217 1486212 - oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1477 CYA_1478 CYA_1478 CYA_1478 1486245 1486910 + hypothetical protein identified by Glimmer2%3B putative gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1478 CYA_1479 CYA_1479 pyrG pyrG 1486962 1488596 + CTP synthase identified by similarity to SP:P13242%3B match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1479 CYA_1480 CYA_1480 CYA_1480 1488628 1488780 - conserved domain protein gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1480 CYA_1481 CYA_1481 CYA_1481 1488848 1489324 + conserved hypothetical protein gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1481 CYA_1482 CYA_1482 CYA_1482 1489545 1490024 + peptidylprolyl cis-trans isomerase%2C cyclophilin-type identified by match to protein family HMM PF00160 gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1482 CYA_1483 CYA_1483 gvpK gvpK 1490111 1491406 + HAD hydrolase-like protein/gas vesicle protein K identified by match to protein family HMM PF00702%3B match to protein family HMM PF00741 gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1483 CYA_1484 CYA_1484 CYA_1484 1491527 1493104 + NADH-ubiquinone/plastoquinone oxidoreductase%2C B subunit identified by similarity to SP:P29801%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01770 gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1484 CYA_1485 CYA_1485 ycf4 ycf4 1493271 1493840 - photosystem I assembly protein Ycf4 identified by match to protein family HMM PF02392 gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1485 CYA_1486 CYA_1486 CYA_1486 1494061 1495182 - S-layer domain protein identified by match to protein family HMM PF00395 gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1486 CYA_1487 CYA_1487 CYA_1487 1495170 1495484 - conserved hypothetical protein gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1487 CYA_1488 CYA_1488 CYA_1488 1495536 1496153 - hypothetical protein identified by Glimmer2%3B putative gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1488 CYA_1489 CYA_1489 CYA_1489 1496190 1496693 - conserved hypothetical protein identified by similarity to GB:BAC89679.1 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1489 CYA_1490 CYA_1490 CYA_1490 1496753 1497415 - RNA polymerase sigma-70 factor identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545 gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1490 CYA_1491 CYA_1491 CYA_1491 1497684 1498391 + cyclic nucleotide-binding protein identified by match to protein family HMM PF00027 gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1491 CYA_1492 CYA_1492 CYA_1492 1498421 1498915 + conserved hypothetical protein identified by similarity to GB:BAC90187.1%3B match to protein family HMM PF04248 gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1492 CYA_1493 CYA_1493 CYA_1493 1499032 1501002 + DnaJ domain protein identified by match to protein family HMM PF00226%3B match to protein family HMM PF07721 gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1493 CYA_1494 CYA_1494 CYA_1494 1501966 1504893 - sensor histidine kinase identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518 gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1494 CYA_1495 CYA_1495 CYA_1495 1501066 1502028 + putative transporter identified by match to protein family HMM PF02361 gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1495 CYA_1496 CYA_1496 CYA_1496 1505050 1505595 - NADPH-dependent FMN reductase identified by match to protein family HMM PF03358 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1496 CYA_1497 CYA_1497 CYA_1497 1505724 1508000 - membrane protein/conserved domain protein identified by similarity to GB:CAE28953.1 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1497 CYA_1498 CYA_1498 CYA_1498 1508120 1508881 - conserved hypothetical protein gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1498 CYA_1499 CYA_1499 CYA_1499 1508954 1509067 - hypothetical protein identified by Glimmer2%3B putative gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1499 CYA_1500 CYA_1500 fba fba 1509142 1510221 + fructose-bisphosphate aldolase%2C class II%2C Calvin cycle subtype identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01521 gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1500 CYA_1501 CYA_1501 CYA_1501 1510331 1510564 - hypothetical protein identified by Glimmer2%3B putative gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1501 CYA_1502 CYA_1502 CYA_1502 1510605 1510952 - hypothetical protein identified by Glimmer2%3B putative gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1502 CYA_1503 CYA_1503 CYA_1503 1511145 1511633 - SUF system FeS assembly protein%2C NifU family identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR01994 gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1503 CYA_1504 CYA_1504 cobM cobM 1511999 1512763 - precorrin-4 C11-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01465 gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1504 CYA_1505 CYA_1505 ispD ispD 1514374 1515081 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase identified by match to protein family HMM PF01128%3B match to protein family HMM TIGR00453 gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1505 CYA_1506 CYA_1506 CYA_1506 1512957 1514377 + transporter%2C multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) flippase family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1506 CYA_1507 CYA_1507 amt amt 1515231 1516637 - ammonium transporter identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836 gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1507 CYA_1508 CYA_1508 glnB glnB 1516789 1517127 - nitrogen regulatory protein P-II identified by similarity to SP:P80016%3B match to protein family HMM PF00543 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1508 CYA_1509 CYA_1509 CYA_1509 1517279 1518694 - putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein identified by match to protein family HMM PF04932 gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1509 CYA_1510 CYA_1510 CYA_1510 1518855 1519064 - hypothetical protein identified by Glimmer2%3B putative gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1510 CYA_1511 CYA_1511 holA holA 1519335 1520312 + DNA polymerase III%2C delta subunit identified by match to protein family HMM PF06144%3B match to protein family HMM TIGR01128 gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1511 CYA_1512 CYA_1512 ctaE ctaE 1520399 1521010 - cytochrome c oxidase%2C subunit III identified by similarity to SP:Q06475 gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1512 CYA_1513 CYA_1513 ctaD ctaD 1521127 1522836 - cytochrome c oxidase%2C subunit I identified by similarity to SP:Q06473%3B match to protein family HMM PF00115 gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1513 CYA_1514 CYA_1514 ctaC ctaC 1522833 1523861 - cytochrome c oxidase%2C subunit II identified by similarity to SP:P98054%3B match to protein family HMM PF00116%3B match to protein family HMM PF02790 gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1514 CYA_1515 CYA_1515 CYA_1515 1524408 1525343 + cytochrome oxidase assembly protein identified by match to protein family HMM PF02628 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1515 CYA_1516 CYA_1516 CYA_1516 1526161 1527009 - ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1516 CYA_1517 CYA_1517 cyoE cyoE 1525396 1526391 + protoheme IX farnesyltransferase identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01473 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1517 CYA_1518 CYA_1518 CYA_1518 1527847 1529391 + outer membrane efflux family protein identified by match to protein family HMM PF02321 gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1518 CYA_1519 CYA_1519 rpsD rpsD 1529634 1530245 - ribosomal protein S4 identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017 gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1519 CYA_1520 CYA_1520 gmd gmd 1530410 1531546 - GDP-mannose 4%2C6-dehydratase identified by match to protein family HMM PF01370%3B match to protein family HMM TIGR01472 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1520 CYA_1521 CYA_1521 CYA_1521 1531693 1533054 - putative nicotinate phosphoribosyltransferase identified by match to protein family HMM PF04095%3B match to protein family HMM TIGR01513 gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1521 CYA_1522 CYA_1522 CYA_1522 1533207 1534283 + conserved hypothetical protein identified by similarity to PIR:AB2451 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1522 CYA_1523 CYA_1523 gyrB gyrB 1535547 1537475 - DNA gyrase%2C B subunit identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059 gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1523 CYA_1524 CYA_1524 hisZ hisZ 1534364 1535596 + ATP phosphoribosyltransferase regulatory subunit identified by similarity to SP:Q55267%3B match to protein family HMM PF00587 gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1524 CYA_1525 CYA_1525 rimM rimM 1537657 1538217 - 16S rRNA processing protein RimM identified by match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273 gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1525 CYA_1526 CYA_1526 CYA_1526 1538229 1539197 - HflC/HflK family protein identified by match to protein family HMM PF01145 gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1526 CYA_1527 CYA_1527 CYA_1527 1539214 1539321 + hypothetical protein identified by Glimmer2%3B putative gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1527 CYA_1528 CYA_1528 CYA_1528 1539402 1540394 + pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF01266%3B match to protein family HMM PF07992 gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1528 CYA_1529 CYA_1529 CYA_1529 1540474 1541559 + polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1529 CYA_1530 CYA_1530 CYA_1530 1541632 1542297 + hypothetical protein identified by Glimmer2%3B putative gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1530 CYA_1531 CYA_1531 CYA_1531 1542429 1543451 - peptidase%2C M23B family identified by match to protein family HMM PF01551 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1531 CYA_1532 CYA_1532 CYA_1532 1543567 1544442 + putative membrane protein identified by match to protein family HMM PF04240 gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1532 CYA_1533 CYA_1533 lspA lspA 1544448 1544918 - signal peptidase II identified by match to protein family HMM PF01252%3B match to protein family HMM TIGR00077 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1533 CYA_1534 CYA_1534 CYA_1534 1545156 1545380 - hypothetical protein identified by Glimmer2%3B putative gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1534 CYA_1535 CYA_1535 cysC cysC 1545458 1545988 - adenylylsulfate kinase identified by match to protein family HMM PF01583%3B match to protein family HMM TIGR00455 gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1535 CYA_1536 CYA_1536 CYA_1536 1547332 1547745 - conserved domain protein gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1536 CYA_1537 CYA_1537 argD argD 1546079 1547335 + acetylornithine transaminase identified by similarity to SP:P54752%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00707 gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1537 CYA_1538 CYA_1538 CYA_1538 1547900 1548724 + creatininase identified by match to protein family HMM PF02633 gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1538 CYA_1539 CYA_1539 CYA_1539 1548851 1549513 + conserved hypothetical protein identified by match to protein family HMM PF05685 gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1539 CYA_1540 CYA_1540 CYA_1540 1549537 1550202 + conserved hypothetical protein identified by similarity to GB:BAC91077.1%3B match to protein family HMM PF05685 gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1540 CYA_1541 CYA_1541 CYA_1541 1550208 1550846 - transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00325 gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1541 CYA_1542 CYA_1542 atpC atpC 1551104 1551511 + ATP synthase F1%2C epsilon subunit identified by match to protein family HMM PF02823%3B match to protein family HMM TIGR01216 gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1542 CYA_1543 CYA_1543 glmS glmS 1552061 1553908 - glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135 gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1543 CYA_1544 CYA_1544 CYA_1544 1551633 1552100 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1544 CYA_1545 CYA_1545 CYA_1545 1553982 1555208 - mce related protein identified by match to protein family HMM PF02470 gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1545 CYA_1546 CYA_1546 CYA_1546 1555208 1555945 - ABC transporter%2C ATP-binding protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to PIR:AD1829%3B match to protein family HMM PF00005 pseudogene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1546 CYA_1547 CYA_1547 CYA_1547 1556256 1557062 - membrane protein%2C TerC family identified by match to protein family HMM PF03741 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1547 CYA_1548 CYA_1548 CYA_1548 1557330 1558139 - circadian phase modifier CpmA-like protein identified by similarity to GB:AAD29318.1 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1548 CYA_1549 CYA_1549 CYA_1549 1558160 1559056 - universal stress protein family identified by match to protein family HMM PF00582 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1549 CYA_1550 CYA_1550 dnaB dnaB 1559184 1560959 - replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665%3B match to protein family HMM TIGR01443%3B match to protein family HMM TIGR01445 gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1550 CYA_1551 CYA_1551 rplI rplI 1561070 1561531 - ribosomal protein L9 identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1551 CYA_1552 CYA_1552 pstS-2 pstS-2 1561867 1562946 + phosphate ABC transporter%2C phosphate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR00975%3B match to protein family HMM TIGR01409 gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1552 CYA_1553 CYA_1553 pstC-1 pstC-1 1562971 1563939 + phosphate ABC transporter%2C permease protein PstC identified by similarity to SP:P07653%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02138 gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1553 CYA_1554 CYA_1554 pstA-1 pstA-1 1563946 1564845 + phosphate ABC transporter%2C permease protein PtsA identified by similarity to SP:P07654%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1554 CYA_1555 CYA_1555 pstB-1 pstB-1 1564882 1565709 + phosphate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972 gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1555 CYA_1556 CYA_1556 CYA_1556 1565775 1566602 + hemolysin A identified by match to protein family HMM PF01479%3B match to protein family HMM PF01728%3B match to protein family HMM TIGR00478 gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1556 CYA_1557 CYA_1557 CYA_1557 1566646 1567080 + TPR-repeat protein identified by match to protein family HMM PF07719 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1557 CYA_1558 CYA_1558 CYA_1558 1567349 1567552 + conserved hypothetical protein gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1558 CYA_1559 CYA_1559 sat sat 1567851 1569032 - sulfate adenylyltransferase identified by match to protein family HMM PF01747%3B match to protein family HMM TIGR00339 gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1559 CYA_1560 CYA_1560 CYA_1560 1569146 1569517 - hypothetical protein identified by Glimmer2%3B putative gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1560 CYA_1561 CYA_1561 CYA_1561 1569646 1570428 - putative chromosome partitioning protein ParA identified by match to protein family HMM PF01656 gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1561 CYA_1562 CYA_1562 glgC glgC 1570546 1571832 + glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02091 gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1562 CYA_1563 CYA_1563 CYA_1563 1571985 1573757 + ABC1 domain protein identified by match to protein family HMM PF03109 gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1563 CYA_1564 CYA_1564 CYA_1564 1573800 1574174 + conserved hypothetical protein gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1564 CYA_1565 CYA_1565 CYA_1565 1574337 1574666 + conserved hypothetical protein identified by similarity to GB:BAC08086.1%3B match to protein family HMM PF02325 gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1565 CYA_1566 CYA_1566 CYA_1566 1576088 1577257 - conserved hypothetical protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1566 CYA_1567 CYA_1567 CYA_1567 1574742 1576091 + amidohydrolase family protein identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969 gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1567 CYA_1568 CYA_1568 CYA_1568 1577385 1577690 + hypothetical protein identified by Glimmer2%3B putative gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1568 CYA_1569 CYA_1569 thiE thiE 1577759 1578805 + thiamine-phosphate pyrophosphorylase identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00693 gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1569 CYA_1570 CYA_1570 CYA_1570 1578942 1580483 + ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1570 CYA_1571 CYA_1571 CYA_1571 1580613 1582763 + oxidoreductase%2C FAD-binding identified by match to protein family HMM PF01266 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1571 CYA_1572 CYA_1572 CYA_1572 1583158 1583496 + conserved hypothetical protein gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1572 CYA_1573 CYA_1573 CYA_1573 1583545 1583886 + histidine triad family protein identified by match to protein family HMM PF01230 gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1573 CYA_1574 CYA_1574 cobH-2 cobH-2 1583968 1584618 + precorrin-8X methylmutase identified by similarity to GB:CAA04310.1%3B match to protein family HMM PF02570 gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1574 CYA_1575 CYA_1575 CYA_1575 1584648 1585166 + hypothetical protein identified by Glimmer2%3B putative gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1575 CYA_1576 CYA_1576 CYA_1576 1585247 1586977 - putative diflavin flavoprotein identified by similarity to SP:Q8DJY2%3B match to protein family HMM PF00258%3B match to protein family HMM PF00753%3B match to protein family HMM PF01613 gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1576 CYA_1577 CYA_1577 CYA_1577 1587092 1588858 - GTP-binding protein identified by match to protein family HMM PF01926 gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1577 CYA_1578 CYA_1578 CYA_1578 1588905 1589078 - hypothetical protein identified by Glimmer2%3B putative gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1578 CYA_1579 CYA_1579 CYA_1579 1589130 1589561 - hypothetical protein identified by Glimmer2%3B putative gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1579 CYA_1580 CYA_1580 CYA_1580 1589713 1589835 - hypothetical protein identified by Glimmer2%3B putative gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1580 CYA_1581 CYA_1581 CYA_1581 1589902 1590858 - carbohydrate ABC transporter-2 (CUT2) family%2C permease protein identified by match to protein family HMM PF02653 gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1581 CYA_1582 CYA_1582 CYA_1582 1590865 1591914 - carbohydrate ABC transporter-2 (CUT2) family%2C permease protein identified by match to protein family HMM PF02653 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1582 CYA_1583 CYA_1583 CYA_1583 1591904 1593466 - carbohydrate uptake ABC transporter 2 (CUT2) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1583 CYA_1584 CYA_1584 CYA_1584 1593438 1594466 - Tat (twin-arginine translocation) pathway signal sequence/basic membrane protein identified by match to protein family HMM PF02608%3B match to protein family HMM TIGR01409 gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1584 CYA_1585 CYA_1585 CYA_1585 1594890 1596107 + ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1585 CYA_1586 CYA_1586 CYA_1586 1597436 1597876 - conserved hypothetical protein gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1586 CYA_1587 CYA_1587 codA codA 1596165 1597439 + cytosine deaminase identified by similarity to SP:P25524%3B match to protein family HMM PF01979%3B match to protein family HMM PF07969 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1587 CYA_1588 CYA_1588 CYA_1588 1597902 1598534 - 5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727 gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1588 CYA_1589 CYA_1589 CYA_1589 1598579 1599034 - peptidyl-prolyl cis-trans isomerase%2C FKBP-type identified by similarity to SP:P25138%3B match to protein family HMM PF00254 gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1589 CYA_1590 CYA_1590 CYA_1590 1599102 1599743 - conserved hypothetical protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1590 CYA_1591 CYA_1591 cbiG/cobJ-1 cbiG/cobJ-1 1599799 1601667 + cbiG protein/precorrin-3B C17-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM PF01890%3B match to protein family HMM TIGR01466%3B match to protein family HMM TIGR02467 gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1591 CYA_1592 CYA_1592 CYA_1592 1601699 1601950 - conserved hypothetical protein gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1592 CYA_1593 CYA_1593 CYA_1593 1602098 1603957 + NAD(P)H dehydrogenase%2C subunit NdhF3 family identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01960 gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1593 CYA_1594 CYA_1594 CYA_1594 1603971 1605488 + NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 4 family identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1594 CYA_1595 CYA_1595 CYA_1595 1605542 1606801 + CO2 hydration protein identified by match to protein family HMM TIGR01964 gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1595 CYA_1596 CYA_1596 CYA_1596 1607074 1607145 + tRNA-Cys tRNA gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1596 CYA_1597 CYA_1597 CYA_1597 1607176 1608336 + putative soluble hydrogenase%2C tritium exchange subunit identified by similarity to SP:P14776%3B match to protein family HMM PF00266 gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1597 CYA_1598 CYA_1598 CYA_1598 1608479 1609147 + PHP domain protein identified by match to protein family HMM PF02811 gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1598 CYA_1599 CYA_1599 CYA_1599 1609166 1610215 - potassium transporter%2C voltage-gated ion channel (VIC) family identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254%3B match to protein family HMM PF07885 gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1599 CYA_1600 CYA_1600 CYA_1600 1610304 1610516 + conserved hypothetical protein identified by similarity to GB:BAC91745.1 gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1600 CYA_1601 CYA_1601 CYA_1601 1610556 1610786 - conserved hypothetical protein gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1601 CYA_1602 CYA_1602 petE petE 1610938 1611348 - plastocyanin identified by similarity to SP:Q51883%3B match to protein family HMM PF00127%3B match to protein family HMM TIGR02656 gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1602 CYA_1603 CYA_1603 CYA_1603 1611594 1611716 - mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1603 CYA_1604 CYA_1604 CYA_1604 1612112 1613059 + ISSoc4%2C transposase orfAB identified by similarity to GB:AAC97588.1 gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1604 CYA_1605 CYA_1605 CYA_1605 1613457 1613624 - conserved hypothetical protein identified by similarity to PIR:AB2208 gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1605 CYA_1606 CYA_1606 CYA_1606 1614027 1614413 + conserved hypothetical protein identified by similarity to GB:BAC08441.1 gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1606 CYA_1607 CYA_1607 CYA_1607 1614468 1614686 + conserved hypothetical protein identified by similarity to GB:BAC91485.1 gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1607 CYA_1608 CYA_1608 CYA_1608 1614729 1615568 + conserved hypothetical protein gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1608 CYA_1609 CYA_1609 CYA_1609 1615590 1616315 + putative cobalt ABC transporter (CoT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1609 CYA_1610 CYA_1610 CYA_1610 1616391 1616552 + hypothetical protein identified by Glimmer2%3B putative gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1610 CYA_1611 CYA_1611 ccmK-1 ccmK-1 1616847 1617155 + carbon dioxide concentrating mechanism protein CcmK identified by similarity to SP:Q03511%3B match to protein family HMM PF00936 gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1611 CYA_1612 CYA_1612 ccmK-2 ccmK-2 1617247 1617588 + carbon dioxide concentrating mechanism protein CcmK identified by similarity to SP:Q03511%3B match to protein family HMM PF00936 gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1612 CYA_1613 CYA_1613 ccmL ccmL 1617589 1617888 + carbon dioxide concentrating mechanism protein CcmL identified by similarity to SP:P72759%3B match to protein family HMM PF03319 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1613 CYA_1614 CYA_1614 ccmM ccmM 1617937 1619901 + carbon dioxide concentrating mechanism protein CcmM identified by similarity to SP:Q03513 gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1614 CYA_1615 CYA_1615 CYA_1615 1619982 1620671 + conserved hypothetical protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1615 CYA_1616 CYA_1616 CYA_1616 1620703 1621419 + bacterial microcompartments family protein identified by match to protein family HMM PF00936 gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1616 CYA_1617 CYA_1617 CYA_1617 1621688 1622101 + hypothetical protein identified by Glimmer2%3B putative gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1617 CYA_1618 CYA_1618 CYA_1618 1622360 1622435 - tRNA-Trp tRNA gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1618 CYA_1619 CYA_1619 rplS rplS 1622498 1622881 - ribosomal protein L19 identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1619 CYA_1620 CYA_1620 CYA_1620 1623053 1624450 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01167%3B match to protein family HMM TIGR01730 gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1620 CYA_1621 CYA_1621 macB macB 1624447 1625658 + macrolide ABC transporter%2C permease protein identified by similarity to SP:P75831%3B match to protein family HMM PF02687 gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1621 CYA_1622 CYA_1622 thrB thrB 1625731 1626651 + homoserine kinase identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00191 gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1622 CYA_1623 CYA_1623 dgkA dgkA 1626880 1627374 - diacylglycerol kinase identified by match to protein family HMM PF01219 gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1623 CYA_1624 CYA_1624 CYA_1624 1627406 1628002 - conserved hypothetical protein identified by similarity to SP:Q8Z032%3B match to protein family HMM PF02130%3B match to protein family HMM TIGR00043 gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1624 CYA_1625 CYA_1625 eda eda 1628283 1629023 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1625 CYA_1626 CYA_1626 CYA_1626 1630962 1631612 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1626 CYA_1627 CYA_1627 CYA_1627 1629793 1630971 + peptidase%2C M23B family identified by match to protein family HMM PF01551 gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1627 CYA_1628 CYA_1628 CYA_1628 1631671 1631919 - conserved hypothetical protein identified by similarity to GB:BAC90997.1 gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1628 CYA_1629 CYA_1629 CYA_1629 1632071 1632571 + low molecular weight phosphotyrosine protein phosphatase family protein identified by match to protein family HMM PF01451 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1629 CYA_1630 CYA_1630 CYA_1630 1632594 1632902 - NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 4L family identified by match to protein family HMM PF00420 gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1630 CYA_1631 CYA_1631 CYA_1631 1632979 1633587 - NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 6 identified by match to protein family HMM PF00499 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1631 CYA_1632 CYA_1632 CYA_1632 1633707 1634978 - conserved hypothetical protein identified by similarity to GB:CAD84826.1%3B match to protein family HMM PF04536 gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1632 CYA_1633 CYA_1633 CYA_1633 1635202 1635933 - biotin/lipoate A/B protein ligase family protein identified by match to protein family HMM PF03099 gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1633 CYA_1634 CYA_1634 CYA_1634 1635933 1636400 - conserved hypothetical protein identified by similarity to PIR:AB2051 gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1634 CYA_1635 CYA_1635 CYA_1635 1636509 1636872 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1635 CYA_1636 CYA_1636 mtnN mtnN 1636901 1637653 + MTA/SAH nucleosidase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704 gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1636 CYA_1637 CYA_1637 CYA_1637 1638093 1638166 - tRNA-Pro tRNA gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1637 CYA_1638 CYA_1638 rpsB rpsB 1638377 1639180 + ribosomal protein S2 identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011 gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1638 CYA_1639 CYA_1639 tsf tsf 1639356 1640204 + translation elongation factor Ts identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116 gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1639 CYA_1640 CYA_1640 CYA_1640 1640411 1641823 + amidohydrolase family protein identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969 gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1640 CYA_1641 CYA_1641 CYA_1641 1641847 1642875 + putative iron-sulfur cluster binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00276 gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1641 CYA_1642 CYA_1642 CYA_1642 1642886 1643128 - putative transposase%2C truncation identified by match to protein family HMM PF07282 gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1642 CYA_1643 CYA_1643 CYA_1643 1643344 1643526 + hypothetical protein identified by Glimmer2%3B putative gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1643 CYA_1644 CYA_1644 CYA_1644 1643523 1644335 + conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1644 CYA_1645 CYA_1645 CYA_1645 1644320 1644937 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1645 CYA_1646 CYA_1646 CYA_1646 1644792 1646072 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1646 CYA_1647 CYA_1647 dnaN dnaN 1646277 1647641 - DNA polymerase III%2C beta subunit identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663 gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1647 CYA_1648 CYA_1648 CYA_1648 1646050 1646280 + conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to GB:BAC88438.1 pseudogene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1648 CYA_1649 CYA_1649 CYA_1649 1648111 1648440 + hypothetical protein identified by Glimmer2%3B putative gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1649 CYA_1650 CYA_1650 CYA_1650 1648460 1649500 - dihydrouridine synthase family protein identified by match to protein family HMM PF00724%3B match to protein family HMM PF01207%3B match to protein family HMM TIGR00737 gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1650 CYA_1651 CYA_1651 rpsR rpsR 1649564 1649779 - ribosomal protein S18 identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165 gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1651 CYA_1652 CYA_1652 rpmG rpmG 1649809 1650003 - ribosomal protein L33 identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023 gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1652 CYA_1653 CYA_1653 CYA_1653 1650093 1650863 - RDD family protein identified by match to protein family HMM PF06271 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1653 CYA_1654 CYA_1654 rnz rnz 1650995 1651969 - ribonuclease Z identified by similarity to SP:P54548%3B match to protein family HMM PF00753%3B match to protein family HMM TIGR02651 gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1654 CYA_1655 CYA_1655 CYA_1655 1652092 1652448 + iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1655 CYA_1656 CYA_1656 CYA_1656 1652449 1653678 - sensor histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1656 CYA_1657 CYA_1657 CYA_1657 1653665 1658044 - sensory box histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1657 CYA_1658 CYA_1658 CYA_1658 1658286 1661042 - calcium-translocating P-type ATPase%2C PMCA-type identified by match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01517 gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1658 CYA_1659 CYA_1659 CYA_1659 1661167 1662945 + putative diflavin flavoprotein identified by similarity to SP:P74373%3B match to protein family HMM PF00258%3B match to protein family HMM PF00753%3B match to protein family HMM PF01613 gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1659 CYA_1660 CYA_1660 CYA_1660 1662980 1663897 + conserved domain protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1660 CYA_1661 CYA_1661 CYA_1661 1663936 1664334 + ISSoc4%2C transposase orfA identified by similarity to GB:AAC97588.1 gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1661 CYA_1662 CYA_1662 CYA_1662 1664316 1664882 + ISSoc4%2C transposase orfB identified by similarity to GB:AAC97588.1 gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1662 CYA_1663 CYA_1663 CYA_1663 1665244 1666608 + phosphoglycerate mutase family protein identified by match to protein family HMM PF00300 gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1663 CYA_1664 CYA_1664 CYA_1664 1666620 1667954 + putative dihydroorotase identified by match to protein family HMM PF01979 gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1664 CYA_1665 CYA_1665 CYA_1665 1668088 1669062 + YihY family protein identified by match to protein family HMM PF03631%3B match to protein family HMM TIGR00765 gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1665 CYA_1666 CYA_1666 CYA_1666 1669031 1670131 + Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM PF03481%3B match to protein family HMM TIGR00057 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1666 CYA_1667 CYA_1667 purE purE 1670101 1670631 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1667 CYA_1668 CYA_1668 CYA_1668 1670799 1671482 + conserved hypothetical protein identified by similarity to GB:BAD78557.1 gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1668 CYA_1669 CYA_1669 CYA_1669 1671618 1672607 + putative cobalamin biosynthesis protein CobW identified by match to protein family HMM PF02492%3B match to protein family HMM PF07683 gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1669 CYA_1670 CYA_1670 CYA_1670 1672706 1673014 + hypothetical protein identified by Glimmer2%3B putative gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1670 CYA_1671 CYA_1671 CYA_1671 1673208 1673291 - hypothetical protein identified by Glimmer2%3B putative gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1671 CYA_1672 CYA_1672 CYA_1672 1673017 1673238 + hypothetical protein identified by Glimmer2%3B putative gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1672 CYA_1673 CYA_1673 guaA guaA 1673291 1674907 - GMP synthase%2C glutamine-hydrolyzing identified by similarity to SP:P49057%3B match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1673 CYA_1674 CYA_1674 CYA_1674 1675216 1676220 + hypothetical protein identified by Glimmer2%3B putative gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1674 CYA_1675 CYA_1675 gidB gidB 1676217 1676999 + methyltransferase GidB identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138 gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1675 CYA_1676 CYA_1676 CYA_1676 1677020 1677130 - hypothetical protein identified by Glimmer2%3B putative gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1676 CYA_1677 CYA_1677 CYA_1677 1677194 1677484 + putative RNA-binding protein identified by match to protein family HMM PF00076 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1677 CYA_1678 CYA_1678 CYA_1678 1677524 1678357 - manganese/zinc/iron chelate ABC transporter (MZT) family%2C permease protein identified by similarity to GB:AAD56938.1%3B match to protein family HMM PF00950 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1678 CYA_1679 CYA_1679 CYA_1679 1678373 1679128 - manganese/zinc/iron chelate ABC transporter (MZT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1679 CYA_1680 CYA_1680 CYA_1680 1679191 1680126 + cation ABC transporter%2C cation-binding protein identified by similarity to SP:P31305%3B match to protein family HMM PF01297 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1680 CYA_1681 CYA_1681 aspS aspS 1680199 1682004 + aspartyl-tRNA synthetase identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459 gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1681 CYA_1682 CYA_1682 CYA_1682 1682064 1682840 + enoyl-[acyl-carrier-protein] reductase identified by similarity to SP:P54616%3B match to protein family HMM PF00106 gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1682 CYA_1683 CYA_1683 CYA_1683 1682862 1683998 + putative membrane protein identified by match to protein family HMM PF01594 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1683 CYA_1684 CYA_1684 CYA_1684 1684079 1684966 - conserved hypothetical protein gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1684 CYA_1685 CYA_1685 CYA_1685 1684963 1685463 - hypothetical protein identified by Glimmer2%3B putative gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1685 CYA_1686 CYA_1686 CYA_1686 1685534 1686058 - putative cytochrome identified by similarity to SP:Q9F1L9 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1686 CYA_1687 CYA_1687 CYA_1687 1686058 1686594 - cytochrome c550 identified by similarity to SP:P56150 gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1687 CYA_1688 CYA_1688 CYA_1688 1686986 1688047 + conserved domain protein identified by similarity to GB:BAC07614.1 gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1688 CYA_1689 CYA_1689 CYA_1689 1688040 1689731 + dolichyl-phosphate-mannose-protein mannosyltransferase identified by match to protein family HMM PF02366 gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1689 CYA_1690 CYA_1690 radC radC 1689739 1690470 + DNA repair protein RadC identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1690 CYA_1691 CYA_1691 fmt fmt 1690555 1691523 - methionyl-tRNA formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1691 CYA_1692 CYA_1692 CYA_1692 1691548 1692159 - conserved domain protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1692 CYA_1693 CYA_1693 mgtE-2 mgtE-2 1692332 1693732 - magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400 gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1693 CYA_1694 CYA_1694 CYA_1694 1694021 1695745 - iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037 gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1694 CYA_1695 CYA_1695 CYA_1695 1696037 1697485 + putative membrane protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1695 CYA_1696 CYA_1696 CYA_1696 1697729 1699789 + conserved hypothetical protein identified by similarity to PIR:H83315%3B match to protein family HMM PF05787 gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1696 CYA_1697 CYA_1697 ilvD ilvD 1699913 1701610 - dihydroxy-acid dehydratase identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR00110 gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1697 CYA_1698 CYA_1698 fbp fbp 1701867 1702865 + fructose-1%2C6-bisphosphatase identified by match to protein family HMM PF00316 gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1698 CYA_1699 CYA_1699 zwf zwf 1702907 1704457 + glucose-6-phosphate 1-dehydrogenase identified by match to protein family HMM PF00479%3B match to protein family HMM PF02781%3B match to protein family HMM TIGR00871 gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1699 CYA_1700 CYA_1700 CYA_1700 1704610 1705548 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1700 CYA_1701 CYA_1701 dxs dxs 1705551 1707500 - 1-deoxy-D-xylulose-5-phosphate synthase identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204 gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1701 CYA_1702 CYA_1702 cysK cysK 1708008 1708988 + cysteine synthase A identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139 gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1702 CYA_1703 CYA_1703 ileS ileS 1709018 1711828 - isoleucyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM PF06827%3B match to protein family HMM TIGR00392 gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1703 CYA_1704 CYA_1704 CYA_1704 1712348 1713088 - conserved hypothetical protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1704 CYA_1705 CYA_1705 CYA_1705 1713324 1713767 + rhodanese domain protein identified by match to protein family HMM PF00581 gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1705 CYA_1706 CYA_1706 CYA_1706 1713944 1715746 + peptidase%2C M24B family identified by match to protein family HMM PF00557 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1706 CYA_1707 CYA_1707 CYA_1707 1715835 1716260 + conserved hypothetical protein gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1707 CYA_1708 CYA_1708 CYA_1708 1716591 1717571 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF07787 pseudogene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1708 CYA_1709 CYA_1709 CYA_1709 1717994 1719319 - aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1709 CYA_1710 CYA_1710 CYA_1710 1719052 1720002 - putative membrane protein gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1710 CYA_1711 CYA_1711 CYA_1711 1720146 1720778 - hypothetical protein identified by Glimmer2%3B putative gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1711 CYA_1712 CYA_1712 pyrF pyrF 1720790 1721488 - orotidine 5'-phosphate decarboxylase identified by match to protein family HMM PF00215%3B match to protein family HMM TIGR01740 gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1712 CYA_1713 CYA_1713 CYA_1713 1721509 1722021 - hypothetical protein identified by Glimmer2%3B putative gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1713 CYA_1714 CYA_1714 CYA_1714 1721996 1722337 - hypothetical protein identified by Glimmer2%3B putative gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1714 CYA_1715 CYA_1715 CYA_1715 1722402 1723214 - conserved hypothetical protein TIGR00726 identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1715 CYA_1716 CYA_1716 CYA_1716 1723211 1723624 - conserved hypothetical protein identified by similarity to GB:BAC08662.1 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1716 CYA_1717 CYA_1717 CYA_1717 1723769 1724923 + transporter%2C arsenical resistance-3 (ACR3) family identified by match to protein family HMM PF01758%3B match to protein family HMM TIGR00832 gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1717 CYA_1718 CYA_1718 CYA_1718 1725323 1725685 - transcriptional regulator%2C ArsR family identified by match to protein family HMM PF01022 gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1718 CYA_1719 CYA_1719 CYA_1719 1724940 1725356 + conserved hypothetical protein identified by similarity to PIR:AC2156%3B match to protein family HMM PF02656 gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1719 CYA_1720 CYA_1720 CYA_1720 1725843 1726559 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1720 CYA_1721 CYA_1721 CYA_1721 1726657 1727124 + conserved hypothetical protein identified by match to protein family HMM PF01724 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1721 CYA_1722 CYA_1722 CYA_1722 1727144 1727725 + rhodanese domain protein identified by match to protein family HMM PF00581 gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1722 CYA_1723 CYA_1723 CYA_1723 1729478 1730680 - conserved hypothetical protein identified by similarity to GB:BAC10028.1 gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1723 CYA_1724 CYA_1724 sulP sulP 1727722 1729503 + sulfate permease identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00815 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1724 CYA_1725 CYA_1725 trx-2 trx-2 1730944 1731276 + thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1725 CYA_1726 CYA_1726 CYA_1726 1732069 1732401 - tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1726 CYA_1727 CYA_1727 lipB lipB 1731290 1732072 + lipoate-protein ligase B identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00214 gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1727 CYA_1728 CYA_1728 CYA_1728 1732498 1733079 - conserved hypothetical protein identified by similarity to GB:BAD70760.1%3B match to protein family HMM PF05685 gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1728 CYA_1729 CYA_1729 purB purB 1733213 1734508 + adenylosuccinate lyase identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00928 gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1729 CYA_1730 CYA_1730 pyrB pyrB 1734518 1735498 + aspartate carbamoyltransferase identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670 gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1730 CYA_1731 CYA_1731 CYA_1731 1735747 1735908 - hypothetical protein identified by Glimmer2%3B putative gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1731 CYA_1732 CYA_1732 pstS-3 pstS-3 1736016 1737077 + phosphate ABC transporter%2C phosphate-binding protein identified by similarity to SP:P06128%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR00975 gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1732 CYA_1733 CYA_1733 pstC-2 pstC-2 1737226 1738209 + phosphate ABC transporter%2C permease protein PstC identified by similarity to SP:P07653%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02138 gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1733 CYA_1734 CYA_1734 pstA-2 pstA-2 1738248 1739141 + phosphate ABC transporter%2C permease protein PtsA identified by similarity to SP:P07654%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1734 CYA_1735 CYA_1735 pstB-2 pstB-2 1739212 1740009 + phosphate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972 gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1735 CYA_1736 CYA_1736 CYA_1736 1740122 1741489 + FAD-binding protein identified by match to protein family HMM PF01565 gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1736 CYA_1737 CYA_1737 CYA_1737 1741648 1742082 - conserved hypothetical protein identified by match to protein family HMM PF01724 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1737 CYA_1738 CYA_1738 CYA_1738 1742438 1743493 - putative permease identified by match to protein family HMM PF03773 gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1738 CYA_1739 CYA_1739 CYA_1739 1743572 1744708 - 2-methylcitrate synthase/citrate synthase II identified by match to protein family HMM PF00285%3B match to protein family HMM TIGR01800 gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1739 CYA_1740 CYA_1740 CYA_1740 1744902 1745444 - conserved hypothetical protein identified by similarity to PIR:AI2373%3B match to protein family HMM PF05991 gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1740 CYA_1741 CYA_1741 CYA_1741 1745846 1747699 + ABC1 domain protein identified by match to protein family HMM PF03109 gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1741 CYA_1742 CYA_1742 CYA_1742 1747942 1748325 - conserved hypothetical protein gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1742 CYA_1743 CYA_1743 CYA_1743 1748697 1749167 - conserved hypothetical protein identified by similarity to GB:BAC88789.1 gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1743 CYA_1744 CYA_1744 CYA_1744 1749395 1749670 + conserved hypothetical protein identified by similarity to GB:BAC09035.1%3B match to protein family HMM PF05421 gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1744 CYA_1745 CYA_1745 CYA_1745 1749682 1749852 + light-independent protochlorophyllide reductase%2C B subunit%2C truncation gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1745 CYA_1746 CYA_1746 CYA_1746 1749936 1751471 + peptidase%2C M50B family identified by match to protein family HMM PF02163 gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1746 CYA_1747 CYA_1747 CYA_1747 1751516 1753342 + aspartate kinase identified by similarity to SP:P41403%3B match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00657 gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1747 CYA_1748 CYA_1748 psbA-2 psbA-2 1753541 1754599 - photosystem II protein D1 identified by match to protein family HMM PF00124%3B match to protein family HMM TIGR01151 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1748 CYA_1749 CYA_1749 carB carB 1754923 1758147 - carbamoyl-phosphate synthase%2C large subunit identified by match to protein family HMM PF00289%3B match to protein family HMM PF02142%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369 gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1749 CYA_1750 CYA_1750 CYA_1750 1758557 1759216 - transporter%2C cation:proton antiporter family identified by match to protein family HMM PF04039 gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1750 CYA_1751 CYA_1751 CYA_1751 1759213 1759734 - conserved hypothetical protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1751 CYA_1752 CYA_1752 CYA_1752 1759744 1760025 - conserved hypothetical protein gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1752 CYA_1753 CYA_1753 CYA_1753 1760037 1760288 - conserved hypothetical protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1753 CYA_1754 CYA_1754 CYA_1754 1760285 1760671 - conserved hypothetical protein gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1754 CYA_1755 CYA_1755 CYA_1755 1760673 1762163 - NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361 gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1755 CYA_1756 CYA_1756 CYA_1756 1762156 1762494 - NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 4L family identified by match to protein family HMM PF00420 gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1756 CYA_1757 CYA_1757 CYA_1757 1762664 1763645 + ISSoc1%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM TIGR01766 pseudogene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1757 CYA_1758 CYA_1758 CYA_1758 1764135 1764590 + transcriptional regulator%2C MarR family identified by match to protein family HMM PF01047 gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1758 CYA_1759 CYA_1759 CYA_1759 1764600 1764986 - hypothetical protein identified by Glimmer2%3B putative gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1759 CYA_1760 CYA_1760 CYA_1760 1765417 1765914 + TM2 domain protein identified by match to protein family HMM PF05154 gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1760 CYA_1761 CYA_1761 CYA_1761 1765922 1766704 - putative ABC-2 type transporter%2C permease protein identified by match to protein family HMM PF01061 gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1761 CYA_1762 CYA_1762 CYA_1762 1766701 1767636 - drug exporter-1 ABC transporter (DrugE1) family%2C ATP-binding protein identified by similarity to SP:P32010%3B match to protein family HMM PF00005 gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1762 CYA_1763 CYA_1763 mfd mfd 1767740 1771210 - transcription-repair coupling factor identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580 gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1763 CYA_1764 CYA_1764 cydA cydA 1771687 1773120 + cytochrome d ubiquinol oxidase%2C subunit I identified by similarity to SP:P11026%3B match to protein family HMM PF01654 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1764 CYA_1765 CYA_1765 CYA_1765 1774248 1774364 - hypothetical protein identified by Glimmer2%3B putative gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1765 CYA_1766 CYA_1766 cydB cydB 1773202 1774251 + cytochrome d ubiquinol oxidase%2C subunit II identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1766 CYA_1767 CYA_1767 CYA_1767 1774361 1776115 - putative membrane protein identified by match to protein family HMM PF05552 gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1767 CYA_1768 CYA_1768 rimI rimI 1776482 1777009 - ribosomal-protein-alanine acetyltransferase identified by match to protein family HMM PF00583 gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1768 CYA_1769 CYA_1769 CYA_1769 1777016 1777441 - hypothetical protein identified by Glimmer2%3B putative gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1769 CYA_1770 CYA_1770 purK purK 1777438 1778568 - phosphoribosylaminoimidazole carboxylase%2C ATPase subunit identified by match to protein family HMM PF02222%3B match to protein family HMM TIGR01161 gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1770 CYA_1771 CYA_1771 CYA_1771 1778635 1778847 + hypothetical protein identified by Glimmer2%3B putative gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1771 CYA_1772 CYA_1772 CYA_1772 1778902 1779495 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1772 CYA_1773 CYA_1773 CYA_1773 1779350 1780630 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1773 CYA_1774 CYA_1774 CYA_1774 1780608 1781207 + hypothetical protein identified by Glimmer2%3B putative gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1774 CYA_1775 CYA_1775 trmD trmD 1781213 1781974 + tRNA (guanine-N1)-methyltransferase identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1775 CYA_1776 CYA_1776 CYA_1776 1781965 1782318 + hypothetical protein identified by Glimmer2%3B putative gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1776 CYA_1777 CYA_1777 secE secE 1782420 1782686 + preprotein translocase%2C SecE subunit identified by match to protein family HMM PF00584%3B match to protein family HMM TIGR00964 gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1777 CYA_1778 CYA_1778 nusG nusG 1782770 1783441 + transcription termination/antitermination factor NusG identified by similarity to SP:P36264%3B match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922 gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1778 CYA_1779 CYA_1779 rplK rplK 1783451 1783876 + ribosomal protein L11 identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1779 CYA_1780 CYA_1780 rplA rplA 1783976 1784686 + ribosomal protein L1 identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1780 CYA_1781 CYA_1781 CYA_1781 1784679 1784789 + hypothetical protein identified by Glimmer2%3B putative gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1781 CYA_1782 CYA_1782 rplJ rplJ 1785005 1785568 + ribosomal protein L10 identified by match to protein family HMM PF00466 gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1782 CYA_1783 CYA_1783 CYA_1783 1785659 1786702 - hypothetical protein identified by Glimmer2%3B putative gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1783 CYA_1784 CYA_1784 rplL rplL 1785642 1786055 + ribosomal protein L7/L12 identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855 gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1784 CYA_1785 CYA_1785 oxaA oxaA 1786385 1787563 + inner membrane protein OxaA identified by similarity to SP:Q8DL96%3B match to protein family HMM PF02096 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1785 CYA_1786 CYA_1786 CYA_1786 1787607 1788275 + R3H domain protein identified by match to protein family HMM PF01424 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1786 CYA_1787 CYA_1787 CYA_1787 1788361 1788864 + conserved hypothetical protein identified by match to protein family HMM PF02620 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1787 CYA_1788 CYA_1788 CYA_1788 1788917 1789828 + prenyltransferase%2C UbiA family identified by match to protein family HMM PF01040 gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1788 CYA_1789 CYA_1789 CYA_1789 1789887 1790675 - S4 domain protein identified by match to protein family HMM PF01479 gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1789 CYA_1790 CYA_1790 CYA_1790 1790745 1790817 + tRNA-His tRNA gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1790 CYA_1791 CYA_1791 CYA_1791 1790928 1792973 - putative hydantoin utilization protein A identified by similarity to SP:Q01262%3B match to protein family HMM PF01968%3B match to protein family HMM PF05378 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1791 CYA_1792 CYA_1792 CYA_1792 1793011 1794354 - conserved hypothetical protein identified by similarity to PIR:AH2006 gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1792 CYA_1793 CYA_1793 CYA_1793 1794531 1795040 - conserved hypothetical protein gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1793 CYA_1794 CYA_1794 CYA_1794 1795065 1795619 - conserved hypothetical protein gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1794 CYA_1795 CYA_1795 prc-1 prc-1 1795708 1797021 - C-terminal processing peptidase identified by similarity to SP:Q55669%3B match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1795 CYA_1796 CYA_1796 petB petB 1797227 1797874 + cytochrome b6 identified by similarity to SP:Q9X9S9%3B match to protein family HMM PF00033 gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1796 CYA_1797 CYA_1797 petD petD 1797970 1798464 + cytochrome b6-f complex%2C subunit IV identified by match to protein family HMM PF00032%3B match to protein family HMM TIGR01156 gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1797 CYA_1798 CYA_1798 leuB leuB 1798607 1799752 + 3-isopropylmalate dehydrogenase identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00169 gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1798 CYA_1799 CYA_1799 ntcA ntcA 1799868 1800542 - nitrogen-responsive regulatory protein identified by similarity to SP:Q05061%3B match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1799 CYA_1800 CYA_1800 CYA_1800 1800809 1802608 + peptidase%2C M61 (glycyl aminopeptidase) family identified by match to protein family HMM PF00595%3B match to protein family HMM PF05299 gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1800 CYA_1801 CYA_1801 CYA_1801 1802690 1803814 + conserved hypothetical protein gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1801 CYA_1802 CYA_1802 CYA_1802 1803822 1804709 - conserved hypothetical protein gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1802 CYA_1803 CYA_1803 upp upp 1805069 1805722 + uracil phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01091 gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1803 CYA_1804 CYA_1804 CYA_1804 1806029 1806937 + mannosyl-3-phosphoglycerate phosphatase family protein gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1804 CYA_1805 CYA_1805 CYA_1805 1807062 1807631 + TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1805 CYA_1806 CYA_1806 CYA_1806 1807825 1808778 + DnaJ domain protein identified by match to protein family HMM PF00226 gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1806 CYA_1807 CYA_1807 CYA_1807 1808788 1809849 - hypothetical protein identified by Glimmer2%3B putative gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1807 CYA_1808 CYA_1808 CYA_1808 1810185 1810472 + conserved hypothetical protein identified by similarity to PIR:AB1857 gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1808 CYA_1809 CYA_1809 CYA_1809 1810515 1811885 + conserved hypothetical protein identified by match to protein family HMM PF04459 gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1809 CYA_1810 CYA_1810 CYA_1810 1811890 1814445 + putative membrane protein identified by match to protein family HMM PF03699 gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1810 CYA_1811 CYA_1811 psbA-3 psbA-3 1814550 1815614 + photosystem II protein D1 identified by match to protein family HMM PF00124%3B match to protein family HMM TIGR01151 gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1811 CYA_1812 CYA_1812 ruvB-1 ruvB-1 1815754 1816890 + Holliday junction DNA helicase RuvB identified by match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM TIGR00635 gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1812 CYA_1813 CYA_1813 CYA_1813 1817071 1817193 + mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1813 CYA_1814 CYA_1814 CYA_1814 1817211 1819907 - putative phycobilisome 120 kDa linker polypeptide%2C core identified by match to protein family HMM PF00427%3B match to protein family HMM PF00502 gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1814 CYA_1815 CYA_1815 CYA_1815 1822297 1822383 - tRNA-Leu tRNA gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1815 CYA_1816 CYA_1816 CYA_1816 1820137 1822299 + tetratricopeptide repeat protein identified by match to protein family HMM PF07719 gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1816 CYA_1817 CYA_1817 CYA_1817 1822540 1823742 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1817 CYA_1818 CYA_1818 CYA_1818 1823895 1824095 - NifT/FixU family protein identified by match to protein family HMM PF06988 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1818 CYA_1819 CYA_1819 nifZ nifZ 1824092 1824355 - NifZ protein identified by match to protein family HMM PF04319 gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1819 CYA_1820 CYA_1820 nifV nifV 1824491 1825678 - homocitrate synthase NifV identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR02660 gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1820 CYA_1821 CYA_1821 nifK nifK 1825927 1827462 - nitrogenase molybdenum-iron protein beta chain identified by similarity to SP:Q55030%3B match to protein family HMM PF00148%3B match to protein family HMM TIGR01286 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1821 CYA_1822 CYA_1822 CYA_1822 1825837 1825938 + hypothetical protein identified by Glimmer2%3B putative gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1822 CYA_1823 CYA_1823 nifD nifD 1827528 1828991 - nitrogenase molybdenum-iron protein alpha chain identified by similarity to SP:Q00239%3B match to protein family HMM PF00148%3B match to protein family HMM TIGR01282%3B match to protein family HMM TIGR01862 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1823 CYA_1824 CYA_1824 nifH nifH 1829088 1829966 - nitrogenase iron protein identified by match to protein family HMM PF00142%3B match to protein family HMM TIGR01287 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1824 CYA_1825 CYA_1825 nifU nifU 1830244 1831182 - Fe-S cluster assembly protein NifU identified by match to protein family HMM PF01106%3B match to protein family HMM PF01592%3B match to protein family HMM PF04324%3B match to protein family HMM TIGR02000 gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1825 CYA_1826 CYA_1826 nifS nifS 1831239 1832429 - cysteine desulfurase identified by similarity to SP:P05341%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212 gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1826 CYA_1827 CYA_1827 CYA_1827 1832478 1832771 - ferredoxin%2C 4Fe-4S identified by similarity to SP:P46050%3B match to protein family HMM PF00037 gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1827 CYA_1828 CYA_1828 nifB nifB 1832797 1834233 - nitrogenase cofactor biosynthesis protein NifB identified by similarity to SP:P20627%3B match to protein family HMM PF02579%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR01290 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1828 CYA_1829 CYA_1829 CYA_1829 1834386 1834505 - hypothetical protein identified by Glimmer2%3B putative gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1829 CYA_1830 CYA_1830 CYA_1830 1835005 1835298 + conserved hypothetical protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1830 CYA_1831 CYA_1831 dpsA dpsA 1835353 1835898 + nutrient-stress induced DNA binding protein identified by similarity to GB:BAB75507.1%3B match to protein family HMM PF00210 gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1831 CYA_1832 CYA_1832 CYA_1832 1835941 1836165 + conserved hypothetical protein gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1832 CYA_1833 CYA_1833 CYA_1833 1836169 1836528 + Mo-dependent nitrogenase family protein identified by match to protein family HMM PF06967 gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1833 CYA_1834 CYA_1834 nifE nifE 1836519 1837925 + nitrogenase MoFe cofactor biosynthesis protein NifE identified by similarity to SP:P55673%3B match to protein family HMM PF00148%3B match to protein family HMM TIGR01283 gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1834 CYA_1835 CYA_1835 nifN nifN 1837913 1839250 + nitrogenase molybdenum-iron cofactor biosynthesis protein NifN identified by similarity to SP:O07356%3B match to protein family HMM PF00148%3B match to protein family HMM TIGR01285 gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1835 CYA_1836 CYA_1836 nifX nifX 1839325 1839744 + nitrogenase cofactor biosynthesis protein NifX identified by similarity to SP:P19078%3B match to protein family HMM PF02579%3B match to protein family HMM TIGR02663 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1836 CYA_1837 CYA_1837 CYA_1837 1839747 1840202 + conserved hypothetical protein identified by similarity to GB:AAC35200.1%3B match to protein family HMM PF03270 gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1837 CYA_1838 CYA_1838 CYA_1838 1840269 1840532 + conserved hypothetical protein identified by match to protein family HMM PF05082 gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1838 CYA_1839 CYA_1839 nifW nifW 1840529 1840894 + nitrogenase stabilizing/protective protein nifW identified by similarity to SP:P26481%3B match to protein family HMM PF03206 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1839 CYA_1840 CYA_1840 CYA_1840 1840937 1841236 + ferredoxin%2C 2Fe-2S identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02008 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1840 CYA_1841 CYA_1841 CYA_1841 1841265 1841642 + FeoA domain protein identified by match to protein family HMM PF04023 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1841 CYA_1842 CYA_1842 CYA_1842 1841737 1841994 + hypothetical protein identified by Glimmer2%3B putative gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1842 CYA_1843 CYA_1843 CYA_1843 1842337 1843989 + transcriptional regulator PatB identified by match to protein family HMM PF00037%3B match to protein family HMM PF01381 gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1843 CYA_1844 CYA_1844 CYA_1844 1844018 1844227 - molybdenum-pterin binding domain protein identified by match to protein family HMM PF03459%3B match to protein family HMM TIGR00638 gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1844 CYA_1845 CYA_1845 modA modA 1844477 1845244 + molybdate ABC transporter%2C molybdate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256 gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1845 CYA_1846 CYA_1846 modB modB 1845268 1847055 + molybdate ABC transporter%2C permease protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02141 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1846 CYA_1847 CYA_1847 cbiG/cobJ-2 cbiG/cobJ-2 1847074 1848795 - cbiG protein/precorrin-3B C17-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM PF01890%3B match to protein family HMM TIGR01466 gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1847 CYA_1848 CYA_1848 CYA_1848 1849177 1850049 + conserved domain protein gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1848 CYA_1849 CYA_1849 psbA-4 psbA-4 1850154 1851218 + photosystem II protein D1 identified by match to protein family HMM PF00124%3B match to protein family HMM TIGR01151 gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1849 CYA_1850 CYA_1850 ruvB-2 ruvB-2 1851392 1852504 + Holliday junction DNA helicase RuvB identified by match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM TIGR00635 gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1850 CYA_1851 CYA_1851 CYA_1851 1852542 1855241 - putative phycobilisome 120 kDa linker polypeptide%2C core identified by match to protein family HMM PF00427%3B match to protein family HMM PF00502 gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1851 CYA_1852 CYA_1852 CYA_1852 1855686 1857611 + TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1852 CYA_1853 CYA_1853 CYA_1853 1857612 1857695 - tRNA-Leu tRNA gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1853 CYA_1854 CYA_1854 CYA_1854 1857739 1859988 - TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1854 CYA_1855 CYA_1855 CYA_1855 1860270 1861091 - metal chelate ABC transporter%2C metal chelate-binding protein identified by match to protein family HMM PF01497 gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1855 CYA_1856 CYA_1856 CYA_1856 1860049 1860273 + hypothetical protein identified by Glimmer2%3B putative gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1856 CYA_1857 CYA_1857 crtH crtH 1861251 1862810 - carotenoid isomerase identified by similarity to GB:AAM71888.1%3B match to protein family HMM PF01266%3B match to protein family HMM TIGR02730 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1857 CYA_1858 CYA_1858 potB potB 1862898 1863845 - spermidine/putrescine ABC transporter%2C permease protein identified by similarity to SP:P23860%3B match to protein family HMM PF00528 gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1858 CYA_1859 CYA_1859 potA potA 1863839 1864972 - spermidine/putrescine ABC transporter%2C ATP-binding protein identified by similarity to SP:P23858%3B match to protein family HMM PF00005 gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1859 CYA_1860 CYA_1860 CYA_1860 1865040 1865843 - conserved hypothetical protein identified by similarity to GB:BAC91582.1 gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1860 CYA_1861 CYA_1861 CYA_1861 1865824 1865940 + hypothetical protein identified by Glimmer2%3B putative gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1861 CYA_1862 CYA_1862 frr-2 frr-2 1866057 1866605 + ribosome recycling factor identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496 gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1862 CYA_1863 CYA_1863 CYA_1863 1866701 1869412 + polyA polymerase family protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01368%3B match to protein family HMM PF01743%3B match to protein family HMM PF02272 gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1863 CYA_1864 CYA_1864 CYA_1864 1869502 1870437 + peptidase%2C M48B family identified by match to protein family HMM PF01435 gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1864 CYA_1865 CYA_1865 CYA_1865 1870909 1871271 + ISSoc6%2C orfB transposase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1865 CYA_1866 CYA_1866 aroB aroB 1871350 1872561 + 3-dehydroquinate synthase identified by similarity to SP:P07639%3B match to protein family HMM PF01761%3B match to protein family HMM TIGR01357 gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1866 CYA_1867 CYA_1867 asd asd 1872540 1873547 + aspartate-semialdehyde dehydrogenase identified by similarity to SP:Q04797%3B match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01296 gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1867 CYA_1868 CYA_1868 CYA_1868 1873582 1873776 + hypothetical protein identified by Glimmer2%3B putative gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1868 CYA_1869 CYA_1869 CYA_1869 1874380 1875156 + metal cation transporter%2C zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family identified by match to protein family HMM PF02535 gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1869 CYA_1870 CYA_1870 CYA_1870 1875934 1876707 - conserved hypothetical protein identified by similarity to GB:BAC89517.1 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1870 CYA_1871 CYA_1871 est est 1875186 1875968 + carboxylesterase identified by similarity to SP:Q06174 gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1871 CYA_1872 CYA_1872 CYA_1872 1876803 1877120 + hypothetical protein identified by Glimmer2%3B putative gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1872 CYA_1873 CYA_1873 CYA_1873 1877125 1877265 + hypothetical protein identified by Glimmer2%3B putative gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1873 CYA_1874 CYA_1874 CYA_1874 1877278 1877781 + transporter%2C cadmium resistance (CadD) family%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:AAB51227.1 pseudogene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1874 CYA_1875 CYA_1875 murB murB 1878066 1879004 - UDP-N-acetylenolpyruvoylglucosamine reductase identified by similarity to SP:P18579%3B match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179 gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1875 CYA_1876 CYA_1876 murC murC 1879001 1880533 - UDP-N-acetylmuramate--alanine ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01082 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1876 CYA_1877 CYA_1877 CYA_1877 1880798 1881943 + transporter%2C membrane fusion protein (MFP) family identified by match to protein family HMM PF00529 gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1877 CYA_1878 CYA_1878 devC devC 1881953 1883137 + probable glycolipid ABC exporter (DevE) family%2C permease protein identified by match to protein family HMM PF02687%3B match to protein family HMM TIGR01185 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1878 CYA_1879 CYA_1879 CYA_1879 1884050 1885003 - NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370 gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1879 CYA_1880 CYA_1880 devA devA 1883316 1884053 + probable glycolipid ABC exporter (DevE) family%2C ATP-binding protein identified by similarity to GB:CAA05977.1%3B match to protein family HMM PF00005 gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1880 CYA_1881 CYA_1881 alaS alaS 1885069 1887720 - alanyl-tRNA synthetase identified by match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344 gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1881 CYA_1882 CYA_1882 CYA_1882 1888007 1889680 + serine/threonine protein kinase identified by match to protein family HMM PF00069%3B match to protein family HMM PF00805 gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1882 CYA_1883 CYA_1883 CYA_1883 1889699 1890190 - hypothetical protein identified by Glimmer2%3B putative gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1883 CYA_1884 CYA_1884 CYA_1884 1890240 1890313 + tRNA-Asp tRNA gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1884 CYA_1885 CYA_1885 hisC hisC 1890397 1891458 + histidinol-phosphate aminotransferase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141 gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1885 CYA_1886 CYA_1886 CYA_1886 1891482 1895570 - hypothetical protein identified by Glimmer2%3B putative gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1886 CYA_1887 CYA_1887 CYA_1887 1895866 1895994 - hypothetical protein identified by Glimmer2%3B putative gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1887 CYA_1888 CYA_1888 CYA_1888 1896114 1896587 + small heat shock protein (HSP20) family protein identified by similarity to SP:Q06823%3B match to protein family HMM PF00011 gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1888 CYA_1889 CYA_1889 CYA_1889 1896634 1897416 - conserved hypothetical protein identified by similarity to GB:BAC90863.1%3B match to protein family HMM PF01887 gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1889 CYA_1890 CYA_1890 CYA_1890 1897469 1898749 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1890 CYA_1891 CYA_1891 CYA_1891 1898604 1899197 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1891 CYA_1892 CYA_1892 CYA_1892 1899291 1900046 - DNA-binding response regulator RpaA identified by similarity to GB:AAD30120.2%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1892 CYA_1893 CYA_1893 CYA_1893 1900194 1901972 - peptide/opine/nickel ABC transporter (PepT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1893 CYA_1894 CYA_1894 CYA_1894 1902123 1903463 - conserved hypothetical protein gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1894 CYA_1895 CYA_1895 CYA_1895 1903557 1905149 - peptidase%2C M23B family identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551 gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1895 CYA_1896 CYA_1896 cysS cysS 1905549 1907069 + cysteinyl-tRNA synthetase identified by match to protein family HMM PF01406%3B match to protein family HMM TIGR00435 gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1896 CYA_1897 CYA_1897 CYA_1897 1907093 1908622 - peptidase%2C S10 (carboxypeptidase Y) family identified by match to protein family HMM PF00450 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1897 CYA_1898 CYA_1898 CYA_1898 1908707 1909300 - conserved hypothetical protein identified by similarity to GB:BAC89656.1 gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1898 CYA_1899 CYA_1899 thiL thiL 1909497 1910519 - thiamine-monophosphate kinase identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR01379 gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1899 CYA_1900 CYA_1900 kaiC kaiC 1910603 1912207 - circadian clock protein KaiC identified by similarity to SP:Q8GGL1%3B match to protein family HMM PF06745%3B match to protein family HMM TIGR02655 gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1900 CYA_1901 CYA_1901 kaiB kaiB 1912233 1912535 - circadian clock protein KaiB identified by match to protein family HMM PF07689%3B match to protein family HMM TIGR02654 gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1901 CYA_1902 CYA_1902 kaiA kaiA 1912539 1913453 - circadian clock protein KaiA identified by match to protein family HMM PF07688 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1902 CYA_1903 CYA_1903 CYA_1903 1913692 1914624 + Inosine-uridine preferring nucleoside hydrolase family protein identified by match to protein family HMM PF01156 gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1903 CYA_1904 CYA_1904 pgsA pgsA 1914936 1915523 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1904 CYA_1905 CYA_1905 ruvC ruvC 1915477 1916058 + crossover junction endodeoxyribonuclease RuvC identified by match to protein family HMM PF02075%3B match to protein family HMM TIGR00228 gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1905 CYA_1906 CYA_1906 CYA_1906 1916125 1916772 + ATP-dependent protease La domain protein identified by match to protein family HMM PF02190 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1906 CYA_1907 CYA_1907 CYA_1907 1916902 1917633 + conserved hypothetical protein identified by similarity to PIR:AB2626 gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1907 CYA_1908 CYA_1908 CYA_1908 1917679 1918737 + hypothetical protein identified by Glimmer2%3B putative gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1908 CYA_1909 CYA_1909 CYA_1909 1918914 1920101 + conserved hypothetical protein identified by similarity to PIR:S76763%3B match to protein family HMM PF04339 gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1909 CYA_1910 CYA_1910 CYA_1910 1920107 1920781 - response regulator identified by match to protein family HMM PF00072 gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1910 CYA_1911 CYA_1911 CYA_1911 1920942 1921688 + peptidase%2C S54 (rhomboid) family identified by match to protein family HMM PF01694 gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1911 CYA_1912 CYA_1912 CYA_1912 1921739 1922380 + conserved hypothetical protein identified by similarity to GB:AAQ63052.1%3B match to protein family HMM PF05685 gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1912 CYA_1913 CYA_1913 CYA_1913 1922540 1923016 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1913 CYA_1914 CYA_1914 CYA_1914 1922972 1924272 + ISSoc3%2C orfB transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1914 CYA_1915 CYA_1915 CYA_1915 1924290 1925897 - NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 4 family identified by similarity to SP:P32421%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1915 CYA_1916 CYA_1916 CYA_1916 1926267 1927301 + putative adenosine deaminase identified by match to protein family HMM PF00962 gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1916 CYA_1917 CYA_1917 ybbB ybbB 1927378 1928427 - YbbB protein identified by similarity to SP:P33667 gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1917 CYA_1918 CYA_1918 CYA_1918 1928619 1929314 + isochorismatase family protein identified by match to protein family HMM PF00857 gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1918 CYA_1919 CYA_1919 CYA_1919 1929459 1930910 + carbohydrate uptake ABC transporter 2 (CUT2) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1919 CYA_1920 CYA_1920 CYA_1920 1930962 1931726 - urea ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1920 CYA_1921 CYA_1921 CYA_1921 1931761 1932528 - urea ABC transporter%2C ATP-binding protein identified by similarity to GB:CAB70951.1%3B match to protein family HMM PF00005 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1921 CYA_1922 CYA_1922 CYA_1922 1932699 1933907 - urea ABC transporter%2C permease protein identified by similarity to GB:CAB70950.1%3B match to protein family HMM PF02653 gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1922 CYA_1923 CYA_1923 CYA_1923 1933911 1935068 - urea ABC transporter%2C permease protein identified by similarity to GB:CAB70949.1%3B match to protein family HMM PF02653 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1923 CYA_1924 CYA_1924 CYA_1924 1935173 1936447 - urea ABC transporter%2C urea-binding protein identified by similarity to GB:CAB70948.1%3B match to protein family HMM PF01094%3B match to protein family HMM TIGR01409 gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1924 CYA_1925 CYA_1925 CYA_1925 1936845 1938779 + peptidase%2C S9C (acylaminoacyl-peptidase) family identified by match to protein family HMM PF00326 gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1925 CYA_1926 CYA_1926 CYA_1926 1938847 1940973 + transglycosylase%2C SLT family identified by match to protein family HMM PF01464%3B match to protein family HMM PF07719 gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1926 CYA_1927 CYA_1927 CYA_1927 1941213 1941491 - conserved hypothetical protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1927 CYA_1928 CYA_1928 CYA_1928 1942255 1943112 - peptidase S49 (protease IV) family%2C nonpeptidase-like protein identified by match to protein family HMM PF01972 gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1928 CYA_1929 CYA_1929 CYA_1929 1941566 1942258 + DnaJ domain protein identified by match to protein family HMM PF00226 gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1929 CYA_1930 CYA_1930 CYA_1930 1943183 1944007 - hypothetical protein identified by Glimmer2%3B putative gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1930 CYA_1931 CYA_1931 CYA_1931 1944066 1945040 - fatty acid desaturase identified by similarity to GB:AAF78203.1%3B match to protein family HMM PF00487 gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1931 CYA_1932 CYA_1932 psaK psaK 1945381 1945626 + photosystem I reaction center protein PsaK gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1932 CYA_1933 CYA_1933 psbK psbK 1945752 1945889 + photosystem II reaction center protein PsbK identified by similarity to SP:P14089%3B match to protein family HMM PF02533 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1933 CYA_1934 CYA_1934 CYA_1934 1946054 1946593 - conserved hypothetical protein gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1934 CYA_1935 CYA_1935 CYA_1935 1946705 1947118 - conserved hypothetical protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1935 CYA_1936 CYA_1936 chlI chlI 1947458 1948516 + magnesium chelatase%2C ATPase subunit I identified by match to protein family HMM PF01078%3B match to protein family HMM TIGR02030 gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1936 CYA_1937 CYA_1937 CYA_1937 1948622 1949239 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1937 CYA_1938 CYA_1938 CYA_1938 1949094 1950374 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1938 CYA_1939 CYA_1939 CYA_1939 1950384 1951052 - conserved hypothetical protein gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1939 CYA_1940 CYA_1940 CYA_1940 1951110 1951634 - thermonuclease identified by similarity to SP:P43270%3B match to protein family HMM PF00565 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1940 CYA_1941 CYA_1941 CYA_1941 1951778 1952932 - conserved hypothetical protein identified by similarity to GB:BAC09914.1%3B match to protein family HMM PF01837 gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1941 CYA_1942 CYA_1942 icc icc 1953067 1953891 - putative 3''%2C5''-cyclic-nucleotide phosphodiesterase identified by similarity to SP:P36650%3B similarity to PIR:E64065%3B match to protein family HMM PF00149 gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1942 CYA_1943 CYA_1943 psbP psbP 1954079 1954609 - photosystem II oxygen evolving complex protein PsbP gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1943 CYA_1944 CYA_1944 CYA_1944 1954758 1957040 - RelA/SpoT family protein identified by match to protein family HMM PF01842%3B match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1944 CYA_1945 CYA_1945 CYA_1945 1957239 1958108 - GTPase family protein identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00650 gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1945 CYA_1946 CYA_1946 CYA_1946 1958288 1958773 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00111 gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1946 CYA_1947 CYA_1947 CYA_1947 1958780 1960201 + carbohydrate kinase%2C FGGY family identified by match to protein family HMM PF00370 gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1947 CYA_1948 CYA_1948 CYA_1948 1960584 1962242 - ABC1 domain protein identified by match to protein family HMM PF03109 gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1948 CYA_1949 CYA_1949 CYA_1949 1962280 1962861 - AhpC/TSA family protein identified by similarity to SP:P23480%3B match to protein family HMM PF00578 gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1949 CYA_1950 CYA_1950 CYA_1950 1962899 1963336 - conserved hypothetical protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1950 CYA_1951 CYA_1951 CYA_1951 1963340 1963903 - putative lipoprotein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1951 CYA_1952 CYA_1952 CYA_1952 1964028 1964115 + tRNA-Ser tRNA gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1952 CYA_1953 CYA_1953 CYA_1953 1964218 1965027 - RNA methyltransferase%2C TrmH family%2C group 1 identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00050 gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1953 CYA_1954 CYA_1954 CYA_1954 1965094 1965669 + putative lipoprotein gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1954 CYA_1955 CYA_1955 lpxC lpxC 1965676 1966587 + UDP-3-0-acyl N-acetylglucosamine deacetylase identified by match to protein family HMM PF03331%3B match to protein family HMM TIGR00325 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1955 CYA_1956 CYA_1956 CYA_1956 1966855 1968081 + ISSoc5%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1956 CYA_1957 CYA_1957 fabZ fabZ 1968161 1968661 + beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01750 gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1957 CYA_1958 CYA_1958 CYA_1958 1968830 1969306 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1958 CYA_1959 CYA_1959 CYA_1959 1969262 1970533 + ISSoc3%2C orfB transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1959 CYA_1960 CYA_1960 lpxA lpxA 1970741 1971652 + acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase identified by match to protein family HMM PF00132%3B match to protein family HMM TIGR01852 gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1960 CYA_1961 CYA_1961 lpxB lpxB 1971649 1972839 + lipid-A-disaccharide synthetase identified by match to protein family HMM PF02684%3B match to protein family HMM TIGR00215 gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1961 CYA_1962 CYA_1962 CYA_1962 1972842 1973888 - conserved hypothetical protein identified by match to protein family HMM PF07755 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1962 CYA_1963 CYA_1963 CYA_1963 1973893 1974942 - mandelate racemase/muconate lactonizing enzyme family protein identified by match to protein family HMM PF01188%3B match to protein family HMM PF02746 gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1963 CYA_1964 CYA_1964 CYA_1964 1975121 1976758 + putative acetolactate synthase%2C catabolic identified by similarity to SP:P27696%3B match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776 gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1964 CYA_1965 CYA_1965 CYA_1965 1976915 1978981 + type IV pilus assembly protein PilB identified by match to protein family HMM PF00437%3B match to protein family HMM PF05157 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1965 CYA_1966 CYA_1966 pilT-1 pilT-1 1979154 1980284 + twitching motility protein identified by similarity to SP:P24559%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1966 CYA_1967 CYA_1967 pilC pilC 1980445 1981671 + type IV pilus assembly protein PilC identified by match to protein family HMM PF00482 gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1967 CYA_1968 CYA_1968 CYA_1968 1981723 1986432 + alpha-2-macroglobulin family protein identified by match to protein family HMM PF01835%3B match to protein family HMM PF07703 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1968 CYA_1969 CYA_1969 CYA_1969 1986510 1988141 + phosphoglucomutase/phosphomannomutase family protein identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1969 CYA_1970 CYA_1970 CYA_1970 1989186 1989647 - conserved hypothetical protein gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1970 CYA_1971 CYA_1971 CYA_1971 1988278 1989189 + hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1971 CYA_1972 CYA_1972 CYA_1972 1989763 1989836 + tRNA-Pro tRNA gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1972 CYA_1973 CYA_1973 CYA_1973 1989936 1992536 - glycosyl hydrolase%2C family 57 identified by match to protein family HMM PF03065 gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1973 CYA_1974 CYA_1974 folD folD 1992867 1993736 - FolD bifunctional protein identified by similarity to SP:P54382%3B match to protein family HMM PF00763%3B match to protein family HMM PF02882 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1974 CYA_1975 CYA_1975 xseB xseB 1993838 1994074 - exodeoxyribonuclease VII%2C small subunit identified by similarity to SP:P22938 gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1975 CYA_1976 CYA_1976 xseA xseA 1994055 1995290 - exodeoxyribonuclease VII%2C large subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237 gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1976 CYA_1977 CYA_1977 CYA_1977 1995330 1996559 + ISSoc7%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1977 CYA_1978 CYA_1978 CYA_1978 1996733 1997869 + putative membrane protein identified by match to protein family HMM PF01594 gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1978 CYA_1979 CYA_1979 CYA_1979 1997989 1998363 + conserved hypothetical protein identified by similarity to GB:BAC91746.1%3B match to protein family HMM PF06868 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1979 CYA_1980 CYA_1980 CYA_1980 1998386 1999501 + pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1980 CYA_1981 CYA_1981 CYA_1981 1999601 2001976 + D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein identified by match to protein family HMM PF03894 gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1981 CYA_1982 CYA_1982 mraY mraY 2002148 2003170 + phospho-N-acetylmuramoyl-pentapeptide-transferase identified by similarity to SP:Q03521%3B match to protein family HMM PF00953%3B match to protein family HMM TIGR00445 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1982 CYA_1983 CYA_1983 CYA_1983 2003387 2003509 + mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1983 CYA_1984 CYA_1984 CYA_1984 2003653 2004384 - conserved domain protein identified by similarity to PIR:AH2164 gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1984 CYA_1985 CYA_1985 CYA_1985 2004448 2005065 - pyridoxamine 5'-phosphate oxidase family protein identified by similarity to SP:Q51521 gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1985 CYA_1986 CYA_1986 CYA_1986 2005093 2006355 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1986 CYA_1987 CYA_1987 CYA_1987 2006475 2007128 - conserved hypothetical protein identified by similarity to PIR:AC2428 gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1987 CYA_1988 CYA_1988 murA murA 2007472 2008917 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1988 CYA_1989 CYA_1989 CYA_1989 2010166 2010651 - sensor histidine kinase identified by match to protein family HMM PF02518 gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1989 CYA_1990 CYA_1990 CYA_1990 2009039 2010169 + geranylgeranyl reductase family protein identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR02032 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1990 CYA_1991 CYA_1991 CYA_1991 2010771 2011592 - OmpA family protein identified by match to protein family HMM PF00691 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1991 CYA_1992 CYA_1992 CYA_1992 2011735 2012391 - peptidase%2C S24 (LexA) family identified by match to protein family HMM PF00717 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1992 CYA_1993 CYA_1993 CYA_1993 2012542 2012814 + conserved hypothetical protein gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1993 CYA_1994 CYA_1994 CYA_1994 2012908 2013270 + NADH-ubiquinone/plastoquinone oxidoreductase%2C subunit 3 identified by match to protein family HMM PF00507 gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1994 CYA_1995 CYA_1995 CYA_1995 2013267 2014001 + NADH-ubiquinone/plastoquinone oxidoreductase%2C K subunit identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR01957 gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1995 CYA_1996 CYA_1996 CYA_1996 2014003 2014548 + NADH-ubiquinone/plastoquinone oxidoreductase%2C J subunit identified by match to protein family HMM PF00329 gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1996 CYA_1997 CYA_1997 CYA_1997 2014596 2014769 + conserved hypothetical protein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1997 CYA_1998 CYA_1998 CYA_1998 2014781 2016007 + conserved hypothetical protein identified by similarity to PIR:AF2225%3B match to protein family HMM PF02636 gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1998 CYA_1999 CYA_1999 CYA_1999 2015755 2016264 + hypothetical protein identified by Glimmer2%3B putative gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_1999 CYA_2000 CYA_2000 CYA_2000 2016332 2017822 - conserved hypothetical protein gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2000 CYA_2001 CYA_2001 CYA_2001 2017853 2019133 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2001 CYA_2002 CYA_2002 CYA_2002 2018988 2019605 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2002 CYA_2003 CYA_2003 CYA_2003 2019791 2021053 - conserved hypothetical protein gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2003 CYA_2004 CYA_2004 CYA_2004 2021157 2021975 + conserved hypothetical protein identified by similarity to GB:BAC09915.1 gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2004 CYA_2005 CYA_2005 CYA_2005 2022286 2023263 + staphylococcal nuclease domain protein identified by match to protein family HMM PF00565 gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2005 CYA_2006 CYA_2006 CYA_2006 2023324 2024142 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2006 CYA_2007 CYA_2007 CYA_2007 2024321 2024443 + hypothetical protein identified by Glimmer2%3B putative gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2007 CYA_2008 CYA_2008 CYA_2008 2024694 2025113 + conserved hypothetical protein gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2008 CYA_2009 CYA_2009 CYA_2009 2025296 2026390 - MazG family protein identified by match to protein family HMM PF03819%3B match to protein family HMM TIGR00444 gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2009 CYA_2010 CYA_2010 CYA_2010 2026943 2027347 + ISSoc4%2C transposase orfA identified by similarity to GB:AAC97588.1 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2010 CYA_2011 CYA_2011 CYA_2011 2027283 2027888 + gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2011 CYA_2012 CYA_2012 CYA_2012 2027934 2028476 + putative transposase%2C truncation identified by match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2012 CYA_2013 CYA_2013 recG recG 2028491 2030812 - ATP-dependent DNA helicase RecG identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF01336%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00643 gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2013 CYA_2014 CYA_2014 psaM psaM 2031074 2031172 - photosystem I reaction center subunit XII identified by similarity to SP:P25903%3B match to protein family HMM PF07465 gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2014 CYA_2015 CYA_2015 glyA glyA 2031422 2032726 + serine hydroxymethyltransferase identified by similarity to SP:P39148%3B match to protein family HMM PF00464%3B match to protein family HMM PF01212 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2015 CYA_2016 CYA_2016 CYA_2016 2032760 2033854 + glycosyl transferase%2C group 4 family protein identified by match to protein family HMM PF00953 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2016 CYA_2017 CYA_2017 CYA_2017 2033862 2034485 + hypothetical protein identified by Glimmer2%3B putative gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2017 CYA_2018 CYA_2018 apt apt 2034498 2035025 - adenine phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01090 gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2018 CYA_2019 CYA_2019 CYA_2019 2035204 2035641 + hypothetical protein identified by Glimmer2%3B putative gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2019 CYA_2020 CYA_2020 CYA_2020 2035763 2037637 - peptidase M3B family%2C nonpeptidase-like protein gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2020 CYA_2021 CYA_2021 CYA_2021 2037846 2039396 + Mg chelatase-like protein identified by match to protein family HMM PF01078%3B match to protein family HMM TIGR00368 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2021 CYA_2022 CYA_2022 recF recF 2039458 2040600 - DNA replication and repair protein RecF identified by similarity to SP:P29232%3B match to protein family HMM TIGR00611 gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2022 CYA_2023 CYA_2023 CYA_2023 2040704 2041396 - helix-turn-helix domain protein gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2023 CYA_2024 CYA_2024 CYA_2024 2041487 2042728 - sensor histidine kinase%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to PIR:AH2201%3B match to protein family HMM PF00512 pseudogene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2024 CYA_2025 CYA_2025 CYA_2025 2042729 2042851 - mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2025 CYA_2026 CYA_2026 CYA_2026 2042952 2043209 - hypothetical protein identified by Glimmer2%3B putative gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2026 CYA_2027 CYA_2027 CYA_2027 2043231 2043920 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2027 CYA_2028 CYA_2028 CYA_2028 2043999 2044391 + conserved domain protein gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2028 CYA_2029 CYA_2029 CYA_2029 2044446 2045318 - iron chelate ABC transporter (FeCT) family%2C substrate-binding protein identified by match to protein family HMM PF01497 gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2029 CYA_2030 CYA_2030 CYA_2030 2045348 2046667 - TonB family protein identified by similarity to GB:AAF04082.1%3B match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2030 CYA_2031 CYA_2031 CYA_2031 2046708 2049128 - transporter%2C TonB-dependent heme/hemoglobin receptor family identified by similarity to GB:AAC27029.1%3B match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786 gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2031 CYA_2032 CYA_2032 CYA_2032 2049166 2050011 - iron chelate ABC transporter (FeCT) family%2C ATP-binding protein identified by similarity to SP:P15031%3B match to protein family HMM PF00005 gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2032 CYA_2033 CYA_2033 CYA_2033 2050008 2051051 - iron chelate uptake ABC transporter (FeCT) family%2C permease protein identified by similarity to SP:P15029%3B match to protein family HMM PF01032 gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2033 CYA_2034 CYA_2034 CYA_2034 2051443 2052723 - putative transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2034 CYA_2035 CYA_2035 mutS mutS 2052972 2055620 + DNA mismatch repair protein MutS identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070 gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2035 CYA_2036 CYA_2036 CYA_2036 2055623 2056153 - conserved hypothetical protein identified by similarity to GB:BAC91704.1 gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2036 CYA_2037 CYA_2037 CYA_2037 2056745 2057839 + RNA polymerase sigma-70 factor family identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545 gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2037 CYA_2038 CYA_2038 mviN mviN 2057850 2059484 - integral membrane protein MviN identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2038 CYA_2039 CYA_2039 CYA_2039 2059650 2060015 - conserved domain protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2039 CYA_2040 CYA_2040 cpcE-2 cpcE-2 2060229 2061056 - phycocyanin alpha subunit phycocyanobilin lyase%2C CpcE subunit identified by match to protein family HMM PF03130 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2040 CYA_2041 CYA_2041 cpcC cpcC 2061089 2061946 - phycobilisome 32.1 kDa linker polypeptide%2C phycocyanin-associated%2C rod identified by similarity to SP:P11398%3B match to protein family HMM PF00427%3B match to protein family HMM PF01383 gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2041 CYA_2042 CYA_2042 cpcA-2 cpcA-2 2062221 2062703 - phycocyanin%2C alpha subunit identified by similarity to SP:P07121%3B match to protein family HMM PF00502%3B match to protein family HMM TIGR01338 gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2042 CYA_2043 CYA_2043 cpcB-2 cpcB-2 2062891 2063409 - phycocyanin%2C beta subunit identified by similarity to SP:P07120%3B match to protein family HMM PF00502 gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2043 CYA_2044 CYA_2044 cpeT cpeT 2064145 2064744 + CpeT protein identified by similarity to GB:AAK11648.1%3B match to protein family HMM PF06206 gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2044 CYA_2045 CYA_2045 pheS pheS 2064896 2065897 + phenylalanyl-tRNA synthetase%2C alpha subunit identified by match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468 gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2045 CYA_2046 CYA_2046 CYA_2046 2065899 2066192 - conserved hypothetical protein identified by similarity to PIR:AD1867 gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2046 CYA_2047 CYA_2047 CYA_2047 2066390 2066974 - conserved hypothetical protein gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2047 CYA_2048 CYA_2048 CYA_2048 2067062 2067805 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2048 CYA_2049 CYA_2049 CYA_2049 2067865 2069631 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2049 CYA_2050 CYA_2050 CYA_2050 2069890 2071383 - cellulose synthase%2C catalytic subunit-like protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2050 CYA_2051 CYA_2051 rpmA rpmA 2071510 2071779 - ribosomal protein L27 identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062 gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2051 CYA_2052 CYA_2052 rplU rplU 2071840 2072247 - ribosomal protein L21 identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061 gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2052 CYA_2053 CYA_2053 CYA_2053 2072405 2073154 - conserved hypothetical protein gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2053 CYA_2054 CYA_2054 CYA_2054 2073207 2073488 - conserved hypothetical protein gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2054 CYA_2055 CYA_2055 CYA_2055 2073485 2074417 - DnaJ family protein identified by match to protein family HMM PF00226%3B match to protein family HMM PF01556 gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2055 CYA_2056 CYA_2056 CYA_2056 2074539 2075300 - conserved hypothetical protein identified by similarity to GB:BAC09967.1 gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2056 CYA_2057 CYA_2057 CYA_2057 2075577 2076425 - peptidase%2C M28A family identified by match to protein family HMM PF04389 gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2057 CYA_2058 CYA_2058 CYA_2058 2076422 2077198 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2058 CYA_2059 CYA_2059 lpdA lpdA 2077343 2078725 + dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350 gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2059 CYA_2060 CYA_2060 CYA_2060 2078861 2080132 + conserved hypothetical protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2060 CYA_2061 CYA_2061 CYA_2061 2080171 2081562 - putative peptidase TldD Member of MEROPS family U62%2C which contains contains microcin-processing peptidases of unknown catalytic mechanism.%3B identified by similarity to SP:P46473%3B match to protein family HMM PF01523 gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2061 CYA_2062 CYA_2062 glgB glgB 2081587 2083899 - 1%2C4-alpha-glucan branching enzyme identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR01515 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2062 CYA_2063 CYA_2063 CYA_2063 2083980 2085251 - ISSoc3%2C orfB transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2063 CYA_2064 CYA_2064 CYA_2064 2085207 2085683 + ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2064 CYA_2065 CYA_2065 tatA-2 tatA-2 2085907 2086185 + Sec-independent protein translocase protein TatA identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2065 CYA_2066 CYA_2066 CYA_2066 2086424 2087257 + RNA polymerase sigma-70 domain protein identified by match to protein family HMM PF04542 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2066 CYA_2067 CYA_2067 CYA_2067 2087286 2088311 + conserved hypothetical protein identified by match to protein family HMM PF05249 gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2067 CYA_2068 CYA_2068 CYA_2068 2088432 2088539 + hypothetical protein identified by Glimmer2%3B putative gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2068 CYA_2069 CYA_2069 CYA_2069 2088582 2088947 + conserved hypothetical protein identified by similarity to PIR:S76173 gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2069 CYA_2070 CYA_2070 CYA_2070 2089022 2089474 + conserved hypothetical protein identified by similarity to GB:BAC08024.1 gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2070 CYA_2071 CYA_2071 glgA-1 glgA-1 2089672 2091147 + glycogen/starch synthase%2C ADP-glucose type identified by match to protein family HMM PF00534%3B match to protein family HMM TIGR02095 gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2071 CYA_2072 CYA_2072 CYA_2072 2091300 2092907 + glycosyl hydrolase%2C family 57 identified by match to protein family HMM PF03065 gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2072 CYA_2073 CYA_2073 ilvB ilvB 2093190 2094986 - acetolactate synthase%2C large subunit%2C biosynthetic type identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2073 CYA_2074 CYA_2074 CYA_2074 2095217 2095312 + hypothetical protein identified by Glimmer2%3B putative gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2074 CYA_2075 CYA_2075 CYA_2075 2095412 2095531 + hypothetical protein identified by Glimmer2%3B putative gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2075 CYA_2076 CYA_2076 CYA_2076 2095714 2096265 - hypothetical protein identified by Glimmer2%3B putative gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2076 CYA_2077 CYA_2077 CYA_2077 2096252 2096671 - conserved hypothetical protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2077 CYA_2078 CYA_2078 CYA_2078 2096672 2098180 - putative membrane protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2078 CYA_2079 CYA_2079 CYA_2079 2098221 2100545 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720 gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2079 CYA_2080 CYA_2080 CYA_2080 2100756 2101133 - hypothetical protein identified by Glimmer2%3B putative gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2080 CYA_2081 CYA_2081 CYA_2081 2101216 2101767 - ISSoc4%2C transposase orfB identified by similarity to GB:AAC97587.1 gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2081 CYA_2082 CYA_2082 CYA_2082 2101749 2102147 - ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2082 CYA_2083 CYA_2083 CYA_2083 2102434 2102694 - transporter%2C sulfate permease (SulP) family%2C truncation gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2083 CYA_2084 CYA_2084 CYA_2084 2102943 2103374 + hypothetical protein identified by Glimmer2%3B putative gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2084 CYA_2085 CYA_2085 CYA_2085 2103444 2104289 + conserved hypothetical protein identified by similarity to GB:BAC90914.1 gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2085 CYA_2086 CYA_2086 CYA_2086 2104399 2105160 + conserved hypothetical protein identified by similarity to GB:BAC07807.1 gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2086 CYA_2087 CYA_2087 CYA_2087 2105167 2105934 + conserved hypothetical protein identified by match to protein family HMM PF02405%3B match to protein family HMM TIGR00056 gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2087 CYA_2088 CYA_2088 CYA_2088 2105977 2107104 - peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type identified by match to protein family HMM PF00160 gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2088 CYA_2089 CYA_2089 CYA_2089 2107234 2107683 - collagen alpha 1(III) chain gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2089 CYA_2090 CYA_2090 CYA_2090 2107752 2107850 + hypothetical protein identified by Glimmer2%3B putative gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2090 CYA_2091 CYA_2091 CYA_2091 2108029 2109066 - hypothetical protein identified by Glimmer2%3B putative gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2091 CYA_2092 CYA_2092 CYA_2092 2108667 2108861 - hypothetical protein identified by Glimmer2%3B putative gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2092 CYA_2093 CYA_2093 CYA_2093 2109020 2110315 - hypothetical protein identified by Glimmer2%3B putative gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2093 CYA_2094 CYA_2094 CYA_2094 2110346 2110480 + hypothetical protein identified by Glimmer2%3B putative gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2094 CYA_2095 CYA_2095 CYA_2095 2110496 2111197 + hypothetical protein identified by Glimmer2%3B putative gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2095 CYA_2096 CYA_2096 tyrS tyrS 2111265 2112518 - tyrosyl-tRNA synthetase identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234 gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2096 CYA_2097 CYA_2097 psbU psbU 2112928 2113326 - photosystem II 12 kDa extrinsic protein PsbU identified by similarity to SP:P20094%3B match to protein family HMM PF06514 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2097 CYA_2098 CYA_2098 gcvP gcvP 2113505 2116435 + glycine dehydrogenase identified by match to protein family HMM PF01212%3B match to protein family HMM PF02347%3B match to protein family HMM TIGR00461 gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2098 CYA_2099 CYA_2099 CYA_2099 2116444 2117259 - conserved domain protein gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2099 CYA_2100 CYA_2100 CYA_2100 2117544 2118944 - amidohydrolase%2C AtzE family identified by match to protein family HMM PF01425%3B match to protein family HMM TIGR00132%3B match to protein family HMM TIGR02715 gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2100 CYA_2101 CYA_2101 CYA_2101 2118941 2119129 - conserved hypothetical protein identified by similarity to PIR:AF1933 gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2101 CYA_2102 CYA_2102 CYA_2102 2119223 2119831 - hypothetical protein identified by Glimmer2%3B putative gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2102 CYA_2103 CYA_2103 CYA_2103 2119978 2120823 - conserved hypothetical protein identified by similarity to PIR:AH2295%3B match to protein family HMM PF05430 gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2103 CYA_2104 CYA_2104 accD accD 2120988 2121932 + acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit identified by match to protein family HMM TIGR00515 gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2104 CYA_2105 CYA_2105 CYA_2105 2122212 2122586 + anti-anti-sigma factor identified by similarity to SP:Q9WVX8%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00377 gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2105 CYA_2106 CYA_2106 CYA_2106 2123364 2125556 - TrkA domain protein identified by match to protein family HMM PF02254 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2106 CYA_2107 CYA_2107 CYA_2107 2122669 2123367 + conserved hypothetical protein gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2107 CYA_2108 CYA_2108 CYA_2108 2125625 2125777 - hypothetical protein identified by Glimmer2%3B putative gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2108 CYA_2109 CYA_2109 CYA_2109 2125969 2127015 + ferric iron uptake ABC transporter (FeT) family%2C substrate binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01409 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2109 CYA_2110 CYA_2110 CYA_2110 2127006 2127473 + hypothetical protein identified by Glimmer2%3B putative gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2110 CYA_2111 CYA_2111 CYA_2111 2127641 2129362 + ferric iron uptake ABC transporter (FeT) family%2C permease protein identified by match to protein family HMM PF00528 gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2111 CYA_2112 CYA_2112 atpG atpG 2129478 2130422 - ATP synthase F1%2C gamma subunit identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146 gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2112 CYA_2113 CYA_2113 atpA atpA 2130468 2131988 - ATP synthase F1%2C alpha subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962 gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2113 CYA_2114 CYA_2114 atpH atpH 2132048 2132596 - ATP synthase F1%2C delta subunit identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145 gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2114 CYA_2115 CYA_2115 atpF atpF 2132613 2133155 - ATP synthase F0%2C B subunit identified by similarity to SP:P12407%3B match to protein family HMM PF00430 gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2115 CYA_2116 CYA_2116 CYA_2116 2133209 2133682 - ATP synthase F0%2C B' subunit identified by similarity to SP:P12410%3B match to protein family HMM PF00430 gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2116 CYA_2117 CYA_2117 atpE atpE 2133777 2134022 - ATP synthase F0%2C C subunit identified by similarity to SP:P12409%3B match to protein family HMM PF00137%3B match to protein family HMM TIGR01260 gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2117 CYA_2118 CYA_2118 CYA_2118 2134167 2134298 - hypothetical protein identified by Glimmer2%3B putative gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2118 CYA_2119 CYA_2119 atpB atpB 2134252 2134998 - ATP synthase F0%2C A subunit identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131 gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2119 CYA_2120 CYA_2120 CYA_2120 2135004 2135384 - ATP synthase protein I identified by similarity to SP:P12403 gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2120 CYA_2121 CYA_2121 CYA_2121 2135901 2136488 + conserved hypothetical protein identified by similarity to PIR:AB2162 gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2121 CYA_2122 CYA_2122 CYA_2122 2136485 2136799 + conserved hypothetical protein gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2122 CYA_2123 CYA_2123 gpmI gpmI 2136813 2138405 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307 gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2123 CYA_2124 CYA_2124 CYA_2124 2138613 2139137 - tetratricopeptide repeat identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2124 CYA_2125 CYA_2125 dps dps 2139180 2139680 - dps protein identified by similarity to PDB:1O9R_A%3B match to protein family HMM PF00210 gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2125 CYA_2126 CYA_2126 trmE trmE 2139799 2141178 - tRNA modification GTPase TrmE identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650 gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2126 CYA_2127 CYA_2127 glgP glgP 2141368 2143968 + alpha-glucan phosphorylase identified by similarity to GB:CAA04523.1%3B match to protein family HMM PF00343%3B match to protein family HMM TIGR02094 gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2127 CYA_2128 CYA_2128 CYA_2128 2144130 2145191 + tetratricopeptide repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2128 CYA_2129 CYA_2129 CYA_2129 2145184 2145312 + hypothetical protein identified by Glimmer2%3B putative gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2129 CYA_2130 CYA_2130 ilvN ilvN 2145309 2145833 + acetolactate synthase%2C small subunit identified by match to protein family HMM PF01842%3B match to protein family HMM TIGR00119 gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2130 CYA_2131 CYA_2131 CYA_2131 2145879 2146520 + hypothetical protein identified by Glimmer2%3B putative gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2131 CYA_2132 CYA_2132 CYA_2132 2146709 2147455 - putative membrane protein gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2132 CYA_2133 CYA_2133 CYA_2133 2148619 2148723 - hypothetical protein identified by Glimmer2%3B putative gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2133 CYA_2134 CYA_2134 glk glk 2147594 2148640 + glucokinase identified by match to protein family HMM PF02685%3B match to protein family HMM TIGR00749 gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2134 CYA_2135 CYA_2135 CYA_2135 2148726 2149301 - hydrolase%2C NUDIX family identified by match to protein family HMM PF00293 gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2135 CYA_2136 CYA_2136 trpE trpE 2149406 2150902 + anthranilate synthase component I identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00564 gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2136 CYA_2137 CYA_2137 CYA_2137 2150921 2151715 + phytanoyl-CoA dioxygenase PhyH family protein identified by match to protein family HMM PF05721 gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2137 CYA_2138 CYA_2138 chlG chlG 2151943 2152863 + chlorophyll synthase%2C ChlG identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01476%3B match to protein family HMM TIGR02056 gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2138 CYA_2139 CYA_2139 CYA_2139 2152880 2153023 + hypothetical protein identified by Glimmer2%3B putative gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2139 CYA_2140 CYA_2140 CYA_2140 2153020 2153475 + hypothetical protein identified by Glimmer2%3B putative gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2140 CYA_2141 CYA_2141 CYA_2141 2153498 2154880 - sugar transporter%2C glycoside-pentoside-hexuronide (GPH):cation symporter family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00792 gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2141 CYA_2142 CYA_2142 CYA_2142 2154964 2156349 - putative aspartate ammonia-lyase identified by similarity to SP:P26899%3B match to protein family HMM PF00206 gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2142 CYA_2143 CYA_2143 CYA_2143 2156386 2156652 - hypothetical protein identified by Glimmer2%3B putative gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2143 CYA_2144 CYA_2144 infC infC 2156949 2157506 + translation initiation factor IF-3 identified by similarity to SP:O33567%3B match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2144 CYA_2145 CYA_2145 bcp bcp 2157522 2157986 + bacterioferritin comigratory protein identified by match to protein family HMM PF00578 gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2145 CYA_2146 CYA_2146 CYA_2146 2158113 2160044 + serine/threonine protein kinase identified by similarity to GB:AAD42859.1%3B match to protein family HMM PF00069 gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2146 CYA_2147 CYA_2147 CYA_2147 2160096 2161619 - GTP-binding domain protein identified by match to protein family HMM PF01926 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2147 CYA_2148 CYA_2148 CYA_2148 2161837 2162022 - hypothetical protein identified by Glimmer2%3B putative gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2148 CYA_2149 CYA_2149 CYA_2149 2161892 2162068 - hypothetical protein identified by Glimmer2%3B putative gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2149 CYA_2150 CYA_2150 CYA_2150 2162126 2162611 - fasciclin domain protein identified by match to protein family HMM PF02469 gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2150 CYA_2151 CYA_2151 CYA_2151 2162830 2164593 + phospholipase D/competence protein ComEA helix-hairpin-helix domain protein identified by match to protein family HMM PF00614%3B match to protein family HMM PF00633%3B match to protein family HMM TIGR00426 gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2151 CYA_2152 CYA_2152 accA accA 2164603 2165586 - acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513 gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2152 CYA_2153 CYA_2153 CYA_2153 2166261 2166743 - hypothetical protein identified by Glimmer2%3B putative gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2153 CYA_2154 CYA_2154 CYA_2154 2165821 2166285 + hypothetical protein identified by Glimmer2%3B putative gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2154 CYA_2155 CYA_2155 CYA_2155 2166747 2169575 - sensor histindine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2155 CYA_2156 CYA_2156 CYA_2156 2169520 2170581 - putative methyl-accepting chemotaxis protein%2C truncation identified by match to protein family HMM PF00015 gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2156 CYA_2157 CYA_2157 CYA_2157 2171905 2172813 - conserved domain protein identified by similarity to PIR:S76707 gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2157 CYA_2158 CYA_2158 CYA_2158 2170715 2171908 + ISSoc1%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2158 CYA_2159 CYA_2159 CYA_2159 2172824 2173066 - hypothetical protein identified by Glimmer2%3B putative gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2159 CYA_2160 CYA_2160 CYA_2160 2173121 2173669 - CheW domain protein identified by match to protein family HMM PF01584 gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2160 CYA_2161 CYA_2161 CYA_2161 2173777 2174151 - response regulator identified by similarity to SP:P43501%3B match to protein family HMM PF00072 gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2161 CYA_2162 CYA_2162 CYA_2162 2174199 2175443 - response regulator identified by match to protein family HMM PF00072 gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2162 CYA_2163 CYA_2163 CYA_2163 2175829 2176308 - hydrolase%2C NUDIX family identified by match to protein family HMM PF00293 gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2163 CYA_2164 CYA_2164 CYA_2164 2176315 2177547 - conserved hypothetical protein gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2164 CYA_2165 CYA_2165 CYA_2165 2177602 2177802 - conserved hypothetical protein identified by similarity to PIR:AC2310 gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2165 CYA_2166 CYA_2166 CYA_2166 2177856 2180051 - Piwi domain protein identified by match to protein family HMM PF02171 gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2166 CYA_2167 CYA_2167 CYA_2167 2180122 2180589 - hypothetical protein identified by Glimmer2%3B putative gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2167 CYA_2168 CYA_2168 CYA_2168 2180637 2181737 - putative lipoprotein gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2168 CYA_2169 CYA_2169 nrdJ nrdJ 2181900 2185367 - ribonucleoside-triphosphate reductase%2C adenosylcobalamin-dependent%2C intein-contatining identified by match to protein family HMM TIGR01443%3B match to protein family HMM TIGR01445%3B match to protein family HMM TIGR02505 gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2169 CYA_2170 CYA_2170 CYA_2170 2185700 2186890 + peptidase%2C M50B family identified by match to protein family HMM PF00571%3B match to protein family HMM PF02163 gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2170 CYA_2171 CYA_2171 CYA_2171 2187005 2188312 + peptidase%2C M16B family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2171 CYA_2172 CYA_2172 CYA_2172 2188312 2189625 + peptidase M16B family%2C nonpeptidase-like protein identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2172 CYA_2173 CYA_2173 CYA_2173 2189855 2190574 - putative membrane protein identified by match to protein family HMM PF04474 gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2173 CYA_2174 CYA_2174 CYA_2174 2190749 2191273 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2174 CYA_2175 CYA_2175 CYA_2175 2191277 2191987 + conserved hypothetical protein gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2175 CYA_2176 CYA_2176 CYA_2176 2191994 2192713 - conserved hypothetical protein identified by similarity to PIR:AE1887 gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2176 CYA_2177 CYA_2177 proB proB 2192866 2193981 + glutamate 5-kinase identified by similarity to SP:P07005%3B match to protein family HMM PF00696%3B match to protein family HMM PF01472%3B match to protein family HMM TIGR01027 gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2177 CYA_2178 CYA_2178 CYA_2178 2193986 2195272 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2178 CYA_2179 CYA_2179 gap-3 gap-3 2195310 2196320 - glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2179 CYA_2180 CYA_2180 murI murI 2196566 2197444 - glutamate racemase identified by similarity to SP:P48797%3B match to protein family HMM PF01177%3B match to protein family HMM TIGR00067 gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2180 CYA_2181 CYA_2181 CYA_2181 2197595 2199466 - N-acetylmuramoyl-L-alanine amidase identified by match to protein family HMM PF01520 gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2181 CYA_2182 CYA_2182 CYA_2182 2199575 2200729 + hypothetical protein identified by Glimmer2%3B putative gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2182 CYA_2183 CYA_2183 CYA_2183 2200785 2203076 - starch binding domain protein identified by match to protein family HMM PF00686 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2183 CYA_2184 CYA_2184 CYA_2184 2203378 2204712 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2184 CYA_2185 CYA_2185 miaE miaE 2204738 2205343 - tRNA-(MS[2]IO[6]A)-hydroxylase identified by similarity to SP:Q08015%3B match to protein family HMM PF06175 gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2185 CYA_2186 CYA_2186 CYA_2186 2205545 2206615 - phospho-2-dehydro-3-deoxyheptonate aldolase identified by similarity to SP:P00888%3B match to protein family HMM PF00793%3B match to protein family HMM TIGR00034 gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2186 CYA_2187 CYA_2187 CYA_2187 2207155 2208510 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2187 CYA_2188 CYA_2188 CYA_2188 2208598 2208723 - gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2188 CYA_2189 CYA_2189 sufR sufR 2208774 2209502 - iron-sulfur cluster biosynthesis transcriptional regulator SufR identified by similarity to PIR:S76597%3B match to protein family HMM PF08220%3B match to protein family HMM TIGR02702 gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2189 CYA_2190 CYA_2190 sufB sufB 2209665 2211101 + FeS assembly protein SufB identified by match to protein family HMM PF01458%3B match to protein family HMM TIGR01980 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2190 CYA_2191 CYA_2191 CYA_2191 2211725 2211826 - hypothetical protein identified by Glimmer2%3B putative gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2191 CYA_2192 CYA_2192 mscL mscL 2211346 2211744 + large conductance mechanosensitive channel protein identified by match to protein family HMM PF01741%3B match to protein family HMM TIGR00220 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2192 CYA_2193 CYA_2193 sufC sufC 2211842 2212657 + FeS assembly ATPase SufC identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01978 gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2193 CYA_2194 CYA_2194 sufD sufD 2212654 2213943 + FeS assembly protein SufD identified by match to protein family HMM PF01458%3B match to protein family HMM TIGR01981 gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2194 CYA_2195 CYA_2195 CYA_2195 2214617 2215069 + transcriptional regulator%2C AbrB family identified by match to protein family HMM TIGR01439 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2195 CYA_2196 CYA_2196 CYA_2196 2215206 2216606 + conserved hypothetical protein identified by similarity to PIR:AD2437 gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2196 CYA_2197 CYA_2197 CYA_2197 2216928 2217353 - nodulation efficiency family protein identified by match to protein family HMM PF01957 gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2197 CYA_2198 CYA_2198 CYA_2198 2217437 2217676 - hypothetical protein identified by Glimmer2%3B putative gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2198 CYA_2199 CYA_2199 rrmJ rrmJ 2217989 2219059 - ribosomal RNA large subunit methytransferase J identified by match to protein family HMM PF01728 gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2199 CYA_2200 CYA_2200 CYA_2200 2217819 2218007 + conserved hypothetical protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2200 CYA_2201 CYA_2201 leuD leuD 2219056 2219643 - 3-isopropylmalate dehydratase%2C small subunit identified by similarity to SP:P30126%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR00171 gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2201 CYA_2202 CYA_2202 CYA_2202 2219797 2220123 - conserved hypothetical protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2202 CYA_2203 CYA_2203 CYA_2203 2219606 2219800 + hypothetical protein identified by Glimmer2%3B putative gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2203 CYA_2204 CYA_2204 CYA_2204 2220165 2220512 + conserved hypothetical protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2204 CYA_2205 CYA_2205 CYA_2205 2220509 2220667 + hypothetical protein identified by Glimmer2%3B putative gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2205 CYA_2206 CYA_2206 pyk pyk 2221071 2222912 + pyruvate kinase identified by match to protein family HMM PF00224%3B match to protein family HMM PF00391%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2206 CYA_2207 CYA_2207 CYA_2207 2223017 2223148 + hypothetical protein identified by Glimmer2%3B putative gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2207 CYA_2208 CYA_2208 CYA_2208 2223210 2223746 + conserved domain protein gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2208 CYA_2209 CYA_2209 CYA_2209 2223876 2224611 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2209 CYA_2210 CYA_2210 CYA_2210 2224764 2225393 + BioY family protein identified by match to protein family HMM PF02632 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2210 CYA_2211 CYA_2211 CYA_2211 2226166 2226342 - conserved hypothetical protein gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2211 CYA_2212 CYA_2212 CYA_2212 2226777 2227883 - conserved hypothetical protein gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2212 CYA_2213 CYA_2213 CYA_2213 2228071 2228433 + conserved hypothetical protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2213 CYA_2214 CYA_2214 rpmB rpmB 2228458 2228694 + ribosomal protein L28 identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009 gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2214 CYA_2215 CYA_2215 CYA_2215 2228768 2229514 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2215 CYA_2216 CYA_2216 gshB gshB 2229715 2230662 + glutathione synthase identified by match to protein family HMM PF02951%3B match to protein family HMM PF02955%3B match to protein family HMM TIGR01380 gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2216 CYA_2217 CYA_2217 CYA_2217 2231060 2233144 - sensor histidine kinase identified by match to protein family HMM PF02518%3B match to protein family HMM PF05226 gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2217 CYA_2218 CYA_2218 pnpA pnpA 2233250 2235388 - polyribonucleotide nucleotidyltransferase identified by similarity to SP:P50849%3B match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726 gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2218 CYA_2219 CYA_2219 CYA_2219 2235540 2235965 + putative arylamine N-acetyltransferase%2C truncation identified by similarity to GB:BAB51429.1 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2219 CYA_2220 CYA_2220 CYA_2220 2235978 2237278 - ISSoc3%2C orfB transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2220 CYA_2221 CYA_2221 CYA_2221 2237234 2237710 + ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2221 CYA_2222 CYA_2222 CYA_2222 2237805 2238347 + putative N-hydroxyarylamine O-acetyltransferase%2C truncation identified by similarity to GB:CAF05656.1 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2222 CYA_2223 CYA_2223 leuA leuA 2238391 2240031 + 2-isopropylmalate synthase identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR00973 gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2223 CYA_2224 CYA_2224 CYA_2224 2240056 2241087 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2224 CYA_2225 CYA_2225 apcC apcC 2241220 2241423 - phycobilisome 7.8 kDa linker polypeptide%2C allophycocyanin-associated%2C core identified by match to protein family HMM PF01383 gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2225 CYA_2226 CYA_2226 apcB-2 apcB-2 2241564 2242049 - allophycocyanin%2C beta subunit identified by match to protein family HMM PF00502%3B match to protein family HMM TIGR01337 gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2226 CYA_2227 CYA_2227 apcA apcA 2242110 2242595 - allophycocyanin%2C alpha subunit identified by match to protein family HMM PF00502 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2227 CYA_2228 CYA_2228 CYA_2228 2242917 2243624 - conserved domain protein gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2228 CYA_2229 CYA_2229 CYA_2229 2244162 2245424 + peptidase%2C S1C (protease Do) family identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595 gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2229 CYA_2230 CYA_2230 CYA_2230 2245576 2246475 + quaternary amine uptake ABC transporter (QAT) family%2C substrate-binding protein identified by similarity to SP:O32243%3B match to protein family HMM PF04069 gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2230 CYA_2231 CYA_2231 CYA_2231 2246497 2247465 + quaternary amine uptake ABC transporter (QAT) family%2C ATP-binding protein identified by similarity to SP:O34992%3B match to protein family HMM PF00005 gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2231 CYA_2232 CYA_2232 CYA_2232 2247462 2248079 + quaternary amine uptake ABC transporter (QAT) family%2C permease protein identified by match to protein family HMM PF00528 gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2232 CYA_2233 CYA_2233 CYA_2233 2248277 2248867 + RNA polymerase sigma factor%2C ECF family identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR01199 gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2233 CYA_2234 CYA_2234 CYA_2234 2248888 2249655 + conserved hypothetical protein gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2234 CYA_2235 CYA_2235 CYA_2235 2249700 2250320 + VanW family protein gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2235 CYA_2236 CYA_2236 ubiE ubiE 2250414 2251124 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE identified by similarity to SP:P27851%3B match to protein family HMM PF01209%3B match to protein family HMM TIGR01934 gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2236 CYA_2237 CYA_2237 CYA_2237 2251176 2251874 - conserved hypothetical protein identified by similarity to GB:BAC07624.1 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2237 CYA_2238 CYA_2238 CYA_2238 2252019 2252297 - hypothetical protein identified by Glimmer2%3B putative gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2238 CYA_2239 CYA_2239 CYA_2239 2252345 2252968 - putative chloramphenicol acetyltransferase identified by match to protein family HMM PF00132 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2239 CYA_2240 CYA_2240 CYA_2240 2253148 2253711 + putatitve bifunctional adenosylcobalamin biosynthesis protein CobU identified by match to protein family HMM PF02283 gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2240 CYA_2241 CYA_2241 CYA_2241 2253781 2254269 + conserved hypothetical protein gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2241 CYA_2242 CYA_2242 CYA_2242 2254275 2254811 + hypothetical protein identified by Glimmer2%3B putative gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2242 CYA_2243 CYA_2243 CYA_2243 2254932 2255552 - putative phosphatidylethanolamine-binding protein identified by match to protein family HMM PF01161%3B match to protein family HMM TIGR00481 gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2243 CYA_2244 CYA_2244 CYA_2244 2255503 2255590 - tRNA-Ser tRNA gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2244 CYA_2245 CYA_2245 CYA_2245 2255670 2256086 - conserved hypothetical protein identified by similarity to GB:BAC90426.1 gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2245 CYA_2246 CYA_2246 CYA_2246 2256083 2256880 - conserved hypothetical protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2246 CYA_2247 CYA_2247 CYA_2247 2256885 2258225 - tldD/pmbA family protein identified by match to protein family HMM PF01523 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2247 CYA_2248 CYA_2248 CYA_2248 2258238 2258726 - conserved hypothetical protein%2C truncation gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2248 CYA_2249 CYA_2249 CYA_2249 2258727 2260007 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2249 CYA_2250 CYA_2250 CYA_2250 2259862 2260479 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2250 CYA_2251 CYA_2251 CYA_2251 2260534 2260992 - conserved domain protein gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2251 CYA_2252 CYA_2252 CYA_2252 2261008 2262468 - peptidase%2C U62 family identified by match to protein family HMM PF01523 gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2252 CYA_2253 CYA_2253 CYA_2253 2262759 2263379 + uracil-DNA glycosylase%2C family 4 identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00758 gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2253 CYA_2254 CYA_2254 CYA_2254 2263460 2264308 - cyclopropane-fatty-acyl-phospholipid synthase family protein identified by match to protein family HMM PF01209%3B match to protein family HMM PF02353 gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2254 CYA_2255 CYA_2255 CYA_2255 2264334 2264471 - hypothetical protein identified by Glimmer2%3B putative gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2255 CYA_2256 CYA_2256 CYA_2256 2264431 2266038 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2256 CYA_2257 CYA_2257 rbsK rbsK 2266059 2266988 - ribokinase identified by similarity to SP:P05054%3B match to protein family HMM PF00294%3B match to protein family HMM TIGR02152 gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2257 CYA_2258 CYA_2258 CYA_2258 2267109 2267420 + conserved hypothetical protein identified by similarity to SP:Q8YU66%3B match to protein family HMM PF01906 gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2258 CYA_2259 CYA_2259 CYA_2259 2267426 2268175 - conserved hypothetical protein TIGR01033 identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033 gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2259 CYA_2260 CYA_2260 CYA_2260 2268271 2269023 - hypothetical protein identified by Glimmer2%3B putative gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2260 CYA_2261 CYA_2261 CYA_2261 2268264 2268362 + hypothetical protein identified by Glimmer2%3B putative gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2261 CYA_2262 CYA_2262 CYA_2262 2269929 2272094 - protein kinase identified by similarity to GB:AAL58474.1%3B match to protein family HMM PF00069 gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2262 CYA_2263 CYA_2263 CYA_2263 2269213 2269932 + hypothetical protein identified by Glimmer2%3B putative gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2263 CYA_2264 CYA_2264 CYA_2264 2272522 2273481 + NAD(+)/NADH kinase identified by match to protein family HMM PF01513 gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2264 CYA_2265 CYA_2265 CYA_2265 2273668 2274876 - conserved hypothetical protein identified by similarity to GB:CAD78920.1%3B match to protein family HMM PF01882 gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2265 CYA_2266 CYA_2266 CYA_2266 2274972 2276132 - DegT/DnrJ/EryC1/StrS aminotransferase family protein identified by match to protein family HMM PF01041%3B match to protein family HMM PF01212 gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2266 CYA_2267 CYA_2267 CYA_2267 2276671 2277645 + heptosyltransferase family protein identified by match to protein family HMM PF01075 gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2267 CYA_2268 CYA_2268 CYA_2268 2277877 2277957 - tRNA-Leu tRNA gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2268 CYA_2269 CYA_2269 CYA_2269 2278032 2279024 - peptidase%2C M23B family identified by match to protein family HMM PF01551 gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2269 CYA_2270 CYA_2270 CYA_2270 2279028 2279849 - biotin--acetyl-CoA-carboxylase ligase identified by similarity to SP:P42975%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00121 gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2270 CYA_2271 CYA_2271 CYA_2271 2279868 2280500 - conserved hypothetical protein identified by similarity to PIR:AI2367 gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2271 CYA_2272 CYA_2272 pdxJ pdxJ 2280497 2281234 - pyridoxal phosphate biosynthetic protein PdxJ identified by match to protein family HMM PF03740%3B match to protein family HMM TIGR00559 gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2272 CYA_2273 CYA_2273 CYA_2273 2281403 2282470 + putative general secretory pathway protein gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2273 CYA_2274 CYA_2274 CYA_2274 2282600 2282914 - hypothetical protein identified by Glimmer2%3B putative gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2274 CYA_2275 CYA_2275 lepB lepB 2283075 2283761 + signal peptidase I identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2275 CYA_2276 CYA_2276 sds sds 2283777 2284748 - solanesyl diphosphate synthase identified by similarity to SP:P72580%3B match to protein family HMM PF00348%3B match to protein family HMM TIGR02749 gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2276 CYA_2277 CYA_2277 CYA_2277 2284760 2285257 + conserved hypothetical protein identified by similarity to PIR:S76074%3B match to protein family HMM PF02583 gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2277 CYA_2278 CYA_2278 CYA_2278 2285309 2285746 - conserved domain protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2278 CYA_2279 CYA_2279 rpsP rpsP 2285985 2286452 + ribosomal protein S16 identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002 gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2279 CYA_2280 CYA_2280 CYA_2280 2286516 2286776 + conserved hypothetical protein gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2280 CYA_2281 CYA_2281 CYA_2281 2286773 2287876 + conserved hypothetical protein gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2281 CYA_2282 CYA_2282 hisF hisF 2287904 2288665 + imidazoleglycerol phosphate synthase%2C cyclase subunit identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735 gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2282 CYA_2283 CYA_2283 cysQ cysQ 2288683 2289480 + 3'(2')%2C5'-bisphosphate nucleotidase identified by match to protein family HMM PF00459%3B match to protein family HMM TIGR01331 gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2283 CYA_2284 CYA_2284 CYA_2284 2289492 2289956 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2284 CYA_2285 CYA_2285 CYA_2285 2290125 2290898 - pspA/IM30 family protein identified by match to protein family HMM PF04012 gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2285 CYA_2286 CYA_2286 CYA_2286 2291299 2291421 + mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2286 CYA_2287 CYA_2287 CYA_2287 2291451 2291522 - tRNA-Val tRNA gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2287 CYA_2288 CYA_2288 CYA_2288 2291664 2291807 + hypothetical protein identified by Glimmer2%3B putative gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2288 CYA_2289 CYA_2289 CYA_2289 2291817 2293013 - Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2289 CYA_2290 CYA_2290 CYA_2290 2293258 2293686 + transcriptional regulator%2C Fur family identified by match to protein family HMM PF01475 gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2290 CYA_2291 CYA_2291 CYA_2291 2293751 2295856 - conserved hypothetical protein identified by similarity to PIR:AB1961%3B match to protein family HMM PF03190 gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2291 CYA_2292 CYA_2292 CYA_2292 2295979 2296602 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2292 CYA_2293 CYA_2293 CYA_2293 2296553 2297020 - putative cyclase/dehydrase identified by match to protein family HMM PF03364 gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2293 CYA_2294 CYA_2294 CYA_2294 2298079 2298411 - antibiotic biosynthesis monooxygenase domain protein identified by match to protein family HMM PF03992 gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2294 CYA_2295 CYA_2295 CYA_2295 2297213 2298082 + conserved hypothetical protein identified by similarity to PIR:AC2026%3B match to protein family HMM PF04367 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2295 CYA_2296 CYA_2296 aroA aroA 2298436 2299770 - 3-phosphoshikimate 1-carboxyvinyltransferase identified by similarity to SP:P20691%3B match to protein family HMM PF00275%3B match to protein family HMM TIGR01356 gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2296 CYA_2297 CYA_2297 mraW mraW 2300104 2301033 + S-adenosyl-methyltransferase MraW identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006 gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2297 CYA_2298 CYA_2298 CYA_2298 2301671 2302414 - response regulator identified by match to protein family HMM PF00072 gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2298 CYA_2299 CYA_2299 CYA_2299 2301138 2301674 + conserved hypothetical protein identified by similarity to GB:BAD79226.1 gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2299 CYA_2300 CYA_2300 tyrA tyrA 2302545 2303405 - prephenate dehydrogenase identified by similarity to SP:P20692%3B match to protein family HMM PF02153%3B match to protein family HMM PF02254%3B match to protein family HMM PF02558%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807 gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2300 CYA_2301 CYA_2301 CYA_2301 2303622 2304125 + conserved hypothetical protein gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2301 CYA_2302 CYA_2302 scpA scpA 2304173 2304928 - segregation and condensation protein A identified by match to protein family HMM PF02616 gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2302 CYA_2303 CYA_2303 CYA_2303 2305106 2305177 + tRNA-Val tRNA gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2303 CYA_2304 CYA_2304 CYA_2304 2305896 2306984 - glucose/sorbosone dehydrogenase family protein identified by match to protein family HMM PF07995 gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2304 CYA_2305 CYA_2305 CYA_2305 2309629 2310096 - antioxidant%2C AhpC/TSA family identified by match to protein family HMM PF00578 gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2305 CYA_2306 CYA_2306 CYA_2306 2307197 2309632 + glycosyl hydrolase%2C family 31 identified by match to protein family HMM PF01055 gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2306 CYA_2307 CYA_2307 rrsB rrsB 2310397 2311720 + 16S ribosomal RNA rRNA gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2307 CYA_2308 CYA_2308 CYA_2308 2311966 2312039 + tRNA-Ile tRNA gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2308 CYA_2309 CYA_2309 CYA_2309 2312076 2312151 + tRNA-Ala tRNA gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2309 CYA_2310 CYA_2310 rrlB rrlB 2312276 2315082 + 23S ribosomal RNA rRNA gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2310 CYA_2311 CYA_2311 rrfB rrfB 2315141 2315260 + 5S ribosomal RNA rRNA gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2311 CYA_2312 CYA_2312 CYA_2312 2315321 2315851 - response regulator identified by match to protein family HMM PF00072 gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2312 CYA_2313 CYA_2313 CYA_2313 2315836 2317419 - conserved hypothetical protein gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2313 CYA_2314 CYA_2314 CYA_2314 2317558 2317836 - hypothetical protein identified by Glimmer2%3B putative gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2314 CYA_2315 CYA_2315 CYA_2315 2318279 2319127 + ABC transporter%2C ATP-binding protein <%3D42%25 ID to ATP binding proteins of the following ABC transporter families: 3.A.1.102. The Lipooligosaccharide Exporter (LOSE) Family%2C 3.A.1.105. The Drug Exporter-1 (DrugE1) Family and 3.A.1.211. The Cholesterol/Phospholipid/Retinal (CPR) Flippase Family (ABCA)%3B identified by match to protein family HMM PF00005 gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2315 CYA_2316 CYA_2316 CYA_2316 2319170 2319889 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2316 CYA_2317 CYA_2317 CYA_2317 2320184 2320645 + hypothetical protein identified by Glimmer2%3B putative gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2317 CYA_2318 CYA_2318 CYA_2318 2320813 2321619 + conserved domain protein gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2318 CYA_2319 CYA_2319 CYA_2319 2321826 2322668 + conserved hypothetical protein identified by similarity to GB:BAC08972.1 gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2319 CYA_2320 CYA_2320 CYA_2320 2322726 2323265 + conserved hypothetical protein gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2320 CYA_2321 CYA_2321 CYA_2321 2323268 2323912 + putative cobalamin biosynthesis protein CbiM identified by match to protein family HMM PF01891 gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2321 CYA_2322 CYA_2322 cbiQ cbiQ 2323899 2324714 + cobalt ABC transporter%2C permease protein CbiQ identified by match to protein family HMM PF02361%3B match to protein family HMM TIGR02454 gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2322 CYA_2323 CYA_2323 yliG yliG 2324913 2326232 + MiaB tRNA modifying enzyme-like protein identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01125 gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2323 CYA_2324 CYA_2324 pdxA pdxA 2326912 2327961 - 4-hydroxythreonine-4-phosphate dehydrogenase identified by match to protein family HMM PF04166%3B match to protein family HMM TIGR00557 gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2324 CYA_2325 CYA_2325 rpiA rpiA 2326263 2326955 + ribose 5-phosphate isomerase A identified by match to protein family HMM PF06026%3B match to protein family HMM TIGR00021 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2325 CYA_2326 CYA_2326 CYA_2326 2329476 2330453 + putative dehydrogenase%2C E1 component%2C beta subunit identified by similarity to SP:P51266%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2326 CYA_2327 CYA_2327 CYA_2327 2330706 2331320 - transporter%2C small conductance mechanosensitive ion channel (MscS) family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF00924 pseudogene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2327 CYA_2328 CYA_2328 CYA_2328 2331574 2332773 + oxidoreductase%2C FAD-binding identified by match to protein family HMM PF01266 gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2328 CYA_2329 CYA_2329 dnaG dnaG 2332788 2334683 - DNA primase identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM TIGR01391 gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2329 CYA_2330 CYA_2330 petJ petJ 2334829 2335176 + cytochrome c6 identified by similarity to SP:P28596%3B match to protein family HMM PF00034 gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2330 CYA_2331 CYA_2331 CYA_2331 2335176 2335523 + conserved hypothetical protein gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2331 CYA_2332 CYA_2332 CYA_2332 2335568 2336134 + nuclear export factor GLE1-like protein identified by match to protein family HMM PF07987 gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2332 CYA_2333 CYA_2333 CYA_2333 2337765 2340623 - protein kinase domain/TPR repeat protein identified by match to protein family HMM PF00069%3B match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2333 CYA_2334 CYA_2334 copCD copCD 2336152 2337768 + copper resistance protein C/D identified by match to protein family HMM PF04234 gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2334 CYA_2335 CYA_2335 CYA_2335 2340708 2341106 - conserved hypothetical protein identified by similarity to PIR:AF2318 gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2335 CYA_2336 CYA_2336 CYA_2336 2341359 2342393 + response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00277 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2336 CYA_2337 CYA_2337 CYA_2337 2342432 2342749 + conserved hypothetical protein identified by similarity to GB:BAD80264.1%3B match to protein family HMM PF04296 gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2337 CYA_2338 CYA_2338 infB infB 2343138 2346233 + translation initiation factor IF-2 identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487 gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2338 CYA_2339 CYA_2339 proS proS 2346336 2348165 + prolyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00409 gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2339 CYA_2340 CYA_2340 CYA_2340 2348187 2348804 + conserved hypothetical protein gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2340 CYA_2341 CYA_2341 CYA_2341 2348801 2349076 + conserved hypothetical protein gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2341 CYA_2342 CYA_2342 CYA_2342 2349173 2350231 - conserved domain protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2342 CYA_2343 CYA_2343 CYA_2343 2350437 2350862 - ISSoc1%2C transposase%2C truncation identified by match to protein family HMM PF07282 gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2343 CYA_2344 CYA_2344 CYA_2344 2350926 2351390 - hypothetical protein identified by Glimmer2%3B putative gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2344 CYA_2345 CYA_2345 CYA_2345 2351600 2351728 + hypothetical protein identified by Glimmer2%3B putative gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2345 CYA_2346 CYA_2346 tkt tkt 2352095 2354095 - transketolase identified by match to protein family HMM PF00456%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00232 gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2346 CYA_2347 CYA_2347 lipA-3 lipA-3 2354507 2355397 + lipoic acid synthetase identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00510 gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2347 CYA_2348 CYA_2348 CYA_2348 2356031 2356699 - transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2348 CYA_2349 CYA_2349 CYA_2349 2357019 2357912 + fatty acid desaturase identified by match to protein family HMM PF00487 gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2349 CYA_2350 CYA_2350 CYA_2350 2358244 2358513 - conserved hypothetical protein gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2350 CYA_2351 CYA_2351 CYA_2351 2358672 2358935 - transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196 gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2351 CYA_2352 CYA_2352 CYA_2352 2359086 2360345 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2352 CYA_2353 CYA_2353 CYA_2353 2360426 2361190 - oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2353 CYA_2354 CYA_2354 CYA_2354 2361370 2362664 - ISSoc3%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM TIGR01766 pseudogene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2354 CYA_2355 CYA_2355 CYA_2355 2362620 2363096 + ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2355 CYA_2356 CYA_2356 panE-2 panE-2 2363124 2364110 - 2-dehydropantoate 2-reductase identified by match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00745 gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2356 CYA_2357 CYA_2357 petM petM 2364133 2364240 - cytochrome b6-f complex%2C subunit VII identified by similarity to SP:Q8DJ15 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2357 CYA_2358 CYA_2358 psbD-1 psbD-1 2364734 2365792 + photosystem II protein D2 identified by match to protein family HMM PF00124%3B match to protein family HMM TIGR01152 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2358 CYA_2359 CYA_2359 psbC psbC 2365935 2367356 + photosystem II 44 kDa subunit reaction center protein identified by match to protein family HMM PF00421%3B match to protein family HMM TIGR01153 gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2359 CYA_2360 CYA_2360 cobW cobW 2367488 2368546 + cobalamin biosynthesis protein CobW identified by match to protein family HMM PF02492%3B match to protein family HMM PF07683%3B match to protein family HMM TIGR02475 gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2360 CYA_2361 CYA_2361 CYA_2361 2368608 2369564 - NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2361 CYA_2362 CYA_2362 CYA_2362 2369787 2370812 + OppBC ABC transporter family%2C permease protein identified by similarity to SP:P42062%3B match to protein family HMM PF00528 gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2362 CYA_2363 CYA_2363 CYA_2363 2370850 2373006 + conserved hypothetical protein gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2363 CYA_2364 CYA_2364 CYA_2364 2373011 2373751 - hypothetical protein identified by Glimmer2%3B putative gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2364 CYA_2365 CYA_2365 fabD fabD 2373876 2374745 - malonyl CoA-acyl carrier protein transacylase identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128 gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2365 CYA_2366 CYA_2366 fabH fabH 2374765 2375772 - 3-oxoacyl-(acyl-carrier-protein) synthase III identified by match to protein family HMM PF02797%3B match to protein family HMM TIGR00747 gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2366 CYA_2367 CYA_2367 plsX plsX 2375778 2376869 - fatty acid/phospholipid synthesis protein PlsX identified by match to protein family HMM PF02504%3B match to protein family HMM TIGR00182 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2367 CYA_2368 CYA_2368 CYA_2368 2377352 2379085 - conserved hypothetical protein gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2368 CYA_2369 CYA_2369 trpC trpC 2379498 2380418 + indole-3-glycerol phosphate synthase identified by match to protein family HMM PF00218 gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2369 CYA_2370 CYA_2370 CYA_2370 2380459 2380698 + conserved hypothetical protein gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2370 CYA_2371 CYA_2371 CYA_2371 2380763 2380957 + copper metallochaperone identified by similarity to PDB:1SB6_A gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2371 CYA_2372 CYA_2372 CYA_2372 2381068 2383401 + copper-translocating P-type ATPase identified by similarity to SP:P37279%3B match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2372 CYA_2373 CYA_2373 cbiX cbiX 2383610 2384638 + sirohydrochlorin cobaltochelatase identified by similarity to SP:O87690%3B similarity to SP:Q55451%3B match to protein family HMM PF01903 gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2373 CYA_2374 CYA_2374 CYA_2374 2385640 2386257 - PAP/fibrillin family protein identified by match to protein family HMM PF04755 gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2374 CYA_2375 CYA_2375 CYA_2375 2384822 2385643 + hypothetical protein identified by Glimmer2%3B putative gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2375 CYA_2376 CYA_2376 CYA_2376 2386313 2387020 - Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2376 CYA_2377 CYA_2377 CYA_2377 2387042 2387377 - conserved hypothetical protein identified by similarity to PIR:AH2287 gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2377 CYA_2378 CYA_2378 CYA_2378 2387352 2388509 - GTP-binding protein%2C GTP1/OBG family identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR02729 gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2378 CYA_2379 CYA_2379 rpsA rpsA 2388710 2389681 + ribosomal protein S1 identified by similarity to SP:P46228%3B match to protein family HMM PF00575 gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2379 CYA_2380 CYA_2380 CYA_2380 2389689 2389793 + hypothetical protein identified by Glimmer2%3B putative gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2380 CYA_2381 CYA_2381 CYA_2381 2389808 2391094 + site-specific recombinase%2C resolvase family identified by match to protein family HMM PF07508 gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2381 CYA_2382 CYA_2382 chlL chlL 2391460 2392311 + light-independent protochlorophyllide reductase%2C iron-sulfur ATP-binding protein identified by match to protein family HMM PF00142%3B match to protein family HMM TIGR01281 gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2382 CYA_2383 CYA_2383 CYA_2383 2392470 2393447 + light-dependent protochlorophyllide reductase identified by match to protein family HMM PF00106%3B match to protein family HMM TIGR01289 gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2383 CYA_2384 CYA_2384 CYA_2384 2394874 2395110 - hypothetical protein identified by Glimmer2%3B putative gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2384 CYA_2385 CYA_2385 chlN chlN 2393477 2394877 + light-independent protochlorophyllide reductase%2C N subunit identified by match to protein family HMM TIGR01279 gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2385 CYA_2386 CYA_2386 hemL hemL 2395186 2396496 - glutamate-1-semialdehyde-2%2C1-aminomutase identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00713 gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2386 CYA_2387 CYA_2387 ispG ispG 2396575 2397813 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2387 CYA_2388 CYA_2388 CYA_2388 2398539 2399060 - conserved hypothetical protein identified by similarity to PIR:S77403%3B match to protein family HMM PF02577 gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2388 CYA_2389 CYA_2389 CYA_2389 2399908 2400264 - putative single-strand binding protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2389 CYA_2390 CYA_2390 cobK cobK 2399147 2399950 + precorrin-6x reductase identified by match to protein family HMM PF02571%3B match to protein family HMM TIGR00715 gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2390 CYA_2391 CYA_2391 CYA_2391 2400637 2402787 + NADH-ubiquinone/plastoquinone oxidoreductase%2C F subunit identified by similarity to SP:Q55429%3B match to protein family HMM PF00361%3B match to protein family HMM PF00662%3B match to protein family HMM TIGR01974 gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2391 CYA_2392 CYA_2392 CYA_2392 2402868 2403461 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2392 CYA_2393 CYA_2393 CYA_2393 2403316 2404596 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2393 CYA_2394 CYA_2394 CYA_2394 2405090 2405869 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2394 CYA_2395 CYA_2395 fni fni 2405868 2407043 + isopentenyl-diphosphate delta-isomerase%2C type 2 identified by match to protein family HMM PF00478%3B match to protein family HMM PF01070%3B match to protein family HMM PF01645%3B match to protein family HMM TIGR02151 gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2395 CYA_2396 CYA_2396 CYA_2396 2407304 2408917 - conserved hypothetical protein gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2396 CYA_2397 CYA_2397 CYA_2397 2409055 2409127 - tRNA-Thr tRNA gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2397 CYA_2398 CYA_2398 CYA_2398 2409118 2409318 - hypothetical protein identified by Glimmer2%3B putative gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2398 CYA_2399 CYA_2399 CYA_2399 2409290 2409985 - conserved hypothetical protein identified by similarity to GB:BAD78649.1 gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2399 CYA_2400 CYA_2400 CYA_2400 2410282 2410488 + hypothetical protein identified by Glimmer2%3B putative gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2400 CYA_2401 CYA_2401 CYA_2401 2410355 2412211 + peptidase%2C S8A (subtilisin) family identified by similarity to GB:AAD48483.1%3B match to protein family HMM PF00082 gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2401 CYA_2402 CYA_2402 CYA_2402 2412211 2412432 + conserved hypothetical protein gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2402 CYA_2403 CYA_2403 CYA_2403 2412534 2412893 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2403 CYA_2404 CYA_2404 CYA_2404 2413371 2414484 + phosphofructokinase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:O08333%3B match to protein family HMM PF00365 pseudogene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2404 CYA_2405 CYA_2405 CYA_2405 2414646 2415662 - putative adenylate cyclase identified by match to protein family HMM PF00211%3B match to protein family HMM PF00498 gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2405 CYA_2406 CYA_2406 CYA_2406 2415796 2416281 + conserved hypothetical protein identified by similarity to GB:BAC88790.1%3B match to protein family HMM PF06799 gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2406 CYA_2407 CYA_2407 ribF ribF 2416329 2417261 + riboflavin biosynthesis protein RibF identified by match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083 gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2407 CYA_2408 CYA_2408 cobS cobS 2417309 2418088 - cobalamin 5'-phosphate synthase identified by match to protein family HMM PF02654%3B match to protein family HMM TIGR00317 gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2408 CYA_2409 CYA_2409 CYA_2409 2418121 2418465 - conserved hypothetical protein identified by similarity to GB:BAC88059.1 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2409 CYA_2410 CYA_2410 rpoD rpoD 2418526 2419740 - RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393 gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2410 CYA_2411 CYA_2411 metH metH 2420392 2424051 + methionine synthase identified by match to protein family HMM PF00809%3B match to protein family HMM PF02310%3B match to protein family HMM PF02574%3B match to protein family HMM PF02607%3B match to protein family HMM PF02965%3B match to protein family HMM TIGR02082 gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2411 CYA_2412 CYA_2412 potC potC 2424056 2424829 - spermidine/putrescine ABC transporter%2C permease protein PotC identified by similarity to SP:P23859%3B match to protein family HMM PF00528 gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2412 CYA_2413 CYA_2413 CYA_2413 2425128 2425949 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2413 CYA_2414 CYA_2414 CYA_2414 2426047 2426199 - hypothetical protein identified by Glimmer2%3B putative gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2414 CYA_2415 CYA_2415 CYA_2415 2426212 2426688 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2415 CYA_2416 CYA_2416 CYA_2416 2426644 2427944 + ISSoc3%2C orfB transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2416 CYA_2417 CYA_2417 CYA_2417 2427961 2428911 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2417 CYA_2418 CYA_2418 CYA_2418 2429181 2429828 - hypothetical protein identified by Glimmer2%3B putative gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2418 CYA_2419 CYA_2419 yqeG yqeG 2430090 2430578 - phosphatase%2C HAD superfamily%2C subfamily IIIA identified by match to protein family HMM TIGR01662%3B match to protein family HMM TIGR01668 gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2419 CYA_2420 CYA_2420 CYA_2420 2430622 2431743 - conserved hypothetical protein TIGR00247 identified by similarity to GB:CAG37649.1%3B match to protein family HMM PF02618%3B match to protein family HMM TIGR00247 gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2420 CYA_2421 CYA_2421 pyrH pyrH 2431864 2432628 - uridylate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075 gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2421 CYA_2422 CYA_2422 CYA_2422 2432727 2432879 - conserved hypothetical protein identified by similarity to PIR:S77143 gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2422 CYA_2423 CYA_2423 CYA_2423 2432987 2433358 - conserved domain protein identified by match to protein family HMM PF01169 gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2423 CYA_2424 CYA_2424 CYA_2424 2433346 2434626 - ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2424 CYA_2425 CYA_2425 CYA_2425 2434481 2435074 - ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2425 CYA_2426 CYA_2426 CYA_2426 2435425 2436376 - ISSoc1%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2426 CYA_2427 CYA_2427 psbJ psbJ 2436836 2436955 - photosystem II reaction center protein PsbJ identified by similarity to SP:P59087%3B match to protein family HMM PF01788 gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2427 CYA_2428 CYA_2428 psbL psbL 2437096 2437221 - photosystem II reaction center protein PsbL identified by match to protein family HMM PF02419 gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2428 CYA_2429 CYA_2429 psbF psbF 2437227 2437370 - cytochrome b559%2C beta subunit identified by match to protein family HMM PF00283%3B match to protein family HMM TIGR01333 gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2429 CYA_2430 CYA_2430 psbE psbE 2437454 2437699 - cytochrome b559%2C alpha subunit identified by match to protein family HMM PF00283%3B match to protein family HMM PF00284%3B match to protein family HMM TIGR01332 gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2430 CYA_2431 CYA_2431 CYA_2431 2438016 2439716 + S-layer domain protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2431 CYA_2432 CYA_2432 CYA_2432 2440022 2441761 - putative exopolyphosphatase identified by similarity to GB:AAD29107.1%3B match to protein family HMM PF01966%3B match to protein family HMM PF02541 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2432 CYA_2433 CYA_2433 thrS thrS 2441939 2443750 + threonyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418 gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2433 CYA_2434 CYA_2434 CYA_2434 2443789 2444127 + carbohydrate uptake ABC transporter-2 (CUT2) family%2C ATP-binding protein%2C internal deletion gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2434 CYA_2435 CYA_2435 CYA_2435 2444148 2445353 + acetamidase/formamidase family protein identified by match to protein family HMM PF03069 gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2435 CYA_2436 CYA_2436 malQ malQ 2447528 2449129 - 4-alpha-glucanotransferase identified by match to protein family HMM PF02446%3B match to protein family HMM TIGR00217 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2436 CYA_2437 CYA_2437 CYA_2437 2445984 2447531 + carbohydrate uptake ABC transporter 2 (CUT2) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2437 CYA_2438 CYA_2438 pyrE pyrE 2449285 2449941 - orotate phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR00336 gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2438 CYA_2439 CYA_2439 CYA_2439 2450193 2450786 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2439 CYA_2440 CYA_2440 CYA_2440 2450641 2451921 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2440 CYA_2441 CYA_2441 CYA_2441 2451933 2452448 - transcriptional regulator%2C MarR family identified by match to protein family HMM PF01047 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2441 CYA_2442 CYA_2442 CYA_2442 2452624 2452761 - hypothetical protein identified by Glimmer2%3B putative gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2442 CYA_2443 CYA_2443 CYA_2443 2454051 2454224 - hypothetical protein identified by Glimmer2%3B putative gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2443 CYA_2444 CYA_2444 CYA_2444 2452833 2454146 + conserved hypothetical protein gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2444 CYA_2445 CYA_2445 yfiA yfiA 2454482 2455057 - ribosomal subunit interface protein identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741 gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2445 CYA_2446 CYA_2446 CYA_2446 2455787 2457031 + aluminium resistance protein identified by similarity to GB:AAB99854.1%3B match to protein family HMM PF01053%3B match to protein family HMM PF01212%3B match to protein family HMM PF06838 gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2446 CYA_2447 CYA_2447 CYA_2447 2457021 2457923 + hypothetical protein identified by Glimmer2%3B putative gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2447 CYA_2448 CYA_2448 CYA_2448 2458260 2458475 + conserved hypothetical protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2448 CYA_2449 CYA_2449 CYA_2449 2458518 2458820 + putative membrane protein identified by match to protein family HMM PF03647 gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2449 CYA_2450 CYA_2450 CYA_2450 2458904 2459488 - S-layer domain protein identified by similarity to GB:CAA62019.1 gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2450 CYA_2451 CYA_2451 CYA_2451 2459537 2459743 - hypothetical protein identified by Glimmer2%3B putative gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2451 CYA_2452 CYA_2452 CYA_2452 2460170 2460364 - hypothetical protein identified by Glimmer2%3B putative gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2452 CYA_2453 CYA_2453 CYA_2453 2459752 2460189 + tetratricopeptide repeat family protein identified by match to protein family HMM PF07719 gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2453 CYA_2454 CYA_2454 thrC-2 thrC-2 2460477 2461535 - threonine synthase identified by similarity to SP:P04990%3B match to protein family HMM PF00291%3B match to protein family HMM TIGR00260 gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2454 CYA_2455 CYA_2455 CYA_2455 2461689 2463218 - isochorismate synthase identified by match to protein family HMM PF00425%3B match to protein family HMM TIGR00543 gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2455 CYA_2456 CYA_2456 menA menA 2463470 2464447 + 1%2C4-dihydroxy-2-naphthoate phytyltransferase identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR02235 gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2456 CYA_2457 CYA_2457 CYA_2457 2464589 2466427 + hypothetical protein identified by Glimmer2%3B putative gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2457 CYA_2458 CYA_2458 CYA_2458 2466505 2467683 + putative membrane protein%2C YjgP/YjgQ family identified by match to protein family HMM PF03739 gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2458 CYA_2459 CYA_2459 CYA_2459 2467680 2471015 + hypothetical protein identified by Glimmer2%3B putative gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2459 CYA_2460 CYA_2460 CYA_2460 2471113 2472348 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2460 CYA_2461 CYA_2461 CYA_2461 2472469 2473437 + oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408 gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2461 CYA_2462 CYA_2462 CYA_2462 2473466 2474020 - putative iron-sulfur cluster-binding protein identified by similarity to PIR:JC7085 gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2462 CYA_2463 CYA_2463 CYA_2463 2474013 2474291 - conserved hypothetical protein identified by similarity to PIR:AB1982 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2463 CYA_2464 CYA_2464 CYA_2464 2474426 2474977 - dps protein identified by similarity to SP:Q55024%3B match to protein family HMM PF00210 gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2464 CYA_2465 CYA_2465 CYA_2465 2475226 2476479 + GTP-binding protein identified by match to protein family HMM PF01926 gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2465 CYA_2466 CYA_2466 CYA_2466 2476487 2477509 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2466 CYA_2467 CYA_2467 CYA_2467 2477559 2478521 - Hsp33 family protein identified by match to protein family HMM PF01430 gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2467 CYA_2468 CYA_2468 CYA_2468 2478895 2479182 + conserved hypothetical protein gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2468 CYA_2469 CYA_2469 CYA_2469 2479464 2479952 + Mov34/MPN/PAD-1 family protein identified by match to protein family HMM PF01398 gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2469 CYA_2470 CYA_2470 CYA_2470 2480163 2480444 + ThiS domain protein identified by match to protein family HMM PF02597 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2470 CYA_2471 CYA_2471 CYA_2471 2480447 2481610 + putative molybdopterin biosynthesis protein MoeB identified by match to protein family HMM PF00581%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2471 CYA_2472 CYA_2472 CYA_2472 2483024 2483449 - hypothetical protein identified by Glimmer2%3B putative gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2472 CYA_2473 CYA_2473 ribAB ribAB 2481734 2483035 + riboflavin biosynthesis protein RibA identified by similarity to SP:P17620%3B match to protein family HMM PF00925%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00506 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2473 CYA_2474 CYA_2474 CYA_2474 2483586 2484572 - transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392 gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2474 CYA_2475 CYA_2475 CYA_2475 2484572 2485572 - ISSoc5%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2475 CYA_2476 CYA_2476 CYA_2476 2486028 2486582 + DoxX family protein identified by match to protein family HMM PF07681 gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2476 CYA_2477 CYA_2477 ppk ppk 2486621 2488672 - polyphosphate kinase identified by match to protein family HMM PF02503 gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2477 CYA_2478 CYA_2478 CYA_2478 2488854 2489813 - hydrophobic amino acid ABC transporter (HAAT) family%2C permease protein identified by match to protein family HMM PF02653 gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2478 CYA_2479 CYA_2479 CYA_2479 2489813 2490670 - hydrophobic amino acid ABC transporter (HAAT) family%2C permease protein identified by similarity to SP:P08340%3B match to protein family HMM PF02653 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2479 CYA_2480 CYA_2480 CYA_2480 2490776 2491777 + putative lipoprotein gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2480 CYA_2481 CYA_2481 CYA_2481 2491860 2493524 + sulfatase identified by similarity to GB:AAF72520.1%3B match to protein family HMM PF00884 gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2481 CYA_2482 CYA_2482 CYA_2482 2493528 2494016 - conserved hypothetical protein gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2482 CYA_2483 CYA_2483 fabG fabG 2494430 2495191 + 3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106%3B match to protein family HMM TIGR01830 gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2483 CYA_2484 CYA_2484 ggt ggt 2495197 2496843 - gamma-glutamyltransferase identified by match to protein family HMM PF01019%3B match to protein family HMM TIGR00066 gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2484 CYA_2485 CYA_2485 CYA_2485 2496881 2497573 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2485 CYA_2486 CYA_2486 CYA_2486 2497673 2498335 - conserved hypothetical protein identified by similarity to PIR:AG2426%3B match to protein family HMM PF05728 gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2486 CYA_2487 CYA_2487 secG secG 2498350 2498589 - preprotein translocase%2C SecG subunit identified by similarity to SP:P33582%3B match to protein family HMM PF03840%3B match to protein family HMM TIGR00810 gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2487 CYA_2488 CYA_2488 CYA_2488 2499093 2499383 + hypothetical protein identified by Glimmer2%3B putative gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2488 CYA_2489 CYA_2489 panB panB 2499425 2500210 - 3-methyl-2-oxobutanoate hydroxymethyltransferase identified by match to protein family HMM PF02548%3B match to protein family HMM TIGR00222 gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2489 CYA_2490 CYA_2490 CYA_2490 2500377 2500463 + tRNA-OTHER tRNA-Pseudo tRNA gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2490 CYA_2491 CYA_2491 CYA_2491 2501428 2502273 - conserved hypothetical protein gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2491 CYA_2492 CYA_2492 pcyA pcyA 2500691 2501431 + phycocyanobilin:ferredoxin oxidoreductase identified by match to protein family HMM PF05996 gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2492 CYA_2493 CYA_2493 prmA prmA 2502828 2503613 + ribosomal protein L11 methyltransferase identified by match to protein family HMM PF01170%3B match to protein family HMM PF05175%3B match to protein family HMM PF06325%3B match to protein family HMM TIGR00406 gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2493 CYA_2494 CYA_2494 CYA_2494 2503583 2504401 + conserved hypothetical protein identified by similarity to PIR:AB1975%3B match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2494 CYA_2495 CYA_2495 hisS hisS 2504482 2505741 + histidyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442 gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2495 CYA_2496 CYA_2496 CYA_2496 2505749 2507278 + conserved hypothetical protein gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2496 CYA_2497 CYA_2497 CYA_2497 2507293 2508129 - universal stress protein family identified by match to protein family HMM PF00582 gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2497 CYA_2498 CYA_2498 CYA_2498 2508231 2509130 - hypothetical protein identified by Glimmer2%3B putative gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2498 CYA_2499 CYA_2499 CYA_2499 2509159 2510295 - putative lipoprotein gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2499 CYA_2500 CYA_2500 CYA_2500 2510292 2511791 - putative membrane protein gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2500 CYA_2501 CYA_2501 CYA_2501 2512198 2512599 + mannose-6-phosphate isomerase family protein identified by match to protein family HMM PF01050%3B match to protein family HMM PF07883 gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2501 CYA_2502 CYA_2502 CYA_2502 2512762 2514654 + hypothetical protein identified by Glimmer2%3B putative gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2502 CYA_2503 CYA_2503 CYA_2503 2515200 2517008 + glycosyl transferase%2C group 2 identified by match to protein family HMM PF00535%3B match to protein family HMM PF05157 gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2503 CYA_2504 CYA_2504 CYA_2504 2517066 2517425 - hypothetical protein identified by Glimmer2%3B putative gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2504 CYA_2505 CYA_2505 CYA_2505 2517430 2517528 + hypothetical protein identified by Glimmer2%3B putative gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2505 CYA_2506 CYA_2506 phoD phoD 2517680 2519407 - alkaline phosphatase identified by match to protein family HMM PF00245 gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2506 CYA_2507 CYA_2507 clpS-2 clpS-2 2519672 2519953 + ATP-dependent Clp protease adaptor protein ClpS identified by match to protein family HMM PF02617 gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2507 CYA_2508 CYA_2508 CYA_2508 2520713 2520823 - hypothetical protein identified by Glimmer2%3B putative gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2508 CYA_2509 CYA_2509 CYA_2509 2519969 2520763 + CAAX amino terminal protease family protein identified by match to protein family HMM PF02517 gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2509 CYA_2510 CYA_2510 CYA_2510 2520824 2522311 - transporter%2C solute:sodium symporter (SSS) family identified by similarity to SP:P16256%3B match to protein family HMM PF00474 gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2510 CYA_2511 CYA_2511 CYA_2511 2522304 2522534 - hypothetical protein identified by Glimmer2%3B putative gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2511 CYA_2512 CYA_2512 dprA dprA 2522681 2523826 + DNA protecting protein DprA identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732 gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2512 CYA_2513 CYA_2513 hisA hisA 2524851 2525636 + phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00007 gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2513 CYA_2514 CYA_2514 CYA_2514 2526051 2527241 + peptidase%2C M20D family identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2514 CYA_2515 CYA_2515 CYA_2515 2527385 2527972 - conserved hypothetical protein identified by similarity to PIR:AI2386 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2515 CYA_2516 CYA_2516 CYA_2516 2528172 2529896 - conserved hypothetical protein identified by similarity to GB:BAC07803.1%3B match to protein family HMM PF01935 gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2516 CYA_2517 CYA_2517 CYA_2517 2529896 2530489 - conserved hypothetical protein gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2517 CYA_2518 CYA_2518 CYA_2518 2530486 2531679 - conserved hypothetical protein gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2518 CYA_2519 CYA_2519 CYA_2519 2531669 2535265 - RecF/RecN/SMC N terminal domain protein identified by match to protein family HMM PF02463 gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2519 CYA_2520 CYA_2520 CYA_2520 2535268 2536536 - Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2520 CYA_2521 CYA_2521 psaA psaA 2536947 2539214 + photosystem I core protein PsaA identified by match to protein family HMM PF00223%3B match to protein family HMM TIGR01335 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2521 CYA_2522 CYA_2522 psaB psaB 2539236 2541473 + photosystem I core protein PsaB identified by match to protein family HMM PF00223%3B match to protein family HMM TIGR01336 gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2522 CYA_2523 CYA_2523 CYA_2523 2541914 2543251 - hypothetical protein identified by Glimmer2%3B putative gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2523 CYA_2524 CYA_2524 CYA_2524 2543742 2544962 + putative lipoprotein gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2524 CYA_2525 CYA_2525 CYA_2525 2545023 2546408 + putative lipoprotein gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2525 CYA_2526 CYA_2526 CYA_2526 2546716 2546826 + hypothetical protein identified by Glimmer2%3B putative gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2526 CYA_2527 CYA_2527 CYA_2527 2546833 2548365 - peptidase%2C M17 (leucyl aminopeptidase) family identified by match to protein family HMM PF00883%3B match to protein family HMM PF02789 gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2527 CYA_2528 CYA_2528 CYA_2528 2548375 2548476 + hypothetical protein identified by Glimmer2%3B putative gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2528 CYA_2529 CYA_2529 CYA_2529 2549277 2550113 - manganese/zinc/iron chelate ABC transporter (MZT) family%2C permease protein identified by similarity to SP:P39832%3B match to protein family HMM PF00950 gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2529 CYA_2530 CYA_2530 CYA_2530 2548507 2549280 + conserved hypothetical protein gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2530 CYA_2531 CYA_2531 CYA_2531 2550123 2550893 - manganese/zinc/iron chelate ABC ransporter (MZT) family%2C ATP-binding protein identified by similarity to SP:Q55281%3B match to protein family HMM PF00005 gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2531 CYA_2532 CYA_2532 CYA_2532 2550890 2551981 - putative zinc ABC transporter%2C zinc-binding protein identified by similarity to PDB:1PQ4_A%3B match to protein family HMM PF01297 gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2532 CYA_2533 CYA_2533 CYA_2533 2551995 2552438 - Fe-S metabolism protein%2C SufE family identified by match to protein family HMM PF02657 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2533 CYA_2534 CYA_2534 CYA_2534 2552549 2553688 - cyclopropane-fatty-acyl-phospholipid synthase identified by match to protein family HMM PF02353 gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2534 CYA_2535 CYA_2535 CYA_2535 2555487 2555579 + hypothetical protein identified by Glimmer2%3B putative gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2535 CYA_2536 CYA_2536 CYA_2536 2555606 2556028 + conserved hypothetical protein identified by similarity to GB:AAU90688.1%3B match to protein family HMM PF01951 gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2536 CYA_2537 CYA_2537 CYA_2537 2556041 2557471 + conserved hypothetical protein identified by similarity to GB:AAU90689.1%3B match to protein family HMM PF01139 gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2537 CYA_2538 CYA_2538 CYA_2538 2558326 2559216 - oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2538 CYA_2539 CYA_2539 cas2-4 cas2-4 2559707 2559985 - CRISPR-associated protein Cas2 identified by match to protein family HMM PF02647%3B match to protein family HMM TIGR01573 gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2539 CYA_2540 CYA_2540 cas1-2 cas1-2 2559985 2560974 - CRISPR-associated protein Cas1%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF01867%3B match to protein family HMM TIGR00287 pseudogene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2540 CYA_2541 CYA_2541 CYA_2541 2560974 2561273 - conserved hypothetical protein gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2541 CYA_2542 CYA_2542 cmr6 cmr6 2561306 2563264 - CRISPR-associated RAMP protein%2C Cmr6 family identified by match to protein family HMM PF03787 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2542 CYA_2543 CYA_2543 CYA_2543 2563294 2563935 - conserved hypothetical protein identified by similarity to GB:BAC88877.1%3B match to protein family HMM PF05685 gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2543 CYA_2544 CYA_2544 CYA_2544 2563935 2564327 - conserved hypothetical protein identified by similarity to GB:BAD01988.1 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2544 CYA_2545 CYA_2545 cmr4 cmr4 2564341 2565111 - CRISPR-associated RAMP protein%2C Cmr4 family identified by match to protein family HMM PF03787%3B match to protein family HMM TIGR02580 gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2545 CYA_2546 CYA_2546 CYA_2546 2565157 2566281 - conserved hypothetical protein identified by similarity to GB:BAD01991.1 gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2546 CYA_2547 CYA_2547 crm2-2 crm2-2 2566278 2569103 - CRISPR-associated protein%2C Crm2 family identified by match to protein family HMM TIGR02577 gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2547 CYA_2548 CYA_2548 CYA_2548 2569518 2570837 - CRISPR-associated protein%2C TM1812 family identified by match to protein family HMM TIGR02221%3B match to protein family HMM TIGR02549 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2548 CYA_2549 CYA_2549 CYA_2549 2570815 2570973 + hypothetical protein identified by Glimmer2%3B putative gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2549 CYA_2550 CYA_2550 CYA_2550 2571016 2571600 + conserved hypothetical protein identified by similarity to PIR:S76377%3B match to protein family HMM PF05685 gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2550 CYA_2551 CYA_2551 CYA_2551 2571628 2572236 + conserved hypothetical protein identified by similarity to GB:BAC92021.1%3B match to protein family HMM PF05685 gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2551 CYA_2552 CYA_2552 CYA_2552 2572193 2572879 + hypothetical protein identified by Glimmer2%3B putative gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2552 CYA_2553 CYA_2553 CYA_2553 2573294 2576749 + sensory box histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2553 CYA_2554 CYA_2554 eno eno 2579118 2580416 - phosphopyruvate hydratase identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060 gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2554 CYA_2555 CYA_2555 CYA_2555 2577070 2579121 + prolyl oligopeptidase identified by similarity to SP:Q06903%3B match to protein family HMM PF00326%3B match to protein family HMM PF02897 gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2555 CYA_2556 CYA_2556 CYA_2556 2580599 2581003 + universal stress protein family identified by match to protein family HMM PF00582 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2556 CYA_2557 CYA_2557 CYA_2557 2581160 2581519 + ferredoxin-thioredoxin reductase%2C catalytic beta subunit identified by match to protein family HMM PF02943 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2557 CYA_2558 CYA_2558 psbX-1 psbX-1 2581637 2581753 + photosystem II reaction center protein PsbX identified by match to protein family HMM PF06596 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2558 CYA_2559 CYA_2559 CYA_2559 2581836 2583239 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2559 CYA_2560 CYA_2560 CYA_2560 2583385 2584767 + CemA family protein identified by match to protein family HMM PF03040 gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2560 CYA_2561 CYA_2561 CYA_2561 2584772 2584924 + hypothetical protein identified by Glimmer2%3B putative gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2561 CYA_2562 CYA_2562 CYA_2562 2584940 2585527 - hypothetical protein identified by Glimmer2%3B putative gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2562 CYA_2563 CYA_2563 CYA_2563 2585536 2587392 - transporter%2C small conductance mechanosensitive ion channel (MscS) family identified by similarity to SP:P77338%3B match to protein family HMM PF00924 gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2563 CYA_2564 CYA_2564 uvrB uvrB 2587475 2589562 - excinuclease ABC%2C B subunit identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631 gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2564 CYA_2565 CYA_2565 CYA_2565 2589764 2590624 - conserved hypothetical protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2565 CYA_2566 CYA_2566 CYA_2566 2590653 2591630 - putative cobalamin biosynthesis protein CobW identified by match to protein family HMM PF02492%3B match to protein family HMM PF07683 gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2566 CYA_2567 CYA_2567 CYA_2567 2591753 2591923 + hypothetical protein identified by Glimmer2%3B putative gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2567 CYA_2568 CYA_2568 CYA_2568 2592635 2593231 - conserved hypothetical protein identified by similarity to PIR:AC2473%3B match to protein family HMM PF06206 gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2568 CYA_2569 CYA_2569 CYA_2569 2594766 2597696 - sensory box histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2569 CYA_2570 CYA_2570 CYA_2570 2593699 2594769 + radical SAM enzyme%2C Cfr family identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048 gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2570 CYA_2571 CYA_2571 CYA_2571 2597704 2598345 - quaternary amine ABC transporter (QAT) family%2C permease protein identified by similarity to SP:Q45461%3B match to protein family HMM PF00528 gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2571 CYA_2572 CYA_2572 CYA_2572 2598424 2599041 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2572 CYA_2573 CYA_2573 CYA_2573 2598896 2600176 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2573 CYA_2574 CYA_2574 CYA_2574 2600434 2600940 + conserved hypothetical protein identified by similarity to PIR:H90201 gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2574 CYA_2575 CYA_2575 CYA_2575 2600963 2602072 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2575 CYA_2576 CYA_2576 CYA_2576 2602150 2602755 - response regulator identified by match to protein family HMM PF00072 gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2576 CYA_2577 CYA_2577 CYA_2577 2602994 2603335 - conserved hypothetical protein gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2577 CYA_2578 CYA_2578 CYA_2578 2603363 2603584 - hypothetical protein identified by Glimmer2%3B putative gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2578 CYA_2579 CYA_2579 CYA_2579 2603693 2604097 - iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037 gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2579 CYA_2580 CYA_2580 CYA_2580 2604256 2604732 - ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2580 CYA_2581 CYA_2581 CYA_2581 2604688 2605959 + ISSoc3%2C orfB transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2581 CYA_2582 CYA_2582 CYA_2582 2606279 2608678 + MutS2 family protein Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.%3B identified by match to protein family HMM PF00488%3B match to protein family HMM PF01713%3B match to protein family HMM TIGR01069 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2582 CYA_2583 CYA_2583 CYA_2583 2608723 2608920 - hypothetical protein identified by Glimmer2%3B putative gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2583 CYA_2584 CYA_2584 CYA_2584 2608814 2609137 - hypothetical protein identified by Glimmer2%3B putative gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2584 CYA_2585 CYA_2585 CYA_2585 2609202 2609414 - urease%2C beta subunit%2C truncation identified by similarity to SP:Q07398 gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2585 CYA_2586 CYA_2586 CYA_2586 2609520 2610799 - ISSoc3%2C orfB transposase%2C insertion%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2586 CYA_2587 CYA_2587 CYA_2587 2610755 2611231 + ISSoc3%2C orfA transposase identified by match to protein family HMM PF01797 gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2587 CYA_2588 CYA_2588 CYA_2588 2611370 2611636 - urease%2C gamma subunit%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2588 CYA_2589 CYA_2589 CYA_2589 2611714 2611854 - hypothetical protein identified by Glimmer2%3B putative gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2589 CYA_2590 CYA_2590 hrcA hrcA 2611973 2613151 + heat-inducible transcription repressor HrcA identified by match to protein family HMM PF01628%3B match to protein family HMM TIGR00331 gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2590 CYA_2591 CYA_2591 tilS tilS 2613192 2614202 + tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171%3B match to protein family HMM TIGR02432 gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2591 CYA_2592 CYA_2592 CYA_2592 2614376 2615212 - SpoIID/LytB domain protein identified by match to protein family HMM TIGR02669 gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2592 CYA_2593 CYA_2593 CYA_2593 2615291 2616580 - transporter%2C drug:H+ antiporter-1 (12 spanner) (DHA1) family identified by match to protein family HMM PF07690 gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2593 CYA_2594 CYA_2594 CYA_2594 2616763 2617065 + conserved hypothetical protein TIGR00278 identified by match to protein family HMM PF01809%3B match to protein family HMM TIGR00278 gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2594 CYA_2595 CYA_2595 CYA_2595 2617089 2617463 - putative endoribonuclease L-PSP identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2595 CYA_2596 CYA_2596 CYA_2596 2617489 2617641 + hypothetical protein identified by Glimmer2%3B putative gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2596 CYA_2597 CYA_2597 CYA_2597 2617632 2617844 + conserved domain protein identified by similarity to GB:CAE20678.1 gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2597 CYA_2598 CYA_2598 CYA_2598 2617893 2618285 - ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM TIGR01766 pseudogene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2598 CYA_2599 CYA_2599 CYA_2599 2619075 2619194 - hypothetical protein identified by Glimmer2%3B putative gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2599 CYA_2600 CYA_2600 psbX-2 psbX-2 2619212 2619328 - photosystem II reaction center protein PsbX identified by match to protein family HMM PF06596 gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2600 CYA_2601 CYA_2601 CYA_2601 2619425 2619778 - ferredoxin-thioredoxin reductase%2C catalytic beta subunit identified by match to protein family HMM PF02943 gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2601 CYA_2602 CYA_2602 CYA_2602 2620068 2620514 - universal stress protein family%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error pseudogene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2602 CYA_2603 CYA_2603 CYA_2603 2620696 2621439 - conserved hypothetical protein identified by similarity to SP:P73883 gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2603 CYA_2604 CYA_2604 CYA_2604 2621611 2623191 - photosystem II protein%2C PsbB/PsbC family identified by match to protein family HMM PF00421%3B match to protein family HMM PF02605 gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2604 CYA_2605 CYA_2605 CYA_2605 2623240 2623749 - flavodoxin identified by similarity to SP:P27319%3B match to protein family HMM PF00258%3B match to protein family HMM TIGR01752 gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2605 CYA_2606 CYA_2606 CYA_2606 2623806 2624840 - photosystem II protein%2C PsbB/PsbC family identified by similarity to SP:P48187%3B match to protein family HMM PF00421 gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2606 CYA_2607 CYA_2607 CYA_2607 2625026 2625205 - hypothetical protein identified by Glimmer2%3B putative gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2607 CYA_2608 CYA_2608 CYA_2608 2625231 2626463 + putative iron-regulated protein A identified by similarity to SP:P12608 gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2608 CYA_2609 CYA_2609 CYA_2609 2626939 2627061 - mini-IS element%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2609 CYA_2610 CYA_2610 CYA_2610 2626509 2627000 + conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2610 CYA_2611 CYA_2611 CYA_2611 2628153 2628827 - oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2611 CYA_2612 CYA_2612 CYA_2612 2627221 2628156 + conserved hypothetical protein identified by match to protein family HMM PF06537 gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2612 CYA_2613 CYA_2613 CYA_2613 2629189 2629848 + putative membrane protein gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2613 CYA_2614 CYA_2614 CYA_2614 2630177 2630953 - conserved hypothetical protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2614 CYA_2615 CYA_2615 CYA_2615 2631196 2631858 - conserved hypothetical protein identified by similarity to PIR:AC2428 gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2615 CYA_2616 CYA_2616 CYA_2616 2632185 2633936 + putative DNA mismatch repair protein MutL identified by match to protein family HMM PF01119%3B match to protein family HMM PF02518 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2616 CYA_2617 CYA_2617 CYA_2617 2633965 2634822 + VKORC1/thioredoxin domain protein identified by match to protein family HMM PF07884 gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2617 CYA_2618 CYA_2618 CYA_2618 2635110 2636108 - response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2618 CYA_2619 CYA_2619 btpA btpA 2636271 2637158 - photosystem I biogenesis protein BtpA identified by similarity to SP:P72966%3B match to protein family HMM PF03437%3B match to protein family HMM TIGR00259 gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2619 CYA_2620 CYA_2620 pyrD pyrD 2637171 2638301 - dihydroorotate oxidase identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01036 gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2620 CYA_2621 CYA_2621 CYA_2621 2638449 2639702 - hydrophobic amino acid ABC transporter (HAAT) family%2C amino acid-binding protein identified by similarity to SP:P21175%3B match to protein family HMM PF01094%3B match to protein family HMM TIGR01409 gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2621 CYA_2622 CYA_2622 CYA_2622 2639930 2640748 + hydrophobic amino acid ABC transporter (HAAT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2622 CYA_2623 CYA_2623 CYA_2623 2640745 2641452 + hydrophobic amino acid ABC transporter (HAAT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2623 CYA_2624 CYA_2624 recN recN 2641479 2643185 - DNA repair protein RecN identified by match to protein family HMM TIGR00634 gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2624 CYA_2625 CYA_2625 CYA_2625 2643258 2643572 - hypothetical protein identified by Glimmer2%3B putative gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2625 CYA_2626 CYA_2626 hisB hisB 2644293 2644913 - imidazoleglycerol-phosphate dehydratase identified by match to protein family HMM PF00475 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2626 CYA_2627 CYA_2627 CYA_2627 2643684 2644310 + RNA pseudouridine synthase family protein identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR00093 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2627 CYA_2628 CYA_2628 CYA_2628 2645144 2646559 + putative ATP-dependent DNA helicase RecQ identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00614 gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2628 CYA_2629 CYA_2629 CYA_2629 2646700 2648472 + glycosyl hydrolase domain protein identified by match to protein family HMM PF00933 gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2629 CYA_2630 CYA_2630 CYA_2630 2648737 2649054 + cytochrome c family protein identified by match to protein family HMM PF00034 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2630 CYA_2631 CYA_2631 CYA_2631 2649064 2649741 + putative phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2631 CYA_2632 CYA_2632 CYA_2632 2649785 2650144 - hypothetical protein identified by Glimmer2%3B putative gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2632 CYA_2633 CYA_2633 CYA_2633 2650477 2650803 - putative DNA-binding protein identified by similarity to SP:P06966 gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2633 CYA_2634 CYA_2634 CYA_2634 2650912 2651022 - hypothetical protein identified by Glimmer2%3B putative gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2634 CYA_2635 CYA_2635 CYA_2635 2651108 2652193 + RNA polymerase sigma factor%2C group 1 identified by similarity to PIR:S70834%3B match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393 gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2635 CYA_2636 CYA_2636 CYA_2636 2652298 2653569 - ISSoc3%2C orfB transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2636 CYA_2637 CYA_2637 CYA_2637 2653693 2654259 - ISSoc4%2C transposase orfB identified by similarity to GB:AAC97587.1 gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2637 CYA_2638 CYA_2638 CYA_2638 2653525 2653755 + ISSoc3%2C orfA transposase%2C interruption-N This gene is disrupted by an insertion of an ISSoc4 element. gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2638 CYA_2639 CYA_2639 CYA_2639 2654241 2654639 - ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2639 CYA_2640 CYA_2640 CYA_2640 2654705 2655019 + ISSoc3%2C orfA transposase%2C interruption-C This gene is disrupted by an insertion of an ISSoc4 element.%3B identified by match to protein family HMM PF01797 gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2640 CYA_2641 CYA_2641 CYA_2641 2655267 2655764 + Mo-dependent nitrogenase domain protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2641 CYA_2642 CYA_2642 CYA_2642 2656899 2658311 - transporter%2C folate-biopterin transporter (FBT) family identified by match to protein family HMM PF03092%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00788 gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2642 CYA_2643 CYA_2643 rph rph 2658593 2659321 + ribonuclease PH identified by match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM TIGR01966 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2643 CYA_2644 CYA_2644 CYA_2644 2659824 2661062 + response regulator identified by match to protein family HMM PF00072 gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2644 CYA_2645 CYA_2645 ribE ribE 2661088 2661723 + riboflavin synthase%2C alpha subunit identified by match to protein family HMM PF00677%3B match to protein family HMM TIGR00187 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2645 CYA_2646 CYA_2646 aroK aroK 2661750 2662319 + shikimate kinase identified by match to protein family HMM PF01202 gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2646 CYA_2647 CYA_2647 psbD-2 psbD-2 2662397 2663455 - photosystem II protein D2 identified by match to protein family HMM PF00124%3B match to protein family HMM TIGR01152 gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2647 CYA_2648 CYA_2648 glgA-2 glgA-2 2663700 2665154 + glycogen/starch synthase%2C ADP-glucose type identified by match to protein family HMM PF00534%3B match to protein family HMM TIGR02095 gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2648 CYA_2649 CYA_2649 CYA_2649 2665895 2666446 - putative methyltransferase identified by match to protein family HMM PF03602%3B match to protein family HMM TIGR00095 gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2649 CYA_2650 CYA_2650 CYA_2650 2665281 2665898 + tetratricopeptide repeat protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2650 CYA_2651 CYA_2651 CYA_2651 2666452 2667342 - TPR repeat protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2651 CYA_2652 CYA_2652 CYA_2652 2667403 2668245 - PBS lyase HEAT-like repeat protein identified by match to protein family HMM PF02985%3B match to protein family HMM PF03130 gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2652 CYA_2653 CYA_2653 CYA_2653 2668683 2671094 - ATP-dependent helicase%2C DEAD/DEAH box family identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM PF08148 gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2653 CYA_2654 CYA_2654 trpG trpG 2671274 2671909 + anthranilate synthase component II identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2654 CYA_2655 CYA_2655 CYA_2655 2671900 2672670 + hydrolase%2C metallo-beta-lactamase family gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2655 CYA_2656 CYA_2656 CYA_2656 2672675 2673235 + ankyrin repeat protein identified by match to protein family HMM PF00023 gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2656 CYA_2657 CYA_2657 CYA_2657 2673243 2674238 - deoxyhypusine synthase family protein Hypusine is a modified amino acid found in eukarya and archaea%2C but as yet unknown in prokarya.%3B identified by match to protein family HMM PF01916 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2657 CYA_2658 CYA_2658 bioB bioB 2674363 2675295 + biotin synthase identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433 gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2658 CYA_2659 CYA_2659 CYA_2659 2675506 2677509 + sensory box histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2659 CYA_2660 CYA_2660 CYA_2660 2677542 2678036 + hypothetical protein identified by Glimmer2%3B putative gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2660 CYA_2661 CYA_2661 CYA_2661 2677850 2678146 + conserved hypothetical protein gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2661 CYA_2662 CYA_2662 CYA_2662 2678156 2679193 - CBS domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595 gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2662 CYA_2663 CYA_2663 panC/cmk panC/cmk 2679390 2681012 - pantoate--beta-alanine ligase/cytidylate kinase identified by match to protein family HMM PF02224%3B match to protein family HMM PF02569%3B match to protein family HMM TIGR00017%3B match to protein family HMM TIGR00018%3B match to protein family HMM TIGR00125 gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2663 CYA_2664 CYA_2664 petG petG 2681084 2681197 - cytochrome b6-f complex%2C subunit V identified by match to protein family HMM PF02529 gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2664 CYA_2665 CYA_2665 CYA_2665 2682823 2683404 - DnaJ domain protein identified by match to protein family HMM PF00226%3B match to protein family HMM PF07719 gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2665 CYA_2666 CYA_2666 menE menE 2681420 2682826 + O-succinylbenzoate--CoA ligase identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR01923 gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2666 CYA_2667 CYA_2667 CYA_2667 2683755 2684510 + ankyrin repeat protein identified by match to protein family HMM PF00023 gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2667 CYA_2668 CYA_2668 CYA_2668 2685242 2685592 + hypothetical protein identified by Glimmer2%3B putative gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2668 CYA_2669 CYA_2669 CYA_2669 2685650 2685847 - hypothetical protein identified by Glimmer2%3B putative gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2669 CYA_2670 CYA_2670 CYA_2670 2685875 2686795 + L-lactate dehydrogenase identified by match to protein family HMM PF00056%3B match to protein family HMM PF02866%3B match to protein family HMM TIGR01771 gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2670 CYA_2671 CYA_2671 trmB trmB 2686875 2687585 + tRNA (guanine-N(7)-)-methyltransferase identified by match to protein family HMM PF02390%3B match to protein family HMM TIGR00091 gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2671 CYA_2672 CYA_2672 CYA_2672 2687653 2689266 + CAAX amino terminal protease family protein identified by match to protein family HMM PF02517 gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2672 CYA_2673 CYA_2673 CYA_2673 2689279 2690304 - DnaJ domain protein identified by match to protein family HMM PF00226%3B match to protein family HMM PF07719 gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2673 CYA_2674 CYA_2674 CYA_2674 2690262 2691098 - polar amino acid ABC transporter (PAAT) family%2C amino acid-binding protein identified by similarity to SP:P02911%3B match to protein family HMM PF00497 gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2674 CYA_2675 CYA_2675 CYA_2675 2691230 2692081 - inositol monophosphatase family protein identified by match to protein family HMM PF00459 gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2675 CYA_2676 CYA_2676 CYA_2676 2692424 2693002 + FHA domain protein identified by match to protein family HMM PF00498 gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2676 CYA_2677 CYA_2677 CYA_2677 2693023 2693094 + tRNA-Gln tRNA gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2677 CYA_2678 CYA_2678 cobQ cobQ 2693306 2694793 + cobyric acid synthase CobQ identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00313 gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2678 CYA_2679 CYA_2679 galE galE 2694862 2695872 + UDP-glucose 4-epimerase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179 gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2679 CYA_2680 CYA_2680 cutA cutA 2695944 2696279 + divalent-cation tolerance protein CutA identified by similarity to SP:P36654%3B match to protein family HMM PF03091 gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2680 CYA_2681 CYA_2681 coaD coaD 2696302 2696781 + pantetheine-phosphate adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510 gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2681 CYA_2682 CYA_2682 CYA_2682 2696798 2697196 - conserved hypothetical protein identified by similarity to PIR:S75155 gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2682 CYA_2683 CYA_2683 CYA_2683 2697360 2698538 + ATPase%2C arsenite-antimonite (ArsAB) efflux family identified by match to protein family HMM PF02374%3B match to protein family HMM TIGR00345 gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2683 CYA_2684 CYA_2684 CYA_2684 2698806 2699423 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2684 CYA_2685 CYA_2685 CYA_2685 2699278 2700558 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2685 CYA_2686 CYA_2686 gid gid 2700632 2701987 + gid protein identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00137 gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2686 CYA_2687 CYA_2687 CYA_2687 2702045 2703496 - putative transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM PF07282 pseudogene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2687 CYA_2688 CYA_2688 ackA ackA 2703599 2704810 + acetate kinase identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016 gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2688 CYA_2689 CYA_2689 CYA_2689 2704985 2705455 + hypothetical protein identified by Glimmer2%3B putative gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2689 CYA_2690 CYA_2690 CYA_2690 2705996 2706538 + FHA domain protein identified by match to protein family HMM PF00498 gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2690 CYA_2691 CYA_2691 CYA_2691 2706562 2706690 - hypothetical protein identified by Glimmer2%3B putative gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2691 CYA_2692 CYA_2692 CYA_2692 2706717 2708738 + FHA domain protein identified by match to protein family HMM PF00498 gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2692 CYA_2693 CYA_2693 CYA_2693 2708985 2709437 + conserved hypothetical protein identified by similarity to PIR:AD2030 gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2693 CYA_2694 CYA_2694 CYA_2694 2709546 2710163 + ISSoc2%2C resolvase identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2694 CYA_2695 CYA_2695 CYA_2695 2710018 2711283 + ISSoc2%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2695 CYA_2696 CYA_2696 CYA_2696 2711745 2712014 + conserved hypothetical protein identified by similarity to SP:Q8Z0I8%3B match to protein family HMM PF04025 gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2696 CYA_2697 CYA_2697 CYA_2697 2712109 2712762 + putative guanylate kinase identified by match to protein family HMM PF00625 gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2697 CYA_2698 CYA_2698 CYA_2698 2713695 2714087 + ISSoc6%2C orfB transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by match to protein family HMM TIGR01766 pseudogene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2698 CYA_2699 CYA_2699 CYA_2699 2714420 2715112 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2699 CYA_2700 CYA_2700 lgt-2 lgt-2 2715285 2716424 + prolipoprotein diacylglyceryl transferase identified by similarity to SP:O34752%3B match to protein family HMM PF01790%3B match to protein family HMM TIGR00544 gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2700 CYA_2701 CYA_2701 CYA_2701 2716467 2718423 - TPR repeat protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 pseudogene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2701 CYA_2702 CYA_2702 CYA_2702 2718426 2719907 - peptidase%2C M50 family identified by match to protein family HMM PF02163 gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2702 CYA_2703 CYA_2703 acsF acsF 2719954 2721045 - magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase identified by match to protein family HMM PF02915%3B match to protein family HMM TIGR02029 gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2703 CYA_2704 CYA_2704 gltS gltS 2721145 2725752 - ferredoxin-dependent glutamate synthase identified by similarity to SP:P55038%3B match to protein family HMM PF00310%3B match to protein family HMM PF01493%3B match to protein family HMM PF01645%3B match to protein family HMM PF04898 gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2704 CYA_2705 CYA_2705 CYA_2705 2725833 2725967 - hypothetical protein identified by Glimmer2%3B putative gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2705 CYA_2706 CYA_2706 CYA_2706 2726041 2726886 - hypothetical protein identified by Glimmer2%3B putative gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2706 CYA_2707 CYA_2707 CYA_2707 2727113 2727310 + hypothetical protein identified by Glimmer2%3B putative gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2707 CYA_2708 CYA_2708 CYA_2708 2727385 2728404 + drug exporter-1 ABC transporter (DrugE1) family%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01188 gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2708 CYA_2709 CYA_2709 CYA_2709 2728530 2728928 + ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2709 CYA_2710 CYA_2710 CYA_2710 2728910 2729476 + ISSoc4%2C transposase orfB identified by similarity to GB:AAC97587.1 gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2710 CYA_2711 CYA_2711 CYA_2711 2729586 2730440 + drug exporter-1 (DrugE1) ABC-2 transporter family%2C permease protein identified by match to protein family HMM PF01061 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2711 CYA_2712 CYA_2712 CYA_2712 2730464 2730679 - conserved hypothetical protein gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2712 CYA_2713 CYA_2713 CYA_2713 2730798 2731442 + conserved hypothetical protein identified by similarity to PIR:AB2392 gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2713 CYA_2714 CYA_2714 CYA_2714 2731625 2734870 - GAF domain/histidine kinase domain protein identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518 gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2714 CYA_2715 CYA_2715 gltX gltX 2734803 2736242 - glutamyl-tRNA synthetase identified by match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2715 CYA_2716 CYA_2716 CYA_2716 2736469 2736819 + hypothetical protein identified by Glimmer2%3B putative gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2716 CYA_2717 CYA_2717 CYA_2717 2736917 2737156 + conserved hypothetical protein identified by similarity to GB:BAC10019.1 gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2717 CYA_2718 CYA_2718 CYA_2718 2737203 2738195 - conserved domain protein gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2718 CYA_2719 CYA_2719 CYA_2719 2738226 2738507 - conserved hypothetical protein gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2719 CYA_2720 CYA_2720 CYA_2720 2738580 2739880 - ISSoc3%2C orfB transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 pseudogene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2720 CYA_2721 CYA_2721 CYA_2721 2739836 2740009 + ISSoc3%2C orfA transposase%2C interruption-N This gene is disrupted by an insertion of an ISSoc4 element. gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2721 CYA_2722 CYA_2722 CYA_2722 2740043 2740447 + ISSoc4%2C transposase orfA identified by similarity to GB:AAC97588.1 gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2722 CYA_2723 CYA_2723 CYA_2723 2740383 2740988 + gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2723 CYA_2724 CYA_2724 CYA_2724 2741015 2741329 + ISSoc3%2C orfA transposase%2C interruption-C This gene is disrupted by an insertion of an ISSoc4 element.%3B identified by match to protein family HMM PF01797 gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2724 CYA_2725 CYA_2725 CYA_2725 2741474 2741728 + hypothetical protein identified by Glimmer2%3B putative gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2725 CYA_2726 CYA_2726 CYA_2726 2741783 2742499 + putative outer membrane protein identified by match to protein family HMM PF04402 gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2726 CYA_2727 CYA_2727 CYA_2727 2742709 2744052 + response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2727 CYA_2728 CYA_2728 CYA_2728 2744120 2744623 + hypothetical protein identified by Glimmer2%3B putative gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2728 CYA_2729 CYA_2729 aroE aroE 2744659 2745534 + shikimate 5-dehydrogenase identified by match to protein family HMM PF01488%3B match to protein family HMM TIGR00507 gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2729 CYA_2730 CYA_2730 CYA_2730 2745811 2747475 + conserved hypothetical protein gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2730 CYA_2731 CYA_2731 CYA_2731 2747491 2747706 + hypothetical protein identified by Glimmer2%3B putative gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2731 CYA_2732 CYA_2732 argS argS 2747913 2749709 - arginyl-tRNA synthetase identified by match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456 gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2732 CYA_2733 CYA_2733 CYA_2733 2749921 2750025 + hypothetical protein identified by Glimmer2%3B putative gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2733 CYA_2734 CYA_2734 CYA_2734 2750055 2750906 + electron transfer flavoprotein%2C beta subunit/FixA family protein identified by match to protein family HMM PF01012 gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2734 CYA_2735 CYA_2735 CYA_2735 2751044 2752162 + electron transfer flavoprotein%2C alpha subunit/FixB family protein identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012 gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2735 CYA_2736 CYA_2736 CYA_2736 2752181 2752465 - conserved hypothetical protein identified by similarity to PIR:AI1923%3B match to protein family HMM PF02325 gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2736 CYA_2737 CYA_2737 CYA_2737 2752755 2753897 + response regulator identified by match to protein family HMM PF00072 gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2737 CYA_2738 CYA_2738 CYA_2738 2754125 2754511 + response regulator identified by match to protein family HMM PF00072 gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2738 CYA_2739 CYA_2739 CYA_2739 2754508 2754873 + response regulator identified by match to protein family HMM PF00072 gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2739 CYA_2740 CYA_2740 cheW cheW 2755039 2755503 + chemotaxis protein cheW identified by similarity to SP:P07365%3B match to protein family HMM PF01584 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2740 CYA_2741 CYA_2741 CYA_2741 2755812 2758262 + putative methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2741 CYA_2742 CYA_2742 CYA_2742 2758450 2763711 + sensor histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895 gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2742 CYA_2743 CYA_2743 CYA_2743 2763846 2764490 + conserved hypothetical protein identified by similarity to PIR:AD2429%3B match to protein family HMM PF03713 gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2743 CYA_2744 CYA_2744 lnt lnt 2764603 2766219 + apolipoprotein N-acyltransferase identified by match to protein family HMM PF00795%3B match to protein family HMM TIGR00546 gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2744 CYA_2745 CYA_2745 CYA_2745 2766302 2766374 + tRNA-Thr tRNA gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2745 CYA_2746 CYA_2746 cbiT cbiT 2766533 2767138 + precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit identified by match to protein family HMM PF03602%3B match to protein family HMM TIGR02469 gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2746 CYA_2747 CYA_2747 CYA_2747 2767286 2767540 + hypothetical protein identified by Glimmer2%3B putative gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2747 CYA_2748 CYA_2748 CYA_2748 2767600 2767962 - RlpA family protein%2C truncation gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2748 CYA_2749 CYA_2749 CYA_2749 2768830 2769303 - conserved hypothetical protein identified by similarity to PIR:S76420 gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2749 CYA_2750 CYA_2750 CYA_2750 2768582 2768833 + ferredoxin-thioredoxin reductase%2C variable subunit identified by similarity to SP:P24018%3B match to protein family HMM PF02941 gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2750 CYA_2751 CYA_2751 hflB hflB 2769533 2771449 + cell division protein FtsH identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM TIGR01241 gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2751 CYA_2752 CYA_2752 CYA_2752 2771629 2773785 - putative alpha-glucan phosphorylase identified by match to protein family HMM PF00343%3B match to protein family HMM TIGR02094 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2752 CYA_2753 CYA_2753 CYA_2753 2774241 2775344 - SpoIID/LytB domain protein identified by match to protein family HMM TIGR02669 gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2753 CYA_2754 CYA_2754 CYA_2754 2775738 2776262 - cytidine/deoxycytidylate deaminase zinc-binding domain protein identified by match to protein family HMM PF00383 gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2754 CYA_2755 CYA_2755 CYA_2755 2776450 2777682 + peptidase%2C S1C (protease Do) family identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595 gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2755 CYA_2756 CYA_2756 CYA_2756 2778001 2779584 + protein kinase identified by match to protein family HMM PF00069%3B match to protein family HMM PF05419 gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2756 CYA_2757 CYA_2757 CYA_2757 2779652 2780014 - hypothetical protein identified by Glimmer2%3B putative gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2757 CYA_2758 CYA_2758 CYA_2758 2781031 2782305 - oxidoreductase%2C FAD-dependent identified by match to protein family HMM PF01266%3B match to protein family HMM PF07992 gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2758 CYA_2759 CYA_2759 CYA_2759 2782776 2785574 + cation transporter%2C P-type ATPase family identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494 gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2759 CYA_2760 CYA_2760 CYA_2760 2785628 2786557 - NAD-dependent epimerase/dehydratase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01777 gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2760 CYA_2761 CYA_2761 CYA_2761 2786900 2787499 + conserved hypothetical protein identified by similarity to PIR:S74966 gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2761 CYA_2762 CYA_2762 hemB hemB 2787500 2788486 - delta-aminolevulinic acid dehydratase identified by match to protein family HMM PF00490 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2762 CYA_2763 CYA_2763 CYA_2763 2788542 2789411 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2763 CYA_2764 CYA_2764 CYA_2764 2789589 2789711 + hypothetical protein identified by Glimmer2%3B putative gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2764 CYA_2765 CYA_2765 psbI psbI 2789830 2789946 + photosystem II reaction center protein PsbI identified by similarity to SP:P17747%3B match to protein family HMM PF02532 gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2765 CYA_2766 CYA_2766 CYA_2766 2790058 2790498 - putative lipoprotein gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2766 CYA_2767 CYA_2767 CYA_2767 2790651 2791283 - BioY family protein identified by match to protein family HMM PF02632 gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2767 CYA_2768 CYA_2768 CYA_2768 2790553 2790654 + hypothetical protein identified by Glimmer2%3B putative gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2768 CYA_2769 CYA_2769 CYA_2769 2791340 2792134 + inositol monophosphatase family protein identified by match to protein family HMM PF00459 gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2769 CYA_2770 CYA_2770 CYA_2770 2792396 2792466 - tRNA-Gly tRNA gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2770 CYA_2771 CYA_2771 CYA_2771 2792561 2793019 - conserved hypothetical protein identified by similarity to PIR:AD1978 gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2771 CYA_2772 CYA_2772 CYA_2772 2795117 2795275 - hypothetical protein identified by Glimmer2%3B putative gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2772 CYA_2773 CYA_2773 CYA_2773 2793174 2795138 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518 gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2773 CYA_2774 CYA_2774 CYA_2774 2795279 2795845 - putative cyclase/dehydrase identified by match to protein family HMM PF03364 gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2774 CYA_2775 CYA_2775 CYA_2775 2795942 2796187 - hypothetical protein identified by Glimmer2%3B putative gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2775 CYA_2776 CYA_2776 petN petN 2796321 2796410 + cytochrome b6-f complex%2C subunit VIII identified by similarity to SP:Q8DKN2%3B match to protein family HMM PF03742 gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2776 CYA_2777 CYA_2777 CYA_2777 2796426 2796614 + hypothetical protein identified by Glimmer2%3B putative gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2777 CYA_2778 CYA_2778 CYA_2778 2796655 2797047 - conserved hypothetical protein identified by similarity to GB:BAC08685.1%3B match to protein family HMM PF03745 gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2778 CYA_2779 CYA_2779 CYA_2779 2797035 2799542 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518 gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2779 CYA_2780 CYA_2780 CYA_2780 2799667 2800452 - hydrolase%2C TatD family identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010 gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2780 CYA_2781 CYA_2781 CYA_2781 2800623 2801213 + conserved hypothetical protein identified by similarity to GB:BAC09340.1 gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2781 CYA_2782 CYA_2782 CYA_2782 2801731 2802735 + brachyspira iron ABC transporter (BIT) family%2C iron-binding protein identified by match to protein family HMM PF01547 gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2782 CYA_2783 CYA_2783 CYA_2783 2802736 2804442 + ferric iron uptake ABC transporter (FeT) family%2C permease protein identified by match to protein family HMM PF00528 gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2783 CYA_2784 CYA_2784 CYA_2784 2804390 2804542 + hypothetical protein identified by Glimmer2%3B putative gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2784 CYA_2785 CYA_2785 ugpB ugpB 2804598 2805950 + glycerol-3-phosphate ABC transporter%2C glycerol-3-phosphate binding protein identified by similarity to SP:P10904%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR01409 gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2785 CYA_2786 CYA_2786 upgA upgA 2806202 2807254 + glycerol-3-phosphate ABC transporter%2C permease protein identified by similarity to SP:P10905%3B match to protein family HMM PF00528 gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2786 CYA_2787 CYA_2787 CYA_2787 2807279 2807713 - conserved hypothetical protein identified by similarity to PIR:S74730 gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2787 CYA_2788 CYA_2788 rpsO rpsO 2807749 2808024 - ribosomal protein S15 identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952 gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2788 CYA_2789 CYA_2789 CYA_2789 2808113 2808793 + phycocyanin alpha subunit phycocyanobilin lyase%2C CpcF subunit-like protein identified by match to protein family HMM PF02985%3B match to protein family HMM PF03130 gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2789 CYA_2790 CYA_2790 apcD apcD 2808860 2809345 - allophycocyanin alpha%2C B subunit identified by similarity to SP:P80556%3B match to protein family HMM PF00502 gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2790 CYA_2791 CYA_2791 pilT-2 pilT-2 2809533 2810900 - twitching mobility protein PilT identified by similarity to GB:AAB30824.1%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2791 CYA_2792 CYA_2792 folE folE 2811142 2811831 - GTP cyclohydrolase I identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR00063 gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2792 CYA_2793 CYA_2793 CYA_2793 2811955 2812680 - oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106 gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2793 CYA_2794 CYA_2794 CYA_2794 2812905 2814101 + ferric iron ABC transporter (FeT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2794 CYA_2795 CYA_2795 CYA_2795 2814557 2815450 + chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein identified by match to protein family HMM PF04278 gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2795 CYA_2796 CYA_2796 CYA_2796 2815492 2816349 + methyltransferase%2C HemK family identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536 gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2796 CYA_2797 CYA_2797 CYA_2797 2816491 2817261 + sensor histidine kinase identified by match to protein family HMM PF00512 gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2797 CYA_2798 CYA_2798 CYA_2798 2817287 2817688 - putative photosystem II protein identified by similarity to SP:P74367 gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2798 CYA_2799 CYA_2799 CYA_2799 2817785 2818501 + NnrU family protein identified by match to protein family HMM PF07298 gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2799 CYA_2800 CYA_2800 CYA_2800 2818865 2820454 - putative hydantoin utilization protein B identified by match to protein family HMM PF02538 gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2800 CYA_2801 CYA_2801 trx-3 trx-3 2818536 2818928 + thioredoxin identified by match to protein family HMM PF00085 gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2801 CYA_2802 CYA_2802 CYA_2802 2820451 2820759 - hypothetical protein identified by Glimmer2%3B putative gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2802 CYA_2803 CYA_2803 CYA_2803 2820791 2821531 - PDZ domain protein identified by match to protein family HMM PF00595 gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2803 CYA_2804 CYA_2804 pip pip 2821568 2822518 - prolyl aminopeptidase identified by similarity to SP:P52279%3B match to protein family HMM PF00561%3B match to protein family HMM TIGR01249 gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2804 CYA_2805 CYA_2805 CYA_2805 2822552 2824759 - glycosyl hydrolase%2C family 57 identified by match to protein family HMM PF03065 gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2805 CYA_2806 CYA_2806 CYA_2806 2824935 2825477 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2806 CYA_2807 CYA_2807 CYA_2807 2825525 2826088 + CpeS-like protein gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2807 CYA_2808 CYA_2808 glcD glcD 2828098 2829564 - glycolate oxidase%2C subunit GlcD identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913%3B match to protein family HMM TIGR00387 gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2808 CYA_2809 CYA_2809 CYA_2809 2826212 2828101 + ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2809 CYA_2810 CYA_2810 CYA_2810 2829694 2830884 + conserved hypothetical protein identified by similarity to PIR:AD1808 gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2810 CYA_2811 CYA_2811 rpmI rpmI 2831007 2831207 + ribosomal protein L35 identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001 gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2811 CYA_2812 CYA_2812 rplT rplT 2831330 2831686 + ribosomal protein L20 identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032 gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2812 CYA_2813 CYA_2813 purH purH 2832488 2834101 - bifunctional purine biosynthesis protein PurH identified by match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355 gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2813 CYA_2814 CYA_2814 CYA_2814 2831691 2832491 + amino acid transporter%2C amino acid-binding protein identified by match to protein family HMM PF00497 gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2814 CYA_2815 CYA_2815 CYA_2815 2834360 2835076 + proton transporter%2C MotA/TolQ/ExbB proton channel family identified by match to protein family HMM PF01618 gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2815 CYA_2816 CYA_2816 CYA_2816 2835080 2835505 + proton transporter%2C ExbD/TolR family identified by similarity to SP:Q9ZHV9%3B match to protein family HMM PF02472 gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2816 CYA_2817 CYA_2817 argF argF 2835539 2836483 - ornithine carbamoyltransferase identified by similarity to SP:P18186%3B match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658 gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2817 CYA_2818 CYA_2818 prc-2 prc-2 2836589 2837884 - C-terminal processing peptidase identified by similarity to SP:Q55669%3B match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225 gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2818 CYA_2819 CYA_2819 CYA_2819 2837907 2838101 - hypothetical protein identified by Glimmer2%3B putative gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2819 CYA_2820 CYA_2820 proA proA 2838133 2839500 + gamma-glutamyl phosphate reductase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR00407 gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2820 CYA_2821 CYA_2821 CYA_2821 2839764 2840309 + putative RNA-binding protein identified by match to protein family HMM PF00076 gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2821 CYA_2822 CYA_2822 CYA_2822 2840401 2841195 + DSBA thioredoxin domain protein identified by match to protein family HMM PF01323 gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2822 CYA_2823 CYA_2823 CYA_2823 2841219 2841914 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2823 CYA_2824 CYA_2824 CYA_2824 2841989 2843173 - sporulation and cell division repeat protein identified by match to protein family HMM PF05036 gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2824 CYA_2825 CYA_2825 CYA_2825 2843283 2843699 - hypothetical protein identified by Glimmer2%3B putative gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2825 CYA_2826 CYA_2826 recJ-2 recJ-2 2843803 2846259 + single-stranded-DNA-specific exonuclease RecJ identified by match to protein family HMM PF01368%3B match to protein family HMM TIGR00644 gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2826 CYA_2827 CYA_2827 CYA_2827 2846282 2846947 + Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2827 CYA_2828 CYA_2828 rdgB rdgB 2846998 2847591 + non-canonical purine NTP pyrophosphatase identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042 gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2828 CYA_2829 CYA_2829 CYA_2829 2847784 2848905 + hypothetical protein identified by Glimmer2%3B putative gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2829 CYA_2830 CYA_2830 tmk tmk 2848921 2849535 + thymidylate kinase identified by match to protein family HMM PF02223%3B match to protein family HMM TIGR00041 gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2830 CYA_2831 CYA_2831 CYA_2831 2849659 2850645 + CHAD domain protein identified by match to protein family HMM PF05235 gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2831 CYA_2832 CYA_2832 CYA_2832 2850743 2851807 + polyamine transporter%2C polyamine-binding protein identified by similarity to SP:P23861%3B match to protein family HMM PF01547 gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2832 CYA_2833 CYA_2833 CYA_2833 2851884 2852084 - hypothetical protein identified by Glimmer2%3B putative gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2833 CYA_2834 CYA_2834 CYA_2834 2851881 2852051 + CAB/ELIP/HLIP family protein gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2834 CYA_2835 CYA_2835 CYA_2835 2852088 2852207 - hypothetical protein identified by Glimmer2%3B putative gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2835 CYA_2836 CYA_2836 CYA_2836 2852264 2856835 - sensory box histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01590%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF05227%3B match to protein family HMM TIGR00229 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2836 CYA_2837 CYA_2837 CYA_2837 2857206 2857583 + hypothetical protein identified by Glimmer2%3B putative gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2837 CYA_2838 CYA_2838 CYA_2838 2857857 2858252 + conserved hypothetical protein identified by similarity to GB:BAC71213.1 gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2838 CYA_2839 CYA_2839 CYA_2839 2858386 2858478 + hypothetical protein identified by Glimmer2%3B putative gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2839 CYA_2840 CYA_2840 CYA_2840 2858802 2858884 - tRNA-Leu tRNA gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2840 CYA_2841 CYA_2841 tgt tgt 2859006 2860109 + queuine tRNA-ribosyltransferase identified by match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449 gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2841 CYA_2842 CYA_2842 CYA_2842 2860211 2860822 + conserved hypothetical protein gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2842 CYA_2843 CYA_2843 CYA_2843 2860886 2862127 + conserved hypothetical protein gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2843 CYA_2844 CYA_2844 CYA_2844 2862134 2862430 + conserved hypothetical protein gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2844 CYA_2845 CYA_2845 CYA_2845 2862567 2862965 + ISSoc4%2C transposase orfA identified by similarity to PIR:AD2038 gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2845 CYA_2846 CYA_2846 CYA_2846 2863004 2863513 + ISSoc4%2C transposase orfB identified by similarity to PIR:AI1851 gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2846 CYA_2847 CYA_2847 CYA_2847 2863555 2863639 - tRNA-Ser tRNA gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2847 CYA_2848 CYA_2848 scpB scpB 2863854 2864408 + segregation and condensation protein B identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2848 CYA_2849 CYA_2849 CYA_2849 2864615 2865265 - antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578 gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2849 CYA_2850 CYA_2850 CYA_2850 2865498 2866601 + conserved hypothetical protein identified by similarity to PIR:AD1911 gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2850 CYA_2851 CYA_2851 CYA_2851 2866651 2867733 - transporter%2C small conductance mechanosensitive ion channel (MscS) family identified by match to protein family HMM PF00924 gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2851 CYA_2852 CYA_2852 CYA_2852 2867888 2868757 - phospholipase/carboxylesterase identified by match to protein family HMM PF02230 gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2852 CYA_2853 CYA_2853 CYA_2853 2868880 2869464 - CAAX amino terminal protease family protein identified by match to protein family HMM PF02517 gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2853 CYA_2854 CYA_2854 CYA_2854 2869616 2870695 - polysaccharide pyruvyl transferase identified by match to protein family HMM PF04230 gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2854 CYA_2855 CYA_2855 CYA_2855 2871121 2871414 - hypothetical protein identified by Glimmer2%3B putative gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2855 CYA_2856 CYA_2856 CYA_2856 2871556 2873538 + penicillin-binding protein%2C 1A family identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074 gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2856 CYA_2857 CYA_2857 CYA_2857 2873535 2873894 + hypothetical protein identified by Glimmer2%3B putative gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2857 CYA_2858 CYA_2858 sodB sodB 2874084 2874683 + superoxide dismutase%2C Fe identified by similarity to SP:P50061%3B match to protein family HMM PF00081%3B match to protein family HMM PF02777 gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2858 CYA_2859 CYA_2859 CYA_2859 2874783 2876375 - serine/threonine protein kinase identified by similarity to GB:AAD42859.1%3B match to protein family HMM PF00069 gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2859 CYA_2860 CYA_2860 CYA_2860 2876391 2876576 + hypothetical protein identified by Glimmer2%3B putative gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2860 CYA_2861 CYA_2861 CYA_2861 2876637 2878715 + transporter%2C monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00582%3B match to protein family HMM PF00999 gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2861 CYA_2862 CYA_2862 glyS glyS 2879174 2881366 + glycyl-tRNA synthetase%2C beta subunit identified by match to protein family HMM PF02092%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00211 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2862 CYA_2863 CYA_2863 CYA_2863 2881409 2882332 - fructosamine kinase family protein identified by match to protein family HMM PF01636%3B match to protein family HMM PF03881 gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2863 CYA_2864 CYA_2864 CYA_2864 2882340 2882792 - conserved hypothetical protein identified by similarity to GB:BAC09213.1 gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2864 CYA_2865 CYA_2865 CYA_2865 2882905 2883444 - putative small GTP-binding protein identified by match to protein family HMM PF03029 gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2865 CYA_2866 CYA_2866 CYA_2866 2883501 2884055 - conserved hypothetical protein identified by similarity to GB:BAC09541.1 gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2866 CYA_2867 CYA_2867 CYA_2867 2884109 2884477 - roadblock/LC7 domain family identified by match to protein family HMM PF03259 gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2867 CYA_2868 CYA_2868 CYA_2868 2884602 2885483 - conserved hypothetical protein identified by similarity to GB:BAC09544.1 gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2868 CYA_2869 CYA_2869 CYA_2869 2885818 2886651 - conserved hypothetical protein identified by similarity to GB:BAC09544.1 gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2869 CYA_2870 CYA_2870 CYA_2870 2886813 2887649 - conserved hypothetical protein gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2870 CYA_2871 CYA_2871 CYA_2871 2887938 2890445 - copper-translocating P-type ATPase identified by similarity to SP:P37279%3B similarity to SP:P37385%3B match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2871 CYA_2872 CYA_2872 CYA_2872 2890538 2890807 - conserved hypothetical protein gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2872 CYA_2873 CYA_2873 fabF fabF 2890820 2892085 - 3-oxoacyl-[acyl-carrier-protein] synthase II identified by similarity to SP:P73283%3B match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2873 CYA_2874 CYA_2874 acpP acpP 2892183 2892428 - acyl carrier protein identified by match to protein family HMM PF00550%3B match to protein family HMM TIGR00517 gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2874 CYA_2875 CYA_2875 rpsF rpsF 2892660 2892950 + ribosomal protein S6 identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166 gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2875 CYA_2876 CYA_2876 CYA_2876 2893038 2893436 + putative single-strand binding protein identified by match to protein family HMM PF00436 gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2876 CYA_2877 CYA_2877 CYA_2877 2893463 2894092 + zinc carboxypeptidase identified by match to protein family HMM PF00246 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2877 CYA_2878 CYA_2878 CYA_2878 2894125 2894838 + universal stress protein family identified by match to protein family HMM PF00582 gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2878 CYA_2879 CYA_2879 CYA_2879 2894859 2896280 - hypothetical protein identified by Glimmer2%3B putative gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2879 CYA_2880 CYA_2880 CYA_2880 2896298 2897866 - conserved hypothetical protein gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2880 CYA_2881 CYA_2881 CYA_2881 2897891 2898676 - putative membrane protein gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2881 CYA_2882 CYA_2882 CYA_2882 2898673 2899683 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2882 CYA_2883 CYA_2883 purM purM 2899886 2900941 - phosphoribosylformylglycinamidine cyclo-ligase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878 gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2883 CYA_2884 CYA_2884 CYA_2884 2901087 2902190 + rare lipoprotein A family protein identified by match to protein family HMM PF03330%3B match to protein family HMM TIGR00413 gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2884 CYA_2885 CYA_2885 CYA_2885 2902191 2903213 - response regulator identified by match to protein family HMM PF00072 gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2885 CYA_2886 CYA_2886 CYA_2886 2903225 2906293 - sensory box histidine kinase identified by match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM PF07568%3B match to protein family HMM TIGR00229 gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2886 CYA_2887 CYA_2887 prs prs 2906453 2907451 - ribose-phosphate pyrophosphokinase identified by similarity to SP:Q59988%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR01251 gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2887 CYA_2888 CYA_2888 CYA_2888 2907571 2909103 + sugar ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2888 CYA_2889 CYA_2889 CYA_2889 2909517 2914181 + TM2 domain protein identified by match to protein family HMM PF05154 gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2889 CYA_2890 CYA_2890 CYA_2890 2914272 2915582 + putative rod shape-determining protein RodA identified by match to protein family HMM PF01098 gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2890 CYA_2891 CYA_2891 CYA_2891 2915932 2917158 + aminotransferase%2C class V identified by similarity to OMNI:NT01MC1419%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212 gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2891 CYA_2892 CYA_2892 CYA_2892 2917183 2917791 + conserved hypothetical protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2892 CYA_2893 CYA_2893 uppS uppS 2917951 2918697 - undecaprenyl diphosphate synthase identified by similarity to SP:P58563%3B match to protein family HMM PF01255%3B match to protein family HMM TIGR00055 gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2893 CYA_2894 CYA_2894 CYA_2894 2918703 2919626 - conserved hypothetical protein TIGR00159 identified by similarity to GB:BAC09314.1%3B match to protein family HMM PF02457%3B match to protein family HMM TIGR00159 gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2894 CYA_2895 CYA_2895 lysA lysA 2919862 2921238 - diaminopimelate decarboxylase identified by similarity to SP:P23630%3B match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048 gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2895 CYA_2896 CYA_2896 CYA_2896 2921457 2921542 + tRNA-Tyr tRNA gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2896 CYA_2897 CYA_2897 miaB miaB 2921618 2922979 - tRNA-i(6)A37 thiotransferase enzyme MiaB identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574 gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2897 CYA_2898 CYA_2898 CYA_2898 2921547 2921618 + tRNA-Thr tRNA gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2898 CYA_2899 CYA_2899 purA purA 2923162 2924511 - adenylosuccinate synthetase identified by match to protein family HMM PF00709%3B match to protein family HMM TIGR00184 gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2899 CYA_2900 CYA_2900 CYA_2900 2924669 2926240 - peptidase family S41%2C nonpeptidase-like protein identified by match to protein family HMM PF03572 gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2900 CYA_2901 CYA_2901 CYA_2901 2926369 2926956 - conserved hypothetical protein identified by match to protein family HMM PF05685 gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2901 CYA_2902 CYA_2902 CYA_2902 2926874 2928259 - hypothetical protein identified by Glimmer2%3B putative gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2902 CYA_2903 CYA_2903 smc smc 2928366 2931908 - chromosome segregation protein SMC identified by match to protein family HMM PF02463%3B match to protein family HMM PF02483%3B match to protein family HMM PF06470%3B match to protein family HMM TIGR00650%3B match to protein family HMM TIGR02169 gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2903 CYA_2904 CYA_2904 rnpA rnpA 2931984 2932364 - ribonuclease P identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188 gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2904 CYA_2905 CYA_2905 rpmH rpmH 2932455 2932595 - ribosomal protein L34 identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030 gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=CYA_2905