Syn6312_0001 SM00382 ATPases associated with a variety of cellular activities Syn6312_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Syn6312_0006 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_0023 SM00487 DEAD-like helicases superfamily Syn6312_0023 SM00490 helicase superfamily c-terminal domain Syn6312_0023 SM01142 Syn6312_0023 Syn6312_0024 SM00073 Histidine Phosphotransfer domain Syn6312_0024 SM00260 Two component signalling adaptor domain Syn6312_0024 SM00387 Histidine kinase-like ATPases Syn6312_0024 SM00448 cheY-homologous receiver domain Syn6312_0024 SM01231 Syn6312_0024 Syn6312_0025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Syn6312_0025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_0026 SM00260 Two component signalling adaptor domain Syn6312_0027 SM00448 cheY-homologous receiver domain Syn6312_0039 SM00363 S4 RNA-binding domain Syn6312_0045 SM00470 ParB-like nuclease domain Syn6312_0046 SM00028 Tetratricopeptide repeats Syn6312_0049 SM00421 helix_turn_helix, Lux Regulon Syn6312_0049 SM00448 cheY-homologous receiver domain Syn6312_0058 SM00644 Syn6312_0058 Syn6312_0063 SM00853 MutL C terminal dimerisation domain Syn6312_0063 SM01340 Syn6312_0063 Syn6312_0065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_0065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_0065 SM00387 Histidine kinase-like ATPases Syn6312_0065 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_0065 SM00448 cheY-homologous receiver domain Syn6312_0067 SM00191 Integrin alpha (beta-propellor repeats). Syn6312_0067 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Syn6312_0067 SM00560 LamG-like jellyroll fold domain Syn6312_0073 SM00382 ATPases associated with a variety of cellular activities Syn6312_0095 SM00382 ATPases associated with a variety of cellular activities Syn6312_0099 SM00465 GIY-YIG type nucleases (URI domain) Syn6312_0103 SM00897 FIST N domain Syn6312_0103 SM01204 Syn6312_0103 Syn6312_0108 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_0108 SM00387 Histidine kinase-like ATPases Syn6312_0108 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_0109 SM00448 cheY-homologous receiver domain Syn6312_0109 SM00862 Transcriptional regulatory protein, C terminal Syn6312_0119 SM00382 ATPases associated with a variety of cellular activities Syn6312_0120 SM00028 Tetratricopeptide repeats Syn6312_0124 SM00861 Transketolase, pyrimidine binding domain Syn6312_0129 SM00567 E-Z type HEAT repeats Syn6312_0133 SM00052 Putative diguanylate phosphodiesterase Syn6312_0133 SM00267 diguanylate cyclase Syn6312_0133 SM00448 cheY-homologous receiver domain Syn6312_0134 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_0134 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_0134 SM00091 PAS domain Syn6312_0134 SM00387 Histidine kinase-like ATPases Syn6312_0134 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_0139 SM00833 Cobalamin synthesis protein cobW C-terminal domain Syn6312_0140 SM01022 Syn6312_0140 Syn6312_0148 SM00327 von Willebrand factor (vWF) type A domain Syn6312_0150 SM00271 DnaJ molecular chaperone homology domain Syn6312_0154 SM00382 ATPases associated with a variety of cellular activities Syn6312_0166 SM00091 PAS domain Syn6312_0166 SM00387 Histidine kinase-like ATPases Syn6312_0166 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_0166 SM00448 cheY-homologous receiver domain Syn6312_0169 SM00387 Histidine kinase-like ATPases Syn6312_0169 SM00433 TopoisomeraseII Syn6312_0179 SM01234 Syn6312_0179 Syn6312_0182 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_0194 SM00933 Syn6312_0194 Syn6312_0197 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_0203 SM00434 DNA Topoisomerase IV Syn6312_0215 SM00563 Phosphate acyltransferases Syn6312_0226 SM00248 ankyrin repeats Syn6312_0227 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_0246 SM00244 prohibitin homologues Syn6312_0255 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_0257 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_0265 SM00988 UreE urease accessory protein, N-terminal domain Syn6312_0273 SM01247 Syn6312_0273 Syn6312_0274 SM01248 Syn6312_0274 Syn6312_0279 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_0279 SM00245 tail specific protease Syn6312_0297 SM00382 ATPases associated with a variety of cellular activities Syn6312_0323 SM00271 DnaJ molecular chaperone homology domain Syn6312_0334 SM00382 ATPases associated with a variety of cellular activities Syn6312_0340 SM00849 Metallo-beta-lactamase superfamily Syn6312_0346 SM00382 ATPases associated with a variety of cellular activities Syn6312_0350 SM00382 ATPases associated with a variety of cellular activities Syn6312_0350 SM00393 Putative single-stranded nucleic acids-binding domain Syn6312_0352 SM00938 Nitrogen regulatory protein P-II Syn6312_0357 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_0366 SM00116 Domain in cystathionine beta-synthase and other proteins. Syn6312_0380 SM00363 S4 RNA-binding domain Syn6312_0397 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_0401 SM00382 ATPases associated with a variety of cellular activities Syn6312_0403 SM00646 Syn6312_0403 Syn6312_0405 SM00487 DEAD-like helicases superfamily Syn6312_0405 SM00490 helicase superfamily c-terminal domain Syn6312_0405 SM00982 Syn6312_0405 Syn6312_0405 SM01058 CarD-like/TRCF domain Syn6312_0417 SM00028 Tetratricopeptide repeats Syn6312_0425 SM00670 Large family of predicted nucleotide-binding domains Syn6312_0437 SM01211 Syn6312_0437 Syn6312_0446 SM00331 Sigma factor PP2C-like phosphatases Syn6312_0446 SM00448 cheY-homologous receiver domain Syn6312_0447 SM00996 S-adenosyl-L-homocysteine hydrolase Syn6312_0447 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Syn6312_0451 SM00434 DNA Topoisomerase IV Syn6312_0466 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_0466 SM00116 Domain in cystathionine beta-synthase and other proteins. Syn6312_0466 SM00267 diguanylate cyclase Syn6312_0471 SM01228 Syn6312_0471 Syn6312_0482 SM00904 Riboflavin kinase Syn6312_0484 SM00855 Phosphoglycerate mutase family Syn6312_0487 SM00382 ATPases associated with a variety of cellular activities Syn6312_0493 SM00930 Syn6312_0493 Syn6312_0499 SM00382 ATPases associated with a variety of cellular activities Syn6312_0499 SM00962 SRP54-type protein, GTPase domain Syn6312_0499 SM00963 SRP54-type protein, helical bundle domain Syn6312_0500 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_0502 SM00382 ATPases associated with a variety of cellular activities Syn6312_0507 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_0507 SM00419 helix_turn_helix, cAMP Regulatory protein Syn6312_0515 SM00849 Metallo-beta-lactamase superfamily Syn6312_0519 SM00382 ATPases associated with a variety of cellular activities Syn6312_0522 SM01409 Syn6312_0522 Syn6312_0530 SM00937 Syn6312_0530 Syn6312_0531 SM00363 S4 RNA-binding domain Syn6312_0531 SM01390 Syn6312_0531 Syn6312_0532 SM00382 ATPases associated with a variety of cellular activities Syn6312_0545 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Syn6312_0549 SM00271 DnaJ molecular chaperone homology domain Syn6312_0551 SM00382 ATPases associated with a variety of cellular activities Syn6312_0555 SM00271 DnaJ molecular chaperone homology domain Syn6312_0563 SM00646 Syn6312_0563 Syn6312_0567 SM00967 RNA 2'-O ribose methyltransferase substrate binding Syn6312_0571 SM00955 Syn6312_0571 Syn6312_0573 SM00756 Syn6312_0573 Syn6312_0581 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Syn6312_0590 SM00642 Alpha-amylase domain Syn6312_0593 SM00854 Bacterial capsule synthesis protein PGA_cap Syn6312_0612 SM01329 Syn6312_0612 Syn6312_0616 SM00732 Likely ribonuclease with RNase H fold. Syn6312_0628 SM00322 K homology RNA-binding domain Syn6312_0631 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Syn6312_0631 SM00534 ATPase domain of DNA mismatch repair MUTS family Syn6312_0632 SM00240 Forkhead associated domain Syn6312_0634 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Syn6312_0635 SM00563 Phosphate acyltransferases Syn6312_0657 SM00480 DNA polymerase III beta subunit Syn6312_0662 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Syn6312_0665 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_0679 SM00052 Putative diguanylate phosphodiesterase Syn6312_0679 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_0679 SM00091 PAS domain Syn6312_0679 SM00240 Forkhead associated domain Syn6312_0679 SM00267 diguanylate cyclase Syn6312_0680 SM00448 cheY-homologous receiver domain Syn6312_0682 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_0683 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_0683 SM00387 Histidine kinase-like ATPases Syn6312_0683 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_0683 SM00448 cheY-homologous receiver domain Syn6312_0686 SM00316 Ribosomal protein S1-like RNA-binding domain Syn6312_0691 SM00382 ATPases associated with a variety of cellular activities Syn6312_0716 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_0724 SM00382 ATPases associated with a variety of cellular activities Syn6312_0754 SM00382 ATPases associated with a variety of cellular activities Syn6312_0775 SM00382 ATPases associated with a variety of cellular activities Syn6312_0776 SM01207 Syn6312_0776 Syn6312_0777 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_0787 SM00072 Guanylate kinase homologues. Syn6312_0788 SM00849 Metallo-beta-lactamase superfamily Syn6312_0788 SM00903 Flavin reductase like domain Syn6312_0794 SM00849 Metallo-beta-lactamase superfamily Syn6312_0794 SM00903 Flavin reductase like domain Syn6312_0795 SM00825 Beta-ketoacyl synthase Syn6312_0797 SM00316 Ribosomal protein S1-like RNA-binding domain Syn6312_0797 SM00357 Cold shock protein domain Syn6312_0797 SM00955 Syn6312_0797 Syn6312_0799 SM00062 Bacterial periplasmic substrate-binding proteins Syn6312_0803 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_0803 SM00245 tail specific protease Syn6312_0816 SM00363 S4 RNA-binding domain Syn6312_0817 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_0817 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Syn6312_0828 SM00240 Forkhead associated domain Syn6312_0836 SM00342 helix_turn_helix, arabinose operon control protein Syn6312_0846 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Syn6312_0846 SM00240 Forkhead associated domain Syn6312_0848 SM00644 Syn6312_0848 Syn6312_0854 SM00872 Alpha mannosidase, middle domain Syn6312_0881 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Syn6312_0882 SM00487 DEAD-like helicases superfamily Syn6312_0912 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_0912 SM00382 ATPases associated with a variety of cellular activities Syn6312_0923 SM00360 RNA recognition motif Syn6312_0938 SM00360 RNA recognition motif Syn6312_0943 SM00382 ATPases associated with a variety of cellular activities Syn6312_0946 SM00382 ATPases associated with a variety of cellular activities Syn6312_0957 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_0959 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_0973 SM00912 haemagglutination activity domain Syn6312_0980 SM00849 Metallo-beta-lactamase superfamily Syn6312_0982 SM00460 Transglutaminase/protease-like homologues Syn6312_0986 SM00833 Cobalamin synthesis protein cobW C-terminal domain Syn6312_0987 SM00320 WD40 repeats Syn6312_0991 SM00382 ATPases associated with a variety of cellular activities Syn6312_0997 SM00487 DEAD-like helicases superfamily Syn6312_0997 SM00490 helicase superfamily c-terminal domain Syn6312_1013 SM00382 ATPases associated with a variety of cellular activities Syn6312_1015 SM01034 Sensors of blue-light using FAD Syn6312_1041 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Syn6312_1041 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Syn6312_1043 SM00463 Small MutS-related domain Syn6312_1043 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Syn6312_1043 SM00534 ATPase domain of DNA mismatch repair MUTS family Syn6312_1053 SM00487 DEAD-like helicases superfamily Syn6312_1068 SM00947 Carbonic anhydrase Syn6312_1079 SM00382 ATPases associated with a variety of cellular activities Syn6312_1086 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_1087 SM00959 Rho termination factor, N-terminal domain Syn6312_1089 SM00421 helix_turn_helix, Lux Regulon Syn6312_1089 SM00448 cheY-homologous receiver domain Syn6312_1094 SM00382 ATPases associated with a variety of cellular activities Syn6312_1100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Syn6312_1109 SM00852 Probable molybdopterin binding domain Syn6312_1110 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_1114 SM00825 Beta-ketoacyl synthase Syn6312_1133 SM00530 Helix-turn-helix XRE-family like proteins Syn6312_1134 SM00530 Helix-turn-helix XRE-family like proteins Syn6312_1167 SM00959 Rho termination factor, N-terminal domain Syn6312_1174 SM00411 bacterial (prokaryotic) histone like domain Syn6312_1192 SM00487 DEAD-like helicases superfamily Syn6312_1192 SM00490 helicase superfamily c-terminal domain Syn6312_1209 SM01350 Syn6312_1209 Syn6312_1212 SM01093 Syn6312_1212 Syn6312_1214 SM00861 Transketolase, pyrimidine binding domain Syn6312_1221 SM00878 Biotin carboxylase C-terminal domain Syn6312_1223 SM00382 ATPases associated with a variety of cellular activities Syn6312_1235 SM00448 cheY-homologous receiver domain Syn6312_1235 SM00862 Transcriptional regulatory protein, C terminal Syn6312_1237 SM01403 Syn6312_1237 Syn6312_1239 SM00838 Elongation factor G C-terminus Syn6312_1239 SM00889 Elongation factor G, domain IV Syn6312_1243 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_1245 SM00663 RNA polymerase I subunit A N-terminus Syn6312_1259 SM00240 Forkhead associated domain Syn6312_1270 SM00062 Bacterial periplasmic substrate-binding proteins Syn6312_1270 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Syn6312_1275 SM00642 Alpha-amylase domain Syn6312_1282 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_1282 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_1282 SM00091 PAS domain Syn6312_1282 SM00267 diguanylate cyclase Syn6312_1295 SM00382 ATPases associated with a variety of cellular activities Syn6312_1303 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_1303 SM00876 Biotin and Thiamin Synthesis associated domain Syn6312_1317 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Syn6312_1323 SM00464 Found in ATP-dependent protease La (LON) Syn6312_1327 SM00320 WD40 repeats Syn6312_1328 SM00320 WD40 repeats Syn6312_1334 SM00271 DnaJ molecular chaperone homology domain Syn6312_1335 SM00382 ATPases associated with a variety of cellular activities Syn6312_1339 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_1339 SM00387 Histidine kinase-like ATPases Syn6312_1339 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_1339 SM00448 cheY-homologous receiver domain Syn6312_1370 SM00530 Helix-turn-helix XRE-family like proteins Syn6312_1373 SM00877 Syn6312_1373 Syn6312_1376 SM00073 Histidine Phosphotransfer domain Syn6312_1376 SM00260 Two component signalling adaptor domain Syn6312_1376 SM00387 Histidine kinase-like ATPases Syn6312_1376 SM00448 cheY-homologous receiver domain Syn6312_1376 SM01231 Syn6312_1376 Syn6312_1377 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_1377 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Syn6312_1377 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_1378 SM00260 Two component signalling adaptor domain Syn6312_1379 SM00448 cheY-homologous receiver domain Syn6312_1380 SM00448 cheY-homologous receiver domain Syn6312_1382 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_1391 SM00917 LeuA allosteric (dimerisation) domain Syn6312_1405 SM00382 ATPases associated with a variety of cellular activities Syn6312_1407 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_1407 SM00465 GIY-YIG type nucleases (URI domain) Syn6312_1422 SM00062 Bacterial periplasmic substrate-binding proteins Syn6312_1425 SM00028 Tetratricopeptide repeats Syn6312_1436 SM00020 Trypsin-like serine protease Syn6312_1437 SM00271 DnaJ molecular chaperone homology domain Syn6312_1445 SM00116 Domain in cystathionine beta-synthase and other proteins. Syn6312_1447 SM00382 ATPases associated with a variety of cellular activities Syn6312_1448 SM00567 E-Z type HEAT repeats Syn6312_1459 SM00028 Tetratricopeptide repeats Syn6312_1460 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_1462 SM00327 von Willebrand factor (vWF) type A domain Syn6312_1462 SM00382 ATPases associated with a variety of cellular activities Syn6312_1468 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_1489 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_1489 SM00382 ATPases associated with a variety of cellular activities Syn6312_1509 SM00822 Syn6312_1509 Syn6312_1514 SM00798 AICARFT/IMPCHase bienzyme Syn6312_1514 SM00851 MGS-like domain Syn6312_1522 SM00387 Histidine kinase-like ATPases Syn6312_1522 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_1522 SM01248 Syn6312_1522 Syn6312_1528 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Syn6312_1532 SM00267 diguanylate cyclase Syn6312_1532 SM00448 cheY-homologous receiver domain Syn6312_1533 SM00448 cheY-homologous receiver domain Syn6312_1534 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_1534 SM00091 PAS domain Syn6312_1534 SM00387 Histidine kinase-like ATPases Syn6312_1535 SM00883 Chaperonin 10 Kd subunit Syn6312_1538 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_1542 SM00240 Forkhead associated domain Syn6312_1543 SM00448 cheY-homologous receiver domain Syn6312_1543 SM00862 Transcriptional regulatory protein, C terminal Syn6312_1547 SM00382 ATPases associated with a variety of cellular activities Syn6312_1562 SM00320 WD40 repeats Syn6312_1566 SM00998 Adenylosuccinate lyase C-terminus Syn6312_1570 SM01240 Syn6312_1570 Syn6312_1572 SM00917 LeuA allosteric (dimerisation) domain Syn6312_1585 SM00840 Syn6312_1585 Syn6312_1590 SM00855 Phosphoglycerate mutase family Syn6312_1595 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Syn6312_1598 SM00968 SMC proteins Flexible Hinge Domain Syn6312_1603 SM00331 Sigma factor PP2C-like phosphatases Syn6312_1603 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Syn6312_1604 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_1604 SM00240 Forkhead associated domain Syn6312_1605 SM00331 Sigma factor PP2C-like phosphatases Syn6312_1605 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Syn6312_1606 SM00899 Syn6312_1606 Syn6312_1612 SM00382 ATPases associated with a variety of cellular activities Syn6312_1621 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Syn6312_1622 SM00861 Transketolase, pyrimidine binding domain Syn6312_1632 SM00567 E-Z type HEAT repeats Syn6312_1672 SM01130 Syn6312_1672 Syn6312_1673 SM00849 Metallo-beta-lactamase superfamily Syn6312_1676 SM00382 ATPases associated with a variety of cellular activities Syn6312_1690 SM00382 ATPases associated with a variety of cellular activities Syn6312_1705 SM00347 helix_turn_helix multiple antibiotic resistance protein Syn6312_1708 SM00341 Helicase and RNase D C-terminal Syn6312_1708 SM00487 DEAD-like helicases superfamily Syn6312_1708 SM00490 helicase superfamily c-terminal domain Syn6312_1708 SM00956 Syn6312_1708 Syn6312_1714 SM01321 Syn6312_1714 Syn6312_1717 SM00382 ATPases associated with a variety of cellular activities Syn6312_1719 SM00382 ATPases associated with a variety of cellular activities Syn6312_1758 SM00961 Ribulose bisphosphate carboxylase, small chain Syn6312_1760 SM00877 Syn6312_1760 Syn6312_1761 SM00877 Syn6312_1761 Syn6312_1775 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_1790 SM00271 DnaJ molecular chaperone homology domain Syn6312_1794 SM00421 helix_turn_helix, Lux Regulon Syn6312_1794 SM00448 cheY-homologous receiver domain Syn6312_1803 SM01387 Syn6312_1803 Syn6312_1806 SM00062 Bacterial periplasmic substrate-binding proteins Syn6312_1809 SM00052 Putative diguanylate phosphodiesterase Syn6312_1809 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_1809 SM00091 PAS domain Syn6312_1809 SM00267 diguanylate cyclase Syn6312_1811 SM00831 Cation transporter/ATPase, N-terminus Syn6312_1813 SM00387 Histidine kinase-like ATPases Syn6312_1813 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_1822 SM00382 ATPases associated with a variety of cellular activities Syn6312_1836 SM00382 ATPases associated with a variety of cellular activities Syn6312_1844 SM00400 zinc finger Syn6312_1844 SM00493 Syn6312_1844 Syn6312_1845 SM00382 ATPases associated with a variety of cellular activities Syn6312_1849 SM00481 DNA polymerase alpha chain like domain Syn6312_1860 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_1883 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Syn6312_1883 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Syn6312_1884 SM00649 Ribosomal protein L11/L12 Syn6312_1898 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Syn6312_1901 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_1901 SM00091 PAS domain Syn6312_1901 SM00267 diguanylate cyclase Syn6312_1911 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_1911 SM01080 Syn6312_1911 Syn6312_1920 SM00387 Histidine kinase-like ATPases Syn6312_1920 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_1924 SM00422 helix_turn_helix, mercury resistance Syn6312_1940 SM00382 ATPases associated with a variety of cellular activities Syn6312_1960 SM01011 Aminopeptidase P, N-terminal domain Syn6312_1980 SM00382 ATPases associated with a variety of cellular activities Syn6312_1991 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Syn6312_1995 SM00028 Tetratricopeptide repeats Syn6312_2000 SM00028 Tetratricopeptide repeats Syn6312_2004 SM00052 Putative diguanylate phosphodiesterase Syn6312_2004 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_2004 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_2004 SM00091 PAS domain Syn6312_2004 SM00267 diguanylate cyclase Syn6312_2005 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Syn6312_2005 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Syn6312_2005 SM00493 Syn6312_2005 Syn6312_2009 SM00961 Ribulose bisphosphate carboxylase, small chain Syn6312_2018 SM00877 Syn6312_2018 Syn6312_2019 SM00108 Bulb-type mannose-specific lectin Syn6312_2020 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_2020 SM01080 Syn6312_2020 Syn6312_2021 SM00829 Enoylreductase Syn6312_2029 SM00829 Enoylreductase Syn6312_2030 SM00637 Syn6312_2030 Syn6312_2053 SM00974 Syn6312_2053 Syn6312_2054 SM00487 DEAD-like helicases superfamily Syn6312_2098 SM01060 Syn6312_2098 Syn6312_2105 SM00382 ATPases associated with a variety of cellular activities Syn6312_2106 SM00450 Rhodanese Homology Domain Syn6312_2107 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_2110 SM00535 Ribonuclease III family Syn6312_2115 SM00028 Tetratricopeptide repeats Syn6312_2116 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Syn6312_2132 SM00642 Alpha-amylase domain Syn6312_2134 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_2134 SM00331 Sigma factor PP2C-like phosphatases Syn6312_2143 SM00479 Syn6312_2143 Syn6312_2146 SM00028 Tetratricopeptide repeats Syn6312_2146 SM00448 cheY-homologous receiver domain Syn6312_2155 SM00240 Forkhead associated domain Syn6312_2157 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_2157 SM00240 Forkhead associated domain Syn6312_2163 SM00788 Adenylosuccinate synthetase Syn6312_2165 SM00267 diguanylate cyclase Syn6312_2165 SM00448 cheY-homologous receiver domain Syn6312_2166 SM00387 Histidine kinase-like ATPases Syn6312_2166 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2166 SM00448 cheY-homologous receiver domain Syn6312_2171 SM00479 Syn6312_2171 Syn6312_2173 SM00382 ATPases associated with a variety of cellular activities Syn6312_2177 SM01004 Delta-aminolevulinic acid dehydratase Syn6312_2182 SM00859 Semialdehyde dehydrogenase, NAD binding domain Syn6312_2188 SM00947 Carbonic anhydrase Syn6312_2193 SM00450 Rhodanese Homology Domain Syn6312_2198 SM00419 helix_turn_helix, cAMP Regulatory protein Syn6312_2205 SM00507 HNH nucleases Syn6312_2208 SM00382 ATPases associated with a variety of cellular activities Syn6312_2221 SM01329 Syn6312_2221 Syn6312_2222 SM00331 Sigma factor PP2C-like phosphatases Syn6312_2246 SM00195 Dual specificity phosphatase, catalytic domain Syn6312_2251 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Syn6312_2251 SM00637 Syn6312_2251 Syn6312_2254 SM00155 Phospholipase D. Active site motifs. Syn6312_2254 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_2255 SM00382 ATPases associated with a variety of cellular activities Syn6312_2255 SM00962 SRP54-type protein, GTPase domain Syn6312_2255 SM00963 SRP54-type protein, helical bundle domain Syn6312_2263 SM00240 Forkhead associated domain Syn6312_2263 SM00382 ATPases associated with a variety of cellular activities Syn6312_2268 SM00563 Phosphate acyltransferases Syn6312_2271 SM00382 ATPases associated with a variety of cellular activities Syn6312_2299 SM00448 cheY-homologous receiver domain Syn6312_2299 SM00862 Transcriptional regulatory protein, C terminal Syn6312_2300 SM00382 ATPases associated with a variety of cellular activities Syn6312_2303 SM00382 ATPases associated with a variety of cellular activities Syn6312_2304 SM00873 B3/4 domain Syn6312_2304 SM00874 tRNA synthetase B5 domain Syn6312_2304 SM00896 Ferredoxin-fold anticodon binding domain Syn6312_2314 SM00382 ATPases associated with a variety of cellular activities Syn6312_2315 SM00226 Low molecular weight phosphatase family Syn6312_2329 SM00240 Forkhead associated domain Syn6312_2329 SM00382 ATPases associated with a variety of cellular activities Syn6312_2364 SM00382 ATPases associated with a variety of cellular activities Syn6312_2367 SM00933 Syn6312_2367 Syn6312_2378 SM00316 Ribosomal protein S1-like RNA-binding domain Syn6312_2392 SM00562 Syn6312_2392 Syn6312_2400 SM00240 Forkhead associated domain Syn6312_2408 SM00650 Ribosomal RNA adenine dimethylases Syn6312_2409 SM01192 Syn6312_2409 Syn6312_2409 SM01193 Syn6312_2409 Syn6312_2411 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Syn6312_2411 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Syn6312_2416 SM00478 endonuclease III Syn6312_2416 SM00525 Syn6312_2416 Syn6312_2426 SM00460 Transglutaminase/protease-like homologues Syn6312_2427 SM00855 Phosphoglycerate mutase family Syn6312_2430 SM00331 Sigma factor PP2C-like phosphatases Syn6312_2430 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Syn6312_2436 SM00382 ATPases associated with a variety of cellular activities Syn6312_2441 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Syn6312_2449 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Syn6312_2454 SM01018 B12 binding domain Syn6312_2472 SM00382 ATPases associated with a variety of cellular activities Syn6312_2479 SM00382 ATPases associated with a variety of cellular activities Syn6312_2482 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Syn6312_2486 SM00487 DEAD-like helicases superfamily Syn6312_2486 SM00490 helicase superfamily c-terminal domain Syn6312_2491 SM00836 DALR anticodon binding domain Syn6312_2491 SM01016 Arginyl tRNA synthetase N terminal dom Syn6312_2494 SM00052 Putative diguanylate phosphodiesterase Syn6312_2494 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_2494 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_2494 SM00091 PAS domain Syn6312_2494 SM00267 diguanylate cyclase Syn6312_2505 SM00567 E-Z type HEAT repeats Syn6312_2506 SM01094 CpcD/allophycocyanin linker domain Syn6312_2507 SM01094 CpcD/allophycocyanin linker domain Syn6312_2510 SM00345 helix_turn_helix gluconate operon transcriptional repressor Syn6312_2511 SM00833 Cobalamin synthesis protein cobW C-terminal domain Syn6312_2514 SM00073 Histidine Phosphotransfer domain Syn6312_2518 SM01011 Aminopeptidase P, N-terminal domain Syn6312_2521 SM01209 Syn6312_2521 Syn6312_2521 SM01210 Syn6312_2521 Syn6312_2523 SM00244 prohibitin homologues Syn6312_2525 SM00028 Tetratricopeptide repeats Syn6312_2525 SM00271 DnaJ molecular chaperone homology domain Syn6312_2543 SM00989 Syn6312_2543 Syn6312_2546 SM00989 Syn6312_2546 Syn6312_2548 SM00028 Tetratricopeptide repeats Syn6312_2549 SM01001 AIR carboxylase Syn6312_2562 SM00382 ATPases associated with a variety of cellular activities Syn6312_2563 SM00382 ATPases associated with a variety of cellular activities Syn6312_2564 SM00855 Phosphoglycerate mutase family Syn6312_2575 SM01118 Syn6312_2575 Syn6312_2580 SM00957 SecA DEAD-like domain Syn6312_2580 SM00958 SecA preprotein cross-linking domain Syn6312_2592 SM01060 Syn6312_2592 Syn6312_2608 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Syn6312_2608 SM01080 Syn6312_2608 Syn6312_2610 SM00382 ATPases associated with a variety of cellular activities Syn6312_2613 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Syn6312_2614 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_2615 SM00091 PAS domain Syn6312_2615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_2615 SM00387 Histidine kinase-like ATPases Syn6312_2615 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2629 SM00382 ATPases associated with a variety of cellular activities Syn6312_2634 SM00419 helix_turn_helix, cAMP Regulatory protein Syn6312_2646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_2646 SM00387 Histidine kinase-like ATPases Syn6312_2646 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2646 SM00448 cheY-homologous receiver domain Syn6312_2647 SM00331 Sigma factor PP2C-like phosphatases Syn6312_2647 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2647 SM00448 cheY-homologous receiver domain Syn6312_2648 SM00448 cheY-homologous receiver domain Syn6312_2649 SM00925 MltA specific insert domain Syn6312_2651 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Syn6312_2662 SM01091 Transporter associated domain Syn6312_2667 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_2670 SM00382 ATPases associated with a variety of cellular activities Syn6312_2683 SM00191 Integrin alpha (beta-propellor repeats). Syn6312_2683 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Syn6312_2684 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Syn6312_2684 SM01232 Syn6312_2684 Syn6312_2709 SM00644 Syn6312_2709 Syn6312_2711 SM00646 Syn6312_2711 Syn6312_2725 SM00421 helix_turn_helix, Lux Regulon Syn6312_2725 SM00448 cheY-homologous receiver domain Syn6312_2726 SM00387 Histidine kinase-like ATPases Syn6312_2726 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2729 SM00507 HNH nucleases Syn6312_2737 SM00448 cheY-homologous receiver domain Syn6312_2737 SM00862 Transcriptional regulatory protein, C terminal Syn6312_2742 SM00880 Syn6312_2742 Syn6312_2764 SM00341 Helicase and RNase D C-terminal Syn6312_2764 SM00487 DEAD-like helicases superfamily Syn6312_2764 SM00490 helicase superfamily c-terminal domain Syn6312_2764 SM00956 Syn6312_2764 Syn6312_2775 SM00959 Rho termination factor, N-terminal domain Syn6312_2783 SM00387 Histidine kinase-like ATPases Syn6312_2783 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2795 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Syn6312_2797 SM00422 helix_turn_helix, mercury resistance Syn6312_2800 SM00448 cheY-homologous receiver domain Syn6312_2800 SM00862 Transcriptional regulatory protein, C terminal Syn6312_2816 SM00487 DEAD-like helicases superfamily Syn6312_2816 SM00490 helicase superfamily c-terminal domain Syn6312_2823 SM00271 DnaJ molecular chaperone homology domain Syn6312_2835 SM00387 Histidine kinase-like ATPases Syn6312_2835 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_2836 SM00448 cheY-homologous receiver domain Syn6312_2836 SM00862 Transcriptional regulatory protein, C terminal Syn6312_2839 SM00860 SMI1 / KNR4 family Syn6312_2872 SM00271 DnaJ molecular chaperone homology domain Syn6312_2884 SM01321 Syn6312_2884 Syn6312_2898 SM00731 SprT homologues. Syn6312_2899 SM00507 HNH nucleases Syn6312_2901 SM00318 Staphylococcal nuclease homologues Syn6312_2911 SM00382 ATPases associated with a variety of cellular activities Syn6312_2915 SM00382 ATPases associated with a variety of cellular activities Syn6312_2915 SM00487 DEAD-like helicases superfamily Syn6312_2919 SM00052 Putative diguanylate phosphodiesterase Syn6312_2919 SM00267 diguanylate cyclase Syn6312_2919 SM00448 cheY-homologous receiver domain Syn6312_2932 SM00877 Syn6312_2932 Syn6312_2954 SM00382 ATPases associated with a variety of cellular activities Syn6312_2961 SM00382 ATPases associated with a variety of cellular activities Syn6312_2966 SM00530 Helix-turn-helix XRE-family like proteins Syn6312_2968 SM01207 Syn6312_2968 Syn6312_2986 SM00240 Forkhead associated domain Syn6312_3007 SM00861 Transketolase, pyrimidine binding domain Syn6312_3010 SM00851 MGS-like domain Syn6312_3010 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Syn6312_3019 SM00235 Zinc-dependent metalloprotease Syn6312_3020 SM00829 Enoylreductase Syn6312_3023 SM00028 Tetratricopeptide repeats Syn6312_3028 SM00382 ATPases associated with a variety of cellular activities Syn6312_3040 SM00530 Helix-turn-helix XRE-family like proteins Syn6312_3049 SM01230 Syn6312_3049 Syn6312_3063 SM00382 ATPases associated with a variety of cellular activities Syn6312_3065 SM00382 ATPases associated with a variety of cellular activities Syn6312_3075 SM00240 Forkhead associated domain Syn6312_3077 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3077 SM00387 Histidine kinase-like ATPases Syn6312_3077 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3078 SM00864 Tubulin/FtsZ family, GTPase domain Syn6312_3078 SM00865 Tubulin/FtsZ family, C-terminal domain Syn6312_3079 SM01094 CpcD/allophycocyanin linker domain Syn6312_3080 SM00411 bacterial (prokaryotic) histone like domain Syn6312_3082 SM01400 Syn6312_3082 Syn6312_3086 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_3095 SM00360 RNA recognition motif Syn6312_3096 SM00382 ATPases associated with a variety of cellular activities Syn6312_3096 SM01086 C-terminal, D2-small domain, of ClpB protein Syn6312_3101 SM00382 ATPases associated with a variety of cellular activities Syn6312_3101 SM01086 C-terminal, D2-small domain, of ClpB protein Syn6312_3119 SM01248 Syn6312_3119 Syn6312_3125 SM00829 Enoylreductase Syn6312_3130 SM00382 ATPases associated with a variety of cellular activities Syn6312_3131 SM00382 ATPases associated with a variety of cellular activities Syn6312_3132 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3132 SM00240 Forkhead associated domain Syn6312_3132 SM00387 Histidine kinase-like ATPases Syn6312_3132 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3135 SM00271 DnaJ molecular chaperone homology domain Syn6312_3142 SM00316 Ribosomal protein S1-like RNA-binding domain Syn6312_3142 SM00322 K homology RNA-binding domain Syn6312_3144 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_3149 SM00244 prohibitin homologues Syn6312_3151 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_3152 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Syn6312_3157 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_3159 SM00052 Putative diguanylate phosphodiesterase Syn6312_3168 SM00662 RNA polymerases D Syn6312_3172 SM00316 Ribosomal protein S1-like RNA-binding domain Syn6312_3181 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Syn6312_3182 SM01374 Syn6312_3182 Syn6312_3186 SM00322 K homology RNA-binding domain Syn6312_3189 SM01382 Syn6312_3189 Syn6312_3189 SM01383 Syn6312_3189 Syn6312_3194 SM00835 Cupin Syn6312_3197 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. Syn6312_3212 SM00507 HNH nucleases Syn6312_3213 SM01005 Alanine racemase, C-terminal domain Syn6312_3220 SM00382 ATPases associated with a variety of cellular activities Syn6312_3225 SM00028 Tetratricopeptide repeats Syn6312_3226 SM01001 AIR carboxylase Syn6312_3232 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_3236 SM00986 Uracil DNA glycosylase superfamily Syn6312_3236 SM00987 UreE urease accessory protein, C-terminal domain Syn6312_3239 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3241 SM00382 ATPases associated with a variety of cellular activities Syn6312_3245 SM00448 cheY-homologous receiver domain Syn6312_3245 SM00862 Transcriptional regulatory protein, C terminal Syn6312_3246 SM00387 Histidine kinase-like ATPases Syn6312_3246 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3247 SM00363 S4 RNA-binding domain Syn6312_3248 SM00530 Helix-turn-helix XRE-family like proteins Syn6312_3255 SM00852 Probable molybdopterin binding domain Syn6312_3259 SM00642 Alpha-amylase domain Syn6312_3265 SM00474 3'-5' exonuclease Syn6312_3281 SM00981 Syn6312_3281 Syn6312_3301 SM00267 diguanylate cyclase Syn6312_3301 SM00448 cheY-homologous receiver domain Syn6312_3303 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Syn6312_3303 SM00481 DNA polymerase alpha chain like domain Syn6312_3304 SM00028 Tetratricopeptide repeats Syn6312_3309 SM00478 endonuclease III Syn6312_3321 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_3321 SM00493 Syn6312_3321 Syn6312_3327 SM00387 Histidine kinase-like ATPases Syn6312_3327 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3329 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_3329 SM00419 helix_turn_helix, cAMP Regulatory protein Syn6312_3341 SM00490 helicase superfamily c-terminal domain Syn6312_3354 SM00487 DEAD-like helicases superfamily Syn6312_3354 SM00490 helicase superfamily c-terminal domain Syn6312_3362 SM00450 Rhodanese Homology Domain Syn6312_3364 SM00448 cheY-homologous receiver domain Syn6312_3364 SM00862 Transcriptional regulatory protein, C terminal Syn6312_3370 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Syn6312_3370 SM00292 breast cancer carboxy-terminal domain Syn6312_3370 SM00532 Ligase N family Syn6312_3371 SM00989 Syn6312_3371 Syn6312_3383 SM01230 Syn6312_3383 Syn6312_3384 SM00731 SprT homologues. Syn6312_3389 SM00845 GatB domain Syn6312_3391 SM00450 Rhodanese Homology Domain Syn6312_3393 SM00487 DEAD-like helicases superfamily Syn6312_3393 SM00490 helicase superfamily c-terminal domain Syn6312_3395 SM00028 Tetratricopeptide repeats Syn6312_3407 SM00046 Diacylglycerol kinase catalytic domain (presumed) Syn6312_3417 SM00841 Elongation factor P, C-terminal Syn6312_3417 SM01185 Syn6312_3417 Syn6312_3419 SM00448 cheY-homologous receiver domain Syn6312_3419 SM00862 Transcriptional regulatory protein, C terminal Syn6312_3423 SM00382 ATPases associated with a variety of cellular activities Syn6312_3432 SM00421 helix_turn_helix, Lux Regulon Syn6312_3436 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Syn6312_3436 SM00954 Region found in RelA / SpoT proteins Syn6312_3441 SM00382 ATPases associated with a variety of cellular activities Syn6312_3446 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Syn6312_3448 SM00732 Likely ribonuclease with RNase H fold. Syn6312_3450 SM00360 RNA recognition motif Syn6312_3451 SM00729 Elongator protein 3, MiaB family, Radical SAM Syn6312_3452 SM00448 cheY-homologous receiver domain Syn6312_3455 SM00967 RNA 2'-O ribose methyltransferase substrate binding Syn6312_3459 SM00382 ATPases associated with a variety of cellular activities Syn6312_3460 SM00567 E-Z type HEAT repeats Syn6312_3461 SM00838 Elongation factor G C-terminus Syn6312_3465 SM00905 Dihydroneopterin aldolase Syn6312_3477 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Syn6312_3482 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Syn6312_3486 SM00116 Domain in cystathionine beta-synthase and other proteins. Syn6312_3490 SM00347 helix_turn_helix multiple antibiotic resistance protein Syn6312_3492 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Syn6312_3492 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Syn6312_3503 SM00859 Semialdehyde dehydrogenase, NAD binding domain Syn6312_3509 SM00487 DEAD-like helicases superfamily Syn6312_3509 SM00490 helicase superfamily c-terminal domain Syn6312_3510 SM00062 Bacterial periplasmic substrate-binding proteins Syn6312_3516 SM00382 ATPases associated with a variety of cellular activities Syn6312_3530 SM00710 Parallel beta-helix repeats Syn6312_3538 SM00930 Syn6312_3538 Syn6312_3541 SM00448 cheY-homologous receiver domain Syn6312_3543 SM01094 CpcD/allophycocyanin linker domain Syn6312_3547 SM00877 Syn6312_3547 Syn6312_3567 SM00859 Semialdehyde dehydrogenase, NAD binding domain Syn6312_3571 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3571 SM00091 PAS domain Syn6312_3571 SM00387 Histidine kinase-like ATPases Syn6312_3571 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3573 SM00829 Enoylreductase Syn6312_3577 SM00421 helix_turn_helix, Lux Regulon Syn6312_3577 SM00448 cheY-homologous receiver domain Syn6312_3584 SM00287 Bacterial SH3 domain homologues Syn6312_3584 SM00646 Syn6312_3584 Syn6312_3589 SM00382 ATPases associated with a variety of cellular activities Syn6312_3590 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Syn6312_3590 SM00474 3'-5' exonuclease Syn6312_3590 SM00475 5'-3' exonuclease Syn6312_3590 SM00482 DNA polymerase A domain Syn6312_3594 SM00100 Cyclic nucleotide-monophosphate binding domain Syn6312_3602 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Syn6312_3602 SM00245 tail specific protease Syn6312_3604 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Syn6312_3608 SM00909 Sporulation and spore germination Syn6312_3609 SM00347 helix_turn_helix multiple antibiotic resistance protein Syn6312_3613 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3613 SM00387 Histidine kinase-like ATPases Syn6312_3613 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3617 SM00062 Bacterial periplasmic substrate-binding proteins Syn6312_3620 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Syn6312_3626 SM00382 ATPases associated with a variety of cellular activities Syn6312_3629 SM00382 ATPases associated with a variety of cellular activities Syn6312_3631 SM00382 ATPases associated with a variety of cellular activities Syn6312_3635 SM00421 helix_turn_helix, Lux Regulon Syn6312_3635 SM00448 cheY-homologous receiver domain Syn6312_3637 SM00670 Large family of predicted nucleotide-binding domains Syn6312_3638 SM00240 Forkhead associated domain Syn6312_3640 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3640 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_3640 SM00091 PAS domain Syn6312_3640 SM00267 diguanylate cyclase Syn6312_3669 SM00822 Syn6312_3669 Syn6312_3672 SM00448 cheY-homologous receiver domain Syn6312_3673 SM00448 cheY-homologous receiver domain Syn6312_3674 SM00260 Two component signalling adaptor domain Syn6312_3675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Syn6312_3675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Syn6312_3676 SM00073 Histidine Phosphotransfer domain Syn6312_3676 SM00260 Two component signalling adaptor domain Syn6312_3676 SM00387 Histidine kinase-like ATPases Syn6312_3676 SM00448 cheY-homologous receiver domain Syn6312_3676 SM01231 Syn6312_3676 Syn6312_3686 SM00382 ATPases associated with a variety of cellular activities Syn6312_3686 SM00994 ClpX C4-type zinc finger Syn6312_3686 SM01086 C-terminal, D2-small domain, of ClpB protein Syn6312_3691 SM00028 Tetratricopeptide repeats Syn6312_3693 SM00382 ATPases associated with a variety of cellular activities Syn6312_3698 SM00220 Serine/Threonine protein kinases, catalytic domain Syn6312_3700 SM00382 ATPases associated with a variety of cellular activities Syn6312_3701 SM00382 ATPases associated with a variety of cellular activities Syn6312_3701 SM01086 C-terminal, D2-small domain, of ClpB protein Syn6312_3702 SM00460 Transglutaminase/protease-like homologues Syn6312_3704 SM00448 cheY-homologous receiver domain Syn6312_3712 SM00320 WD40 repeats Syn6312_3720 SM00966 SpoVT / AbrB like domain Syn6312_3728 SM00919 Malic enzyme, NAD binding domain Syn6312_3728 SM01274 Syn6312_3728 Syn6312_3730 SM00052 Putative diguanylate phosphodiesterase Syn6312_3730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3730 SM00267 diguanylate cyclase Syn6312_3742 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Syn6312_3742 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Syn6312_3742 SM00091 PAS domain Syn6312_3742 SM00387 Histidine kinase-like ATPases Syn6312_3742 SM00388 His Kinase A (phosphoacceptor) domain Syn6312_3742 SM00448 cheY-homologous receiver domain Syn6312_3752 SM00984 UDP binding domain Syn6312_3758 SM00393 Putative single-stranded nucleic acids-binding domain Syn6312_3793 SM00487 DEAD-like helicases superfamily Syn6312_3793 SM00490 helicase superfamily c-terminal domain