locus-tag	class	description
SynRCC307_0001	COG0592	DNA-directed DNA polymerase activity
SynRCC307_0003	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
SynRCC307_0004	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
SynRCC307_0005	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
SynRCC307_0007	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
SynRCC307_0011	COG0552	protein localization to endoplasmic reticulum
SynRCC307_0012	COG2208	phosphoserine phosphatase activity
SynRCC307_0013	COG0165	Argininosuccinate lyase
SynRCC307_0014	COG0724	RNA recognition motif
SynRCC307_0015	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
SynRCC307_0017	COG2081	HI0933 family
SynRCC307_0020	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
SynRCC307_0021	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
SynRCC307_0022	COG0484	heat shock protein binding
SynRCC307_0024	COG1162	GTPase activity
SynRCC307_0025	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
SynRCC307_0026	COG0812	UDP-N-acetylmuramate dehydrogenase activity
SynRCC307_0027	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
SynRCC307_0028	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
SynRCC307_0029	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
SynRCC307_0030	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SynRCC307_0031	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
SynRCC307_0032	COG0511	ligase activity, forming carbon-carbon bonds
SynRCC307_0033	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
SynRCC307_0038	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
SynRCC307_0042	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
SynRCC307_0049	COG0518	GMP synthase (glutamine-hydrolyzing) activity
SynRCC307_0049	COG0519	Catalyzes the synthesis of GMP from XMP
SynRCC307_0053	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_0053	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
SynRCC307_0054	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
SynRCC307_0056	COG2022	thiamine diphosphate biosynthetic process
SynRCC307_0059	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
SynRCC307_0060	COG0291	Belongs to the bacterial ribosomal protein bL35 family
SynRCC307_0061	COG2385	sporulation resulting in formation of a cellular spore
SynRCC307_0062	COG1215	transferase activity, transferring glycosyl groups
SynRCC307_0063	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
SynRCC307_0065	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
SynRCC307_0066	COG0740	serine-type endopeptidase activity
SynRCC307_0067	COG0544	peptidyl-prolyl cis-trans isomerase activity
SynRCC307_0068	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
SynRCC307_0069	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
SynRCC307_0070	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
SynRCC307_0072	COG0037	tRNA processing
SynRCC307_0074	COG0556	nucleotide-excision repair
SynRCC307_0075	COG0527	aspartate kinase activity
SynRCC307_0077	COG2082	Precorrin-8x methylmutase
SynRCC307_0078	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
SynRCC307_0080	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
SynRCC307_0084	COG1088	dTDP-glucose 4,6-dehydratase activity
SynRCC307_0085	COG0454	-acetyltransferase
SynRCC307_0086	COG0653	protein targeting
SynRCC307_0087	COG1045	serine acetyltransferase
SynRCC307_0088	COG1725	Transcriptional regulator
SynRCC307_0089	COG0412	Dienelactone hydrolase
SynRCC307_0090	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
SynRCC307_0091	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
SynRCC307_0092	COG1372	Participates in initiation and elongation during chromosome replication
SynRCC307_0092	COG0187	DNA topoisomerase II activity
SynRCC307_0094	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
SynRCC307_0095	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
SynRCC307_0096	COG0386	Belongs to the glutathione peroxidase family
SynRCC307_0097	COG2239	Acts as a magnesium transporter
SynRCC307_0098	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_0101	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_0105	COG0802	atpase or kinase
SynRCC307_0106	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
SynRCC307_0107	COG0586	Pfam SNARE associated Golgi protein
SynRCC307_0108	COG0629	single-stranded DNA binding
SynRCC307_0114	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
SynRCC307_0119	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
SynRCC307_0120	COG1262	PFAM Formylglycine-generating sulfatase enzyme
SynRCC307_0122	COG1357	PFAM Pentapeptide repeats (8 copies)
SynRCC307_0122	COG0515	serine threonine protein kinase
SynRCC307_0123	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
SynRCC307_0124	COG2255	four-way junction helicase activity
SynRCC307_0126	COG1473	amidohydrolase
SynRCC307_0129	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
SynRCC307_0130	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
SynRCC307_0131	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
SynRCC307_0132	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
SynRCC307_0133	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0134	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
SynRCC307_0135	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
SynRCC307_0137	COG0571	ribonuclease III activity
SynRCC307_0140	COG0058	SHG alpha-glucan phosphorylase activity
SynRCC307_0145	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
SynRCC307_0145	COG2755	lipolytic protein G-D-S-L family
SynRCC307_0146	COG0277	FAD linked oxidase domain protein
SynRCC307_0148	COG0247	lactate metabolic process
SynRCC307_0149	COG2192	nodulation
SynRCC307_0153	COG0538	isocitrate dehydrogenase activity
SynRCC307_0155	COG5398	heme oxygenase
SynRCC307_0157	COG1132	(ABC) transporter
SynRCC307_0158	COG0124	histidyl-tRNA synthetase
SynRCC307_0159	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
SynRCC307_0164	COG0617	tRNA 3'-terminal CCA addition
SynRCC307_0165	COG1216	Glycosyl transferase, family 2
SynRCC307_0165	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_0173	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
SynRCC307_0174	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_0175	COG0367	asparagine synthase
SynRCC307_0178	COG0463	Glycosyl transferase, family 2
SynRCC307_0180	COG1132	(ABC) transporter
SynRCC307_0182	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
SynRCC307_0182	COG0463	Glycosyl transferase, family 2
SynRCC307_0186	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
SynRCC307_0186	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
SynRCC307_0187	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
SynRCC307_0188	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
SynRCC307_0189	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
SynRCC307_0190	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
SynRCC307_0192	COG1132	(ABC) transporter
SynRCC307_0194	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
SynRCC307_0204	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
SynRCC307_0211	COG4447	cellulose binding
SynRCC307_0213	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0214	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0215	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0216	COG0391	Required for morphogenesis under gluconeogenic growth conditions
SynRCC307_0217	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
SynRCC307_0218	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
SynRCC307_0219	COG3842	ATPase activity
SynRCC307_0221	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
SynRCC307_0221	COG1240	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
SynRCC307_0224	COG0494	nUDIX hydrolase
SynRCC307_0225	COG0415	Belongs to the DNA photolyase family
SynRCC307_0226	COG2197	response regulator
SynRCC307_0228	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
SynRCC307_0231	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0232	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SynRCC307_0233	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SynRCC307_0235	COG0583	DNA-binding transcription factor activity
SynRCC307_0238	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
SynRCC307_0238	COG0493	'glutamate synthase
SynRCC307_0239	COG1562	ergosterol biosynthetic process
SynRCC307_0242	COG0617	tRNA 3'-terminal CCA addition
SynRCC307_0244	COG1214	PFAM Peptidase M22, glycoprotease
SynRCC307_0247	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
SynRCC307_0248	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
SynRCC307_0249	COG0416	fatty acid biosynthetic process
SynRCC307_0250	COG0745	RESPONSE REGULATOR receiver
SynRCC307_0251	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
SynRCC307_0252	COG0457	Tetratricopeptide repeat
SynRCC307_0253	COG2217	Heavy metal translocating P-type atpase
SynRCC307_0254	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
SynRCC307_0255	COG0470	DNA polymerase III
SynRCC307_0256	COG0745	RESPONSE REGULATOR receiver
SynRCC307_0257	COG1122	ATPase activity
SynRCC307_0264	COG3659	wide pore channel activity
SynRCC307_0264	COG3659	wide pore channel activity
SynRCC307_0265	COG3659	wide pore channel activity
SynRCC307_0265	COG3659	wide pore channel activity
SynRCC307_0266	COG0859	PFAM glycosyl transferase family 9
SynRCC307_0266	COG0457	Tetratricopeptide repeat
SynRCC307_0267	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
SynRCC307_0268	COG0484	heat shock protein binding
SynRCC307_0270	COG1090	epimerase
SynRCC307_0274	COG0316	Belongs to the HesB IscA family
SynRCC307_0275	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
SynRCC307_0278	COG1587	Uroporphyrinogen-III synthase
SynRCC307_0279	COG0457	Tetratricopeptide repeat
SynRCC307_0279	COG0463	Glycosyl transferase, family 2
SynRCC307_0280	COG1472	Belongs to the glycosyl hydrolase 3 family
SynRCC307_0281	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
SynRCC307_0284	COG0517	IMP dehydrogenase activity
SynRCC307_0284	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
SynRCC307_0285	COG2877	3-deoxy-8-phosphooctulonate synthase activity
SynRCC307_0286	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
SynRCC307_0287	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
SynRCC307_0291	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
SynRCC307_0297	COG1032	radical SAM domain protein
SynRCC307_0300	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SynRCC307_0301	COG0434	BtpA family
SynRCC307_0302	COG4243	Vitamin k epoxide reductase
SynRCC307_0303	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
SynRCC307_0304	COG1555	photosystem II stabilization
SynRCC307_0306	COG1968	undecaprenyl-diphosphatase activity
SynRCC307_0309	COG2211	Major facilitator Superfamily
SynRCC307_0310	COG0483	inositol monophosphate 1-phosphatase activity
SynRCC307_0311	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
SynRCC307_0313	COG1193	negative regulation of DNA recombination
SynRCC307_0315	COG0113	porphobilinogen synthase activity
SynRCC307_0316	COG0484	heat shock protein binding
SynRCC307_0334	COG0116	Belongs to the methyltransferase superfamily
SynRCC307_0337	COG1196	nuclear chromosome segregation
SynRCC307_0339	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
SynRCC307_0341	COG0439	Biotin carboxylase
SynRCC307_0344	COG0515	serine threonine protein kinase
SynRCC307_0347	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SynRCC307_0348	COG4178	(ABC) transporter
SynRCC307_0349	COG0537	adenosine 5'-monophosphoramidase activity
SynRCC307_0352	COG0828	Belongs to the bacterial ribosomal protein bS21 family
SynRCC307_0355	COG0242	peptide deformylase activity
SynRCC307_0357	COG2988	succinylglutamate desuccinylase activity
SynRCC307_0358	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
SynRCC307_0360	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
SynRCC307_0368	COG1570	exodeoxyribonuclease VII activity
SynRCC307_0370	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SynRCC307_0375	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SynRCC307_0379	COG0488	(ABC) transporter
SynRCC307_0385	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
SynRCC307_0386	COG0450	alkyl hydroperoxide reductase
SynRCC307_0387	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_0388	COG0546	phosphoglycolate phosphatase activity
SynRCC307_0389	COG1252	NADH dehydrogenase
SynRCC307_0390	COG0175	sulfate reduction
SynRCC307_0391	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
SynRCC307_0392	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
SynRCC307_0396	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
SynRCC307_0401	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SynRCC307_0402	COG0033	Phosphoglucomutase
SynRCC307_0405	COG3394	polysaccharide catabolic process
SynRCC307_0406	COG0463	Glycosyl transferase, family 2
SynRCC307_0408	COG0659	secondary active sulfate transmembrane transporter activity
SynRCC307_0409	COG0418	dihydroorotase activity
SynRCC307_0412	COG1070	Carbohydrate kinase
SynRCC307_0413	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
SynRCC307_0415	COG0539	negative regulation of cytoplasmic translation
SynRCC307_0416	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
SynRCC307_0421	COG0589	response to stress
SynRCC307_0422	COG0824	Thioesterase
SynRCC307_0423	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
SynRCC307_0423	COG0758	DNA mediated transformation
SynRCC307_0424	COG2890	protein-(glutamine-N5) methyltransferase activity
SynRCC307_0425	COG0009	L-threonylcarbamoyladenylate synthase
SynRCC307_0426	COG0798	PFAM Bile acid sodium symporter
SynRCC307_0429	COG0640	Transcriptional regulator
SynRCC307_0431	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_0433	COG1799	cell septum assembly
SynRCC307_0436	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
SynRCC307_0437	COG2894	cell division
SynRCC307_0438	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
SynRCC307_0441	COG0850	regulation of cytokinetic process
SynRCC307_0442	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
SynRCC307_0443	COG1078	dGTPase activity
SynRCC307_0444	COG0793	Belongs to the peptidase S41A family
SynRCC307_0445	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SynRCC307_0446	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SynRCC307_0448	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
SynRCC307_0450	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
SynRCC307_0453	COG0514	ATP-dependent DNA helicase (RecQ)
SynRCC307_0455	COG1012	belongs to the aldehyde dehydrogenase family
SynRCC307_0456	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
SynRCC307_0459	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
SynRCC307_0462	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
SynRCC307_0466	COG1160	GTP binding
SynRCC307_0467	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
SynRCC307_0469	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
SynRCC307_0470	COG1799	cell septum assembly
SynRCC307_0471	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
SynRCC307_0472	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
SynRCC307_0477	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
SynRCC307_0478	COG2211	Major facilitator Superfamily
SynRCC307_0481	COG0776	regulation of translation
SynRCC307_0489	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
SynRCC307_0520	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SynRCC307_0541	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
SynRCC307_0542	COG1218	3'(2'),5'-bisphosphate nucleotidase
SynRCC307_0543	COG1185	polyribonucleotide nucleotidyltransferase activity
SynRCC307_0544	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
SynRCC307_0545	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
SynRCC307_0546	COG0750	zinc metalloprotease
SynRCC307_0547	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
SynRCC307_0548	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
SynRCC307_0549	COG0579	oxidoreductase
SynRCC307_0551	COG0371	Dehydrogenase
SynRCC307_0552	COG0481	GTPase activity
SynRCC307_0563	COG0745	RESPONSE REGULATOR receiver
SynRCC307_0565	COG2205	protein histidine kinase activity
SynRCC307_0566	COG0745	RESPONSE REGULATOR receiver
SynRCC307_0572	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
SynRCC307_0574	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
SynRCC307_0574	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
SynRCC307_0576	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
SynRCC307_0577	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
SynRCC307_0579	COG0107	imidazoleglycerol-phosphate synthase activity
SynRCC307_0583	COG2132	Multicopper oxidase
SynRCC307_0585	COG0752	glycyl-tRNA synthetase alpha subunit
SynRCC307_0592	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
SynRCC307_0593	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
SynRCC307_0594	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
SynRCC307_0595	COG0740	serine-type endopeptidase activity
SynRCC307_0596	COG0740	serine-type endopeptidase activity
SynRCC307_0597	COG4956	integral membrane protein (PIN domain superfamily)
SynRCC307_0598	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SynRCC307_0599	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
SynRCC307_0600	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
SynRCC307_0603	COG1181	Belongs to the D-alanine--D-alanine ligase family
SynRCC307_0604	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SynRCC307_0605	COG4948	Mandelate Racemase Muconate Lactonizing
SynRCC307_0611	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
SynRCC307_0612	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
SynRCC307_0614	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
SynRCC307_0615	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
SynRCC307_0616	COG0134	indole-3-glycerol-phosphate synthase activity
SynRCC307_0621	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
SynRCC307_0622	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
SynRCC307_0624	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
SynRCC307_0625	COG1104	cysteine desulfurase activity
SynRCC307_0635	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SynRCC307_0637	COG0706	membrane insertase activity
SynRCC307_0639	COG0594	ribonuclease P activity
SynRCC307_0640	COG0230	Belongs to the bacterial ribosomal protein bL34 family
SynRCC307_0644	COG0616	signal peptide processing
SynRCC307_0645	COG0697	spore germination
SynRCC307_0646	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_0648	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
SynRCC307_0649	COG0662	Cupin 2, conserved barrel domain protein
SynRCC307_0649	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
SynRCC307_0650	COG3273	potassium ion transport
SynRCC307_0650	COG0471	metal ion transport
SynRCC307_0652	COG1842	Phage shock protein A
SynRCC307_0653	COG3118	belongs to the thioredoxin family
SynRCC307_0654	COG0436	Aminotransferase
SynRCC307_0657	COG0739	heme binding
SynRCC307_0658	COG0577	efflux transmembrane transporter activity
SynRCC307_0658	COG1136	(ABC) transporter
SynRCC307_0659	COG1007	ATP synthesis coupled electron transport
SynRCC307_0660	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
SynRCC307_0663	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
SynRCC307_0670	COG1845	cytochrome c oxidase, subunit III
SynRCC307_0671	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
SynRCC307_0674	COG0109	protoheme IX farnesyltransferase activity
SynRCC307_0678	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
SynRCC307_0681	COG1028	Short-chain dehydrogenase reductase Sdr
SynRCC307_0684	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
SynRCC307_0685	COG1619	proteins homologs of microcin C7 resistance protein MccF
SynRCC307_0686	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
SynRCC307_0702	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
SynRCC307_0703	COG3258	Cytochrome c
SynRCC307_0704	COG0723	plastoquinol--plastocyanin reductase activity
SynRCC307_0706	COG0805	protein transport
SynRCC307_0708	COG0194	GDP metabolic process
SynRCC307_0715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SynRCC307_0716	COG0012	GTP binding
SynRCC307_0723	COG0460	homoserine dehydrogenase
SynRCC307_0724	COG2166	iron-sulfur cluster assembly
SynRCC307_0727	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
SynRCC307_0728	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
SynRCC307_0729	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
SynRCC307_0733	COG2010	Cytochrome c
SynRCC307_0736	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
SynRCC307_0737	COG1611	Belongs to the LOG family
SynRCC307_0738	COG3118	belongs to the thioredoxin family
SynRCC307_0739	COG0516	GMP reductase activity
SynRCC307_0740	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SynRCC307_0742	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
SynRCC307_0743	COG0644	oxidoreductase
SynRCC307_0745	COG1543	Belongs to the glycosyl hydrolase 57 family
SynRCC307_0746	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SynRCC307_0747	COG0395	ABC-type sugar transport system, permease component
SynRCC307_0748	COG1480	7TM receptor with intracellular HD hydrolase
SynRCC307_0749	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
SynRCC307_0756	COG1254	Belongs to the acylphosphatase family
SynRCC307_0757	COG1797	cobyrinic acid a,c-diamide synthase activity
SynRCC307_0758	COG3409	Peptidoglycan-binding domain 1 protein
SynRCC307_0758	COG3429	Glucose-6-phosphate dehydrogenase subunit
SynRCC307_0759	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
SynRCC307_0760	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
SynRCC307_0762	COG2205	protein histidine kinase activity
SynRCC307_0767	COG0308	aminopeptidase N
SynRCC307_0771	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
SynRCC307_0774	COG1035	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
SynRCC307_0775	COG1640	4-alpha-glucanotransferase
SynRCC307_0777	COG1187	pseudouridine synthase activity
SynRCC307_0778	COG5002	protein histidine kinase activity
SynRCC307_0779	COG0745	RESPONSE REGULATOR receiver
SynRCC307_0781	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
SynRCC307_0782	COG1982	Orn Lys Arg decarboxylase major
SynRCC307_0783	COG2241	protein methyltransferase activity
SynRCC307_0783	COG2242	protein methyltransferase activity
SynRCC307_0784	COG0575	Belongs to the CDS family
SynRCC307_0787	COG0371	Dehydrogenase
SynRCC307_0788	COG0542	response to heat
SynRCC307_0790	COG0019	diaminopimelate decarboxylase activity
SynRCC307_0792	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
SynRCC307_0793	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
SynRCC307_0796	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
SynRCC307_0799	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
SynRCC307_0800	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
SynRCC307_0801	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
SynRCC307_0815	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
SynRCC307_0819	COG1850	ribulose-bisphosphate carboxylase activity
SynRCC307_0820	COG4451	ribulose bisphosphate carboxylase, small
SynRCC307_0827	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SynRCC307_0828	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0831	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
SynRCC307_0832	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SynRCC307_0835	COG0456	acetyltransferase
SynRCC307_0837	COG1132	(ABC) transporter
SynRCC307_0838	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
SynRCC307_0839	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
SynRCC307_0840	COG0251	oxidation-reduction process
SynRCC307_0843	COG0488	(ABC) transporter
SynRCC307_0850	COG2326	polyphosphate kinase activity
SynRCC307_0853	COG0028	Belongs to the TPP enzyme family
SynRCC307_0854	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SynRCC307_0856	COG2226	methyltransferase
SynRCC307_0859	COG0528	UMP kinase activity
SynRCC307_0860	COG0233	cytoplasmic translational termination
SynRCC307_0863	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
SynRCC307_0864	COG0768	penicillin binding
SynRCC307_0867	COG0588	phosphoglycerate mutase activity
SynRCC307_0868	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
SynRCC307_0873	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
SynRCC307_0876	COG0442	prolyl-tRNA aminoacylation
SynRCC307_0879	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
SynRCC307_0880	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
SynRCC307_0881	COG1324	tolerance protein
SynRCC307_0886	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
SynRCC307_0888	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
SynRCC307_0889	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_0896	COG0181	hydroxymethylbilane synthase activity
SynRCC307_0897	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
SynRCC307_0900	COG2154	pterin-4-alpha-carbinolamine dehydratase
SynRCC307_0906	COG0542	response to heat
SynRCC307_0909	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
SynRCC307_0917	COG2010	Cytochrome c
SynRCC307_0919	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
SynRCC307_0920	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
SynRCC307_0925	COG1940	carbohydrate kinase activity
SynRCC307_0926	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
SynRCC307_0927	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
SynRCC307_0939	COG1119	ATPase activity
SynRCC307_0940	COG0011	TIGRFAM Protein of
SynRCC307_0941	COG0339	signal peptide processing
SynRCC307_0942	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_0943	COG0083	homoserine kinase activity
SynRCC307_0944	COG0837	glucose binding
SynRCC307_0945	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
SynRCC307_0951	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
SynRCC307_0954	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SynRCC307_0956	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SynRCC307_0959	COG0745	RESPONSE REGULATOR receiver
SynRCC307_0966	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
SynRCC307_0969	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SynRCC307_0970	COG1429	ligase activity, forming nitrogen-metal bonds
SynRCC307_0971	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
SynRCC307_0973	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
SynRCC307_0974	COG0149	triose-phosphate isomerase activity
SynRCC307_0976	COG1132	(ABC) transporter
SynRCC307_0978	COG1115	amino acid carrier protein
SynRCC307_0980	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
SynRCC307_0986	COG1970	mechanosensitive ion channel activity
SynRCC307_0991	COG0673	inositol 2-dehydrogenase activity
SynRCC307_0993	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
SynRCC307_0994	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
SynRCC307_0996	COG3954	Phosphoribulokinase
SynRCC307_0997	COG0473	3-isopropylmalate dehydrogenase activity
SynRCC307_0998	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SynRCC307_0999	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
SynRCC307_1002	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
SynRCC307_1008	COG2197	response regulator
SynRCC307_1010	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
SynRCC307_1012	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
SynRCC307_1017	COG1201	RNA secondary structure unwinding
SynRCC307_1018	COG1793	dna ligase
SynRCC307_1023	COG0598	Magnesium transport protein CorA
SynRCC307_1045	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
SynRCC307_1050	COG0659	secondary active sulfate transmembrane transporter activity
SynRCC307_1051	COG0426	domain, Protein
SynRCC307_1051	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SynRCC307_1054	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
SynRCC307_1063	COG2076	Multidrug Resistance protein
SynRCC307_1079	COG0724	RNA recognition motif
SynRCC307_1106	COG2124	cytochrome p450
SynRCC307_1112	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
SynRCC307_1120	COG5002	protein histidine kinase activity
SynRCC307_1124	COG0367	asparagine synthase
SynRCC307_1125	COG0540	Belongs to the ATCase OTCase family
SynRCC307_1129	COG1773	rubredoxin
SynRCC307_1139	COG0681	Belongs to the peptidase S26 family
SynRCC307_1140	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
SynRCC307_1141	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
SynRCC307_1143	COG1376	ErfK ybiS ycfS ynhG family protein
SynRCC307_1144	COG0297	glycogen (starch) synthase activity
SynRCC307_1146	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
SynRCC307_1147	COG0668	transmembrane transport
SynRCC307_1148	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
SynRCC307_1150	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
SynRCC307_1154	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
SynRCC307_1155	COG2045	Belongs to the ComB family
SynRCC307_1156	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SynRCC307_1158	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
SynRCC307_1159	COG0142	geranyltranstransferase activity
SynRCC307_1174	COG4106	trans-aconitate 2-methyltransferase activity
SynRCC307_1175	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
SynRCC307_1179	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
SynRCC307_1185	COG0415	Belongs to the DNA photolyase family
SynRCC307_1188	COG0495	leucyl-tRNA aminoacylation
SynRCC307_1190	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
SynRCC307_1191	COG1104	cysteine desulfurase activity
SynRCC307_1196	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
SynRCC307_1197	COG0322	excinuclease ABC activity
SynRCC307_1201	COG2197	response regulator
SynRCC307_1202	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
SynRCC307_1203	COG3046	protein related to deoxyribodipyrimidine photolyase
SynRCC307_1205	COG0587	DNA-directed DNA polymerase activity
SynRCC307_1208	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
SynRCC307_1209	COG0646	methionine synthase
SynRCC307_1209	COG1410	methionine synthase
SynRCC307_1214	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
SynRCC307_1215	COG0384	phenazine biosynthesis protein PhzF
SynRCC307_1216	COG2385	sporulation resulting in formation of a cellular spore
SynRCC307_1222	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
SynRCC307_1223	COG0072	phenylalanine-tRNA ligase activity
SynRCC307_1223	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SynRCC307_1224	COG0267	Belongs to the bacterial ribosomal protein bL33 family
SynRCC307_1225	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
SynRCC307_1226	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
SynRCC307_1228	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SynRCC307_1235	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
SynRCC307_1236	COG0739	heme binding
SynRCC307_1238	COG0450	alkyl hydroperoxide reductase
SynRCC307_1239	COG1619	proteins homologs of microcin C7 resistance protein MccF
SynRCC307_1240	COG0047	phosphoribosylformylglycinamidine synthase activity
SynRCC307_1246	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
SynRCC307_1248	COG0129	dihydroxy-acid dehydratase activity
SynRCC307_1251	COG0363	glucosamine-6-phosphate deaminase activity
SynRCC307_1252	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
SynRCC307_1253	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
SynRCC307_1254	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
SynRCC307_1255	COG1494	fructose-1,6-bisphosphatase
SynRCC307_1256	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
SynRCC307_1257	COG0459	protein refolding
SynRCC307_1260	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SynRCC307_1262	COG1137	ATPase activity
SynRCC307_1267	COG0644	oxidoreductase
SynRCC307_1268	COG0751	glycine-tRNA ligase activity
SynRCC307_1269	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
SynRCC307_1270	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
SynRCC307_1271	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
SynRCC307_1273	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
SynRCC307_1274	COG0052	Belongs to the universal ribosomal protein uS2 family
SynRCC307_1275	COG1216	Glycosyl transferase, family 2
SynRCC307_1279	COG0811	peptide transport
SynRCC307_1281	COG1136	(ABC) transporter
SynRCC307_1285	COG0612	Peptidase, M16
SynRCC307_1289	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
SynRCC307_1290	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
SynRCC307_1292	COG0076	glutamate decarboxylase activity
SynRCC307_1293	COG0590	tRNA wobble adenosine to inosine editing
SynRCC307_1294	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
SynRCC307_1296	COG0174	glutamine synthetase
SynRCC307_1301	COG2205	protein histidine kinase activity
SynRCC307_1302	COG0515	serine threonine protein kinase
SynRCC307_1303	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
SynRCC307_1304	COG3310	Protein conserved in bacteria
SynRCC307_1305	COG0628	permease
SynRCC307_1310	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SynRCC307_1311	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SynRCC307_1312	COG0022	dehydrogenase e1 component
SynRCC307_1312	COG0508	dehydrogenase complex catalyzes the overall conversion of
SynRCC307_1314	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
SynRCC307_1315	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
SynRCC307_1316	COG0792	nuclease activity
SynRCC307_1319	COG0358	DNA primase activity
SynRCC307_1322	COG0632	four-way junction helicase activity
SynRCC307_1323	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
SynRCC307_1325	COG0587	DNA-directed DNA polymerase activity
SynRCC307_1326	COG0154	amidase activity
SynRCC307_1328	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
SynRCC307_1329	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
SynRCC307_1331	COG0505	Belongs to the CarA family
SynRCC307_1332	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
SynRCC307_1334	COG1132	(ABC) transporter
SynRCC307_1336	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
SynRCC307_1339	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
SynRCC307_1341	COG2176	DNA-directed DNA polymerase activity
SynRCC307_1342	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
SynRCC307_1344	COG0530	calcium, potassium:sodium antiporter activity
SynRCC307_1345	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
SynRCC307_1346	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
SynRCC307_1347	COG0166	Belongs to the GPI family
SynRCC307_1352	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
SynRCC307_1353	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
SynRCC307_1354	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
SynRCC307_1354	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
SynRCC307_1355	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SynRCC307_1356	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
SynRCC307_1357	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
SynRCC307_1359	COG0484	heat shock protein binding
SynRCC307_1360	COG0443	Heat shock 70 kDa protein
SynRCC307_1361	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
SynRCC307_1362	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
SynRCC307_1363	COG0573	inorganic phosphate transmembrane transporter activity
SynRCC307_1364	COG0581	inorganic phosphate transmembrane transporter activity
SynRCC307_1365	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
SynRCC307_1366	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
SynRCC307_1367	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
SynRCC307_1368	COG0483	inositol monophosphate 1-phosphatase activity
SynRCC307_1369	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
SynRCC307_1371	COG0326	Molecular chaperone. Has ATPase activity
SynRCC307_1373	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
SynRCC307_1374	COG1653	transport
SynRCC307_1377	COG3842	ATPase activity
SynRCC307_1380	COG0366	Alpha amylase catalytic
SynRCC307_1381	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
SynRCC307_1382	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
SynRCC307_1383	COG0227	Belongs to the bacterial ribosomal protein bL28 family
SynRCC307_1384	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
SynRCC307_1390	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
SynRCC307_1391	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
SynRCC307_1399	COG0469	pyruvate kinase activity
SynRCC307_1400	COG0577	efflux transmembrane transporter activity
SynRCC307_1400	COG1136	(ABC) transporter
SynRCC307_1402	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SynRCC307_1404	COG0740	serine-type endopeptidase activity
SynRCC307_1408	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
SynRCC307_1417	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
SynRCC307_1419	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
SynRCC307_1420	COG2226	methyltransferase
SynRCC307_1422	COG1942	4-Oxalocrotonate Tautomerase
SynRCC307_1433	COG2197	response regulator
SynRCC307_1434	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
SynRCC307_1438	COG0475	glutathione-regulated potassium exporter activity
SynRCC307_1445	COG0180	Tryptophanyl-tRNA synthetase
SynRCC307_1447	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
SynRCC307_1448	COG1122	ATPase activity
SynRCC307_1453	COG1836	PFAM Integral membrane protein DUF92
SynRCC307_1454	COG1191	sigma factor activity
SynRCC307_1455	COG3639	organic phosphonate transmembrane transporter activity
SynRCC307_1456	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
SynRCC307_1457	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
SynRCC307_1458	COG0436	Aminotransferase
SynRCC307_1460	COG1573	uracil-dna glycosylase
SynRCC307_1462	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
SynRCC307_1463	COG0793	Belongs to the peptidase S41A family
SynRCC307_1465	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
SynRCC307_1471	COG0861	Integral membrane protein TerC family
SynRCC307_1473	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
SynRCC307_1475	COG0312	modulator of DNA gyrase
SynRCC307_1476	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
SynRCC307_1479	COG0163	prenyltransferase activity
SynRCC307_1480	COG0557	exoribonuclease II activity
SynRCC307_1482	COG2119	membrane
SynRCC307_1485	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
SynRCC307_1485	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
SynRCC307_1486	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
SynRCC307_1488	COG0333	Belongs to the bacterial ribosomal protein bL32 family
SynRCC307_1489	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SynRCC307_1490	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
SynRCC307_1491	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
SynRCC307_1493	COG0191	fructose-bisphosphate aldolase activity
SynRCC307_1497	COG0435	Glutathione S-transferase
SynRCC307_1498	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SynRCC307_1502	COG0432	Pfam Uncharacterised protein family UPF0047
SynRCC307_1505	COG3179	chitinase
SynRCC307_1509	COG0477	Major facilitator Superfamily
SynRCC307_1511	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SynRCC307_1541	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
SynRCC307_1542	COG1233	COG1233 Phytoene dehydrogenase and related
SynRCC307_1543	COG2095	MarC family integral membrane protein
SynRCC307_1544	COG0076	glutamate decarboxylase activity
SynRCC307_1549	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
SynRCC307_1550	COG0271	Belongs to the BolA IbaG family
SynRCC307_1553	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
SynRCC307_1555	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
SynRCC307_1556	COG1074	ATP-dependent DNA helicase activity
SynRCC307_1557	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
SynRCC307_1560	COG0513	Belongs to the DEAD box helicase family
SynRCC307_1563	COG1316	TRANSCRIPTIONal
SynRCC307_1564	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SynRCC307_1565	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SynRCC307_1566	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
SynRCC307_1569	COG1741	Belongs to the pirin family
SynRCC307_1570	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
SynRCC307_1571	COG0569	domain protein
SynRCC307_1575	COG0704	Plays a role in the regulation of phosphate uptake
SynRCC307_1578	COG0095	Lipoate-protein ligase
SynRCC307_1579	COG1994	Peptidase M50
SynRCC307_1579	COG0517	IMP dehydrogenase activity
SynRCC307_1580	COG0135	phosphoribosylanthranilate isomerase activity
SynRCC307_1582	COG0302	gtp cyclohydrolase
SynRCC307_1583	COG0300	oxidoreductase activity
SynRCC307_1585	COG5322	oxidoreductase activity
SynRCC307_1586	COG3396	Phenylacetate-CoA oxygenase
SynRCC307_1588	COG0539	negative regulation of cytoplasmic translation
SynRCC307_1598	COG2010	Cytochrome c
SynRCC307_1600	COG0159	tryptophan synthase activity
SynRCC307_1609	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_1612	COG1108	ABC-type Mn2 Zn2 transport systems permease components
SynRCC307_1613	COG1121	(ABC) transporter
SynRCC307_1614	COG0803	Belongs to the bacterial solute-binding protein 9 family
SynRCC307_1615	COG0701	Predicted permease
SynRCC307_1619	COG0140	phosphoribosyl-ATP diphosphatase activity
SynRCC307_1619	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
SynRCC307_1620	COG0720	synthase
SynRCC307_1621	COG0735	belongs to the Fur family
SynRCC307_1627	COG0789	Transcriptional regulator
SynRCC307_1628	COG0523	cobalamin synthesis protein
SynRCC307_1633	COG1840	ABC-type Fe3 transport system, periplasmic component
SynRCC307_1634	COG1840	ABC-type Fe3 transport system, periplasmic component
SynRCC307_1636	COG3842	ATPase activity
SynRCC307_1637	COG0735	belongs to the Fur family
SynRCC307_1641	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
SynRCC307_1647	COG0277	FAD linked oxidase domain protein
SynRCC307_1648	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
SynRCC307_1649	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
SynRCC307_1652	COG0405	Gamma-glutamyltransferase
SynRCC307_1657	COG1666	GTP binding
SynRCC307_1660	COG0857	belongs to the CobB CobQ family
SynRCC307_1661	COG0300	oxidoreductase activity
SynRCC307_1661	COG3000	fatty acid hydroxylase
SynRCC307_1662	COG0024	Methionine aminopeptidase
SynRCC307_1664	COG0335	large ribosomal subunit rRNA binding
SynRCC307_1666	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SynRCC307_1667	COG0025	NhaP-type Na H and K H
SynRCC307_1669	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SynRCC307_1669	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SynRCC307_1670	COG0215	cysteine-tRNA ligase activity
SynRCC307_1673	COG0733	neurotransmitter:sodium symporter activity
SynRCC307_1674	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
SynRCC307_1683	COG0492	ferredoxin-NADP+ reductase activity
SynRCC307_1684	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
SynRCC307_1686	COG1187	pseudouridine synthase activity
SynRCC307_1691	COG0596	Alpha beta hydrolase
SynRCC307_1692	COG0440	acetolactate synthase activity
SynRCC307_1693	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SynRCC307_1697	COG0424	maF-like protein
SynRCC307_1699	COG1492	cobalamin metabolic process
SynRCC307_1702	COG0482	sulfurtransferase activity
SynRCC307_1703	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
SynRCC307_1703	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
SynRCC307_1704	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_1705	COG0123	including yeast histone deacetylase and acetoin utilization protein
SynRCC307_1706	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
SynRCC307_1708	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
SynRCC307_1709	COG0228	four-way junction DNA binding
SynRCC307_1710	COG1702	phosphate starvation-inducible protein PhoH
SynRCC307_1717	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
SynRCC307_1720	COG0457	Tetratricopeptide repeat
SynRCC307_1727	COG0336	Belongs to the RNA methyltransferase TrmD family
SynRCC307_1728	COG0330	HflC and HflK could
SynRCC307_1730	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
SynRCC307_1733	COG1691	(AIR) carboxylase
SynRCC307_1737	COG0352	thiamine-phosphate diphosphorylase activity
SynRCC307_1738	COG0196	riboflavin kinase activity
SynRCC307_1740	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
SynRCC307_1741	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
SynRCC307_1742	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
SynRCC307_1743	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
SynRCC307_1744	COG0745	RESPONSE REGULATOR receiver
SynRCC307_1751	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SynRCC307_1751	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SynRCC307_1754	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SynRCC307_1755	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
SynRCC307_1756	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
SynRCC307_1757	COG3239	Fatty acid desaturase
SynRCC307_1759	COG1028	Short-chain dehydrogenase reductase Sdr
SynRCC307_1781	COG2105	PFAM AIG2 family protein
SynRCC307_1787	COG0815	Transfers the fatty acyl group on membrane lipoproteins
SynRCC307_1788	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SynRCC307_1791	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
SynRCC307_1792	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
SynRCC307_1793	COG0531	amino acid
SynRCC307_1796	COG1022	Amp-dependent synthetase and ligase
SynRCC307_1797	COG0321	lipoyl(octanoyl) transferase activity
SynRCC307_1798	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
SynRCC307_1799	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
SynRCC307_1802	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_1803	COG0284	orotidine-5'-phosphate decarboxylase activity
SynRCC307_1805	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
SynRCC307_1809	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
SynRCC307_1811	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_1814	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
SynRCC307_1815	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SynRCC307_1817	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
SynRCC307_1820	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
SynRCC307_1822	COG0151	Belongs to the GarS family
SynRCC307_1823	COG5002	protein histidine kinase activity
SynRCC307_1824	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
SynRCC307_1825	COG4251	negative regulation of phosphorylation
SynRCC307_1827	COG0261	This protein binds to 23S rRNA in the presence of protein L20
SynRCC307_1828	COG0211	Belongs to the bacterial ribosomal protein bL27 family
SynRCC307_1831	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
SynRCC307_1833	COG0217	transcriptional regulatory protein
SynRCC307_1835	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
SynRCC307_1837	COG0363	glucosamine-6-phosphate deaminase activity
SynRCC307_1838	COG2385	sporulation resulting in formation of a cellular spore
SynRCC307_1839	COG1234	tRNA 3'-trailer cleavage
SynRCC307_1840	COG2010	Cytochrome c
SynRCC307_1843	COG2264	protein methyltransferase activity
SynRCC307_1844	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
SynRCC307_1847	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
SynRCC307_1853	COG1077	Cell shape determining protein MreB Mrl
SynRCC307_1856	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
SynRCC307_1859	COG0459	protein refolding
SynRCC307_1860	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
SynRCC307_1861	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
SynRCC307_1862	COG0355	proton-transporting ATP synthase activity, rotational mechanism
SynRCC307_1865	COG0387	Pfam Sodium calcium exchanger
SynRCC307_1866	COG0006	proline dipeptidase activity
SynRCC307_1867	COG1253	flavin adenine dinucleotide binding
SynRCC307_1868	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
SynRCC307_1869	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
SynRCC307_1870	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SynRCC307_1870	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
SynRCC307_1871	COG0686	Belongs to the AlaDH PNT family
SynRCC307_1873	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SynRCC307_1875	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
SynRCC307_1877	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
SynRCC307_1878	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
SynRCC307_1879	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
SynRCC307_1880	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
SynRCC307_1882	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
SynRCC307_1883	COG0356	it plays a direct role in the translocation of protons across the membrane
SynRCC307_1885	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
SynRCC307_1886	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
SynRCC307_1890	COG0772	Belongs to the SEDS family
SynRCC307_1893	COG1333	cytochrome c biogenesis protein
SynRCC307_1894	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
SynRCC307_1895	COG0347	Belongs to the P(II) protein family
SynRCC307_1899	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
SynRCC307_1923	COG4581	dead DEAH box helicase
SynRCC307_1924	COG0156	8-amino-7-oxononanoate synthase activity
SynRCC307_1926	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
SynRCC307_1926	COG4106	trans-aconitate 2-methyltransferase activity
SynRCC307_1927	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
SynRCC307_1935	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
SynRCC307_1936	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
SynRCC307_1940	COG0114	fumarate hydratase activity
SynRCC307_1941	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
SynRCC307_1945	COG0484	heat shock protein binding
SynRCC307_1946	COG0357	Ribosomal RNA small subunit methyltransferase G
SynRCC307_1953	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
SynRCC307_1954	COG0820	rRNA (adenine-C2-)-methyltransferase activity
SynRCC307_1956	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
SynRCC307_1957	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
SynRCC307_1958	COG0085	RNA polymerase activity
SynRCC307_1959	COG0085	RNA polymerase activity
SynRCC307_1960	COG0084	hydrolase, TatD family'
SynRCC307_1961	COG0268	Binds directly to 16S ribosomal RNA
SynRCC307_1962	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
SynRCC307_1964	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
SynRCC307_1965	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SynRCC307_1967	COG0779	Required for maturation of 30S ribosomal subunits
SynRCC307_1968	COG0195	Participates in both transcription termination and antitermination
SynRCC307_1970	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
SynRCC307_1988	COG1012	belongs to the aldehyde dehydrogenase family
SynRCC307_1992	COG3631	Ketosteroid isomerase-related protein
SynRCC307_2001	COG0463	Glycosyl transferase, family 2
SynRCC307_2002	COG0366	Alpha amylase catalytic
SynRCC307_2003	COG3769	mannosylglycerate metabolic process
SynRCC307_2010	COG0235	Class ii aldolase
SynRCC307_2012	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
SynRCC307_2015	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
SynRCC307_2016	COG0719	Fe-S assembly protein
SynRCC307_2017	COG0396	ATPase activity
SynRCC307_2018	COG0719	Fe-S assembly protein
SynRCC307_2019	COG4802	Ferredoxin thioredoxin reductase catalytic beta chain
SynRCC307_2020	COG1830	Aldolase
SynRCC307_2025	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
SynRCC307_2029	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
SynRCC307_2030	COG3264	Mechanosensitive ion channel
SynRCC307_2030	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
SynRCC307_2036	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
SynRCC307_2068	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
SynRCC307_2069	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
SynRCC307_2069	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
SynRCC307_2070	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
SynRCC307_2071	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
SynRCC307_2079	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
SynRCC307_2083	COG0408	coproporphyrinogen oxidase activity
SynRCC307_2084	COG0489	protein tyrosine kinase activity
SynRCC307_2085	COG0772	Belongs to the SEDS family
SynRCC307_2088	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
SynRCC307_2089	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
SynRCC307_2090	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
SynRCC307_2092	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
SynRCC307_2094	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
SynRCC307_2095	COG1606	tRNA processing
SynRCC307_2098	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
SynRCC307_2107	COG0287	Prephenate dehydrogenase
SynRCC307_2111	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
SynRCC307_2113	COG3854	ATPases associated with a variety of cellular activities
SynRCC307_2116	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
SynRCC307_2117	COG0088	Forms part of the polypeptide exit tunnel
SynRCC307_2118	COG0089	rRNA binding
SynRCC307_2119	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
SynRCC307_2120	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
SynRCC307_2121	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
SynRCC307_2122	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
SynRCC307_2123	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
SynRCC307_2124	COG0255	Belongs to the universal ribosomal protein uL29 family
SynRCC307_2125	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
SynRCC307_2126	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
SynRCC307_2127	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
SynRCC307_2128	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
SynRCC307_2129	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
SynRCC307_2130	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
SynRCC307_2131	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
SynRCC307_2132	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
SynRCC307_2133	COG0200	Binds to the 23S rRNA
SynRCC307_2134	COG0201	protein transport
SynRCC307_2135	COG0563	adenylate kinase activity
SynRCC307_2136	COG0257	Belongs to the bacterial ribosomal protein bL36 family
SynRCC307_2137	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
SynRCC307_2138	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
SynRCC307_2139	COG0202	RNA polymerase activity
SynRCC307_2140	COG0203	ribosomal protein L17
SynRCC307_2141	COG0101	tRNA pseudouridine synthase activity
SynRCC307_2142	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
SynRCC307_2143	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
SynRCC307_2144	COG0254	rRNA binding
SynRCC307_2145	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
SynRCC307_2147	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
SynRCC307_2150	COG0791	NLP P60 protein
SynRCC307_2151	COG0463	Glycosyl transferase, family 2
SynRCC307_2157	COG2885	chlorophyll binding
SynRCC307_2158	COG2885	chlorophyll binding
SynRCC307_2162	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
SynRCC307_2163	COG0659	secondary active sulfate transmembrane transporter activity
SynRCC307_2164	COG0067	glutamate synthase
SynRCC307_2164	COG0069	glutamate synthase activity
SynRCC307_2164	COG0070	glutamate synthase
SynRCC307_2167	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
SynRCC307_2168	COG0049	tRNA binding
SynRCC307_2169	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
SynRCC307_2170	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
SynRCC307_2171	COG0051	transcription antitermination factor activity, RNA binding
SynRCC307_2173	COG2226	methyltransferase
SynRCC307_2174	COG0077	Prephenate dehydratase
SynRCC307_2176	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
SynRCC307_2177	COG1530	ribonuclease E activity
SynRCC307_2178	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SynRCC307_2179	COG0436	Aminotransferase
SynRCC307_2180	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
SynRCC307_2184	COG0701	Predicted permease
SynRCC307_2187	COG1121	(ABC) transporter
SynRCC307_2188	COG1108	ABC-type Mn2 Zn2 transport systems permease components
SynRCC307_2189	COG3386	PFAM SMP-30 Gluconolaconase
SynRCC307_2190	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
SynRCC307_2193	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SynRCC307_2194	COG0529	Catalyzes the synthesis of activated sulfate
SynRCC307_2194	COG2046	Belongs to the sulfate adenylyltransferase family
SynRCC307_2197	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
SynRCC307_2198	COG3536	Protein conserved in bacteria
SynRCC307_2204	COG0540	Belongs to the ATCase OTCase family
SynRCC307_2205	COG2094	Belongs to the DNA glycosylase MPG family
SynRCC307_2207	COG1402	creatininase
SynRCC307_2208	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
SynRCC307_2212	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
SynRCC307_2216	COG0220	tRNA (guanine-N7-)-methyltransferase activity
SynRCC307_2219	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
SynRCC307_2221	COG0741	lytic transglycosylase activity
SynRCC307_2224	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
SynRCC307_2225	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
SynRCC307_2229	COG0126	phosphoglycerate kinase activity
SynRCC307_2230	COG0589	response to stress
SynRCC307_2231	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
SynRCC307_2232	COG0564	pseudouridine synthase activity
SynRCC307_2234	COG4172	Belongs to the ABC transporter superfamily
SynRCC307_2235	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
SynRCC307_2238	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
SynRCC307_2240	COG0157	Belongs to the NadC ModD family
SynRCC307_2241	COG0018	arginyl-trna synthetase
SynRCC307_2242	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SynRCC307_2245	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
SynRCC307_2246	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
SynRCC307_2248	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
SynRCC307_2249	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
SynRCC307_2250	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
SynRCC307_2251	COG0189	ligase activity
SynRCC307_2253	COG1575	Belongs to the MenA family. Type 1 subfamily
SynRCC307_2256	COG0824	Thioesterase
SynRCC307_2257	COG0649	NAD binding
SynRCC307_2258	COG0275	rRNA processing
SynRCC307_2259	COG1104	cysteine desulfurase activity
SynRCC307_2261	COG0745	RESPONSE REGULATOR receiver
SynRCC307_2262	COG0564	pseudouridine synthase activity
SynRCC307_2263	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
SynRCC307_2264	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
SynRCC307_2265	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
SynRCC307_2266	COG0628	permease
SynRCC307_2267	COG0529	Catalyzes the synthesis of activated sulfate
SynRCC307_2268	COG0023	Translation Initiation Factor
SynRCC307_2271	COG0133	tryptophan synthase activity
SynRCC307_2272	COG1420	regulation of RNA biosynthetic process
SynRCC307_2275	COG2062	phosphohistidine phosphatase, SixA
SynRCC307_2276	COG0372	Belongs to the citrate synthase family
SynRCC307_2277	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
SynRCC307_2278	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SynRCC307_2279	COG0839	Belongs to the complex I subunit 6 family
SynRCC307_2281	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
SynRCC307_2289	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
SynRCC307_2290	COG0131	Imidazoleglycerol-phosphate dehydratase
SynRCC307_2292	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
SynRCC307_2293	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
SynRCC307_2297	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
SynRCC307_2302	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
SynRCC307_2304	COG0625	glutathione transferase activity
SynRCC307_2306	COG1253	flavin adenine dinucleotide binding
SynRCC307_2307	COG0673	inositol 2-dehydrogenase activity
SynRCC307_2311	COG0343	queuine tRNA-ribosyltransferase activity
SynRCC307_2313	COG2205	protein histidine kinase activity
SynRCC307_2316	COG0138	bifunctional purine biosynthesis protein purh
SynRCC307_2319	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
SynRCC307_2320	COG0004	ammonium transporteR
SynRCC307_2323	COG1489	DNA binding
SynRCC307_2324	COG0728	peptidoglycan biosynthetic process
SynRCC307_2328	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
SynRCC307_2329	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SynRCC307_2330	COG1058	Belongs to the CinA family
SynRCC307_2330	COG1546	Belongs to the CinA family
SynRCC307_2331	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
SynRCC307_2332	COG0066	3-isopropylmalate dehydratase activity
SynRCC307_2339	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
SynRCC307_2343	COG4372	Transposase
SynRCC307_2344	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SynRCC307_2346	COG0717	Belongs to the dCTP deaminase family
SynRCC307_2348	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SynRCC307_2353	COG0167	dihydroorotate dehydrogenase activity
SynRCC307_2354	COG0328	RNA-DNA hybrid ribonuclease activity
SynRCC307_2355	COG0222	ribosome binding
SynRCC307_2356	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
SynRCC307_2357	COG0081	regulation of translation
SynRCC307_2358	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
SynRCC307_2359	COG0250	Participates in transcription elongation, termination and antitermination
SynRCC307_2360	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
SynRCC307_2361	COG0542	response to heat
SynRCC307_2362	COG0346	lactoylglutathione lyase activity
SynRCC307_2363	COG0148	phosphopyruvate hydratase activity
SynRCC307_2364	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
SynRCC307_2373	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
SynRCC307_2374	COG0237	dephospho-CoA kinase activity
SynRCC307_2375	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
SynRCC307_2377	COG0105	UTP biosynthetic process
SynRCC307_2378	COG1166	arginine decarboxylase activity
SynRCC307_2380	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
SynRCC307_2381	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
SynRCC307_2384	COG0071	Belongs to the small heat shock protein (HSP20) family
SynRCC307_2386	COG0426	domain, Protein
SynRCC307_2386	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SynRCC307_2387	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SynRCC307_2387	COG0426	domain, Protein
SynRCC307_2390	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
SynRCC307_2390	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
SynRCC307_2391	COG0509	glycine decarboxylation via glycine cleavage system
SynRCC307_2392	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
SynRCC307_2396	COG0359	binds to the 23S rRNA
SynRCC307_2397	COG1372	Participates in initiation and elongation during chromosome replication
SynRCC307_2397	COG0305	Participates in initiation and elongation during chromosome replication
SynRCC307_2397	COG0305	Participates in initiation and elongation during chromosome replication
SynRCC307_2397	COG1372	Participates in initiation and elongation during chromosome replication
SynRCC307_2399	COG0445	tRNA wobble uridine modification
SynRCC307_2409	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
SynRCC307_2411	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
SynRCC307_2412	COG0745	RESPONSE REGULATOR receiver
SynRCC307_2414	COG0398	Pfam SNARE associated Golgi protein
SynRCC307_2415	COG0668	transmembrane transport
SynRCC307_2416	COG0525	valine-tRNA ligase activity
SynRCC307_2428	COG0662	Cupin 2, conserved barrel domain protein
SynRCC307_2432	COG3956	TIGRFAM MazG family protein
SynRCC307_2433	COG0288	reversible hydration of carbon dioxide
SynRCC307_2434	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
SynRCC307_2435	COG0010	Belongs to the arginase family
SynRCC307_2437	COG0404	The glycine cleavage system catalyzes the degradation of glycine
SynRCC307_2438	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
SynRCC307_2439	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_2440	COG0783	Belongs to the Dps family
SynRCC307_2442	COG0504	CTP synthase activity
SynRCC307_2443	COG0602	queuosine metabolic process
SynRCC307_2444	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
SynRCC307_2450	COG0410	ABC transporter
SynRCC307_2455	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
SynRCC307_2457	COG0830	nickel cation binding
SynRCC307_2458	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
SynRCC307_2459	COG0829	nickel cation binding
SynRCC307_2461	COG0831	urea catabolic process
SynRCC307_2462	COG0832	Belongs to the urease beta subunit family
SynRCC307_2463	COG0804	urea catabolic process
SynRCC307_2465	COG2308	Evidence 4 Homologs of previously reported genes of
SynRCC307_2472	COG4638	Rieske (2fe-2S)
SynRCC307_2473	COG1116	anion transmembrane transporter activity
SynRCC307_2474	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
SynRCC307_2477	COG0375	protein maturation
SynRCC307_2478	COG0010	Belongs to the arginase family
SynRCC307_2479	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
SynRCC307_2482	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
SynRCC307_2483	COG2116	formate transmembrane transporter activity
SynRCC307_2485	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
SynRCC307_2486	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
SynRCC307_2489	COG0243	molybdopterin cofactor binding
SynRCC307_2490	COG2223	nitrite transmembrane transporter activity
SynRCC307_2492	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
SynRCC307_2494	COG1643	Atp-dependent helicase
SynRCC307_2496	COG0521	Mo-molybdopterin cofactor biosynthetic process
SynRCC307_2498	COG0314	molybdopterin synthase activity
SynRCC307_2499	COG0303	'Molybdopterin
SynRCC307_2500	COG0315	cyclic pyranopterin monophosphate synthase activity
SynRCC307_2501	COG0590	tRNA wobble adenosine to inosine editing
SynRCC307_2503	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
SynRCC307_2504	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SynRCC307_2505	COG0170	dolichyl monophosphate biosynthetic process
SynRCC307_2507	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
SynRCC307_2508	COG1049	propionate catabolic process, 2-methylcitrate cycle
SynRCC307_2512	COG0788	formyltetrahydrofolate deformylase activity
SynRCC307_2515	COG2022	thiamine diphosphate biosynthetic process
SynRCC307_2515	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
SynRCC307_2516	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
SynRCC307_2517	COG0443	Heat shock 70 kDa protein
SynRCC307_2518	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
SynRCC307_2520	COG0360	Binds together with S18 to 16S ribosomal RNA
SynRCC307_2522	COG0137	argininosuccinate synthase activity
SynRCC307_2525	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SynRCC307_2528	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
SynRCC307_2529	COG0438	transferase activity, transferring glycosyl groups
SynRCC307_2531	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
SynRCC307_2532	COG0497	DNA recombination
SynRCC307_2533	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
SynRCC307_2535	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine