locus-tag class description PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF02594 Uncharacterised ACR, YggU family COG1872 PF01934 Protein of unknown function DUF86 PF01934 Protein of unknown function DUF86 PF00266 Aminotransferase class-V PF05015 RelE-like toxin of type II toxin-antitoxin system HigB PF01381 Helix-turn-helix PF00266 Aminotransferase class-V PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF13546 DDE superfamily endonuclease PF07992 Pyridine nucleotide-disulphide oxidoreductase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02417 Chromate transporter PF00872 Transposase, Mutator family PF00534 Glycosyl transferases group 1 PF00862 Sucrose synthase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF03808 Glycosyl transferase WecB/TagA/CpsF family PF02397 Bacterial sugar transferase PF02397 Bacterial sugar transferase PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF10609 NUBPL iron-transfer P-loop NTPase PF01872 RibD C-terminal domain PF07885 Ion channel PF17655 Inward rectifier potassium channel C-terminal domain PF00561 alpha/beta hydrolase fold PF09234 Domain of unknown function (DUF1963) PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF01593 Flavin containing amine oxidoreductase PF03960 ArsC family PF13614 AAA domain PF13614 AAA domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF00472 RF-1 domain PF13438 Domain of unknown function (DUF4113) PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF11798 IMS family HHH motif PF13438 Domain of unknown function (DUF4113) PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF11798 IMS family HHH motif PF00717 Peptidase S24-like PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01609 Transposase DDE domain PF01850 PIN domain PF01867 CRISPR associated protein Cas1 PF09827 CRISPR associated protein Cas2 PF08681 Protein of unknown function (DUF1778) PF12965 Domain of unknown function (DUF3854) PF12965 Domain of unknown function (DUF3854) PF01381 Helix-turn-helix PF02796 Helix-turn-helix domain of resolvase PF00239 Resolvase, N terminal domain PF01661 Macro domain PF01867 CRISPR associated protein Cas1 PF09827 CRISPR associated protein Cas2 PF01867 CRISPR associated protein Cas1 PF01930 Domain of unknown function DUF83 PF09827 CRISPR associated protein Cas2 PF14490 Helix-hairpin-helix containing domain PF18335 ATP-dependent RecD-like DNA helicase SH3 domain PF13538 UvrD-like helicase C-terminal domain PF12161 HsdM N-terminal domain PF02384 N-6 DNA Methylase PF00135 Carboxylesterase family PF01047 MarR family PF02796 Helix-turn-helix domain of resolvase PF00239 Resolvase, N terminal domain PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF03060 Nitronate monooxygenase PF00583 Acetyltransferase (GNAT) family PF00931 NB-ARC domain PF00400 WD domain, G-beta repeat PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF13426 PAS domain PF00072 Response regulator receiver domain PF03960 ArsC family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00873 AcrB/AcrD/AcrF family PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00188 Cysteine-rich secretory protein family PF00188 Cysteine-rich secretory protein family PF02661 Fic/DOC family PF13784 Fic/DOC family N-terminal PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system PF11867 Domain of unknown function (DUF3387) PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF01863 Protein of unknown function DUF45 PF08378 Nuclease-related domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF13426 PAS domain PF00849 RNA pseudouridylate synthase PF01032 FecCD transport family PF04966 Carbohydrate-selective porin, OprB family PF04966 Carbohydrate-selective porin, OprB family PF04966 Carbohydrate-selective porin, OprB family PF04966 Carbohydrate-selective porin, OprB family PF04966 Carbohydrate-selective porin, OprB family PF00528 Binding-protein-dependent transport system inner membrane component PF00343 Carbohydrate phosphorylase PF00343 Carbohydrate phosphorylase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01741 Large-conductance mechanosensitive channel, MscL PF07499 RuvA, C-terminal domain PF01330 RuvA N terminal domain PF01940 Integral membrane protein DUF92 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF01425 Amidase PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF01597 Glycine cleavage H-protein PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF05670 NFACT protein RNA binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF00762 Ferrochelatase PF03816 Cell envelope-related transcriptional attenuator domain PF03816 Cell envelope-related transcriptional attenuator domain PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF04055 Radical SAM superfamily PF03109 ABC1 family PF03109 ABC1 family PF01541 GIY-YIG catalytic domain PF12826 Helix-hairpin-helix motif PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF01541 GIY-YIG catalytic domain PF12826 Helix-hairpin-helix motif PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF01266 FAD dependent oxidoreductase PF05690 Thiazole biosynthesis protein ThiG PF01266 FAD dependent oxidoreductase PF05690 Thiazole biosynthesis protein ThiG PF01520 N-acetylmuramoyl-L-alanine amidase PF11741 AMIN domain PF13580 SIS domain PF01333 Apocytochrome F, C-terminal PF16639 Apocytochrome F, N-terminal PF00355 Rieske [2Fe-2S] domain PF00737 Photosystem II 10 kDa phosphoprotein PF02468 Photosystem II reaction centre N protein (psbN) PF03480 Bacterial extracellular solute-binding protein, family 7 PF00400 WD domain, G-beta repeat PF00400 WD domain, G-beta repeat PF00561 alpha/beta hydrolase fold PF01261 Xylose isomerase-like TIM barrel PF03992 Antibiotic biosynthesis monooxygenase PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF01740 STAS domain PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF01740 STAS domain PF00672 HAMP domain PF07228 Stage II sporulation protein E (SpoIIE) PF00672 HAMP domain PF07228 Stage II sporulation protein E (SpoIIE) PF02531 PsaD PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF01791 DeoC/LacD family aldolase PF02678 Pirin PF17954 Quercetinase C-terminal cupin domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00488 MutS domain V PF01713 Smr domain PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF03109 ABC1 family PF00528 Binding-protein-dependent transport system inner membrane component PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF06055 Exopolysaccharide synthesis, ExoD PF02617 ATP-dependent Clp protease adaptor protein ClpS PF01032 FecCD transport family PF00348 Polyprenyl synthetase PF01250 Ribosomal protein S6 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF03130 PBS lyase HEAT-like repeat PF04055 Radical SAM superfamily PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00037 4Fe-4S binding domain PF00005 ABC transporter PF00005 ABC transporter PF06574 FAD synthetase PF01687 Riboflavin kinase PF00579 tRNA synthetases class I (W and Y) PF01966 HD domain PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF07085 DRTGG domain PF01515 Phosphate acetyl/butaryl transferase PF03749 Sugar fermentation stimulation protein RE domain PF17746 SfsA N-terminal OB domain PF01895 PhoU domain PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF04055 Radical SAM superfamily PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF04551 GcpE protein PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF02576 RimP N-terminal domain PF17384 RimP C-terminal SH3 domain PF06298 Photosystem II protein Y (PsbY) PF02219 Methylenetetrahydrofolate reductase PF02574 Homocysteine S-methyltransferase PF00266 Aminotransferase class-V PF02086 D12 class N6 adenine-specific DNA methyltransferase PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF01343 Peptidase family S49 PF10726 Protein of function (DUF2518) PF12697 Alpha/beta hydrolase family PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF04760 Translation initiation factor IF-2, N-terminal region PF04015 Domain of unknown function (DUF362) PF07963 Prokaryotic N-terminal methylation motif PF14245 Type IV pilin PilA PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus PF05175 Methyltransferase small domain PF00805 Pentapeptide repeats (8 copies) PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF00291 Pyridoxal-phosphate dependent enzyme PF00291 Pyridoxal-phosphate dependent enzyme PF07694 5TMR of 5TMR-LYT PF00990 Diguanylate cyclase, GGDEF domain PF13180 PDZ domain PF02163 Peptidase family M50 PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF14437 MafB19-like deaminase PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF10128 Glucose-6-phosphate dehydrogenase subunit PF01471 Putative peptidoglycan binding domain PF00005 ABC transporter PF01726 LexA DNA binding domain PF00717 Peptidase S24-like PF13085 2Fe-2S iron-sulfur cluster binding domain PF00072 Response regulator receiver domain PF00005 ABC transporter PF01040 UbiA prenyltransferase family PF08534 Redoxin PF01475 Ferric uptake regulator family PF03912 Psb28 protein PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00005 ABC transporter PF07685 CobB/CobQ-like glutamine amidotransferase domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF01520 N-acetylmuramoyl-L-alanine amidase PF01177 Asp/Glu/Hydantoin racemase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF14759 Reductase C-terminal PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF00654 Voltage gated chloride channel PF09367 CpeS-like protein PF00421 Photosystem II protein PF00124 Photosynthetic reaction centre protein PF00124 Photosynthetic reaction centre protein PF00308 Bacterial dnaA protein PF08299 Bacterial dnaA protein helix-turn-helix PF11638 DnaA N-terminal domain PF03965 Penicillinase repressor PF02222 ATP-grasp domain PF06803 Protein of unknown function (DUF1232) PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF01523 Putative modulator of DNA gyrase PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF16657 Maltogenic Amylase, C-terminal domain PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF10017 Histidine-specific methyltransferase, SAM-dependent PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF01624 MutS domain I PF05188 MutS domain II PF05192 MutS domain III PF05190 MutS family domain IV PF00488 MutS domain V PF00578 AhpC/TSA family PF00892 EamA-like transporter family PF00111 2Fe-2S iron-sulfur cluster binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07690 Major Facilitator Superfamily PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF01910 Thiamine-binding protein PF01329 Pterin 4 alpha carbinolamine dehydratase PF01593 Flavin containing amine oxidoreductase PF01124 MAPEG family PF00547 Urease, gamma subunit PF07885 Ion channel PF02254 TrkA-N domain PF00582 Universal stress protein family PF00582 Universal stress protein family PF11127 Protein of unknown function (DUF2892) PF00581 Rhodanese-like domain PF01925 Sulfite exporter TauE/SafE PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00459 Inositol monophosphatase family PF00155 Aminotransferase class I and II PF05151 Photosystem II reaction centre M protein (PsbM) PF01022 Bacterial regulatory protein, arsR family PF00230 Major intrinsic protein PF01131 DNA topoisomerase PF01751 Toprim domain PF13368 Topoisomerase C-terminal repeat PF12323 Helix-turn-helix domain PF01385 Probable transposase PF07282 Putative transposase DNA-binding domain PF00353 RTX calcium-binding nonapeptide repeat (4 copies) PF00850 Histone deacetylase domain PF00502 Phycobilisome protein PF00502 Phycobilisome protein PF01383 CpcD/allophycocyanin linker domain PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01842 ACT domain PF00211 Adenylate and Guanylate cyclase catalytic domain PF00255 Glutathione peroxidase PF01497 Periplasmic binding protein PF01497 Periplasmic binding protein PF00491 Arginase family PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF03209 PUCC protein PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF03575 Peptidase family S51 PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF08443 RimK-like ATP-grasp domain PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02392 Ycf4 PF05685 Putative restriction endonuclease PF02540 NAD synthase PF07977 FabA-like domain PF04029 2-phosphosulpholactate phosphatase PF00881 Nitroreductase family PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF00478 IMP dehydrogenase / GMP reductase domain PF00528 Binding-protein-dependent transport system inner membrane component PF03435 Saccharopine dehydrogenase NADP binding domain PF00950 ABC 3 transport family PF00005 ABC transporter PF01297 Zinc-uptake complex component A periplasmic PF07689 KaiB domain PF06745 KaiC PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00999 Sodium/hydrogen exchanger family PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF18698 Histidine kinase sensor domain PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF18698 Histidine kinase sensor domain PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF03814 Potassium-transporting ATPase A subunit PF02669 K+-transporting ATPase, c chain PF02702 Osmosensitive K+ channel His kinase sensor domain PF01593 Flavin containing amine oxidoreductase PF12557 Cob(I)alamin adenosyltransferase N terminal PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PF08486 Stage II sporulation protein PF08486 Stage II sporulation protein PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF12697 Alpha/beta hydrolase family PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF10742 Protein of unknown function (DUF2555) PF00258 Flavodoxin PF00421 Photosystem II protein PF01926 50S ribosome-binding GTPase PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF16363 GDP-mannose 4,6 dehydratase PF16363 GDP-mannose 4,6 dehydratase PF10792 Protein of unknown function (DUF2605) PF04485 Phycobilisome degradation protein nblA PF00005 ABC transporter PF08402 TOBE domain PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF04960 Glutaminase PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00510 Cytochrome c oxidase subunit III PF02571 Precorrin-6x reductase CbiJ/CobK PF01430 Hsp33 protein PF00141 Peroxidase PF05140 ResB-like family PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF13243 Squalene-hopene cyclase C-terminal domain PF13249 Squalene-hopene cyclase N-terminal domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01241 Photosystem I psaG / psaK PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF00085 Thioredoxin PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PF01152 Bacterial-like globin PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF07883 Cupin domain PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02660 Glycerol-3-phosphate acyltransferase PF00156 Phosphoribosyl transferase domain PF00361 Proton-conducting membrane transporter PF02796 Helix-turn-helix domain of resolvase PF00239 Resolvase, N terminal domain PF01758 Sodium Bile acid symporter family PF00248 Aldo/keto reductase family PF13180 PDZ domain PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF11283 Protein of unknown function (DUF3084) PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00149 Calcineurin-like phosphoesterase PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF13439 Glycosyltransferase Family 4 PF13439 Glycosyltransferase Family 4 PF02386 Cation transport protein PF02504 Fatty acid synthesis protein PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF01513 ATP-NAD kinase PF11264 Thylakoid formation protein PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF01040 UbiA prenyltransferase family PF00248 Aldo/keto reductase family PF03742 PetN PF16360 GTP-binding GTPase Middle Region PF13167 GTP-binding GTPase N-terminal PF01926 50S ribosome-binding GTPase PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF00005 ABC transporter PF00571 CBS domain PF01380 SIS domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00578 AhpC/TSA family PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF04199 Putative cyclase PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01380 SIS domain PF00535 Glycosyl transferase family 2 PF00490 Delta-aminolevulinic acid dehydratase PF01761 3-dehydroquinate synthase PF00873 AcrB/AcrD/AcrF family PF01613 Flavin reductase like domain PF00258 Flavodoxin PF01523 Putative modulator of DNA gyrase PF05175 Methyltransferase small domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF05221 S-adenosyl-L-homocysteine hydrolase PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00989 PAS fold PF00072 Response regulator receiver domain PF00497 Bacterial extracellular solute-binding proteins, family 3 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00374 Nickel-dependent hydrogenase PF01613 Flavin reductase like domain PF00753 Metallo-beta-lactamase superfamily PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF00384 Molybdopterin oxidoreductase PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF00037 4Fe-4S binding domain PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF13460 NAD(P)H-binding PF00595 PDZ domain PF03572 Peptidase family S41 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family PF01701 Photosystem I reaction centre subunit IX / PsaJ PF02507 Photosystem I reaction centre subunit III PF00814 Glycoprotease family PF05239 PRC-barrel domain PF01782 RimM N-terminal domain PF16363 GDP-mannose 4,6 dehydratase PF01300 Telomere recombination PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF03309 Type III pantothenate kinase PF01969 Protein of unknown function DUF111 PF10716 NADH dehydrogenase transmembrane subunit PF03099 Biotin/lipoate A/B protein ligase family PF00425 chorismate binding enzyme PF00795 Carbon-nitrogen hydrolase PF00231 ATP synthase PF02597 ThiS family PF00834 Ribulose-phosphate 3 epimerase family PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF00306 ATP synthase alpha/beta chain, C terminal domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF01545 Cation efflux family PF16916 Dimerisation domain of Zinc Transporter PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N PF00889 Elongation factor TS PF00318 Ribosomal protein S2 PF01699 Sodium/calcium exchanger protein PF00692 dUTPase PF00213 ATP synthase delta (OSCP) subunit PF00571 CBS domain PF01595 Cyclin M transmembrane N-terminal domain PF04244 Deoxyribodipyrimidine photo-lyase-related protein PF00571 CBS domain PF01743 Poly A polymerase head domain PF02405 Permease MlaE PF02405 Permease MlaE PF00430 ATP synthase B/B' CF(0) PF02224 Cytidylate kinase PF02569 Pantoate-beta-alanine ligase PF00484 Carbonic anhydrase PF00132 Bacterial transferase hexapeptide (six repeats) PF00342 Phosphoglucose isomerase PF00487 Fatty acid desaturase PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF00430 ATP synthase B/B' CF(0) PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF02310 B12 binding domain PF13282 Domain of unknown function (DUF4070) PF04055 Radical SAM superfamily PF00132 Bacterial transferase hexapeptide (six repeats) PF01455 HupF/HypC family PF01040 UbiA prenyltransferase family PF02628 Cytochrome oxidase assembly protein PF00137 ATP synthase subunit C PF03480 Bacterial extracellular solute-binding protein, family 7 PF00563 EAL domain PF00498 FHA domain PF00990 Diguanylate cyclase, GGDEF domain PF00563 EAL domain PF00498 FHA domain PF00990 Diguanylate cyclase, GGDEF domain PF09150 Orange carotenoid protein, N-terminal PF02136 Nuclear transport factor 2 (NTF2) domain PF18032 Photoprotection regulator fluorescence recovery protein PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 GTP cyclohydrolase II PF00977 Histidine biosynthesis protein PF00119 ATP synthase A chain PF02514 CobN/Magnesium Chelatase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF01435 Peptidase family M48 PF12966 N-ATPase, AtpR subunit PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF01960 ArgJ family PF01894 Uncharacterised protein family UPF0047 PF12452 Protein of unknown function (DUF3685) PF00072 Response regulator receiver domain PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00005 ABC transporter PF08402 TOBE domain PF02361 Cobalt transport protein PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF01126 Heme oxygenase PF02915 Rubrerythrin PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07689 KaiB domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00005 ABC transporter PF09383 NIL domain PF00355 Rieske [2Fe-2S] domain PF00575 S1 RNA binding domain PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF00124 Photosynthetic reaction centre protein PF00124 Photosynthetic reaction centre protein PF03481 Putative GTP-binding controlling metal-binding PF01300 Telomere recombination PF00582 Universal stress protein family PF02529 Cytochrome B6-F complex subunit 5 PF00149 Calcineurin-like phosphoesterase PF02570 Precorrin-8X methylmutase PF02570 Precorrin-8X methylmutase PF00468 Ribosomal protein L34 PF00825 Ribonuclease P PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF02096 60Kd inner membrane protein PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00459 Inositol monophosphatase family PF00459 Inositol monophosphatase family PF00111 2Fe-2S iron-sulfur cluster binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00877 NlpC/P60 family PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF01521 Iron-sulphur cluster biosynthesis PF00106 short chain dehydrogenase PF00027 Cyclic nucleotide-binding domain PF00325 Bacterial regulatory proteins, crp family PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF00892 EamA-like transporter family PF00355 Rieske [2Fe-2S] domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF16861 Carbamoyltransferase C-terminus PF02543 Carbamoyltransferase N-terminus PF01098 Cell cycle protein PF03808 Glycosyl transferase WecB/TagA/CpsF family PF04966 Carbohydrate-selective porin, OprB family PF00395 S-layer homology domain PF04966 Carbohydrate-selective porin, OprB family PF00395 S-layer homology domain PF11104 Type IV pilus assembly protein PilM; PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF01171 PP-loop family PF09179 TilS substrate binding domain PF00005 ABC transporter PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00144 Beta-lactamase PF11805 Protein of unknown function (DUF3326) PF02517 CPBP intramembrane metalloprotease PF01594 AI-2E family transporter PF01594 AI-2E family transporter PF00694 Aconitase C-terminal domain PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF00487 Fatty acid desaturase PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF01243 Pyridoxamine 5'-phosphate oxidase PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF02934 GatB/GatE catalytic domain PF02637 GatB domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF01256 Carbohydrate kinase PF03853 YjeF-related protein N-terminus PF02492 CobW/HypB/UreG, nucleotide-binding domain PF02016 LD-carboxypeptidase N-terminal domain PF17676 LD-carboxypeptidase C-terminal domain PF00805 Pentapeptide repeats (8 copies) PF00497 Bacterial extracellular solute-binding proteins, family 3 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF00338 Ribosomal protein S10p/S20e PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF04168 A predicted alpha-helical domain with a conserved ER motif. PF14403 Circularly permuted ATP-grasp type 2 PF00177 Ribosomal protein S7p/S5e PF00164 Ribosomal protein S12/S23 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF02502 Ribose/Galactose Isomerase PF03477 ATP cone domain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF01747 ATP-sulfurylase PF14306 PUA-like domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01494 FAD binding domain PF00465 Iron-containing alcohol dehydrogenase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF01169 Uncharacterized protein family UPF0016 PF01169 Uncharacterized protein family UPF0016 PF00255 Glutathione peroxidase PF00474 Sodium:solute symporter family PF01266 FAD dependent oxidoreductase PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF00982 Glycosyltransferase family 20 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PF00829 Ribosomal prokaryotic L21 protein PF01016 Ribosomal L27 protein PF01427 D-ala-D-ala dipeptidase PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF00005 ABC transporter PF08239 Bacterial SH3 domain PF00171 Aldehyde dehydrogenase family PF02441 Flavoprotein PF00266 Aminotransferase class-V PF03704 Bacterial transcriptional activator domain PF00498 FHA domain PF00486 Transcriptional regulatory protein, C terminal PF00483 Nucleotidyl transferase PF00483 Nucleotidyl transferase PF02629 CoA binding domain PF00549 CoA-ligase PF01070 FMN-dependent dehydrogenase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02427 Photosystem I reaction centre subunit IV / PsaE PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF06827 Zinc finger found in FPG and IleRS PF00795 Carbon-nitrogen hydrolase PF02540 NAD synthase PF14332 Domain of unknown function (DUF4388) PF00072 Response regulator receiver domain PF14332 Domain of unknown function (DUF4388) PF00072 Response regulator receiver domain PF14332 Domain of unknown function (DUF4388) PF00072 Response regulator receiver domain PF14332 Domain of unknown function (DUF4388) PF00072 Response regulator receiver domain PF14332 Domain of unknown function (DUF4388) PF00072 Response regulator receiver domain PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF00805 Pentapeptide repeats (8 copies) PF00069 Protein kinase domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00582 Universal stress protein family PF00311 Phosphoenolpyruvate carboxylase PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF08353 Domain of unknown function (DUF1727) PF08245 Mur ligase middle domain PF01593 Flavin containing amine oxidoreductase PF00248 Aldo/keto reductase family PF00274 Fructose-bisphosphate aldolase class-I PF01758 Sodium Bile acid symporter family PF03358 NADPH-dependent FMN reductase PF01451 Low molecular weight phosphotyrosine protein phosphatase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF01728 FtsJ-like methyltransferase PF01479 S4 domain PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF05116 Sucrose-6F-phosphate phosphohydrolase PF00636 Ribonuclease III domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF02545 Maf-like protein PF03055 Retinal pigment epithelial membrane protein PF03055 Retinal pigment epithelial membrane protein PF02617 ATP-dependent Clp protease adaptor protein ClpS PF00535 Glycosyl transferase family 2 PF00719 Inorganic pyrophosphatase PF10664 Cyanobacterial and plastid NDH-1 subunit M PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF00293 NUDIX domain PF09297 NADH pyrophosphatase zinc ribbon domain PF02152 Dihydroneopterin aldolase PF01810 LysE type translocator PF00581 Rhodanese-like domain PF00899 ThiF family PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF02397 Bacterial sugar transferase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF01192 RNA polymerase Rpb6 PF01668 SmpB protein PF12706 Beta-lactamase superfamily domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13847 Methyltransferase domain PF10119 Predicted methyltransferase regulatory domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF00485 Phosphoribulokinase / Uridine kinase family PF01383 CpcD/allophycocyanin linker domain PF00970 Oxidoreductase FAD-binding domain PF00175 Oxidoreductase NAD-binding domain PF13326 Photosystem II Pbs27 PF00035 Double-stranded RNA binding motif PF14622 Ribonuclease-III-like PF03649 Uncharacterised protein family (UPF0014) PF06206 CpeT/CpcT family (DUF1001) PF01066 CDP-alcohol phosphatidyltransferase PF01613 Flavin reductase like domain PF00258 Flavodoxin PF02463 RecF/RecN/SMC N terminal domain PF13640 2OG-Fe(II) oxygenase superfamily PF13640 2OG-Fe(II) oxygenase superfamily PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF01716 Manganese-stabilising protein / photosystem II polypeptide PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF01112 Asparaginase PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF10397 Adenylosuccinate lyase C-terminus PF00206 Lyase PF00699 Urease beta subunit PF08241 Methyltransferase domain PF08241 Methyltransferase domain PF09115 DNA polymerase III, delta subunit, C terminal PF06745 KaiC PF18073 Rubredoxin metal binding domain PF00999 Sodium/hydrogen exchanger family PF01029 NusB family PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17764 3′ DNA-binding domain (3′BD) PF18074 Primosomal protein N C-terminal domain PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF00355 Rieske [2Fe-2S] domain PF00487 Fatty acid desaturase PF02080 TrkA-C domain PF02254 TrkA-N domain PF04020 Mycobacterial 4 TMS phage holin, superfamily IV PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF00886 Ribosomal protein S16 PF00120 Glutamine synthetase, catalytic domain PF18318 Glutamine synthetase C-terminal domain PF12437 Glutamine synthetase type III N terminal PF14495 Cytochrome c-550 domain PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF02347 Glycine cleavage system P-protein PF00101 Ribulose bisphosphate carboxylase, small chain PF00162 Phosphoglycerate kinase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF05368 NmrA-like family PF05368 NmrA-like family PF01513 ATP-NAD kinase PF03319 Ethanolamine utilisation protein EutN/carboxysome PF01725 Ham1 family PF00543 Nitrogen regulatory protein P-II PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF00892 EamA-like transporter family PF01979 Amidohydrolase family PF01209 ubiE/COQ5 methyltransferase family PF00936 BMC domain PF00400 WD domain, G-beta repeat PF00111 2Fe-2S iron-sulfur cluster binding domain PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF07992 Pyridine nucleotide-disulphide oxidoreductase PF03793 PASTA domain PF00069 Protein kinase domain PF02653 Branched-chain amino acid transport system / permease component PF11862 Domain of unknown function (DUF3382) PF01765 Ribosome recycling factor PF00696 Amino acid kinase family PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF00873 AcrB/AcrD/AcrF family PF00482 Type II secretion system (T2SS), protein F PF00482 Type II secretion system (T2SS), protein F PF00574 Clp protease PF00574 Clp protease PF05195 Aminopeptidase P, N-terminal domain PF00557 Metallopeptidase family M24 PF01048 Phosphorylase superfamily PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term PF00144 Beta-lactamase PF03186 CobD/Cbib protein PF03462 PCRF domain PF00472 RF-1 domain PF00654 Voltage gated chloride channel PF05419 GUN4-like PF16416 ARM-like repeat domain, GUN4-N terminal PF17853 GGDEF-like domain PF12833 Helix-turn-helix domain PF07963 Prokaryotic N-terminal methylation motif PF08334 Type II secretion system (T2SS), protein G PF00561 alpha/beta hydrolase fold PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PF00676 Dehydrogenase E1 component PF00334 Nucleoside diphosphate kinase PF00355 Rieske [2Fe-2S] domain PF01008 Initiation factor 2 subunit family PF01553 Acyltransferase PF01435 Peptidase family M48 PF06745 KaiC PF00535 Glycosyl transferase family 2 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF01676 Metalloenzyme superfamily PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF11780 Protein of unknown function (DUF3318) PF00403 Heavy-metal-associated domain PF01709 Transcriptional regulator PF04107 Glutamate-cysteine ligase family 2(GCS2) PF00588 SpoU rRNA Methylase family PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF03099 Biotin/lipoate A/B protein ligase family PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF08865 Domain of unknown function (DUF1830) PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF07650 KH domain PF01926 50S ribosome-binding GTPase PF01740 STAS domain PF00916 Sulfate permease family PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF00528 Binding-protein-dependent transport system inner membrane component PF00805 Pentapeptide repeats (8 copies) PF00805 Pentapeptide repeats (8 copies) PF00677 Lumazine binding domain PF00528 Binding-protein-dependent transport system inner membrane component PF01451 Low molecular weight phosphotyrosine protein phosphatase PF00480 ROK family PF03040 CemA family PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF12838 4Fe-4S dicluster domain PF00361 Proton-conducting membrane transporter PF17863 AAA lid domain PF01078 Magnesium chelatase, subunit ChlI PF13519 von Willebrand factor type A domain PF00427 Phycobilisome Linker polypeptide PF00502 Phycobilisome protein PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF02583 Metal-sensitive transcriptional repressor PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF00012 Hsp70 protein PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF01276 Orn/Lys/Arg decarboxylase, major domain PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PF02602 Uroporphyrinogen-III synthase HemD PF00400 WD domain, G-beta repeat PF02565 Recombination protein O C terminal PF11967 Recombination protein O N terminal PF13649 Methyltransferase domain PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF00128 Alpha amylase, catalytic domain PF02806 Alpha amylase, C-terminal all-beta domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF01933 Uncharacterised protein family UPF0052 PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08447 PAS fold PF08448 PAS fold PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) PF00873 AcrB/AcrD/AcrF family PF00171 Aldehyde dehydrogenase family PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF10674 Protein of unknown function (DUF2488) PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF14403 Circularly permuted ATP-grasp type 2 PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF01434 Peptidase family M41 PF01804 Penicillin amidase PF02223 Thymidylate kinase PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF00266 Aminotransferase class-V PF00156 Phosphoribosyl transferase domain PF01476 LysM domain PF03734 L,D-transpeptidase catalytic domain PF01641 SelR domain PF00148 Nitrogenase component 1 type Oxidoreductase PF08369 Proto-chlorophyllide reductase 57 kD subunit PF00083 Sugar (and other) transporter PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF00132 Bacterial transferase hexapeptide (six repeats) PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF00453 Ribosomal protein L20 PF13180 PDZ domain PF01632 Ribosomal protein L35 PF04002 RadC-like JAB domain PF00581 Rhodanese-like domain PF17773 UPF0176 acylphosphatase like domain PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF00005 ABC transporter PF00072 Response regulator receiver domain PF00156 Phosphoribosyl transferase domain PF01405 Photosystem II reaction centre T protein PF03477 ATP cone domain PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF02033 Ribosome-binding factor A PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF01593 Flavin containing amine oxidoreductase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF07689 KaiB domain PF00121 Triosephosphate isomerase PF01594 AI-2E family transporter PF00033 Cytochrome b/b6/petB PF00032 Cytochrome b(C-terminal)/b6/petD PF07670 Nucleoside recognition PF00035 Double-stranded RNA binding motif PF14622 Ribonuclease-III-like PF00708 Acylphosphatase PF17788 HypF Kae1-like domain PF01300 Telomere recombination PF07503 HypF finger PF02401 LytB protein PF07670 Nucleoside recognition PF00005 ABC transporter PF01165 Ribosomal protein S21 PF02446 4-alpha-glucanotransferase PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF00528 Binding-protein-dependent transport system inner membrane component PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF01116 Fructose-bisphosphate aldolase class-II PF00202 Aminotransferase class-III PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00595 PDZ domain PF03572 Peptidase family S41 PF00595 PDZ domain PF03572 Peptidase family S41 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain PF02341 RbcX protein PF00101 Ribulose bisphosphate carboxylase, small chain PF02308 MgtC family PF02684 Lipid-A-disaccharide synthetase PF00111 2Fe-2S iron-sulfur cluster binding domain PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF10415 Fumarase C C-terminus PF00206 Lyase PF00155 Aminotransferase class I and II PF03109 ABC1 family PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17191 RecG wedge domain PF01343 Peptidase family S49 PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF00145 C-5 cytosine-specific DNA methylase PF02673 Bacitracin resistance protein BacA PF01488 Shikimate / quinate 5-dehydrogenase PF11266 Long-chain fatty aldehyde decarbonylase PF00483 Nucleotidyl transferase PF05746 DALR anticodon binding domain PF02092 Glycyl-tRNA synthetase beta subunit PF01134 Glucose inhibited division protein A PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13426 PAS domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13426 PAS domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13426 PAS domain PF00127 Copper binding proteins, plastocyanin/azurin family PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF00902 Sec-independent protein translocase protein (TatC) PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF00730 HhH-GPD superfamily base excision DNA repair protein PF09335 SNARE associated Golgi protein PF00085 Thioredoxin PF00118 TCP-1/cpn60 chaperonin family PF00005 ABC transporter PF04286 Protein of unknown function (DUF445) PF03061 Thioesterase superfamily PF13378 Enolase C-terminal domain-like PF03653 Uncharacterised protein family (UPF0093) PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF00364 Biotin-requiring enzyme PF00936 BMC domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF01507 Phosphoadenosine phosphosulfate reductase family PF00155 Aminotransferase class I and II PF00285 Citrate synthase, C-terminal domain PF00300 Histidine phosphatase superfamily (branch 1) PF12697 Alpha/beta hydrolase family PF16653 Saccharopine dehydrogenase C-terminal domain PF03435 Saccharopine dehydrogenase NADP binding domain PF12706 Beta-lactamase superfamily domain PF02472 Biopolymer transport protein ExbD/TolR PF02472 Biopolymer transport protein ExbD/TolR PF02472 Biopolymer transport protein ExbD/TolR PF02472 Biopolymer transport protein ExbD/TolR PF01628 HrcA protein C terminal domain PF01842 ACT domain PF00551 Formyl transferase PF00484 Carbonic anhydrase PF00043 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF10369 Small subunit of acetolactate synthase PF02130 Uncharacterized protein family UPF0054 PF01219 Prokaryotic diacylglycerol kinase PF01202 Shikimate kinase PF00117 Glutamine amidotransferase class-I PF01040 UbiA prenyltransferase family PF00497 Bacterial extracellular solute-binding proteins, family 3 PF01594 AI-2E family transporter PF01594 AI-2E family transporter PF13202 EF hand PF00923 Transaldolase/Fructose-6-phosphate aldolase PF00012 Hsp70 protein PF01025 GrpE PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF02926 THUMP domain PF01170 Putative RNA methylase family UPF0020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF01883 Iron-sulfur cluster assembly protein PF10609 NUBPL iron-transfer P-loop NTPase PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF00171 Aldehyde dehydrogenase family PF01590 GAF domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08446 PAS fold PF00360 Phytochrome region PF00072 Response regulator receiver domain PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02151 UvrB/uvrC motif PF12344 Ultra-violet resistance protein B PF17757 UvrB interaction domain PF02374 Anion-transporting ATPase PF17886 HSP20-like domain found in ArsA PF06596 Photosystem II reaction centre X protein (PsbX) PF00551 Formyl transferase PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF01434 Peptidase family M41 PF05175 Methyltransferase small domain PF17827 PrmC N-terminal domain PF08264 Anticodon-binding domain of tRNA PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF03023 Lipid II flippase MurJ PF01625 Peptide methionine sulfoxide reductase PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF01842 ACT domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF01648 4'-phosphopantetheinyl transferase superfamily PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF01409 tRNA synthetases class II core domain (F) PF00999 Sodium/hydrogen exchanger family PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF11412 Disulphide bond corrector protein DsbC PF02683 Cytochrome C biogenesis protein transmembrane region PF08534 Redoxin PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12849 PBP superfamily domain PF12849 PBP superfamily domain PF00253 Ribosomal protein S14p/S29e PF04012 PspA/IM30 family PF04012 PspA/IM30 family PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF01169 Uncharacterized protein family UPF0016 PF17864 RuvB AAA lid domain PF05491 RuvB C-terminal winged helix domain PF05496 Holliday junction DNA helicase RuvB P-loop domain PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF02654 Cobalamin-5-phosphate synthase PF02091 Glycyl-tRNA synthetase alpha subunit PF00924 Mechanosensitive ion channel PF05552 Conserved TM helix PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF10693 Protein of unknown function (DUF2499) PF03092 BT1 family PF01207 Dihydrouridine synthase (Dus) PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF16582 Middle domain of thiamine pyrophosphate PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF00795 Carbon-nitrogen hydrolase PF01618 MotA/TolQ/ExbB proton channel family PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF09334 tRNA synthetases class I (M) PF01966 HD domain PF13286 Phosphohydrolase-associated domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00300 Histidine phosphatase superfamily (branch 1) PF00999 Sodium/hydrogen exchanger family PF00582 Universal stress protein family PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF00535 Glycosyl transferase family 2 PF00005 ABC transporter PF01891 Cobalt uptake substrate-specific transmembrane region PF13477 Glycosyl transferase 4-like PF00534 Glycosyl transferases group 1 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF00132 Bacterial transferase hexapeptide (six repeats) PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF03330 Lytic transglycolase PF00171 Aldehyde dehydrogenase family PF01842 ACT domain PF01817 Chorismate mutase type II PF00800 Prephenate dehydratase PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF00156 Phosphoribosyl transferase domain PF01227 GTP cyclohydrolase I PF02464 Competence-damaged protein PF18146 Damage-inducible protein CinA KH domain PF00994 Probable molybdopterin binding domain PF02021 Uncharacterised protein family UPF0102 PF04122 Putative cell wall binding repeat 2 PF08486 Stage II sporulation protein PF00581 Rhodanese-like domain PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF13091 PLD-like domain PF13230 Glutamine amidotransferases class-II PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF02754 Cysteine-rich domain PF02325 YGGT family PF02325 YGGT family PF06472 ABC transporter transmembrane region 2 PF00005 ABC transporter PF13533 Biotin-lipoyl like PF03061 Thioesterase superfamily PF00749 tRNA synthetases class I (E and Q), catalytic domain PF04055 Radical SAM superfamily PF02941 Ferredoxin thioredoxin reductase variable alpha chain PF01809 Putative membrane protein insertion efficiency factor PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF16859 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF01554 MatE PF00553 Cellulose binding domain PF00942 Cellulose binding domain PF00041 Fibronectin type III domain PF00759 Glycosyl hydrolase family 9 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF02560 Cyanate lyase C-terminal domain PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF01967 MoaC family PF12804 MobA-like NTP transferase domain PF02391 MoaE protein PF01078 Magnesium chelatase, subunit ChlI PF13335 Magnesium chelatase, subunit ChlI C-terminal PF02310 B12 binding domain PF04055 Radical SAM superfamily PF00421 Photosystem II protein PF00155 Aminotransferase class I and II PF00557 Metallopeptidase family M24 PF00293 NUDIX domain PF02261 Aspartate decarboxylase PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF11910 Cyanobacterial and plant NDH-1 subunit O PF01195 Peptidyl-tRNA hydrolase PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) PF13458 Periplasmic binding protein PF03471 Transporter associated domain PF00999 Sodium/hydrogen exchanger family PF02080 TrkA-C domain PF00557 Metallopeptidase family M24 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain PF12697 Alpha/beta hydrolase family PF12697 Alpha/beta hydrolase family PF12697 Alpha/beta hydrolase family PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF08279 HTH domain PF07884 Vitamin K epoxide reductase family PF01613 Flavin reductase like domain PF00753 Metallo-beta-lactamase superfamily PF02811 PHP domain PF11074 Domain of unknown function(DUF2779) PF01253 Translation initiation factor SUI1 PF01928 CYTH domain PF01928 CYTH domain PF00067 Cytochrome P450 PF11016 Protein of unknown function (DUF2854) PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF01209 ubiE/COQ5 methyltransferase family PF06838 Methionine gamma-lyase PF12849 PBP superfamily domain PF01370 NAD dependent epimerase/dehydratase family PF01370 NAD dependent epimerase/dehydratase family PF00326 Prolyl oligopeptidase family PF00471 Ribosomal protein L33 PF01084 Ribosomal protein S18 PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF01740 STAS domain PF00916 Sulfate permease family PF01740 STAS domain PF00916 Sulfate permease family PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF14528 LAGLIDADG-like domain PF16363 GDP-mannose 4,6 dehydratase PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF08241 Methyltransferase domain PF00762 Ferrochelatase PF01425 Amidase PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF13735 tRNA nucleotidyltransferase domain 2 putative PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF05685 Putative restriction endonuclease PF13085 2Fe-2S iron-sulfur cluster binding domain PF02082 Transcriptional regulator PF01467 Cytidylyltransferase-like PF02527 rRNA small subunit methyltransferase G PF01584 CheW-like domain PF09078 CheY binding PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF01458 Uncharacterized protein family (UPF0051) PF00005 ABC transporter PF01458 Uncharacterized protein family (UPF0051) PF00266 Aminotransferase class-V PF02374 Anion-transporting ATPase PF17886 HSP20-like domain found in ArsA PF08645 Polynucleotide kinase 3 phosphatase PF13580 SIS domain PF01242 6-pyruvoyl tetrahydropterin synthase PF00361 Proton-conducting membrane transporter PF00437 Type II/IV secretion system protein PF00075 RNase H PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF04055 Radical SAM superfamily PF18693 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00117 Glutamine amidotransferase class-I PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF00012 Hsp70 protein PF01593 Flavin containing amine oxidoreductase PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00171 Aldehyde dehydrogenase family PF00535 Glycosyl transferase family 2 PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF01596 O-methyltransferase PF01593 Flavin containing amine oxidoreductase PF00475 Imidazoleglycerol-phosphate dehydratase PF13847 Methyltransferase domain PF07689 KaiB domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF07444 Ycf66 protein N-terminus PF00106 short chain dehydrogenase PF00155 Aminotransferase class I and II PF09335 SNARE associated Golgi protein PF00924 Mechanosensitive ion channel PF12795 Mechanosensitive ion channel porin domain PF12794 Mechanosensitive ion channel inner membrane domain 1 PF00924 Mechanosensitive ion channel PF12795 Mechanosensitive ion channel porin domain PF12794 Mechanosensitive ion channel inner membrane domain 1 PF01618 MotA/TolQ/ExbB proton channel family PF13416 Bacterial extracellular solute-binding protein PF00805 Pentapeptide repeats (8 copies) PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00583 Acetyltransferase (GNAT) family PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase PF01746 tRNA (Guanine-1)-methyltransferase PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF02547 Queuosine biosynthesis protein PF13545 Crp-like helix-turn-helix domain PF02685 Glucokinase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF07690 Major Facilitator Superfamily PF00924 Mechanosensitive ion channel PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF00365 Phosphofructokinase PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF00085 Thioredoxin PF02350 UDP-N-acetylglucosamine 2-epimerase PF00535 Glycosyl transferase family 2 PF13181 Tetratricopeptide repeat PF12805 FUSC-like inner membrane protein yccS PF00909 Ammonium Transporter Family PF01081 KDPG and KHG aldolase PF07698 7TM receptor with intracellular HD hydrolase PF07697 7TM-HD extracellular PF01966 HD domain PF00092 von Willebrand factor type A domain PF18579 Rubisco accumulation factor 1 helix turn helix domain PF18578 Rubisco accumulation factor 1 alpha helical domain PF18087 Rubisco Assembly chaperone C-terminal domain PF13614 AAA domain PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) PF04055 Radical SAM superfamily PF03109 ABC1 family PF13614 AAA domain PF13614 AAA domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF05996 Ferredoxin-dependent bilin reductase PF01964 Radical SAM ThiC family PF00588 SpoU rRNA Methylase family PF02503 Polyphosphate kinase middle domain PF13090 Polyphosphate kinase C-terminal domain 2 PF17941 Polyphosphate kinase C-terminal domain 1 PF13089 Polyphosphate kinase N-terminal domain PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF03776 Septum formation topological specificity factor MinE PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF03775 Septum formation inhibitor MinC, C-terminal domain PF12773 Double zinc ribbon PF00498 FHA domain PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF01209 ubiE/COQ5 methyltransferase family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF01494 FAD binding domain PF09335 SNARE associated Golgi protein PF02872 5'-nucleotidase, C-terminal domain PF00583 Acetyltransferase (GNAT) family PF02310 B12 binding domain PF04055 Radical SAM superfamily PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF06965 Na+/H+ antiporter 1 PF13462 Thioredoxin PF00561 alpha/beta hydrolase fold PF00106 short chain dehydrogenase PF00905 Penicillin binding protein transpeptidase domain PF00557 Metallopeptidase family M24 PF01467 Cytidylyltransferase-like PF00293 NUDIX domain PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00873 AcrB/AcrD/AcrF family PF07690 Major Facilitator Superfamily PF02570 Precorrin-8X methylmutase PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF01022 Bacterial regulatory protein, arsR family PF00403 Heavy-metal-associated domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00795 Carbon-nitrogen hydrolase PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01061 ABC-2 type transporter PF00005 ABC transporter PF00498 FHA domain PF00069 Protein kinase domain PF08239 Bacterial SH3 domain PF01679 Proteolipid membrane potential modulator PF05378 Hydantoinase/oxoprolinase N-terminal region PF01968 Hydantoinase/oxoprolinase PF12867 DinB superfamily PF03781 Sulfatase-modifying factor enzyme 1 PF13411 MerR HTH family regulatory protein PF01565 FAD binding domain PF01544 CorA-like Mg2+ transporter protein PF01544 CorA-like Mg2+ transporter protein PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF01612 3'-5' exonuclease PF01042 Endoribonuclease L-PSP PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF14489 QueF-like protein PF03706 Lysylphosphatidylglycerol synthase TM region PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF08041 PetM family of cytochrome b6f complex subunit 7 PF01702 Queuine tRNA-ribosyltransferase PF03683 Uncharacterised protein family (UPF0175) PF00953 Glycosyl transferase family 4 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PF00924 Mechanosensitive ion channel PF00365 Phosphofructokinase PF10371 Domain of unknown function PF17147 Pyruvate:ferredoxin oxidoreductase core domain II PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00005 ABC transporter PF08402 TOBE domain PF00005 ABC transporter PF08402 TOBE domain PF05969 Photosystem II complex subunit Ycf12 PF01790 Prolipoprotein diacylglyceryl transferase PF00534 Glycosyl transferases group 1 PF00862 Sucrose synthase PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01590 GAF domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01590 GAF domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01590 GAF domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF01063 Amino-transferase class IV PF02686 Glu-tRNAGln amidotransferase C subunit PF01903 CbiX PF00781 Diacylglycerol kinase catalytic domain PF02142 MGS-like domain PF00155 Aminotransferase class I and II PF01218 Coproporphyrinogen III oxidase PF07085 DRTGG domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00005 ABC transporter PF00361 Proton-conducting membrane transporter PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF01126 Heme oxygenase PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus PF02548 Ketopantoate hydroxymethyltransferase PF06508 Queuosine biosynthesis protein QueC PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF12706 Beta-lactamase superfamily domain PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01464 Transglycosylase SLT domain PF14718 Soluble lytic murein transglycosylase L domain PF00082 Subtilase family PF01208 Uroporphyrinogen decarboxylase (URO-D) PF00294 pfkB family carbohydrate kinase PF01255 Putative undecaprenyl diphosphate synthase PF02457 DisA bacterial checkpoint controller nucleotide-binding PF00830 Ribosomal L28 family PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF00535 Glycosyl transferase family 2 PF00117 Glutamine amidotransferase class-I PF00574 Clp protease PF00291 Pyridoxal-phosphate dependent enzyme PF00005 ABC transporter PF05154 TM2 domain PF00248 Aldo/keto reductase family PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF02080 TrkA-C domain PF02254 TrkA-N domain PF02080 TrkA-C domain PF02254 TrkA-N domain PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF00731 AIR carboxylase PF00436 Single-strand binding protein family PF01040 UbiA prenyltransferase family PF01634 ATP phosphoribosyltransferase PF00132 Bacterial transferase hexapeptide (six repeats) PF12804 MobA-like NTP transferase domain PF03193 RsgA GTPase PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF02075 Crossover junction endodeoxyribonuclease RuvC PF00459 Inositol monophosphatase family PF00218 Indole-3-glycerol phosphate synthase PF00909 Ammonium Transporter Family PF00672 HAMP domain PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF00574 Clp protease PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00701 Dihydrodipicolinate synthetase family PF03239 Iron permease FTR1 family PF00753 Metallo-beta-lactamase superfamily PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF17770 Ribonuclease J C-terminal domain PF01121 Dephospho-CoA kinase PF00571 CBS domain PF02163 Peptidase family M50 PF01168 Alanine racemase, N-terminal domain PF08495 FIST N domain PF10442 FIST C domain PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF13237 4Fe-4S dicluster domain PF00146 NADH dehydrogenase PF01180 Dihydroorotate dehydrogenase PF02657 Fe-S metabolism associated domain PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00290 Tryptophan synthase alpha chain PF11940 Domain of unknown function (DUF3458) Ig-like fold PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF01433 Peptidase family M1 domain PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF00210 Ferritin-like domain PF02132 RecR protein PF13662 Toprim domain PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF09383 NIL domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF07963 Prokaryotic N-terminal methylation motif PF08334 Type II secretion system (T2SS), protein G PF02417 Chromate transporter PF00502 Phycobilisome protein PF12419 SNF2 Helicase protein PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF01694 Rhomboid family PF00155 Aminotransferase class I and II PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF04055 Radical SAM superfamily PF01106 NifU-like domain PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF14251 Domain of unknown function (DUF4346) PF00977 Histidine biosynthesis protein PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01241 Photosystem I psaG / psaK PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF00696 Amino acid kinase family PF13840 ACT domain PF01432 Peptidase family M3 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF17810 Arginine decarboxylase helical bundle domain PF17944 Arginine decarboxylase C-terminal helical extension PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF02445 Quinolinate synthetase A protein PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00330 Aconitase family (aconitate hydratase) PF06434 Aconitate hydratase 2 N-terminus PF11791 Aconitate B N-terminal domain PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF01266 FAD dependent oxidoreductase PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF08501 Shikimate dehydrogenase substrate binding domain PF13393 Histidyl-tRNA synthetase PF00462 Glutaredoxin PF03881 Fructosamine kinase PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF01521 Iron-sulphur cluster biosynthesis PF00535 Glycosyl transferase family 2 PF12894 Anaphase-promoting complex subunit 4 WD40 domain PF00400 WD domain, G-beta repeat PF02915 Rubrerythrin PF18152 DAHP synthase ferredoxin-like domain PF00793 DAHP synthetase I family PF00731 AIR carboxylase PF02578 Multi-copper polyphenol oxidoreductase laccase PF04025 Domain of unknown function (DUF370) PF02469 Fasciclin domain PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PF00312 Ribosomal protein S15 PF00427 Phycobilisome Linker polypeptide PF01627 Hpt domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00330 Aconitase family (aconitate hydratase) PF03773 Predicted permease PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF09506 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) PF00005 ABC transporter PF17912 MalK OB fold domain PF09210 Domain of unknown function (DUF1957) PF03065 Glycosyl hydrolase family 57 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PF00148 Nitrogenase component 1 type Oxidoreductase PF00515 Tetratricopeptide repeat PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF03600 Citrate transporter PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF07688 KaiA C-terminal domain PF07689 KaiB domain PF06745 KaiC PF02794 RTX toxin acyltransferase family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF00502 Phycobilisome protein PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF02605 Photosystem I reaction centre subunit XI PF00796 Photosystem I reaction centre subunit VIII PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF03652 Holliday junction resolvase PF02541 Ppx/GppA phosphatase family PF01678 Diaminopimelate epimerase PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01207 Dihydrouridine synthase (Dus) PF13673 Acetyltransferase (GNAT) domain PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF05685 Putative restriction endonuclease PF00270 DEAD/DEAH box helicase PF08148 DSHCT (NUC185) domain PF00271 Helicase conserved C-terminal domain PF00920 Dehydratase family PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase PF09363 XFP C-terminal domain PF09364 XFP N-terminal domain PF01497 Periplasmic binding protein PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF00873 AcrB/AcrD/AcrF family PF01509 TruB family pseudouridylate synthase (N terminal domain) PF13419 Haloacid dehalogenase-like hydrolase PF00183 Hsp90 protein PF00483 Nucleotidyl transferase PF03702 Anhydro-N-acetylmuramic acid kinase PF03462 PCRF domain PF00472 RF-1 domain PF01975 Survival protein SurE PF00124 Photosynthetic reaction centre protein PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PF00355 Rieske [2Fe-2S] domain PF13614 AAA domain PF13807 G-rich domain on putative tyrosine kinase PF02706 Chain length determinant protein PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00764 Arginosuccinate synthase PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF00005 ABC transporter PF14524 Wzt C-terminal domain PF00005 ABC transporter PF14524 Wzt C-terminal domain PF01061 ABC-2 type transporter PF00268 Ribonucleotide reductase, small chain PF00696 Amino acid kinase family PF00027 Cyclic nucleotide-binding domain PF07885 Ion channel PF00154 recA bacterial DNA recombination protein PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF01475 Ferric uptake regulator family PF02633 Creatinine amidohydrolase PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF00069 Protein kinase domain PF01494 FAD binding domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF13409 Glutathione S-transferase, N-terminal domain PF01502 Phosphoribosyl-AMP cyclohydrolase PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF00348 Polyprenyl synthetase PF00483 Nucleotidyl transferase PF16363 GDP-mannose 4,6 dehydratase PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PF08421 Putative zinc binding domain PF08484 C-methyltransferase C-terminal domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF16363 GDP-mannose 4,6 dehydratase PF04989 Cephalosporin hydroxylase PF00535 Glycosyl transferase family 2 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01370 NAD dependent epimerase/dehydratase family PF16363 GDP-mannose 4,6 dehydratase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system PF00132 Bacterial transferase hexapeptide (six repeats) PF01266 FAD dependent oxidoreductase PF01062 Bestrophin, RFP-TM, chloride channel PF08442 ATP-grasp domain PF00549 CoA-ligase PF03741 Integral membrane protein TerC family PF01145 SPFH domain / Band 7 family PF15975 Flotillin PF00535 Glycosyl transferase family 2 PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF00909 Ammonium Transporter Family PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF01618 MotA/TolQ/ExbB proton channel family PF03912 Psb28 protein PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF01699 Sodium/calcium exchanger protein PF00815 Histidinol dehydrogenase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00953 Glycosyl transferase family 4 PF12706 Beta-lactamase superfamily domain PF00211 Adenylate and Guanylate cyclase catalytic domain PF00072 Response regulator receiver domain PF07859 alpha/beta hydrolase fold PF02492 CobW/HypB/UreG, nucleotide-binding domain PF03600 Citrate transporter PF02080 TrkA-C domain PF01370 NAD dependent epimerase/dehydratase family PF17792 ThiD2 family PF02581 Thiamine monophosphate synthase PF03437 BtpA family PF00849 RNA pseudouridylate synthase PF00999 Sodium/hydrogen exchanger family PF03040 CemA family PF13614 AAA domain PF00011 Hsp20/alpha crystallin family PF01578 Cytochrome C assembly protein PF01638 HxlR-like helix-turn-helix PF04055 Radical SAM superfamily PF01924 Hydrogenase formation hypA family PF04483 Protein of unknown function (DUF565) PF07465 Photosystem I protein M (PsaM) PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF04321 RmlD substrate binding domain PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF01850 PIN domain PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF01625 Peptide methionine sulfoxide reductase PF07995 Glucose / Sorbosone dehydrogenase PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF00501 AMP-binding enzyme PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF02416 mttA/Hcf106 family PF13476 AAA domain PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF01783 Ribosomal L32p protein family PF02514 CobN/Magnesium Chelatase PF11965 Domain of unknown function (DUF3479) PF02463 RecF/RecN/SMC N terminal domain PF03819 MazG nucleotide pyrophosphohydrolase domain PF00005 ABC transporter PF03459 TOBE domain PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF00583 Acetyltransferase (GNAT) family PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF01812 5-formyltetrahydrofolate cyclo-ligase family PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF13419 Haloacid dehalogenase-like hydrolase PF02342 TerD domain PF00282 Pyridoxal-dependent decarboxylase conserved domain PF00795 Carbon-nitrogen hydrolase PF01774 UreD urease accessory protein PF00132 Bacterial transferase hexapeptide (six repeats) PF06426 Serine acetyltransferase, N-terminal PF02511 Thymidylate synthase complementing protein PF02533 Photosystem II 4 kDa reaction centre component PF01722 BolA-like protein PF00462 Glutaredoxin PF02575 YbaB/EbfC DNA-binding family PF16363 GDP-mannose 4,6 dehydratase PF00815 Histidinol dehydrogenase PF00403 Heavy-metal-associated domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF01979 Amidohydrolase family PF00449 Urease alpha-subunit, N-terminal domain PF00805 Pentapeptide repeats (8 copies) PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF05163 DinB family PF00301 Rubredoxin PF14870 Photosynthesis system II assembly factor YCF48 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits PF02419 PsbL protein PF01788 PsbJ PF00696 Amino acid kinase family PF01472 PUA domain PF13847 Methyltransferase domain PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF06167 Glucose-regulated metallo-peptidase M90 PF01297 Zinc-uptake complex component A periplasmic PF00005 ABC transporter PF00950 ABC 3 transport family PF02562 PhoH-like protein PF09367 CpeS-like protein PF00427 Phycobilisome Linker polypeptide PF03808 Glycosyl transferase WecB/TagA/CpsF family PF00561 alpha/beta hydrolase fold PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00012 Hsp70 protein PF00464 Serine hydroxymethyltransferase PF00814 Glycoprotease family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01520 N-acetylmuramoyl-L-alanine amidase PF04122 Putative cell wall binding repeat 2 PF12697 Alpha/beta hydrolase family PF03793 PASTA domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF03109 ABC1 family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02567 Phenazine biosynthesis-like protein PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF00202 Aminotransferase class-III PF00756 Putative esterase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF17863 AAA lid domain PF01078 Magnesium chelatase, subunit ChlI PF01479 S4 domain PF00579 tRNA synthetases class I (W and Y) PF01479 S4 domain PF00579 tRNA synthetases class I (W and Y) PF03699 Uncharacterised protein family (UPF0182) PF00436 Single-strand binding protein family PF00924 Mechanosensitive ion channel PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01266 FAD dependent oxidoreductase PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF01209 ubiE/COQ5 methyltransferase family PF10502 Signal peptidase, peptidase S26 PF01654 Cytochrome bd terminal oxidase subunit I PF02322 Cytochrome bd terminal oxidase subunit II PF02390 Putative methyltransferase PF00871 Acetokinase family PF01738 Dienelactone hydrolase family PF00111 2Fe-2S iron-sulfur cluster binding domain PF00355 Rieske [2Fe-2S] domain PF06750 Bacterial Peptidase A24 N-terminal domain PF01478 Type IV leader peptidase family PF00773 RNB domain PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF01434 Peptidase family M41 PF07664 Ferrous iron transport protein B C terminus PF02421 Ferrous iron transport protein B PF07670 Nucleoside recognition PF02681 Divergent PAP2 family PF00440 Bacterial regulatory proteins, tetR family PF04055 Radical SAM superfamily PF05173 Dihydrodipicolinate reductase, C-terminus PF01113 Dihydrodipicolinate reductase, N-terminus PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF12826 Helix-hairpin-helix motif PF02563 Polysaccharide biosynthesis/export protein PF10531 SLBB domain PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF01383 CpcD/allophycocyanin linker domain PF01383 CpcD/allophycocyanin linker domain PF00427 Phycobilisome Linker polypeptide PF00502 Phycobilisome protein PF00502 Phycobilisome protein PF00069 Protein kinase domain PF00069 Protein kinase domain PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF01370 NAD dependent epimerase/dehydratase family PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF01551 Peptidase family M23 PF17092 Penicillin-binding protein OB-like domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF00361 Proton-conducting membrane transporter PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF13244 Domain of unknown function (DUF4040) PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00403 Heavy-metal-associated domain PF00698 Acyl transferase domain PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF04055 Radical SAM superfamily PF01467 Cytidylyltransferase-like PF00809 Pterin binding enzyme PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF17806 Sarcosine oxidase A3 domain PF17810 Arginine decarboxylase helical bundle domain PF17944 Arginine decarboxylase C-terminal helical extension PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00625 Guanylate kinase PF17876 Cold shock domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF08673 Phosphoserine phosphatase RsbU, N-terminal domain PF07228 Stage II sporulation protein E (SpoIIE) PF14698 Argininosuccinate lyase C-terminal PF00206 Lyase PF00293 NUDIX domain PF09297 NADH pyrophosphatase zinc ribbon domain PF00510 Cytochrome c oxidase subunit III PF00300 Histidine phosphatase superfamily (branch 1) PF00085 Thioredoxin PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF02492 CobW/HypB/UreG, nucleotide-binding domain PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PF00491 Arginase family PF00990 Diguanylate cyclase, GGDEF domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF09334 tRNA synthetases class I (M) PF03616 Sodium/glutamate symporter PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07689 KaiB domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF01925 Sulfite exporter TauE/SafE PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00550 Phosphopantetheine attachment site PF00210 Ferritin-like domain PF01386 Ribosomal L25p family PF00709 Adenylosuccinate synthetase PF01197 Ribosomal protein L31 PF03130 PBS lyase HEAT-like repeat PF00380 Ribosomal protein S9/S16 PF00572 Ribosomal protein L13 PF01416 tRNA pseudouridine synthase PF01196 Ribosomal protein L17 PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF00411 Ribosomal protein S11 PF00416 Ribosomal protein S13/S18 PF00444 Ribosomal protein L36 PF01176 Translation initiation factor 1A / IF-1 PF00344 SecY translocase PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF00347 Ribosomal protein L6 PF00410 Ribosomal protein S8 PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF00467 KOW motif PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF00238 Ribosomal protein L14p/L23e PF00366 Ribosomal protein S17 PF00831 Ribosomal L29 protein PF00252 Ribosomal protein L16p/L10e PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF00237 Ribosomal protein L22p/L17e PF00203 Ribosomal protein S19 PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF00276 Ribosomal protein L23 PF00573 Ribosomal protein L4/L1 family PF00297 Ribosomal protein L3 PF00210 Ferritin-like domain PF01145 SPFH domain / Band 7 family PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF00696 Amino acid kinase family PF01730 UreF PF00005 ABC transporter PF10150 Ribonuclease E/G family PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF01026 TatD related DNase PF01649 Ribosomal protein S20 PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF01351 Ribonuclease HII PF06470 SMC proteins Flexible Hinge Domain PF02463 RecF/RecN/SMC N terminal domain PF01636 Phosphotransferase enzyme family PF02481 DNA recombination-mediator protein A PF17782 DprA winged helix domain PF01906 Putative heavy-metal-binding PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF01119 DNA mismatch repair protein, C-terminal domain PF08676 MutL C terminal dimerisation domain PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF12826 Helix-hairpin-helix motif PF00293 NUDIX domain PF02653 Branched-chain amino acid transport system / permease component PF00528 Binding-protein-dependent transport system inner membrane component PF13180 PDZ domain PF00596 Class II Aldolase and Adducin N-terminal domain PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF02514 CobN/Magnesium Chelatase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01220 Dehydroquinase class II PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF10502 Signal peptidase, peptidase S26 PF01938 TRAM domain PF05958 tRNA (Uracil-5-)-methyltransferase PF00291 Pyridoxal-phosphate dependent enzyme PF00585 C-terminal regulatory domain of Threonine dehydratase PF04472 Cell division protein SepF PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF00166 Chaperonin 10 Kd subunit PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF00118 TCP-1/cpn60 chaperonin family PF00293 NUDIX domain PF01264 Chorismate synthase PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF00466 Ribosomal protein L10 PF00687 Ribosomal protein L1p/L10e family PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF00467 KOW motif PF02357 Transcription termination factor nusG PF00571 CBS domain PF00291 Pyridoxal-phosphate dependent enzyme PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF01245 Ribosomal protein L19 PF16166 Chloroplast import apparatus Tic20-like PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) PF00561 alpha/beta hydrolase fold PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF02469 Fasciclin domain PF00361 Proton-conducting membrane transporter PF00223 Photosystem I psaA/psaB protein PF00223 Photosystem I psaA/psaB protein PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00364 Biotin-requiring enzyme PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00936 BMC domain PF00936 BMC domain PF02595 Glycerate kinase family PF00291 Pyridoxal-phosphate dependent enzyme PF07728 AAA domain (dynein-related subfamily) PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF00155 Aminotransferase class I and II PF00216 Bacterial DNA-binding protein PF00398 Ribosomal RNA adenine dimethylase PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF16124 RecQ zinc-binding PF01888 CbiD PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family PF02542 YgbB family PF04452 RNA methyltransferase PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF02416 mttA/Hcf106 family PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF01975 Survival protein SurE PF01327 Polypeptide deformylase PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF00005 ABC transporter PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF03330 Lytic transglycolase PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF01795 MraW methylase family PF11663 Toxin with endonuclease activity, of toxin-antitoxin system PF05194 UreE urease accessory protein, C-terminal domain PF02814 UreE urease accessory protein, N-terminal domain PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF02577 Bifunctional nuclease PF08338 Domain of unknown function (DUF1731) PF01370 NAD dependent epimerase/dehydratase family PF00005 ABC transporter PF08402 TOBE domain PF00069 Protein kinase domain PF13419 Haloacid dehalogenase-like hydrolase PF01259 SAICAR synthetase PF01103 Surface antigen PF07244 Surface antigen variable number repeat PF00009 Elongation factor Tu GTP binding domain PF16658 Class II release factor RF3, C-terminal domain PF01740 STAS domain PF00916 Sulfate permease family PF00582 Universal stress protein family PF01593 Flavin containing amine oxidoreductase PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF00148 Nitrogenase component 1 type Oxidoreductase PF08369 Proto-chlorophyllide reductase 57 kD subunit PF01230 HIT domain PF07969 Amidohydrolase family PF00561 alpha/beta hydrolase fold PF11378 Protein of unknown function (DUF3181) PF00462 Glutaredoxin PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF00378 Enoyl-CoA hydratase/isomerase PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF02233 NAD(P) transhydrogenase beta subunit PF01523 Putative modulator of DNA gyrase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF12169 DNA polymerase III subunits gamma and tau domain III PF12169 DNA polymerase III subunits gamma and tau domain III PF00190 Cupin PF00069 Protein kinase domain PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF10141 Single-strand DNA-specific exonuclease, C terminal domain PF00266 Aminotransferase class-V PF00294 pfkB family carbohydrate kinase PF13419 Haloacid dehalogenase-like hydrolase PF08331 Domain of unknown function (DUF1730) PF00885 6,7-dimethyl-8-ribityllumazine synthase PF01737 YCF9 PF01435 Peptidase family M48 PF00575 S1 RNA binding domain PF02463 RecF/RecN/SMC N terminal domain PF00391 PEP-utilising enzyme, mobile domain PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF03976 Polyphosphate kinase 2 (PPK2) PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF02632 BioY family PF01252 Signal peptidase (SPase) II