locus-tag class description SYN_00001 PF02629 CoA binding domain SYN_00001 PF00549 CoA-ligase SYN_00005 PF00350 Dynamin family SYN_00007 PF00270 DEAD/DEAH box helicase SYN_00007 PF17191 RecG wedge domain SYN_00007 PF13749 Putative ATP-dependent DNA helicase recG C-terminal SYN_00014 PF02556 Preprotein translocase subunit SecB SYN_00016 PF15723 Motility quorum-sensing regulator, toxin of MqsA SYN_00017 PF00176 SNF2 family N-terminal domain SYN_00017 PF00271 Helicase conserved C-terminal domain SYN_00019 PF00313 'Cold-shock' DNA-binding domain SYN_00021 PF00465 Iron-containing alcohol dehydrogenase SYN_00022 PF12704 MacB-like periplasmic core domain SYN_00022 PF00005 ABC transporter SYN_00022 PF02687 FtsX-like permease family SYN_00023 PF02687 FtsX-like permease family SYN_00023 PF12704 MacB-like periplasmic core domain SYN_00023 PF00005 ABC transporter SYN_00024 PF00005 ABC transporter SYN_00025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_00026 PF01556 DnaJ C terminal domain SYN_00026 PF00684 DnaJ central domain SYN_00026 PF00226 DnaJ domain SYN_00027 PF00118 TCP-1/cpn60 chaperonin family SYN_00028 PF00166 Chaperonin 10 Kd subunit SYN_00029 PF00011 Hsp20/alpha crystallin family SYN_00030 PF00011 Hsp20/alpha crystallin family SYN_00034 PF00072 Response regulator receiver domain SYN_00034 PF01627 Hpt domain SYN_00034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00034 PF01584 CheW-like domain SYN_00036 PF13439 Glycosyltransferase Family 4 SYN_00036 PF00534 Glycosyl transferases group 1 SYN_00038 PF01702 Queuine tRNA-ribosyltransferase SYN_00039 PF02547 Queuosine biosynthesis protein SYN_00041 PF03819 MazG nucleotide pyrophosphohydrolase domain SYN_00042 PF02146 Sir2 family SYN_00045 PF00085 Thioredoxin SYN_00047 PF01048 Phosphorylase superfamily SYN_00054 PF01451 Low molecular weight phosphotyrosine protein phosphatase SYN_00056 PF12849 PBP superfamily domain SYN_00057 PF00528 Binding-protein-dependent transport system inner membrane component SYN_00058 PF00528 Binding-protein-dependent transport system inner membrane component SYN_00059 PF00005 ABC transporter SYN_00060 PF01895 PhoU domain SYN_00061 PF00512 His Kinase A (phospho-acceptor) domain SYN_00061 PF00989 PAS fold SYN_00061 PF16736 Single Cache-like SYN_00061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00062 PF00166 Chaperonin 10 Kd subunit SYN_00063 PF00623 RNA polymerase Rpb1, domain 2 SYN_00063 PF04983 RNA polymerase Rpb1, domain 3 SYN_00063 PF05000 RNA polymerase Rpb1, domain 4 SYN_00063 PF04998 RNA polymerase Rpb1, domain 5 SYN_00063 PF04997 RNA polymerase Rpb1, domain 1 SYN_00064 PF04563 RNA polymerase beta subunit SYN_00064 PF04561 RNA polymerase Rpb2, domain 2 SYN_00064 PF04565 RNA polymerase Rpb2, domain 3 SYN_00064 PF00562 RNA polymerase Rpb2, domain 6 SYN_00064 PF10385 RNA polymerase beta subunit external 1 domain SYN_00064 PF04560 RNA polymerase Rpb2, domain 7 SYN_00066 PF00542 Ribosomal protein L7/L12 C-terminal domain SYN_00066 PF16320 Ribosomal protein L7/L12 dimerisation domain SYN_00067 PF00466 Ribosomal protein L10 SYN_00068 PF00687 Ribosomal protein L1p/L10e family SYN_00069 PF00298 Ribosomal protein L11, RNA binding domain SYN_00069 PF03946 Ribosomal protein L11, N-terminal domain SYN_00070 PF00467 KOW motif SYN_00070 PF02357 Transcription termination factor nusG SYN_00072 PF00471 Ribosomal protein L33 SYN_00073 PF01871 AMMECR1 SYN_00074 PF01875 Memo-like protein SYN_00075 PF01406 tRNA synthetases class I (C) catalytic domain SYN_00075 PF09190 DALR domain SYN_00079 PF08402 TOBE domain SYN_00079 PF00005 ABC transporter SYN_00081 PF10609 NUBPL iron-transfer P-loop NTPase SYN_00082 PF01925 Sulfite exporter TauE/SafE SYN_00083 PF07687 Peptidase dimerisation domain SYN_00083 PF01546 Peptidase family M20/M25/M40 SYN_00084 PF00258 Flavodoxin SYN_00088 PF00180 Isocitrate/isopropylmalate dehydrogenase SYN_00090 PF00682 HMGL-like SYN_00090 PF08502 LeuA allosteric (dimerisation) domain SYN_00091 PF00330 Aconitase family (aconitate hydratase) SYN_00092 PF00694 Aconitase C-terminal domain SYN_00093 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SYN_00093 PF01137 RNA 3'-terminal phosphate cyclase SYN_00099 PF01966 HD domain SYN_00099 PF00072 Response regulator receiver domain SYN_00100 PF13673 Acetyltransferase (GNAT) domain SYN_00100 PF00583 Acetyltransferase (GNAT) family SYN_00101 PF03073 TspO/MBR family SYN_00102 PF02403 Seryl-tRNA synthetase N-terminal domain SYN_00102 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SYN_00104 PF03023 Lipid II flippase MurJ SYN_00105 PF02594 Uncharacterised ACR, YggU family COG1872 SYN_00106 PF02325 YGGT family SYN_00107 PF01259 SAICAR synthetase SYN_00110 PF00226 DnaJ domain SYN_00110 PF00684 DnaJ central domain SYN_00110 PF01556 DnaJ C terminal domain SYN_00111 PF07883 Cupin domain SYN_00112 PF08448 PAS fold SYN_00112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00112 PF13426 PAS domain SYN_00112 PF00512 His Kinase A (phospho-acceptor) domain SYN_00112 PF00072 Response regulator receiver domain SYN_00113 PF01548 Transposase SYN_00113 PF02371 Transposase IS116/IS110/IS902 family SYN_00115 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SYN_00117 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_00117 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_00117 PF01610 Transposase SYN_00121 PF02899 Phage integrase, N-terminal SAM-like domain SYN_00121 PF00589 Phage integrase family SYN_00122 PF00709 Adenylosuccinate synthetase SYN_00123 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SYN_00123 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SYN_00123 PF01842 ACT domain SYN_00124 PF00266 Aminotransferase class-V SYN_00125 PF00437 Type II/IV secretion system protein SYN_00126 PF00437 Type II/IV secretion system protein SYN_00133 PF03279 Bacterial lipid A biosynthesis acyltransferase SYN_00137 PF03966 Trm112p-like protein SYN_00140 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SYN_00140 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SYN_00143 PF00581 Rhodanese-like domain SYN_00145 PF00581 Rhodanese-like domain SYN_00149 PF05140 ResB-like family SYN_00150 PF01578 Cytochrome C assembly protein SYN_00151 PF13237 4Fe-4S dicluster domain SYN_00152 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_00152 PF00037 4Fe-4S binding domain SYN_00152 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SYN_00154 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_00155 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SYN_00155 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SYN_00158 PF05681 Fumarate hydratase (Fumerase) SYN_00158 PF05683 Fumarase C-terminus SYN_00162 PF02575 YbaB/EbfC DNA-binding family SYN_00163 PF12169 DNA polymerase III subunits gamma and tau domain III SYN_00164 PF14437 MafB19-like deaminase SYN_00166 PF00753 Metallo-beta-lactamase superfamily SYN_00166 PF10996 Beta-Casp domain SYN_00166 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SYN_00167 PF01926 50S ribosome-binding GTPase SYN_00167 PF06071 Protein of unknown function (DUF933) SYN_00168 PF00155 Aminotransferase class I and II SYN_00169 PF01678 Diaminopimelate epimerase SYN_00173 PF00072 Response regulator receiver domain SYN_00174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00174 PF00512 His Kinase A (phospho-acceptor) domain SYN_00174 PF00072 Response regulator receiver domain SYN_00174 PF08448 PAS fold SYN_00174 PF13188 PAS domain SYN_00176 PF02219 Methylenetetrahydrofolate reductase SYN_00176 PF02574 Homocysteine S-methyltransferase SYN_00178 PF00270 DEAD/DEAH box helicase SYN_00178 PF00271 Helicase conserved C-terminal domain SYN_00182 PF04055 Radical SAM superfamily SYN_00182 PF12544 Lysine-2,3-aminomutase SYN_00183 PF01132 Elongation factor P (EF-P) OB domain SYN_00183 PF09285 Elongation factor P, C-terminal SYN_00183 PF08207 Elongation factor P (EF-P) KOW-like domain SYN_00185 PF01618 MotA/TolQ/ExbB proton channel family SYN_00186 PF02472 Biopolymer transport protein ExbD/TolR SYN_00188 PF07676 WD40-like Beta Propeller Repeat SYN_00188 PF04052 TolB amino-terminal domain SYN_00189 PF00691 OmpA family SYN_00193 PF04748 Divergent polysaccharide deacetylase SYN_00194 PF13180 PDZ domain SYN_00194 PF03572 Peptidase family S41 SYN_00197 PF02646 RmuC family SYN_00198 PF00691 OmpA family SYN_00198 PF05736 OprF membrane domain SYN_00200 PF13476 AAA domain SYN_00201 PF12320 Type 5 capsule protein repressor C-terminal domain SYN_00201 PF00149 Calcineurin-like phosphoesterase SYN_00204 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SYN_00204 PF06827 Zinc finger found in FPG and IleRS SYN_00204 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SYN_00206 PF01384 Phosphate transporter family SYN_00207 PF01594 AI-2E family transporter SYN_00208 PF02361 Cobalt transport protein SYN_00209 PF00005 ABC transporter SYN_00210 PF02632 BioY family SYN_00211 PF08279 HTH domain SYN_00211 PF03099 Biotin/lipoate A/B protein ligase family SYN_00211 PF02237 Biotin protein ligase C terminal domain SYN_00212 PF06968 Biotin and Thiamin Synthesis associated domain SYN_00212 PF04055 Radical SAM superfamily SYN_00216 PF00005 ABC transporter SYN_00217 PF01032 FecCD transport family SYN_00221 PF01170 Putative RNA methylase family UPF0020 SYN_00221 PF02926 THUMP domain SYN_00221 PF10672 S-adenosylmethionine-dependent methyltransferase SYN_00222 PF01177 Asp/Glu/Hydantoin racemase SYN_00225 PF01545 Cation efflux family SYN_00225 PF16916 Dimerisation domain of Zinc Transporter SYN_00226 PF00072 Response regulator receiver domain SYN_00226 PF00512 His Kinase A (phospho-acceptor) domain SYN_00226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00226 PF00672 HAMP domain SYN_00226 PF01627 Hpt domain SYN_00226 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SYN_00229 PF01740 STAS domain SYN_00230 PF00072 Response regulator receiver domain SYN_00231 PF00343 Carbohydrate phosphorylase SYN_00232 PF00572 Ribosomal protein L13 SYN_00233 PF00380 Ribosomal protein S9/S16 SYN_00234 PF01118 Semialdehyde dehydrogenase, NAD binding domain SYN_00234 PF02774 Semialdehyde dehydrogenase, dimerisation domain SYN_00240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_00241 PF00005 ABC transporter SYN_00242 PF00005 ABC transporter SYN_00245 PF00872 Transposase, Mutator family SYN_00248 PF00325 Bacterial regulatory proteins, crp family SYN_00248 PF00027 Cyclic nucleotide-binding domain SYN_00250 PF00535 Glycosyl transferase family 2 SYN_00253 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) SYN_00259 PF02754 Cysteine-rich domain SYN_00259 PF13183 4Fe-4S dicluster domain SYN_00261 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SYN_00261 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SYN_00265 PF00171 Aldehyde dehydrogenase family SYN_00266 PF00994 Probable molybdopterin binding domain SYN_00266 PF03453 MoeA N-terminal region (domain I and II) SYN_00266 PF03454 MoeA C-terminal region (domain IV) SYN_00267 PF03453 MoeA N-terminal region (domain I and II) SYN_00267 PF00994 Probable molybdopterin binding domain SYN_00267 PF03454 MoeA C-terminal region (domain IV) SYN_00268 PF03459 TOBE domain SYN_00270 PF00528 Binding-protein-dependent transport system inner membrane component SYN_00271 PF00005 ABC transporter SYN_00271 PF03459 TOBE domain SYN_00272 PF03454 MoeA C-terminal region (domain IV) SYN_00272 PF00994 Probable molybdopterin binding domain SYN_00272 PF03453 MoeA N-terminal region (domain I and II) SYN_00275 PF04055 Radical SAM superfamily SYN_00275 PF06463 Molybdenum Cofactor Synthesis C SYN_00276 PF02979 Nitrile hydratase, alpha chain SYN_00283 PF00005 ABC transporter SYN_00285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_00286 PF02811 PHP domain SYN_00286 PF14716 Helix-hairpin-helix domain SYN_00286 PF14791 DNA polymerase beta thumb SYN_00287 PF10576 Iron-sulfur binding domain of endonuclease III SYN_00287 PF00633 Helix-hairpin-helix motif SYN_00287 PF00730 HhH-GPD superfamily base excision DNA repair protein SYN_00288 PF04216 Protein involved in formate dehydrogenase formation SYN_00289 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SYN_00291 PF00075 RNase H SYN_00294 PF01435 Peptidase family M48 SYN_00295 PF00128 Alpha amylase, catalytic domain SYN_00295 PF16657 Maltogenic Amylase, C-terminal domain SYN_00297 PF01209 ubiE/COQ5 methyltransferase family SYN_00298 PF00343 Carbohydrate phosphorylase SYN_00298 PF11897 Protein of unknown function (DUF3417) SYN_00302 PF02581 Thiamine monophosphate synthase SYN_00303 PF02110 Hydroxyethylthiazole kinase family SYN_00304 PF00905 Penicillin binding protein transpeptidase domain SYN_00304 PF17092 Penicillin-binding protein OB-like domain SYN_00304 PF00912 Transglycosylase SYN_00305 PF00902 Sec-independent protein translocase protein (TatC) SYN_00306 PF02416 mttA/Hcf106 family SYN_00307 PF02686 Glu-tRNAGln amidotransferase C subunit SYN_00308 PF01425 Amidase SYN_00309 PF02637 GatB domain SYN_00309 PF02934 GatB/GatE catalytic domain SYN_00310 PF01008 Initiation factor 2 subunit family SYN_00311 PF13419 Haloacid dehalogenase-like hydrolase SYN_00314 PF00582 Universal stress protein family SYN_00316 PF02913 FAD linked oxidases, C-terminal domain SYN_00316 PF01565 FAD binding domain SYN_00318 PF00753 Metallo-beta-lactamase superfamily SYN_00323 PF00571 CBS domain SYN_00323 PF02163 Peptidase family M50 SYN_00326 PF07687 Peptidase dimerisation domain SYN_00326 PF01546 Peptidase family M20/M25/M40 SYN_00327 PF00583 Acetyltransferase (GNAT) family SYN_00329 PF02861 Clp amino terminal domain, pathogenicity island component SYN_00329 PF00004 ATPase family associated with various cellular activities (AAA) SYN_00329 PF10431 C-terminal, D2-small domain, of ClpB protein SYN_00329 PF07724 AAA domain (Cdc48 subfamily) SYN_00329 PF17871 AAA lid domain SYN_00331 PF13673 Acetyltransferase (GNAT) domain SYN_00331 PF13302 Acetyltransferase (GNAT) domain SYN_00331 PF00958 GMP synthase C terminal domain SYN_00331 PF00117 Glutamine amidotransferase class-I SYN_00331 PF03352 Methyladenine glycosylase SYN_00340 PF01758 Sodium Bile acid symporter family SYN_00347 PF01022 Bacterial regulatory protein, arsR family SYN_00348 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SYN_00352 PF13237 4Fe-4S dicluster domain SYN_00359 PF01726 LexA DNA binding domain SYN_00359 PF00717 Peptidase S24-like SYN_00362 PF09335 SNARE associated Golgi protein SYN_00366 PF00528 Binding-protein-dependent transport system inner membrane component SYN_00367 PF00005 ABC transporter SYN_00368 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SYN_00369 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SYN_00370 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SYN_00371 PF01869 BadF/BadG/BcrA/BcrD ATPase family SYN_00372 PF13847 Methyltransferase domain SYN_00381 PF04055 Radical SAM superfamily SYN_00381 PF06463 Molybdenum Cofactor Synthesis C SYN_00382 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SYN_00382 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SYN_00383 PF00271 Helicase conserved C-terminal domain SYN_00383 PF09369 Domain of unknown function (DUF1998) SYN_00383 PF00270 DEAD/DEAH box helicase SYN_00387 PF01384 Phosphate transporter family SYN_00390 PF01548 Transposase SYN_00390 PF02371 Transposase IS116/IS110/IS902 family SYN_00391 PF13407 Periplasmic binding protein domain SYN_00393 PF01541 GIY-YIG catalytic domain SYN_00394 PF11756 Nitrous oxide-stimulated promoter SYN_00397 PF01695 IstB-like ATP binding protein SYN_00398 PF00872 Transposase, Mutator family SYN_00410 PF00005 ABC transporter SYN_00411 PF02405 Permease MlaE SYN_00412 PF01820 D-ala D-ala ligase N-terminus SYN_00412 PF07478 D-ala D-ala ligase C-terminus SYN_00414 PF03739 Lipopolysaccharide export system permease LptF/LptG SYN_00416 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SYN_00416 PF05221 S-adenosyl-L-homocysteine hydrolase SYN_00419 PF02261 Aspartate decarboxylase SYN_00420 PF02569 Pantoate-beta-alanine ligase SYN_00421 PF00398 Ribosomal RNA adenine dimethylase SYN_00423 PF00814 Glycoprotease family SYN_00424 PF00890 FAD binding domain SYN_00424 PF02910 Fumarate reductase flavoprotein C-term SYN_00426 PF00206 Lyase SYN_00426 PF10397 Adenylosuccinate lyase C-terminus SYN_00427 PF00270 DEAD/DEAH box helicase SYN_00427 PF08148 DSHCT (NUC185) domain SYN_00427 PF00271 Helicase conserved C-terminal domain SYN_00429 PF03372 Endonuclease/Exonuclease/phosphatase family SYN_00430 PF01339 CheB methylesterase SYN_00430 PF00072 Response regulator receiver domain SYN_00431 PF00072 Response regulator receiver domain SYN_00431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00431 PF01584 CheW-like domain SYN_00431 PF01627 Hpt domain SYN_00432 PF00672 HAMP domain SYN_00432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SYN_00432 PF02743 Cache domain SYN_00433 PF01584 CheW-like domain SYN_00434 PF01739 CheR methyltransferase, SAM binding domain SYN_00437 PF12327 FtsZ family, C-terminal domain SYN_00437 PF00091 Tubulin/FtsZ family, GTPase domain SYN_00438 PF00899 ThiF family SYN_00438 PF00581 Rhodanese-like domain SYN_00439 PF04055 Radical SAM superfamily SYN_00439 PF06968 Biotin and Thiamin Synthesis associated domain SYN_00440 PF05690 Thiazole biosynthesis protein ThiG SYN_00442 PF02581 Thiamine monophosphate synthase SYN_00446 PF00291 Pyridoxal-phosphate dependent enzyme SYN_00448 PF00263 Bacterial type II and III secretion system protein SYN_00448 PF03958 Bacterial type II/III secretion system short domain SYN_00449 PF01551 Peptidase family M23 SYN_00449 PF10145 Phage-related minor tail protein SYN_00449 PF01464 Transglycosylase SLT domain SYN_00457 PF00482 Type II secretion system (T2SS), protein F SYN_00458 PF00437 Type II/IV secretion system protein SYN_00458 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SYN_00459 PF08334 Type II secretion system (T2SS), protein G SYN_00459 PF07963 Prokaryotic N-terminal methylation motif SYN_00461 PF07837 Formiminotransferase domain, N-terminal subdomain SYN_00461 PF02971 Formiminotransferase domain SYN_00463 PF01209 ubiE/COQ5 methyltransferase family SYN_00465 PF02881 SRP54-type protein, helical bundle domain SYN_00465 PF00448 SRP54-type protein, GTPase domain SYN_00466 PF12848 ABC transporter SYN_00466 PF16326 ABC transporter C-terminal domain SYN_00466 PF00005 ABC transporter SYN_00468 PF02690 Na+/Pi-cotransporter SYN_00469 PF02915 Rubrerythrin SYN_00471 PF01380 SIS domain SYN_00471 PF00571 CBS domain SYN_00473 PF01894 Uncharacterised protein family UPF0047 SYN_00474 PF00731 AIR carboxylase SYN_00475 PF02540 NAD synthase SYN_00476 PF01969 Protein of unknown function DUF111 SYN_00477 PF08753 NikR C terminal nickel binding domain SYN_00477 PF01402 Ribbon-helix-helix protein, copG family SYN_00478 PF00795 Carbon-nitrogen hydrolase SYN_00480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SYN_00480 PF02770 Acyl-CoA dehydrogenase, middle domain SYN_00480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SYN_00481 PF01039 Carboxyl transferase domain SYN_00482 PF12804 MobA-like NTP transferase domain SYN_00483 PF13307 Helicase C-terminal domain SYN_00483 PF06733 DEAD_2 SYN_00494 PF02384 N-6 DNA Methylase SYN_00497 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SYN_00497 PF11867 Domain of unknown function (DUF3387) SYN_00497 PF18766 SWI2/SNF2 ATPase SYN_00511 PF00753 Metallo-beta-lactamase superfamily SYN_00511 PF00301 Rubredoxin SYN_00511 PF00258 Flavodoxin SYN_00514 PF03358 NADPH-dependent FMN reductase SYN_00515 PF09335 SNARE associated Golgi protein SYN_00517 PF03949 Malic enzyme, NAD binding domain SYN_00517 PF00390 Malic enzyme, N-terminal domain SYN_00521 PF00586 AIR synthase related protein, N-terminal domain SYN_00521 PF02769 AIR synthase related protein, C-terminal domain SYN_00521 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SYN_00525 PF11871 Domain of unknown function (DUF3391) SYN_00525 PF01966 HD domain SYN_00526 PF00149 Calcineurin-like phosphoesterase SYN_00527 PF17820 PDZ domain SYN_00527 PF13180 PDZ domain SYN_00530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SYN_00531 PF16363 GDP-mannose 4,6 dehydratase SYN_00532 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SYN_00532 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SYN_00532 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SYN_00533 PF01743 Poly A polymerase head domain SYN_00533 PF01966 HD domain SYN_00533 PF12627 Probable RNA and SrmB- binding site of polymerase A SYN_00534 PF00149 Calcineurin-like phosphoesterase SYN_00535 PF04011 LemA family SYN_00542 PF01272 Transcription elongation factor, GreA/GreB, C-term SYN_00542 PF03449 Transcription elongation factor, N-terminal SYN_00543 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SYN_00543 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SYN_00544 PF02874 ATP synthase alpha/beta family, beta-barrel domain SYN_00544 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_00545 PF00231 ATP synthase SYN_00546 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_00546 PF00306 ATP synthase alpha/beta chain, C terminal domain SYN_00546 PF02874 ATP synthase alpha/beta family, beta-barrel domain SYN_00547 PF00213 ATP synthase delta (OSCP) subunit SYN_00548 PF00430 ATP synthase B/B' CF(0) SYN_00549 PF00430 ATP synthase B/B' CF(0) SYN_00550 PF01098 Cell cycle protein SYN_00551 PF00905 Penicillin binding protein transpeptidase domain SYN_00558 PF00133 tRNA synthetases class I (I, L, M and V) SYN_00558 PF09334 tRNA synthetases class I (M) SYN_00558 PF01588 Putative tRNA binding domain SYN_00559 PF04468 PSP1 C-terminal conserved region SYN_00561 PF11799 impB/mucB/samB family C-terminal domain SYN_00561 PF11798 IMS family HHH motif SYN_00561 PF00817 impB/mucB/samB family SYN_00564 PF01370 NAD dependent epimerase/dehydratase family SYN_00565 PF00155 Aminotransferase class I and II SYN_00567 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_00567 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_00567 PF01610 Transposase SYN_00568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00568 PF00512 His Kinase A (phospho-acceptor) domain SYN_00568 PF00072 Response regulator receiver domain SYN_00568 PF08448 PAS fold SYN_00568 PF13188 PAS domain SYN_00570 PF00202 Aminotransferase class-III SYN_00571 PF01168 Alanine racemase, N-terminal domain SYN_00572 PF02545 Maf-like protein SYN_00574 PF13545 Crp-like helix-turn-helix domain SYN_00574 PF00027 Cyclic nucleotide-binding domain SYN_00575 PF01478 Type IV leader peptidase family SYN_00575 PF06750 Bacterial Peptidase A24 N-terminal domain SYN_00576 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SYN_00578 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SYN_00578 PF01872 RibD C-terminal domain SYN_00581 PF03462 PCRF domain SYN_00581 PF00472 RF-1 domain SYN_00583 PF00202 Aminotransferase class-III SYN_00584 PF16363 GDP-mannose 4,6 dehydratase SYN_00585 PF01370 NAD dependent epimerase/dehydratase family SYN_00588 PF00119 ATP synthase A chain SYN_00589 PF01926 50S ribosome-binding GTPase SYN_00590 PF00158 Sigma-54 interaction domain SYN_00590 PF02954 Bacterial regulatory protein, Fis family SYN_00590 PF00072 Response regulator receiver domain SYN_00591 PF00578 AhpC/TSA family SYN_00595 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SYN_00597 PF01455 HupF/HypC family SYN_00598 PF01924 Hydrogenase formation hypA family SYN_00599 PF02492 CobW/HypB/UreG, nucleotide-binding domain SYN_00600 PF17788 HypF Kae1-like domain SYN_00600 PF00708 Acylphosphatase SYN_00600 PF01300 Telomere recombination SYN_00600 PF07503 HypF finger SYN_00601 PF02769 AIR synthase related protein, C-terminal domain SYN_00601 PF00586 AIR synthase related protein, N-terminal domain SYN_00602 PF01568 Molydopterin dinucleotide binding domain SYN_00602 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_00602 PF00384 Molybdopterin oxidoreductase SYN_00603 PF01568 Molydopterin dinucleotide binding domain SYN_00603 PF00384 Molybdopterin oxidoreductase SYN_00603 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_00604 PF09163 Formate dehydrogenase N, transmembrane SYN_00604 PF13247 4Fe-4S dicluster domain SYN_00606 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SYN_00606 PF13247 4Fe-4S dicluster domain SYN_00606 PF07992 Pyridine nucleotide-disulphide oxidoreductase SYN_00607 PF00970 Oxidoreductase FAD-binding domain SYN_00607 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SYN_00607 PF00175 Oxidoreductase NAD-binding domain SYN_00608 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SYN_00609 PF00271 Helicase conserved C-terminal domain SYN_00609 PF17757 UvrB interaction domain SYN_00609 PF12344 Ultra-violet resistance protein B SYN_00609 PF04851 Type III restriction enzyme, res subunit SYN_00609 PF02151 UvrB/uvrC motif SYN_00610 PF00005 ABC transporter SYN_00611 PF12146 Serine aminopeptidase, S33 SYN_00615 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_00619 PF02811 PHP domain SYN_00621 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase SYN_00621 PF01676 Metalloenzyme superfamily SYN_00622 PF00982 Glycosyltransferase family 20 SYN_00626 PF01494 FAD binding domain SYN_00628 PF04060 Putative Fe-S cluster SYN_00628 PF13187 4Fe-4S dicluster domain SYN_00629 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_00629 PF01568 Molydopterin dinucleotide binding domain SYN_00629 PF00384 Molybdopterin oxidoreductase SYN_00630 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SYN_00630 PF00384 Molybdopterin oxidoreductase SYN_00630 PF01568 Molydopterin dinucleotide binding domain SYN_00630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_00630 PF12838 4Fe-4S dicluster domain SYN_00631 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_00631 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SYN_00631 PF10531 SLBB domain SYN_00633 PF13247 4Fe-4S dicluster domain SYN_00633 PF09163 Formate dehydrogenase N, transmembrane SYN_00634 PF01568 Molydopterin dinucleotide binding domain SYN_00634 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_00634 PF00384 Molybdopterin oxidoreductase SYN_00635 PF01568 Molydopterin dinucleotide binding domain SYN_00635 PF00384 Molybdopterin oxidoreductase SYN_00635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_00639 PF04545 Sigma-70, region 4 SYN_00639 PF00140 Sigma-70 factor, region 1.2 SYN_00639 PF04542 Sigma-70 region 2 SYN_00640 PF03796 DnaB-like helicase C terminal domain SYN_00640 PF00772 DnaB-like helicase N terminal domain SYN_00641 PF01281 Ribosomal protein L9, N-terminal domain SYN_00641 PF03948 Ribosomal protein L9, C-terminal domain SYN_00643 PF01084 Ribosomal protein S18 SYN_00646 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_00646 PF13380 CoA binding domain SYN_00646 PF00583 Acetyltransferase (GNAT) family SYN_00652 PF01047 MarR family SYN_00654 PF01515 Phosphate acetyl/butaryl transferase SYN_00664 PF00282 Pyridoxal-dependent decarboxylase conserved domain SYN_00665 PF00872 Transposase, Mutator family SYN_00666 PF08212 Lipocalin-like domain SYN_00667 PF13649 Methyltransferase domain SYN_00674 PF05872 Bacterial protein of unknown function (DUF853) SYN_00687 PF03423 Carbohydrate binding domain (family 25) SYN_00687 PF01373 Glycosyl hydrolase family 14 SYN_00687 PF00128 Alpha amylase, catalytic domain SYN_00688 PF04228 Putative neutral zinc metallopeptidase SYN_00689 PF09997 Predicted membrane protein (DUF2238) SYN_00691 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_00692 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SYN_00692 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SYN_00693 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SYN_00695 PF00589 Phage integrase family SYN_00705 PF00027 Cyclic nucleotide-binding domain SYN_00705 PF13545 Crp-like helix-turn-helix domain SYN_00706 PF01678 Diaminopimelate epimerase SYN_00716 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SYN_00716 PF09297 NADH pyrophosphatase zinc ribbon domain SYN_00716 PF00293 NUDIX domain SYN_00718 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SYN_00719 PF02583 Metal-sensitive transcriptional repressor SYN_00720 PF13247 4Fe-4S dicluster domain SYN_00723 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_00723 PF01610 Transposase SYN_00723 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_00725 PF00684 DnaJ central domain SYN_00725 PF01556 DnaJ C terminal domain SYN_00725 PF00226 DnaJ domain SYN_00729 PF00890 FAD binding domain SYN_00729 PF02910 Fumarate reductase flavoprotein C-term SYN_00730 PF00849 RNA pseudouridylate synthase SYN_00740 PF00850 Histone deacetylase domain SYN_00741 PF13559 Domain of unknown function (DUF4129) SYN_00741 PF11992 Domain of unknown function (DUF3488) SYN_00741 PF01841 Transglutaminase-like superfamily SYN_00744 PF07726 ATPase family associated with various cellular activities (AAA) SYN_00744 PF17863 AAA lid domain SYN_00745 PF00005 ABC transporter SYN_00748 PF00583 Acetyltransferase (GNAT) family SYN_00748 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_00748 PF13380 CoA binding domain SYN_00752 PF01985 CRS1 / YhbY (CRM) domain SYN_00756 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SYN_00757 PF04546 Sigma-70, non-essential region SYN_00757 PF04539 Sigma-70 region 3 SYN_00757 PF04545 Sigma-70, region 4 SYN_00757 PF00140 Sigma-70 factor, region 1.2 SYN_00757 PF04542 Sigma-70 region 2 SYN_00757 PF03979 Sigma-70 factor, region 1.1 SYN_00758 PF10410 DnaB-helicase binding domain of primase SYN_00758 PF08275 DNA primase catalytic core, N-terminal domain SYN_00758 PF01807 CHC2 zinc finger SYN_00759 PF09424 Yqey-like protein SYN_00760 PF01230 HIT domain SYN_00761 PF00977 Histidine biosynthesis protein SYN_00765 PF00886 Ribosomal protein S16 SYN_00767 PF01782 RimM N-terminal domain SYN_00767 PF05239 PRC-barrel domain SYN_00768 PF01746 tRNA (Guanine-1)-methyltransferase SYN_00769 PF09936 SAM-dependent RNA methyltransferase SYN_00770 PF01245 Ribosomal protein L19 SYN_00771 PF01351 Ribonuclease HII SYN_00772 PF02021 Uncharacterised protein family UPF0102 SYN_00773 PF01061 ABC-2 type transporter SYN_00774 PF00005 ABC transporter SYN_00775 PF00072 Response regulator receiver domain SYN_00775 PF00196 Bacterial regulatory proteins, luxR family SYN_00776 PF13426 PAS domain SYN_00776 PF00989 PAS fold SYN_00776 PF00512 His Kinase A (phospho-acceptor) domain SYN_00776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00776 PF13493 Domain of unknown function (DUF4118) SYN_00776 PF08447 PAS fold SYN_00778 PF13401 AAA domain SYN_00778 PF01471 Putative peptidoglycan binding domain SYN_00779 PF13614 AAA domain SYN_00783 PF02190 ATP-dependent protease La (LON) substrate-binding domain SYN_00783 PF05362 Lon protease (S16) C-terminal proteolytic domain SYN_00783 PF00004 ATPase family associated with various cellular activities (AAA) SYN_00785 PF00005 ABC transporter SYN_00786 PF12399 Branched-chain amino acid ATP-binding cassette transporter SYN_00786 PF00005 ABC transporter SYN_00787 PF02653 Branched-chain amino acid transport system / permease component SYN_00787 PF11862 Domain of unknown function (DUF3382) SYN_00788 PF02653 Branched-chain amino acid transport system / permease component SYN_00789 PF13458 Periplasmic binding protein SYN_00791 PF01926 50S ribosome-binding GTPase SYN_00791 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SYN_00792 PF01926 50S ribosome-binding GTPase SYN_00792 PF07650 KH domain SYN_00794 PF13091 PLD-like domain SYN_00795 PF06969 HemN C-terminal domain SYN_00795 PF04055 Radical SAM superfamily SYN_00796 PF14622 Ribonuclease-III-like SYN_00796 PF00035 Double-stranded RNA binding motif SYN_00797 PF01938 TRAM domain SYN_00797 PF04055 Radical SAM superfamily SYN_00797 PF00919 Uncharacterized protein family UPF0004 SYN_00800 PF09383 NIL domain SYN_00800 PF00005 ABC transporter SYN_00803 PF09338 Glycine/sarcosine/betaine reductase component B subunits SYN_00804 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SYN_00806 PF04723 Glycine reductase complex selenoprotein A SYN_00812 PF05193 Peptidase M16 inactive domain SYN_00812 PF00675 Insulinase (Peptidase family M16) SYN_00812 PF08367 Peptidase M16C associated SYN_00814 PF14245 Type IV pilin PilA SYN_00814 PF07963 Prokaryotic N-terminal methylation motif SYN_00817 PF13439 Glycosyltransferase Family 4 SYN_00818 PF13439 Glycosyltransferase Family 4 SYN_00818 PF00534 Glycosyl transferases group 1 SYN_00819 PF00535 Glycosyl transferase family 2 SYN_00821 PF00535 Glycosyl transferase family 2 SYN_00821 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 SYN_00822 PF00535 Glycosyl transferase family 2 SYN_00824 PF00005 ABC transporter SYN_00826 PF13649 Methyltransferase domain SYN_00827 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SYN_00829 PF00535 Glycosyl transferase family 2 SYN_00833 PF11992 Domain of unknown function (DUF3488) SYN_00833 PF01841 Transglutaminase-like superfamily SYN_00833 PF13559 Domain of unknown function (DUF4129) SYN_00836 PF12849 PBP superfamily domain SYN_00837 PF12849 PBP superfamily domain SYN_00838 PF00528 Binding-protein-dependent transport system inner membrane component SYN_00839 PF08402 TOBE domain SYN_00839 PF00005 ABC transporter SYN_00842 PF00696 Amino acid kinase family SYN_00846 PF00939 Sodium:sulfate symporter transmembrane region SYN_00848 PF00009 Elongation factor Tu GTP binding domain SYN_00848 PF03144 Elongation factor Tu domain 2 SYN_00848 PF16658 Class II release factor RF3, C-terminal domain SYN_00851 PF02321 Outer membrane efflux protein SYN_00852 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_00853 PF12704 MacB-like periplasmic core domain SYN_00853 PF02687 FtsX-like permease family SYN_00853 PF00005 ABC transporter SYN_00854 PF12704 MacB-like periplasmic core domain SYN_00854 PF00005 ABC transporter SYN_00854 PF02687 FtsX-like permease family SYN_00856 PF00535 Glycosyl transferase family 2 SYN_00858 PF01522 Polysaccharide deacetylase SYN_00858 PF14883 Hypothetical glycosyl hydrolase family 13 SYN_00864 PF02254 TrkA-N domain SYN_00864 PF00999 Sodium/hydrogen exchanger family SYN_00868 PF00535 Glycosyl transferase family 2 SYN_00869 PF13660 Domain of unknown function (DUF4147) SYN_00869 PF05161 MOFRL family SYN_00872 PF00690 Cation transporter/ATPase, N-terminus SYN_00872 PF00689 Cation transporting ATPase, C-terminus SYN_00874 PF12706 Beta-lactamase superfamily domain SYN_00875 PF00072 Response regulator receiver domain SYN_00875 PF00486 Transcriptional regulatory protein, C terminal SYN_00878 PF11146 Protein of unknown function (DUF2905) SYN_00879 PF00343 Carbohydrate phosphorylase SYN_00879 PF11897 Protein of unknown function (DUF3417) SYN_00881 PF13579 Glycosyl transferase 4-like domain SYN_00881 PF00534 Glycosyl transferases group 1 SYN_00882 PF00072 Response regulator receiver domain SYN_00882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00882 PF13188 PAS domain SYN_00882 PF08448 PAS fold SYN_00882 PF00512 His Kinase A (phospho-acceptor) domain SYN_00885 PF00830 Ribosomal L28 family SYN_00886 PF00365 Phosphofructokinase SYN_00887 PF00365 Phosphofructokinase SYN_00888 PF00551 Formyl transferase SYN_00889 PF00586 AIR synthase related protein, N-terminal domain SYN_00889 PF02769 AIR synthase related protein, C-terminal domain SYN_00890 PF01842 ACT domain SYN_00890 PF00742 Homoserine dehydrogenase SYN_00890 PF03447 Homoserine dehydrogenase, NAD binding domain SYN_00891 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase SYN_00891 PF01676 Metalloenzyme superfamily SYN_00892 PF03061 Thioesterase superfamily SYN_00894 PF00684 DnaJ central domain SYN_00894 PF01556 DnaJ C terminal domain SYN_00894 PF00226 DnaJ domain SYN_00896 PF01336 OB-fold nucleic acid binding domain SYN_00896 PF07733 Bacterial DNA polymerase III alpha NTPase domain SYN_00896 PF14579 Helix-hairpin-helix motif SYN_00896 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SYN_00896 PF02811 PHP domain SYN_00897 PF00571 CBS domain SYN_00897 PF00478 IMP dehydrogenase / GMP reductase domain SYN_00899 PF02580 D-Tyr-tRNA(Tyr) deacylase SYN_00901 PF01725 Ham1 family SYN_00902 PF01138 3' exoribonuclease family, domain 1 SYN_00902 PF03725 3' exoribonuclease family, domain 2 SYN_00903 PF08239 Bacterial SH3 domain SYN_00903 PF01520 N-acetylmuramoyl-L-alanine amidase SYN_00904 PF04607 Region found in RelA / SpoT proteins SYN_00904 PF13291 ACT domain SYN_00904 PF02824 TGS domain SYN_00905 PF03129 Anticodon binding domain SYN_00905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SYN_00905 PF04073 Aminoacyl-tRNA editing domain SYN_00906 PF04551 GcpE protein SYN_00907 PF00156 Phosphoribosyl transferase domain SYN_00908 PF00155 Aminotransferase class I and II SYN_00909 PF01467 Cytidylyltransferase-like SYN_00911 PF01118 Semialdehyde dehydrogenase, NAD binding domain SYN_00911 PF02774 Semialdehyde dehydrogenase, dimerisation domain SYN_00912 PF01066 CDP-alcohol phosphatidyltransferase SYN_00913 PF02666 Phosphatidylserine decarboxylase SYN_00914 PF00814 Glycoprotease family SYN_00915 PF02163 Peptidase family M50 SYN_00915 PF17820 PDZ domain SYN_00916 PF13288 DXP reductoisomerase C-terminal domain SYN_00916 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SYN_00916 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SYN_00918 PF01255 Putative undecaprenyl diphosphate synthase SYN_00919 PF01765 Ribosome recycling factor SYN_00920 PF00696 Amino acid kinase family SYN_00921 PF07244 Surface antigen variable number repeat SYN_00921 PF01103 Surface antigen SYN_00922 PF00005 ABC transporter SYN_00923 PF02687 FtsX-like permease family SYN_00923 PF12704 MacB-like periplasmic core domain SYN_00924 PF01336 OB-fold nucleic acid binding domain SYN_00924 PF00152 tRNA synthetases class II (D, K and N) SYN_00925 PF00436 Single-strand binding protein family SYN_00926 PF02416 mttA/Hcf106 family SYN_00928 PF00459 Inositol monophosphatase family SYN_00929 PF08448 PAS fold SYN_00929 PF13188 PAS domain SYN_00929 PF00512 His Kinase A (phospho-acceptor) domain SYN_00929 PF00072 Response regulator receiver domain SYN_00929 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00933 PF13419 Haloacid dehalogenase-like hydrolase SYN_00934 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SYN_00934 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SYN_00935 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SYN_00935 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SYN_00938 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SYN_00938 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SYN_00938 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SYN_00938 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SYN_00941 PF03668 P-loop ATPase protein family SYN_00942 PF07475 HPr Serine kinase C-terminal domain SYN_00942 PF02603 HPr Serine kinase N terminus SYN_00943 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SYN_00944 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SYN_00944 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SYN_00945 PF00309 Sigma-54 factor, Activator interacting domain (AID) SYN_00945 PF04963 Sigma-54 factor, core binding domain SYN_00945 PF04552 Sigma-54, DNA binding domain SYN_00946 PF00005 ABC transporter SYN_00950 PF00793 DAHP synthetase I family SYN_00952 PF02899 Phage integrase, N-terminal SAM-like domain SYN_00952 PF00589 Phage integrase family SYN_00954 PF01297 Zinc-uptake complex component A periplasmic SYN_00954 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SYN_00955 PF00005 ABC transporter SYN_00956 PF00950 ABC 3 transport family SYN_00959 PF01618 MotA/TolQ/ExbB proton channel family SYN_00960 PF13677 Membrane MotB of proton-channel complex MotA/MotB SYN_00960 PF00691 OmpA family SYN_00962 PF00072 Response regulator receiver domain SYN_00963 PF01584 CheW-like domain SYN_00963 PF09078 CheY binding SYN_00963 PF02895 Signal transducing histidine kinase, homodimeric domain SYN_00963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_00963 PF01627 Hpt domain SYN_00964 PF00072 Response regulator receiver domain SYN_00964 PF01339 CheB methylesterase SYN_00965 PF03975 CheD chemotactic sensory transduction SYN_00969 PF03975 CheD chemotactic sensory transduction SYN_00970 PF01739 CheR methyltransferase, SAM binding domain SYN_00970 PF03705 CheR methyltransferase, all-alpha domain SYN_00971 PF00672 HAMP domain SYN_00971 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SYN_00971 PF02203 Tar ligand binding domain homologue SYN_00973 PF02954 Bacterial regulatory protein, Fis family SYN_00973 PF00158 Sigma-54 interaction domain SYN_00973 PF00072 Response regulator receiver domain SYN_00974 PF00486 Transcriptional regulatory protein, C terminal SYN_00974 PF00072 Response regulator receiver domain SYN_00975 PF01584 CheW-like domain SYN_00977 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SYN_00977 PF17202 Single cache domain 3 SYN_00977 PF00672 HAMP domain SYN_00978 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SYN_00978 PF12729 Four helix bundle sensory module for signal transduction SYN_00978 PF00672 HAMP domain SYN_00979 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SYN_00979 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SYN_00981 PF00072 Response regulator receiver domain SYN_00981 PF00486 Transcriptional regulatory protein, C terminal SYN_00982 PF18073 Rubredoxin metal binding domain SYN_00983 PF00009 Elongation factor Tu GTP binding domain SYN_00983 PF03143 Elongation factor Tu C-terminal domain SYN_00983 PF03144 Elongation factor Tu domain 2 SYN_00984 PF00338 Ribosomal protein S10p/S20e SYN_00985 PF00297 Ribosomal protein L3 SYN_00986 PF00573 Ribosomal protein L4/L1 family SYN_00987 PF00276 Ribosomal protein L23 SYN_00988 PF00181 Ribosomal Proteins L2, RNA binding domain SYN_00988 PF03947 Ribosomal Proteins L2, C-terminal domain SYN_00989 PF00203 Ribosomal protein S19 SYN_00990 PF00237 Ribosomal protein L22p/L17e SYN_00991 PF07650 KH domain SYN_00991 PF00189 Ribosomal protein S3, C-terminal domain SYN_00992 PF00252 Ribosomal protein L16p/L10e SYN_00993 PF00831 Ribosomal L29 protein SYN_00994 PF03485 Arginyl tRNA synthetase N terminal domain SYN_00994 PF00750 tRNA synthetases class I (R) SYN_00994 PF05746 DALR anticodon binding domain SYN_00996 PF00448 SRP54-type protein, GTPase domain SYN_00996 PF02881 SRP54-type protein, helical bundle domain SYN_00996 PF02978 Signal peptide binding domain SYN_00998 PF06968 Biotin and Thiamin Synthesis associated domain SYN_00998 PF04055 Radical SAM superfamily SYN_00999 PF01476 LysM domain SYN_00999 PF01551 Peptidase family M23 SYN_01002 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SYN_01002 PF01676 Metalloenzyme superfamily SYN_01003 PF01661 Macro domain SYN_01006 PF05175 Methyltransferase small domain SYN_01009 PF00689 Cation transporting ATPase, C-terminus SYN_01009 PF00690 Cation transporter/ATPase, N-terminus SYN_01012 PF00825 Ribonuclease P SYN_01013 PF01809 Putative membrane protein insertion efficiency factor SYN_01014 PF02096 60Kd inner membrane protein SYN_01014 PF14849 YidC periplasmic domain SYN_01015 PF14804 Jag N-terminus SYN_01015 PF01424 R3H domain SYN_01016 PF01926 50S ribosome-binding GTPase SYN_01016 PF12631 MnmE helical domain SYN_01016 PF10396 GTP-binding protein TrmE N-terminus SYN_01017 PF00850 Histone deacetylase domain SYN_01019 PF00196 Bacterial regulatory proteins, luxR family SYN_01019 PF00072 Response regulator receiver domain SYN_01020 PF02146 Sir2 family SYN_01022 PF00753 Metallo-beta-lactamase superfamily SYN_01022 PF12706 Beta-lactamase superfamily domain SYN_01023 PF01938 TRAM domain SYN_01023 PF05958 tRNA (Uracil-5-)-methyltransferase SYN_01029 PF17785 PUA-like domain SYN_01029 PF10672 S-adenosylmethionine-dependent methyltransferase SYN_01031 PF01050 Mannose-6-phosphate isomerase SYN_01031 PF00483 Nucleotidyl transferase SYN_01032 PF00318 Ribosomal protein S2 SYN_01033 PF14760 Rnk N-terminus SYN_01033 PF01272 Transcription elongation factor, GreA/GreB, C-term SYN_01035 PF01960 ArgJ family SYN_01036 PF02810 SEC-C motif SYN_01036 PF07517 SecA DEAD-like domain SYN_01036 PF01043 SecA preprotein cross-linking domain SYN_01036 PF07516 SecA Wing and Scaffold domain SYN_01037 PF14490 Helix-hairpin-helix containing domain SYN_01037 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SYN_01037 PF13538 UvrD-like helicase C-terminal domain SYN_01040 PF00364 Biotin-requiring enzyme SYN_01040 PF02436 Conserved carboxylase domain SYN_01040 PF00682 HMGL-like SYN_01041 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SYN_01041 PF00289 Biotin carboxylase, N-terminal domain SYN_01041 PF02785 Biotin carboxylase C-terminal domain SYN_01044 PF01980 tRNA-methyltransferase O SYN_01045 PF02625 XdhC and CoxI family SYN_01045 PF13478 XdhC Rossmann domain SYN_01048 PF07715 TonB-dependent Receptor Plug Domain SYN_01048 PF00593 TonB dependent receptor SYN_01048 PF07660 Secretin and TonB N terminus short domain SYN_01050 PF13649 Methyltransferase domain SYN_01052 PF02472 Biopolymer transport protein ExbD/TolR SYN_01053 PF01618 MotA/TolQ/ExbB proton channel family SYN_01054 PF00005 ABC transporter SYN_01057 PF08241 Methyltransferase domain SYN_01064 PF00691 OmpA family SYN_01064 PF01389 OmpA-like transmembrane domain SYN_01066 PF01966 HD domain SYN_01066 PF13286 Phosphohydrolase-associated domain SYN_01069 PF02446 4-alpha-glucanotransferase SYN_01071 PF00266 Aminotransferase class-V SYN_01072 PF01206 Sulfurtransferase TusA SYN_01073 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SYN_01077 PF00512 His Kinase A (phospho-acceptor) domain SYN_01077 PF01627 Hpt domain SYN_01077 PF00989 PAS fold SYN_01077 PF00072 Response regulator receiver domain SYN_01077 PF00497 Bacterial extracellular solute-binding proteins, family 3 SYN_01077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01078 PF00072 Response regulator receiver domain SYN_01079 PF00072 Response regulator receiver domain SYN_01079 PF00990 Diguanylate cyclase, GGDEF domain SYN_01080 PF00999 Sodium/hydrogen exchanger family SYN_01080 PF03471 Transporter associated domain SYN_01080 PF02080 TrkA-C domain SYN_01083 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SYN_01083 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SYN_01084 PF02016 LD-carboxypeptidase N-terminal domain SYN_01084 PF17676 LD-carboxypeptidase C-terminal domain SYN_01085 PF07670 Nucleoside recognition SYN_01086 PF07670 Nucleoside recognition SYN_01090 PF01590 GAF domain SYN_01090 PF02954 Bacterial regulatory protein, Fis family SYN_01090 PF00158 Sigma-54 interaction domain SYN_01091 PF02386 Cation transport protein SYN_01092 PF02080 TrkA-C domain SYN_01092 PF02254 TrkA-N domain SYN_01093 PF00158 Sigma-54 interaction domain SYN_01093 PF00072 Response regulator receiver domain SYN_01093 PF02954 Bacterial regulatory protein, Fis family SYN_01094 PF00989 PAS fold SYN_01094 PF00512 His Kinase A (phospho-acceptor) domain SYN_01094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01094 PF13426 PAS domain SYN_01094 PF13188 PAS domain SYN_01096 PF00953 Glycosyl transferase family 4 SYN_01101 PF13439 Glycosyltransferase Family 4 SYN_01101 PF00534 Glycosyl transferases group 1 SYN_01103 PF00535 Glycosyl transferase family 2 SYN_01103 PF01501 Glycosyl transferase family 8 SYN_01107 PF00535 Glycosyl transferase family 2 SYN_01108 PF00535 Glycosyl transferase family 2 SYN_01111 PF03062 MBOAT, membrane-bound O-acyltransferase family SYN_01112 PF01370 NAD dependent epimerase/dehydratase family SYN_01113 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SYN_01113 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SYN_01113 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SYN_01122 PF00158 Sigma-54 interaction domain SYN_01122 PF02954 Bacterial regulatory protein, Fis family SYN_01122 PF01590 GAF domain SYN_01124 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SYN_01124 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SYN_01124 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SYN_01125 PF01370 NAD dependent epimerase/dehydratase family SYN_01128 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SYN_01129 PF00483 Nucleotidyl transferase SYN_01130 PF01370 NAD dependent epimerase/dehydratase family SYN_01131 PF02397 Bacterial sugar transferase SYN_01136 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_01141 PF13477 Glycosyl transferase 4-like SYN_01141 PF00534 Glycosyl transferases group 1 SYN_01142 PF13439 Glycosyltransferase Family 4 SYN_01142 PF00534 Glycosyl transferases group 1 SYN_01145 PF00550 Phosphopantetheine attachment site SYN_01145 PF00501 AMP-binding enzyme SYN_01145 PF00668 Condensation domain SYN_01145 PF13193 AMP-binding enzyme C-terminal domain SYN_01146 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SYN_01146 PF02770 Acyl-CoA dehydrogenase, middle domain SYN_01146 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SYN_01147 PF00491 Arginase family SYN_01149 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SYN_01149 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SYN_01156 PF13654 AAA domain SYN_01156 PF05362 Lon protease (S16) C-terminal proteolytic domain SYN_01157 PF00011 Hsp20/alpha crystallin family SYN_01158 PF16123 Hydroxyacylglutathione hydrolase C-terminus SYN_01158 PF00753 Metallo-beta-lactamase superfamily SYN_01159 PF08240 Alcohol dehydrogenase GroES-like domain SYN_01163 PF13847 Methyltransferase domain SYN_01163 PF03551 Transcriptional regulator PadR-like family SYN_01164 PF00155 Aminotransferase class I and II SYN_01166 PF02754 Cysteine-rich domain SYN_01166 PF13183 4Fe-4S dicluster domain SYN_01167 PF01565 FAD binding domain SYN_01167 PF02913 FAD linked oxidases, C-terminal domain SYN_01173 PF04055 Radical SAM superfamily SYN_01173 PF01926 50S ribosome-binding GTPase SYN_01173 PF01018 GTP1/OBG SYN_01175 PF18389 TrmO C-terminal domain SYN_01175 PF01980 tRNA-methyltransferase O SYN_01181 PF00158 Sigma-54 interaction domain SYN_01181 PF00072 Response regulator receiver domain SYN_01181 PF02954 Bacterial regulatory protein, Fis family SYN_01182 PF04324 BFD-like [2Fe-2S] binding domain SYN_01182 PF01106 NifU-like domain SYN_01182 PF01592 NifU-like N terminal domain SYN_01184 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) SYN_01185 PF10609 NUBPL iron-transfer P-loop NTPase SYN_01187 PF10609 NUBPL iron-transfer P-loop NTPase SYN_01191 PF00158 Sigma-54 interaction domain SYN_01191 PF02954 Bacterial regulatory protein, Fis family SYN_01191 PF13426 PAS domain SYN_01195 PF14535 AMP-binding enzyme C-terminal domain SYN_01195 PF00501 AMP-binding enzyme SYN_01200 PF01226 Formate/nitrite transporter SYN_01201 PF00857 Isochorismatase family SYN_01205 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SYN_01205 PF02563 Polysaccharide biosynthesis/export protein SYN_01205 PF10531 SLBB domain SYN_01208 PF01595 Cyclin M transmembrane N-terminal domain SYN_01208 PF03471 Transporter associated domain SYN_01208 PF00571 CBS domain SYN_01209 PF00317 Ribonucleotide reductase, all-alpha domain SYN_01209 PF02867 Ribonucleotide reductase, barrel domain SYN_01209 PF03477 ATP cone domain SYN_01210 PF00871 Acetokinase family SYN_01211 PF01515 Phosphate acetyl/butaryl transferase SYN_01213 PF00696 Amino acid kinase family SYN_01218 PF07690 Major Facilitator Superfamily SYN_01223 PF00501 AMP-binding enzyme SYN_01223 PF16177 Acetyl-coenzyme A synthetase N-terminus SYN_01223 PF13193 AMP-binding enzyme C-terminal domain SYN_01225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SYN_01225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SYN_01226 PF00317 Ribonucleotide reductase, all-alpha domain SYN_01226 PF02867 Ribonucleotide reductase, barrel domain SYN_01226 PF03477 ATP cone domain SYN_01228 PF00216 Bacterial DNA-binding protein SYN_01229 PF00258 Flavodoxin SYN_01234 PF00072 Response regulator receiver domain SYN_01234 PF01966 HD domain SYN_01236 PF02743 Cache domain SYN_01236 PF00672 HAMP domain SYN_01236 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SYN_01241 PF00571 CBS domain SYN_01242 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SYN_01242 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SYN_01248 PF00893 Small Multidrug Resistance protein SYN_01250 PF02634 FdhD/NarQ family SYN_01251 PF00266 Aminotransferase class-V SYN_01253 PF00291 Pyridoxal-phosphate dependent enzyme SYN_01255 PF01053 Cys/Met metabolism PLP-dependent enzyme SYN_01257 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_01258 PF02445 Quinolinate synthetase A protein SYN_01259 PF17827 PrmC N-terminal domain SYN_01259 PF05175 Methyltransferase small domain SYN_01260 PF00561 alpha/beta hydrolase fold SYN_01261 PF01641 SelR domain SYN_01261 PF01625 Peptide methionine sulfoxide reductase SYN_01262 PF02405 Permease MlaE SYN_01263 PF00005 ABC transporter SYN_01266 PF04333 MlaA lipoprotein SYN_01269 PF00107 Zinc-binding dehydrogenase SYN_01269 PF08240 Alcohol dehydrogenase GroES-like domain SYN_01273 PF04055 Radical SAM superfamily SYN_01273 PF18693 TRAM domain SYN_01273 PF00919 Uncharacterized protein family UPF0004 SYN_01274 PF09397 Ftsk gamma domain SYN_01274 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SYN_01274 PF17854 FtsK alpha domain SYN_01274 PF01580 FtsK/SpoIIIE family SYN_01278 PF03755 YicC-like family, N-terminal region SYN_01278 PF08340 Domain of unknown function (DUF1732) SYN_01279 PF00625 Guanylate kinase SYN_01280 PF01192 RNA polymerase Rpb6 SYN_01281 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SYN_01282 PF00588 SpoU rRNA Methylase family SYN_01282 PF08032 RNA 2'-O ribose methyltransferase substrate binding SYN_01284 PF00482 Type II secretion system (T2SS), protein F SYN_01287 PF00753 Metallo-beta-lactamase superfamily SYN_01290 PF00403 Heavy-metal-associated domain SYN_01291 PF13426 PAS domain SYN_01291 PF00072 Response regulator receiver domain SYN_01291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01292 PF00486 Transcriptional regulatory protein, C terminal SYN_01292 PF00072 Response regulator receiver domain SYN_01293 PF00881 Nitroreductase family SYN_01294 PF00857 Isochorismatase family SYN_01297 PF00313 'Cold-shock' DNA-binding domain SYN_01298 PF00270 DEAD/DEAH box helicase SYN_01298 PF03880 DbpA RNA binding domain SYN_01298 PF00271 Helicase conserved C-terminal domain SYN_01299 PF01817 Chorismate mutase type II SYN_01299 PF00800 Prephenate dehydratase SYN_01300 PF00793 DAHP synthetase I family SYN_01300 PF18152 DAHP synthase ferredoxin-like domain SYN_01305 PF01844 HNH endonuclease SYN_01307 PF00795 Carbon-nitrogen hydrolase SYN_01307 PF02540 NAD synthase SYN_01308 PF02649 Type I GTP cyclohydrolase folE2 SYN_01309 PF00378 Enoyl-CoA hydratase/isomerase SYN_01310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SYN_01310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SYN_01313 PF02586 SOS response associated peptidase (SRAP) SYN_01314 PF11798 IMS family HHH motif SYN_01314 PF00817 impB/mucB/samB family SYN_01314 PF11799 impB/mucB/samB family C-terminal domain SYN_01320 PF06794 Uncharacterised protein family (UPF0270) SYN_01324 PF00072 Response regulator receiver domain SYN_01324 PF00990 Diguanylate cyclase, GGDEF domain SYN_01325 PF00872 Transposase, Mutator family SYN_01329 PF01695 IstB-like ATP binding protein SYN_01331 PF00343 Carbohydrate phosphorylase SYN_01331 PF11897 Protein of unknown function (DUF3417) SYN_01336 PF17764 3′ DNA-binding domain (3′BD) SYN_01336 PF18074 Primosomal protein N C-terminal domain SYN_01336 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SYN_01336 PF04851 Type III restriction enzyme, res subunit SYN_01336 PF00271 Helicase conserved C-terminal domain SYN_01337 PF01258 Prokaryotic dksA/traR C4-type zinc finger SYN_01338 PF00156 Phosphoribosyl transferase domain SYN_01341 PF00528 Binding-protein-dependent transport system inner membrane component SYN_01342 PF00528 Binding-protein-dependent transport system inner membrane component SYN_01342 PF12911 N-terminal TM domain of oligopeptide transport permease C SYN_01343 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SYN_01343 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SYN_01343 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SYN_01343 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SYN_01347 PF17284 Spermidine synthase tetramerisation domain SYN_01348 PF01541 GIY-YIG catalytic domain SYN_01348 PF12826 Helix-hairpin-helix motif SYN_01348 PF08459 UvrC Helix-hairpin-helix N-terminal SYN_01348 PF02151 UvrB/uvrC motif SYN_01349 PF01169 Uncharacterized protein family UPF0016 SYN_01350 PF00696 Amino acid kinase family SYN_01350 PF01472 PUA domain SYN_01351 PF01926 50S ribosome-binding GTPase SYN_01351 PF01018 GTP1/OBG SYN_01352 PF01016 Ribosomal L27 protein SYN_01353 PF00829 Ribosomal prokaryotic L21 protein SYN_01359 PF01050 Mannose-6-phosphate isomerase SYN_01359 PF00483 Nucleotidyl transferase SYN_01363 PF00072 Response regulator receiver domain SYN_01363 PF00486 Transcriptional regulatory protein, C terminal SYN_01364 PF08447 PAS fold SYN_01364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01364 PF00512 His Kinase A (phospho-acceptor) domain SYN_01364 PF00989 PAS fold SYN_01365 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) SYN_01369 PF10531 SLBB domain SYN_01369 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SYN_01369 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_01370 PF02906 Iron only hydrogenase large subunit, C-terminal domain SYN_01370 PF02256 Iron hydrogenase small subunit SYN_01370 PF00037 4Fe-4S binding domain SYN_01370 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SYN_01372 PF12631 MnmE helical domain SYN_01372 PF10396 GTP-binding protein TrmE N-terminus SYN_01372 PF01926 50S ribosome-binding GTPase SYN_01373 PF00158 Sigma-54 interaction domain SYN_01373 PF00072 Response regulator receiver domain SYN_01374 PF00512 His Kinase A (phospho-acceptor) domain SYN_01374 PF08448 PAS fold SYN_01374 PF13188 PAS domain SYN_01374 PF00072 Response regulator receiver domain SYN_01374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01375 PF04343 Protein of unknown function, DUF488 SYN_01377 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SYN_01377 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SYN_01378 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SYN_01381 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_01381 PF01610 Transposase SYN_01381 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_01383 PF00301 Rubredoxin SYN_01385 PF00301 Rubredoxin SYN_01390 PF00764 Arginosuccinate synthase SYN_01394 PF04321 RmlD substrate binding domain SYN_01395 PF01416 tRNA pseudouridine synthase SYN_01396 PF00162 Phosphoglycerate kinase SYN_01398 PF01039 Carboxyl transferase domain SYN_01399 PF00749 tRNA synthetases class I (E and Q), catalytic domain SYN_01400 PF02542 YgbB family SYN_01401 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SYN_01404 PF00437 Type II/IV secretion system protein SYN_01405 PF01624 MutS domain I SYN_01405 PF05192 MutS domain III SYN_01405 PF00488 MutS domain V SYN_01405 PF05190 MutS family domain IV SYN_01405 PF05188 MutS domain II SYN_01406 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV SYN_01407 PF00912 Transglycosylase SYN_01408 PF00877 NlpC/P60 family SYN_01409 PF00330 Aconitase family (aconitate hydratase) SYN_01410 PF00180 Isocitrate/isopropylmalate dehydrogenase SYN_01411 PF04055 Radical SAM superfamily SYN_01413 PF01464 Transglycosylase SLT domain SYN_01413 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SYN_01421 PF00375 Sodium:dicarboxylate symporter family SYN_01423 PF01497 Periplasmic binding protein SYN_01425 PF00593 TonB dependent receptor SYN_01425 PF07715 TonB-dependent Receptor Plug Domain SYN_01426 PF00005 ABC transporter SYN_01427 PF01032 FecCD transport family SYN_01428 PF11871 Domain of unknown function (DUF3391) SYN_01428 PF01966 HD domain SYN_01431 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SYN_01434 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SYN_01437 PF00313 'Cold-shock' DNA-binding domain SYN_01438 PF00512 His Kinase A (phospho-acceptor) domain SYN_01438 PF00072 Response regulator receiver domain SYN_01438 PF13188 PAS domain SYN_01438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01438 PF08448 PAS fold SYN_01439 PF07992 Pyridine nucleotide-disulphide oxidoreductase SYN_01440 PF01790 Prolipoprotein diacylglyceryl transferase SYN_01441 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SYN_01441 PF07992 Pyridine nucleotide-disulphide oxidoreductase SYN_01444 PF00588 SpoU rRNA Methylase family SYN_01444 PF08032 RNA 2'-O ribose methyltransferase substrate binding SYN_01445 PF03091 CutA1 divalent ion tolerance protein SYN_01447 PF00456 Transketolase, thiamine diphosphate binding domain SYN_01447 PF02780 Transketolase, C-terminal domain SYN_01447 PF02779 Transketolase, pyrimidine binding domain SYN_01448 PF03190 Protein of unknown function, DUF255 SYN_01451 PF00977 Histidine biosynthesis protein SYN_01453 PF01252 Signal peptidase (SPase) II SYN_01454 PF06827 Zinc finger found in FPG and IleRS SYN_01454 PF00133 tRNA synthetases class I (I, L, M and V) SYN_01454 PF08264 Anticodon-binding domain of tRNA SYN_01455 PF01212 Beta-eliminating lyase SYN_01458 PF01914 MarC family integral membrane protein SYN_01459 PF00005 ABC transporter SYN_01460 PF00005 ABC transporter SYN_01461 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_01465 PF08447 PAS fold SYN_01465 PF00989 PAS fold SYN_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01465 PF00512 His Kinase A (phospho-acceptor) domain SYN_01466 PF00158 Sigma-54 interaction domain SYN_01466 PF02954 Bacterial regulatory protein, Fis family SYN_01466 PF00072 Response regulator receiver domain SYN_01467 PF00460 Flagella basal body rod protein SYN_01468 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SYN_01468 PF00460 Flagella basal body rod protein SYN_01469 PF02049 Flagellar hook-basal body complex protein FliE SYN_01470 PF08345 Flagellar M-ring protein C-terminal SYN_01470 PF01514 Secretory protein of YscJ/FliF family SYN_01471 PF01706 FliG C-terminal domain SYN_01471 PF14841 FliG middle domain SYN_01471 PF14842 FliG N-terminal domain SYN_01472 PF02108 Flagellar assembly protein FliH SYN_01473 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_01473 PF02874 ATP synthase alpha/beta family, beta-barrel domain SYN_01473 PF18269 T3SS EscN ATPase C-terminal domain SYN_01478 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SYN_01478 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SYN_01481 PF00072 Response regulator receiver domain SYN_01481 PF00211 Adenylate and Guanylate cyclase catalytic domain SYN_01482 PF01168 Alanine racemase, N-terminal domain SYN_01482 PF00842 Alanine racemase, C-terminal domain SYN_01483 PF01820 D-ala D-ala ligase N-terminus SYN_01483 PF07478 D-ala D-ala ligase C-terminus SYN_01486 PF00877 NlpC/P60 family SYN_01492 PF00263 Bacterial type II and III secretion system protein SYN_01492 PF04972 BON domain SYN_01492 PF13629 Pilus formation protein N terminal region SYN_01496 PF01883 Iron-sulfur cluster assembly protein SYN_01496 PF10609 NUBPL iron-transfer P-loop NTPase SYN_01497 PF00437 Type II/IV secretion system protein SYN_01505 PF00092 von Willebrand factor type A domain SYN_01507 PF13173 AAA domain SYN_01507 PF13635 Domain of unknown function (DUF4143) SYN_01510 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SYN_01515 PF00005 ABC transporter SYN_01517 PF00155 Aminotransferase class I and II SYN_01518 PF01743 Poly A polymerase head domain SYN_01518 PF12627 Probable RNA and SrmB- binding site of polymerase A SYN_01518 PF13735 tRNA nucleotidyltransferase domain 2 putative SYN_01520 PF01964 Radical SAM ThiC family SYN_01521 PF02581 Thiamine monophosphate synthase SYN_01521 PF08543 Phosphomethylpyrimidine kinase SYN_01522 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SYN_01522 PF04263 Thiamin pyrophosphokinase, catalytic domain SYN_01524 PF02355 Protein export membrane protein SYN_01524 PF07549 SecD/SecF GG Motif SYN_01525 PF02355 Protein export membrane protein SYN_01525 PF07549 SecD/SecF GG Motif SYN_01527 PF10502 Signal peptidase, peptidase S26 SYN_01528 PF01566 Natural resistance-associated macrophage protein SYN_01529 PF03448 MgtE intracellular N domain SYN_01529 PF01769 Divalent cation transporter SYN_01529 PF00571 CBS domain SYN_01532 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SYN_01532 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SYN_01533 PF01979 Amidohydrolase family SYN_01534 PF00571 CBS domain SYN_01534 PF03448 MgtE intracellular N domain SYN_01534 PF01769 Divalent cation transporter SYN_01535 PF11967 Recombination protein O N terminal SYN_01535 PF02565 Recombination protein O C terminal SYN_01536 PF02091 Glycyl-tRNA synthetase alpha subunit SYN_01537 PF05746 DALR anticodon binding domain SYN_01537 PF02092 Glycyl-tRNA synthetase beta subunit SYN_01539 PF00582 Universal stress protein family SYN_01548 PF03958 Bacterial type II/III secretion system short domain SYN_01548 PF00263 Bacterial type II and III secretion system protein SYN_01549 PF00437 Type II/IV secretion system protein SYN_01550 PF00482 Type II secretion system (T2SS), protein F SYN_01551 PF08334 Type II secretion system (T2SS), protein G SYN_01551 PF07963 Prokaryotic N-terminal methylation motif SYN_01552 PF07963 Prokaryotic N-terminal methylation motif SYN_01552 PF12019 Type II transport protein GspH SYN_01559 PF01242 6-pyruvoyl tetrahydropterin synthase SYN_01560 PF04055 Radical SAM superfamily SYN_01561 PF06508 Queuosine biosynthesis protein QueC SYN_01562 PF04191 Phospholipid methyltransferase SYN_01563 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SYN_01564 PF00664 ABC transporter transmembrane region SYN_01564 PF00005 ABC transporter SYN_01565 PF02684 Lipid-A-disaccharide synthetase SYN_01566 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SYN_01566 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SYN_01567 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SYN_01567 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_01568 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SYN_01568 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_01572 PF01979 Amidohydrolase family SYN_01574 PF03144 Elongation factor Tu domain 2 SYN_01574 PF00009 Elongation factor Tu GTP binding domain SYN_01574 PF03764 Elongation factor G, domain IV SYN_01574 PF14492 Elongation Factor G, domain II SYN_01574 PF00679 Elongation factor G C-terminus SYN_01577 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) SYN_01580 PF03600 Citrate transporter SYN_01590 PF00347 Ribosomal protein L6 SYN_01591 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SYN_01592 PF00333 Ribosomal protein S5, N-terminal domain SYN_01592 PF03719 Ribosomal protein S5, C-terminal domain SYN_01593 PF00327 Ribosomal protein L30p/L7e SYN_01594 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SYN_01595 PF00344 SecY translocase SYN_01596 PF00557 Metallopeptidase family M24 SYN_01597 PF01176 Translation initiation factor 1A / IF-1 SYN_01598 PF00416 Ribosomal protein S13/S18 SYN_01599 PF00411 Ribosomal protein S11 SYN_01600 PF00163 Ribosomal protein S4/S9 N-terminal domain SYN_01600 PF01479 S4 domain SYN_01601 PF01000 RNA polymerase Rpb3/RpoA insert domain SYN_01601 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SYN_01601 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SYN_01603 PF01196 Ribosomal protein L17 SYN_01605 PF12706 Beta-lactamase superfamily domain SYN_01606 PF02875 Mur ligase family, glutamate ligase domain SYN_01606 PF08245 Mur ligase middle domain SYN_01607 PF04453 LPS transport system D SYN_01607 PF03968 OstA-like protein SYN_01609 PF02525 Flavodoxin-like fold SYN_01610 PF02254 TrkA-N domain SYN_01610 PF00999 Sodium/hydrogen exchanger family SYN_01611 PF02254 TrkA-N domain SYN_01611 PF00999 Sodium/hydrogen exchanger family SYN_01613 PF00120 Glutamine synthetase, catalytic domain SYN_01613 PF18318 Glutamine synthetase C-terminal domain SYN_01613 PF12437 Glutamine synthetase type III N terminal SYN_01619 PF10518 TAT (twin-arginine translocation) pathway signal sequence SYN_01619 PF00149 Calcineurin-like phosphoesterase SYN_01624 PF00156 Phosphoribosyl transferase domain SYN_01624 PF13537 Glutamine amidotransferase domain SYN_01625 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SYN_01625 PF02142 MGS-like domain SYN_01625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SYN_01626 PF00117 Glutamine amidotransferase class-I SYN_01626 PF00958 GMP synthase C terminal domain SYN_01627 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SYN_01627 PF00117 Glutamine amidotransferase class-I SYN_01628 PF00120 Glutamine synthetase, catalytic domain SYN_01628 PF03951 Glutamine synthetase, beta-Grasp domain SYN_01629 PF07992 Pyridine nucleotide-disulphide oxidoreductase SYN_01629 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SYN_01630 PF01645 Conserved region in glutamate synthase SYN_01630 PF13187 4Fe-4S dicluster domain SYN_01633 PF00158 Sigma-54 interaction domain SYN_01633 PF02954 Bacterial regulatory protein, Fis family SYN_01633 PF01590 GAF domain SYN_01635 PF00072 Response regulator receiver domain SYN_01635 PF02954 Bacterial regulatory protein, Fis family SYN_01635 PF00158 Sigma-54 interaction domain SYN_01636 PF00989 PAS fold SYN_01636 PF13426 PAS domain SYN_01636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01636 PF00512 His Kinase A (phospho-acceptor) domain SYN_01636 PF13188 PAS domain SYN_01637 PF01610 Transposase SYN_01637 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_01637 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_01638 PF00501 AMP-binding enzyme SYN_01638 PF13193 AMP-binding enzyme C-terminal domain SYN_01639 PF00939 Sodium:sulfate symporter transmembrane region SYN_01640 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SYN_01640 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SYN_01643 PF02754 Cysteine-rich domain SYN_01643 PF13183 4Fe-4S dicluster domain SYN_01644 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SYN_01644 PF01266 FAD dependent oxidoreductase SYN_01648 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SYN_01648 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_01648 PF00037 4Fe-4S binding domain SYN_01649 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_01649 PF00384 Molybdopterin oxidoreductase SYN_01649 PF01568 Molydopterin dinucleotide binding domain SYN_01649 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SYN_01650 PF13932 GidA associated domain SYN_01650 PF01134 Glucose inhibited division protein A SYN_01651 PF04055 Radical SAM superfamily SYN_01651 PF16199 Radical_SAM C-terminal domain SYN_01652 PF05195 Aminopeptidase P, N-terminal domain SYN_01652 PF00557 Metallopeptidase family M24 SYN_01653 PF00378 Enoyl-CoA hydratase/isomerase SYN_01654 PF00378 Enoyl-CoA hydratase/isomerase SYN_01655 PF00107 Zinc-binding dehydrogenase SYN_01655 PF08240 Alcohol dehydrogenase GroES-like domain SYN_01659 PF02508 Rnf-Nqr subunit, membrane protein SYN_01661 PF02508 Rnf-Nqr subunit, membrane protein SYN_01662 PF04205 FMN-binding domain SYN_01663 PF03116 NQR2, RnfD, RnfE family SYN_01664 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_01664 PF13375 RnfC Barrel sandwich hybrid domain SYN_01664 PF13237 4Fe-4S dicluster domain SYN_01664 PF10531 SLBB domain SYN_01665 PF01061 ABC-2 type transporter SYN_01666 PF00005 ABC transporter SYN_01668 PF02424 ApbE family SYN_01672 PF01568 Molydopterin dinucleotide binding domain SYN_01672 PF00384 Molybdopterin oxidoreductase SYN_01676 PF02634 FdhD/NarQ family SYN_01677 PF02634 FdhD/NarQ family SYN_01681 PF02803 Thiolase, C-terminal domain SYN_01681 PF00108 Thiolase, N-terminal domain SYN_01683 PF00117 Glutamine amidotransferase class-I SYN_01684 PF00977 Histidine biosynthesis protein SYN_01685 PF01680 SOR/SNZ family SYN_01686 PF01174 SNO glutamine amidotransferase family SYN_01693 PF00550 Phosphopantetheine attachment site SYN_01694 PF02801 Beta-ketoacyl synthase, C-terminal domain SYN_01694 PF00109 Beta-ketoacyl synthase, N-terminal domain SYN_01695 PF07977 FabA-like domain SYN_01697 PF07977 FabA-like domain SYN_01698 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SYN_01698 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SYN_01699 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SYN_01699 PF02770 Acyl-CoA dehydrogenase, middle domain SYN_01699 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SYN_01700 PF00698 Acyl transferase domain SYN_01701 PF00989 PAS fold SYN_01701 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01701 PF00512 His Kinase A (phospho-acceptor) domain SYN_01702 PF02954 Bacterial regulatory protein, Fis family SYN_01702 PF00072 Response regulator receiver domain SYN_01702 PF00158 Sigma-54 interaction domain SYN_01706 PF17820 PDZ domain SYN_01706 PF13180 PDZ domain SYN_01708 PF00920 Dehydratase family SYN_01709 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SYN_01709 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SYN_01711 PF00205 Thiamine pyrophosphate enzyme, central domain SYN_01711 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_01711 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SYN_01712 PF10369 Small subunit of acetolactate synthase SYN_01712 PF01842 ACT domain SYN_01713 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SYN_01713 PF00205 Thiamine pyrophosphate enzyme, central domain SYN_01713 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_01717 PF03129 Anticodon binding domain SYN_01717 PF02824 TGS domain SYN_01717 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SYN_01717 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SYN_01718 PF00707 Translation initiation factor IF-3, C-terminal domain SYN_01718 PF05198 Translation initiation factor IF-3, N-terminal domain SYN_01719 PF01632 Ribosomal protein L35 SYN_01720 PF00453 Ribosomal protein L20 SYN_01721 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SYN_01721 PF01409 tRNA synthetases class II core domain (F) SYN_01723 PF03484 tRNA synthetase B5 domain SYN_01723 PF03147 Ferredoxin-fold anticodon binding domain SYN_01723 PF01588 Putative tRNA binding domain SYN_01723 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SYN_01723 PF03483 B3/4 domain SYN_01724 PF00216 Bacterial DNA-binding protein SYN_01725 PF13411 MerR HTH family regulatory protein SYN_01727 PF03613 PTS system mannose/fructose/sorbose family IID component SYN_01728 PF00381 PTS HPr component phosphorylation site SYN_01729 PF05524 PEP-utilising enzyme, N-terminal SYN_01729 PF02896 PEP-utilising enzyme, TIM barrel domain SYN_01729 PF00391 PEP-utilising enzyme, mobile domain SYN_01733 PF03952 Enolase, N-terminal domain SYN_01733 PF00113 Enolase, C-terminal TIM barrel domain SYN_01734 PF03652 Holliday junction resolvase SYN_01735 PF02618 YceG-like family SYN_01736 PF02381 MraZ protein, putative antitoxin-like SYN_01737 PF01795 MraW methylase family SYN_01738 PF04977 Septum formation initiator SYN_01739 PF03717 Penicillin-binding Protein dimerisation domain SYN_01739 PF03793 PASTA domain SYN_01739 PF00905 Penicillin binding protein transpeptidase domain SYN_01740 PF01225 Mur ligase family, catalytic domain SYN_01740 PF02875 Mur ligase family, glutamate ligase domain SYN_01740 PF08245 Mur ligase middle domain SYN_01742 PF08245 Mur ligase middle domain SYN_01742 PF02875 Mur ligase family, glutamate ligase domain SYN_01742 PF01225 Mur ligase family, catalytic domain SYN_01743 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SYN_01743 PF00953 Glycosyl transferase family 4 SYN_01744 PF08245 Mur ligase middle domain SYN_01744 PF02875 Mur ligase family, glutamate ligase domain SYN_01745 PF01098 Cell cycle protein SYN_01746 PF03033 Glycosyltransferase family 28 N-terminal domain SYN_01746 PF04101 Glycosyltransferase family 28 C-terminal domain SYN_01747 PF01225 Mur ligase family, catalytic domain SYN_01747 PF08245 Mur ligase middle domain SYN_01747 PF02875 Mur ligase family, glutamate ligase domain SYN_01748 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SYN_01748 PF01565 FAD binding domain SYN_01761 PF07963 Prokaryotic N-terminal methylation motif SYN_01761 PF00114 Pilin (bacterial filament) SYN_01762 PF13167 GTP-binding GTPase N-terminal SYN_01762 PF16360 GTP-binding GTPase Middle Region SYN_01762 PF01926 50S ribosome-binding GTPase SYN_01763 PF00834 Ribulose-phosphate 3 epimerase family SYN_01766 PF03641 Possible lysine decarboxylase SYN_01767 PF01165 Ribosomal protein S21 SYN_01768 PF01597 Glycine cleavage H-protein SYN_01769 PF00557 Metallopeptidase family M24 SYN_01769 PF01321 Creatinase/Prolidase N-terminal domain SYN_01772 PF00263 Bacterial type II and III secretion system protein SYN_01772 PF03958 Bacterial type II/III secretion system short domain SYN_01772 PF07660 Secretin and TonB N terminus short domain SYN_01772 PF11741 AMIN domain SYN_01776 PF11983 Membrane-attachment and polymerisation-promoting switch SYN_01776 PF02491 SHS2 domain inserted in FTSA SYN_01779 PF00692 dUTPase SYN_01780 PF03725 3' exoribonuclease family, domain 2 SYN_01780 PF01138 3' exoribonuclease family, domain 1 SYN_01780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SYN_01780 PF00013 KH domain SYN_01780 PF00575 S1 RNA binding domain SYN_01782 PF00312 Ribosomal protein S15 SYN_01783 PF01509 TruB family pseudouridylate synthase (N terminal domain) SYN_01783 PF16198 tRNA pseudouridylate synthase B C-terminal domain SYN_01784 PF02272 DHHA1 domain SYN_01784 PF01368 DHH family SYN_01785 PF02033 Ribosome-binding factor A SYN_01786 PF04456 Protein of unknown function (DUF503) SYN_01787 PF11987 Translation-initiation factor 2 SYN_01787 PF00009 Elongation factor Tu GTP binding domain SYN_01787 PF04760 Translation initiation factor IF-2, N-terminal region SYN_01789 PF00575 S1 RNA binding domain SYN_01789 PF08529 NusA N-terminal domain SYN_01789 PF13184 NusA-like KH domain SYN_01790 PF02576 RimP N-terminal domain SYN_01790 PF17384 RimP C-terminal SH3 domain SYN_01792 PF00815 Histidinol dehydrogenase SYN_01793 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SYN_01794 PF05175 Methyltransferase small domain SYN_01794 PF17827 PrmC N-terminal domain SYN_01795 PF03462 PCRF domain SYN_01795 PF00472 RF-1 domain SYN_01796 PF01197 Ribosomal protein L31 SYN_01798 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_01798 PF07497 Rho termination factor, RNA-binding domain SYN_01798 PF07498 Rho termination factor, N-terminal domain SYN_01800 PF00849 RNA pseudouridylate synthase SYN_01801 PF03841 L-seryl-tRNA selenium transferase SYN_01801 PF12390 Selenocysteine synthase N terminal SYN_01802 PF06969 HemN C-terminal domain SYN_01802 PF04055 Radical SAM superfamily SYN_01803 PF01327 Polypeptide deformylase SYN_01804 PF00753 Metallo-beta-lactamase superfamily SYN_01804 PF12706 Beta-lactamase superfamily domain SYN_01806 PF10776 Protein of unknown function (DUF2600) SYN_01808 PF00512 His Kinase A (phospho-acceptor) domain SYN_01808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01809 PF02954 Bacterial regulatory protein, Fis family SYN_01809 PF00158 Sigma-54 interaction domain SYN_01809 PF00072 Response regulator receiver domain SYN_01810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SYN_01810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SYN_01814 PF01042 Endoribonuclease L-PSP SYN_01815 PF11412 Disulphide bond corrector protein DsbC SYN_01815 PF00085 Thioredoxin SYN_01815 PF02683 Cytochrome C biogenesis protein transmembrane region SYN_01819 PF11855 Protein of unknown function (DUF3375) SYN_01824 PF04851 Type III restriction enzyme, res subunit SYN_01824 PF08774 VRR-NUC domain SYN_01825 PF18273 Type III R-M EcoP15I C-terminal domain SYN_01825 PF01555 DNA methylase SYN_01827 PF00271 Helicase conserved C-terminal domain SYN_01827 PF00176 SNF2 family N-terminal domain SYN_01849 PF00580 UvrD/REP helicase N-terminal domain SYN_01849 PF13361 UvrD-like helicase C-terminal domain SYN_01852 PF00176 SNF2 family N-terminal domain SYN_01852 PF00271 Helicase conserved C-terminal domain SYN_01855 PF13280 WYL domain SYN_01855 PF08279 HTH domain SYN_01869 PF06834 TraU protein SYN_01874 PF06122 Conjugative relaxosome accessory transposon protein SYN_01884 PF01464 Transglycosylase SLT domain SYN_01899 PF01695 IstB-like ATP binding protein SYN_01900 PF00665 Integrase core domain SYN_01901 PF04607 Region found in RelA / SpoT proteins SYN_01901 PF02824 TGS domain SYN_01901 PF13291 ACT domain SYN_01903 PF04041 beta-1,4-mannooligosaccharide phosphorylase SYN_01904 PF00004 ATPase family associated with various cellular activities (AAA) SYN_01904 PF06480 FtsH Extracellular SYN_01904 PF17862 AAA+ lid domain SYN_01904 PF01434 Peptidase family M41 SYN_01906 PF00226 DnaJ domain SYN_01906 PF00684 DnaJ central domain SYN_01906 PF01556 DnaJ C terminal domain SYN_01907 PF00011 Hsp20/alpha crystallin family SYN_01908 PF00166 Chaperonin 10 Kd subunit SYN_01909 PF00118 TCP-1/cpn60 chaperonin family SYN_01911 PF13361 UvrD-like helicase C-terminal domain SYN_01911 PF00580 UvrD/REP helicase N-terminal domain SYN_01916 PF00589 Phage integrase family SYN_01916 PF13356 Arm DNA-binding domain SYN_01918 PF00679 Elongation factor G C-terminus SYN_01918 PF00009 Elongation factor Tu GTP binding domain SYN_01918 PF03144 Elongation factor Tu domain 2 SYN_01918 PF03764 Elongation factor G, domain IV SYN_01918 PF14492 Elongation Factor G, domain II SYN_01919 PF00158 Sigma-54 interaction domain SYN_01919 PF01590 GAF domain SYN_01920 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_01920 PF01610 Transposase SYN_01920 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_01921 PF00158 Sigma-54 interaction domain SYN_01921 PF02954 Bacterial regulatory protein, Fis family SYN_01921 PF00072 Response regulator receiver domain SYN_01923 PF01784 NIF3 (NGG1p interacting factor 3) SYN_01924 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SYN_01926 PF03741 Integral membrane protein TerC family SYN_01929 PF00271 Helicase conserved C-terminal domain SYN_01929 PF00270 DEAD/DEAH box helicase SYN_01932 PF07995 Glucose / Sorbosone dehydrogenase SYN_01933 PF01817 Chorismate mutase type II SYN_01933 PF02153 Prephenate dehydrogenase SYN_01934 PF01264 Chorismate synthase SYN_01935 PF01202 Shikimate kinase SYN_01936 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SYN_01937 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SYN_01937 PF01488 Shikimate / quinate 5-dehydrogenase SYN_01937 PF08501 Shikimate dehydrogenase substrate binding domain SYN_01938 PF01487 Type I 3-dehydroquinase SYN_01939 PF01761 3-dehydroquinate synthase SYN_01940 PF18152 DAHP synthase ferredoxin-like domain SYN_01940 PF00793 DAHP synthetase I family SYN_01941 PF00290 Tryptophan synthase alpha chain SYN_01942 PF00291 Pyridoxal-phosphate dependent enzyme SYN_01943 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SYN_01944 PF00218 Indole-3-glycerol phosphate synthase SYN_01945 PF02885 Glycosyl transferase family, helical bundle domain SYN_01945 PF00591 Glycosyl transferase family, a/b domain SYN_01946 PF00117 Glutamine amidotransferase class-I SYN_01948 PF06574 FAD synthetase SYN_01948 PF01687 Riboflavin kinase SYN_01949 PF00583 Acetyltransferase (GNAT) family SYN_01949 PF13380 CoA binding domain SYN_01949 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_01952 PF04493 Endonuclease V SYN_01953 PF00072 Response regulator receiver domain SYN_01953 PF00196 Bacterial regulatory proteins, luxR family SYN_01954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_01954 PF07730 Histidine kinase SYN_01960 PF04055 Radical SAM superfamily SYN_01960 PF06463 Molybdenum Cofactor Synthesis C SYN_01964 PF04359 Protein of unknown function (DUF493) SYN_01965 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SYN_01965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_01966 PF00155 Aminotransferase class I and II SYN_01967 PF14489 QueF-like protein SYN_01968 PF01554 MatE SYN_01974 PF01741 Large-conductance mechanosensitive channel, MscL SYN_01975 PF02322 Cytochrome bd terminal oxidase subunit II SYN_01976 PF01654 Cytochrome bd terminal oxidase subunit I SYN_01977 PF03061 Thioesterase superfamily SYN_01978 PF00005 ABC transporter SYN_01978 PF12848 ABC transporter SYN_01980 PF13580 SIS domain SYN_01981 PF01025 GrpE SYN_01983 PF00012 Hsp70 protein SYN_01984 PF01975 Survival protein SurE SYN_01987 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SYN_01987 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SYN_01988 PF00291 Pyridoxal-phosphate dependent enzyme SYN_01990 PF16193 AAA C-terminal domain SYN_01990 PF12002 MgsA AAA+ ATPase C terminal SYN_01990 PF00004 ATPase family associated with various cellular activities (AAA) SYN_01991 PF01979 Amidohydrolase family SYN_01993 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_01994 PF00005 ABC transporter SYN_01995 PF00005 ABC transporter SYN_01995 PF02687 FtsX-like permease family SYN_01995 PF12704 MacB-like periplasmic core domain SYN_01997 PF03330 Lytic transglycolase SYN_01998 PF00912 Transglycosylase SYN_01998 PF00905 Penicillin binding protein transpeptidase domain SYN_02002 PF00171 Aldehyde dehydrogenase family SYN_02003 PF01467 Cytidylyltransferase-like SYN_02005 PF00990 Diguanylate cyclase, GGDEF domain SYN_02005 PF00072 Response regulator receiver domain SYN_02006 PF02678 Pirin SYN_02006 PF05726 Pirin C-terminal cupin domain SYN_02008 PF01268 Formate--tetrahydrofolate ligase SYN_02012 PF11799 impB/mucB/samB family C-terminal domain SYN_02012 PF00817 impB/mucB/samB family SYN_02012 PF11798 IMS family HHH motif SYN_02019 PF00216 Bacterial DNA-binding protein SYN_02023 PF00595 PDZ domain SYN_02024 PF17804 Tail specific protease N-terminal domain SYN_02024 PF11818 C-terminal domain of tail specific protease (DUF3340) SYN_02024 PF00595 PDZ domain SYN_02024 PF03572 Peptidase family S41 SYN_02026 PF01411 tRNA synthetases class II (A) SYN_02026 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SYN_02026 PF02272 DHHA1 domain SYN_02027 PF02631 RecX family SYN_02028 PF00154 recA bacterial DNA recombination protein SYN_02029 PF02834 LigT like Phosphoesterase SYN_02030 PF02464 Competence-damaged protein SYN_02030 PF18146 Damage-inducible protein CinA KH domain SYN_02030 PF00994 Probable molybdopterin binding domain SYN_02037 PF04542 Sigma-70 region 2 SYN_02037 PF08281 Sigma-70, region 4 SYN_02039 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SYN_02042 PF01555 DNA methylase SYN_02043 PF08378 Nuclease-related domain SYN_02046 PF01139 tRNA-splicing ligase RtcB SYN_02048 PF03989 DNA gyrase C-terminal domain, beta-propeller SYN_02048 PF00521 DNA gyrase/topoisomerase IV, subunit A SYN_02049 PF01751 Toprim domain SYN_02049 PF18053 DNA gyrase B subunit insert domain SYN_02049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02049 PF00986 DNA gyrase B subunit, carboxyl terminus SYN_02049 PF00204 DNA gyrase B SYN_02050 PF02768 DNA polymerase III beta subunit, C-terminal domain SYN_02050 PF00712 DNA polymerase III beta subunit, N-terminal domain SYN_02050 PF02767 DNA polymerase III beta subunit, central domain SYN_02051 PF00308 Bacterial dnaA protein SYN_02051 PF08299 Bacterial dnaA protein helix-turn-helix SYN_02051 PF11638 DnaA N-terminal domain SYN_02053 PF13614 AAA domain SYN_02054 PF02527 rRNA small subunit methyltransferase G SYN_02055 PF00588 SpoU rRNA Methylase family SYN_02056 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SYN_02057 PF02348 Cytidylyltransferase SYN_02058 PF12801 4Fe-4S binding domain SYN_02065 PF00005 ABC transporter SYN_02066 PF13533 Biotin-lipoyl like SYN_02068 PF02470 MlaD protein SYN_02069 PF00005 ABC transporter SYN_02070 PF02405 Permease MlaE SYN_02071 PF12419 SNF2 Helicase protein SYN_02071 PF00271 Helicase conserved C-terminal domain SYN_02071 PF00176 SNF2 family N-terminal domain SYN_02073 PF02321 Outer membrane efflux protein SYN_02074 PF00873 AcrB/AcrD/AcrF family SYN_02075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SYN_02075 PF00529 HlyD membrane-fusion protein of T1SS SYN_02076 PF00440 Bacterial regulatory proteins, tetR family SYN_02076 PF16295 Tetracyclin repressor-like, C-terminal domain SYN_02078 PF03749 Sugar fermentation stimulation protein RE domain SYN_02078 PF17746 SfsA N-terminal OB domain SYN_02080 PF01515 Phosphate acetyl/butaryl transferase SYN_02081 PF01515 Phosphate acetyl/butaryl transferase SYN_02088 PF00633 Helix-hairpin-helix motif SYN_02088 PF14815 NUDIX domain SYN_02088 PF00730 HhH-GPD superfamily base excision DNA repair protein SYN_02089 PF00085 Thioredoxin SYN_02096 PF02874 ATP synthase alpha/beta family, beta-barrel domain SYN_02096 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_02097 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_02097 PF02874 ATP synthase alpha/beta family, beta-barrel domain SYN_02098 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SYN_02101 PF00119 ATP synthase A chain SYN_02102 PF00137 ATP synthase subunit C SYN_02103 PF00430 ATP synthase B/B' CF(0) SYN_02104 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SYN_02104 PF00306 ATP synthase alpha/beta chain, C terminal domain SYN_02104 PF02874 ATP synthase alpha/beta family, beta-barrel domain SYN_02105 PF00231 ATP synthase SYN_02108 PF17932 Tetracyclin repressor-like, C-terminal domain SYN_02108 PF00440 Bacterial regulatory proteins, tetR family SYN_02110 PF05736 OprF membrane domain SYN_02110 PF00691 OmpA family SYN_02112 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_02112 PF13380 CoA binding domain SYN_02112 PF00583 Acetyltransferase (GNAT) family SYN_02114 PF08000 Bacterial PH domain SYN_02116 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SYN_02116 PF00749 tRNA synthetases class I (E and Q), catalytic domain SYN_02118 PF02769 AIR synthase related protein, C-terminal domain SYN_02118 PF00586 AIR synthase related protein, N-terminal domain SYN_02121 PF03466 LysR substrate binding domain SYN_02121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SYN_02122 PF00291 Pyridoxal-phosphate dependent enzyme SYN_02122 PF14821 Threonine synthase N terminus SYN_02123 PF01613 Flavin reductase like domain SYN_02123 PF00301 Rubredoxin SYN_02125 PF04324 BFD-like [2Fe-2S] binding domain SYN_02125 PF01106 NifU-like domain SYN_02125 PF01592 NifU-like N terminal domain SYN_02126 PF00266 Aminotransferase class-V SYN_02128 PF02770 Acyl-CoA dehydrogenase, middle domain SYN_02128 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SYN_02128 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SYN_02130 PF02535 ZIP Zinc transporter SYN_02133 PF06968 Biotin and Thiamin Synthesis associated domain SYN_02133 PF04055 Radical SAM superfamily SYN_02134 PF06968 Biotin and Thiamin Synthesis associated domain SYN_02134 PF04055 Radical SAM superfamily SYN_02137 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SYN_02137 PF01568 Molydopterin dinucleotide binding domain SYN_02137 PF00384 Molybdopterin oxidoreductase SYN_02137 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_02137 PF12838 4Fe-4S dicluster domain SYN_02138 PF01568 Molydopterin dinucleotide binding domain SYN_02138 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SYN_02138 PF00384 Molybdopterin oxidoreductase SYN_02139 PF10531 SLBB domain SYN_02139 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SYN_02139 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_02140 PF07690 Major Facilitator Superfamily SYN_02145 PF11741 AMIN domain SYN_02145 PF01520 N-acetylmuramoyl-L-alanine amidase SYN_02149 PF04055 Radical SAM superfamily SYN_02149 PF00919 Uncharacterized protein family UPF0004 SYN_02149 PF01938 TRAM domain SYN_02150 PF02577 Bifunctional nuclease SYN_02151 PF00589 Phage integrase family SYN_02151 PF02899 Phage integrase, N-terminal SAM-like domain SYN_02152 PF00227 Proteasome subunit SYN_02153 PF07724 AAA domain (Cdc48 subfamily) SYN_02153 PF00004 ATPase family associated with various cellular activities (AAA) SYN_02154 PF00696 Amino acid kinase family SYN_02155 PF00202 Aminotransferase class-III SYN_02156 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SYN_02156 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SYN_02157 PF00764 Arginosuccinate synthase SYN_02158 PF00206 Lyase SYN_02158 PF14698 Argininosuccinate lyase C-terminal SYN_02160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SYN_02160 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SYN_02161 PF00701 Dihydrodipicolinate synthetase family SYN_02162 PF05173 Dihydrodipicolinate reductase, C-terminus SYN_02162 PF01113 Dihydrodipicolinate reductase, N-terminus SYN_02163 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SYN_02165 PF00923 Transaldolase/Fructose-6-phosphate aldolase SYN_02166 PF01066 CDP-alcohol phosphatidyltransferase SYN_02170 PF02789 Cytosol aminopeptidase family, N-terminal domain SYN_02170 PF00883 Cytosol aminopeptidase family, catalytic domain SYN_02171 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SYN_02171 PF00005 ABC transporter SYN_02172 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SYN_02172 PF00005 ABC transporter SYN_02173 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SYN_02175 PF00313 'Cold-shock' DNA-binding domain SYN_02176 PF08497 Radical SAM N-terminal SYN_02176 PF04055 Radical SAM superfamily SYN_02176 PF11842 Domain of unknown function (DUF3362) SYN_02177 PF02441 Flavoprotein SYN_02177 PF04127 DNA / pantothenate metabolism flavoprotein SYN_02178 PF03167 Uracil DNA glycosylase superfamily SYN_02180 PF01145 SPFH domain / Band 7 family SYN_02184 PF03734 L,D-transpeptidase catalytic domain SYN_02184 PF17969 L,D-transpeptidase C-terminal domain SYN_02186 PF06969 HemN C-terminal domain SYN_02186 PF04055 Radical SAM superfamily SYN_02187 PF06421 GTP-binding protein LepA C-terminus SYN_02187 PF00009 Elongation factor Tu GTP binding domain SYN_02187 PF14492 Elongation Factor G, domain II SYN_02187 PF00679 Elongation factor G C-terminus SYN_02187 PF03144 Elongation factor Tu domain 2 SYN_02189 PF01668 SmpB protein SYN_02190 PF01171 PP-loop family SYN_02191 PF09106 Elongation factor SelB, winged helix SYN_02191 PF00009 Elongation factor Tu GTP binding domain SYN_02191 PF09107 Elongation factor SelB, winged helix SYN_02191 PF03144 Elongation factor Tu domain 2 SYN_02192 PF01966 HD domain SYN_02194 PF08502 LeuA allosteric (dimerisation) domain SYN_02194 PF00682 HMGL-like SYN_02195 PF01300 Telomere recombination SYN_02196 PF12111 Polyribonucleotide phosphorylase C terminal SYN_02196 PF10150 Ribonuclease E/G family SYN_02196 PF00575 S1 RNA binding domain SYN_02197 PF03807 NADP oxidoreductase coenzyme F420-dependent SYN_02197 PF14748 Pyrroline-5-carboxylate reductase dimerisation SYN_02199 PF01435 Peptidase family M48 SYN_02201 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_02201 PF10371 Domain of unknown function SYN_02201 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SYN_02201 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SYN_02201 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SYN_02208 PF02421 Ferrous iron transport protein B SYN_02208 PF07670 Nucleoside recognition SYN_02208 PF17910 FeoB cytosolic helical domain SYN_02208 PF07664 Ferrous iron transport protein B C terminus SYN_02208 PF04023 FeoA domain SYN_02211 PF00909 Ammonium Transporter Family SYN_02212 PF00543 Nitrogen regulatory protein P-II SYN_02213 PF08448 PAS fold SYN_02213 PF00072 Response regulator receiver domain SYN_02213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02213 PF00512 His Kinase A (phospho-acceptor) domain SYN_02213 PF13188 PAS domain SYN_02214 PF00072 Response regulator receiver domain SYN_02214 PF00158 Sigma-54 interaction domain SYN_02214 PF02954 Bacterial regulatory protein, Fis family SYN_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02215 PF00512 His Kinase A (phospho-acceptor) domain SYN_02218 PF00690 Cation transporter/ATPase, N-terminus SYN_02218 PF00689 Cation transporting ATPase, C-terminus SYN_02220 PF00175 Oxidoreductase NAD-binding domain SYN_02220 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SYN_02221 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SYN_02222 PF00374 Nickel-dependent hydrogenase SYN_02224 PF00005 ABC transporter SYN_02225 PF00528 Binding-protein-dependent transport system inner membrane component SYN_02226 PF12849 PBP superfamily domain SYN_02227 PF02899 Phage integrase, N-terminal SAM-like domain SYN_02227 PF00589 Phage integrase family SYN_02229 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SYN_02231 PF09587 Bacterial capsule synthesis protein PGA_cap SYN_02232 PF01950 Fructose-1,6-bisphosphatase SYN_02239 PF09827 CRISPR associated protein Cas2 SYN_02241 PF01867 CRISPR associated protein Cas1 SYN_02256 PF00793 DAHP synthetase I family SYN_02257 PF00128 Alpha amylase, catalytic domain SYN_02257 PF02806 Alpha amylase, C-terminal all-beta domain SYN_02257 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SYN_02258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02258 PF08448 PAS fold SYN_02258 PF13188 PAS domain SYN_02258 PF00072 Response regulator receiver domain SYN_02258 PF00512 His Kinase A (phospho-acceptor) domain SYN_02260 PF00768 D-alanyl-D-alanine carboxypeptidase SYN_02260 PF07943 Penicillin-binding protein 5, C-terminal domain SYN_02261 PF00476 DNA polymerase family A SYN_02261 PF01367 5'-3' exonuclease, C-terminal SAM fold SYN_02261 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SYN_02261 PF01612 3'-5' exonuclease SYN_02264 PF02872 5'-nucleotidase, C-terminal domain SYN_02264 PF00149 Calcineurin-like phosphoesterase SYN_02266 PF13186 Iron-sulfur cluster-binding domain SYN_02266 PF04055 Radical SAM superfamily SYN_02267 PF00490 Delta-aminolevulinic acid dehydratase SYN_02268 PF04055 Radical SAM superfamily SYN_02268 PF13186 Iron-sulfur cluster-binding domain SYN_02270 PF01699 Sodium/calcium exchanger protein SYN_02273 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SYN_02273 PF03900 Porphobilinogen deaminase, C-terminal domain SYN_02274 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SYN_02274 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SYN_02274 PF01488 Shikimate / quinate 5-dehydrogenase SYN_02276 PF10414 Sirohaem synthase dimerisation region SYN_02276 PF14824 Sirohaem biosynthesis protein central SYN_02276 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SYN_02278 PF04452 RNA methyltransferase SYN_02280 PF06271 RDD family SYN_02298 PF10124 Mu-like prophage major head subunit gpT SYN_02301 PF05069 Phage virion morphogenesis family SYN_02303 PF06074 Protein of unknown function (DUF935) SYN_02339 PF00512 His Kinase A (phospho-acceptor) domain SYN_02339 PF08448 PAS fold SYN_02339 PF13426 PAS domain SYN_02339 PF00072 Response regulator receiver domain SYN_02339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02354 PF01569 PAP2 superfamily SYN_02356 PF01740 STAS domain SYN_02357 PF13581 Histidine kinase-like ATPase domain SYN_02359 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain SYN_02359 PF07228 Stage II sporulation protein E (SpoIIE) SYN_02360 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SYN_02360 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SYN_02362 PF02620 Large ribosomal RNA subunit accumulation protein YceD SYN_02363 PF01783 Ribosomal L32p protein family SYN_02364 PF00550 Phosphopantetheine attachment site SYN_02365 PF02801 Beta-ketoacyl synthase, C-terminal domain SYN_02365 PF00109 Beta-ketoacyl synthase, N-terminal domain SYN_02366 PF02502 Ribose/Galactose Isomerase SYN_02367 PF00464 Serine hydroxymethyltransferase SYN_02369 PF03477 ATP cone domain SYN_02370 PF00677 Lumazine binding domain SYN_02371 PF00925 GTP cyclohydrolase II SYN_02371 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SYN_02372 PF00885 6,7-dimethyl-8-ribityllumazine synthase SYN_02373 PF01029 NusB family SYN_02374 PF13603 Leucyl-tRNA synthetase, Domain 2 SYN_02374 PF09334 tRNA synthetases class I (M) SYN_02374 PF08264 Anticodon-binding domain of tRNA SYN_02374 PF00133 tRNA synthetases class I (I, L, M and V) SYN_02376 PF01649 Ribosomal protein S20 SYN_02377 PF02617 ATP-dependent Clp protease adaptor protein ClpS SYN_02378 PF10431 C-terminal, D2-small domain, of ClpB protein SYN_02378 PF02861 Clp amino terminal domain, pathogenicity island component SYN_02378 PF17871 AAA lid domain SYN_02378 PF07724 AAA domain (Cdc48 subfamily) SYN_02378 PF00004 ATPase family associated with various cellular activities (AAA) SYN_02379 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SYN_02380 PF13188 PAS domain SYN_02380 PF00989 PAS fold SYN_02380 PF13426 PAS domain SYN_02380 PF00512 His Kinase A (phospho-acceptor) domain SYN_02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02382 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SYN_02382 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SYN_02391 PF00535 Glycosyl transferase family 2 SYN_02393 PF04371 Porphyromonas-type peptidyl-arginine deiminase SYN_02394 PF02673 Bacitracin resistance protein BacA SYN_02396 PF06628 Catalase-related immune-responsive SYN_02396 PF00199 Catalase SYN_02397 PF01475 Ferric uptake regulator family SYN_02398 PF00425 chorismate binding enzyme SYN_02399 PF16582 Middle domain of thiamine pyrophosphate SYN_02399 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_02399 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SYN_02400 PF00378 Enoyl-CoA hydratase/isomerase SYN_02403 PF17243 POTRA domain TamA domain 1 SYN_02403 PF01103 Surface antigen SYN_02416 PF00440 Bacterial regulatory proteins, tetR family SYN_02417 PF00501 AMP-binding enzyme SYN_02417 PF13193 AMP-binding enzyme C-terminal domain SYN_02421 PF02754 Cysteine-rich domain SYN_02421 PF13183 4Fe-4S dicluster domain SYN_02422 PF01266 FAD dependent oxidoreductase SYN_02422 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SYN_02423 PF01266 FAD dependent oxidoreductase SYN_02423 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SYN_02426 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SYN_02426 PF00037 4Fe-4S binding domain SYN_02426 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SYN_02427 PF02906 Iron only hydrogenase large subunit, C-terminal domain SYN_02427 PF02256 Iron hydrogenase small subunit SYN_02427 PF00037 4Fe-4S binding domain SYN_02427 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SYN_02430 PF00271 Helicase conserved C-terminal domain SYN_02430 PF00270 DEAD/DEAH box helicase SYN_02432 PF00313 'Cold-shock' DNA-binding domain SYN_02434 PF00561 alpha/beta hydrolase fold SYN_02436 PF01207 Dihydrouridine synthase (Dus) SYN_02437 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_02437 PF12804 MobA-like NTP transferase domain SYN_02439 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SYN_02439 PF02844 Phosphoribosylglycinamide synthetase, N domain SYN_02439 PF02843 Phosphoribosylglycinamide synthetase, C domain SYN_02440 PF01808 AICARFT/IMPCHase bienzyme SYN_02440 PF02142 MGS-like domain SYN_02442 PF00731 AIR carboxylase SYN_02443 PF01300 Telomere recombination SYN_02443 PF03481 Putative GTP-binding controlling metal-binding SYN_02445 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal SYN_02445 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal SYN_02446 PF01266 FAD dependent oxidoreductase SYN_02447 PF07992 Pyridine nucleotide-disulphide oxidoreductase SYN_02447 PF04324 BFD-like [2Fe-2S] binding domain SYN_02452 PF01106 NifU-like domain SYN_02454 PF02401 LytB protein SYN_02455 PF01479 S4 domain SYN_02455 PF01728 FtsJ-like methyltransferase SYN_02456 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SYN_02456 PF02780 Transketolase, C-terminal domain SYN_02456 PF02779 Transketolase, pyrimidine binding domain SYN_02457 PF00348 Polyprenyl synthetase SYN_02458 PF02609 Exonuclease VII small subunit SYN_02459 PF02601 Exonuclease VII, large subunit SYN_02459 PF13742 OB-fold nucleic acid binding domain SYN_02461 PF01916 Deoxyhypusine synthase SYN_02472 PF09827 CRISPR associated protein Cas2 SYN_02473 PF01867 CRISPR associated protein Cas1 SYN_02481 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SYN_02485 PF00690 Cation transporter/ATPase, N-terminus SYN_02485 PF00689 Cation transporting ATPase, C-terminus SYN_02486 PF17760 UvrA interaction domain SYN_02486 PF17755 UvrA DNA-binding domain SYN_02486 PF00005 ABC transporter SYN_02487 PF00639 PPIC-type PPIASE domain SYN_02487 PF09312 SurA N-terminal domain SYN_02488 PF00313 'Cold-shock' DNA-binding domain SYN_02492 PF00301 Rubredoxin SYN_02494 PF07311 Dodecin SYN_02498 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SYN_02498 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SYN_02498 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SYN_02499 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_02501 PF00549 CoA-ligase SYN_02501 PF08442 ATP-grasp domain SYN_02502 PF02629 CoA binding domain SYN_02502 PF00549 CoA-ligase SYN_02520 PF13380 CoA binding domain SYN_02523 PF02915 Rubrerythrin SYN_02525 PF00004 ATPase family associated with various cellular activities (AAA) SYN_02525 PF07724 AAA domain (Cdc48 subfamily) SYN_02525 PF17871 AAA lid domain SYN_02525 PF02861 Clp amino terminal domain, pathogenicity island component SYN_02525 PF10431 C-terminal, D2-small domain, of ClpB protein SYN_02526 PF02615 Malate/L-lactate dehydrogenase SYN_02528 PF04055 Radical SAM superfamily SYN_02528 PF13186 Iron-sulfur cluster-binding domain SYN_02529 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SYN_02529 PF02272 DHHA1 domain SYN_02529 PF01368 DHH family SYN_02529 PF17768 RecJ OB domain SYN_02530 PF00072 Response regulator receiver domain SYN_02530 PF02954 Bacterial regulatory protein, Fis family SYN_02530 PF00158 Sigma-54 interaction domain SYN_02531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02531 PF00512 His Kinase A (phospho-acceptor) domain SYN_02531 PF00989 PAS fold SYN_02533 PF12706 Beta-lactamase superfamily domain SYN_02534 PF13393 Histidyl-tRNA synthetase SYN_02534 PF03129 Anticodon binding domain SYN_02535 PF01336 OB-fold nucleic acid binding domain SYN_02535 PF02938 GAD domain SYN_02535 PF00152 tRNA synthetases class II (D, K and N) SYN_02536 PF00682 HMGL-like SYN_02537 PF13361 UvrD-like helicase C-terminal domain SYN_02537 PF00580 UvrD/REP helicase N-terminal domain SYN_02538 PF05191 Adenylate kinase, active site lid SYN_02539 PF13508 Acetyltransferase (GNAT) domain SYN_02539 PF00583 Acetyltransferase (GNAT) family SYN_02541 PF03631 Virulence factor BrkB SYN_02543 PF00990 Diguanylate cyclase, GGDEF domain SYN_02544 PF00582 Universal stress protein family SYN_02551 PF13538 UvrD-like helicase C-terminal domain SYN_02552 PF12705 PD-(D/E)XK nuclease superfamily SYN_02552 PF00580 UvrD/REP helicase N-terminal domain SYN_02552 PF13361 UvrD-like helicase C-terminal domain SYN_02553 PF17946 RecC C-terminal domain SYN_02557 PF00749 tRNA synthetases class I (E and Q), catalytic domain SYN_02559 PF02915 Rubrerythrin SYN_02561 PF05736 OprF membrane domain SYN_02561 PF00691 OmpA family SYN_02563 PF00202 Aminotransferase class-III SYN_02564 PF00550 Phosphopantetheine attachment site SYN_02565 PF00881 Nitroreductase family SYN_02566 PF02801 Beta-ketoacyl synthase, C-terminal domain SYN_02566 PF00109 Beta-ketoacyl synthase, N-terminal domain SYN_02568 PF00155 Aminotransferase class I and II SYN_02570 PF00990 Diguanylate cyclase, GGDEF domain SYN_02570 PF00563 EAL domain SYN_02570 PF03707 Bacterial signalling protein N terminal repeat SYN_02572 PF00004 ATPase family associated with various cellular activities (AAA) SYN_02572 PF05362 Lon protease (S16) C-terminal proteolytic domain SYN_02572 PF02190 ATP-dependent protease La (LON) substrate-binding domain SYN_02576 PF13188 PAS domain SYN_02576 PF00072 Response regulator receiver domain SYN_02576 PF08448 PAS fold SYN_02576 PF00512 His Kinase A (phospho-acceptor) domain SYN_02576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02578 PF00809 Pterin binding enzyme SYN_02581 PF13188 PAS domain SYN_02581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02581 PF00512 His Kinase A (phospho-acceptor) domain SYN_02581 PF08448 PAS fold SYN_02581 PF00072 Response regulator receiver domain SYN_02583 PF11700 Vacuole effluxer Atg22 like SYN_02584 PF00570 HRDC domain SYN_02584 PF16124 RecQ zinc-binding SYN_02584 PF09382 RQC domain SYN_02584 PF00270 DEAD/DEAH box helicase SYN_02584 PF00271 Helicase conserved C-terminal domain SYN_02585 PF13426 PAS domain SYN_02585 PF00158 Sigma-54 interaction domain SYN_02585 PF02954 Bacterial regulatory protein, Fis family SYN_02586 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SYN_02586 PF02770 Acyl-CoA dehydrogenase, middle domain SYN_02586 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SYN_02587 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SYN_02587 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SYN_02587 PF02770 Acyl-CoA dehydrogenase, middle domain SYN_02588 PF00196 Bacterial regulatory proteins, luxR family SYN_02588 PF00072 Response regulator receiver domain SYN_02589 PF02142 MGS-like domain SYN_02589 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SYN_02589 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SYN_02591 PF00218 Indole-3-glycerol phosphate synthase SYN_02592 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SYN_02593 PF00512 His Kinase A (phospho-acceptor) domain SYN_02593 PF08448 PAS fold SYN_02593 PF13426 PAS domain SYN_02593 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02593 PF00072 Response regulator receiver domain SYN_02594 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SYN_02594 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SYN_02597 PF01144 Coenzyme A transferase SYN_02599 PF00580 UvrD/REP helicase N-terminal domain SYN_02599 PF13361 UvrD-like helicase C-terminal domain SYN_02600 PF11897 Protein of unknown function (DUF3417) SYN_02600 PF00343 Carbohydrate phosphorylase SYN_02602 PF01336 OB-fold nucleic acid binding domain SYN_02602 PF00152 tRNA synthetases class II (D, K and N) SYN_02602 PF02938 GAD domain SYN_02603 PF01425 Amidase SYN_02604 PF02637 GatB domain SYN_02604 PF02934 GatB/GatE catalytic domain SYN_02607 PF13380 CoA binding domain SYN_02607 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_02607 PF00583 Acetyltransferase (GNAT) family SYN_02609 PF13380 CoA binding domain SYN_02609 PF00583 Acetyltransferase (GNAT) family SYN_02609 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_02614 PF03063 Prismane/CO dehydrogenase family SYN_02616 PF02335 Cytochrome c552 SYN_02617 PF02386 Cation transport protein SYN_02618 PF02254 TrkA-N domain SYN_02618 PF02080 TrkA-C domain SYN_02620 PF00501 AMP-binding enzyme SYN_02620 PF13193 AMP-binding enzyme C-terminal domain SYN_02621 PF12697 Alpha/beta hydrolase family SYN_02623 PF01476 LysM domain SYN_02623 PF08525 Opacity-associated protein A N-terminal motif SYN_02623 PF01551 Peptidase family M23 SYN_02626 PF00534 Glycosyl transferases group 1 SYN_02627 PF02358 Trehalose-phosphatase SYN_02628 PF00982 Glycosyltransferase family 20 SYN_02629 PF00924 Mechanosensitive ion channel SYN_02630 PF00128 Alpha amylase, catalytic domain SYN_02631 PF05552 Conserved TM helix SYN_02632 PF13406 Transglycosylase SLT domain SYN_02634 PF12544 Lysine-2,3-aminomutase SYN_02634 PF04055 Radical SAM superfamily SYN_02635 PF00501 AMP-binding enzyme SYN_02635 PF16177 Acetyl-coenzyme A synthetase N-terminus SYN_02635 PF13193 AMP-binding enzyme C-terminal domain SYN_02636 PF01012 Electron transfer flavoprotein domain SYN_02637 PF00766 Electron transfer flavoprotein FAD-binding domain SYN_02637 PF01012 Electron transfer flavoprotein domain SYN_02638 PF02665 Nitrate reductase gamma subunit SYN_02638 PF02754 Cysteine-rich domain SYN_02638 PF13183 4Fe-4S dicluster domain SYN_02640 PF00501 AMP-binding enzyme SYN_02640 PF13193 AMP-binding enzyme C-terminal domain SYN_02641 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase SYN_02641 PF01676 Metalloenzyme superfamily SYN_02642 PF00108 Thiolase, N-terminal domain SYN_02642 PF02803 Thiolase, C-terminal domain SYN_02643 PF00501 AMP-binding enzyme SYN_02643 PF13193 AMP-binding enzyme C-terminal domain SYN_02647 PF00483 Nucleotidyl transferase SYN_02648 PF16363 GDP-mannose 4,6 dehydratase SYN_02649 PF00483 Nucleotidyl transferase SYN_02650 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SYN_02651 PF08421 Putative zinc binding domain SYN_02651 PF08484 C-methyltransferase C-terminal domain SYN_02652 PF01370 NAD dependent epimerase/dehydratase family SYN_02654 PF04989 Cephalosporin hydroxylase SYN_02656 PF14524 Wzt C-terminal domain SYN_02656 PF00005 ABC transporter SYN_02659 PF00535 Glycosyl transferase family 2 SYN_02660 PF00535 Glycosyl transferase family 2 SYN_02661 PF01370 NAD dependent epimerase/dehydratase family SYN_02664 PF01531 Glycosyl transferase family 11 SYN_02665 PF00535 Glycosyl transferase family 2 SYN_02666 PF00733 Asparagine synthase SYN_02666 PF13537 Glutamine amidotransferase domain SYN_02667 PF00534 Glycosyl transferases group 1 SYN_02667 PF13439 Glycosyltransferase Family 4 SYN_02669 PF00953 Glycosyl transferase family 4 SYN_02670 PF02719 Polysaccharide biosynthesis protein SYN_02671 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SYN_02675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SYN_02675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SYN_02675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SYN_02677 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SYN_02677 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SYN_02678 PF13537 Glutamine amidotransferase domain SYN_02678 PF00733 Asparagine synthase SYN_02682 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SYN_02682 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SYN_02683 PF02350 UDP-N-acetylglucosamine 2-epimerase SYN_02686 PF02397 Bacterial sugar transferase SYN_02687 PF00132 Bacterial transferase hexapeptide (six repeats) SYN_02687 PF12464 Maltose acetyltransferase SYN_02688 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SYN_02689 PF02719 Polysaccharide biosynthesis protein SYN_02690 PF06082 Exopolysaccharide biosynthesis protein YbjH SYN_02692 PF08681 Protein of unknown function (DUF1778) SYN_02699 PF00155 Aminotransferase class I and II SYN_02700 PF01612 3'-5' exonuclease SYN_02700 PF00570 HRDC domain SYN_02701 PF01416 tRNA pseudouridine synthase SYN_02703 PF00809 Pterin binding enzyme SYN_02703 PF02310 B12 binding domain SYN_02703 PF02574 Homocysteine S-methyltransferase SYN_02703 PF02965 Vitamin B12 dependent methionine synthase, activation domain SYN_02703 PF02607 B12 binding domain SYN_02704 PF05209 Septum formation inhibitor MinC, N-terminal domain SYN_02704 PF03775 Septum formation inhibitor MinC, C-terminal domain SYN_02705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SYN_02706 PF03776 Septum formation topological specificity factor MinE SYN_02707 PF00551 Formyl transferase SYN_02707 PF02911 Formyl transferase, C-terminal domain SYN_02708 PF01029 NusB family SYN_02708 PF01189 16S rRNA methyltransferase RsmB/F SYN_02709 PF00753 Metallo-beta-lactamase superfamily SYN_02710 PF01259 SAICAR synthetase SYN_02711 PF01556 DnaJ C terminal domain SYN_02711 PF00684 DnaJ central domain SYN_02711 PF00226 DnaJ domain SYN_02713 PF02954 Bacterial regulatory protein, Fis family SYN_02713 PF00072 Response regulator receiver domain SYN_02713 PF00158 Sigma-54 interaction domain SYN_02714 PF00672 HAMP domain SYN_02714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SYN_02714 PF00512 His Kinase A (phospho-acceptor) domain SYN_02714 PF00989 PAS fold SYN_02721 PF01966 HD domain SYN_02722 PF00990 Diguanylate cyclase, GGDEF domain SYN_02722 PF05231 MASE1 SYN_02722 PF13426 PAS domain SYN_02722 PF08448 PAS fold SYN_02722 PF00563 EAL domain SYN_02722 PF08447 PAS fold SYN_02726 PF01979 Amidohydrolase family SYN_02726 PF13382 Adenine deaminase C-terminal domain SYN_02732 PF07804 HipA-like C-terminal domain SYN_02732 PF13657 HipA N-terminal domain SYN_02733 PF01381 Helix-turn-helix SYN_02739 PF03747 ADP-ribosylglycohydrolase SYN_02755 PF00270 DEAD/DEAH box helicase SYN_02755 PF17191 RecG wedge domain SYN_02755 PF13749 Putative ATP-dependent DNA helicase recG C-terminal SYN_02758 PF02445 Quinolinate synthetase A protein SYN_02759 PF02559 CarD-like/TRCF domain SYN_02759 PF03461 TRCF domain SYN_02759 PF00270 DEAD/DEAH box helicase SYN_02759 PF17757 UvrB interaction domain SYN_02759 PF00271 Helicase conserved C-terminal domain SYN_02760 PF00689 Cation transporting ATPase, C-terminus SYN_02760 PF00690 Cation transporter/ATPase, N-terminus SYN_02761 PF00343 Carbohydrate phosphorylase SYN_02761 PF11897 Protein of unknown function (DUF3417) SYN_02762 PF02457 DisA bacterial checkpoint controller nucleotide-binding SYN_02763 PF01544 CorA-like Mg2+ transporter protein SYN_02764 PF01613 Flavin reductase like domain SYN_02766 PF01965 DJ-1/PfpI family SYN_02767 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SYN_02767 PF14572 Phosphoribosyl synthetase-associated domain SYN_02768 PF14693 Ribosomal protein TL5, C-terminal domain SYN_02768 PF01386 Ribosomal L25p family SYN_02769 PF01195 Peptidyl-tRNA hydrolase SYN_02770 PF03030 Inorganic H+ pyrophosphatase SYN_02772 PF03030 Inorganic H+ pyrophosphatase SYN_02773 PF02548 Ketopantoate hydroxymethyltransferase SYN_02775 PF13419 Haloacid dehalogenase-like hydrolase SYN_02777 PF00004 ATPase family associated with various cellular activities (AAA) SYN_02777 PF17862 AAA+ lid domain SYN_02777 PF01434 Peptidase family M41 SYN_02777 PF06480 FtsH Extracellular SYN_02778 PF00809 Pterin binding enzyme SYN_02779 PF01648 4'-phosphopantetheinyl transferase superfamily SYN_02780 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SYN_02781 PF00696 Amino acid kinase family SYN_02781 PF13840 ACT domain SYN_02781 PF01842 ACT domain SYN_02782 PF10531 SLBB domain SYN_02783 PF01464 Transglycosylase SLT domain SYN_02784 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SYN_02784 PF05697 Bacterial trigger factor protein (TF) SYN_02784 PF05698 Bacterial trigger factor protein (TF) C-terminus SYN_02785 PF00574 Clp protease SYN_02787 PF02190 ATP-dependent protease La (LON) substrate-binding domain SYN_02787 PF00004 ATPase family associated with various cellular activities (AAA) SYN_02787 PF05362 Lon protease (S16) C-terminal proteolytic domain SYN_02789 PF00795 Carbon-nitrogen hydrolase SYN_02790 PF00472 RF-1 domain SYN_02790 PF03462 PCRF domain SYN_02791 PF01464 Transglycosylase SLT domain SYN_02791 PF01476 LysM domain SYN_02792 PF02130 Uncharacterized protein family UPF0054 SYN_02793 PF01966 HD domain SYN_02793 PF07697 7TM-HD extracellular SYN_02793 PF07698 7TM receptor with intracellular HD hydrolase SYN_02794 PF02562 PhoH-like protein SYN_02795 PF07687 Peptidase dimerisation domain SYN_02795 PF01546 Peptidase family M20/M25/M40 SYN_02796 PF05193 Peptidase M16 inactive domain SYN_02797 PF17782 DprA winged helix domain SYN_02797 PF02481 DNA recombination-mediator protein A SYN_02798 PF01131 DNA topoisomerase SYN_02798 PF01751 Toprim domain SYN_02798 PF01396 Topoisomerase DNA binding C4 zinc finger SYN_02799 PF01134 Glucose inhibited division protein A SYN_02800 PF01464 Transglycosylase SLT domain SYN_02801 PF01966 HD domain SYN_02802 PF08241 Methyltransferase domain SYN_02803 PF00535 Glycosyl transferase family 2 SYN_02803 PF13181 Tetratricopeptide repeat SYN_02804 PF00700 Bacterial flagellin C-terminal helical region SYN_02804 PF00669 Bacterial flagellin N-terminal helical region SYN_02806 PF02561 Flagellar protein FliS SYN_02809 PF02623 FliW protein SYN_02810 PF02599 Global regulator protein family SYN_02811 PF00700 Bacterial flagellin C-terminal helical region SYN_02811 PF00669 Bacterial flagellin N-terminal helical region SYN_02812 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SYN_02812 PF00460 Flagella basal body rod protein SYN_02816 PF02119 Flagellar P-ring protein SYN_02817 PF02107 Flagellar L-ring protein SYN_02818 PF13144 Chaperone for flagella basal body P-ring formation SYN_02819 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SYN_02819 PF00460 Flagella basal body rod protein SYN_02820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SYN_02821 PF01312 FlhB HrpN YscU SpaS Family SYN_02827 PF04539 Sigma-70 region 3 SYN_02827 PF04542 Sigma-70 region 2 SYN_02827 PF04545 Sigma-70, region 4 SYN_02828 PF10609 NUBPL iron-transfer P-loop NTPase SYN_02829 PF00448 SRP54-type protein, GTPase domain SYN_02830 PF00771 FHIPEP family SYN_02832 PF01312 FlhB HrpN YscU SpaS Family SYN_02833 PF01311 Bacterial export proteins, family 1 SYN_02834 PF01313 Bacterial export proteins, family 3 SYN_02835 PF00813 FliP family SYN_02836 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SYN_02836 PF04509 CheC-like family SYN_02837 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SYN_02837 PF02154 Flagellar motor switch protein FliM SYN_02839 PF07559 Flagellar basal body protein FlaE SYN_02839 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SYN_02839 PF00460 Flagella basal body rod protein SYN_02845 PF03830 PTS system sorbose subfamily IIB component SYN_02847 PF00583 Acetyltransferase (GNAT) family SYN_02848 PF00970 Oxidoreductase FAD-binding domain SYN_02848 PF00175 Oxidoreductase NAD-binding domain SYN_02848 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SYN_02850 PF01180 Dihydroorotate dehydrogenase SYN_02851 PF00753 Metallo-beta-lactamase superfamily SYN_02852 PF11898 Domain of unknown function (DUF3418) SYN_02852 PF00270 DEAD/DEAH box helicase SYN_02852 PF04408 Helicase associated domain (HA2) SYN_02852 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SYN_02852 PF00271 Helicase conserved C-terminal domain SYN_02853 PF12633 Adenylate cyclase NT domain SYN_02853 PF01295 Adenylate cyclase, class-I SYN_02856 PF00849 RNA pseudouridylate synthase SYN_02856 PF01479 S4 domain SYN_02857 PF00579 tRNA synthetases class I (W and Y) SYN_02859 PF00216 Bacterial DNA-binding protein SYN_02862 PF02463 RecF/RecN/SMC N terminal domain SYN_02863 PF01513 ATP-NAD kinase SYN_02866 PF16363 GDP-mannose 4,6 dehydratase SYN_02867 PF01458 Uncharacterized protein family (UPF0051) SYN_02869 PF01968 Hydantoinase/oxoprolinase SYN_02869 PF05378 Hydantoinase/oxoprolinase N-terminal region SYN_02870 PF00850 Histone deacetylase domain SYN_02873 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SYN_02873 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SYN_02876 PF01121 Dephospho-CoA kinase SYN_02878 PF13607 Succinyl-CoA ligase like flavodoxin domain SYN_02878 PF13380 CoA binding domain SYN_02878 PF00583 Acetyltransferase (GNAT) family SYN_02880 PF00343 Carbohydrate phosphorylase SYN_02883 PF03309 Type III pantothenate kinase SYN_02884 PF02237 Biotin protein ligase C terminal domain SYN_02884 PF08279 HTH domain SYN_02884 PF03099 Biotin/lipoate A/B protein ligase family SYN_02885 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SYN_02885 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SYN_02886 PF08264 Anticodon-binding domain of tRNA SYN_02886 PF10458 Valyl tRNA synthetase tRNA binding arm SYN_02886 PF00133 tRNA synthetases class I (I, L, M and V) SYN_02889 PF01119 DNA mismatch repair protein, C-terminal domain SYN_02889 PF08676 MutL C terminal dimerisation domain SYN_02892 PF16123 Hydroxyacylglutathione hydrolase C-terminus SYN_02892 PF00753 Metallo-beta-lactamase superfamily SYN_02896 PF13193 AMP-binding enzyme C-terminal domain SYN_02896 PF00501 AMP-binding enzyme SYN_02898 PF00501 AMP-binding enzyme SYN_02898 PF13193 AMP-binding enzyme C-terminal domain SYN_02899 PF00158 Sigma-54 interaction domain SYN_02903 PF00483 Nucleotidyl transferase SYN_02907 PF02463 RecF/RecN/SMC N terminal domain SYN_02908 PF13361 UvrD-like helicase C-terminal domain SYN_02908 PF00580 UvrD/REP helicase N-terminal domain SYN_02909 PF13195 Protein of unknown function (DUF4011) SYN_02909 PF13086 AAA domain SYN_02909 PF13087 AAA domain SYN_02918 PF00881 Nitroreductase family SYN_02919 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SYN_02920 PF12724 Flavodoxin domain SYN_02922 PF06418 CTP synthase N-terminus SYN_02922 PF00117 Glutamine amidotransferase class-I SYN_02923 PF01380 SIS domain SYN_02926 PF01967 MoaC family SYN_02930 PF03144 Elongation factor Tu domain 2 SYN_02930 PF00009 Elongation factor Tu GTP binding domain SYN_02930 PF00679 Elongation factor G C-terminus SYN_02930 PF03764 Elongation factor G, domain IV SYN_02930 PF14492 Elongation Factor G, domain II SYN_02931 PF00994 Probable molybdopterin binding domain SYN_02933 PF01230 HIT domain SYN_02935 PF00533 BRCA1 C Terminus (BRCT) domain SYN_02935 PF12826 Helix-hairpin-helix motif SYN_02935 PF03120 NAD-dependent DNA ligase OB-fold domain SYN_02935 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SYN_02935 PF01653 NAD-dependent DNA ligase adenylation domain SYN_02936 PF00708 Acylphosphatase SYN_02937 PF00155 Aminotransferase class I and II SYN_02943 PF01594 AI-2E family transporter SYN_02945 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_02945 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_02945 PF01610 Transposase SYN_02946 PF02321 Outer membrane efflux protein SYN_02947 PF00873 AcrB/AcrD/AcrF family SYN_02948 PF13533 Biotin-lipoyl like SYN_02950 PF00342 Phosphoglucose isomerase SYN_02951 PF02685 Glucokinase SYN_02952 PF00391 PEP-utilising enzyme, mobile domain SYN_02952 PF00224 Pyruvate kinase, barrel domain SYN_02952 PF02887 Pyruvate kinase, alpha/beta domain SYN_02953 PF00365 Phosphofructokinase SYN_02954 PF01116 Fructose-bisphosphate aldolase class-II SYN_02956 PF00158 Sigma-54 interaction domain SYN_02956 PF01590 GAF domain SYN_02958 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SYN_02959 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SYN_02959 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SYN_02959 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SYN_02959 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SYN_02961 PF01933 Uncharacterised protein family UPF0052 SYN_02965 PF00137 ATP synthase subunit C SYN_02966 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SYN_02966 PF02896 PEP-utilising enzyme, TIM barrel domain SYN_02966 PF00391 PEP-utilising enzyme, mobile domain SYN_02970 PF02677 Epoxyqueuosine reductase QueH SYN_02971 PF05496 Holliday junction DNA helicase RuvB P-loop domain SYN_02971 PF05491 RuvB C-terminal winged helix domain SYN_02971 PF17864 RuvB AAA lid domain SYN_02972 PF07499 RuvA, C-terminal domain SYN_02972 PF01330 RuvA N terminal domain SYN_02973 PF02075 Crossover junction endodeoxyribonuclease RuvC SYN_02974 PF01709 Transcriptional regulator SYN_02977 PF00579 tRNA synthetases class I (W and Y) SYN_02978 PF13277 YmdB-like protein SYN_02979 PF12072 Domain of unknown function (DUF3552) SYN_02979 PF00013 KH domain SYN_02979 PF01966 HD domain SYN_02981 PF05164 Cell division protein ZapA SYN_02983 PF00121 Triosephosphate isomerase SYN_02985 PF12169 DNA polymerase III subunits gamma and tau domain III SYN_02987 PF00872 Transposase, Mutator family SYN_02993 PF03063 Prismane/CO dehydrogenase family SYN_02995 PF01555 DNA methylase SYN_03003 PF04972 BON domain SYN_03005 PF03458 UPF0126 domain SYN_03008 PF02082 Transcriptional regulator SYN_03026 PF09190 DALR domain SYN_03026 PF01406 tRNA synthetases class I (C) catalytic domain SYN_03031 PF13614 AAA domain SYN_03032 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SYN_03032 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SYN_03036 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_03036 PF01610 Transposase SYN_03036 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_03042 PF01610 Transposase SYN_03042 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_03042 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_03045 PF08478 POTRA domain, FtsQ-type SYN_03045 PF03799 Cell division protein FtsQ SYN_03046 PF08544 GHMP kinases C terminal SYN_03046 PF00288 GHMP kinases N terminal domain SYN_03059 PF00037 4Fe-4S binding domain SYN_03061 PF07963 Prokaryotic N-terminal methylation motif SYN_03061 PF14245 Type IV pilin PilA SYN_03065 PF00872 Transposase, Mutator family SYN_03074 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_03074 PF01610 Transposase SYN_03074 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_03076 PF00378 Enoyl-CoA hydratase/isomerase SYN_03078 PF01384 Phosphate transporter family SYN_03090 PF00871 Acetokinase family SYN_03092 PF00872 Transposase, Mutator family SYN_03096 PF00578 AhpC/TSA family SYN_03102 PF00872 Transposase, Mutator family SYN_03108 PF00475 Imidazoleglycerol-phosphate dehydratase SYN_03109 PF01634 ATP phosphoribosyltransferase SYN_03109 PF08029 HisG, C-terminal domain SYN_03110 PF01502 Phosphoribosyl-AMP cyclohydrolase SYN_03115 PF08534 Redoxin SYN_03119 PF01050 Mannose-6-phosphate isomerase SYN_03119 PF00483 Nucleotidyl transferase SYN_03123 PF01883 Iron-sulfur cluster assembly protein SYN_03123 PF10609 NUBPL iron-transfer P-loop NTPase SYN_03124 PF01883 Iron-sulfur cluster assembly protein SYN_03124 PF10609 NUBPL iron-transfer P-loop NTPase SYN_03127 PF02491 SHS2 domain inserted in FTSA SYN_03128 PF00501 AMP-binding enzyme SYN_03128 PF13193 AMP-binding enzyme C-terminal domain SYN_03131 PF01161 Phosphatidylethanolamine-binding protein SYN_03141 PF09312 SurA N-terminal domain SYN_03141 PF00639 PPIC-type PPIASE domain SYN_03142 PF00675 Insulinase (Peptidase family M16) SYN_03142 PF05193 Peptidase M16 inactive domain SYN_03145 PF00889 Elongation factor TS SYN_03148 PF01321 Creatinase/Prolidase N-terminal domain SYN_03148 PF00557 Metallopeptidase family M24 SYN_03150 PF00293 NUDIX domain SYN_03153 PF01078 Magnesium chelatase, subunit ChlI SYN_03153 PF13335 Magnesium chelatase, subunit ChlI C-terminal SYN_03154 PF01063 Amino-transferase class IV SYN_03155 PF01063 Amino-transferase class IV SYN_03162 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SYN_03162 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SYN_03162 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SYN_03163 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SYN_03174 PF00872 Transposase, Mutator family SYN_03192 PF14579 Helix-hairpin-helix motif SYN_03192 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SYN_03192 PF07733 Bacterial DNA polymerase III alpha NTPase domain SYN_03192 PF02811 PHP domain SYN_03195 PF13181 Tetratricopeptide repeat SYN_03195 PF01435 Peptidase family M48 SYN_03196 PF02224 Cytidylate kinase SYN_03197 PF00575 S1 RNA binding domain SYN_03198 PF01343 Peptidase family S49 SYN_03199 PF04545 Sigma-70, region 4 SYN_03199 PF04539 Sigma-70 region 3 SYN_03199 PF04542 Sigma-70 region 2 SYN_03199 PF00140 Sigma-70 factor, region 1.2 SYN_03199 PF03979 Sigma-70 factor, region 1.1 SYN_03200 PF00216 Bacterial DNA-binding protein SYN_03201 PF04002 RadC-like JAB domain SYN_03202 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SYN_03202 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SYN_03204 PF01026 TatD related DNase SYN_03206 PF12857 TOBE-like domain SYN_03206 PF17850 CysA C-terminal regulatory domain SYN_03206 PF00005 ABC transporter SYN_03213 PF13183 4Fe-4S dicluster domain SYN_03213 PF02754 Cysteine-rich domain SYN_03218 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_03218 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_03218 PF01610 Transposase SYN_03220 PF00923 Transaldolase/Fructose-6-phosphate aldolase SYN_03223 PF00118 TCP-1/cpn60 chaperonin family SYN_03227 PF00549 CoA-ligase SYN_03227 PF08442 ATP-grasp domain SYN_03230 PF01435 Peptidase family M48 SYN_03230 PF16491 CAAX prenyl protease N-terminal, five membrane helices SYN_03234 PF01184 GPR1/FUN34/yaaH family SYN_03249 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SYN_03249 PF13542 Helix-turn-helix domain of transposase family ISL3 SYN_03249 PF01610 Transposase SYN_03250 PF01256 Carbohydrate kinase SYN_03250 PF03853 YjeF-related protein N-terminus SYN_03252 PF00348 Polyprenyl synthetase SYN_03254 PF00164 Ribosomal protein S12/S23 SYN_03255 PF00177 Ribosomal protein S7p/S5e SYN_03256 PF00366 Ribosomal protein S17 SYN_03257 PF00238 Ribosomal protein L14p/L23e SYN_03272 PF13662 Toprim domain SYN_03272 PF02132 RecR protein SYN_03279 PF00528 Binding-protein-dependent transport system inner membrane component SYN_03311 PF00164 Ribosomal protein S12/S23 SYN_03313 PF00467 KOW motif SYN_03313 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SYN_03314 PF00281 Ribosomal protein L5 SYN_03314 PF00673 ribosomal L5P family C-terminus SYN_03315 PF00253 Ribosomal protein S14p/S29e SYN_03316 PF00410 Ribosomal protein S8 SYN_03353 PF00156 Phosphoribosyl transferase domain SYN_03385 PF01578 Cytochrome C assembly protein SYN_03523 PF04055 Radical SAM superfamily SYN_03543 PF01230 HIT domain SYN_03595 PF01695 IstB-like ATP binding protein SYN_03606 PF02223 Thymidylate kinase SYN_03628 PF01435 Peptidase family M48 SYN_03643 PF06480 FtsH Extracellular SYN_03643 PF01434 Peptidase family M41 SYN_03643 PF00004 ATPase family associated with various cellular activities (AAA) SYN_03643 PF17862 AAA+ lid domain SYN_03680 PF00578 AhpC/TSA family SYN_03698 PF08029 HisG, C-terminal domain SYN_03698 PF01634 ATP phosphoribosyltransferase SYN_03702 PF00156 Phosphoribosyl transferase domain SYN_03707 PF02501 Type II secretion system (T2SS), protein I SYN_03707 PF07963 Prokaryotic N-terminal methylation motif SYN_03714 PF07963 Prokaryotic N-terminal methylation motif SYN_03714 PF00114 Pilin (bacterial filament) SYN_03718 PF04723 Glycine reductase complex selenoprotein A SYN_03766 PF13807 G-rich domain on putative tyrosine kinase SYN_03766 PF02706 Chain length determinant protein SYN_03766 PF13614 AAA domain SYN_03778 PF04977 Septum formation initiator SYN_03784 PF04015 Domain of unknown function (DUF362) SYN_03787 PF08534 Redoxin SYN_03790 PF00121 Triosephosphate isomerase SYN_03791 PF03840 Preprotein translocase SecG subunit SYN_03861 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SYN_03861 PF01266 FAD dependent oxidoreductase SYN_03862 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SYN_03862 PF01266 FAD dependent oxidoreductase