locus-tag class description J5A52_00010 PF00005 ABC transporter J5A52_00010 PF02687 FtsX-like permease family J5A52_00010 PF12704 MacB-like periplasmic core domain J5A52_00015 PF00005 ABC transporter J5A52_00015 PF02687 FtsX-like permease family J5A52_00015 PF12704 MacB-like periplasmic core domain J5A52_00020 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain J5A52_00020 PF01380 SIS domain J5A52_00050 PF02875 Mur ligase family, glutamate ligase domain J5A52_00050 PF08245 Mur ligase middle domain J5A52_00050 PF01225 Mur ligase family, catalytic domain J5A52_00055 PF00814 Glycoprotease family J5A52_00070 PF08264 Anticodon-binding domain of tRNA J5A52_00070 PF00133 tRNA synthetases class I (I, L, M and V) J5A52_00070 PF10458 Valyl tRNA synthetase tRNA binding arm J5A52_00080 PF02016 LD-carboxypeptidase N-terminal domain J5A52_00080 PF17676 LD-carboxypeptidase C-terminal domain J5A52_00085 PF02590 Predicted SPOUT methyltransferase J5A52_00090 PF01230 HIT domain J5A52_00105 PF13732 Domain of unknown function (DUF4162) J5A52_00105 PF00005 ABC transporter J5A52_00115 PF00317 Ribonucleotide reductase, all-alpha domain J5A52_00115 PF03477 ATP cone domain J5A52_00115 PF02867 Ribonucleotide reductase, barrel domain J5A52_00120 PF00268 Ribonucleotide reductase, small chain J5A52_00135 PF06418 CTP synthase N-terminus J5A52_00135 PF00117 Glutamine amidotransferase class-I J5A52_00145 PF03485 Arginyl tRNA synthetase N terminal domain J5A52_00145 PF05746 DALR anticodon binding domain J5A52_00145 PF00750 tRNA synthetases class I (R) J5A52_00165 PF00312 Ribosomal protein S15 J5A52_00290 PF02463 RecF/RecN/SMC N terminal domain J5A52_00295 PF02767 DNA polymerase III beta subunit, central domain J5A52_00295 PF02768 DNA polymerase III beta subunit, C-terminal domain J5A52_00295 PF00712 DNA polymerase III beta subunit, N-terminal domain J5A52_00300 PF00308 Bacterial dnaA protein J5A52_00300 PF08299 Bacterial dnaA protein helix-turn-helix J5A52_00300 PF11638 DnaA N-terminal domain J5A52_00305 PF00468 Ribosomal protein L34 J5A52_00310 PF00825 Ribonuclease P J5A52_00315 PF02096 60Kd inner membrane protein J5A52_00315 PF14849 YidC periplasmic domain J5A52_00325 PF04011 LemA family J5A52_00335 PF00534 Glycosyl transferases group 1 J5A52_00335 PF13439 Glycosyltransferase Family 4 J5A52_00345 PF00535 Glycosyl transferase family 2 J5A52_00350 PF02629 CoA binding domain J5A52_00350 PF00549 CoA-ligase J5A52_00355 PF08442 ATP-grasp domain J5A52_00355 PF00549 CoA-ligase J5A52_00365 PF01040 UbiA prenyltransferase family J5A52_00375 PF00535 Glycosyl transferase family 2 J5A52_00385 PF00005 ABC transporter J5A52_00385 PF14524 Wzt C-terminal domain J5A52_00415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J5A52_00420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J5A52_00420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J5A52_00445 PF00535 Glycosyl transferase family 2 J5A52_00445 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 J5A52_00500 PF00483 Nucleotidyl transferase J5A52_00505 PF13173 AAA domain J5A52_00505 PF13635 Domain of unknown function (DUF4143) J5A52_00515 PF16363 GDP-mannose 4,6 dehydratase J5A52_00520 PF16363 GDP-mannose 4,6 dehydratase J5A52_00525 PF01467 Cytidylyltransferase-like J5A52_00525 PF00294 pfkB family carbohydrate kinase J5A52_00530 PF13439 Glycosyltransferase Family 4 J5A52_00540 PF02397 Bacterial sugar transferase J5A52_00550 PF01726 LexA DNA binding domain J5A52_00550 PF00717 Peptidase S24-like J5A52_00565 PF00293 NUDIX domain J5A52_00580 PF01725 Ham1 family J5A52_00595 PF03773 Predicted permease J5A52_00610 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain J5A52_00610 PF01522 Polysaccharide deacetylase J5A52_00625 PF02661 Fic/DOC family J5A52_00625 PF13784 Fic/DOC family N-terminal J5A52_00630 PF18273 Type III R-M EcoP15I C-terminal domain J5A52_00630 PF01555 DNA methylase J5A52_00650 PF04851 Type III restriction enzyme, res subunit J5A52_00650 PF08774 VRR-NUC domain J5A52_00660 PF02773 S-adenosylmethionine synthetase, C-terminal domain J5A52_00660 PF02772 S-adenosylmethionine synthetase, central domain J5A52_00660 PF00438 S-adenosylmethionine synthetase, N-terminal domain J5A52_00670 PF04237 YjbR J5A52_00675 PF01842 ACT domain J5A52_00675 PF01817 Chorismate mutase type II J5A52_00675 PF00800 Prephenate dehydratase J5A52_00680 PF00293 NUDIX domain J5A52_00690 PF01725 Ham1 family J5A52_00695 PF00293 NUDIX domain J5A52_00705 PF00881 Nitroreductase family J5A52_00715 PF02594 Uncharacterised ACR, YggU family COG1872 J5A52_00760 PF00664 ABC transporter transmembrane region J5A52_00760 PF00005 ABC transporter J5A52_00765 PF00664 ABC transporter transmembrane region J5A52_00765 PF00005 ABC transporter J5A52_00775 PF01161 Phosphatidylethanolamine-binding protein J5A52_00785 PF02661 Fic/DOC family J5A52_00790 PF00005 ABC transporter J5A52_00810 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J5A52_00810 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J5A52_00815 PF03606 C4-dicarboxylate anaerobic carrier J5A52_00820 PF00696 Amino acid kinase family J5A52_00825 PF00166 Chaperonin 10 Kd subunit J5A52_00830 PF00118 TCP-1/cpn60 chaperonin family J5A52_00835 PF02082 Transcriptional regulator J5A52_00845 PF02687 FtsX-like permease family J5A52_00845 PF12704 MacB-like periplasmic core domain J5A52_00850 PF00005 ABC transporter J5A52_00855 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase J5A52_00865 PF00072 Response regulator receiver domain J5A52_00865 PF00486 Transcriptional regulatory protein, C terminal J5A52_00870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_00870 PF00512 His Kinase A (phospho-acceptor) domain J5A52_00885 PF06965 Na+/H+ antiporter 1 J5A52_00885 PF13462 Thioredoxin J5A52_00890 PF00571 CBS domain J5A52_00890 PF03471 Transporter associated domain J5A52_00895 PF00571 CBS domain J5A52_00895 PF01595 Cyclin M transmembrane N-terminal domain J5A52_00900 PF00684 DnaJ central domain J5A52_00900 PF00226 DnaJ domain J5A52_00900 PF01556 DnaJ C terminal domain J5A52_00915 PF08443 RimK-like ATP-grasp domain J5A52_00915 PF18030 RimK PreATP-grasp domain J5A52_00940 PF01709 Transcriptional regulator J5A52_00950 PF02075 Crossover junction endodeoxyribonuclease RuvC J5A52_00955 PF00912 Transglycosylase J5A52_00955 PF00905 Penicillin binding protein transpeptidase domain J5A52_00960 PF01330 RuvA N terminal domain J5A52_00960 PF07499 RuvA, C-terminal domain J5A52_00975 PF05496 Holliday junction DNA helicase RuvB P-loop domain J5A52_00975 PF17864 RuvB AAA lid domain J5A52_00975 PF05491 RuvB C-terminal winged helix domain J5A52_00985 PF07963 Prokaryotic N-terminal methylation motif J5A52_00985 PF14245 Type IV pilin PilA J5A52_00990 PF00154 recA bacterial DNA recombination protein J5A52_01025 PF02631 RecX family J5A52_01060 PF00482 Type II secretion system (T2SS), protein F J5A52_01065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J5A52_01065 PF00437 Type II/IV secretion system protein J5A52_01070 PF01336 OB-fold nucleic acid binding domain J5A52_01070 PF02938 GAD domain J5A52_01070 PF00152 tRNA synthetases class II (D, K and N) J5A52_01090 PF02390 Putative methyltransferase J5A52_01105 PF01225 Mur ligase family, catalytic domain J5A52_01105 PF08245 Mur ligase middle domain J5A52_01105 PF02875 Mur ligase family, glutamate ligase domain J5A52_01140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J5A52_01140 PF07992 Pyridine nucleotide-disulphide oxidoreductase J5A52_01140 PF00403 Heavy-metal-associated domain J5A52_01160 PF01725 Ham1 family J5A52_01195 PF01171 PP-loop family J5A52_01195 PF14437 MafB19-like deaminase J5A52_01200 PF00004 ATPase family associated with various cellular activities (AAA) J5A52_01200 PF17862 AAA+ lid domain J5A52_01200 PF01434 Peptidase family M41 J5A52_01210 PF00009 Elongation factor Tu GTP binding domain J5A52_01210 PF00679 Elongation factor G C-terminus J5A52_01210 PF06421 GTP-binding protein LepA C-terminus J5A52_01225 PF00679 Elongation factor G C-terminus J5A52_01225 PF00009 Elongation factor Tu GTP binding domain J5A52_01225 PF03144 Elongation factor Tu domain 2 J5A52_01225 PF06421 GTP-binding protein LepA C-terminus J5A52_01245 PF00625 Guanylate kinase J5A52_01260 PF00625 Guanylate kinase J5A52_01265 PF01628 HrcA protein C terminal domain J5A52_01270 PF01025 GrpE J5A52_01275 PF00012 Hsp70 protein J5A52_01280 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J5A52_01295 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J5A52_01300 PF00814 Glycoprotease family J5A52_01305 PF12072 Domain of unknown function (DUF3552) J5A52_01305 PF00013 KH domain J5A52_01305 PF01966 HD domain J5A52_01315 PF03952 Enolase, N-terminal domain J5A52_01315 PF00113 Enolase, C-terminal TIM barrel domain J5A52_01320 PF00300 Histidine phosphatase superfamily (branch 1) J5A52_01335 PF00293 NUDIX domain J5A52_01350 PF07685 CobB/CobQ-like glutamine amidotransferase domain J5A52_01355 PF08353 Domain of unknown function (DUF1727) J5A52_01355 PF08245 Mur ligase middle domain J5A52_01365 PF17871 AAA lid domain J5A52_01365 PF10431 C-terminal, D2-small domain, of ClpB protein J5A52_01365 PF00004 ATPase family associated with various cellular activities (AAA) J5A52_01365 PF07724 AAA domain (Cdc48 subfamily) J5A52_01365 PF02861 Clp amino terminal domain, pathogenicity island component J5A52_01385 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J5A52_01385 PF01565 FAD binding domain J5A52_01415 PF00464 Serine hydroxymethyltransferase J5A52_01420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J5A52_01480 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J5A52_01480 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J5A52_01485 PF00072 Response regulator receiver domain J5A52_01485 PF00486 Transcriptional regulatory protein, C terminal J5A52_01495 PF00989 PAS fold J5A52_01495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_01495 PF16736 Single Cache-like J5A52_01495 PF00512 His Kinase A (phospho-acceptor) domain J5A52_01555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J5A52_01555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J5A52_01560 PF00596 Class II Aldolase and Adducin N-terminal domain J5A52_01560 PF00464 Serine hydroxymethyltransferase J5A52_01565 PF00293 NUDIX domain J5A52_01570 PF00535 Glycosyl transferase family 2 J5A52_01575 PF01638 HxlR-like helix-turn-helix J5A52_01610 PF05257 CHAP domain J5A52_01650 PF02887 Pyruvate kinase, alpha/beta domain J5A52_01650 PF00224 Pyruvate kinase, barrel domain J5A52_01650 PF00391 PEP-utilising enzyme, mobile domain J5A52_01655 PF00121 Triosephosphate isomerase J5A52_01665 PF13361 UvrD-like helicase C-terminal domain J5A52_01665 PF00580 UvrD/REP helicase N-terminal domain J5A52_01675 PF00398 Ribosomal RNA adenine dimethylase J5A52_01690 PF08264 Anticodon-binding domain of tRNA J5A52_01690 PF09334 tRNA synthetases class I (M) J5A52_01695 PF01026 TatD related DNase J5A52_01710 PF00266 Aminotransferase class-V J5A52_01715 PF02698 DUF218 domain J5A52_01725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J5A52_01725 PF01411 tRNA synthetases class II (A) J5A52_01730 PF02491 SHS2 domain inserted in FTSA J5A52_01740 PF03652 Holliday junction resolvase J5A52_01750 PF05257 CHAP domain J5A52_01750 PF01476 LysM domain J5A52_01755 PF09269 Domain of unknown function (DUF1967) J5A52_01755 PF01018 GTP1/OBG J5A52_01755 PF01926 50S ribosome-binding GTPase J5A52_01775 PF08411 Exonuclease C-terminal J5A52_01775 PF00929 Exonuclease J5A52_01790 PF00005 ABC transporter J5A52_01790 PF17755 UvrA DNA-binding domain J5A52_01790 PF17760 UvrA interaction domain J5A52_01795 PF09335 SNARE associated Golgi protein J5A52_01800 PF01386 Ribosomal L25p family J5A52_01800 PF14693 Ribosomal protein TL5, C-terminal domain J5A52_01805 PF00664 ABC transporter transmembrane region J5A52_01805 PF00005 ABC transporter J5A52_01820 PF00085 Thioredoxin J5A52_01825 PF03167 Uracil DNA glycosylase superfamily J5A52_01830 PF04343 Protein of unknown function, DUF488 J5A52_01835 PF12826 Helix-hairpin-helix motif J5A52_01835 PF01541 GIY-YIG catalytic domain J5A52_01835 PF08459 UvrC Helix-hairpin-helix N-terminal J5A52_01835 PF02151 UvrB/uvrC motif J5A52_01840 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV J5A52_01875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J5A52_01875 PF03120 NAD-dependent DNA ligase OB-fold domain J5A52_01875 PF12826 Helix-hairpin-helix motif J5A52_01875 PF01653 NAD-dependent DNA ligase adenylation domain J5A52_01875 PF00533 BRCA1 C Terminus (BRCT) domain J5A52_01885 PF00005 ABC transporter J5A52_01910 PF13737 Transposase DDE domain J5A52_01930 PF00679 Elongation factor G C-terminus J5A52_01930 PF03144 Elongation factor Tu domain 2 J5A52_01930 PF00009 Elongation factor Tu GTP binding domain J5A52_01935 PF00128 Alpha amylase, catalytic domain J5A52_01935 PF16657 Maltogenic Amylase, C-terminal domain J5A52_01940 PF00004 ATPase family associated with various cellular activities (AAA) J5A52_01940 PF12002 MgsA AAA+ ATPase C terminal J5A52_01940 PF16193 AAA C-terminal domain J5A52_01945 PF16200 C-terminal region of band_7 J5A52_01945 PF01145 SPFH domain / Band 7 family J5A52_01955 PF17863 AAA lid domain J5A52_01955 PF07726 ATPase family associated with various cellular activities (AAA) J5A52_02000 PF00005 ABC transporter J5A52_02015 PF08245 Mur ligase middle domain J5A52_02015 PF02875 Mur ligase family, glutamate ligase domain J5A52_02015 PF01225 Mur ligase family, catalytic domain J5A52_02025 PF13603 Leucyl-tRNA synthetase, Domain 2 J5A52_02025 PF00133 tRNA synthetases class I (I, L, M and V) J5A52_02025 PF08264 Anticodon-binding domain of tRNA J5A52_02025 PF08264 Anticodon-binding domain of tRNA J5A52_02025 PF00133 tRNA synthetases class I (I, L, M and V) J5A52_02025 PF13603 Leucyl-tRNA synthetase, Domain 2 J5A52_02025 PF09334 tRNA synthetases class I (M) J5A52_02025 PF09334 tRNA synthetases class I (M) J5A52_02040 PF01029 NusB family J5A52_02045 PF00293 NUDIX domain J5A52_02050 PF00035 Double-stranded RNA binding motif J5A52_02050 PF14622 Ribonuclease-III-like J5A52_02055 PF00886 Ribosomal protein S16 J5A52_02065 PF01746 tRNA (Guanine-1)-methyltransferase J5A52_02080 PF03129 Anticodon binding domain J5A52_02080 PF13393 Histidyl-tRNA synthetase J5A52_02095 PF06463 Molybdenum Cofactor Synthesis C J5A52_02095 PF04055 Radical SAM superfamily J5A52_02125 PF00230 Major intrinsic protein J5A52_02135 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J5A52_02135 PF01409 tRNA synthetases class II core domain (F) J5A52_02150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J5A52_02150 PF01588 Putative tRNA binding domain J5A52_02150 PF03147 Ferredoxin-fold anticodon binding domain J5A52_02150 PF03484 tRNA synthetase B5 domain J5A52_02150 PF03483 B3/4 domain J5A52_02160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J5A52_02165 PF07992 Pyridine nucleotide-disulphide oxidoreductase J5A52_02170 PF03009 Glycerophosphoryl diester phosphodiesterase family J5A52_02180 PF00719 Inorganic pyrophosphatase J5A52_02190 PF04607 Region found in RelA / SpoT proteins J5A52_02190 PF02824 TGS domain J5A52_02190 PF13291 ACT domain J5A52_02195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J5A52_02195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J5A52_02200 PF02502 Ribose/Galactose Isomerase J5A52_02210 PF00456 Transketolase, thiamine diphosphate binding domain J5A52_02215 PF02780 Transketolase, C-terminal domain J5A52_02215 PF02779 Transketolase, pyrimidine binding domain J5A52_02220 PF01116 Fructose-bisphosphate aldolase class-II J5A52_02225 PF00294 pfkB family carbohydrate kinase J5A52_02245 PF17757 UvrB interaction domain J5A52_02245 PF02151 UvrB/uvrC motif J5A52_02245 PF04851 Type III restriction enzyme, res subunit J5A52_02245 PF00271 Helicase conserved C-terminal domain J5A52_02245 PF12344 Ultra-violet resistance protein B J5A52_02255 PF00128 Alpha amylase, catalytic domain J5A52_02255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J5A52_02255 PF02806 Alpha amylase, C-terminal all-beta domain J5A52_02260 PF02686 Glu-tRNAGln amidotransferase C subunit J5A52_02265 PF01425 Amidase J5A52_02275 PF02637 GatB domain J5A52_02275 PF02934 GatB/GatE catalytic domain J5A52_02280 PF00483 Nucleotidyl transferase J5A52_02300 PF02811 PHP domain J5A52_02300 PF14579 Helix-hairpin-helix motif J5A52_02300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J5A52_02300 PF07733 Bacterial DNA polymerase III alpha NTPase domain J5A52_02305 PF08032 RNA 2'-O ribose methyltransferase substrate binding J5A52_02305 PF00588 SpoU rRNA Methylase family J5A52_02310 PF00437 Type II/IV secretion system protein J5A52_02310 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J5A52_02315 PF01245 Ribosomal protein L19 J5A52_02320 PF01351 Ribonuclease HII J5A52_02330 PF11838 ERAP1-like C-terminal domain J5A52_02330 PF01433 Peptidase family M1 domain J5A52_02340 PF00293 NUDIX domain J5A52_02350 PF01702 Queuine tRNA-ribosyltransferase J5A52_02365 PF00347 Ribosomal protein L6 J5A52_02370 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J5A52_02375 PF03719 Ribosomal protein S5, C-terminal domain J5A52_02375 PF00333 Ribosomal protein S5, N-terminal domain J5A52_02380 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J5A52_02385 PF04229 GrpB protein J5A52_02385 PF13673 Acetyltransferase (GNAT) domain J5A52_02390 PF00344 SecY translocase J5A52_02395 PF01176 Translation initiation factor 1A / IF-1 J5A52_02400 PF00444 Ribosomal protein L36 J5A52_02405 PF00416 Ribosomal protein S13/S18 J5A52_02410 PF00411 Ribosomal protein S11 J5A52_02415 PF00163 Ribosomal protein S4/S9 N-terminal domain J5A52_02415 PF01479 S4 domain J5A52_02420 PF01000 RNA polymerase Rpb3/RpoA insert domain J5A52_02420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J5A52_02420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J5A52_02425 PF01196 Ribosomal protein L17 J5A52_02430 PF00572 Ribosomal protein L13 J5A52_02435 PF00380 Ribosomal protein S9/S16 J5A52_02440 PF00579 tRNA synthetases class I (W and Y) J5A52_02445 PF00849 RNA pseudouridylate synthase J5A52_02445 PF01479 S4 domain J5A52_02495 PF00471 Ribosomal protein L33 J5A52_02515 PF00534 Glycosyl transferases group 1 J5A52_02515 PF13439 Glycosyltransferase Family 4 J5A52_02525 PF13737 Transposase DDE domain J5A52_02560 PF16736 Single Cache-like J5A52_02560 PF00989 PAS fold J5A52_02560 PF00512 His Kinase A (phospho-acceptor) domain J5A52_02560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_02570 PF02357 Transcription termination factor nusG J5A52_02570 PF00467 KOW motif J5A52_02575 PF03946 Ribosomal protein L11, N-terminal domain J5A52_02575 PF00298 Ribosomal protein L11, RNA binding domain J5A52_02595 PF05257 CHAP domain J5A52_02600 PF00687 Ribosomal protein L1p/L10e family J5A52_02615 PF01406 tRNA synthetases class I (C) catalytic domain J5A52_02620 PF13936 Helix-turn-helix domain J5A52_02625 PF00303 Thymidylate synthase J5A52_02630 PF00186 Dihydrofolate reductase J5A52_02640 PF02223 Thymidylate kinase J5A52_02645 PF00466 Ribosomal protein L10 J5A52_02650 PF16320 Ribosomal protein L7/L12 dimerisation domain J5A52_02650 PF00542 Ribosomal protein L7/L12 C-terminal domain J5A52_02685 PF02547 Queuosine biosynthesis protein J5A52_02695 PF08529 NusA N-terminal domain J5A52_02695 PF13184 NusA-like KH domain J5A52_02695 PF00575 S1 RNA binding domain J5A52_02700 PF00004 ATPase family associated with various cellular activities (AAA) J5A52_02700 PF17871 AAA lid domain J5A52_02700 PF10431 C-terminal, D2-small domain, of ClpB protein J5A52_02700 PF07724 AAA domain (Cdc48 subfamily) J5A52_02700 PF02861 Clp amino terminal domain, pathogenicity island component J5A52_02710 PF18073 Rubredoxin metal binding domain J5A52_02720 PF00912 Transglycosylase J5A52_02720 PF00905 Penicillin binding protein transpeptidase domain J5A52_02725 PF00579 tRNA synthetases class I (W and Y) J5A52_02730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J5A52_02735 PF17191 RecG wedge domain J5A52_02735 PF00271 Helicase conserved C-terminal domain J5A52_02735 PF00270 DEAD/DEAH box helicase J5A52_02780 PF01565 FAD binding domain J5A52_02780 PF02913 FAD linked oxidases, C-terminal domain J5A52_02800 PF02224 Cytidylate kinase J5A52_02800 PF02569 Pantoate-beta-alanine ligase J5A52_02815 PF08032 RNA 2'-O ribose methyltransferase substrate binding J5A52_02815 PF00588 SpoU rRNA Methylase family J5A52_02830 PF13393 Histidyl-tRNA synthetase J5A52_02830 PF03129 Anticodon binding domain J5A52_02835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J5A52_02835 PF05697 Bacterial trigger factor protein (TF) J5A52_02835 PF05698 Bacterial trigger factor protein (TF) C-terminus J5A52_02845 PF00574 Clp protease J5A52_02855 PF04560 RNA polymerase Rpb2, domain 7 J5A52_02855 PF00562 RNA polymerase Rpb2, domain 6 J5A52_02855 PF10385 RNA polymerase beta subunit external 1 domain J5A52_02855 PF04565 RNA polymerase Rpb2, domain 3 J5A52_02855 PF04561 RNA polymerase Rpb2, domain 2 J5A52_02855 PF04563 RNA polymerase beta subunit J5A52_02860 PF00623 RNA polymerase Rpb1, domain 2 J5A52_02860 PF04983 RNA polymerase Rpb1, domain 3 J5A52_02860 PF05000 RNA polymerase Rpb1, domain 4 J5A52_02860 PF04998 RNA polymerase Rpb1, domain 5 J5A52_02860 PF04997 RNA polymerase Rpb1, domain 1 J5A52_02885 PF00164 Ribosomal protein S12/S23 J5A52_02890 PF00177 Ribosomal protein S7p/S5e J5A52_02900 PF00009 Elongation factor Tu GTP binding domain J5A52_02900 PF03764 Elongation factor G, domain IV J5A52_02900 PF14492 Elongation Factor G, domain II J5A52_02900 PF00679 Elongation factor G C-terminus J5A52_02900 PF03144 Elongation factor Tu domain 2 J5A52_02905 PF00497 Bacterial extracellular solute-binding proteins, family 3 J5A52_02910 PF00528 Binding-protein-dependent transport system inner membrane component J5A52_02915 PF00005 ABC transporter J5A52_02935 PF01501 Glycosyl transferase family 8 J5A52_02935 PF00535 Glycosyl transferase family 2 J5A52_02940 PF03275 UDP-galactopyranose mutase J5A52_02985 PF00625 Guanylate kinase J5A52_02990 PF01725 Ham1 family J5A52_02995 PF03143 Elongation factor Tu C-terminal domain J5A52_02995 PF03144 Elongation factor Tu domain 2 J5A52_02995 PF00009 Elongation factor Tu GTP binding domain J5A52_03005 PF00338 Ribosomal protein S10p/S20e J5A52_03015 PF00297 Ribosomal protein L3 J5A52_03020 PF00573 Ribosomal protein L4/L1 family J5A52_03025 PF00276 Ribosomal protein L23 J5A52_03030 PF00181 Ribosomal Proteins L2, RNA binding domain J5A52_03030 PF03947 Ribosomal Proteins L2, C-terminal domain J5A52_03035 PF00203 Ribosomal protein S19 J5A52_03040 PF00237 Ribosomal protein L22p/L17e J5A52_03045 PF00189 Ribosomal protein S3, C-terminal domain J5A52_03045 PF07650 KH domain J5A52_03050 PF00252 Ribosomal protein L16p/L10e J5A52_03060 PF00366 Ribosomal protein S17 J5A52_03065 PF00238 Ribosomal protein L14p/L23e J5A52_03070 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J5A52_03070 PF00467 KOW motif J5A52_03075 PF00673 ribosomal L5P family C-terminus J5A52_03075 PF00281 Ribosomal protein L5 J5A52_03080 PF00253 Ribosomal protein S14p/S29e J5A52_03085 PF00410 Ribosomal protein S8 J5A52_03090 PF09297 NADH pyrophosphatase zinc ribbon domain J5A52_03090 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J5A52_03090 PF00293 NUDIX domain J5A52_03105 PF12169 DNA polymerase III subunits gamma and tau domain III J5A52_03110 PF03796 DnaB-like helicase C terminal domain J5A52_03110 PF00772 DnaB-like helicase N terminal domain J5A52_03120 PF02575 YbaB/EbfC DNA-binding family J5A52_03125 PF13662 Toprim domain J5A52_03125 PF02132 RecR protein J5A52_03145 PF00005 ABC transporter J5A52_03145 PF12848 ABC transporter J5A52_03145 PF16326 ABC transporter C-terminal domain J5A52_03150 PF00005 ABC transporter J5A52_03185 PF08245 Mur ligase middle domain J5A52_03185 PF02875 Mur ligase family, glutamate ligase domain J5A52_03190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J5A52_03190 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J5A52_03195 PF02874 ATP synthase alpha/beta family, beta-barrel domain J5A52_03195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J5A52_03205 PF00231 ATP synthase J5A52_03210 PF02874 ATP synthase alpha/beta family, beta-barrel domain J5A52_03210 PF00306 ATP synthase alpha/beta chain, C terminal domain J5A52_03210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J5A52_03215 PF00430 ATP synthase B/B' CF(0) J5A52_03215 PF00213 ATP synthase delta (OSCP) subunit J5A52_03220 PF00430 ATP synthase B/B' CF(0) J5A52_03230 PF00119 ATP synthase A chain J5A52_03245 PF00462 Glutaredoxin J5A52_03255 PF00005 ABC transporter J5A52_03255 PF16326 ABC transporter C-terminal domain J5A52_03255 PF12848 ABC transporter J5A52_03265 PF01668 SmpB protein J5A52_03270 PF13439 Glycosyltransferase Family 4 J5A52_03270 PF00534 Glycosyl transferases group 1 J5A52_03290 PF02569 Pantoate-beta-alanine ligase J5A52_03290 PF02224 Cytidylate kinase J5A52_03300 PF03372 Endonuclease/Exonuclease/phosphatase family J5A52_03315 PF00293 NUDIX domain J5A52_03335 PF13361 UvrD-like helicase C-terminal domain J5A52_03335 PF00580 UvrD/REP helicase N-terminal domain J5A52_03340 PF01207 Dihydrouridine synthase (Dus) J5A52_03345 PF01406 tRNA synthetases class I (C) catalytic domain J5A52_03355 PF00689 Cation transporting ATPase, C-terminus J5A52_03355 PF00690 Cation transporter/ATPase, N-terminus J5A52_03360 PF00152 tRNA synthetases class II (D, K and N) J5A52_03360 PF01336 OB-fold nucleic acid binding domain J5A52_03365 PF00152 tRNA synthetases class II (D, K and N) J5A52_03365 PF01336 OB-fold nucleic acid binding domain J5A52_03370 PF00916 Sulfate permease family J5A52_03370 PF01740 STAS domain J5A52_03375 PF00486 Transcriptional regulatory protein, C terminal J5A52_03375 PF00072 Response regulator receiver domain J5A52_03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_03380 PF00672 HAMP domain J5A52_03380 PF00512 His Kinase A (phospho-acceptor) domain J5A52_03395 PF00005 ABC transporter J5A52_03455 PF00398 Ribosomal RNA adenine dimethylase J5A52_03460 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase J5A52_03460 PF09363 XFP C-terminal domain J5A52_03460 PF09364 XFP N-terminal domain J5A52_03475 PF05958 tRNA (Uracil-5-)-methyltransferase J5A52_03475 PF01938 TRAM domain J5A52_03535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J5A52_03540 PF08029 HisG, C-terminal domain J5A52_03540 PF01634 ATP phosphoribosyltransferase J5A52_03550 PF13936 Helix-turn-helix domain J5A52_03560 PF00486 Transcriptional regulatory protein, C terminal J5A52_03560 PF00072 Response regulator receiver domain J5A52_03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_03565 PF00512 His Kinase A (phospho-acceptor) domain J5A52_03570 PF11258 Protein of unknown function (DUF3048) N-terminal domain J5A52_03570 PF17479 Protein of unknown function (DUF3048) C-terminal domain J5A52_03575 PF00749 tRNA synthetases class I (E and Q), catalytic domain J5A52_03595 PF01638 HxlR-like helix-turn-helix J5A52_03625 PF01476 LysM domain J5A52_03625 PF05257 CHAP domain J5A52_03650 PF03949 Malic enzyme, NAD binding domain J5A52_03650 PF00390 Malic enzyme, N-terminal domain J5A52_03675 PF01435 Peptidase family M48 J5A52_03695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_03695 PF00672 HAMP domain J5A52_03695 PF00989 PAS fold J5A52_03695 PF00512 His Kinase A (phospho-acceptor) domain J5A52_03700 PF00486 Transcriptional regulatory protein, C terminal J5A52_03700 PF00072 Response regulator receiver domain J5A52_03705 PF00849 RNA pseudouridylate synthase J5A52_03705 PF01479 S4 domain J5A52_03750 PF01867 CRISPR associated protein Cas1 J5A52_03800 PF01926 50S ribosome-binding GTPase J5A52_03800 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J5A52_03810 PF01555 DNA methylase J5A52_03810 PF18273 Type III R-M EcoP15I C-terminal domain J5A52_03825 PF01195 Peptidyl-tRNA hydrolase J5A52_03830 PF02492 CobW/HypB/UreG, nucleotide-binding domain J5A52_03830 PF07683 Cobalamin synthesis protein cobW C-terminal domain J5A52_03840 PF02492 CobW/HypB/UreG, nucleotide-binding domain J5A52_03840 PF07683 Cobalamin synthesis protein cobW C-terminal domain J5A52_03865 PF13368 Topoisomerase C-terminal repeat J5A52_03865 PF01751 Toprim domain J5A52_03865 PF01131 DNA topoisomerase J5A52_03870 PF07859 alpha/beta hydrolase fold J5A52_03875 PF04545 Sigma-70, region 4 J5A52_03875 PF04542 Sigma-70 region 2 J5A52_03875 PF00140 Sigma-70 factor, region 1.2 J5A52_03875 PF04539 Sigma-70 region 3 J5A52_03895 PF13395 HNH endonuclease J5A52_03895 PF18541 RuvC endonuclease subdomain 3 J5A52_03900 PF01867 CRISPR associated protein Cas1 J5A52_03905 PF09827 CRISPR associated protein Cas2 J5A52_03915 PF03033 Glycosyltransferase family 28 N-terminal domain J5A52_03915 PF04101 Glycosyltransferase family 28 C-terminal domain J5A52_03920 PF01098 Cell cycle protein J5A52_03925 PF00953 Glycosyl transferase family 4 J5A52_03930 PF03717 Penicillin-binding Protein dimerisation domain J5A52_03930 PF00905 Penicillin binding protein transpeptidase domain J5A52_03940 PF01795 MraW methylase family J5A52_03945 PF01933 Uncharacterised protein family UPF0052 J5A52_03950 PF00232 Glycosyl hydrolase family 1 J5A52_03970 PF05970 PIF1-like helicase J5A52_03970 PF14493 Helix-turn-helix domain J5A52_03980 PF00075 RNase H J5A52_04005 PF00011 Hsp20/alpha crystallin family J5A52_04010 PF00117 Glutamine amidotransferase class-I J5A52_04010 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J5A52_04055 PF02565 Recombination protein O C terminal J5A52_04055 PF11967 Recombination protein O N terminal J5A52_04060 PF00072 Response regulator receiver domain J5A52_04060 PF00486 Transcriptional regulatory protein, C terminal J5A52_04085 PF02601 Exonuclease VII, large subunit J5A52_04085 PF13742 OB-fold nucleic acid binding domain J5A52_04110 PF01016 Ribosomal L27 protein J5A52_04125 PF00072 Response regulator receiver domain J5A52_04125 PF00486 Transcriptional regulatory protein, C terminal J5A52_04135 PF17820 PDZ domain J5A52_04135 PF03572 Peptidase family S41 J5A52_04135 PF01471 Putative peptidoglycan binding domain J5A52_04140 PF05257 CHAP domain J5A52_04155 PF18075 FtsX extracellular domain J5A52_04155 PF02687 FtsX-like permease family J5A52_04160 PF00005 ABC transporter J5A52_04180 PF00472 RF-1 domain J5A52_04180 PF03462 PCRF domain J5A52_04190 PF08245 Mur ligase middle domain J5A52_04200 PF07516 SecA Wing and Scaffold domain J5A52_04200 PF01043 SecA preprotein cross-linking domain J5A52_04200 PF07517 SecA DEAD-like domain J5A52_04200 PF02810 SEC-C motif J5A52_04205 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus J5A52_04205 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J5A52_04210 PF01180 Dihydroorotate dehydrogenase J5A52_04215 PF02403 Seryl-tRNA synthetase N-terminal domain J5A52_04215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J5A52_04230 PF02673 Bacitracin resistance protein BacA J5A52_04235 PF04024 PspC domain J5A52_04240 PF03551 Transcriptional regulator PadR-like family J5A52_04250 PF08240 Alcohol dehydrogenase GroES-like domain J5A52_04250 PF13823 Alcohol dehydrogenase GroES-associated J5A52_04250 PF00107 Zinc-binding dehydrogenase J5A52_04270 PF13344 Haloacid dehalogenase-like hydrolase J5A52_04270 PF00293 NUDIX domain J5A52_04275 PF02545 Maf-like protein J5A52_04280 PF01336 OB-fold nucleic acid binding domain J5A52_04280 PF00152 tRNA synthetases class II (D, K and N) J5A52_04285 PF03449 Transcription elongation factor, N-terminal J5A52_04285 PF01272 Transcription elongation factor, GreA/GreB, C-term J5A52_04290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J5A52_04290 PF03129 Anticodon binding domain J5A52_04300 PF13180 PDZ domain J5A52_04300 PF02163 Peptidase family M50 J5A52_04305 PF01255 Putative undecaprenyl diphosphate synthase J5A52_04310 PF01765 Ribosome recycling factor J5A52_04330 PF00889 Elongation factor TS J5A52_04335 PF00318 Ribosomal protein S2 J5A52_04350 PF00293 NUDIX domain J5A52_04370 PF01197 Ribosomal protein L31 J5A52_04400 PF03167 Uracil DNA glycosylase superfamily J5A52_04410 PF00472 RF-1 domain J5A52_04410 PF03462 PCRF domain J5A52_04415 PF17827 PrmC N-terminal domain J5A52_04415 PF05175 Methyltransferase small domain J5A52_04420 PF13180 PDZ domain J5A52_04435 PF10502 Signal peptidase, peptidase S26 J5A52_04440 PF17762 HTH domain found in ParB protein J5A52_04440 PF02195 ParB-like nuclease domain J5A52_04445 PF13614 AAA domain J5A52_04450 PF00829 Ribosomal prokaryotic L21 protein J5A52_04470 PF00483 Nucleotidyl transferase J5A52_04480 PF08264 Anticodon-binding domain of tRNA J5A52_04480 PF00133 tRNA synthetases class I (I, L, M and V) J5A52_04500 PF03477 ATP cone domain J5A52_04505 PF00091 Tubulin/FtsZ family, GTPase domain J5A52_04505 PF12327 FtsZ family, C-terminal domain J5A52_04510 PF02491 SHS2 domain inserted in FTSA J5A52_04515 PF00557 Metallopeptidase family M24 J5A52_04525 PF09424 Yqey-like protein J5A52_04540 PF10141 Single-strand DNA-specific exonuclease, C terminal domain J5A52_04540 PF17768 RecJ OB domain J5A52_04540 PF02272 DHHA1 domain J5A52_04540 PF01368 DHH family J5A52_04555 PF00271 Helicase conserved C-terminal domain J5A52_04555 PF04851 Type III restriction enzyme, res subunit J5A52_04555 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J5A52_04555 PF17764 3′ DNA-binding domain (3′BD) J5A52_04555 PF18074 Primosomal protein N C-terminal domain J5A52_04560 PF01327 Polypeptide deformylase J5A52_04565 PF02911 Formyl transferase, C-terminal domain J5A52_04565 PF00551 Formyl transferase J5A52_04585 PF00009 Elongation factor Tu GTP binding domain J5A52_04585 PF11987 Translation-initiation factor 2 J5A52_04585 PF04760 Translation initiation factor IF-2, N-terminal region J5A52_04590 PF00575 S1 RNA binding domain J5A52_04610 PF00480 ROK family J5A52_04675 PF02681 Divergent PAP2 family J5A52_04680 PF03989 DNA gyrase C-terminal domain, beta-propeller J5A52_04680 PF00521 DNA gyrase/topoisomerase IV, subunit A J5A52_04685 PF01751 Toprim domain J5A52_04685 PF00204 DNA gyrase B J5A52_04685 PF00986 DNA gyrase B subunit, carboxyl terminus J5A52_04685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J5A52_04725 PF05198 Translation initiation factor IF-3, N-terminal domain J5A52_04725 PF00707 Translation initiation factor IF-3, C-terminal domain J5A52_04730 PF01632 Ribosomal protein L35 J5A52_04735 PF00453 Ribosomal protein L20 J5A52_04745 PF02163 Peptidase family M50 J5A52_04750 PF00830 Ribosomal L28 family J5A52_04770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J5A52_04775 PF03129 Anticodon binding domain J5A52_04775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J5A52_04775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J5A52_04820 PF00334 Nucleoside diphosphate kinase J5A52_04825 PF00589 Phage integrase family J5A52_04825 PF02899 Phage integrase, N-terminal SAM-like domain J5A52_04850 PF01478 Type IV leader peptidase family J5A52_04850 PF06750 Bacterial Peptidase A24 N-terminal domain J5A52_04860 PF00482 Type II secretion system (T2SS), protein F J5A52_04865 PF00437 Type II/IV secretion system protein J5A52_04870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J5A52_04870 PF00437 Type II/IV secretion system protein J5A52_04895 PF01926 50S ribosome-binding GTPase J5A52_04895 PF06071 Protein of unknown function (DUF933) J5A52_04905 PF01728 FtsJ-like methyltransferase J5A52_04905 PF01479 S4 domain J5A52_04915 PF01132 Elongation factor P (EF-P) OB domain J5A52_04915 PF08207 Elongation factor P (EF-P) KOW-like domain J5A52_04915 PF09285 Elongation factor P, C-terminal J5A52_04920 PF01084 Ribosomal protein S18 J5A52_04925 PF00436 Single-strand binding protein family J5A52_04930 PF01250 Ribosomal protein S6 J5A52_04935 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J5A52_04935 PF17854 FtsK alpha domain J5A52_04935 PF09397 Ftsk gamma domain J5A52_04935 PF01580 FtsK/SpoIIIE family J5A52_04945 PF00753 Metallo-beta-lactamase superfamily J5A52_04945 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J5A52_04945 PF17770 Ribonuclease J C-terminal domain J5A52_04970 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J5A52_04970 PF03725 3' exoribonuclease family, domain 2 J5A52_04970 PF01138 3' exoribonuclease family, domain 1 J5A52_04970 PF00013 KH domain J5A52_04970 PF00575 S1 RNA binding domain J5A52_04975 PF00293 NUDIX domain J5A52_05010 PF13737 Transposase DDE domain J5A52_05025 PF17841 BID domain of Bartonella effector protein (Bep) J5A52_05025 PF02661 Fic/DOC family J5A52_05055 PF04230 Polysaccharide pyruvyl transferase J5A52_05060 PF00535 Glycosyl transferase family 2 J5A52_05070 PF13439 Glycosyltransferase Family 4 J5A52_05070 PF00534 Glycosyl transferases group 1 J5A52_05075 PF02397 Bacterial sugar transferase J5A52_05090 PF16198 tRNA pseudouridylate synthase B C-terminal domain J5A52_05090 PF01509 TruB family pseudouridylate synthase (N terminal domain) J5A52_05125 PF06827 Zinc finger found in FPG and IleRS J5A52_05125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J5A52_05125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J5A52_05130 PF13419 Haloacid dehalogenase-like hydrolase J5A52_05155 PF01367 5'-3' exonuclease, C-terminal SAM fold J5A52_05155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J5A52_05155 PF00476 DNA polymerase family A J5A52_05170 PF04539 Sigma-70 region 3 J5A52_05170 PF03979 Sigma-70 factor, region 1.1 J5A52_05170 PF00140 Sigma-70 factor, region 1.2 J5A52_05170 PF04542 Sigma-70 region 2 J5A52_05170 PF04545 Sigma-70, region 4 J5A52_05175 PF08275 DNA primase catalytic core, N-terminal domain J5A52_05175 PF10410 DnaB-helicase binding domain of primase J5A52_05175 PF01807 CHC2 zinc finger J5A52_05190 PF01544 CorA-like Mg2+ transporter protein J5A52_05195 PF00929 Exonuclease