locus-tag class description FBF28_00005 PF00308 Bacterial dnaA protein FBF28_00005 PF08299 Bacterial dnaA protein helix-turn-helix FBF28_00005 PF11638 DnaA N-terminal domain FBF28_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FBF28_00010 PF02767 DNA polymerase III beta subunit, central domain FBF28_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FBF28_00105 PF00011 Hsp20/alpha crystallin family FBF28_00115 PF02590 Predicted SPOUT methyltransferase FBF28_00160 PF10458 Valyl tRNA synthetase tRNA binding arm FBF28_00160 PF00133 tRNA synthetases class I (I, L, M and V) FBF28_00160 PF08264 Anticodon-binding domain of tRNA FBF28_00170 PF00814 Glycoprotease family FBF28_00175 PF08245 Mur ligase middle domain FBF28_00175 PF02875 Mur ligase family, glutamate ligase domain FBF28_00175 PF01225 Mur ligase family, catalytic domain FBF28_00180 PF00149 Calcineurin-like phosphoesterase FBF28_00185 PF18080 Galactose mutarotase-like fold domain FBF28_00185 PF08305 NPCBM/NEW2 domain FBF28_00185 PF17974 Galactose-binding domain-like FBF28_00185 PF17451 Glycosyl hydrolase 101 beta sandwich domain FBF28_00185 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase FBF28_00185 PF12905 Endo-alpha-N-acetylgalactosaminidase FBF28_00215 PF02875 Mur ligase family, glutamate ligase domain FBF28_00215 PF01225 Mur ligase family, catalytic domain FBF28_00215 PF08245 Mur ligase middle domain FBF28_00225 PF00166 Chaperonin 10 Kd subunit FBF28_00230 PF00118 TCP-1/cpn60 chaperonin family FBF28_00240 PF01380 SIS domain FBF28_00240 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain FBF28_00245 PF12704 MacB-like periplasmic core domain FBF28_00245 PF02687 FtsX-like permease family FBF28_00250 PF00005 ABC transporter FBF28_00265 PF00317 Ribonucleotide reductase, all-alpha domain FBF28_00265 PF03477 ATP cone domain FBF28_00265 PF02867 Ribonucleotide reductase, barrel domain FBF28_00270 PF00268 Ribonucleotide reductase, small chain FBF28_00280 PF06418 CTP synthase N-terminus FBF28_00280 PF00117 Glutamine amidotransferase class-I FBF28_00285 PF00750 tRNA synthetases class I (R) FBF28_00285 PF05746 DALR anticodon binding domain FBF28_00285 PF03485 Arginyl tRNA synthetase N terminal domain FBF28_00300 PF00696 Amino acid kinase family FBF28_00305 PF00929 Exonuclease FBF28_00310 PF04237 YjbR FBF28_00320 PF10410 DnaB-helicase binding domain of primase FBF28_00320 PF08275 DNA primase catalytic core, N-terminal domain FBF28_00320 PF01807 CHC2 zinc finger FBF28_00325 PF04545 Sigma-70, region 4 FBF28_00325 PF03979 Sigma-70 factor, region 1.1 FBF28_00325 PF00140 Sigma-70 factor, region 1.2 FBF28_00325 PF04542 Sigma-70 region 2 FBF28_00325 PF04539 Sigma-70 region 3 FBF28_00335 PF01367 5'-3' exonuclease, C-terminal SAM fold FBF28_00335 PF00476 DNA polymerase family A FBF28_00335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FBF28_00345 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FBF28_00345 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FBF28_00345 PF06827 Zinc finger found in FPG and IleRS FBF28_00360 PF01649 Ribosomal protein S20 FBF28_00370 PF01509 TruB family pseudouridylate synthase (N terminal domain) FBF28_00370 PF09157 Pseudouridine synthase II TruB, C-terminal FBF28_00370 PF16198 tRNA pseudouridylate synthase B C-terminal domain FBF28_00380 PF00312 Ribosomal protein S15 FBF28_00400 PF00013 KH domain FBF28_00400 PF00575 S1 RNA binding domain FBF28_00400 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FBF28_00400 PF01138 3' exoribonuclease family, domain 1 FBF28_00400 PF03725 3' exoribonuclease family, domain 2 FBF28_00410 PF03167 Uracil DNA glycosylase superfamily FBF28_00415 PF00753 Metallo-beta-lactamase superfamily FBF28_00415 PF17770 Ribonuclease J C-terminal domain FBF28_00415 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FBF28_00420 PF17854 FtsK alpha domain FBF28_00420 PF09397 Ftsk gamma domain FBF28_00420 PF01580 FtsK/SpoIIIE family FBF28_00420 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FBF28_00430 PF01842 ACT domain FBF28_00430 PF00800 Prephenate dehydratase FBF28_00435 PF01250 Ribosomal protein S6 FBF28_00440 PF00436 Single-strand binding protein family FBF28_00445 PF01084 Ribosomal protein S18 FBF28_00450 PF09285 Elongation factor P, C-terminal FBF28_00450 PF08207 Elongation factor P (EF-P) KOW-like domain FBF28_00450 PF01132 Elongation factor P (EF-P) OB domain FBF28_00455 PF01728 FtsJ-like methyltransferase FBF28_00455 PF01479 S4 domain FBF28_00460 PF01926 50S ribosome-binding GTPase FBF28_00460 PF06071 Protein of unknown function (DUF933) FBF28_00500 PF00437 Type II/IV secretion system protein FBF28_00500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FBF28_00505 PF00437 Type II/IV secretion system protein FBF28_00510 PF00482 Type II secretion system (T2SS), protein F FBF28_00515 PF00114 Pilin (bacterial filament) FBF28_00515 PF07963 Prokaryotic N-terminal methylation motif FBF28_00520 PF06750 Bacterial Peptidase A24 N-terminal domain FBF28_00520 PF01478 Type IV leader peptidase family FBF28_00545 PF00589 Phage integrase family FBF28_00545 PF02899 Phage integrase, N-terminal SAM-like domain FBF28_00550 PF00334 Nucleoside diphosphate kinase FBF28_00590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FBF28_00590 PF02824 TGS domain FBF28_00590 PF03129 Anticodon binding domain FBF28_00590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FBF28_00600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FBF28_00620 PF00830 Ribosomal L28 family FBF28_00625 PF02163 Peptidase family M50 FBF28_00635 PF00453 Ribosomal protein L20 FBF28_00640 PF01632 Ribosomal protein L35 FBF28_00645 PF05198 Translation initiation factor IF-3, N-terminal domain FBF28_00645 PF00707 Translation initiation factor IF-3, C-terminal domain FBF28_00650 PF01078 Magnesium chelatase, subunit ChlI FBF28_00650 PF13335 Magnesium chelatase, subunit ChlI C-terminal FBF28_00685 PF00204 DNA gyrase B FBF28_00685 PF01751 Toprim domain FBF28_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_00685 PF00986 DNA gyrase B subunit, carboxyl terminus FBF28_00690 PF03989 DNA gyrase C-terminal domain, beta-propeller FBF28_00690 PF00521 DNA gyrase/topoisomerase IV, subunit A FBF28_00725 PF01180 Dihydroorotate dehydrogenase FBF28_00755 PF00480 ROK family FBF28_00765 PF00575 S1 RNA binding domain FBF28_00770 PF11987 Translation-initiation factor 2 FBF28_00770 PF04760 Translation initiation factor IF-2, N-terminal region FBF28_00770 PF00009 Elongation factor Tu GTP binding domain FBF28_00790 PF02911 Formyl transferase, C-terminal domain FBF28_00790 PF00551 Formyl transferase FBF28_00795 PF01327 Polypeptide deformylase FBF28_00800 PF18074 Primosomal protein N C-terminal domain FBF28_00800 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FBF28_00800 PF00271 Helicase conserved C-terminal domain FBF28_00800 PF04851 Type III restriction enzyme, res subunit FBF28_00800 PF17764 3′ DNA-binding domain (3′BD) FBF28_00810 PF02272 DHHA1 domain FBF28_00810 PF17768 RecJ OB domain FBF28_00810 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FBF28_00810 PF01368 DHH family FBF28_00825 PF09424 Yqey-like protein FBF28_00835 PF00557 Metallopeptidase family M24 FBF28_00840 PF02491 SHS2 domain inserted in FTSA FBF28_00845 PF12327 FtsZ family, C-terminal domain FBF28_00845 PF00091 Tubulin/FtsZ family, GTPase domain FBF28_00850 PF03477 ATP cone domain FBF28_00880 PF00459 Inositol monophosphatase family FBF28_00885 PF00133 tRNA synthetases class I (I, L, M and V) FBF28_00885 PF08264 Anticodon-binding domain of tRNA FBF28_00895 PF00483 Nucleotidyl transferase FBF28_00905 PF00829 Ribosomal prokaryotic L21 protein FBF28_00910 PF13614 AAA domain FBF28_00915 PF17762 HTH domain found in ParB protein FBF28_00915 PF02195 ParB-like nuclease domain FBF28_00935 PF13180 PDZ domain FBF28_00940 PF17827 PrmC N-terminal domain FBF28_00940 PF05175 Methyltransferase small domain FBF28_00950 PF00472 RF-1 domain FBF28_00950 PF03462 PCRF domain FBF28_00960 PF01197 Ribosomal protein L31 FBF28_00970 PF00318 Ribosomal protein S2 FBF28_00975 PF00889 Elongation factor TS FBF28_00990 PF02463 RecF/RecN/SMC N terminal domain FBF28_01000 PF01765 Ribosome recycling factor FBF28_01010 PF01255 Putative undecaprenyl diphosphate synthase FBF28_01015 PF02163 Peptidase family M50 FBF28_01015 PF13180 PDZ domain FBF28_01025 PF03129 Anticodon binding domain FBF28_01025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FBF28_01030 PF03449 Transcription elongation factor, N-terminal FBF28_01030 PF01272 Transcription elongation factor, GreA/GreB, C-term FBF28_01045 PF00571 CBS domain FBF28_01045 PF03471 Transporter associated domain FBF28_01050 PF02687 FtsX-like permease family FBF28_01050 PF00005 ABC transporter FBF28_01050 PF12704 MacB-like periplasmic core domain FBF28_01055 PF00005 ABC transporter FBF28_01060 PF03551 Transcriptional regulator PadR-like family FBF28_01070 PF02673 Bacitracin resistance protein BacA FBF28_01075 PF09383 NIL domain FBF28_01075 PF00005 ABC transporter FBF28_01080 PF12704 MacB-like periplasmic core domain FBF28_01080 PF02687 FtsX-like permease family FBF28_01095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FBF28_01095 PF02403 Seryl-tRNA synthetase N-terminal domain FBF28_01105 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus FBF28_01105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FBF28_01110 PF02810 SEC-C motif FBF28_01110 PF07517 SecA DEAD-like domain FBF28_01110 PF01043 SecA preprotein cross-linking domain FBF28_01110 PF07516 SecA Wing and Scaffold domain FBF28_01125 PF08245 Mur ligase middle domain FBF28_01145 PF00472 RF-1 domain FBF28_01145 PF03462 PCRF domain FBF28_01155 PF00005 ABC transporter FBF28_01160 PF18075 FtsX extracellular domain FBF28_01160 PF02687 FtsX-like permease family FBF28_01165 PF05257 CHAP domain FBF28_01170 PF03572 Peptidase family S41 FBF28_01170 PF01471 Putative peptidoglycan binding domain FBF28_01170 PF17820 PDZ domain FBF28_01175 PF00072 Response regulator receiver domain FBF28_01175 PF00486 Transcriptional regulatory protein, C terminal FBF28_01180 PF01016 Ribosomal L27 protein FBF28_01200 PF02601 Exonuclease VII, large subunit FBF28_01200 PF13742 OB-fold nucleic acid binding domain FBF28_01220 PF00512 His Kinase A (phospho-acceptor) domain FBF28_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_01220 PF00672 HAMP domain FBF28_01225 PF00072 Response regulator receiver domain FBF28_01225 PF00486 Transcriptional regulatory protein, C terminal FBF28_01230 PF02565 Recombination protein O C terminal FBF28_01230 PF11967 Recombination protein O N terminal FBF28_01240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FBF28_01240 PF03129 Anticodon binding domain FBF28_01285 PF01933 Uncharacterised protein family UPF0052 FBF28_01295 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FBF28_01295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FBF28_01305 PF00075 RNase H FBF28_01315 PF14493 Helix-turn-helix domain FBF28_01315 PF05970 PIF1-like helicase FBF28_01320 PF00232 Glycosyl hydrolase family 1 FBF28_01325 PF02381 MraZ protein, putative antitoxin-like FBF28_01330 PF01795 MraW methylase family FBF28_01340 PF00905 Penicillin binding protein transpeptidase domain FBF28_01340 PF03717 Penicillin-binding Protein dimerisation domain FBF28_01345 PF00953 Glycosyl transferase family 4 FBF28_01350 PF01098 Cell cycle protein FBF28_01355 PF04101 Glycosyltransferase family 28 C-terminal domain FBF28_01355 PF03033 Glycosyltransferase family 28 N-terminal domain FBF28_01385 PF04542 Sigma-70 region 2 FBF28_01385 PF00140 Sigma-70 factor, region 1.2 FBF28_01385 PF04539 Sigma-70 region 3 FBF28_01385 PF04545 Sigma-70, region 4 FBF28_01390 PF13368 Topoisomerase C-terminal repeat FBF28_01390 PF01751 Toprim domain FBF28_01390 PF01131 DNA topoisomerase FBF28_01405 PF02481 DNA recombination-mediator protein A FBF28_01430 PF03773 Predicted permease FBF28_01440 PF01195 Peptidyl-tRNA hydrolase FBF28_01445 PF02492 CobW/HypB/UreG, nucleotide-binding domain FBF28_01445 PF07683 Cobalamin synthesis protein cobW C-terminal domain FBF28_01465 PF01938 TRAM domain FBF28_01465 PF05958 tRNA (Uracil-5-)-methyltransferase FBF28_01485 PF00293 NUDIX domain FBF28_01490 PF00690 Cation transporter/ATPase, N-terminus FBF28_01490 PF00689 Cation transporting ATPase, C-terminus FBF28_01495 PF00005 ABC transporter FBF28_01550 PF13673 Acetyltransferase (GNAT) domain FBF28_01550 PF04229 GrpB protein FBF28_01555 PF00672 HAMP domain FBF28_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_01555 PF00512 His Kinase A (phospho-acceptor) domain FBF28_01560 PF00072 Response regulator receiver domain FBF28_01560 PF00486 Transcriptional regulatory protein, C terminal FBF28_01565 PF01272 Transcription elongation factor, GreA/GreB, C-term FBF28_01565 PF03449 Transcription elongation factor, N-terminal FBF28_01570 PF00512 His Kinase A (phospho-acceptor) domain FBF28_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_01575 PF00486 Transcriptional regulatory protein, C terminal FBF28_01575 PF00072 Response regulator receiver domain FBF28_01585 PF00005 ABC transporter FBF28_01585 PF13732 Domain of unknown function (DUF4162) FBF28_01600 PF01406 tRNA synthetases class I (C) catalytic domain FBF28_01615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FBF28_01615 PF01926 50S ribosome-binding GTPase FBF28_01625 PF00849 RNA pseudouridylate synthase FBF28_01625 PF01479 S4 domain FBF28_01630 PF00072 Response regulator receiver domain FBF28_01630 PF00486 Transcriptional regulatory protein, C terminal FBF28_01635 PF00672 HAMP domain FBF28_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_01635 PF00512 His Kinase A (phospho-acceptor) domain FBF28_01635 PF00989 PAS fold FBF28_01645 PF12704 MacB-like periplasmic core domain FBF28_01645 PF02687 FtsX-like permease family FBF28_01645 PF00005 ABC transporter FBF28_01650 PF13508 Acetyltransferase (GNAT) domain FBF28_01650 PF00583 Acetyltransferase (GNAT) family FBF28_01740 PF00005 ABC transporter FBF28_01770 PF00072 Response regulator receiver domain FBF28_01770 PF00486 Transcriptional regulatory protein, C terminal FBF28_01775 PF00512 His Kinase A (phospho-acceptor) domain FBF28_01775 PF00989 PAS fold FBF28_01775 PF00672 HAMP domain FBF28_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_01775 PF18698 Histidine kinase sensor domain FBF28_01780 PF17479 Protein of unknown function (DUF3048) C-terminal domain FBF28_01780 PF11258 Protein of unknown function (DUF3048) N-terminal domain FBF28_01785 PF00749 tRNA synthetases class I (E and Q), catalytic domain FBF28_01825 PF02557 D-alanyl-D-alanine carboxypeptidase FBF28_01830 PF02557 D-alanyl-D-alanine carboxypeptidase FBF28_01835 PF03372 Endonuclease/Exonuclease/phosphatase family FBF28_01840 PF13439 Glycosyltransferase Family 4 FBF28_01840 PF00534 Glycosyl transferases group 1 FBF28_01845 PF13439 Glycosyltransferase Family 4 FBF28_01845 PF00534 Glycosyl transferases group 1 FBF28_01850 PF01668 SmpB protein FBF28_01865 PF00005 ABC transporter FBF28_01865 PF12848 ABC transporter FBF28_01870 PF00462 Glutaredoxin FBF28_01885 PF00119 ATP synthase A chain FBF28_01895 PF00430 ATP synthase B/B' CF(0) FBF28_01905 PF02874 ATP synthase alpha/beta family, beta-barrel domain FBF28_01905 PF00306 ATP synthase alpha/beta chain, C terminal domain FBF28_01905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FBF28_01910 PF00231 ATP synthase FBF28_01920 PF02874 ATP synthase alpha/beta family, beta-barrel domain FBF28_01920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FBF28_01925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FBF28_01930 PF01207 Dihydrouridine synthase (Dus) FBF28_01935 PF13784 Fic/DOC family N-terminal FBF28_01935 PF02661 Fic/DOC family FBF28_01940 PF00580 UvrD/REP helicase N-terminal domain FBF28_01940 PF13361 UvrD-like helicase C-terminal domain FBF28_01970 PF00005 ABC transporter FBF28_01975 PF13662 Toprim domain FBF28_01975 PF02132 RecR protein FBF28_01980 PF02575 YbaB/EbfC DNA-binding family FBF28_01990 PF03796 DnaB-like helicase C terminal domain FBF28_01990 PF00772 DnaB-like helicase N terminal domain FBF28_01995 PF12169 DNA polymerase III subunits gamma and tau domain III FBF28_02010 PF16320 Ribosomal protein L7/L12 dimerisation domain FBF28_02010 PF00542 Ribosomal protein L7/L12 C-terminal domain FBF28_02015 PF00466 Ribosomal protein L10 FBF28_02020 PF00687 Ribosomal protein L1p/L10e family FBF28_02030 PF00113 Enolase, C-terminal TIM barrel domain FBF28_02030 PF03952 Enolase, N-terminal domain FBF28_02035 PF01300 Telomere recombination FBF28_02040 PF00298 Ribosomal protein L11, RNA binding domain FBF28_02040 PF03946 Ribosomal protein L11, N-terminal domain FBF28_02050 PF02357 Transcription termination factor nusG FBF28_02050 PF00467 KOW motif FBF28_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_02060 PF00672 HAMP domain FBF28_02060 PF18698 Histidine kinase sensor domain FBF28_02060 PF00989 PAS fold FBF28_02060 PF00512 His Kinase A (phospho-acceptor) domain FBF28_02075 PF01345 Domain of unknown function DUF11 FBF28_02075 PF03504 Chlamydia cysteine-rich outer membrane protein 6 FBF28_02085 PF13439 Glycosyltransferase Family 4 FBF28_02085 PF00534 Glycosyl transferases group 1 FBF28_02100 PF00471 Ribosomal protein L33 FBF28_02105 PF00881 Nitroreductase family FBF28_02150 PF09115 DNA polymerase III, delta subunit, C terminal FBF28_02155 PF01479 S4 domain FBF28_02155 PF00849 RNA pseudouridylate synthase FBF28_02160 PF00579 tRNA synthetases class I (W and Y) FBF28_02170 PF12697 Alpha/beta hydrolase family FBF28_02175 PF00380 Ribosomal protein S9/S16 FBF28_02180 PF00572 Ribosomal protein L13 FBF28_02185 PF01196 Ribosomal protein L17 FBF28_02190 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FBF28_02190 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FBF28_02190 PF01000 RNA polymerase Rpb3/RpoA insert domain FBF28_02195 PF01479 S4 domain FBF28_02195 PF00163 Ribosomal protein S4/S9 N-terminal domain FBF28_02200 PF00411 Ribosomal protein S11 FBF28_02205 PF00416 Ribosomal protein S13/S18 FBF28_02210 PF00444 Ribosomal protein L36 FBF28_02215 PF01176 Translation initiation factor 1A / IF-1 FBF28_02220 PF00344 SecY translocase FBF28_02230 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FBF28_02235 PF00333 Ribosomal protein S5, N-terminal domain FBF28_02235 PF03719 Ribosomal protein S5, C-terminal domain FBF28_02245 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FBF28_02250 PF00347 Ribosomal protein L6 FBF28_02260 PF00410 Ribosomal protein S8 FBF28_02265 PF00253 Ribosomal protein S14p/S29e FBF28_02270 PF00281 Ribosomal protein L5 FBF28_02270 PF00673 ribosomal L5P family C-terminus FBF28_02275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FBF28_02275 PF00467 KOW motif FBF28_02280 PF00238 Ribosomal protein L14p/L23e FBF28_02285 PF00366 Ribosomal protein S17 FBF28_02290 PF00831 Ribosomal L29 protein FBF28_02295 PF00252 Ribosomal protein L16p/L10e FBF28_02300 PF00189 Ribosomal protein S3, C-terminal domain FBF28_02300 PF07650 KH domain FBF28_02305 PF00237 Ribosomal protein L22p/L17e FBF28_02310 PF00203 Ribosomal protein S19 FBF28_02315 PF03947 Ribosomal Proteins L2, C-terminal domain FBF28_02315 PF00181 Ribosomal Proteins L2, RNA binding domain FBF28_02320 PF00276 Ribosomal protein L23 FBF28_02325 PF00573 Ribosomal protein L4/L1 family FBF28_02330 PF00297 Ribosomal protein L3 FBF28_02340 PF00009 Elongation factor Tu GTP binding domain FBF28_02340 PF03764 Elongation factor G, domain IV FBF28_02340 PF14492 Elongation Factor G, domain II FBF28_02340 PF00679 Elongation factor G C-terminus FBF28_02340 PF03144 Elongation factor Tu domain 2 FBF28_02350 PF04461 Protein of unknown function (DUF520) FBF28_02355 PF00177 Ribosomal protein S7p/S5e FBF28_02360 PF00164 Ribosomal protein S12/S23 FBF28_02365 PF04998 RNA polymerase Rpb1, domain 5 FBF28_02365 PF05000 RNA polymerase Rpb1, domain 4 FBF28_02365 PF04983 RNA polymerase Rpb1, domain 3 FBF28_02365 PF00623 RNA polymerase Rpb1, domain 2 FBF28_02365 PF04997 RNA polymerase Rpb1, domain 1 FBF28_02370 PF00562 RNA polymerase Rpb2, domain 6 FBF28_02370 PF04565 RNA polymerase Rpb2, domain 3 FBF28_02370 PF04563 RNA polymerase beta subunit FBF28_02370 PF04560 RNA polymerase Rpb2, domain 7 FBF28_02370 PF04561 RNA polymerase Rpb2, domain 2 FBF28_02370 PF10385 RNA polymerase beta subunit external 1 domain FBF28_02380 PF02223 Thymidylate kinase FBF28_02390 PF00186 Dihydrofolate reductase FBF28_02395 PF00303 Thymidylate synthase FBF28_02400 PF00574 Clp protease FBF28_02410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FBF28_02410 PF05698 Bacterial trigger factor protein (TF) C-terminus FBF28_02410 PF05697 Bacterial trigger factor protein (TF) FBF28_02415 PF13393 Histidyl-tRNA synthetase FBF28_02415 PF03129 Anticodon binding domain FBF28_02445 PF01565 FAD binding domain FBF28_02445 PF02913 FAD linked oxidases, C-terminal domain FBF28_02465 PF00929 Exonuclease FBF28_02475 PF01204 Trehalase FBF28_02480 PF00004 ATPase family associated with various cellular activities (AAA) FBF28_02480 PF12002 MgsA AAA+ ATPase C terminal FBF28_02480 PF16193 AAA C-terminal domain FBF28_02490 PF01820 D-ala D-ala ligase N-terminus FBF28_02490 PF07478 D-ala D-ala ligase C-terminus FBF28_02495 PF16200 C-terminal region of band_7 FBF28_02495 PF01145 SPFH domain / Band 7 family FBF28_02500 PF12697 Alpha/beta hydrolase family FBF28_02545 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FBF28_02560 PF00128 Alpha amylase, catalytic domain FBF28_02580 PF00271 Helicase conserved C-terminal domain FBF28_02580 PF17191 RecG wedge domain FBF28_02580 PF00270 DEAD/DEAH box helicase FBF28_02590 PF01479 S4 domain FBF28_02590 PF00579 tRNA synthetases class I (W and Y) FBF28_02595 PF00905 Penicillin binding protein transpeptidase domain FBF28_02595 PF00912 Transglycosylase FBF28_02605 PF18073 Rubredoxin metal binding domain FBF28_02615 PF00004 ATPase family associated with various cellular activities (AAA) FBF28_02615 PF10431 C-terminal, D2-small domain, of ClpB protein FBF28_02615 PF02861 Clp amino terminal domain, pathogenicity island component FBF28_02615 PF17871 AAA lid domain FBF28_02615 PF07724 AAA domain (Cdc48 subfamily) FBF28_02620 PF00575 S1 RNA binding domain FBF28_02620 PF13184 NusA-like KH domain FBF28_02620 PF08529 NusA N-terminal domain FBF28_02630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FBF28_02630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FBF28_02635 PF02824 TGS domain FBF28_02635 PF13291 ACT domain FBF28_02635 PF04607 Region found in RelA / SpoT proteins FBF28_02640 PF00719 Inorganic pyrophosphatase FBF28_02645 PF07992 Pyridine nucleotide-disulphide oxidoreductase FBF28_02650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FBF28_02655 PF00664 ABC transporter transmembrane region FBF28_02655 PF00005 ABC transporter FBF28_02660 PF01588 Putative tRNA binding domain FBF28_02660 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FBF28_02660 PF03483 B3/4 domain FBF28_02660 PF03484 tRNA synthetase B5 domain FBF28_02660 PF03147 Ferredoxin-fold anticodon binding domain FBF28_02695 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FBF28_02695 PF01409 tRNA synthetases class II core domain (F) FBF28_02705 PF00230 Major intrinsic protein FBF28_02740 PF01746 tRNA (Guanine-1)-methyltransferase FBF28_02750 PF02618 YceG-like family FBF28_02755 PF03652 Holliday junction resolvase FBF28_02765 PF02491 SHS2 domain inserted in FTSA FBF28_02775 PF01411 tRNA synthetases class II (A) FBF28_02775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FBF28_02780 PF12354 Bacterial adhesion/invasion protein N terminal FBF28_02780 PF00746 LPXTG cell wall anchor motif FBF28_02780 PF12799 Leucine Rich repeats (2 copies) FBF28_02780 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) FBF28_02780 PF08191 LRR adjacent FBF28_02785 PF00886 Ribosomal protein S16 FBF28_02810 PF02811 PHP domain FBF28_02825 PF00266 Aminotransferase class-V FBF28_02840 PF01026 TatD related DNase FBF28_02845 PF08264 Anticodon-binding domain of tRNA FBF28_02845 PF09334 tRNA synthetases class I (M) FBF28_02865 PF00398 Ribosomal RNA adenine dimethylase FBF28_02880 PF00580 UvrD/REP helicase N-terminal domain FBF28_02880 PF13361 UvrD-like helicase C-terminal domain FBF28_02890 PF00121 Triosephosphate isomerase FBF28_02895 PF00162 Phosphoglycerate kinase FBF28_02900 PF02887 Pyruvate kinase, alpha/beta domain FBF28_02900 PF00224 Pyruvate kinase, barrel domain FBF28_02900 PF00391 PEP-utilising enzyme, mobile domain FBF28_02905 PF00035 Double-stranded RNA binding motif FBF28_02905 PF14622 Ribonuclease-III-like FBF28_02910 PF00293 NUDIX domain FBF28_02915 PF01029 NusB family FBF28_02925 PF08264 Anticodon-binding domain of tRNA FBF28_02925 PF00133 tRNA synthetases class I (I, L, M and V) FBF28_02925 PF09334 tRNA synthetases class I (M) FBF28_02925 PF13603 Leucyl-tRNA synthetase, Domain 2 FBF28_02935 PF08245 Mur ligase middle domain FBF28_02935 PF02875 Mur ligase family, glutamate ligase domain FBF28_02935 PF01225 Mur ligase family, catalytic domain FBF28_02945 PF01515 Phosphate acetyl/butaryl transferase FBF28_02960 PF01725 Ham1 family FBF28_02970 PF00533 BRCA1 C Terminus (BRCT) domain FBF28_02970 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FBF28_02970 PF03120 NAD-dependent DNA ligase OB-fold domain FBF28_02970 PF01653 NAD-dependent DNA ligase adenylation domain FBF28_02970 PF12826 Helix-hairpin-helix motif FBF28_02980 PF01435 Peptidase family M48 FBF28_02985 PF04011 LemA family FBF28_02995 PF00005 ABC transporter FBF28_03005 PF05014 Nucleoside 2-deoxyribosyltransferase FBF28_03015 PF02223 Thymidylate kinase FBF28_03020 PF06508 Queuosine biosynthesis protein QueC FBF28_03025 PF01725 Ham1 family FBF28_03030 PF01227 GTP cyclohydrolase I FBF28_03075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FBF28_03085 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV FBF28_03090 PF08334 Type II secretion system (T2SS), protein G FBF28_03090 PF07963 Prokaryotic N-terminal methylation motif FBF28_03095 PF08459 UvrC Helix-hairpin-helix N-terminal FBF28_03095 PF02151 UvrB/uvrC motif FBF28_03095 PF01541 GIY-YIG catalytic domain FBF28_03115 PF07733 Bacterial DNA polymerase III alpha NTPase domain FBF28_03115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FBF28_03115 PF14579 Helix-hairpin-helix motif FBF28_03115 PF02811 PHP domain FBF28_03125 PF00483 Nucleotidyl transferase FBF28_03135 PF02934 GatB/GatE catalytic domain FBF28_03135 PF02637 GatB domain FBF28_03145 PF01425 Amidase FBF28_03150 PF02686 Glu-tRNAGln amidotransferase C subunit FBF28_03165 PF17757 UvrB interaction domain FBF28_03165 PF02151 UvrB/uvrC motif FBF28_03165 PF12344 Ultra-violet resistance protein B FBF28_03165 PF04851 Type III restriction enzyme, res subunit FBF28_03165 PF00271 Helicase conserved C-terminal domain FBF28_03170 PF03641 Possible lysine decarboxylase FBF28_03180 PF00294 pfkB family carbohydrate kinase FBF28_03185 PF01116 Fructose-bisphosphate aldolase class-II FBF28_03190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FBF28_03190 PF02779 Transketolase, pyrimidine binding domain FBF28_03190 PF02780 Transketolase, C-terminal domain FBF28_03195 PF00456 Transketolase, thiamine diphosphate binding domain FBF28_03205 PF02502 Ribose/Galactose Isomerase FBF28_03215 PF11838 ERAP1-like C-terminal domain FBF28_03215 PF01433 Peptidase family M1 domain FBF28_03225 PF01351 Ribonuclease HII FBF28_03235 PF01245 Ribosomal protein L19 FBF28_03240 PF03949 Malic enzyme, NAD binding domain FBF28_03240 PF00390 Malic enzyme, N-terminal domain FBF28_03245 PF00437 Type II/IV secretion system protein FBF28_03245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FBF28_03265 PF00338 Ribosomal protein S10p/S20e FBF28_03275 PF00056 lactate/malate dehydrogenase, NAD binding domain FBF28_03275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FBF28_03280 PF00009 Elongation factor Tu GTP binding domain FBF28_03280 PF03144 Elongation factor Tu domain 2 FBF28_03280 PF03143 Elongation factor Tu C-terminal domain FBF28_03290 PF01380 SIS domain FBF28_03295 PF01702 Queuine tRNA-ribosyltransferase FBF28_03300 PF02806 Alpha amylase, C-terminal all-beta domain FBF28_03300 PF00128 Alpha amylase, catalytic domain FBF28_03300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FBF28_03305 PF03167 Uracil DNA glycosylase superfamily FBF28_03325 PF00293 NUDIX domain FBF28_03330 PF01327 Polypeptide deformylase FBF28_03335 PF00664 ABC transporter transmembrane region FBF28_03335 PF00005 ABC transporter FBF28_03340 PF09335 SNARE associated Golgi protein FBF28_03345 PF00005 ABC transporter FBF28_03345 PF17760 UvrA interaction domain FBF28_03345 PF17755 UvrA DNA-binding domain FBF28_03365 PF00005 ABC transporter FBF28_03380 PF00929 Exonuclease FBF28_03380 PF08411 Exonuclease C-terminal FBF28_03385 PF09269 Domain of unknown function (DUF1967) FBF28_03385 PF01926 50S ribosome-binding GTPase FBF28_03385 PF01018 GTP1/OBG FBF28_03390 PF05257 CHAP domain FBF28_03390 PF01476 LysM domain FBF28_03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_03420 PF16736 Single Cache-like FBF28_03420 PF00989 PAS fold FBF28_03420 PF00512 His Kinase A (phospho-acceptor) domain FBF28_03430 PF00158 Sigma-54 interaction domain FBF28_03430 PF02954 Bacterial regulatory protein, Fis family FBF28_03430 PF00072 Response regulator receiver domain FBF28_03435 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FBF28_03435 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FBF28_03470 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FBF28_03475 PF00464 Serine hydroxymethyltransferase FBF28_03500 PF14245 Type IV pilin PilA FBF28_03500 PF07963 Prokaryotic N-terminal methylation motif FBF28_03505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FBF28_03505 PF01565 FAD binding domain FBF28_03525 PF10431 C-terminal, D2-small domain, of ClpB protein FBF28_03525 PF00004 ATPase family associated with various cellular activities (AAA) FBF28_03525 PF02861 Clp amino terminal domain, pathogenicity island component FBF28_03525 PF17871 AAA lid domain FBF28_03525 PF07724 AAA domain (Cdc48 subfamily) FBF28_03535 PF08245 Mur ligase middle domain FBF28_03535 PF08353 Domain of unknown function (DUF1727) FBF28_03540 PF07685 CobB/CobQ-like glutamine amidotransferase domain FBF28_03575 PF00300 Histidine phosphatase superfamily (branch 1) FBF28_03580 PF00293 NUDIX domain FBF28_03585 PF01966 HD domain FBF28_03585 PF00013 KH domain FBF28_03585 PF12072 Domain of unknown function (DUF3552) FBF28_03590 PF00814 Glycoprotease family FBF28_03595 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FBF28_03625 PF00482 Type II secretion system (T2SS), protein F FBF28_03630 PF00437 Type II/IV secretion system protein FBF28_03630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FBF28_03645 PF00485 Phosphoribulokinase / Uridine kinase family FBF28_03650 PF02390 Putative methyltransferase FBF28_03655 PF00924 Mechanosensitive ion channel FBF28_03680 PF00633 Helix-hairpin-helix motif FBF28_03680 PF00730 HhH-GPD superfamily base excision DNA repair protein FBF28_03680 PF14815 NUDIX domain FBF28_03680 PF10576 Iron-sulfur binding domain of endonuclease III FBF28_03695 PF00293 NUDIX domain FBF28_03700 PF00106 short chain dehydrogenase FBF28_03710 PF01336 OB-fold nucleic acid binding domain FBF28_03710 PF02938 GAD domain FBF28_03710 PF00152 tRNA synthetases class II (D, K and N) FBF28_03715 PF17864 RuvB AAA lid domain FBF28_03715 PF05491 RuvB C-terminal winged helix domain FBF28_03715 PF05496 Holliday junction DNA helicase RuvB P-loop domain FBF28_03730 PF07499 RuvA, C-terminal domain FBF28_03730 PF01330 RuvA N terminal domain FBF28_03735 PF00912 Transglycosylase FBF28_03735 PF00905 Penicillin binding protein transpeptidase domain FBF28_03740 PF02075 Crossover junction endodeoxyribonuclease RuvC FBF28_03750 PF01709 Transcriptional regulator FBF28_03780 PF08443 RimK-like ATP-grasp domain FBF28_03780 PF18030 RimK PreATP-grasp domain FBF28_03810 PF00226 DnaJ domain FBF28_03810 PF00684 DnaJ central domain FBF28_03810 PF01556 DnaJ C terminal domain FBF28_03825 PF00012 Hsp70 protein FBF28_03830 PF01025 GrpE FBF28_03835 PF01628 HrcA protein C terminal domain FBF28_03845 PF00625 Guanylate kinase FBF28_03860 PF00009 Elongation factor Tu GTP binding domain FBF28_03860 PF03144 Elongation factor Tu domain 2 FBF28_03860 PF06421 GTP-binding protein LepA C-terminus FBF28_03860 PF00679 Elongation factor G C-terminus FBF28_03880 PF03023 Lipid II flippase MurJ FBF28_03885 PF01434 Peptidase family M41 FBF28_03885 PF17862 AAA+ lid domain FBF28_03885 PF00004 ATPase family associated with various cellular activities (AAA) FBF28_03890 PF11734 TilS substrate C-terminal domain FBF28_03890 PF01171 PP-loop family FBF28_03915 PF07992 Pyridine nucleotide-disulphide oxidoreductase FBF28_03915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FBF28_03920 PF08245 Mur ligase middle domain FBF28_03930 PF03091 CutA1 divalent ion tolerance protein FBF28_04000 PF01225 Mur ligase family, catalytic domain FBF28_04000 PF08245 Mur ligase middle domain FBF28_04000 PF02875 Mur ligase family, glutamate ligase domain FBF28_04005 PF02631 RecX family FBF28_04015 PF00154 recA bacterial DNA recombination protein FBF28_04030 PF00571 CBS domain FBF28_04030 PF03471 Transporter associated domain FBF28_04035 PF13462 Thioredoxin FBF28_04035 PF06965 Na+/H+ antiporter 1 FBF28_04045 PF07690 Major Facilitator Superfamily FBF28_04060 PF01061 ABC-2 type transporter FBF28_04065 PF00005 ABC transporter FBF28_04085 PF00696 Amino acid kinase family FBF28_04090 PF03606 C4-dicarboxylate anaerobic carrier FBF28_04095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FBF28_04095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FBF28_04130 PF00271 Helicase conserved C-terminal domain FBF28_04140 PF00005 ABC transporter FBF28_04140 PF00664 ABC transporter transmembrane region FBF28_04145 PF00664 ABC transporter transmembrane region FBF28_04145 PF00005 ABC transporter FBF28_04155 PF00293 NUDIX domain FBF28_04175 PF00005 ABC transporter FBF28_04180 PF00528 Binding-protein-dependent transport system inner membrane component FBF28_04185 PF00497 Bacterial extracellular solute-binding proteins, family 3 FBF28_04190 PF00884 Sulfatase FBF28_04195 PF16363 GDP-mannose 4,6 dehydratase FBF28_04210 PF07724 AAA domain (Cdc48 subfamily) FBF28_04210 PF00004 ATPase family associated with various cellular activities (AAA) FBF28_04210 PF17871 AAA lid domain FBF28_04210 PF02861 Clp amino terminal domain, pathogenicity island component FBF28_04210 PF10431 C-terminal, D2-small domain, of ClpB protein FBF28_04220 PF00005 ABC transporter FBF28_04240 PF01522 Polysaccharide deacetylase FBF28_04240 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain FBF28_04245 PF02594 Uncharacterised ACR, YggU family COG1872 FBF28_04250 PF01381 Helix-turn-helix FBF28_04255 PF04851 Type III restriction enzyme, res subunit FBF28_04255 PF08774 VRR-NUC domain FBF28_04270 PF01555 DNA methylase FBF28_04270 PF18273 Type III R-M EcoP15I C-terminal domain FBF28_04280 PF04002 RadC-like JAB domain FBF28_04280 PF00633 Helix-hairpin-helix motif FBF28_04295 PF00970 Oxidoreductase FAD-binding domain FBF28_04295 PF00042 Globin FBF28_04295 PF00175 Oxidoreductase NAD-binding domain FBF28_04305 PF13597 Anaerobic ribonucleoside-triphosphate reductase FBF28_04305 PF03477 ATP cone domain FBF28_04320 PF13732 Domain of unknown function (DUF4162) FBF28_04320 PF00005 ABC transporter FBF28_04325 PF00512 His Kinase A (phospho-acceptor) domain FBF28_04325 PF00672 HAMP domain FBF28_04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_04330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FBF28_04330 PF00512 His Kinase A (phospho-acceptor) domain FBF28_04330 PF00672 HAMP domain FBF28_04335 PF00486 Transcriptional regulatory protein, C terminal FBF28_04335 PF00072 Response regulator receiver domain FBF28_04340 PF17676 LD-carboxypeptidase C-terminal domain FBF28_04340 PF02016 LD-carboxypeptidase N-terminal domain FBF28_04350 PF17676 LD-carboxypeptidase C-terminal domain FBF28_04350 PF02016 LD-carboxypeptidase N-terminal domain FBF28_04360 PF00440 Bacterial regulatory proteins, tetR family FBF28_04360 PF08361 MAATS-type transcriptional repressor, C-terminal region FBF28_04380 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase FBF28_04405 PF00717 Peptidase S24-like FBF28_04405 PF01726 LexA DNA binding domain FBF28_04415 PF02397 Bacterial sugar transferase FBF28_04420 PF13439 Glycosyltransferase Family 4 FBF28_04420 PF00534 Glycosyl transferases group 1 FBF28_04430 PF00483 Nucleotidyl transferase FBF28_04430 PF01050 Mannose-6-phosphate isomerase FBF28_04470 PF00535 Glycosyl transferase family 2 FBF28_04490 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 FBF28_04490 PF00535 Glycosyl transferase family 2 FBF28_04505 PF00535 Glycosyl transferase family 2 FBF28_04510 PF00005 ABC transporter FBF28_04520 PF00534 Glycosyl transferases group 1 FBF28_04520 PF13439 Glycosyltransferase Family 4 FBF28_04525 PF00862 Sucrose synthase FBF28_04525 PF00534 Glycosyl transferases group 1 FBF28_04540 PF02096 60Kd inner membrane protein FBF28_04545 PF00825 Ribonuclease P FBF28_04550 PF00468 Ribosomal protein L34