locus-tag class description BFO_0001 PF11638 DnaA N-terminal domain BFO_0001 PF00308 Bacterial dnaA protein BFO_0001 PF08299 Bacterial dnaA protein helix-turn-helix BFO_0003 PF01245 Ribosomal protein L19 BFO_0004 PF00933 Glycosyl hydrolase family 3 N terminal domain BFO_0007 PF01494 FAD binding domain BFO_0008 PF00109 Beta-ketoacyl synthase, N-terminal domain BFO_0008 PF02801 Beta-ketoacyl synthase, C-terminal domain BFO_0011 PF01431 Peptidase family M13 BFO_0011 PF05649 Peptidase family M13 BFO_0015 PF01032 FecCD transport family BFO_0016 PF00005 ABC transporter BFO_0019 PF00175 Oxidoreductase NAD-binding domain BFO_0019 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BFO_0020 PF01180 Dihydroorotate dehydrogenase BFO_0023 PF02308 MgtC family BFO_0025 PF01416 tRNA pseudouridine synthase BFO_0026 PF07685 CobB/CobQ-like glutamine amidotransferase domain BFO_0026 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BFO_0028 PF07679 Immunoglobulin I-set domain BFO_0028 PF00759 Glycosyl hydrolase family 9 BFO_0028 PF02018 Carbohydrate binding domain BFO_0028 PF02927 Cellulase N-terminal ig-like domain BFO_0030 PF07715 TonB-dependent Receptor Plug Domain BFO_0030 PF00593 TonB dependent receptor BFO_0033 PF00593 TonB dependent receptor BFO_0033 PF07715 TonB-dependent Receptor Plug Domain BFO_0036 PF00535 Glycosyl transferase family 2 BFO_0038 PF04122 Putative cell wall binding repeat 2 BFO_0038 PF08486 Stage II sporulation protein BFO_0039 PF07690 Major Facilitator Superfamily BFO_0040 PF07075 Protein of unknown function (DUF1343) BFO_0044 PF01380 SIS domain BFO_0056 PF01609 Transposase DDE domain BFO_0060 PF04055 Radical SAM superfamily BFO_0060 PF13186 Iron-sulfur cluster-binding domain BFO_0079 PF06463 Molybdenum Cofactor Synthesis C BFO_0079 PF04055 Radical SAM superfamily BFO_0088 PF03412 Peptidase C39 family BFO_0088 PF00005 ABC transporter BFO_0088 PF00664 ABC transporter transmembrane region BFO_0092 PF13439 Glycosyltransferase Family 4 BFO_0092 PF00534 Glycosyl transferases group 1 BFO_0102 PF00664 ABC transporter transmembrane region BFO_0102 PF00005 ABC transporter BFO_0102 PF03412 Peptidase C39 family BFO_0111 PF00005 ABC transporter BFO_0111 PF03412 Peptidase C39 family BFO_0111 PF00664 ABC transporter transmembrane region BFO_0118 PF00152 tRNA synthetases class II (D, K and N) BFO_0118 PF01336 OB-fold nucleic acid binding domain BFO_0119 PF00849 RNA pseudouridylate synthase BFO_0119 PF01479 S4 domain BFO_0120 PF00206 Lyase BFO_0120 PF08328 Adenylosuccinate lyase C-terminal BFO_0124 PF00005 ABC transporter BFO_0124 PF00664 ABC transporter transmembrane region BFO_0125 PF00664 ABC transporter transmembrane region BFO_0125 PF00005 ABC transporter BFO_0127 PF03605 Anaerobic c4-dicarboxylate membrane transporter BFO_0129 PF00117 Glutamine amidotransferase class-I BFO_0130 PF00425 chorismate binding enzyme BFO_0137 PF00849 RNA pseudouridylate synthase BFO_0141 PF17185 NlpE C-terminal OB domain BFO_0141 PF04170 NlpE N-terminal domain BFO_0143 PF01741 Large-conductance mechanosensitive channel, MscL BFO_0144 PF00293 NUDIX domain BFO_0145 PF06965 Na+/H+ antiporter 1 BFO_0146 PF00072 Response regulator receiver domain BFO_0146 PF04397 LytTr DNA-binding domain BFO_0147 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_0147 PF06580 Histidine kinase BFO_0152 PF12704 MacB-like periplasmic core domain BFO_0152 PF00005 ABC transporter BFO_0152 PF02687 FtsX-like permease family BFO_0160 PF00158 Sigma-54 interaction domain BFO_0160 PF00072 Response regulator receiver domain BFO_0160 PF02954 Bacterial regulatory protein, Fis family BFO_0161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_0161 PF00512 His Kinase A (phospho-acceptor) domain BFO_0162 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BFO_0162 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BFO_0170 PF13439 Glycosyltransferase Family 4 BFO_0170 PF00534 Glycosyl transferases group 1 BFO_0175 PF13193 AMP-binding enzyme C-terminal domain BFO_0175 PF00501 AMP-binding enzyme BFO_0179 PF01121 Dephospho-CoA kinase BFO_0181 PF02699 Preprotein translocase subunit BFO_0182 PF01029 NusB family BFO_0184 PF00710 Asparaginase, N-terminal BFO_0184 PF17763 Glutaminase/Asparaginase C-terminal domain BFO_0186 PF00722 Glycosyl hydrolases family 16 BFO_0188 PF07715 TonB-dependent Receptor Plug Domain BFO_0188 PF00593 TonB dependent receptor BFO_0193 PF00266 Aminotransferase class-V BFO_0195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BFO_0195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BFO_0195 PF01842 ACT domain BFO_0197 PF13419 Haloacid dehalogenase-like hydrolase BFO_0199 PF04542 Sigma-70 region 2 BFO_0199 PF08281 Sigma-70, region 4 BFO_0211 PF12826 Helix-hairpin-helix motif BFO_0211 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BFO_0211 PF03120 NAD-dependent DNA ligase OB-fold domain BFO_0211 PF01653 NAD-dependent DNA ligase adenylation domain BFO_0211 PF00533 BRCA1 C Terminus (BRCT) domain BFO_0213 PF00701 Dihydrodipicolinate synthetase family BFO_0214 PF00596 Class II Aldolase and Adducin N-terminal domain BFO_0215 PF06379 L-rhamnose-proton symport protein (RhaT) BFO_0216 PF06134 L-rhamnose isomerase (RhaA) BFO_0217 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BFO_0217 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BFO_0220 PF03129 Anticodon binding domain BFO_0220 PF09180 Prolyl-tRNA synthetase, C-terminal BFO_0220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BFO_0221 PF02548 Ketopantoate hydroxymethyltransferase BFO_0224 PF04011 LemA family BFO_0225 PF01435 Peptidase family M48 BFO_0226 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BFO_0226 PF01411 tRNA synthetases class II (A) BFO_0226 PF02272 DHHA1 domain BFO_0227 PF00162 Phosphoglycerate kinase BFO_0228 PF01554 MatE BFO_0229 PF00677 Lumazine binding domain BFO_0230 PF00365 Phosphofructokinase BFO_0237 PF00684 DnaJ central domain BFO_0237 PF01556 DnaJ C terminal domain BFO_0237 PF00226 DnaJ domain BFO_0238 PF01025 GrpE BFO_0239 PF13180 PDZ domain BFO_0239 PF17820 PDZ domain BFO_0240 PF00488 MutS domain V BFO_0240 PF01713 Smr domain BFO_0243 PF01168 Alanine racemase, N-terminal domain BFO_0245 PF13302 Acetyltransferase (GNAT) domain BFO_0251 PF17757 UvrB interaction domain BFO_0251 PF03461 TRCF domain BFO_0251 PF00271 Helicase conserved C-terminal domain BFO_0251 PF02559 CarD-like/TRCF domain BFO_0251 PF00270 DEAD/DEAH box helicase BFO_0253 PF01012 Electron transfer flavoprotein domain BFO_0253 PF00766 Electron transfer flavoprotein FAD-binding domain BFO_0254 PF01012 Electron transfer flavoprotein domain BFO_0256 PF00793 DAHP synthetase I family BFO_0261 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BFO_0261 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BFO_0269 PF00072 Response regulator receiver domain BFO_0269 PF00196 Bacterial regulatory proteins, luxR family BFO_0270 PF13492 GAF domain BFO_0270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_0270 PF07730 Histidine kinase BFO_0270 PF13185 GAF domain BFO_0271 PF13173 AAA domain BFO_0271 PF13635 Domain of unknown function (DUF4143) BFO_0272 PF06250 YhcG PDDEXK nuclease domain BFO_0272 PF17761 DUF1016 N-terminal domain BFO_0277 PF05656 Protein of unknown function (DUF805) BFO_0278 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) BFO_0278 PF07581 The GLUG motif BFO_0284 PF16363 GDP-mannose 4,6 dehydratase BFO_0286 PF00471 Ribosomal protein L33 BFO_0287 PF00830 Ribosomal L28 family BFO_0293 PF04073 Aminoacyl-tRNA editing domain BFO_0294 PF01048 Phosphorylase superfamily BFO_0298 PF07715 TonB-dependent Receptor Plug Domain BFO_0298 PF00593 TonB dependent receptor BFO_0300 PF02929 Beta galactosidase small chain BFO_0300 PF16353 Domain of unknown function(DUF4981) BFO_0300 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BFO_0300 PF02837 Glycosyl hydrolases family 2, sugar binding domain BFO_0300 PF00703 Glycosyl hydrolases family 2 BFO_0302 PF03956 Lysine exporter LysO BFO_0303 PF00753 Metallo-beta-lactamase superfamily BFO_0304 PF06803 Protein of unknown function (DUF1232) BFO_0306 PF02952 L-fucose isomerase, C-terminal domain BFO_0306 PF07881 L-fucose isomerase, first N-terminal domain BFO_0306 PF07882 L-fucose isomerase, second N-terminal domain BFO_0307 PF07690 Major Facilitator Superfamily BFO_0308 PF01467 Cytidylyltransferase-like BFO_0308 PF00294 pfkB family carbohydrate kinase BFO_0309 PF00483 Nucleotidyl transferase BFO_0311 PF00691 OmpA family BFO_0312 PF01578 Cytochrome C assembly protein BFO_0312 PF05140 ResB-like family BFO_0313 PF00326 Prolyl oligopeptidase family BFO_0313 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BFO_0315 PF17678 Glycosyl hydrolase family 92 N-terminal domain BFO_0315 PF07971 Glycosyl hydrolase family 92 BFO_0317 PF01554 MatE BFO_0318 PF02261 Aspartate decarboxylase BFO_0319 PF02569 Pantoate-beta-alanine ligase BFO_0320 PF00534 Glycosyl transferases group 1 BFO_0320 PF08323 Starch synthase catalytic domain BFO_0336 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_0337 PF00291 Pyridoxal-phosphate dependent enzyme BFO_0347 PF10502 Signal peptidase, peptidase S26 BFO_0374 PF10502 Signal peptidase, peptidase S26 BFO_0376 PF00535 Glycosyl transferase family 2 BFO_0377 PF10459 Peptidase S46 BFO_0380 PF17864 RuvB AAA lid domain BFO_0380 PF05491 RuvB C-terminal winged helix domain BFO_0380 PF05496 Holliday junction DNA helicase RuvB P-loop domain BFO_0387 PF00873 AcrB/AcrD/AcrF family BFO_0392 PF03458 UPF0126 domain BFO_0394 PF07715 TonB-dependent Receptor Plug Domain BFO_0394 PF00593 TonB dependent receptor BFO_0396 PF09424 Yqey-like protein BFO_0397 PF00091 Tubulin/FtsZ family, GTPase domain BFO_0397 PF12327 FtsZ family, C-terminal domain BFO_0398 PF02491 SHS2 domain inserted in FTSA BFO_0400 PF01225 Mur ligase family, catalytic domain BFO_0400 PF02875 Mur ligase family, glutamate ligase domain BFO_0400 PF08245 Mur ligase middle domain BFO_0402 PF01098 Cell cycle protein BFO_0403 PF08245 Mur ligase middle domain BFO_0403 PF02875 Mur ligase family, glutamate ligase domain BFO_0404 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BFO_0404 PF00953 Glycosyl transferase family 4 BFO_0405 PF01225 Mur ligase family, catalytic domain BFO_0405 PF02875 Mur ligase family, glutamate ligase domain BFO_0405 PF08245 Mur ligase middle domain BFO_0406 PF03717 Penicillin-binding Protein dimerisation domain BFO_0406 PF00905 Penicillin binding protein transpeptidase domain BFO_0408 PF01795 MraW methylase family BFO_0411 PF02502 Ribose/Galactose Isomerase BFO_0412 PF02779 Transketolase, pyrimidine binding domain BFO_0412 PF00456 Transketolase, thiamine diphosphate binding domain BFO_0412 PF02780 Transketolase, C-terminal domain BFO_0413 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BFO_0413 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BFO_0414 PF13419 Haloacid dehalogenase-like hydrolase BFO_0424 PF08281 Sigma-70, region 4 BFO_0424 PF04542 Sigma-70 region 2 BFO_0426 PF00834 Ribulose-phosphate 3 epimerase family BFO_0427 PF13567 Domain of unknown function (DUF4131) BFO_0427 PF00753 Metallo-beta-lactamase superfamily BFO_0427 PF03772 Competence protein BFO_0428 PF03979 Sigma-70 factor, region 1.1 BFO_0428 PF00140 Sigma-70 factor, region 1.2 BFO_0428 PF04542 Sigma-70 region 2 BFO_0428 PF04539 Sigma-70 region 3 BFO_0428 PF04545 Sigma-70, region 4 BFO_0430 PF17820 PDZ domain BFO_0430 PF13180 PDZ domain BFO_0437 PF00958 GMP synthase C terminal domain BFO_0437 PF00117 Glutamine amidotransferase class-I BFO_0437 PF02540 NAD synthase BFO_0440 PF08191 LRR adjacent BFO_0440 PF12799 Leucine Rich repeats (2 copies) BFO_0440 PF00746 LPXTG cell wall anchor motif BFO_0440 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) BFO_0440 PF12354 Bacterial adhesion/invasion protein N terminal BFO_0441 PF01435 Peptidase family M48 BFO_0442 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BFO_0442 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BFO_0443 PF01554 MatE BFO_0444 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BFO_0444 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BFO_0448 PF01523 Putative modulator of DNA gyrase BFO_0450 PF16353 Domain of unknown function(DUF4981) BFO_0450 PF00703 Glycosyl hydrolases family 2 BFO_0450 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BFO_0450 PF02837 Glycosyl hydrolases family 2, sugar binding domain BFO_0450 PF02929 Beta galactosidase small chain BFO_0451 PF01938 TRAM domain BFO_0451 PF04055 Radical SAM superfamily BFO_0451 PF00919 Uncharacterized protein family UPF0004 BFO_0457 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BFO_0458 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BFO_0458 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BFO_0462 PF02687 FtsX-like permease family BFO_0462 PF00005 ABC transporter BFO_0462 PF12704 MacB-like periplasmic core domain BFO_0463 PF12704 MacB-like periplasmic core domain BFO_0463 PF00005 ABC transporter BFO_0463 PF02687 FtsX-like permease family BFO_0464 PF00005 ABC transporter BFO_0466 PF00128 Alpha amylase, catalytic domain BFO_0466 PF09087 Cyclomaltodextrinase, N-terminal BFO_0466 PF10438 Cyclo-malto-dextrinase C-terminal domain BFO_0468 PF00905 Penicillin binding protein transpeptidase domain BFO_0468 PF00912 Transglycosylase BFO_0468 PF06832 Penicillin-Binding Protein C-terminus Family BFO_0469 PF00207 Alpha-2-macroglobulin family BFO_0469 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BFO_0469 PF17962 Bacterial macroglobulin domain 6 BFO_0469 PF01835 MG2 domain BFO_0469 PF07703 Alpha-2-macroglobulin bait region domain BFO_0469 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BFO_0469 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BFO_0469 PF07678 A-macroglobulin TED domain BFO_0469 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BFO_0471 PF00156 Phosphoribosyl transferase domain BFO_0473 PF00206 Lyase BFO_0475 PF13439 Glycosyltransferase Family 4 BFO_0475 PF00534 Glycosyl transferases group 1 BFO_0476 PF01693 Caulimovirus viroplasmin BFO_0479 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BFO_0481 PF00579 tRNA synthetases class I (W and Y) BFO_0482 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BFO_0482 PF01926 50S ribosome-binding GTPase BFO_0484 PF07650 KH domain BFO_0484 PF01926 50S ribosome-binding GTPase BFO_0485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BFO_0485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BFO_0486 PF01783 Ribosomal L32p protein family BFO_0489 PF07971 Glycosyl hydrolase family 92 BFO_0489 PF17678 Glycosyl hydrolase family 92 N-terminal domain BFO_0490 PF00295 Glycosyl hydrolases family 28 BFO_0495 PF00593 TonB dependent receptor BFO_0495 PF07715 TonB-dependent Receptor Plug Domain BFO_0497 PF07676 WD40-like Beta Propeller Repeat BFO_0497 PF00326 Prolyl oligopeptidase family BFO_0499 PF07715 TonB-dependent Receptor Plug Domain BFO_0499 PF00593 TonB dependent receptor BFO_0507 PF00923 Transaldolase/Fructose-6-phosphate aldolase BFO_0508 PF01926 50S ribosome-binding GTPase BFO_0512 PF00579 tRNA synthetases class I (W and Y) BFO_0515 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BFO_0515 PF00056 lactate/malate dehydrogenase, NAD binding domain BFO_0517 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BFO_0517 PF02779 Transketolase, pyrimidine binding domain BFO_0517 PF02780 Transketolase, C-terminal domain BFO_0518 PF02080 TrkA-C domain BFO_0518 PF02254 TrkA-N domain BFO_0519 PF02386 Cation transport protein BFO_0521 PF07715 TonB-dependent Receptor Plug Domain BFO_0521 PF00593 TonB dependent receptor BFO_0531 PF01381 Helix-turn-helix BFO_0532 PF13657 HipA N-terminal domain BFO_0533 PF07804 HipA-like C-terminal domain BFO_0534 PF01926 50S ribosome-binding GTPase BFO_0534 PF12631 MnmE helical domain BFO_0534 PF10396 GTP-binding protein TrmE N-terminus BFO_0536 PF12344 Ultra-violet resistance protein B BFO_0536 PF17757 UvrB interaction domain BFO_0536 PF04851 Type III restriction enzyme, res subunit BFO_0536 PF00271 Helicase conserved C-terminal domain BFO_0539 PF03932 CutC family BFO_0540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BFO_0540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BFO_0540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BFO_0544 PF13439 Glycosyltransferase Family 4 BFO_0544 PF00534 Glycosyl transferases group 1 BFO_0545 PF13186 Iron-sulfur cluster-binding domain BFO_0545 PF04055 Radical SAM superfamily BFO_0548 PF04991 LicD family BFO_0550 PF03009 Glycerophosphoryl diester phosphodiesterase family BFO_0551 PF13807 G-rich domain on putative tyrosine kinase BFO_0551 PF13614 AAA domain BFO_0551 PF02706 Chain length determinant protein BFO_0553 PF00137 ATP synthase subunit C BFO_0556 PF02874 ATP synthase alpha/beta family, beta-barrel domain BFO_0556 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BFO_0557 PF02874 ATP synthase alpha/beta family, beta-barrel domain BFO_0557 PF16886 ATPsynthase alpha/beta subunit N-term extension BFO_0557 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BFO_0561 PF07730 Histidine kinase BFO_0561 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_0562 PF00196 Bacterial regulatory proteins, luxR family BFO_0562 PF00072 Response regulator receiver domain BFO_0580 PF01026 TatD related DNase BFO_0581 PF01809 Putative membrane protein insertion efficiency factor BFO_0582 PF00825 Ribonuclease P BFO_0585 PF02910 Fumarate reductase flavoprotein C-term BFO_0585 PF00890 FAD binding domain BFO_0588 PF07715 TonB-dependent Receptor Plug Domain BFO_0588 PF00593 TonB dependent receptor BFO_0593 PF01740 STAS domain BFO_0593 PF00916 Sulfate permease family BFO_0594 PF03462 PCRF domain BFO_0594 PF00472 RF-1 domain BFO_0602 PF00885 6,7-dimethyl-8-ribityllumazine synthase BFO_0604 PF02463 RecF/RecN/SMC N terminal domain BFO_0607 PF00595 PDZ domain BFO_0607 PF03572 Peptidase family S41 BFO_0609 PF01467 Cytidylyltransferase-like BFO_0610 PF00625 Guanylate kinase BFO_0611 PF03755 YicC-like family, N-terminal region BFO_0611 PF08340 Domain of unknown function (DUF1732) BFO_0623 PF03852 DNA mismatch endonuclease Vsr BFO_0628 PF08676 MutL C terminal dimerisation domain BFO_0628 PF01119 DNA mismatch repair protein, C-terminal domain BFO_0631 PF00145 C-5 cytosine-specific DNA methylase BFO_0634 PF02899 Phage integrase, N-terminal SAM-like domain BFO_0634 PF00589 Phage integrase family BFO_0635 PF00589 Phage integrase family BFO_0635 PF14659 Phage integrase, N-terminal SAM-like domain BFO_0642 PF00501 AMP-binding enzyme BFO_0643 PF04055 Radical SAM superfamily BFO_0643 PF01938 TRAM domain BFO_0643 PF00919 Uncharacterized protein family UPF0004 BFO_0645 PF00535 Glycosyl transferase family 2 BFO_0651 PF00950 ABC 3 transport family BFO_0652 PF02021 Uncharacterised protein family UPF0102 BFO_0656 PF00231 ATP synthase BFO_0657 PF00306 ATP synthase alpha/beta chain, C terminal domain BFO_0657 PF02874 ATP synthase alpha/beta family, beta-barrel domain BFO_0657 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BFO_0658 PF00213 ATP synthase delta (OSCP) subunit BFO_0659 PF00430 ATP synthase B/B' CF(0) BFO_0660 PF00137 ATP synthase subunit C BFO_0661 PF00119 ATP synthase A chain BFO_0663 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BFO_0664 PF02874 ATP synthase alpha/beta family, beta-barrel domain BFO_0664 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BFO_0667 PF00009 Elongation factor Tu GTP binding domain BFO_0667 PF16658 Class II release factor RF3, C-terminal domain BFO_0667 PF03144 Elongation factor Tu domain 2 BFO_0668 PF04321 RmlD substrate binding domain BFO_0670 PF00753 Metallo-beta-lactamase superfamily BFO_0671 PF05193 Peptidase M16 inactive domain BFO_0671 PF00675 Insulinase (Peptidase family M16) BFO_0673 PF03062 MBOAT, membrane-bound O-acyltransferase family BFO_0677 PF00012 Hsp70 protein BFO_0679 PF00589 Phage integrase family BFO_0679 PF02899 Phage integrase, N-terminal SAM-like domain BFO_0699 PF14310 Fibronectin type III-like domain BFO_0699 PF01915 Glycosyl hydrolase family 3 C-terminal domain BFO_0699 PF00933 Glycosyl hydrolase family 3 N terminal domain BFO_0703 PF00413 Matrixin BFO_0705 PF00488 MutS domain V BFO_0705 PF05190 MutS family domain IV BFO_0705 PF05192 MutS domain III BFO_0705 PF05188 MutS domain II BFO_0705 PF01624 MutS domain I BFO_0706 PF08450 SMP-30/Gluconolactonase/LRE-like region BFO_0707 PF00575 S1 RNA binding domain BFO_0707 PF08206 Ribonuclease B OB domain BFO_0707 PF17876 Cold shock domain BFO_0707 PF00773 RNB domain BFO_0709 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BFO_0709 PF01676 Metalloenzyme superfamily BFO_0712 PF00881 Nitroreductase family BFO_0712 PF01996 F420-0:Gamma-glutamyl ligase BFO_0716 PF00005 ABC transporter BFO_0717 PF01842 ACT domain BFO_0717 PF00696 Amino acid kinase family BFO_0718 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BFO_0718 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BFO_0722 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BFO_0722 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BFO_0723 PF00593 TonB dependent receptor BFO_0723 PF07715 TonB-dependent Receptor Plug Domain BFO_0725 PF16385 Domain of unknown function BFO_0725 PF00884 Sulfatase BFO_0731 PF00501 AMP-binding enzyme BFO_0731 PF14535 AMP-binding enzyme C-terminal domain BFO_0733 PF00221 Aromatic amino acid lyase BFO_0736 PF00593 TonB dependent receptor BFO_0736 PF07715 TonB-dependent Receptor Plug Domain BFO_0740 PF00521 DNA gyrase/topoisomerase IV, subunit A BFO_0742 PF03572 Peptidase family S41 BFO_0742 PF11818 C-terminal domain of tail specific protease (DUF3340) BFO_0742 PF17804 Tail specific protease N-terminal domain BFO_0742 PF00595 PDZ domain BFO_0744 PF13614 AAA domain BFO_0745 PF02195 ParB-like nuclease domain BFO_0745 PF17762 HTH domain found in ParB protein BFO_0747 PF01476 LysM domain BFO_0747 PF05257 CHAP domain BFO_0748 PF04607 Region found in RelA / SpoT proteins BFO_0748 PF13291 ACT domain BFO_0748 PF02824 TGS domain BFO_0752 PF01699 Sodium/calcium exchanger protein BFO_0754 PF01476 LysM domain BFO_0754 PF08525 Opacity-associated protein A N-terminal motif BFO_0754 PF01551 Peptidase family M23 BFO_0755 PF01411 tRNA synthetases class II (A) BFO_0755 PF02272 DHHA1 domain BFO_0755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BFO_0757 PF01761 3-dehydroquinate synthase BFO_0760 PF01790 Prolipoprotein diacylglyceryl transferase BFO_0762 PF00884 Sulfatase BFO_0762 PF16385 Domain of unknown function BFO_0765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BFO_0766 PF17391 Urocanase N-terminal domain BFO_0766 PF01175 Urocanase Rossmann-like domain BFO_0766 PF17392 Urocanase C-terminal domain BFO_0769 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) BFO_0770 PF07837 Formiminotransferase domain, N-terminal subdomain BFO_0770 PF02971 Formiminotransferase domain BFO_0771 PF01979 Amidohydrolase family BFO_0773 PF04961 Formiminotransferase-cyclodeaminase BFO_0774 PF00221 Aromatic amino acid lyase BFO_0778 PF13509 S1 domain BFO_0778 PF17783 CvfB-like winged helix domain BFO_0781 PF01569 PAP2 superfamily BFO_0783 PF00328 Histidine phosphatase superfamily (branch 2) BFO_0786 PF00005 ABC transporter BFO_0787 PF00209 Sodium:neurotransmitter symporter family BFO_0788 PF01263 Aldose 1-epimerase BFO_0790 PF02445 Quinolinate synthetase A protein BFO_0799 PF18255 DNA processing protein A sterile alpha motif domain BFO_0799 PF02481 DNA recombination-mediator protein A BFO_0800 PF00884 Sulfatase BFO_0802 PF00291 Pyridoxal-phosphate dependent enzyme BFO_0803 PF01641 SelR domain BFO_0803 PF08534 Redoxin BFO_0803 PF01625 Peptide methionine sulfoxide reductase BFO_0809 PF00873 AcrB/AcrD/AcrF family BFO_0810 PF00873 AcrB/AcrD/AcrF family BFO_0814 PF00005 ABC transporter BFO_0815 PF01238 Phosphomannose isomerase type I BFO_0816 PF02806 Alpha amylase, C-terminal all-beta domain BFO_0816 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BFO_0816 PF00128 Alpha amylase, catalytic domain BFO_0819 PF08502 LeuA allosteric (dimerisation) domain BFO_0819 PF00682 HMGL-like BFO_0820 PF00330 Aconitase family (aconitate hydratase) BFO_0822 PF00694 Aconitase C-terminal domain BFO_0823 PF08502 LeuA allosteric (dimerisation) domain BFO_0823 PF00682 HMGL-like BFO_0824 PF00180 Isocitrate/isopropylmalate dehydrogenase BFO_0828 PF08032 RNA 2'-O ribose methyltransferase substrate binding BFO_0828 PF00588 SpoU rRNA Methylase family BFO_0831 PF01609 Transposase DDE domain BFO_0837 PF00999 Sodium/hydrogen exchanger family BFO_0838 PF02965 Vitamin B12 dependent methionine synthase, activation domain BFO_0838 PF02607 B12 binding domain BFO_0838 PF02574 Homocysteine S-methyltransferase BFO_0838 PF02310 B12 binding domain BFO_0838 PF00809 Pterin binding enzyme BFO_0839 PF01136 Peptidase family U32 BFO_0839 PF12392 Collagenase BFO_0840 PF04204 Homoserine O-succinyltransferase BFO_0841 PF02464 Competence-damaged protein BFO_0841 PF18146 Damage-inducible protein CinA KH domain BFO_0841 PF00994 Probable molybdopterin binding domain BFO_0842 PF00814 Glycoprotease family BFO_0845 PF01613 Flavin reductase like domain BFO_0846 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BFO_0846 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BFO_0847 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BFO_0847 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BFO_0848 PF01694 Rhomboid family BFO_0853 PF13186 Iron-sulfur cluster-binding domain BFO_0853 PF04055 Radical SAM superfamily BFO_0860 PF00005 ABC transporter BFO_0860 PF00664 ABC transporter transmembrane region BFO_0860 PF03412 Peptidase C39 family BFO_0877 PF04542 Sigma-70 region 2 BFO_0877 PF04545 Sigma-70, region 4 BFO_0894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_0894 PF00512 His Kinase A (phospho-acceptor) domain BFO_0895 PF00072 Response regulator receiver domain BFO_0895 PF00486 Transcriptional regulatory protein, C terminal BFO_0902 PF02654 Cobalamin-5-phosphate synthase BFO_0903 PF02277 Phosphoribosyltransferase BFO_0907 PF02146 Sir2 family BFO_0908 PF13173 AAA domain BFO_0908 PF13635 Domain of unknown function (DUF4143) BFO_0914 PF01040 UbiA prenyltransferase family BFO_0919 PF04542 Sigma-70 region 2 BFO_0919 PF08281 Sigma-70, region 4 BFO_0922 PF02954 Bacterial regulatory protein, Fis family BFO_0922 PF00072 Response regulator receiver domain BFO_0922 PF00158 Sigma-54 interaction domain BFO_0923 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BFO_0924 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BFO_0925 PF09334 tRNA synthetases class I (M) BFO_0925 PF01588 Putative tRNA binding domain BFO_0925 PF08264 Anticodon-binding domain of tRNA BFO_0926 PF00270 DEAD/DEAH box helicase BFO_0926 PF00271 Helicase conserved C-terminal domain BFO_0934 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BFO_0936 PF01293 Phosphoenolpyruvate carboxykinase BFO_0938 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BFO_0938 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BFO_0939 PF07670 Nucleoside recognition BFO_0941 PF02130 Uncharacterized protein family UPF0054 BFO_0942 PF08264 Anticodon-binding domain of tRNA BFO_0942 PF00133 tRNA synthetases class I (I, L, M and V) BFO_0942 PF13603 Leucyl-tRNA synthetase, Domain 2 BFO_0943 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BFO_0943 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BFO_0944 PF01725 Ham1 family BFO_0947 PF00501 AMP-binding enzyme BFO_0948 PF01810 LysE type translocator BFO_0949 PF02401 LytB protein BFO_0951 PF02224 Cytidylate kinase BFO_0955 PF01026 TatD related DNase BFO_0957 PF01618 MotA/TolQ/ExbB proton channel family BFO_0961 PF13404 AsnC-type helix-turn-helix domain BFO_0961 PF01037 Lrp/AsnC ligand binding domain BFO_0962 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BFO_0963 PF00364 Biotin-requiring enzyme BFO_0965 PF01039 Carboxyl transferase domain BFO_0967 PF00696 Amino acid kinase family BFO_0970 PF07715 TonB-dependent Receptor Plug Domain BFO_0970 PF00593 TonB dependent receptor BFO_0971 PF07980 SusD family BFO_0971 PF14322 Starch-binding associating with outer membrane BFO_0973 PF01238 Phosphomannose isomerase type I BFO_0974 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BFO_0974 PF02806 Alpha amylase, C-terminal all-beta domain BFO_0974 PF00128 Alpha amylase, catalytic domain BFO_0989 PF12320 Type 5 capsule protein repressor C-terminal domain BFO_0989 PF00149 Calcineurin-like phosphoesterase BFO_0991 PF00480 ROK family BFO_0996 PF00186 Dihydrofolate reductase BFO_0997 PF00303 Thymidylate synthase BFO_0999 PF00860 Permease family BFO_1001 PF01367 5'-3' exonuclease, C-terminal SAM fold BFO_1001 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BFO_1001 PF00476 DNA polymerase family A BFO_1001 PF01612 3'-5' exonuclease BFO_1002 PF00348 Polyprenyl synthetase BFO_1006 PF01522 Polysaccharide deacetylase BFO_1007 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BFO_1007 PF00326 Prolyl oligopeptidase family BFO_1008 PF02926 THUMP domain BFO_1008 PF01170 Putative RNA methylase family UPF0020 BFO_1011 PF00877 NlpC/P60 family BFO_1011 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BFO_1012 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BFO_1012 PF13378 Enolase C-terminal domain-like BFO_1015 PF04055 Radical SAM superfamily BFO_1015 PF01926 50S ribosome-binding GTPase BFO_1015 PF01018 GTP1/OBG BFO_1024 PF00593 TonB dependent receptor BFO_1024 PF07715 TonB-dependent Receptor Plug Domain BFO_1032 PF01230 HIT domain BFO_1033 PF03449 Transcription elongation factor, N-terminal BFO_1033 PF01272 Transcription elongation factor, GreA/GreB, C-term BFO_1035 PF01380 SIS domain BFO_1035 PF00571 CBS domain BFO_1036 PF00294 pfkB family carbohydrate kinase BFO_1037 PF17755 UvrA DNA-binding domain BFO_1037 PF17760 UvrA interaction domain BFO_1038 PF07687 Peptidase dimerisation domain BFO_1038 PF01546 Peptidase family M20/M25/M40 BFO_1040 PF01138 3' exoribonuclease family, domain 1 BFO_1040 PF03725 3' exoribonuclease family, domain 2 BFO_1040 PF00575 S1 RNA binding domain BFO_1040 PF00013 KH domain BFO_1040 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BFO_1042 PF00535 Glycosyl transferase family 2 BFO_1043 PF13439 Glycosyltransferase Family 4 BFO_1043 PF00534 Glycosyl transferases group 1 BFO_1048 PF12464 Maltose acetyltransferase BFO_1048 PF14602 Hexapeptide repeat of succinyl-transferase BFO_1048 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_1050 PF02350 UDP-N-acetylglucosamine 2-epimerase BFO_1051 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BFO_1051 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BFO_1051 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BFO_1052 PF02661 Fic/DOC family BFO_1052 PF13784 Fic/DOC family N-terminal BFO_1055 PF17191 RecG wedge domain BFO_1055 PF00270 DEAD/DEAH box helicase BFO_1055 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BFO_1056 PF13537 Glutamine amidotransferase domain BFO_1056 PF00733 Asparagine synthase BFO_1063 PF02348 Cytidylyltransferase BFO_1064 PF00483 Nucleotidyl transferase BFO_1065 PF02350 UDP-N-acetylglucosamine 2-epimerase BFO_1066 PF03102 NeuB family BFO_1066 PF08666 SAF domain BFO_1070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BFO_1070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BFO_1073 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BFO_1074 PF01370 NAD dependent epimerase/dehydratase family BFO_1075 PF01943 Polysaccharide biosynthesis protein BFO_1077 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BFO_1077 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BFO_1080 PF01471 Putative peptidoglycan binding domain BFO_1080 PF03572 Peptidase family S41 BFO_1080 PF17820 PDZ domain BFO_1081 PF01467 Cytidylyltransferase-like BFO_1082 PF00986 DNA gyrase B subunit, carboxyl terminus BFO_1082 PF00204 DNA gyrase B BFO_1082 PF01751 Toprim domain BFO_1082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_1089 PF00551 Formyl transferase BFO_1090 PF00550 Phosphopantetheine attachment site BFO_1091 PF00109 Beta-ketoacyl synthase, N-terminal domain BFO_1091 PF02801 Beta-ketoacyl synthase, C-terminal domain BFO_1092 PF00035 Double-stranded RNA binding motif BFO_1092 PF14622 Ribonuclease-III-like BFO_1095 PF00365 Phosphofructokinase BFO_1096 PF02872 5'-nucleotidase, C-terminal domain BFO_1096 PF00149 Calcineurin-like phosphoesterase BFO_1097 PF00593 TonB dependent receptor BFO_1099 PF13932 GidA associated domain BFO_1099 PF01134 Glucose inhibited division protein A BFO_1100 PF08459 UvrC Helix-hairpin-helix N-terminal BFO_1100 PF01541 GIY-YIG catalytic domain BFO_1101 PF02580 D-Tyr-tRNA(Tyr) deacylase BFO_1103 PF00413 Matrixin BFO_1109 PF12706 Beta-lactamase superfamily domain BFO_1109 PF00753 Metallo-beta-lactamase superfamily BFO_1112 PF04552 Sigma-54, DNA binding domain BFO_1112 PF04963 Sigma-54 factor, core binding domain BFO_1112 PF00309 Sigma-54 factor, Activator interacting domain (AID) BFO_1113 PF01597 Glycine cleavage H-protein BFO_1114 PF00731 AIR carboxylase BFO_1115 PF04551 GcpE protein BFO_1121 PF02075 Crossover junction endodeoxyribonuclease RuvC BFO_1122 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BFO_1122 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BFO_1125 PF00072 Response regulator receiver domain BFO_1125 PF00158 Sigma-54 interaction domain BFO_1125 PF02954 Bacterial regulatory protein, Fis family BFO_1130 PF05221 S-adenosyl-L-homocysteine hydrolase BFO_1130 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BFO_1132 PF00109 Beta-ketoacyl synthase, N-terminal domain BFO_1132 PF02801 Beta-ketoacyl synthase, C-terminal domain BFO_1134 PF00892 EamA-like transporter family BFO_1137 PF01207 Dihydrouridine synthase (Dus) BFO_1138 PF02774 Semialdehyde dehydrogenase, dimerisation domain BFO_1138 PF01118 Semialdehyde dehydrogenase, NAD binding domain BFO_1150 PF00581 Rhodanese-like domain BFO_1151 PF00884 Sulfatase BFO_1154 PF01791 DeoC/LacD family aldolase BFO_1155 PF02690 Na+/Pi-cotransporter BFO_1156 PF02614 Glucuronate isomerase BFO_1157 PF00365 Phosphofructokinase BFO_1166 PF07726 ATPase family associated with various cellular activities (AAA) BFO_1166 PF17863 AAA lid domain BFO_1168 PF00413 Matrixin BFO_1174 PF00413 Matrixin BFO_1179 PF00413 Matrixin BFO_1183 PF01914 MarC family integral membrane protein BFO_1185 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BFO_1185 PF02843 Phosphoribosylglycinamide synthetase, C domain BFO_1185 PF02844 Phosphoribosylglycinamide synthetase, N domain BFO_1191 PF07715 TonB-dependent Receptor Plug Domain BFO_1191 PF00593 TonB dependent receptor BFO_1192 PF07980 SusD family BFO_1192 PF14322 Starch-binding associating with outer membrane BFO_1198 PF00593 TonB dependent receptor BFO_1198 PF07715 TonB-dependent Receptor Plug Domain BFO_1208 PF00072 Response regulator receiver domain BFO_1208 PF00196 Bacterial regulatory proteins, luxR family BFO_1211 PF03781 Sulfatase-modifying factor enzyme 1 BFO_1215 PF03129 Anticodon binding domain BFO_1218 PF05681 Fumarate hydratase (Fumerase) BFO_1218 PF05683 Fumarase C-terminus BFO_1220 PF00072 Response regulator receiver domain BFO_1220 PF00486 Transcriptional regulatory protein, C terminal BFO_1221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_1221 PF00512 His Kinase A (phospho-acceptor) domain BFO_1222 PF02899 Phage integrase, N-terminal SAM-like domain BFO_1222 PF00589 Phage integrase family BFO_1230 PF01751 Toprim domain BFO_1230 PF01131 DNA topoisomerase BFO_1235 PF03764 Elongation factor G, domain IV BFO_1235 PF00679 Elongation factor G C-terminus BFO_1235 PF14492 Elongation Factor G, domain II BFO_1235 PF00009 Elongation factor Tu GTP binding domain BFO_1236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_1236 PF00512 His Kinase A (phospho-acceptor) domain BFO_1236 PF00497 Bacterial extracellular solute-binding proteins, family 3 BFO_1236 PF00072 Response regulator receiver domain BFO_1236 PF01627 Hpt domain BFO_1237 PF00158 Sigma-54 interaction domain BFO_1237 PF00072 Response regulator receiver domain BFO_1237 PF02954 Bacterial regulatory protein, Fis family BFO_1287 PF00664 ABC transporter transmembrane region BFO_1287 PF00005 ABC transporter BFO_1287 PF03412 Peptidase C39 family BFO_1298 PF07715 TonB-dependent Receptor Plug Domain BFO_1298 PF00593 TonB dependent receptor BFO_1302 PF01389 OmpA-like transmembrane domain BFO_1302 PF00691 OmpA family BFO_1303 PF02547 Queuosine biosynthesis protein BFO_1304 PF00512 His Kinase A (phospho-acceptor) domain BFO_1304 PF00072 Response regulator receiver domain BFO_1304 PF08448 PAS fold BFO_1304 PF13426 PAS domain BFO_1304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_1307 PF09190 DALR domain BFO_1307 PF01406 tRNA synthetases class I (C) catalytic domain BFO_1309 PF00550 Phosphopantetheine attachment site BFO_1314 PF02801 Beta-ketoacyl synthase, C-terminal domain BFO_1314 PF00109 Beta-ketoacyl synthase, N-terminal domain BFO_1316 PF00550 Phosphopantetheine attachment site BFO_1320 PF01923 Cobalamin adenosyltransferase BFO_1323 PF03781 Sulfatase-modifying factor enzyme 1 BFO_1329 PF10502 Signal peptidase, peptidase S26 BFO_1330 PF01113 Dihydrodipicolinate reductase, N-terminus BFO_1330 PF05173 Dihydrodipicolinate reductase, C-terminus BFO_1338 PF00255 Glutathione peroxidase BFO_1339 PF01765 Ribosome recycling factor BFO_1340 PF16745 RsgA N-terminal domain BFO_1340 PF03193 RsgA GTPase BFO_1341 PF13286 Phosphohydrolase-associated domain BFO_1341 PF01966 HD domain BFO_1345 PF00871 Acetokinase family BFO_1346 PF01515 Phosphate acetyl/butaryl transferase BFO_1347 PF02457 DisA bacterial checkpoint controller nucleotide-binding BFO_1348 PF00809 Pterin binding enzyme BFO_1349 PF01225 Mur ligase family, catalytic domain BFO_1349 PF08245 Mur ligase middle domain BFO_1349 PF02875 Mur ligase family, glutamate ligase domain BFO_1352 PF01136 Peptidase family U32 BFO_1363 PF00171 Aldehyde dehydrogenase family BFO_1364 PF01048 Phosphorylase superfamily BFO_1368 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_1368 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BFO_1369 PF07977 FabA-like domain BFO_1369 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BFO_1370 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_1370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BFO_1372 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BFO_1373 PF00472 RF-1 domain BFO_1373 PF03462 PCRF domain BFO_1374 PF00586 AIR synthase related protein, N-terminal domain BFO_1374 PF02769 AIR synthase related protein, C-terminal domain BFO_1380 PF03819 MazG nucleotide pyrophosphohydrolase domain BFO_1381 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BFO_1381 PF00703 Glycosyl hydrolases family 2 BFO_1381 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BFO_1381 PF16355 Domain of unknown function (DUF4982) BFO_1381 PF02837 Glycosyl hydrolases family 2, sugar binding domain BFO_1389 PF02899 Phage integrase, N-terminal SAM-like domain BFO_1389 PF00589 Phage integrase family BFO_1391 PF00398 Ribosomal RNA adenine dimethylase BFO_1392 PF01544 CorA-like Mg2+ transporter protein BFO_1393 PF13335 Magnesium chelatase, subunit ChlI C-terminal BFO_1393 PF01078 Magnesium chelatase, subunit ChlI BFO_1395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BFO_1399 PF07715 TonB-dependent Receptor Plug Domain BFO_1399 PF00593 TonB dependent receptor BFO_1401 PF00535 Glycosyl transferase family 2 BFO_1407 PF07715 TonB-dependent Receptor Plug Domain BFO_1407 PF00593 TonB dependent receptor BFO_1412 PF00593 TonB dependent receptor BFO_1412 PF07715 TonB-dependent Receptor Plug Domain BFO_1414 PF06071 Protein of unknown function (DUF933) BFO_1414 PF01926 50S ribosome-binding GTPase BFO_1426 PF03412 Peptidase C39 family BFO_1426 PF00664 ABC transporter transmembrane region BFO_1426 PF00005 ABC transporter BFO_1428 PF00149 Calcineurin-like phosphoesterase BFO_1429 PF01883 Iron-sulfur cluster assembly protein BFO_1430 PF04002 RadC-like JAB domain BFO_1431 PF09285 Elongation factor P, C-terminal BFO_1431 PF01132 Elongation factor P (EF-P) OB domain BFO_1431 PF08207 Elongation factor P (EF-P) KOW-like domain BFO_1436 PF00166 Chaperonin 10 Kd subunit BFO_1437 PF00118 TCP-1/cpn60 chaperonin family BFO_1438 PF00156 Phosphoribosyl transferase domain BFO_1440 PF05175 Methyltransferase small domain BFO_1440 PF17827 PrmC N-terminal domain BFO_1441 PF01872 RibD C-terminal domain BFO_1441 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BFO_1444 PF01255 Putative undecaprenyl diphosphate synthase BFO_1448 PF01177 Asp/Glu/Hydantoin racemase BFO_1451 PF00005 ABC transporter BFO_1452 PF12704 MacB-like periplasmic core domain BFO_1452 PF02687 FtsX-like permease family BFO_1453 PF02033 Ribosome-binding factor A BFO_1456 PF00593 TonB dependent receptor BFO_1456 PF07715 TonB-dependent Receptor Plug Domain BFO_1459 PF01596 O-methyltransferase BFO_1460 PF00224 Pyruvate kinase, barrel domain BFO_1460 PF02887 Pyruvate kinase, alpha/beta domain BFO_1461 PF01220 Dehydroquinase class II BFO_1467 PF13185 GAF domain BFO_1468 PF13291 ACT domain BFO_1468 PF04607 Region found in RelA / SpoT proteins BFO_1468 PF02824 TGS domain BFO_1469 PF13735 tRNA nucleotidyltransferase domain 2 putative BFO_1469 PF12627 Probable RNA and SrmB- binding site of polymerase A BFO_1469 PF01743 Poly A polymerase head domain BFO_1470 PF13419 Haloacid dehalogenase-like hydrolase BFO_1474 PF13734 Spi protease inhibitor BFO_1474 PF01640 Peptidase C10 family BFO_1484 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BFO_1484 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BFO_1486 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BFO_1486 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BFO_1487 PF00465 Iron-containing alcohol dehydrogenase BFO_1488 PF00171 Aldehyde dehydrogenase family BFO_1489 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BFO_1489 PF02770 Acyl-CoA dehydrogenase, middle domain BFO_1489 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BFO_1490 PF01012 Electron transfer flavoprotein domain BFO_1491 PF00766 Electron transfer flavoprotein FAD-binding domain BFO_1491 PF01012 Electron transfer flavoprotein domain BFO_1493 PF12399 Branched-chain amino acid ATP-binding cassette transporter BFO_1493 PF00005 ABC transporter BFO_1494 PF08676 MutL C terminal dimerisation domain BFO_1494 PF01119 DNA mismatch repair protein, C-terminal domain BFO_1497 PF00639 PPIC-type PPIASE domain BFO_1497 PF09312 SurA N-terminal domain BFO_1499 PF09312 SurA N-terminal domain BFO_1499 PF00639 PPIC-type PPIASE domain BFO_1500 PF00270 DEAD/DEAH box helicase BFO_1500 PF16124 RecQ zinc-binding BFO_1500 PF00570 HRDC domain BFO_1500 PF09382 RQC domain BFO_1500 PF00271 Helicase conserved C-terminal domain BFO_1501 PF10431 C-terminal, D2-small domain, of ClpB protein BFO_1501 PF06689 ClpX C4-type zinc finger BFO_1501 PF07724 AAA domain (Cdc48 subfamily) BFO_1502 PF00574 Clp protease BFO_1503 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BFO_1503 PF05697 Bacterial trigger factor protein (TF) BFO_1503 PF05698 Bacterial trigger factor protein (TF) C-terminus BFO_1509 PF04542 Sigma-70 region 2 BFO_1509 PF08281 Sigma-70, region 4 BFO_1510 PF07715 TonB-dependent Receptor Plug Domain BFO_1510 PF00593 TonB dependent receptor BFO_1511 PF17191 RecG wedge domain BFO_1511 PF00270 DEAD/DEAH box helicase BFO_1511 PF00271 Helicase conserved C-terminal domain BFO_1515 PF00692 dUTPase BFO_1519 PF00593 TonB dependent receptor BFO_1519 PF07715 TonB-dependent Receptor Plug Domain BFO_1521 PF12804 MobA-like NTP transferase domain BFO_1523 PF03668 P-loop ATPase protein family BFO_1526 PF00709 Adenylosuccinate synthetase BFO_1528 PF03129 Anticodon binding domain BFO_1528 PF13393 Histidyl-tRNA synthetase BFO_1529 PF00082 Subtilase family BFO_1529 PF05922 Peptidase inhibitor I9 BFO_1535 PF01751 Toprim domain BFO_1535 PF01131 DNA topoisomerase BFO_1536 PF04542 Sigma-70 region 2 BFO_1536 PF08281 Sigma-70, region 4 BFO_1537 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BFO_1537 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BFO_1539 PF02773 S-adenosylmethionine synthetase, C-terminal domain BFO_1539 PF00438 S-adenosylmethionine synthetase, N-terminal domain BFO_1539 PF02772 S-adenosylmethionine synthetase, central domain BFO_1541 PF00164 Ribosomal protein S12/S23 BFO_1542 PF00177 Ribosomal protein S7p/S5e BFO_1543 PF00679 Elongation factor G C-terminus BFO_1543 PF14492 Elongation Factor G, domain II BFO_1543 PF03144 Elongation factor Tu domain 2 BFO_1543 PF00009 Elongation factor Tu GTP binding domain BFO_1543 PF03764 Elongation factor G, domain IV BFO_1544 PF00338 Ribosomal protein S10p/S20e BFO_1545 PF00297 Ribosomal protein L3 BFO_1546 PF00573 Ribosomal protein L4/L1 family BFO_1547 PF00276 Ribosomal protein L23 BFO_1548 PF00181 Ribosomal Proteins L2, RNA binding domain BFO_1548 PF03947 Ribosomal Proteins L2, C-terminal domain BFO_1550 PF00203 Ribosomal protein S19 BFO_1551 PF00237 Ribosomal protein L22p/L17e BFO_1552 PF00189 Ribosomal protein S3, C-terminal domain BFO_1552 PF07650 KH domain BFO_1553 PF00252 Ribosomal protein L16p/L10e BFO_1554 PF00831 Ribosomal L29 protein BFO_1555 PF00366 Ribosomal protein S17 BFO_1556 PF00238 Ribosomal protein L14p/L23e BFO_1557 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BFO_1557 PF00467 KOW motif BFO_1558 PF00281 Ribosomal protein L5 BFO_1558 PF00673 ribosomal L5P family C-terminus BFO_1559 PF00253 Ribosomal protein S14p/S29e BFO_1560 PF00410 Ribosomal protein S8 BFO_1561 PF00347 Ribosomal protein L6 BFO_1562 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BFO_1563 PF03719 Ribosomal protein S5, C-terminal domain BFO_1563 PF00333 Ribosomal protein S5, N-terminal domain BFO_1564 PF00327 Ribosomal protein L30p/L7e BFO_1565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BFO_1566 PF00344 SecY translocase BFO_1567 PF00557 Metallopeptidase family M24 BFO_1568 PF01176 Translation initiation factor 1A / IF-1 BFO_1569 PF00444 Ribosomal protein L36 BFO_1570 PF00416 Ribosomal protein S13/S18 BFO_1571 PF00411 Ribosomal protein S11 BFO_1572 PF00163 Ribosomal protein S4/S9 N-terminal domain BFO_1572 PF01479 S4 domain BFO_1573 PF01000 RNA polymerase Rpb3/RpoA insert domain BFO_1573 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BFO_1573 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BFO_1574 PF01196 Ribosomal protein L17 BFO_1575 PF00005 ABC transporter BFO_1576 PF02405 Permease MlaE BFO_1580 PF04055 Radical SAM superfamily BFO_1580 PF06969 HemN C-terminal domain BFO_1581 PF00009 Elongation factor Tu GTP binding domain BFO_1581 PF00679 Elongation factor G C-terminus BFO_1581 PF14492 Elongation Factor G, domain II BFO_1581 PF03764 Elongation factor G, domain IV BFO_1581 PF03144 Elongation factor Tu domain 2 BFO_1591 PF01734 Patatin-like phospholipase BFO_1592 PF00128 Alpha amylase, catalytic domain BFO_1593 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BFO_1593 PF14572 Phosphoribosyl synthetase-associated domain BFO_1598 PF07715 TonB-dependent Receptor Plug Domain BFO_1598 PF00593 TonB dependent receptor BFO_1603 PF03577 Peptidase family C69 BFO_1612 PF02535 ZIP Zinc transporter BFO_1614 PF01209 ubiE/COQ5 methyltransferase family BFO_1615 PF08241 Methyltransferase domain BFO_1616 PF01209 ubiE/COQ5 methyltransferase family BFO_1618 PF08241 Methyltransferase domain BFO_1622 PF00664 ABC transporter transmembrane region BFO_1622 PF00005 ABC transporter BFO_1624 PF00664 ABC transporter transmembrane region BFO_1624 PF00005 ABC transporter BFO_1625 PF04960 Glutaminase BFO_1627 PF01545 Cation efflux family BFO_1629 PF01687 Riboflavin kinase BFO_1629 PF06574 FAD synthetase BFO_1634 PF02368 Bacterial Ig-like domain (group 2) BFO_1635 PF04055 Radical SAM superfamily BFO_1635 PF13186 Iron-sulfur cluster-binding domain BFO_1637 PF02910 Fumarate reductase flavoprotein C-term BFO_1637 PF00890 FAD binding domain BFO_1640 PF03485 Arginyl tRNA synthetase N terminal domain BFO_1640 PF05746 DALR anticodon binding domain BFO_1640 PF00750 tRNA synthetases class I (R) BFO_1641 PF01131 DNA topoisomerase BFO_1641 PF01751 Toprim domain BFO_1641 PF13368 Topoisomerase C-terminal repeat BFO_1643 PF00133 tRNA synthetases class I (I, L, M and V) BFO_1643 PF08264 Anticodon-binding domain of tRNA BFO_1643 PF10458 Valyl tRNA synthetase tRNA binding arm BFO_1658 PF04055 Radical SAM superfamily BFO_1658 PF16199 Radical_SAM C-terminal domain BFO_1659 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BFO_1659 PF00326 Prolyl oligopeptidase family BFO_1660 PF04055 Radical SAM superfamily BFO_1666 PF00925 GTP cyclohydrolase II BFO_1666 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BFO_1670 PF17384 RimP C-terminal SH3 domain BFO_1670 PF02576 RimP N-terminal domain BFO_1671 PF13184 NusA-like KH domain BFO_1671 PF08529 NusA N-terminal domain BFO_1672 PF00009 Elongation factor Tu GTP binding domain BFO_1672 PF11987 Translation-initiation factor 2 BFO_1672 PF04760 Translation initiation factor IF-2, N-terminal region BFO_1674 PF01458 Uncharacterized protein family (UPF0051) BFO_1675 PF00005 ABC transporter BFO_1676 PF01458 Uncharacterized protein family (UPF0051) BFO_1678 PF01594 AI-2E family transporter BFO_1680 PF18152 DAHP synthase ferredoxin-like domain BFO_1680 PF00793 DAHP synthetase I family BFO_1681 PF00155 Aminotransferase class I and II BFO_1682 PF00800 Prephenate dehydratase BFO_1682 PF01842 ACT domain BFO_1682 PF01817 Chorismate mutase type II BFO_1683 PF00106 short chain dehydrogenase BFO_1687 PF00266 Aminotransferase class-V BFO_1690 PF01906 Putative heavy-metal-binding BFO_1691 PF01351 Ribonuclease HII BFO_1692 PF02657 Fe-S metabolism associated domain BFO_1694 PF07722 Peptidase C26 BFO_1695 PF01751 Toprim domain BFO_1695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_1695 PF00986 DNA gyrase B subunit, carboxyl terminus BFO_1695 PF00204 DNA gyrase B BFO_1697 PF03412 Peptidase C39 family BFO_1697 PF00005 ABC transporter BFO_1697 PF00664 ABC transporter transmembrane region BFO_1712 PF01649 Ribosomal protein S20 BFO_1715 PF07715 TonB-dependent Receptor Plug Domain BFO_1715 PF00593 TonB dependent receptor BFO_1718 PF00593 TonB dependent receptor BFO_1718 PF07715 TonB-dependent Receptor Plug Domain BFO_1720 PF00578 AhpC/TSA family BFO_1722 PF00085 Thioredoxin BFO_1723 PF01336 OB-fold nucleic acid binding domain BFO_1723 PF02811 PHP domain BFO_1723 PF14579 Helix-hairpin-helix motif BFO_1723 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BFO_1723 PF07733 Bacterial DNA polymerase III alpha NTPase domain BFO_1726 PF02142 MGS-like domain BFO_1728 PF00886 Ribosomal protein S16 BFO_1729 PF00085 Thioredoxin BFO_1731 PF00270 DEAD/DEAH box helicase BFO_1731 PF00271 Helicase conserved C-terminal domain BFO_1731 PF16124 RecQ zinc-binding BFO_1731 PF00570 HRDC domain BFO_1731 PF09382 RQC domain BFO_1733 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BFO_1733 PF17768 RecJ OB domain BFO_1733 PF02272 DHHA1 domain BFO_1733 PF01368 DHH family BFO_1736 PF00551 Formyl transferase BFO_1736 PF02911 Formyl transferase, C-terminal domain BFO_1739 PF00183 Hsp90 protein BFO_1740 PF17871 AAA lid domain BFO_1740 PF07724 AAA domain (Cdc48 subfamily) BFO_1740 PF00004 ATPase family associated with various cellular activities (AAA) BFO_1740 PF10431 C-terminal, D2-small domain, of ClpB protein BFO_1740 PF02861 Clp amino terminal domain, pathogenicity island component BFO_1741 PF03471 Transporter associated domain BFO_1741 PF00571 CBS domain BFO_1741 PF01595 Cyclin M transmembrane N-terminal domain BFO_1742 PF03315 Serine dehydratase beta chain BFO_1742 PF03313 Serine dehydratase alpha chain BFO_1743 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BFO_1743 PF01409 tRNA synthetases class II core domain (F) BFO_1744 PF00633 Helix-hairpin-helix motif BFO_1744 PF00730 HhH-GPD superfamily base excision DNA repair protein BFO_1744 PF10576 Iron-sulfur binding domain of endonuclease III BFO_1745 PF05193 Peptidase M16 inactive domain BFO_1745 PF00675 Insulinase (Peptidase family M16) BFO_1750 PF00480 ROK family BFO_1750 PF01325 Iron dependent repressor, N-terminal DNA binding domain BFO_1753 PF00085 Thioredoxin BFO_1755 PF07992 Pyridine nucleotide-disulphide oxidoreductase BFO_1755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BFO_1757 PF00082 Subtilase family BFO_1759 PF01202 Shikimate kinase BFO_1760 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BFO_1760 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BFO_1760 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BFO_1761 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BFO_1762 PF18075 FtsX extracellular domain BFO_1764 PF02673 Bacitracin resistance protein BacA BFO_1765 PF16198 tRNA pseudouridylate synthase B C-terminal domain BFO_1765 PF01509 TruB family pseudouridylate synthase (N terminal domain) BFO_1766 PF02547 Queuosine biosynthesis protein BFO_1767 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BFO_1769 PF07660 Secretin and TonB N terminus short domain BFO_1769 PF07715 TonB-dependent Receptor Plug Domain BFO_1769 PF00593 TonB dependent receptor BFO_1772 PF07690 Major Facilitator Superfamily BFO_1777 PF00155 Aminotransferase class I and II BFO_1778 PF08281 Sigma-70, region 4 BFO_1778 PF04542 Sigma-70 region 2 BFO_1780 PF00575 S1 RNA binding domain BFO_1783 PF03063 Prismane/CO dehydrogenase family BFO_1786 PF00312 Ribosomal protein S15 BFO_1792 PF01654 Cytochrome bd terminal oxidase subunit I BFO_1794 PF04542 Sigma-70 region 2 BFO_1794 PF08281 Sigma-70, region 4 BFO_1796 PF00593 TonB dependent receptor BFO_1796 PF07715 TonB-dependent Receptor Plug Domain BFO_1798 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BFO_1798 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BFO_1801 PF05193 Peptidase M16 inactive domain BFO_1801 PF00675 Insulinase (Peptidase family M16) BFO_1802 PF00654 Voltage gated chloride channel BFO_1803 PF02397 Bacterial sugar transferase BFO_1807 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BFO_1809 PF00753 Metallo-beta-lactamase superfamily BFO_1809 PF00258 Flavodoxin BFO_1810 PF01790 Prolipoprotein diacylglyceryl transferase BFO_1811 PF01118 Semialdehyde dehydrogenase, NAD binding domain BFO_1811 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain BFO_1812 PF00202 Aminotransferase class-III BFO_1813 PF01118 Semialdehyde dehydrogenase, NAD binding domain BFO_1813 PF02774 Semialdehyde dehydrogenase, dimerisation domain BFO_1814 PF00764 Arginosuccinate synthase BFO_1816 PF01316 Arginine repressor, DNA binding domain BFO_1816 PF02863 Arginine repressor, C-terminal domain BFO_1819 PF03825 Nucleoside H+ symporter BFO_1823 PF02310 B12 binding domain BFO_1823 PF04055 Radical SAM superfamily BFO_1826 PF00005 ABC transporter BFO_1829 PF02684 Lipid-A-disaccharide synthetase BFO_1830 PF01975 Survival protein SurE BFO_1832 PF13091 PLD-like domain BFO_1832 PF13396 Phospholipase_D-nuclease N-terminal BFO_1838 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BFO_1840 PF13419 Haloacid dehalogenase-like hydrolase BFO_1843 PF03186 CobD/Cbib protein BFO_1844 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BFO_1844 PF07685 CobB/CobQ-like glutamine amidotransferase domain BFO_1845 PF00155 Aminotransferase class I and II BFO_1846 PF01042 Endoribonuclease L-PSP BFO_1848 PF02542 YgbB family BFO_1849 PF12002 MgsA AAA+ ATPase C terminal BFO_1849 PF00004 ATPase family associated with various cellular activities (AAA) BFO_1849 PF16193 AAA C-terminal domain BFO_1853 PF03527 RHS protein BFO_1856 PF03527 RHS protein BFO_1858 PF03527 RHS protein BFO_1860 PF03527 RHS protein BFO_1862 PF03527 RHS protein BFO_1871 PF14437 MafB19-like deaminase BFO_1874 PF01746 tRNA (Guanine-1)-methyltransferase BFO_1876 PF03147 Ferredoxin-fold anticodon binding domain BFO_1876 PF03484 tRNA synthetase B5 domain BFO_1876 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BFO_1876 PF03483 B3/4 domain BFO_1876 PF01588 Putative tRNA binding domain BFO_1877 PF01709 Transcriptional regulator BFO_1879 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BFO_1880 PF08032 RNA 2'-O ribose methyltransferase substrate binding BFO_1880 PF00588 SpoU rRNA Methylase family BFO_1882 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BFO_1882 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BFO_1882 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BFO_1882 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BFO_1883 PF00829 Ribosomal prokaryotic L21 protein BFO_1884 PF01016 Ribosomal L27 protein BFO_1885 PF00877 NlpC/P60 family BFO_1886 PF02403 Seryl-tRNA synthetase N-terminal domain BFO_1886 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BFO_1887 PF00149 Calcineurin-like phosphoesterase BFO_1889 PF13332 Hemagglutinin repeat BFO_1889 PF05860 haemagglutination activity domain BFO_1889 PF02661 Fic/DOC family BFO_1889 PF13018 Extended Signal Peptide of Type V secretion system BFO_1889 PF03543 Yersinia/Haemophilus virulence surface antigen BFO_1892 PF01032 FecCD transport family BFO_1897 PF01330 RuvA N terminal domain BFO_1897 PF07499 RuvA, C-terminal domain BFO_1900 PF13361 UvrD-like helicase C-terminal domain BFO_1900 PF00580 UvrD/REP helicase N-terminal domain BFO_1900 PF12705 PD-(D/E)XK nuclease superfamily BFO_1901 PF02666 Phosphatidylserine decarboxylase BFO_1902 PF01066 CDP-alcohol phosphatidyltransferase BFO_1905 PF13167 GTP-binding GTPase N-terminal BFO_1905 PF16360 GTP-binding GTPase Middle Region BFO_1905 PF01926 50S ribosome-binding GTPase BFO_1914 PF02872 5'-nucleotidase, C-terminal domain BFO_1914 PF00149 Calcineurin-like phosphoesterase BFO_1922 PF08448 PAS fold BFO_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_1922 PF00512 His Kinase A (phospho-acceptor) domain BFO_1922 PF00072 Response regulator receiver domain BFO_1922 PF13426 PAS domain BFO_1923 PF07691 PA14 domain BFO_1923 PF02838 Glycosyl hydrolase family 20, domain 2 BFO_1923 PF00728 Glycosyl hydrolase family 20, catalytic domain BFO_1924 PF00464 Serine hydroxymethyltransferase BFO_1926 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BFO_1926 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BFO_1927 PF02565 Recombination protein O C terminal BFO_1927 PF11967 Recombination protein O N terminal BFO_1930 PF00749 tRNA synthetases class I (E and Q), catalytic domain BFO_1932 PF09587 Bacterial capsule synthesis protein PGA_cap BFO_1933 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_1934 PF01165 Ribosomal protein S21 BFO_1935 PF02899 Phage integrase, N-terminal SAM-like domain BFO_1935 PF00589 Phage integrase family BFO_1939 PF03144 Elongation factor Tu domain 2 BFO_1939 PF03143 Elongation factor Tu C-terminal domain BFO_1939 PF00009 Elongation factor Tu GTP binding domain BFO_1942 PF02357 Transcription termination factor nusG BFO_1942 PF00467 KOW motif BFO_1943 PF03946 Ribosomal protein L11, N-terminal domain BFO_1943 PF00298 Ribosomal protein L11, RNA binding domain BFO_1944 PF00687 Ribosomal protein L1p/L10e family BFO_1945 PF00466 Ribosomal protein L10 BFO_1946 PF00542 Ribosomal protein L7/L12 C-terminal domain BFO_1946 PF16320 Ribosomal protein L7/L12 dimerisation domain BFO_1947 PF04561 RNA polymerase Rpb2, domain 2 BFO_1947 PF04565 RNA polymerase Rpb2, domain 3 BFO_1947 PF00562 RNA polymerase Rpb2, domain 6 BFO_1947 PF04563 RNA polymerase beta subunit BFO_1947 PF10385 RNA polymerase beta subunit external 1 domain BFO_1947 PF04560 RNA polymerase Rpb2, domain 7 BFO_1948 PF04997 RNA polymerase Rpb1, domain 1 BFO_1948 PF04998 RNA polymerase Rpb1, domain 5 BFO_1948 PF04983 RNA polymerase Rpb1, domain 3 BFO_1948 PF00623 RNA polymerase Rpb1, domain 2 BFO_1948 PF05000 RNA polymerase Rpb1, domain 4 BFO_1949 PF05872 Bacterial protein of unknown function (DUF853) BFO_1951 PF00425 chorismate binding enzyme BFO_1952 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BFO_1953 PF00378 Enoyl-CoA hydratase/isomerase BFO_1954 PF13378 Enolase C-terminal domain-like BFO_1954 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BFO_1958 PF02899 Phage integrase, N-terminal SAM-like domain BFO_1958 PF00589 Phage integrase family BFO_1961 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BFO_1961 PF00271 Helicase conserved C-terminal domain BFO_1961 PF04851 Type III restriction enzyme, res subunit BFO_1961 PF08463 EcoEI R protein C-terminal BFO_1962 PF12161 HsdM N-terminal domain BFO_1962 PF02384 N-6 DNA Methylase BFO_1963 PF06250 YhcG PDDEXK nuclease domain BFO_1963 PF17761 DUF1016 N-terminal domain BFO_1964 PF01420 Type I restriction modification DNA specificity domain BFO_1965 PF02899 Phage integrase, N-terminal SAM-like domain BFO_1965 PF00589 Phage integrase family BFO_1966 PF01420 Type I restriction modification DNA specificity domain BFO_1976 PF01261 Xylose isomerase-like TIM barrel BFO_1982 PF00128 Alpha amylase, catalytic domain BFO_1982 PF11941 Domain of unknown function (DUF3459) BFO_1987 PF00535 Glycosyl transferase family 2 BFO_1991 PF02590 Predicted SPOUT methyltransferase BFO_1993 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BFO_1993 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BFO_1995 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_1996 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BFO_2003 PF02689 Helicase BFO_2003 PF05970 PIF1-like helicase BFO_2006 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BFO_2006 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BFO_2006 PF02769 AIR synthase related protein, C-terminal domain BFO_2007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_2007 PF00512 His Kinase A (phospho-acceptor) domain BFO_2008 PF00072 Response regulator receiver domain BFO_2008 PF00486 Transcriptional regulatory protein, C terminal BFO_2013 PF00593 TonB dependent receptor BFO_2013 PF07715 TonB-dependent Receptor Plug Domain BFO_2016 PF00106 short chain dehydrogenase BFO_2020 PF13090 Polyphosphate kinase C-terminal domain 2 BFO_2020 PF02503 Polyphosphate kinase middle domain BFO_2020 PF13089 Polyphosphate kinase N-terminal domain BFO_2020 PF17941 Polyphosphate kinase C-terminal domain 1 BFO_2021 PF00884 Sulfatase BFO_2022 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BFO_2023 PF13180 PDZ domain BFO_2024 PF01264 Chorismate synthase BFO_2027 PF17820 PDZ domain BFO_2027 PF02163 Peptidase family M50 BFO_2029 PF13288 DXP reductoisomerase C-terminal domain BFO_2029 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BFO_2029 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BFO_2030 PF01551 Peptidase family M23 BFO_2031 PF01782 RimM N-terminal domain BFO_2035 PF01964 Radical SAM ThiC family BFO_2035 PF13667 ThiC-associated domain BFO_2036 PF17674 HHH domain BFO_2036 PF16921 Tex protein YqgF-like domain BFO_2036 PF00575 S1 RNA binding domain BFO_2036 PF09371 Tex-like protein N-terminal domain BFO_2039 PF01263 Aldose 1-epimerase BFO_2040 PF07690 Major Facilitator Superfamily BFO_2041 PF00288 GHMP kinases N terminal domain BFO_2041 PF10509 Galactokinase galactose-binding signature BFO_2041 PF08544 GHMP kinases C terminal BFO_2043 PF12848 ABC transporter BFO_2043 PF00005 ABC transporter BFO_2043 PF16326 ABC transporter C-terminal domain BFO_2044 PF00571 CBS domain BFO_2044 PF00478 IMP dehydrogenase / GMP reductase domain BFO_2045 PF07670 Nucleoside recognition BFO_2045 PF04023 FeoA domain BFO_2045 PF07664 Ferrous iron transport protein B C terminus BFO_2045 PF17910 FeoB cytosolic helical domain BFO_2045 PF02421 Ferrous iron transport protein B BFO_2047 PF07694 5TMR of 5TMR-LYT BFO_2047 PF13492 GAF domain BFO_2047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_2047 PF06580 Histidine kinase BFO_2048 PF00072 Response regulator receiver domain BFO_2048 PF04397 LytTr DNA-binding domain BFO_2068 PF03952 Enolase, N-terminal domain BFO_2068 PF00113 Enolase, C-terminal TIM barrel domain BFO_2070 PF00258 Flavodoxin BFO_2075 PF02514 CobN/Magnesium Chelatase BFO_2076 PF07715 TonB-dependent Receptor Plug Domain BFO_2076 PF00593 TonB dependent receptor BFO_2077 PF00593 TonB dependent receptor BFO_2077 PF07715 TonB-dependent Receptor Plug Domain BFO_2081 PF03477 ATP cone domain BFO_2081 PF02867 Ribonucleotide reductase, barrel domain BFO_2081 PF00317 Ribonucleotide reductase, all-alpha domain BFO_2082 PF00268 Ribonucleotide reductase, small chain BFO_2083 PF12799 Leucine Rich repeats (2 copies) BFO_2083 PF12354 Bacterial adhesion/invasion protein N terminal BFO_2083 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) BFO_2083 PF00746 LPXTG cell wall anchor motif BFO_2083 PF08191 LRR adjacent BFO_2092 PF07075 Protein of unknown function (DUF1343) BFO_2094 PF00572 Ribosomal protein L13 BFO_2095 PF00380 Ribosomal protein S9/S16 BFO_2096 PF00318 Ribosomal protein S2 BFO_2097 PF00889 Elongation factor TS BFO_2098 PF00005 ABC transporter BFO_2107 PF00593 TonB dependent receptor BFO_2107 PF07715 TonB-dependent Receptor Plug Domain BFO_2112 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BFO_2112 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BFO_2112 PF02142 MGS-like domain BFO_2116 PF00999 Sodium/hydrogen exchanger family BFO_2116 PF02254 TrkA-N domain BFO_2118 PF01256 Carbohydrate kinase BFO_2123 PF01966 HD domain BFO_2123 PF00013 KH domain BFO_2123 PF12072 Domain of unknown function (DUF3552) BFO_2124 PF00005 ABC transporter BFO_2124 PF12848 ABC transporter BFO_2125 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BFO_2125 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BFO_2127 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BFO_2128 PF16363 GDP-mannose 4,6 dehydratase BFO_2129 PF02132 RecR protein BFO_2129 PF13662 Toprim domain BFO_2133 PF01555 DNA methylase BFO_2136 PF03167 Uracil DNA glycosylase superfamily BFO_2140 PF07075 Protein of unknown function (DUF1343) BFO_2141 PF00111 2Fe-2S iron-sulfur cluster binding domain BFO_2141 PF00175 Oxidoreductase NAD-binding domain BFO_2141 PF00970 Oxidoreductase FAD-binding domain BFO_2142 PF02508 Rnf-Nqr subunit, membrane protein BFO_2143 PF02508 Rnf-Nqr subunit, membrane protein BFO_2144 PF04205 FMN-binding domain BFO_2145 PF03116 NQR2, RnfD, RnfE family BFO_2146 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BFO_2146 PF11973 NQRA C-terminal domain BFO_2148 PF04225 Opacity-associated protein A LysM-like domain BFO_2148 PF01551 Peptidase family M23 BFO_2149 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BFO_2149 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BFO_2149 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BFO_2149 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BFO_2150 PF14489 QueF-like protein BFO_2151 PF01926 50S ribosome-binding GTPase BFO_2151 PF01018 GTP1/OBG BFO_2154 PF00005 ABC transporter BFO_2156 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BFO_2159 PF00535 Glycosyl transferase family 2 BFO_2161 PF00474 Sodium:solute symporter family BFO_2162 PF06123 Inner membrane protein CreD BFO_2171 PF00085 Thioredoxin BFO_2172 PF00849 RNA pseudouridylate synthase BFO_2173 PF00144 Beta-lactamase BFO_2175 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BFO_2175 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BFO_2176 PF00440 Bacterial regulatory proteins, tetR family BFO_2176 PF17932 Tetracyclin repressor-like, C-terminal domain BFO_2182 PF14310 Fibronectin type III-like domain BFO_2182 PF01915 Glycosyl hydrolase family 3 C-terminal domain BFO_2182 PF00933 Glycosyl hydrolase family 3 N terminal domain BFO_2183 PF00691 OmpA family BFO_2189 PF00004 ATPase family associated with various cellular activities (AAA) BFO_2189 PF02861 Clp amino terminal domain, pathogenicity island component BFO_2189 PF10431 C-terminal, D2-small domain, of ClpB protein BFO_2189 PF07724 AAA domain (Cdc48 subfamily) BFO_2189 PF17871 AAA lid domain BFO_2190 PF00814 Glycoprotease family BFO_2202 PF00701 Dihydrodipicolinate synthetase family BFO_2204 PF07690 Major Facilitator Superfamily BFO_2205 PF00593 TonB dependent receptor BFO_2205 PF07715 TonB-dependent Receptor Plug Domain BFO_2207 PF14873 N-terminal domain of BNR-repeat neuraminidase BFO_2207 PF13859 BNR repeat-like domain BFO_2208 PF00728 Glycosyl hydrolase family 20, catalytic domain BFO_2208 PF02838 Glycosyl hydrolase family 20, domain 2 BFO_2208 PF07691 PA14 domain BFO_2210 PF01344 Kelch motif BFO_2213 PF00593 TonB dependent receptor BFO_2213 PF07715 TonB-dependent Receptor Plug Domain BFO_2214 PF06180 Cobalt chelatase (CbiK) BFO_2217 PF00593 TonB dependent receptor BFO_2217 PF07715 TonB-dependent Receptor Plug Domain BFO_2219 PF02424 ApbE family BFO_2224 PF01966 HD domain BFO_2224 PF07698 7TM receptor with intracellular HD hydrolase BFO_2224 PF07697 7TM-HD extracellular BFO_2248 PF16363 GDP-mannose 4,6 dehydratase BFO_2258 PF12849 PBP superfamily domain BFO_2259 PF00485 Phosphoribulokinase / Uridine kinase family BFO_2263 PF00005 ABC transporter BFO_2264 PF00005 ABC transporter BFO_2269 PF16411 Outer membrane protein SusF_SusE BFO_2269 PF14292 SusE outer membrane protein BFO_2270 PF07980 SusD family BFO_2271 PF00593 TonB dependent receptor BFO_2271 PF07715 TonB-dependent Receptor Plug Domain BFO_2272 PF14508 Glycosyl-hydrolase 97 N-terminal BFO_2272 PF10566 Glycoside hydrolase 97 BFO_2272 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BFO_2273 PF08241 Methyltransferase domain BFO_2274 PF01702 Queuine tRNA-ribosyltransferase BFO_2277 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BFO_2279 PF00301 Rubredoxin BFO_2280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BFO_2280 PF03466 LysR substrate binding domain BFO_2282 PF00924 Mechanosensitive ion channel BFO_2283 PF00899 ThiF family BFO_2285 PF07470 Glycosyl Hydrolase Family 88 BFO_2286 PF00593 TonB dependent receptor BFO_2286 PF07715 TonB-dependent Receptor Plug Domain BFO_2288 PF04962 KduI/IolB family BFO_2290 PF00884 Sulfatase BFO_2293 PF00106 short chain dehydrogenase BFO_2295 PF07690 Major Facilitator Superfamily BFO_2299 PF02687 FtsX-like permease family BFO_2299 PF12704 MacB-like periplasmic core domain BFO_2313 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BFO_2315 PF13742 OB-fold nucleic acid binding domain BFO_2315 PF02601 Exonuclease VII, large subunit BFO_2318 PF03590 Aspartate-ammonia ligase BFO_2319 PF18318 Glutamine synthetase C-terminal domain BFO_2319 PF00120 Glutamine synthetase, catalytic domain BFO_2319 PF12437 Glutamine synthetase type III N terminal BFO_2320 PF02540 NAD synthase BFO_2320 PF00795 Carbon-nitrogen hydrolase BFO_2321 PF01734 Patatin-like phospholipase BFO_2323 PF02677 Epoxyqueuosine reductase QueH BFO_2324 PF04371 Porphyromonas-type peptidyl-arginine deiminase BFO_2325 PF00795 Carbon-nitrogen hydrolase BFO_2333 PF00270 DEAD/DEAH box helicase BFO_2333 PF18395 Cas3 C-terminal domain BFO_2333 PF18019 HD domain BFO_2335 PF02661 Fic/DOC family BFO_2335 PF12728 Helix-turn-helix domain BFO_2337 PF18211 Csm1 subunit domain B BFO_2339 PF03787 RAMP superfamily BFO_2341 PF03787 RAMP superfamily BFO_2343 PF01867 CRISPR associated protein Cas1 BFO_2344 PF09827 CRISPR associated protein Cas2 BFO_2494 PF00210 Ferritin-like domain BFO_2495 PF03030 Inorganic H+ pyrophosphatase BFO_2497 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BFO_2498 PF13361 UvrD-like helicase C-terminal domain BFO_2498 PF00580 UvrD/REP helicase N-terminal domain BFO_2499 PF00216 Bacterial DNA-binding protein BFO_2500 PF02152 Dihydroneopterin aldolase BFO_2501 PF02446 4-alpha-glucanotransferase BFO_2503 PF03477 ATP cone domain BFO_2503 PF00317 Ribonucleotide reductase, all-alpha domain BFO_2503 PF02867 Ribonucleotide reductase, barrel domain BFO_2504 PF00037 4Fe-4S binding domain BFO_2507 PF17862 AAA+ lid domain BFO_2507 PF00004 ATPase family associated with various cellular activities (AAA) BFO_2507 PF01434 Peptidase family M41 BFO_2511 PF00746 LPXTG cell wall anchor motif BFO_2511 PF12354 Bacterial adhesion/invasion protein N terminal BFO_2511 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) BFO_2511 PF12799 Leucine Rich repeats (2 copies) BFO_2511 PF08191 LRR adjacent BFO_2513 PF07715 TonB-dependent Receptor Plug Domain BFO_2513 PF00593 TonB dependent receptor BFO_2519 PF03060 Nitronate monooxygenase BFO_2521 PF08245 Mur ligase middle domain BFO_2522 PF02562 PhoH-like protein BFO_2522 PF13638 PIN domain BFO_2523 PF06508 Queuosine biosynthesis protein QueC BFO_2524 PF01545 Cation efflux family BFO_2524 PF16916 Dimerisation domain of Zinc Transporter BFO_2532 PF02768 DNA polymerase III beta subunit, C-terminal domain BFO_2532 PF00712 DNA polymerase III beta subunit, N-terminal domain BFO_2532 PF02767 DNA polymerase III beta subunit, central domain BFO_2534 PF04127 DNA / pantothenate metabolism flavoprotein BFO_2534 PF02441 Flavoprotein BFO_2536 PF02463 RecF/RecN/SMC N terminal domain BFO_2537 PF08032 RNA 2'-O ribose methyltransferase substrate binding BFO_2537 PF00588 SpoU rRNA Methylase family BFO_2538 PF00453 Ribosomal protein L20 BFO_2539 PF01632 Ribosomal protein L35 BFO_2540 PF00707 Translation initiation factor IF-3, C-terminal domain BFO_2540 PF05198 Translation initiation factor IF-3, N-terminal domain BFO_2541 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BFO_2541 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BFO_2541 PF02824 TGS domain BFO_2541 PF03129 Anticodon binding domain BFO_2543 PF07687 Peptidase dimerisation domain BFO_2543 PF01546 Peptidase family M20/M25/M40 BFO_2547 PF01979 Amidohydrolase family BFO_2548 PF00465 Iron-containing alcohol dehydrogenase BFO_2553 PF02837 Glycosyl hydrolases family 2, sugar binding domain BFO_2553 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BFO_2553 PF00703 Glycosyl hydrolases family 2 BFO_2553 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BFO_2553 PF16355 Domain of unknown function (DUF4982) BFO_2554 PF13419 Haloacid dehalogenase-like hydrolase BFO_2557 PF09115 DNA polymerase III, delta subunit, C terminal BFO_2558 PF02219 Methylenetetrahydrofolate reductase BFO_2560 PF01554 MatE BFO_2562 PF00593 TonB dependent receptor BFO_2562 PF07715 TonB-dependent Receptor Plug Domain BFO_2566 PF02350 UDP-N-acetylglucosamine 2-epimerase BFO_2569 PF00154 recA bacterial DNA recombination protein BFO_2570 PF00578 AhpC/TSA family BFO_2571 PF16653 Saccharopine dehydrogenase C-terminal domain BFO_2571 PF03435 Saccharopine dehydrogenase NADP binding domain BFO_2574 PF07977 FabA-like domain BFO_2575 PF00535 Glycosyl transferase family 2 BFO_2589 PF05593 RHS Repeat BFO_2589 PF03527 RHS protein BFO_2596 PF12706 Beta-lactamase superfamily domain BFO_2597 PF02811 PHP domain BFO_2597 PF14480 DNA polymerase III polC-type N-terminus I BFO_2597 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BFO_2597 PF14579 Helix-hairpin-helix motif BFO_2597 PF07733 Bacterial DNA polymerase III alpha NTPase domain BFO_2597 PF00929 Exonuclease BFO_2597 PF11490 DNA polymerase III polC-type N-terminus II BFO_2600 PF00593 TonB dependent receptor BFO_2600 PF07715 TonB-dependent Receptor Plug Domain BFO_2606 PF00842 Alanine racemase, C-terminal domain BFO_2606 PF01168 Alanine racemase, N-terminal domain BFO_2610 PF04225 Opacity-associated protein A LysM-like domain BFO_2610 PF01551 Peptidase family M23 BFO_2613 PF00121 Triosephosphate isomerase BFO_2615 PF01227 GTP cyclohydrolase I BFO_2616 PF01300 Telomere recombination BFO_2619 PF03577 Peptidase family C69 BFO_2621 PF07715 TonB-dependent Receptor Plug Domain BFO_2621 PF00593 TonB dependent receptor BFO_2624 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BFO_2624 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BFO_2625 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BFO_2625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BFO_2626 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BFO_2626 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BFO_2635 PF07715 TonB-dependent Receptor Plug Domain BFO_2635 PF00593 TonB dependent receptor BFO_2639 PF07715 TonB-dependent Receptor Plug Domain BFO_2639 PF00593 TonB dependent receptor BFO_2640 PF04052 TolB amino-terminal domain BFO_2640 PF07676 WD40-like Beta Propeller Repeat BFO_2642 PF01979 Amidohydrolase family BFO_2643 PF00535 Glycosyl transferase family 2 BFO_2644 PF02638 Glycosyl hydrolase-like 10 BFO_2645 PF01370 NAD dependent epimerase/dehydratase family BFO_2648 PF01520 N-acetylmuramoyl-L-alanine amidase BFO_2648 PF01476 LysM domain BFO_2652 PF01476 LysM domain BFO_2652 PF01464 Transglycosylase SLT domain BFO_2653 PF00005 ABC transporter BFO_2653 PF17755 UvrA DNA-binding domain BFO_2653 PF17760 UvrA interaction domain BFO_2655 PF01205 Uncharacterized protein family UPF0029 BFO_2655 PF09186 Domain of unknown function (DUF1949) BFO_2658 PF00557 Metallopeptidase family M24 BFO_2658 PF01321 Creatinase/Prolidase N-terminal domain BFO_2659 PF00245 Alkaline phosphatase BFO_2661 PF00413 Matrixin BFO_2665 PF00413 Matrixin BFO_2669 PF00413 Matrixin BFO_2675 PF00413 Matrixin BFO_2679 PF00413 Matrixin BFO_2689 PF02638 Glycosyl hydrolase-like 10 BFO_2691 PF07992 Pyridine nucleotide-disulphide oxidoreductase BFO_2693 PF09397 Ftsk gamma domain BFO_2693 PF01580 FtsK/SpoIIIE family BFO_2693 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BFO_2693 PF17854 FtsK alpha domain BFO_2694 PF01336 OB-fold nucleic acid binding domain BFO_2694 PF00152 tRNA synthetases class II (D, K and N) BFO_2694 PF02938 GAD domain BFO_2695 PF01784 NIF3 (NGG1p interacting factor 3) BFO_2697 PF11734 TilS substrate C-terminal domain BFO_2697 PF01171 PP-loop family BFO_2698 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BFO_2698 PF07497 Rho termination factor, RNA-binding domain BFO_2700 PF00578 AhpC/TSA family BFO_2700 PF10417 C-terminal domain of 1-Cys peroxiredoxin BFO_2702 PF00072 Response regulator receiver domain BFO_2702 PF00196 Bacterial regulatory proteins, luxR family BFO_2705 PF06738 Putative threonine/serine exporter BFO_2712 PF02436 Conserved carboxylase domain BFO_2712 PF00682 HMGL-like BFO_2713 PF02652 L-lactate permease BFO_2714 PF02589 LUD domain BFO_2715 PF13183 4Fe-4S dicluster domain BFO_2715 PF02589 LUD domain BFO_2715 PF11870 Domain of unknown function (DUF3390) BFO_2716 PF02754 Cysteine-rich domain BFO_2719 PF13344 Haloacid dehalogenase-like hydrolase BFO_2719 PF00293 NUDIX domain BFO_2724 PF00912 Transglycosylase BFO_2725 PF03099 Biotin/lipoate A/B protein ligase family BFO_2726 PF14109 GldH lipoprotein BFO_2727 PF04468 PSP1 C-terminal conserved region BFO_2728 PF00155 Aminotransferase class I and II BFO_2729 PF05175 Methyltransferase small domain BFO_2731 PF01546 Peptidase family M20/M25/M40 BFO_2731 PF07687 Peptidase dimerisation domain BFO_2732 PF01979 Amidohydrolase family BFO_2743 PF00593 TonB dependent receptor BFO_2743 PF07715 TonB-dependent Receptor Plug Domain BFO_2744 PF07980 SusD family BFO_2746 PF01642 Methylmalonyl-CoA mutase BFO_2747 PF01642 Methylmalonyl-CoA mutase BFO_2747 PF02310 B12 binding domain BFO_2749 PF16326 ABC transporter C-terminal domain BFO_2749 PF12848 ABC transporter BFO_2749 PF00005 ABC transporter BFO_2751 PF02348 Cytidylyltransferase BFO_2752 PF14849 YidC periplasmic domain BFO_2752 PF02096 60Kd inner membrane protein BFO_2753 PF00117 Glutamine amidotransferase class-I BFO_2753 PF06418 CTP synthase N-terminus BFO_2754 PF05190 MutS family domain IV BFO_2754 PF01624 MutS domain I BFO_2754 PF05192 MutS domain III BFO_2754 PF00488 MutS domain V BFO_2754 PF05188 MutS domain II BFO_2758 PF04060 Putative Fe-S cluster BFO_2758 PF13187 4Fe-4S dicluster domain BFO_2758 PF00037 4Fe-4S binding domain BFO_2759 PF13237 4Fe-4S dicluster domain BFO_2759 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BFO_2759 PF10531 SLBB domain BFO_2759 PF13375 RnfC Barrel sandwich hybrid domain BFO_2760 PF03116 NQR2, RnfD, RnfE family BFO_2761 PF04205 FMN-binding domain BFO_2762 PF02508 Rnf-Nqr subunit, membrane protein BFO_2763 PF02508 Rnf-Nqr subunit, membrane protein BFO_2773 PF00860 Permease family BFO_2775 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BFO_2775 PF00722 Glycosyl hydrolases family 16 BFO_2777 PF00884 Sulfatase BFO_2777 PF16347 Domain of unknown function (DUF4976) BFO_2779 PF01923 Cobalamin adenosyltransferase BFO_2780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BFO_2781 PF05175 Methyltransferase small domain BFO_2782 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BFO_2783 PF01888 CbiD BFO_2784 PF00156 Phosphoribosyl transferase domain BFO_2790 PF00873 AcrB/AcrD/AcrF family BFO_2791 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BFO_2792 PF02321 Outer membrane efflux protein BFO_2795 PF00854 POT family BFO_2801 PF07715 TonB-dependent Receptor Plug Domain BFO_2801 PF00593 TonB dependent receptor BFO_2806 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BFO_2806 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BFO_2807 PF01261 Xylose isomerase-like TIM barrel BFO_2808 PF00083 Sugar (and other) transporter BFO_2812 PF07715 TonB-dependent Receptor Plug Domain BFO_2812 PF00593 TonB dependent receptor BFO_2815 PF02638 Glycosyl hydrolase-like 10 BFO_2815 PF00395 S-layer homology domain BFO_2815 PF02368 Bacterial Ig-like domain (group 2) BFO_2826 PF00696 Amino acid kinase family BFO_2828 PF08544 GHMP kinases C terminal BFO_2828 PF00288 GHMP kinases N terminal domain BFO_2829 PF00270 DEAD/DEAH box helicase BFO_2829 PF00271 Helicase conserved C-terminal domain BFO_2830 PF01464 Transglycosylase SLT domain BFO_2830 PF00497 Bacterial extracellular solute-binding proteins, family 3 BFO_2841 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BFO_2841 PF00749 tRNA synthetases class I (E and Q), catalytic domain BFO_2842 PF02769 AIR synthase related protein, C-terminal domain BFO_2842 PF00586 AIR synthase related protein, N-terminal domain BFO_2844 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BFO_2845 PF01343 Peptidase family S49 BFO_2848 PF01554 MatE BFO_2851 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BFO_2851 PF00326 Prolyl oligopeptidase family BFO_2853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_2853 PF18698 Histidine kinase sensor domain BFO_2853 PF00512 His Kinase A (phospho-acceptor) domain BFO_2853 PF00989 PAS fold BFO_2853 PF00672 HAMP domain BFO_2862 PF02368 Bacterial Ig-like domain (group 2) BFO_2867 PF02347 Glycine cleavage system P-protein BFO_2868 PF00753 Metallo-beta-lactamase superfamily BFO_2869 PF02527 rRNA small subunit methyltransferase G BFO_2872 PF00521 DNA gyrase/topoisomerase IV, subunit A BFO_2872 PF03989 DNA gyrase C-terminal domain, beta-propeller BFO_2876 PF01569 PAP2 superfamily BFO_2880 PF07584 Aerotolerance regulator N-terminal BFO_2880 PF13519 von Willebrand factor type A domain BFO_2881 PF13519 von Willebrand factor type A domain BFO_2883 PF01882 Protein of unknown function DUF58 BFO_2884 PF07726 ATPase family associated with various cellular activities (AAA) BFO_2884 PF17863 AAA lid domain BFO_2886 PF00216 Bacterial DNA-binding protein BFO_2887 PF04055 Radical SAM superfamily BFO_2887 PF00919 Uncharacterized protein family UPF0004 BFO_2887 PF18693 TRAM domain BFO_2888 PF02881 SRP54-type protein, helical bundle domain BFO_2888 PF00448 SRP54-type protein, GTPase domain BFO_2899 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus BFO_2899 PF01048 Phosphorylase superfamily BFO_2902 PF07859 alpha/beta hydrolase fold BFO_2902 PF00331 Glycosyl hydrolase family 10 BFO_2903 PF00575 S1 RNA binding domain BFO_2903 PF10150 Ribonuclease E/G family BFO_2904 PF00216 Bacterial DNA-binding protein BFO_2906 PF14815 NUDIX domain BFO_2906 PF00730 HhH-GPD superfamily base excision DNA repair protein BFO_2906 PF00633 Helix-hairpin-helix motif BFO_2907 PF00436 Single-strand binding protein family BFO_2908 PF00571 CBS domain BFO_2908 PF03471 Transporter associated domain BFO_2912 PF02368 Bacterial Ig-like domain (group 2) BFO_2913 PF03786 D-mannonate dehydratase (UxuA) BFO_2915 PF00593 TonB dependent receptor BFO_2915 PF07715 TonB-dependent Receptor Plug Domain BFO_2919 PF01370 NAD dependent epimerase/dehydratase family BFO_2920 PF01569 PAP2 superfamily BFO_2928 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BFO_2928 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BFO_2929 PF08669 Glycine cleavage T-protein C-terminal barrel domain BFO_2929 PF01571 Aminomethyltransferase folate-binding domain BFO_2930 PF07687 Peptidase dimerisation domain BFO_2930 PF01546 Peptidase family M20/M25/M40 BFO_2932 PF00535 Glycosyl transferase family 2 BFO_2934 PF01252 Signal peptidase (SPase) II BFO_2936 PF08264 Anticodon-binding domain of tRNA BFO_2936 PF00133 tRNA synthetases class I (I, L, M and V) BFO_2938 PF03641 Possible lysine decarboxylase BFO_2939 PF01066 CDP-alcohol phosphatidyltransferase BFO_2943 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BFO_2943 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BFO_2943 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BFO_2944 PF00483 Nucleotidyl transferase BFO_2944 PF01050 Mannose-6-phosphate isomerase BFO_2947 PF17678 Glycosyl hydrolase family 92 N-terminal domain BFO_2947 PF07971 Glycosyl hydrolase family 92 BFO_2948 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BFO_2948 PF01488 Shikimate / quinate 5-dehydrogenase BFO_2948 PF08501 Shikimate dehydrogenase substrate binding domain BFO_2949 PF01209 ubiE/COQ5 methyltransferase family BFO_2950 PF01259 SAICAR synthetase BFO_2951 PF02562 PhoH-like protein BFO_2955 PF05195 Aminopeptidase P, N-terminal domain BFO_2955 PF00557 Metallopeptidase family M24 BFO_2968 PF16355 Domain of unknown function (DUF4982) BFO_2968 PF00703 Glycosyl hydrolases family 2 BFO_2968 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BFO_2968 PF02837 Glycosyl hydrolases family 2, sugar binding domain BFO_2968 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BFO_2969 PF00679 Elongation factor G C-terminus BFO_2969 PF00009 Elongation factor Tu GTP binding domain BFO_2969 PF03144 Elongation factor Tu domain 2 BFO_2969 PF06421 GTP-binding protein LepA C-terminus BFO_2970 PF07715 TonB-dependent Receptor Plug Domain BFO_2970 PF00593 TonB dependent receptor BFO_2973 PF01464 Transglycosylase SLT domain BFO_2973 PF00497 Bacterial extracellular solute-binding proteins, family 3 BFO_2974 PF01938 TRAM domain BFO_2974 PF05958 tRNA (Uracil-5-)-methyltransferase BFO_2975 PF00391 PEP-utilising enzyme, mobile domain BFO_2975 PF02896 PEP-utilising enzyme, TIM barrel domain BFO_2975 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BFO_2981 PF14032 PknH-like extracellular domain BFO_2981 PF00069 Protein kinase domain BFO_2985 PF00593 TonB dependent receptor BFO_2985 PF07715 TonB-dependent Receptor Plug Domain BFO_2989 PF00155 Aminotransferase class I and II BFO_2995 PF01668 SmpB protein BFO_2999 PF00719 Inorganic pyrophosphatase BFO_3002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_3002 PF00672 HAMP domain BFO_3007 PF02390 Putative methyltransferase BFO_3008 PF10609 NUBPL iron-transfer P-loop NTPase BFO_3008 PF01883 Iron-sulfur cluster assembly protein BFO_3010 PF13180 PDZ domain BFO_3010 PF03572 Peptidase family S41 BFO_3011 PF00294 pfkB family carbohydrate kinase BFO_3021 PF00884 Sulfatase BFO_3021 PF08019 Phosphoethanolamine transferase EptA/EptB BFO_3027 PF00158 Sigma-54 interaction domain BFO_3027 PF01590 GAF domain BFO_3027 PF02954 Bacterial regulatory protein, Fis family BFO_3031 PF01467 Cytidylyltransferase-like BFO_3033 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BFO_3035 PF04055 Radical SAM superfamily BFO_3041 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BFO_3042 PF02810 SEC-C motif BFO_3042 PF01043 SecA preprotein cross-linking domain BFO_3042 PF07517 SecA DEAD-like domain BFO_3042 PF07516 SecA Wing and Scaffold domain BFO_3043 PF00512 His Kinase A (phospho-acceptor) domain BFO_3043 PF00072 Response regulator receiver domain BFO_3043 PF13426 PAS domain BFO_3043 PF08448 PAS fold BFO_3043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BFO_3045 PF01327 Polypeptide deformylase BFO_3046 PF03652 Holliday junction resolvase BFO_3047 PF02397 Bacterial sugar transferase BFO_3050 PF00448 SRP54-type protein, GTPase domain BFO_3050 PF02978 Signal peptide binding domain BFO_3050 PF02881 SRP54-type protein, helical bundle domain BFO_3051 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BFO_3051 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BFO_3052 PF12704 MacB-like periplasmic core domain BFO_3052 PF02687 FtsX-like permease family BFO_3053 PF00155 Aminotransferase class I and II BFO_3055 PF07992 Pyridine nucleotide-disulphide oxidoreductase BFO_3055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BFO_3057 PF02622 Uncharacterized ACR, COG1678 BFO_3058 PF01053 Cys/Met metabolism PLP-dependent enzyme BFO_3060 PF00005 ABC transporter BFO_3060 PF13732 Domain of unknown function (DUF4162) BFO_3061 PF10410 DnaB-helicase binding domain of primase BFO_3061 PF08275 DNA primase catalytic core, N-terminal domain BFO_3061 PF01807 CHC2 zinc finger BFO_3077 PF02190 ATP-dependent protease La (LON) substrate-binding domain BFO_3077 PF00004 ATPase family associated with various cellular activities (AAA) BFO_3077 PF05362 Lon protease (S16) C-terminal proteolytic domain BFO_3078 PF00326 Prolyl oligopeptidase family BFO_3078 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BFO_3080 PF07676 WD40-like Beta Propeller Repeat BFO_3080 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BFO_3080 PF00326 Prolyl oligopeptidase family BFO_3081 PF01370 NAD dependent epimerase/dehydratase family BFO_3082 PF02545 Maf-like protein BFO_3084 PF16363 GDP-mannose 4,6 dehydratase BFO_3087 PF14693 Ribosomal protein TL5, C-terminal domain BFO_3087 PF01386 Ribosomal L25p family BFO_3088 PF01195 Peptidyl-tRNA hydrolase BFO_3089 PF01479 S4 domain BFO_3099 PF10502 Signal peptidase, peptidase S26 BFO_3100 PF00664 ABC transporter transmembrane region BFO_3100 PF00005 ABC transporter BFO_3103 PF13533 Biotin-lipoyl like BFO_3106 PF01040 UbiA prenyltransferase family BFO_3110 PF00593 TonB dependent receptor BFO_3110 PF07715 TonB-dependent Receptor Plug Domain BFO_3112 PF02018 Carbohydrate binding domain BFO_3112 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BFO_3115 PF01965 DJ-1/PfpI family BFO_3117 PF02472 Biopolymer transport protein ExbD/TolR BFO_3118 PF01618 MotA/TolQ/ExbB proton channel family BFO_3119 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BFO_3120 PF01513 ATP-NAD kinase BFO_3126 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BFO_3126 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BFO_3126 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BFO_3126 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BFO_3126 PF12838 4Fe-4S dicluster domain BFO_3126 PF10371 Domain of unknown function BFO_3130 PF01063 Amino-transferase class IV BFO_3131 PF15975 Flotillin BFO_3131 PF01145 SPFH domain / Band 7 family BFO_3136 PF02080 TrkA-C domain BFO_3136 PF06826 Predicted Permease Membrane Region BFO_3143 PF00873 AcrB/AcrD/AcrF family BFO_3149 PF04452 RNA methyltransferase BFO_3151 PF03631 Virulence factor BrkB BFO_3153 PF13840 ACT domain BFO_3153 PF00696 Amino acid kinase family BFO_3153 PF01842 ACT domain BFO_3153 PF00742 Homoserine dehydrogenase BFO_3153 PF03447 Homoserine dehydrogenase, NAD binding domain BFO_3154 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase BFO_3154 PF01676 Metalloenzyme superfamily BFO_3156 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BFO_3156 PF02585 GlcNAc-PI de-N-acetylase BFO_3158 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BFO_3158 PF18074 Primosomal protein N C-terminal domain BFO_3158 PF17764 3′ DNA-binding domain (3′BD) BFO_3158 PF00271 Helicase conserved C-terminal domain BFO_3158 PF04851 Type III restriction enzyme, res subunit BFO_3170 PF04304 Protein of unknown function (DUF454) BFO_3171 PF04389 Peptidase family M28 BFO_3171 PF04151 Bacterial pre-peptidase C-terminal domain BFO_3174 PF00881 Nitroreductase family BFO_3175 PF13193 AMP-binding enzyme C-terminal domain BFO_3175 PF00501 AMP-binding enzyme BFO_3176 PF13276 HTH-like domain BFO_3176 PF00665 Integrase core domain BFO_3176 PF13333 Integrase core domain BFO_3185 PF00440 Bacterial regulatory proteins, tetR family BFO_3197 PF13193 AMP-binding enzyme C-terminal domain BFO_3197 PF00501 AMP-binding enzyme BFO_3198 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BFO_3198 PF13378 Enolase C-terminal domain-like BFO_3199 PF00378 Enoyl-CoA hydratase/isomerase BFO_3200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BFO_3201 PF00425 chorismate binding enzyme BFO_3204 PF13173 AAA domain BFO_3204 PF13635 Domain of unknown function (DUF4143) BFO_3209 PF01018 GTP1/OBG BFO_3209 PF01926 50S ribosome-binding GTPase BFO_3209 PF04055 Radical SAM superfamily BFO_3243 PF00589 Phage integrase family BFO_3243 PF02899 Phage integrase, N-terminal SAM-like domain BFO_3245 PF02899 Phage integrase, N-terminal SAM-like domain BFO_3245 PF00589 Phage integrase family BFO_3251 PF01638 HxlR-like helix-turn-helix BFO_3257 PF01497 Periplasmic binding protein BFO_3257 PF12833 Helix-turn-helix domain BFO_3258 PF01554 MatE BFO_3264 PF13635 Domain of unknown function (DUF4143) BFO_3264 PF13173 AAA domain BFO_3270 PF06470 SMC proteins Flexible Hinge Domain BFO_3270 PF02463 RecF/RecN/SMC N terminal domain BFO_3273 PF01434 Peptidase family M41 BFO_3273 PF06480 FtsH Extracellular BFO_3273 PF17862 AAA+ lid domain BFO_3273 PF00004 ATPase family associated with various cellular activities (AAA) BFO_3275 PF01609 Transposase DDE domain BFO_3286 PF01483 Proprotein convertase P-domain BFO_3287 PF00468 Ribosomal protein L34 BFO_3289 PF00849 RNA pseudouridylate synthase BFO_3289 PF01479 S4 domain BFO_3290 PF07478 D-ala D-ala ligase C-terminus BFO_3290 PF01820 D-ala D-ala ligase N-terminus BFO_3292 PF06971 Putative DNA-binding protein N-terminus BFO_3292 PF02629 CoA binding domain BFO_3293 PF01557 Fumarylacetoacetate (FAA) hydrolase family BFO_3297 PF14685 Tricorn protease PDZ domain BFO_3297 PF07676 WD40-like Beta Propeller Repeat BFO_3297 PF03572 Peptidase family S41 BFO_3297 PF14684 Tricorn protease C1 domain BFO_3298 PF02837 Glycosyl hydrolases family 2, sugar binding domain BFO_3298 PF16355 Domain of unknown function (DUF4982) BFO_3298 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BFO_3298 PF00703 Glycosyl hydrolases family 2 BFO_3298 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BFO_3300 PF00795 Carbon-nitrogen hydrolase BFO_3305 PF11897 Protein of unknown function (DUF3417) BFO_3305 PF00343 Carbohydrate phosphorylase BFO_3307 PF00106 short chain dehydrogenase BFO_3311 PF03883 Peroxide stress protein YaaA BFO_3314 PF00593 TonB dependent receptor BFO_3314 PF07715 TonB-dependent Receptor Plug Domain BFO_3327 PF01636 Phosphotransferase enzyme family BFO_3328 PF01197 Ribosomal protein L31 BFO_3329 PF01116 Fructose-bisphosphate aldolase class-II BFO_3330 PF18073 Rubredoxin metal binding domain BFO_3338 PF14602 Hexapeptide repeat of succinyl-transferase BFO_3338 PF12464 Maltose acetyltransferase BFO_3338 PF00132 Bacterial transferase hexapeptide (six repeats) BFO_3339 PF10672 S-adenosylmethionine-dependent methyltransferase BFO_3339 PF17785 PUA-like domain BFO_3342 PF00698 Acyl transferase domain BFO_3343 PF02416 mttA/Hcf106 family BFO_3344 PF00902 Sec-independent protein translocase protein (TatC) BFO_3345 PF00912 Transglycosylase BFO_3345 PF17092 Penicillin-binding protein OB-like domain BFO_3345 PF00905 Penicillin binding protein transpeptidase domain BFO_3346 PF03796 DnaB-like helicase C terminal domain BFO_3346 PF00772 DnaB-like helicase N terminal domain BFO_3348 PF00005 ABC transporter BFO_3348 PF12848 ABC transporter BFO_3350 PF02142 MGS-like domain BFO_3350 PF01808 AICARFT/IMPCHase bienzyme BFO_3354 PF00905 Penicillin binding protein transpeptidase domain BFO_3354 PF03717 Penicillin-binding Protein dimerisation domain BFO_3355 PF01098 Cell cycle protein BFO_3356 PF14229 Domain of unknown function (DUF4332) BFO_3356 PF00152 tRNA synthetases class II (D, K and N) BFO_3356 PF01336 OB-fold nucleic acid binding domain BFO_3357 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BFO_3357 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BFO_3358 PF00342 Phosphoglucose isomerase BFO_3360 PF01250 Ribosomal protein S6 BFO_3361 PF01084 Ribosomal protein S18 BFO_3362 PF01281 Ribosomal protein L9, N-terminal domain BFO_3362 PF03948 Ribosomal protein L9, C-terminal domain BFO_3363 PF01520 N-acetylmuramoyl-L-alanine amidase BFO_3363 PF11741 AMIN domain