locus-tag class description KUI_0001 PF00308 Bacterial dnaA protein KUI_0001 PF11638 DnaA N-terminal domain KUI_0001 PF08299 Bacterial dnaA protein helix-turn-helix KUI_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain KUI_0002 PF02767 DNA polymerase III beta subunit, central domain KUI_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain KUI_0003 PF00204 DNA gyrase B KUI_0003 PF00986 DNA gyrase B subunit, carboxyl terminus KUI_0003 PF18053 DNA gyrase B subunit insert domain KUI_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_0003 PF01751 Toprim domain KUI_0004 PF01479 S4 domain KUI_0004 PF00849 RNA pseudouridylate synthase KUI_0005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_0005 PF00005 ABC transporter KUI_0006 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0007 PF12911 N-terminal TM domain of oligopeptide transport permease C KUI_0007 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0008 PF00005 ABC transporter KUI_0008 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_0009 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUI_0011 PF00580 UvrD/REP helicase N-terminal domain KUI_0011 PF13361 UvrD-like helicase C-terminal domain KUI_0012 PF00970 Oxidoreductase FAD-binding domain KUI_0012 PF00175 Oxidoreductase NAD-binding domain KUI_0014 PF01751 Toprim domain KUI_0014 PF01131 DNA topoisomerase KUI_0015 PF04055 Radical SAM superfamily KUI_0015 PF06969 HemN C-terminal domain KUI_0017 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUI_0018 PF04361 Protein of unknown function (DUF494) KUI_0020 PF00085 Thioredoxin KUI_0020 PF01323 DSBA-like thioredoxin domain KUI_0022 PF03485 Arginyl tRNA synthetase N terminal domain KUI_0022 PF05746 DALR anticodon binding domain KUI_0022 PF00750 tRNA synthetases class I (R) KUI_0024 PF08502 LeuA allosteric (dimerisation) domain KUI_0024 PF00682 HMGL-like KUI_0028 PF00210 Ferritin-like domain KUI_0030 PF00009 Elongation factor Tu GTP binding domain KUI_0030 PF03144 Elongation factor Tu domain 2 KUI_0030 PF16658 Class II release factor RF3, C-terminal domain KUI_0034 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KUI_0034 PF01926 50S ribosome-binding GTPase KUI_0038 PF03956 Lysine exporter LysO KUI_0039 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUI_0040 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0041 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0042 PF00005 ABC transporter KUI_0043 PF01925 Sulfite exporter TauE/SafE KUI_0046 PF01040 UbiA prenyltransferase family KUI_0048 PF02938 GAD domain KUI_0048 PF00152 tRNA synthetases class II (D, K and N) KUI_0048 PF01336 OB-fold nucleic acid binding domain KUI_0050 PF02163 Peptidase family M50 KUI_0051 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KUI_0052 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KUI_0052 PF00534 Glycosyl transferases group 1 KUI_0054 PF03309 Type III pantothenate kinase KUI_0056 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KUI_0057 PF00768 D-alanyl-D-alanine carboxypeptidase KUI_0057 PF07943 Penicillin-binding protein 5, C-terminal domain KUI_0058 PF01063 Amino-transferase class IV KUI_0059 PF04359 Protein of unknown function (DUF493) KUI_0060 PF03099 Biotin/lipoate A/B protein ligase family KUI_0063 PF04055 Radical SAM superfamily KUI_0063 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KUI_0064 PF16363 GDP-mannose 4,6 dehydratase KUI_0065 PF07690 Major Facilitator Superfamily KUI_0066 PF12804 MobA-like NTP transferase domain KUI_0066 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_0066 PF14602 Hexapeptide repeat of succinyl-transferase KUI_0068 PF04542 Sigma-70 region 2 KUI_0068 PF00140 Sigma-70 factor, region 1.2 KUI_0068 PF04545 Sigma-70, region 4 KUI_0070 PF00271 Helicase conserved C-terminal domain KUI_0070 PF03880 DbpA RNA binding domain KUI_0070 PF00270 DEAD/DEAH box helicase KUI_0071 PF00551 Formyl transferase KUI_0071 PF02911 Formyl transferase, C-terminal domain KUI_0072 PF01029 NusB family KUI_0072 PF01189 16S rRNA methyltransferase RsmB/F KUI_0074 PF00672 HAMP domain KUI_0074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_0075 PF00072 Response regulator receiver domain KUI_0075 PF02954 Bacterial regulatory protein, Fis family KUI_0075 PF00158 Sigma-54 interaction domain KUI_0076 PF02080 TrkA-C domain KUI_0076 PF02254 TrkA-N domain KUI_0077 PF02386 Cation transport protein KUI_0078 PF00588 SpoU rRNA Methylase family KUI_0079 PF00156 Phosphoribosyl transferase domain KUI_0080 PF08241 Methyltransferase domain KUI_0082 PF00004 ATPase family associated with various cellular activities (AAA) KUI_0082 PF10431 C-terminal, D2-small domain, of ClpB protein KUI_0082 PF07724 AAA domain (Cdc48 subfamily) KUI_0082 PF17871 AAA lid domain KUI_0087 PF00691 OmpA family KUI_0087 PF13677 Membrane MotB of proton-channel complex MotA/MotB KUI_0094 PF05638 Type VI secretion system effector, Hcp KUI_0099 PF00593 TonB dependent receptor KUI_0099 PF07715 TonB-dependent Receptor Plug Domain KUI_0111 PF04717 Type VI secretion system, phage-baseplate injector KUI_0145 PF02556 Preprotein translocase subunit SecB KUI_0146 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KUI_0146 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KUI_0147 PF00462 Glutaredoxin KUI_0149 PF00300 Histidine phosphatase superfamily (branch 1) KUI_0150 PF01551 Peptidase family M23 KUI_0151 PF13180 PDZ domain KUI_0151 PF03572 Peptidase family S41 KUI_0152 PF00899 ThiF family KUI_0153 PF03480 Bacterial extracellular solute-binding protein, family 7 KUI_0156 PF00119 ATP synthase A chain KUI_0157 PF00137 ATP synthase subunit C KUI_0158 PF00430 ATP synthase B/B' CF(0) KUI_0159 PF00213 ATP synthase delta (OSCP) subunit KUI_0160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUI_0160 PF00306 ATP synthase alpha/beta chain, C terminal domain KUI_0160 PF02874 ATP synthase alpha/beta family, beta-barrel domain KUI_0161 PF00231 ATP synthase KUI_0162 PF02874 ATP synthase alpha/beta family, beta-barrel domain KUI_0162 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUI_0163 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KUI_0168 PF00005 ABC transporter KUI_0171 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KUI_0172 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KUI_0173 PF03480 Bacterial extracellular solute-binding protein, family 7 KUI_0174 PF07683 Cobalamin synthesis protein cobW C-terminal domain KUI_0174 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUI_0175 PF01475 Ferric uptake regulator family KUI_0177 PF00005 ABC transporter KUI_0178 PF00950 ABC 3 transport family KUI_0180 PF00589 Phage integrase family KUI_0180 PF02899 Phage integrase, N-terminal SAM-like domain KUI_0183 PF02637 GatB domain KUI_0183 PF02934 GatB/GatE catalytic domain KUI_0184 PF01425 Amidase KUI_0185 PF02686 Glu-tRNAGln amidotransferase C subunit KUI_0189 PF00905 Penicillin binding protein transpeptidase domain KUI_0189 PF03717 Penicillin-binding Protein dimerisation domain KUI_0190 PF01098 Cell cycle protein KUI_0191 PF18075 FtsX extracellular domain KUI_0192 PF00005 ABC transporter KUI_0193 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0194 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0195 PF00005 ABC transporter KUI_0199 PF02569 Pantoate-beta-alanine ligase KUI_0200 PF02616 Segregation and condensation protein ScpA KUI_0203 PF01121 Dephospho-CoA kinase KUI_0204 PF07072 Cell division protein KUI_0205 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_0206 PF00293 NUDIX domain KUI_0208 PF00348 Polyprenyl synthetase KUI_0209 PF00920 Dehydratase family KUI_0210 PF01018 GTP1/OBG KUI_0210 PF01926 50S ribosome-binding GTPase KUI_0213 PF00004 ATPase family associated with various cellular activities (AAA) KUI_0213 PF07724 AAA domain (Cdc48 subfamily) KUI_0213 PF10431 C-terminal, D2-small domain, of ClpB protein KUI_0214 PF00227 Proteasome subunit KUI_0216 PF01258 Prokaryotic dksA/traR C4-type zinc finger KUI_0218 PF01208 Uroporphyrinogen decarboxylase (URO-D) KUI_0219 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KUI_0219 PF18074 Primosomal protein N C-terminal domain KUI_0219 PF00271 Helicase conserved C-terminal domain KUI_0219 PF00270 DEAD/DEAH box helicase KUI_0219 PF17764 3′ DNA-binding domain (3′BD) KUI_0220 PF01557 Fumarylacetoacetate (FAA) hydrolase family KUI_0224 PF09827 CRISPR associated protein Cas2 KUI_0225 PF01867 CRISPR associated protein Cas1 KUI_0231 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUI_0232 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0233 PF12911 N-terminal TM domain of oligopeptide transport permease C KUI_0233 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0234 PF00005 ABC transporter KUI_0234 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_0235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_0235 PF00005 ABC transporter KUI_0239 PF01016 Ribosomal L27 protein KUI_0240 PF00829 Ribosomal prokaryotic L21 protein KUI_0242 PF00834 Ribulose-phosphate 3 epimerase family KUI_0243 PF06725 3D domain KUI_0243 PF03562 MltA specific insert domain KUI_0244 PF10411 Disulfide bond isomerase protein N-terminus KUI_0244 PF13098 Thioredoxin-like domain KUI_0246 PF04972 BON domain KUI_0247 PF13580 SIS domain KUI_0248 PF02021 Uncharacterised protein family UPF0102 KUI_0249 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KUI_0250 PF05036 Sporulation related domain KUI_0250 PF03330 Lytic transglycolase KUI_0251 PF03668 P-loop ATPase protein family KUI_0252 PF02603 HPr Serine kinase N terminus KUI_0252 PF07475 HPr Serine kinase C-terminal domain KUI_0253 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KUI_0254 PF00005 ABC transporter KUI_0258 PF00571 CBS domain KUI_0258 PF01380 SIS domain KUI_0259 PF00156 Phosphoribosyl transferase domain KUI_0260 PF00291 Pyridoxal-phosphate dependent enzyme KUI_0260 PF00585 C-terminal regulatory domain of Threonine dehydratase KUI_0261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_0261 PF11808 Phosphate regulon sensor protein PhoR KUI_0261 PF00512 His Kinase A (phospho-acceptor) domain KUI_0261 PF00989 PAS fold KUI_0262 PF00072 Response regulator receiver domain KUI_0262 PF00486 Transcriptional regulatory protein, C terminal KUI_0263 PF01209 ubiE/COQ5 methyltransferase family KUI_0265 PF03109 ABC1 family KUI_0266 PF01467 Cytidylyltransferase-like KUI_0268 PF08543 Phosphomethylpyrimidine kinase KUI_0269 PF03976 Polyphosphate kinase 2 (PPK2) KUI_0270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUI_0270 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUI_0272 PF06508 Queuosine biosynthesis protein QueC KUI_0273 PF01242 6-pyruvoyl tetrahydropterin synthase KUI_0274 PF04055 Radical SAM superfamily KUI_0279 PF01488 Shikimate / quinate 5-dehydrogenase KUI_0279 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KUI_0279 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KUI_0280 PF00472 RF-1 domain KUI_0280 PF03462 PCRF domain KUI_0281 PF13847 Methyltransferase domain KUI_0281 PF17827 PrmC N-terminal domain KUI_0282 PF00462 Glutaredoxin KUI_0283 PF02441 Flavoprotein KUI_0285 PF00939 Sodium:sulfate symporter transmembrane region KUI_0286 PF01266 FAD dependent oxidoreductase KUI_0292 PF00202 Aminotransferase class-III KUI_0292 PF06968 Biotin and Thiamin Synthesis associated domain KUI_0292 PF04055 Radical SAM superfamily KUI_0293 PF00155 Aminotransferase class I and II KUI_0294 PF04301 Protein of unknown function (DUF452) KUI_0295 PF08241 Methyltransferase domain KUI_0297 PF03009 Glycerophosphoryl diester phosphodiesterase family KUI_0298 PF08240 Alcohol dehydrogenase GroES-like domain KUI_0298 PF00107 Zinc-binding dehydrogenase KUI_0301 PF01169 Uncharacterized protein family UPF0016 KUI_0303 PF14489 QueF-like protein KUI_0303 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KUI_0305 PF00593 TonB dependent receptor KUI_0305 PF07715 TonB-dependent Receptor Plug Domain KUI_0306 PF01171 PP-loop family KUI_0308 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUI_0310 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0311 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0312 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUI_0314 PF04055 Radical SAM superfamily KUI_0314 PF06968 Biotin and Thiamin Synthesis associated domain KUI_0315 PF00582 Universal stress protein family KUI_0316 PF00929 Exonuclease KUI_0317 PF00929 Exonuclease KUI_0320 PF00551 Formyl transferase KUI_0325 PF01510 N-acetylmuramoyl-L-alanine amidase KUI_0327 PF01578 Cytochrome C assembly protein KUI_0328 PF00448 SRP54-type protein, GTPase domain KUI_0328 PF02881 SRP54-type protein, helical bundle domain KUI_0328 PF02978 Signal peptide binding domain KUI_0329 PF04972 BON domain KUI_0329 PF01476 LysM domain KUI_0330 PF02390 Putative methyltransferase KUI_0331 PF09334 tRNA synthetases class I (M) KUI_0331 PF01588 Putative tRNA binding domain KUI_0333 PF10609 NUBPL iron-transfer P-loop NTPase KUI_0336 PF00692 dUTPase KUI_0339 PF01571 Aminomethyltransferase folate-binding domain KUI_0339 PF08669 Glycine cleavage T-protein C-terminal barrel domain KUI_0340 PF01597 Glycine cleavage H-protein KUI_0341 PF02347 Glycine cleavage system P-protein KUI_0342 PF00303 Thymidylate synthase KUI_0343 PF00186 Dihydrofolate reductase KUI_0344 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KUI_0344 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KUI_0344 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KUI_0345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUI_0345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUI_0345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUI_0345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUI_0346 PF02913 FAD linked oxidases, C-terminal domain KUI_0346 PF01565 FAD binding domain KUI_0347 PF13181 Tetratricopeptide repeat KUI_0347 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) KUI_0348 PF03550 Outer membrane lipoprotein LolB KUI_0349 PF08544 GHMP kinases C terminal KUI_0349 PF00288 GHMP kinases N terminal domain KUI_0351 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KUI_0351 PF14572 Phosphoribosyl synthetase-associated domain KUI_0352 PF01386 Ribosomal L25p family KUI_0352 PF14693 Ribosomal protein TL5, C-terminal domain KUI_0353 PF03895 YadA-like membrane anchor domain KUI_0353 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_0353 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin KUI_0353 PF13018 Extended Signal Peptide of Type V secretion system KUI_0354 PF03895 YadA-like membrane anchor domain KUI_0354 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_0354 PF13018 Extended Signal Peptide of Type V secretion system KUI_0354 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin KUI_0356 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_0356 PF05658 Head domain of trimeric autotransporter adhesin KUI_0356 PF03895 YadA-like membrane anchor domain KUI_0356 PF13018 Extended Signal Peptide of Type V secretion system KUI_0358 PF01195 Peptidyl-tRNA hydrolase KUI_0360 PF06071 Protein of unknown function (DUF933) KUI_0360 PF01926 50S ribosome-binding GTPase KUI_0361 PF00037 4Fe-4S binding domain KUI_0362 PF01467 Cytidylyltransferase-like KUI_0364 PF00448 SRP54-type protein, GTPase domain KUI_0364 PF02881 SRP54-type protein, helical bundle domain KUI_0367 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KUI_0367 PF00925 GTP cyclohydrolase II KUI_0368 PF00885 6,7-dimethyl-8-ribityllumazine synthase KUI_0369 PF01029 NusB family KUI_0370 PF00586 AIR synthase related protein, N-terminal domain KUI_0370 PF02769 AIR synthase related protein, C-terminal domain KUI_0371 PF04608 Phosphatidylglycerophosphatase A KUI_0372 PF02464 Competence-damaged protein KUI_0373 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KUI_0374 PF01219 Prokaryotic diacylglycerol kinase KUI_0375 PF00118 TCP-1/cpn60 chaperonin family KUI_0376 PF00166 Chaperonin 10 Kd subunit KUI_0377 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUI_0380 PF00561 alpha/beta hydrolase fold KUI_0382 PF00691 OmpA family KUI_0383 PF04052 TolB amino-terminal domain KUI_0383 PF07676 WD40-like Beta Propeller Repeat KUI_0385 PF02472 Biopolymer transport protein ExbD/TolR KUI_0386 PF01618 MotA/TolQ/ExbB proton channel family KUI_0387 PF03061 Thioesterase superfamily KUI_0388 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUI_0388 PF03129 Anticodon binding domain KUI_0388 PF04073 Aminoacyl-tRNA editing domain KUI_0389 PF00293 NUDIX domain KUI_0390 PF01926 50S ribosome-binding GTPase KUI_0390 PF12631 MnmE helical domain KUI_0390 PF10396 GTP-binding protein TrmE N-terminus KUI_0394 PF01790 Prolipoprotein diacylglyceryl transferase KUI_0395 PF00171 Aldehyde dehydrogenase family KUI_0395 PF01619 Proline dehydrogenase KUI_0395 PF14850 DNA-binding domain of Proline dehydrogenase KUI_0395 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KUI_0396 PF00474 Sodium:solute symporter family KUI_0397 PF04072 Leucine carboxyl methyltransferase KUI_0405 PF05658 Head domain of trimeric autotransporter adhesin KUI_0405 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_0405 PF03895 YadA-like membrane anchor domain KUI_0405 PF13018 Extended Signal Peptide of Type V secretion system KUI_0406 PF00209 Sodium:neurotransmitter symporter family KUI_0407 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KUI_0407 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KUI_0408 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_0410 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KUI_0411 PF01061 ABC-2 type transporter KUI_0412 PF14524 Wzt C-terminal domain KUI_0412 PF00005 ABC transporter KUI_0416 PF00733 Asparagine synthase KUI_0416 PF13537 Glutamine amidotransferase domain KUI_0418 PF02350 UDP-N-acetylglucosamine 2-epimerase KUI_0419 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KUI_0420 PF02397 Bacterial sugar transferase KUI_0423 PF01757 Acyltransferase family KUI_0424 PF02719 Polysaccharide biosynthesis protein KUI_0425 PF03971 Monomeric isocitrate dehydrogenase KUI_0427 PF01979 Amidohydrolase family KUI_0428 PF01596 O-methyltransferase KUI_0430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUI_0431 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUI_0432 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0433 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0433 PF12911 N-terminal TM domain of oligopeptide transport permease C KUI_0434 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_0434 PF00005 ABC transporter KUI_0435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_0435 PF00005 ABC transporter KUI_0436 PF00550 Phosphopantetheine attachment site KUI_0436 PF08659 KR domain KUI_0436 PF00109 Beta-ketoacyl synthase, N-terminal domain KUI_0436 PF00698 Acyl transferase domain KUI_0436 PF14765 Polyketide synthase dehydratase KUI_0436 PF16197 Ketoacyl-synthetase C-terminal extension KUI_0436 PF08240 Alcohol dehydrogenase GroES-like domain KUI_0436 PF02801 Beta-ketoacyl synthase, C-terminal domain KUI_0438 PF00121 Triosephosphate isomerase KUI_0439 PF03840 Preprotein translocase SecG subunit KUI_0443 PF00127 Copper binding proteins, plastocyanin/azurin family KUI_0444 PF13609 Gram-negative porin KUI_0445 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KUI_0446 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KUI_0448 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KUI_0450 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KUI_0450 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KUI_0450 PF10531 SLBB domain KUI_0451 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KUI_0451 PF00384 Molybdopterin oxidoreductase KUI_0451 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal KUI_0452 PF00146 NADH dehydrogenase KUI_0453 PF12838 4Fe-4S dicluster domain KUI_0454 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KUI_0455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KUI_0456 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KUI_0456 PF00361 Proton-conducting membrane transporter KUI_0457 PF00361 Proton-conducting membrane transporter KUI_0457 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus KUI_0458 PF00361 Proton-conducting membrane transporter KUI_0461 PF17757 UvrB interaction domain KUI_0461 PF03461 TRCF domain KUI_0461 PF00271 Helicase conserved C-terminal domain KUI_0461 PF00270 DEAD/DEAH box helicase KUI_0461 PF02559 CarD-like/TRCF domain KUI_0462 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KUI_0462 PF02542 YgbB family KUI_0463 PF02627 Carboxymuconolactone decarboxylase family KUI_0464 PF00578 AhpC/TSA family KUI_0465 PF00672 HAMP domain KUI_0465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_0465 PF00512 His Kinase A (phospho-acceptor) domain KUI_0466 PF00072 Response regulator receiver domain KUI_0466 PF00486 Transcriptional regulatory protein, C terminal KUI_0467 PF00814 Glycoprotease family KUI_0469 PF07690 Major Facilitator Superfamily KUI_0470 PF06470 SMC proteins Flexible Hinge Domain KUI_0470 PF02463 RecF/RecN/SMC N terminal domain KUI_0472 PF00533 BRCA1 C Terminus (BRCT) domain KUI_0472 PF01653 NAD-dependent DNA ligase adenylation domain KUI_0472 PF03120 NAD-dependent DNA ligase OB-fold domain KUI_0472 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KUI_0472 PF12826 Helix-hairpin-helix motif KUI_0475 PF04279 Intracellular septation protein A KUI_0480 PF12399 Branched-chain amino acid ATP-binding cassette transporter KUI_0480 PF00005 ABC transporter KUI_0481 PF00005 ABC transporter KUI_0482 PF00633 Helix-hairpin-helix motif KUI_0482 PF10576 Iron-sulfur binding domain of endonuclease III KUI_0482 PF00730 HhH-GPD superfamily base excision DNA repair protein KUI_0483 PF04060 Putative Fe-S cluster KUI_0484 PF00175 Oxidoreductase NAD-binding domain KUI_0484 PF00970 Oxidoreductase FAD-binding domain KUI_0485 PF00037 4Fe-4S binding domain KUI_0485 PF11953 Domain of unknown function (DUF3470) KUI_0486 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KUI_0486 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KUI_0487 PF02824 TGS domain KUI_0487 PF13291 ACT domain KUI_0487 PF04607 Region found in RelA / SpoT proteins KUI_0488 PF17848 Acetyl-coA carboxylase zinc finger domain KUI_0488 PF01039 Carboxyl transferase domain KUI_0489 PF10150 Ribonuclease E/G family KUI_0489 PF00575 S1 RNA binding domain KUI_0489 PF12111 Polyribonucleotide phosphorylase C terminal KUI_0490 PF01479 S4 domain KUI_0490 PF00849 RNA pseudouridylate synthase KUI_0491 PF13419 Haloacid dehalogenase-like hydrolase KUI_0492 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KUI_0493 PF02545 Maf-like protein KUI_0495 PF01783 Ribosomal L32p protein family KUI_0496 PF02504 Fatty acid synthesis protein KUI_0497 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KUI_0497 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KUI_0498 PF00698 Acyl transferase domain KUI_0500 PF00550 Phosphopantetheine attachment site KUI_0501 PF00109 Beta-ketoacyl synthase, N-terminal domain KUI_0501 PF02801 Beta-ketoacyl synthase, C-terminal domain KUI_0503 PF13180 PDZ domain KUI_0504 PF00679 Elongation factor G C-terminus KUI_0504 PF00009 Elongation factor Tu GTP binding domain KUI_0504 PF03144 Elongation factor Tu domain 2 KUI_0504 PF06421 GTP-binding protein LepA C-terminus KUI_0505 PF10502 Signal peptidase, peptidase S26 KUI_0506 PF00035 Double-stranded RNA binding motif KUI_0506 PF14622 Ribonuclease-III-like KUI_0507 PF01926 50S ribosome-binding GTPase KUI_0507 PF07650 KH domain KUI_0508 PF11967 Recombination protein O N terminal KUI_0508 PF02565 Recombination protein O C terminal KUI_0509 PF01027 Inhibitor of apoptosis-promoting Bax1 KUI_0511 PF02789 Cytosol aminopeptidase family, N-terminal domain KUI_0511 PF00883 Cytosol aminopeptidase family, catalytic domain KUI_0513 PF03466 LysR substrate binding domain KUI_0513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUI_0514 PF13977 BetI-type transcriptional repressor, C-terminal KUI_0514 PF00440 Bacterial regulatory proteins, tetR family KUI_0517 PF00877 NlpC/P60 family KUI_0519 PF00557 Metallopeptidase family M24 KUI_0519 PF01321 Creatinase/Prolidase N-terminal domain KUI_0521 PF00471 Ribosomal protein L33 KUI_0522 PF00830 Ribosomal L28 family KUI_0523 PF01554 MatE KUI_0525 PF01197 Ribosomal protein L31 KUI_0526 PF04002 RadC-like JAB domain KUI_0527 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUI_0528 PF02401 LytB protein KUI_0529 PF02545 Maf-like protein KUI_0530 PF02590 Predicted SPOUT methyltransferase KUI_0532 PF01467 Cytidylyltransferase-like KUI_0533 PF02844 Phosphoribosylglycinamide synthetase, N domain KUI_0533 PF02843 Phosphoribosylglycinamide synthetase, C domain KUI_0533 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KUI_0534 PF01709 Transcriptional regulator KUI_0535 PF05872 Bacterial protein of unknown function (DUF853) KUI_0536 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KUI_0537 PF01433 Peptidase family M1 domain KUI_0537 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KUI_0537 PF11940 Domain of unknown function (DUF3458) Ig-like fold KUI_0538 PF01523 Putative modulator of DNA gyrase KUI_0540 PF08328 Adenylosuccinate lyase C-terminal KUI_0540 PF00206 Lyase KUI_0541 PF01322 Cytochrome C' KUI_0545 PF01645 Conserved region in glutamate synthase KUI_0547 PF00545 ribonuclease KUI_0551 PF13406 Transglycosylase SLT domain KUI_0552 PF00595 PDZ domain KUI_0552 PF11818 C-terminal domain of tail specific protease (DUF3340) KUI_0552 PF03572 Peptidase family S41 KUI_0552 PF17804 Tail specific protease N-terminal domain KUI_0553 PF04321 RmlD substrate binding domain KUI_0554 PF13419 Haloacid dehalogenase-like hydrolase KUI_0556 PF00691 OmpA family KUI_0557 PF03989 DNA gyrase C-terminal domain, beta-propeller KUI_0557 PF00521 DNA gyrase/topoisomerase IV, subunit A KUI_0558 PF00266 Aminotransferase class-V KUI_0559 PF01842 ACT domain KUI_0559 PF01817 Chorismate mutase type II KUI_0559 PF00800 Prephenate dehydratase KUI_0560 PF01842 ACT domain KUI_0560 PF02153 Prephenate dehydrogenase KUI_0561 PF02224 Cytidylate kinase KUI_0562 PF00575 S1 RNA binding domain KUI_0563 PF00216 Bacterial DNA-binding protein KUI_0565 PF18073 Rubredoxin metal binding domain KUI_0566 PF00294 pfkB family carbohydrate kinase KUI_0567 PF10531 SLBB domain KUI_0568 PF00403 Heavy-metal-associated domain KUI_0570 PF00115 Cytochrome C and Quinol oxidase polypeptide I KUI_0573 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KUI_0573 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KUI_0574 PF12801 4Fe-4S binding domain KUI_0574 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KUI_0574 PF13746 4Fe-4S dicluster domain KUI_0576 PF00027 Cyclic nucleotide-binding domain KUI_0576 PF13545 Crp-like helix-turn-helix domain KUI_0578 PF01430 Hsp33 protein KUI_0580 PF16177 Acetyl-coenzyme A synthetase N-terminus KUI_0580 PF00501 AMP-binding enzyme KUI_0580 PF13193 AMP-binding enzyme C-terminal domain KUI_0582 PF01170 Putative RNA methylase family UPF0020 KUI_0582 PF02926 THUMP domain KUI_0586 PF13603 Leucyl-tRNA synthetase, Domain 2 KUI_0586 PF00133 tRNA synthetases class I (I, L, M and V) KUI_0586 PF09334 tRNA synthetases class I (M) KUI_0586 PF08264 Anticodon-binding domain of tRNA KUI_0587 PF07687 Peptidase dimerisation domain KUI_0587 PF01546 Peptidase family M20/M25/M40 KUI_0588 PF08007 Cupin superfamily protein KUI_0589 PF05190 MutS family domain IV KUI_0589 PF05188 MutS domain II KUI_0589 PF01624 MutS domain I KUI_0589 PF05192 MutS domain III KUI_0589 PF00488 MutS domain V KUI_0590 PF05552 Conserved TM helix KUI_0590 PF00924 Mechanosensitive ion channel KUI_0591 PF00588 SpoU rRNA Methylase family KUI_0592 PF00459 Inositol monophosphatase family KUI_0593 PF02673 Bacitracin resistance protein BacA KUI_0594 PF00149 Calcineurin-like phosphoesterase KUI_0595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KUI_0597 PF09190 DALR domain KUI_0597 PF01406 tRNA synthetases class I (C) catalytic domain KUI_0598 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KUI_0599 PF09179 TilS substrate binding domain KUI_0599 PF01171 PP-loop family KUI_0602 PF16868 NMT1-like family KUI_0606 PF06472 ABC transporter transmembrane region 2 KUI_0606 PF00005 ABC transporter KUI_0607 PF07715 TonB-dependent Receptor Plug Domain KUI_0607 PF00593 TonB dependent receptor KUI_0608 PF13840 ACT domain KUI_0608 PF00696 Amino acid kinase family KUI_0608 PF01842 ACT domain KUI_0610 PF04461 Protein of unknown function (DUF520) KUI_0611 PF09285 Elongation factor P, C-terminal KUI_0611 PF08207 Elongation factor P (EF-P) KOW-like domain KUI_0611 PF01132 Elongation factor P (EF-P) OB domain KUI_0613 PF00155 Aminotransferase class I and II KUI_0614 PF00330 Aconitase family (aconitate hydratase) KUI_0614 PF06434 Aconitate hydratase 2 N-terminus KUI_0614 PF11791 Aconitate B N-terminal domain KUI_0617 PF00579 tRNA synthetases class I (W and Y) KUI_0618 PF01427 D-ala-D-ala dipeptidase KUI_0619 PF01569 PAP2 superfamily KUI_0621 PF13667 ThiC-associated domain KUI_0621 PF01964 Radical SAM ThiC family KUI_0623 PF07498 Rho termination factor, N-terminal domain KUI_0623 PF07497 Rho termination factor, RNA-binding domain KUI_0623 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUI_0624 PF00085 Thioredoxin KUI_0625 PF00204 DNA gyrase B KUI_0625 PF00986 DNA gyrase B subunit, carboxyl terminus KUI_0625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_0625 PF01751 Toprim domain KUI_0626 PF00521 DNA gyrase/topoisomerase IV, subunit A KUI_0627 PF00175 Oxidoreductase NAD-binding domain KUI_0627 PF00111 2Fe-2S iron-sulfur cluster binding domain KUI_0627 PF00970 Oxidoreductase FAD-binding domain KUI_0629 PF02272 DHHA1 domain KUI_0629 PF01411 tRNA synthetases class II (A) KUI_0629 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KUI_0630 PF01206 Sulfurtransferase TusA KUI_0631 PF00886 Ribosomal protein S16 KUI_0632 PF01782 RimM N-terminal domain KUI_0633 PF01746 tRNA (Guanine-1)-methyltransferase KUI_0634 PF01451 Low molecular weight phosphotyrosine protein phosphatase KUI_0635 PF02082 Transcriptional regulator KUI_0636 PF00266 Aminotransferase class-V KUI_0637 PF01592 NifU-like N terminal domain KUI_0638 PF01521 Iron-sulphur cluster biosynthesis KUI_0639 PF07743 HSCB C-terminal oligomerisation domain KUI_0640 PF00012 Hsp70 protein KUI_0641 PF00111 2Fe-2S iron-sulfur cluster binding domain KUI_0646 PF00152 tRNA synthetases class II (D, K and N) KUI_0646 PF01336 OB-fold nucleic acid binding domain KUI_0647 PF03462 PCRF domain KUI_0647 PF00472 RF-1 domain KUI_0648 PF01368 DHH family KUI_0648 PF17768 RecJ OB domain KUI_0648 PF02272 DHHA1 domain KUI_0650 PF12704 MacB-like periplasmic core domain KUI_0650 PF02687 FtsX-like permease family KUI_0651 PF00005 ABC transporter KUI_0652 PF01494 FAD binding domain KUI_0653 PF01026 TatD related DNase KUI_0654 PF00753 Metallo-beta-lactamase superfamily KUI_0654 PF03772 Competence protein KUI_0655 PF02811 PHP domain KUI_0656 PF01272 Transcription elongation factor, GreA/GreB, C-term KUI_0656 PF03449 Transcription elongation factor, N-terminal KUI_0657 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KUI_0658 PF13145 PPIC-type PPIASE domain KUI_0659 PF01632 Ribosomal protein L35 KUI_0660 PF00453 Ribosomal protein L20 KUI_0661 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KUI_0661 PF01409 tRNA synthetases class II core domain (F) KUI_0662 PF03484 tRNA synthetase B5 domain KUI_0662 PF03147 Ferredoxin-fold anticodon binding domain KUI_0662 PF01588 Putative tRNA binding domain KUI_0662 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KUI_0662 PF03483 B3/4 domain KUI_0663 PF00216 Bacterial DNA-binding protein KUI_0665 PF01177 Asp/Glu/Hydantoin racemase KUI_0666 PF01070 FMN-dependent dehydrogenase KUI_0667 PF00291 Pyridoxal-phosphate dependent enzyme KUI_0669 PF13361 UvrD-like helicase C-terminal domain KUI_0669 PF00580 UvrD/REP helicase N-terminal domain KUI_0669 PF12462 DNA helicase IV / RNA helicase N terminal KUI_0671 PF09424 Yqey-like protein KUI_0673 PF00768 D-alanyl-D-alanine carboxypeptidase KUI_0674 PF02769 AIR synthase related protein, C-terminal domain KUI_0674 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KUI_0674 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KUI_0675 PF00571 CBS domain KUI_0675 PF00478 IMP dehydrogenase / GMP reductase domain KUI_0677 PF00117 Glutamine amidotransferase class-I KUI_0677 PF02540 NAD synthase KUI_0677 PF00958 GMP synthase C terminal domain KUI_0685 PF00474 Sodium:solute symporter family KUI_0686 PF03806 AbgT putative transporter family KUI_0687 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUI_0689 PF07690 Major Facilitator Superfamily KUI_0691 PF00005 ABC transporter KUI_0691 PF12857 TOBE-like domain KUI_0697 PF00664 ABC transporter transmembrane region KUI_0697 PF00005 ABC transporter KUI_0698 PF00005 ABC transporter KUI_0698 PF00664 ABC transporter transmembrane region KUI_0699 PF03616 Sodium/glutamate symporter KUI_0702 PF01515 Phosphate acetyl/butaryl transferase KUI_0702 PF03949 Malic enzyme, NAD binding domain KUI_0702 PF00390 Malic enzyme, N-terminal domain KUI_0703 PF16870 2-oxoglutarate dehydrogenase C-terminal KUI_0703 PF00676 Dehydrogenase E1 component KUI_0703 PF02779 Transketolase, pyrimidine binding domain KUI_0703 PF16078 2-oxoglutarate dehydrogenase N-terminus KUI_0704 PF02817 e3 binding domain KUI_0704 PF00364 Biotin-requiring enzyme KUI_0704 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUI_0705 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUI_0705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUI_0706 PF03969 AFG1-like ATPase KUI_0707 PF13335 Magnesium chelatase, subunit ChlI C-terminal KUI_0707 PF01078 Magnesium chelatase, subunit ChlI KUI_0708 PF03180 NLPA lipoprotein KUI_0710 PF13291 ACT domain KUI_0710 PF02824 TGS domain KUI_0710 PF04607 Region found in RelA / SpoT proteins KUI_0711 PF01192 RNA polymerase Rpb6 KUI_0712 PF00625 Guanylate kinase KUI_0713 PF13638 PIN domain KUI_0713 PF02562 PhoH-like protein KUI_0714 PF00578 AhpC/TSA family KUI_0715 PF04430 Protein of unknown function (DUF498/DUF598) KUI_0716 PF03447 Homoserine dehydrogenase, NAD binding domain KUI_0716 PF00742 Homoserine dehydrogenase KUI_0716 PF01842 ACT domain KUI_0717 PF14821 Threonine synthase N terminus KUI_0717 PF00291 Pyridoxal-phosphate dependent enzyme KUI_0719 PF00842 Alanine racemase, C-terminal domain KUI_0719 PF01168 Alanine racemase, N-terminal domain KUI_0720 PF18073 Rubredoxin metal binding domain KUI_0721 PF13416 Bacterial extracellular solute-binding protein KUI_0722 PF08402 TOBE domain KUI_0722 PF00005 ABC transporter KUI_0723 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0724 PF00528 Binding-protein-dependent transport system inner membrane component KUI_0725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KUI_0726 PF01895 PhoU domain KUI_0727 PF04362 Bacterial Fe(2+) trafficking KUI_0728 PF00271 Helicase conserved C-terminal domain KUI_0728 PF04408 Helicase associated domain (HA2) KUI_0728 PF11898 Domain of unknown function (DUF3418) KUI_0728 PF00270 DEAD/DEAH box helicase KUI_0728 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KUI_0729 PF07733 Bacterial DNA polymerase III alpha NTPase domain KUI_0729 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KUI_0729 PF02811 PHP domain KUI_0729 PF01336 OB-fold nucleic acid binding domain KUI_0729 PF14579 Helix-hairpin-helix motif KUI_0731 PF00664 ABC transporter transmembrane region KUI_0731 PF00005 ABC transporter KUI_0732 PF00575 S1 RNA binding domain KUI_0732 PF10150 Ribonuclease E/G family KUI_0733 PF01227 GTP cyclohydrolase I KUI_0739 PF00565 Staphylococcal nuclease homologue KUI_0740 PF00881 Nitroreductase family KUI_0741 PF03544 Gram-negative bacterial TonB protein C-terminal KUI_0742 PF01618 MotA/TolQ/ExbB proton channel family KUI_0743 PF02472 Biopolymer transport protein ExbD/TolR KUI_0745 PF04305 Protein of unknown function (DUF455) KUI_0746 PF00005 ABC transporter KUI_0746 PF06472 ABC transporter transmembrane region 2 KUI_0747 PF13673 Acetyltransferase (GNAT) domain KUI_0749 PF01925 Sulfite exporter TauE/SafE KUI_0750 PF00773 RNB domain KUI_0750 PF17876 Cold shock domain KUI_0750 PF00575 S1 RNA binding domain KUI_0750 PF08206 Ribonuclease B OB domain KUI_0750 PF08461 Ribonuclease R winged-helix domain KUI_0751 PF08032 RNA 2'-O ribose methyltransferase substrate binding KUI_0751 PF00588 SpoU rRNA Methylase family KUI_0752 PF01053 Cys/Met metabolism PLP-dependent enzyme KUI_0753 PF00216 Bacterial DNA-binding protein KUI_0754 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUI_0755 PF00005 ABC transporter KUI_0757 PF02321 Outer membrane efflux protein KUI_0759 PF00764 Arginosuccinate synthase KUI_0760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KUI_0760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KUI_0762 PF01649 Ribosomal protein S20 KUI_0763 PF03023 Lipid II flippase MurJ KUI_0764 PF05191 Adenylate kinase, active site lid KUI_0765 PF02348 Cytidylyltransferase KUI_0766 PF03966 Trm112p-like protein KUI_0767 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KUI_0768 PF13742 OB-fold nucleic acid binding domain KUI_0768 PF02601 Exonuclease VII, large subunit KUI_0769 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KUI_0769 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KUI_0770 PF13458 Periplasmic binding protein KUI_0771 PF14748 Pyrroline-5-carboxylate reductase dimerisation KUI_0771 PF03807 NADP oxidoreductase coenzyme F420-dependent KUI_0772 PF02653 Branched-chain amino acid transport system / permease component KUI_0773 PF11862 Domain of unknown function (DUF3382) KUI_0773 PF02653 Branched-chain amino acid transport system / permease component KUI_0774 PF00005 ABC transporter KUI_0774 PF12399 Branched-chain amino acid ATP-binding cassette transporter KUI_0775 PF00005 ABC transporter KUI_0776 PF02630 SCO1/SenC KUI_0777 PF01432 Peptidase family M3 KUI_0778 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KUI_0778 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KUI_0779 PF00196 Bacterial regulatory proteins, luxR family KUI_0779 PF00072 Response regulator receiver domain KUI_0780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_0780 PF00989 PAS fold KUI_0780 PF00512 His Kinase A (phospho-acceptor) domain KUI_0781 PF17831 Pyruvate dehydrogenase E1 component middle domain KUI_0781 PF00456 Transketolase, thiamine diphosphate binding domain KUI_0782 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUI_0782 PF00364 Biotin-requiring enzyme KUI_0782 PF02817 e3 binding domain KUI_0783 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUI_0783 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUI_0784 PF01292 Prokaryotic cytochrome b561 KUI_0785 PF08245 Mur ligase middle domain KUI_0785 PF02875 Mur ligase family, glutamate ligase domain KUI_0787 PF02674 Colicin V production protein KUI_0788 PF00156 Phosphoribosyl transferase domain KUI_0789 PF02423 Ornithine cyclodeaminase/mu-crystallin family KUI_0791 PF01914 MarC family integral membrane protein KUI_0792 PF08335 GlnD PII-uridylyltransferase KUI_0792 PF01966 HD domain KUI_0792 PF01909 Nucleotidyltransferase domain KUI_0793 PF00557 Metallopeptidase family M24 KUI_0794 PF00318 Ribosomal protein S2 KUI_0795 PF00889 Elongation factor TS KUI_0796 PF00696 Amino acid kinase family KUI_0797 PF01765 Ribosome recycling factor KUI_0798 PF01255 Putative undecaprenyl diphosphate synthase KUI_0800 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KUI_0800 PF13288 DXP reductoisomerase C-terminal domain KUI_0800 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KUI_0801 PF02163 Peptidase family M50 KUI_0801 PF17820 PDZ domain KUI_0802 PF07244 Surface antigen variable number repeat KUI_0802 PF01103 Surface antigen KUI_0803 PF03938 Outer membrane protein (OmpH-like) KUI_0804 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_0804 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KUI_0804 PF14602 Hexapeptide repeat of succinyl-transferase KUI_0805 PF07977 FabA-like domain KUI_0806 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KUI_0806 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_0807 PF02684 Lipid-A-disaccharide synthetase KUI_0808 PF01351 Ribonuclease HII KUI_0810 PF00588 SpoU rRNA Methylase family KUI_0810 PF08032 RNA 2'-O ribose methyltransferase substrate binding KUI_0811 PF03618 Kinase/pyrophosphorylase KUI_0812 PF00391 PEP-utilising enzyme, mobile domain KUI_0812 PF02896 PEP-utilising enzyme, TIM barrel domain KUI_0812 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KUI_0814 PF01145 SPFH domain / Band 7 family KUI_0815 PF01668 SmpB protein KUI_0816 PF03364 Polyketide cyclase / dehydrase and lipid transport KUI_0817 PF03658 RnfH family Ubiquitin KUI_0818 PF01571 Aminomethyltransferase folate-binding domain KUI_0819 PF02618 YceG-like family KUI_0820 PF02223 Thymidylate kinase KUI_0821 PF09115 DNA polymerase III, delta subunit, C terminal KUI_0822 PF01026 TatD related DNase KUI_0825 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KUI_0826 PF01899 Na+/H+ ion antiporter subunit KUI_0827 PF00361 Proton-conducting membrane transporter KUI_0828 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KUI_0829 PF13244 Domain of unknown function (DUF4040) KUI_0829 PF00361 Proton-conducting membrane transporter KUI_0829 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KUI_0829 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KUI_0831 PF00529 HlyD membrane-fusion protein of T1SS KUI_0831 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUI_0832 PF00873 AcrB/AcrD/AcrF family KUI_0833 PF02321 Outer membrane efflux protein KUI_0834 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KUI_0835 PF00881 Nitroreductase family KUI_0836 PF00171 Aldehyde dehydrogenase family KUI_0838 PF00873 AcrB/AcrD/AcrF family KUI_0839 PF00873 AcrB/AcrD/AcrF family KUI_0840 PF13533 Biotin-lipoyl like KUI_0841 PF00892 EamA-like transporter family KUI_0843 PF03401 Tripartite tricarboxylate transporter family receptor KUI_0845 PF03372 Endonuclease/Exonuclease/phosphatase family KUI_0847 PF01479 S4 domain KUI_0847 PF00849 RNA pseudouridylate synthase KUI_0848 PF00543 Nitrogen regulatory protein P-II KUI_0849 PF00795 Carbon-nitrogen hydrolase KUI_0849 PF02540 NAD synthase KUI_0850 PF00206 Lyase KUI_0850 PF14698 Argininosuccinate lyase C-terminal KUI_0851 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KUI_0852 PF02631 RecX family KUI_0853 PF00154 recA bacterial DNA recombination protein KUI_0854 PF04381 Putative exonuclease, RdgC KUI_0856 PF02151 UvrB/uvrC motif KUI_0856 PF17757 UvrB interaction domain KUI_0856 PF12344 Ultra-violet resistance protein B KUI_0856 PF04851 Type III restriction enzyme, res subunit KUI_0856 PF00271 Helicase conserved C-terminal domain KUI_0857 PF00155 Aminotransferase class I and II KUI_0858 PF01726 LexA DNA binding domain KUI_0858 PF00717 Peptidase S24-like KUI_0860 PF16868 NMT1-like family KUI_0862 PF01594 AI-2E family transporter KUI_0867 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KUI_0867 PF14602 Hexapeptide repeat of succinyl-transferase KUI_0867 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_0868 PF01546 Peptidase family M20/M25/M40 KUI_0868 PF07687 Peptidase dimerisation domain KUI_0869 PF05175 Methyltransferase small domain KUI_0871 PF00005 ABC transporter KUI_0872 PF02653 Branched-chain amino acid transport system / permease component KUI_0874 PF01416 tRNA pseudouridine synthase KUI_0875 PF02774 Semialdehyde dehydrogenase, dimerisation domain KUI_0875 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUI_0876 PF00180 Isocitrate/isopropylmalate dehydrogenase KUI_0877 PF00694 Aconitase C-terminal domain KUI_0878 PF00330 Aconitase family (aconitate hydratase) KUI_0880 PF03631 Virulence factor BrkB KUI_0881 PF00268 Ribonucleotide reductase, small chain KUI_0882 PF03477 ATP cone domain KUI_0882 PF02867 Ribonucleotide reductase, barrel domain KUI_0882 PF00317 Ribonucleotide reductase, all-alpha domain KUI_0883 PF01207 Dihydrouridine synthase (Dus) KUI_0884 PF00654 Voltage gated chloride channel KUI_0885 PF01636 Phosphotransferase enzyme family KUI_0887 PF00766 Electron transfer flavoprotein FAD-binding domain KUI_0887 PF01012 Electron transfer flavoprotein domain KUI_0888 PF01012 Electron transfer flavoprotein domain KUI_0889 PF01066 CDP-alcohol phosphatidyltransferase KUI_0890 PF08459 UvrC Helix-hairpin-helix N-terminal KUI_0890 PF02151 UvrB/uvrC motif KUI_0890 PF01541 GIY-YIG catalytic domain KUI_0891 PF00933 Glycosyl hydrolase family 3 N terminal domain KUI_0892 PF01648 4'-phosphopantetheinyl transferase superfamily KUI_0893 PF00929 Exonuclease KUI_0894 PF03193 RsgA GTPase KUI_0895 PF01245 Ribosomal protein L19 KUI_0900 PF00437 Type II/IV secretion system protein KUI_0901 PF04972 BON domain KUI_0901 PF00263 Bacterial type II and III secretion system protein KUI_0901 PF13629 Pilus formation protein N terminal region KUI_0907 PF03167 Uracil DNA glycosylase superfamily KUI_0910 PF04546 Sigma-70, non-essential region KUI_0910 PF04539 Sigma-70 region 3 KUI_0910 PF04545 Sigma-70, region 4 KUI_0910 PF03979 Sigma-70 factor, region 1.1 KUI_0910 PF00140 Sigma-70 factor, region 1.2 KUI_0910 PF04542 Sigma-70 region 2 KUI_0911 PF01807 CHC2 zinc finger KUI_0911 PF08275 DNA primase catalytic core, N-terminal domain KUI_0911 PF10410 DnaB-helicase binding domain of primase KUI_0911 PF08278 DNA primase DnaG DnaB-binding KUI_0912 PF01165 Ribosomal protein S21 KUI_0914 PF00709 Adenylosuccinate synthetase KUI_0915 PF01145 SPFH domain / Band 7 family KUI_0916 PF01145 SPFH domain / Band 7 family KUI_0917 PF13167 GTP-binding GTPase N-terminal KUI_0917 PF16360 GTP-binding GTPase Middle Region KUI_0917 PF01926 50S ribosome-binding GTPase KUI_0918 PF17209 Hfq protein KUI_0919 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KUI_0919 PF01926 50S ribosome-binding GTPase KUI_0920 PF13360 PQQ-like domain KUI_0921 PF09976 Tetratricopeptide repeat-like domain KUI_0922 PF03129 Anticodon binding domain KUI_0922 PF13393 Histidyl-tRNA synthetase KUI_0923 PF04551 GcpE protein KUI_0925 PF04055 Radical SAM superfamily KUI_0926 PF00334 Nucleoside diphosphate kinase KUI_0927 PF08264 Anticodon-binding domain of tRNA KUI_0927 PF00133 tRNA synthetases class I (I, L, M and V) KUI_0927 PF10458 Valyl tRNA synthetase tRNA binding arm KUI_0929 PF00719 Inorganic pyrophosphatase KUI_0933 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KUI_0933 PF03900 Porphobilinogen deaminase, C-terminal domain KUI_0934 PF03741 Integral membrane protein TerC family KUI_0935 PF02629 CoA binding domain KUI_0935 PF00549 CoA-ligase KUI_0936 PF08442 ATP-grasp domain KUI_0936 PF00549 CoA-ligase KUI_0940 PF05958 tRNA (Uracil-5-)-methyltransferase KUI_0942 PF01551 Peptidase family M23 KUI_0942 PF01476 LysM domain KUI_0944 PF01975 Survival protein SurE KUI_0945 PF02660 Glycerol-3-phosphate acyltransferase KUI_0946 PF00814 Glycoprotease family KUI_0947 PF00860 Permease family KUI_0948 PF01205 Uncharacterized protein family UPF0029 KUI_0949 PF00005 ABC transporter KUI_0949 PF12848 ABC transporter KUI_0950 PF17676 LD-carboxypeptidase C-terminal domain KUI_0950 PF02016 LD-carboxypeptidase N-terminal domain KUI_0951 PF14437 MafB19-like deaminase KUI_0952 PF00145 C-5 cytosine-specific DNA methylase KUI_0954 PF00145 C-5 cytosine-specific DNA methylase KUI_0955 PF05726 Pirin C-terminal cupin domain KUI_0955 PF02678 Pirin KUI_0957 PF00593 TonB dependent receptor KUI_0957 PF07715 TonB-dependent Receptor Plug Domain KUI_0958 PF00842 Alanine racemase, C-terminal domain KUI_0958 PF01168 Alanine racemase, N-terminal domain KUI_0963 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUI_0963 PF07683 Cobalamin synthesis protein cobW C-terminal domain KUI_0965 PF01522 Polysaccharide deacetylase KUI_0966 PF00005 ABC transporter KUI_0966 PF08402 TOBE domain KUI_0968 PF01547 Bacterial extracellular solute-binding protein KUI_0972 PF00285 Citrate synthase, C-terminal domain KUI_0973 PF03937 Flavinator of succinate dehydrogenase KUI_0974 PF13085 2Fe-2S iron-sulfur cluster binding domain KUI_0975 PF02910 Fumarate reductase flavoprotein C-term KUI_0975 PF00890 FAD binding domain KUI_0977 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KUI_0978 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KUI_0978 PF00056 lactate/malate dehydrogenase, NAD binding domain KUI_0979 PF00171 Aldehyde dehydrogenase family KUI_0985 PF05593 RHS Repeat KUI_0985 PF03527 RHS protein KUI_0988 PF03527 RHS protein KUI_0988 PF05593 RHS Repeat KUI_0990 PF03527 RHS protein KUI_0990 PF05593 RHS Repeat KUI_0997 PF04717 Type VI secretion system, phage-baseplate injector KUI_0997 PF16671 Actin cross-linking domain KUI_1000 PF04717 Type VI secretion system, phage-baseplate injector KUI_1002 PF04717 Type VI secretion system, phage-baseplate injector KUI_1004 PF04380 Membrane fusogenic activity KUI_1005 PF17871 AAA lid domain KUI_1005 PF00004 ATPase family associated with various cellular activities (AAA) KUI_1005 PF10431 C-terminal, D2-small domain, of ClpB protein KUI_1005 PF07724 AAA domain (Cdc48 subfamily) KUI_1005 PF02861 Clp amino terminal domain, pathogenicity island component KUI_1007 PF04977 Septum formation initiator KUI_1008 PF03952 Enolase, N-terminal domain KUI_1008 PF00113 Enolase, C-terminal TIM barrel domain KUI_1009 PF00793 DAHP synthetase I family KUI_1010 PF00117 Glutamine amidotransferase class-I KUI_1010 PF06418 CTP synthase N-terminus KUI_1012 PF03466 LysR substrate binding domain KUI_1012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUI_1013 PF01266 FAD dependent oxidoreductase KUI_1015 PF00171 Aldehyde dehydrogenase family KUI_1016 PF02423 Ornithine cyclodeaminase/mu-crystallin family KUI_1017 PF00375 Sodium:dicarboxylate symporter family KUI_1018 PF00202 Aminotransferase class-III KUI_1019 PF07063 Domain of unknown function (DUF1338) KUI_1025 PF04325 Protein of unknown function (DUF465) KUI_1027 PF07715 TonB-dependent Receptor Plug Domain KUI_1027 PF00593 TonB dependent receptor KUI_1029 PF01243 Pyridoxamine 5'-phosphate oxidase KUI_1029 PF10615 Protein of unknown function (DUF2470) KUI_1033 PF16198 tRNA pseudouridylate synthase B C-terminal domain KUI_1033 PF01509 TruB family pseudouridylate synthase (N terminal domain) KUI_1034 PF02033 Ribosome-binding factor A KUI_1035 PF04760 Translation initiation factor IF-2, N-terminal region KUI_1035 PF08364 Bacterial translation initiation factor IF-2 associated region KUI_1035 PF11987 Translation-initiation factor 2 KUI_1035 PF00009 Elongation factor Tu GTP binding domain KUI_1036 PF08529 NusA N-terminal domain KUI_1036 PF13184 NusA-like KH domain KUI_1037 PF02576 RimP N-terminal domain KUI_1037 PF17384 RimP C-terminal SH3 domain KUI_1038 PF01479 S4 domain KUI_1038 PF00849 RNA pseudouridylate synthase KUI_1039 PF04079 Segregation and condensation complex subunit ScpB KUI_1041 PF00849 RNA pseudouridylate synthase KUI_1041 PF01479 S4 domain KUI_1042 PF13525 Outer membrane lipoprotein KUI_1043 PF13438 Domain of unknown function (DUF4113) KUI_1043 PF00817 impB/mucB/samB family KUI_1043 PF11798 IMS family HHH motif KUI_1043 PF11799 impB/mucB/samB family C-terminal domain KUI_1044 PF00717 Peptidase S24-like KUI_1045 PF13361 UvrD-like helicase C-terminal domain KUI_1045 PF00580 UvrD/REP helicase N-terminal domain KUI_1046 PF01029 NusB family KUI_1046 PF01189 16S rRNA methyltransferase RsmB/F KUI_1047 PF00551 Formyl transferase KUI_1048 PF01687 Riboflavin kinase KUI_1048 PF06574 FAD synthetase KUI_1049 PF08264 Anticodon-binding domain of tRNA KUI_1049 PF06827 Zinc finger found in FPG and IleRS KUI_1049 PF00133 tRNA synthetases class I (I, L, M and V) KUI_1050 PF01252 Signal peptidase (SPase) II KUI_1051 PF02441 Flavoprotein KUI_1051 PF04127 DNA / pantothenate metabolism flavoprotein KUI_1052 PF09335 SNARE associated Golgi protein KUI_1053 PF00692 dUTPase KUI_1054 PF00593 TonB dependent receptor KUI_1054 PF07715 TonB-dependent Receptor Plug Domain KUI_1055 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B KUI_1055 PF17484 N-Lobe handle Tf-binding protein B KUI_1055 PF17483 C-lobe handle domain of Tf-binding protein B KUI_1057 PF10431 C-terminal, D2-small domain, of ClpB protein KUI_1057 PF00004 ATPase family associated with various cellular activities (AAA) KUI_1057 PF07724 AAA domain (Cdc48 subfamily) KUI_1057 PF17871 AAA lid domain KUI_1057 PF02861 Clp amino terminal domain, pathogenicity island component KUI_1058 PF00313 'Cold-shock' DNA-binding domain KUI_1060 PF03466 LysR substrate binding domain KUI_1060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUI_1061 PF00270 DEAD/DEAH box helicase KUI_1061 PF00271 Helicase conserved C-terminal domain KUI_1061 PF17191 RecG wedge domain KUI_1062 PF01042 Endoribonuclease L-PSP KUI_1063 PF13416 Bacterial extracellular solute-binding protein KUI_1064 PF00528 Binding-protein-dependent transport system inner membrane component KUI_1065 PF00005 ABC transporter KUI_1065 PF08402 TOBE domain KUI_1068 PF04055 Radical SAM superfamily KUI_1068 PF06969 HemN C-terminal domain KUI_1069 PF01725 Ham1 family KUI_1070 PF01138 3' exoribonuclease family, domain 1 KUI_1070 PF03725 3' exoribonuclease family, domain 2 KUI_1071 PF08340 Domain of unknown function (DUF1732) KUI_1071 PF03755 YicC-like family, N-terminal region KUI_1072 PF03796 DnaB-like helicase C terminal domain KUI_1072 PF00772 DnaB-like helicase N terminal domain KUI_1073 PF03948 Ribosomal protein L9, C-terminal domain KUI_1073 PF01281 Ribosomal protein L9, N-terminal domain KUI_1074 PF01084 Ribosomal protein S18 KUI_1076 PF01250 Ribosomal protein S6 KUI_1077 PF02649 Type I GTP cyclohydrolase folE2 KUI_1078 PF02780 Transketolase, C-terminal domain KUI_1078 PF02779 Transketolase, pyrimidine binding domain KUI_1078 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KUI_1079 PF00348 Polyprenyl synthetase KUI_1080 PF02609 Exonuclease VII small subunit KUI_1082 PF01979 Amidohydrolase family KUI_1083 PF00221 Aromatic amino acid lyase KUI_1084 PF17392 Urocanase C-terminal domain KUI_1084 PF01175 Urocanase Rossmann-like domain KUI_1084 PF17391 Urocanase N-terminal domain KUI_1085 PF07702 UTRA domain KUI_1085 PF00392 Bacterial regulatory proteins, gntR family KUI_1086 PF00581 Rhodanese-like domain KUI_1088 PF01435 Peptidase family M48 KUI_1089 PF01612 3'-5' exonuclease KUI_1089 PF00476 DNA polymerase family A KUI_1089 PF01367 5'-3' exonuclease, C-terminal SAM fold KUI_1089 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KUI_1090 PF03641 Possible lysine decarboxylase KUI_1091 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KUI_1091 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KUI_1091 PF06827 Zinc finger found in FPG and IleRS KUI_1093 PF02896 PEP-utilising enzyme, TIM barrel domain KUI_1093 PF00391 PEP-utilising enzyme, mobile domain KUI_1093 PF05524 PEP-utilising enzyme, N-terminal KUI_1094 PF00381 PTS HPr component phosphorylation site KUI_1096 PF05198 Translation initiation factor IF-3, N-terminal domain KUI_1096 PF00707 Translation initiation factor IF-3, C-terminal domain KUI_1097 PF02824 TGS domain KUI_1097 PF03129 Anticodon binding domain KUI_1097 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KUI_1097 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUI_1099 PF00004 ATPase family associated with various cellular activities (AAA) KUI_1099 PF05362 Lon protease (S16) C-terminal proteolytic domain KUI_1099 PF02190 ATP-dependent protease La (LON) substrate-binding domain KUI_1100 PF06689 ClpX C4-type zinc finger KUI_1100 PF10431 C-terminal, D2-small domain, of ClpB protein KUI_1100 PF07724 AAA domain (Cdc48 subfamily) KUI_1101 PF00574 Clp protease KUI_1102 PF05697 Bacterial trigger factor protein (TF) KUI_1102 PF05698 Bacterial trigger factor protein (TF) C-terminus KUI_1102 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUI_1105 PF03710 Glutamate-ammonia ligase adenylyltransferase KUI_1105 PF08335 GlnD PII-uridylyltransferase KUI_1106 PF02677 Epoxyqueuosine reductase QueH KUI_1111 PF01464 Transglycosylase SLT domain KUI_1114 PF03135 CagE, TrbE, VirB family, component of type IV transporter system KUI_1132 PF13362 Toprim domain KUI_1132 PF08401 Domain of unknown function (DUF1738) KUI_1132 PF18818 Metallopeptidase superfamily domain KUI_1135 PF04335 VirB8 protein KUI_1136 PF03524 Conjugal transfer protein KUI_1137 PF03743 Bacterial conjugation TrbI-like protein KUI_1143 PF00437 Type II/IV secretion system protein KUI_1144 PF02534 Type IV secretory system Conjugative DNA transfer KUI_1164 PF13356 Arm DNA-binding domain KUI_1164 PF00589 Phage integrase family KUI_1168 PF04607 Region found in RelA / SpoT proteins KUI_1168 PF02824 TGS domain KUI_1168 PF13291 ACT domain KUI_1170 PF00701 Dihydrodipicolinate synthetase family KUI_1171 PF06804 NlpB/DapX lipoprotein KUI_1177 PF00005 ABC transporter KUI_1177 PF12704 MacB-like periplasmic core domain KUI_1177 PF02687 FtsX-like permease family KUI_1179 PF03781 Sulfatase-modifying factor enzyme 1 KUI_1183 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KUI_1183 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KUI_1184 PF00593 TonB dependent receptor KUI_1184 PF07715 TonB-dependent Receptor Plug Domain KUI_1185 PF00013 KH domain KUI_1185 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KUI_1185 PF00575 S1 RNA binding domain KUI_1185 PF03725 3' exoribonuclease family, domain 2 KUI_1185 PF01138 3' exoribonuclease family, domain 1 KUI_1186 PF00312 Ribosomal protein S15 KUI_1188 PF01235 Sodium:alanine symporter family KUI_1190 PF10369 Small subunit of acetolactate synthase KUI_1191 PF00205 Thiamine pyrophosphate enzyme, central domain KUI_1191 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUI_1191 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUI_1192 PF03883 Peroxide stress protein YaaA KUI_1193 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUI_1193 PF02403 Seryl-tRNA synthetase N-terminal domain KUI_1194 PF00004 ATPase family associated with various cellular activities (AAA) KUI_1194 PF16193 AAA C-terminal domain KUI_1194 PF12002 MgsA AAA+ ATPase C terminal KUI_1195 PF03548 Outer membrane lipoprotein carrier protein LolA KUI_1196 PF01580 FtsK/SpoIIIE family KUI_1196 PF09397 Ftsk gamma domain KUI_1196 PF17854 FtsK alpha domain KUI_1196 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KUI_1197 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUI_1199 PF04284 Protein of unknown function (DUF441) KUI_1201 PF03601 Conserved hypothetical protein 698 KUI_1203 PF03797 Autotransporter beta-domain KUI_1204 PF00226 DnaJ domain KUI_1204 PF01556 DnaJ C terminal domain KUI_1204 PF00684 DnaJ central domain KUI_1205 PF00012 Hsp70 protein KUI_1206 PF01025 GrpE KUI_1207 PF00132 Bacterial transferase hexapeptide (six repeats) KUI_1208 PF00762 Ferrochelatase KUI_1209 PF01628 HrcA protein C terminal domain KUI_1209 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding KUI_1210 PF01513 ATP-NAD kinase KUI_1211 PF02463 RecF/RecN/SMC N terminal domain KUI_1212 PF01113 Dihydrodipicolinate reductase, N-terminus KUI_1212 PF05173 Dihydrodipicolinate reductase, C-terminus KUI_1213 PF04355 SmpA / OmlA family KUI_1214 PF01475 Ferric uptake regulator family KUI_1215 PF01565 FAD binding domain KUI_1215 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KUI_1217 PF01545 Cation efflux family KUI_1219 PF04261 Dyp-type peroxidase family KUI_1221 PF00005 ABC transporter KUI_1222 PF00528 Binding-protein-dependent transport system inner membrane component KUI_1223 PF00528 Binding-protein-dependent transport system inner membrane component KUI_1224 PF12849 PBP superfamily domain KUI_1225 PF02541 Ppx/GppA phosphatase family KUI_1227 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUI_1227 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUI_1227 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUI_1227 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUI_1228 PF00809 Pterin binding enzyme KUI_1229 PF00004 ATPase family associated with various cellular activities (AAA) KUI_1229 PF17862 AAA+ lid domain KUI_1229 PF06480 FtsH Extracellular KUI_1229 PF01434 Peptidase family M41 KUI_1230 PF01728 FtsJ-like methyltransferase KUI_1231 PF01985 CRS1 / YhbY (CRM) domain KUI_1232 PF03449 Transcription elongation factor, N-terminal KUI_1232 PF01272 Transcription elongation factor, GreA/GreB, C-term KUI_1233 PF00860 Permease family KUI_1234 PF00210 Ferritin-like domain KUI_1235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUI_1235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KUI_1235 PF02142 MGS-like domain KUI_1236 PF00117 Glutamine amidotransferase class-I KUI_1236 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KUI_1237 PF13662 Toprim domain KUI_1237 PF02132 RecR protein KUI_1238 PF02575 YbaB/EbfC DNA-binding family KUI_1240 PF12705 PD-(D/E)XK nuclease superfamily KUI_1240 PF13361 UvrD-like helicase C-terminal domain KUI_1240 PF00580 UvrD/REP helicase N-terminal domain KUI_1244 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KUI_1250 PF00589 Phage integrase family KUI_1250 PF02899 Phage integrase, N-terminal SAM-like domain KUI_1251 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KUI_1252 PF11741 AMIN domain KUI_1252 PF01520 N-acetylmuramoyl-L-alanine amidase KUI_1253 PF01119 DNA mismatch repair protein, C-terminal domain KUI_1253 PF08676 MutL C terminal dimerisation domain KUI_1255 PF00586 AIR synthase related protein, N-terminal domain KUI_1255 PF02769 AIR synthase related protein, C-terminal domain KUI_1256 PF08299 Bacterial dnaA protein helix-turn-helix KUI_1256 PF11638 DnaA N-terminal domain KUI_1256 PF00308 Bacterial dnaA protein KUI_1257 PF12627 Probable RNA and SrmB- binding site of polymerase A KUI_1257 PF12626 Polymerase A arginine-rich C-terminus KUI_1257 PF01743 Poly A polymerase head domain KUI_1258 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KUI_1259 PF00483 Nucleotidyl transferase KUI_1260 PF00342 Phosphoglucose isomerase KUI_1261 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KUI_1268 PF01180 Dihydroorotate dehydrogenase KUI_1270 PF00270 DEAD/DEAH box helicase KUI_1270 PF00271 Helicase conserved C-terminal domain KUI_1272 PF01207 Dihydrouridine synthase (Dus) KUI_1273 PF02954 Bacterial regulatory protein, Fis family KUI_1274 PF01808 AICARFT/IMPCHase bienzyme KUI_1274 PF02142 MGS-like domain KUI_1275 PF02075 Crossover junction endodeoxyribonuclease RuvC KUI_1276 PF07499 RuvA, C-terminal domain KUI_1276 PF01330 RuvA N terminal domain KUI_1278 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KUI_1279 PF05491 RuvB C-terminal winged helix domain KUI_1279 PF17864 RuvB AAA lid domain KUI_1279 PF05496 Holliday junction DNA helicase RuvB P-loop domain KUI_1280 PF01266 FAD dependent oxidoreductase KUI_1282 PF05690 Thiazole biosynthesis protein ThiG KUI_1289 PF01266 FAD dependent oxidoreductase KUI_1289 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KUI_1290 PF03448 MgtE intracellular N domain KUI_1290 PF00571 CBS domain KUI_1290 PF01769 Divalent cation transporter KUI_1291 PF07516 SecA Wing and Scaffold domain KUI_1291 PF01043 SecA preprotein cross-linking domain KUI_1291 PF07517 SecA DEAD-like domain KUI_1291 PF02810 SEC-C motif KUI_1292 PF01476 LysM domain KUI_1292 PF08525 Opacity-associated protein A N-terminal motif KUI_1292 PF01551 Peptidase family M23 KUI_1294 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KUI_1295 PF12327 FtsZ family, C-terminal domain KUI_1295 PF00091 Tubulin/FtsZ family, GTPase domain KUI_1296 PF02491 SHS2 domain inserted in FTSA KUI_1297 PF08478 POTRA domain, FtsQ-type KUI_1297 PF03799 Cell division protein FtsQ KUI_1298 PF01820 D-ala D-ala ligase N-terminus KUI_1298 PF07478 D-ala D-ala ligase C-terminus KUI_1299 PF01225 Mur ligase family, catalytic domain KUI_1299 PF08245 Mur ligase middle domain KUI_1299 PF02875 Mur ligase family, glutamate ligase domain KUI_1300 PF03033 Glycosyltransferase family 28 N-terminal domain KUI_1300 PF04101 Glycosyltransferase family 28 C-terminal domain KUI_1301 PF01098 Cell cycle protein KUI_1302 PF08245 Mur ligase middle domain KUI_1302 PF02875 Mur ligase family, glutamate ligase domain KUI_1303 PF00953 Glycosyl transferase family 4 KUI_1304 PF08245 Mur ligase middle domain KUI_1304 PF01225 Mur ligase family, catalytic domain KUI_1304 PF02875 Mur ligase family, glutamate ligase domain KUI_1305 PF03717 Penicillin-binding Protein dimerisation domain KUI_1305 PF00905 Penicillin binding protein transpeptidase domain KUI_1307 PF01795 MraW methylase family KUI_1308 PF02381 MraZ protein, putative antitoxin-like KUI_1309 PF06628 Catalase-related immune-responsive KUI_1309 PF00199 Catalase KUI_1310 PF02091 Glycyl-tRNA synthetase alpha subunit KUI_1311 PF05746 DALR anticodon binding domain KUI_1311 PF02092 Glycyl-tRNA synthetase beta subunit KUI_1315 PF00398 Ribosomal RNA adenine dimethylase KUI_1316 PF00639 PPIC-type PPIASE domain KUI_1316 PF09312 SurA N-terminal domain KUI_1317 PF04453 LPS transport system D KUI_1318 PF01636 Phosphotransferase enzyme family KUI_1319 PF00483 Nucleotidyl transferase KUI_1321 PF00486 Transcriptional regulatory protein, C terminal KUI_1321 PF00072 Response regulator receiver domain KUI_1322 PF00512 His Kinase A (phospho-acceptor) domain KUI_1322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_1322 PF00672 HAMP domain KUI_1323 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KUI_1323 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUI_1324 PF03775 Septum formation inhibitor MinC, C-terminal domain KUI_1324 PF05209 Septum formation inhibitor MinC, N-terminal domain KUI_1325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KUI_1326 PF03776 Septum formation topological specificity factor MinE KUI_1327 PF00005 ABC transporter KUI_1327 PF12848 ABC transporter KUI_1330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KUI_1331 PF17755 UvrA DNA-binding domain KUI_1331 PF17760 UvrA interaction domain KUI_1331 PF00005 ABC transporter KUI_1332 PF00899 ThiF family KUI_1333 PF01243 Pyridoxamine 5'-phosphate oxidase KUI_1333 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KUI_1334 PF03150 Di-haem cytochrome c peroxidase KUI_1334 PF00034 Cytochrome c KUI_1335 PF03481 Putative GTP-binding controlling metal-binding KUI_1335 PF01300 Telomere recombination KUI_1336 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KUI_1336 PF02222 ATP-grasp domain KUI_1337 PF00731 AIR carboxylase KUI_1338 PF01259 SAICAR synthetase KUI_1339 PF01116 Fructose-bisphosphate aldolase class-II KUI_1340 PF00795 Carbon-nitrogen hydrolase KUI_1341 PF00162 Phosphoglycerate kinase KUI_1342 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KUI_1342 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KUI_1343 PF02779 Transketolase, pyrimidine binding domain KUI_1343 PF02780 Transketolase, C-terminal domain KUI_1343 PF00456 Transketolase, thiamine diphosphate binding domain KUI_1344 PF04452 RNA methyltransferase KUI_1347 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KUI_1352 PF02547 Queuosine biosynthesis protein KUI_1354 PF02699 Preprotein translocase subunit KUI_1355 PF07549 SecD/SecF GG Motif KUI_1355 PF13721 SecD export protein N-terminal TM region KUI_1355 PF02355 Protein export membrane protein KUI_1356 PF07549 SecD/SecF GG Motif KUI_1356 PF02355 Protein export membrane protein KUI_1357 PF00919 Uncharacterized protein family UPF0004 KUI_1357 PF04055 Radical SAM superfamily KUI_1357 PF01938 TRAM domain KUI_1358 PF02562 PhoH-like protein KUI_1359 PF02130 Uncharacterized protein family UPF0054 KUI_1360 PF03471 Transporter associated domain KUI_1360 PF00571 CBS domain KUI_1361 PF00795 Carbon-nitrogen hydrolase KUI_1364 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_1364 PF03895 YadA-like membrane anchor domain KUI_1364 PF05658 Head domain of trimeric autotransporter adhesin KUI_1364 PF13018 Extended Signal Peptide of Type V secretion system KUI_1365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUI_1365 PF00005 ABC transporter KUI_1366 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUI_1367 PF00528 Binding-protein-dependent transport system inner membrane component KUI_1368 PF12911 N-terminal TM domain of oligopeptide transport permease C KUI_1368 PF00528 Binding-protein-dependent transport system inner membrane component KUI_1369 PF03576 Peptidase family S58 KUI_1371 PF01112 Asparaginase KUI_1372 PF00075 RNase H KUI_1374 PF00753 Metallo-beta-lactamase superfamily KUI_1374 PF16123 Hydroxyacylglutathione hydrolase C-terminus KUI_1375 PF01464 Transglycosylase SLT domain KUI_1375 PF01476 LysM domain KUI_1376 PF01389 OmpA-like transmembrane domain KUI_1376 PF00691 OmpA family KUI_1378 PF00677 Lumazine binding domain KUI_1379 PF01872 RibD C-terminal domain KUI_1379 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KUI_1380 PF03477 ATP cone domain KUI_1381 PF00464 Serine hydroxymethyltransferase KUI_1382 PF01479 S4 domain KUI_1382 PF00579 tRNA synthetases class I (W and Y) KUI_1383 PF03702 Anhydro-N-acetylmuramic acid kinase KUI_1384 PF01521 Iron-sulphur cluster biosynthesis KUI_1386 PF00380 Ribosomal protein S9/S16 KUI_1387 PF00572 Ribosomal protein L13 KUI_1388 PF01523 Putative modulator of DNA gyrase KUI_1389 PF04751 Protein of unknown function (DUF615) KUI_1390 PF02230 Phospholipase/Carboxylesterase KUI_1391 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUI_1394 PF00294 pfkB family carbohydrate kinase KUI_1397 PF02785 Biotin carboxylase C-terminal domain KUI_1397 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUI_1397 PF00289 Biotin carboxylase, N-terminal domain KUI_1398 PF00364 Biotin-requiring enzyme KUI_1399 PF08245 Mur ligase middle domain KUI_1399 PF02875 Mur ligase family, glutamate ligase domain KUI_1399 PF01225 Mur ligase family, catalytic domain KUI_1400 PF00773 RNB domain KUI_1400 PF08206 Ribonuclease B OB domain KUI_1402 PF00149 Calcineurin-like phosphoesterase KUI_1403 PF01553 Acyltransferase KUI_1404 PF01979 Amidohydrolase family KUI_1405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KUI_1405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KUI_1406 PF03652 Holliday junction resolvase KUI_1407 PF02622 Uncharacterized ACR, COG1678 KUI_1408 PF00301 Rubredoxin KUI_1409 PF02581 Thiamine monophosphate synthase KUI_1410 PF00202 Aminotransferase class-III KUI_1411 PF00270 DEAD/DEAH box helicase KUI_1411 PF00271 Helicase conserved C-terminal domain KUI_1413 PF12627 Probable RNA and SrmB- binding site of polymerase A KUI_1413 PF01743 Poly A polymerase head domain KUI_1417 PF05593 RHS Repeat KUI_1417 PF03527 RHS protein KUI_1419 PF05593 RHS Repeat KUI_1419 PF03527 RHS protein KUI_1423 PF04328 Selenoprotein, putative KUI_1424 PF02554 Carbon starvation protein CstA KUI_1424 PF13722 5TM C-terminal transporter carbon starvation CstA KUI_1427 PF05145 Transition state regulatory protein AbrB KUI_1428 PF01970 Tripartite tricarboxylate transporter TctA family KUI_1431 PF05221 S-adenosyl-L-homocysteine hydrolase KUI_1431 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KUI_1432 PF00438 S-adenosylmethionine synthetase, N-terminal domain KUI_1432 PF02772 S-adenosylmethionine synthetase, central domain KUI_1432 PF02773 S-adenosylmethionine synthetase, C-terminal domain KUI_1433 PF03279 Bacterial lipid A biosynthesis acyltransferase KUI_1434 PF00156 Phosphoribosyl transferase domain KUI_1435 PF03372 Endonuclease/Exonuclease/phosphatase family KUI_1437 PF07690 Major Facilitator Superfamily KUI_1438 PF00561 alpha/beta hydrolase fold KUI_1439 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KUI_1441 PF00375 Sodium:dicarboxylate symporter family KUI_1442 PF01276 Orn/Lys/Arg decarboxylase, major domain KUI_1442 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KUI_1442 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KUI_1444 PF00005 ABC transporter KUI_1446 PF00245 Alkaline phosphatase KUI_1447 PF00072 Response regulator receiver domain KUI_1447 PF00196 Bacterial regulatory proteins, luxR family KUI_1448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUI_1448 PF00512 His Kinase A (phospho-acceptor) domain KUI_1449 PF00034 Cytochrome c KUI_1449 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KUI_1451 PF03150 Di-haem cytochrome c peroxidase KUI_1462 PF04386 Stringent starvation protein B KUI_1463 PF02798 Glutathione S-transferase, N-terminal domain KUI_1463 PF00043 Glutathione S-transferase, C-terminal domain KUI_1464 PF02167 Cytochrome C1 family KUI_1465 PF00032 Cytochrome b(C-terminal)/b6/petD KUI_1465 PF00033 Cytochrome b/b6/petB KUI_1466 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KUI_1466 PF00355 Rieske [2Fe-2S] domain KUI_1467 PF01741 Large-conductance mechanosensitive channel, MscL KUI_1468 PF01784 NIF3 (NGG1p interacting factor 3) KUI_1469 PF00595 PDZ domain KUI_1470 PF00902 Sec-independent protein translocase protein (TatC) KUI_1471 PF02416 mttA/Hcf106 family KUI_1472 PF02416 mttA/Hcf106 family KUI_1473 PF00977 Histidine biosynthesis protein KUI_1474 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KUI_1476 PF01061 ABC-2 type transporter KUI_1477 PF00005 ABC transporter KUI_1479 PF04333 MlaA lipoprotein KUI_1480 PF02470 MlaD protein KUI_1481 PF02405 Permease MlaE KUI_1482 PF00005 ABC transporter KUI_1483 PF18255 DNA processing protein A sterile alpha motif domain KUI_1483 PF02481 DNA recombination-mediator protein A KUI_1484 PF01327 Polypeptide deformylase KUI_1485 PF01168 Alanine racemase, N-terminal domain KUI_1486 PF00571 CBS domain KUI_1486 PF01595 Cyclin M transmembrane N-terminal domain KUI_1486 PF03471 Transporter associated domain KUI_1487 PF01380 SIS domain KUI_1488 PF01641 SelR domain KUI_1488 PF08534 Redoxin KUI_1488 PF01625 Peptide methionine sulfoxide reductase KUI_1490 PF00436 Single-strand binding protein family KUI_1491 PF00436 Single-strand binding protein family KUI_1492 PF07690 Major Facilitator Superfamily KUI_1493 PF17755 UvrA DNA-binding domain KUI_1493 PF17760 UvrA interaction domain KUI_1494 PF00593 TonB dependent receptor KUI_1494 PF07715 TonB-dependent Receptor Plug Domain KUI_1495 PF13286 Phosphohydrolase-associated domain KUI_1495 PF01966 HD domain KUI_1496 PF17092 Penicillin-binding protein OB-like domain KUI_1496 PF00912 Transglycosylase KUI_1496 PF00905 Penicillin binding protein transpeptidase domain KUI_1497 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KUI_1497 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KUI_1499 PF01578 Cytochrome C assembly protein KUI_1500 PF05140 ResB-like family KUI_1502 PF01926 50S ribosome-binding GTPase KUI_1504 PF00490 Delta-aminolevulinic acid dehydratase KUI_1505 PF02683 Cytochrome C biogenesis protein transmembrane region KUI_1505 PF11412 Disulphide bond corrector protein DsbC KUI_1507 PF03616 Sodium/glutamate symporter KUI_1508 PF00491 Arginase family KUI_1511 PF01196 Ribosomal protein L17 KUI_1512 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KUI_1512 PF01000 RNA polymerase Rpb3/RpoA insert domain KUI_1512 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KUI_1513 PF01479 S4 domain KUI_1513 PF00163 Ribosomal protein S4/S9 N-terminal domain KUI_1514 PF00411 Ribosomal protein S11 KUI_1515 PF00416 Ribosomal protein S13/S18 KUI_1516 PF01176 Translation initiation factor 1A / IF-1 KUI_1517 PF00344 SecY translocase KUI_1518 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KUI_1519 PF00327 Ribosomal protein L30p/L7e KUI_1520 PF03719 Ribosomal protein S5, C-terminal domain KUI_1520 PF00333 Ribosomal protein S5, N-terminal domain KUI_1521 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KUI_1522 PF00347 Ribosomal protein L6 KUI_1523 PF00410 Ribosomal protein S8 KUI_1524 PF00253 Ribosomal protein S14p/S29e KUI_1525 PF00673 ribosomal L5P family C-terminus KUI_1525 PF00281 Ribosomal protein L5 KUI_1526 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KUI_1527 PF00238 Ribosomal protein L14p/L23e KUI_1528 PF03553 Na+/H+ antiporter family KUI_1528 PF13726 Na+-H+ antiporter family KUI_1529 PF13726 Na+-H+ antiporter family KUI_1529 PF03553 Na+/H+ antiporter family KUI_1530 PF07732 Multicopper oxidase KUI_1530 PF00394 Multicopper oxidase KUI_1531 PF02630 SCO1/SenC KUI_1533 PF00403 Heavy-metal-associated domain KUI_1535 PF01970 Tripartite tricarboxylate transporter TctA family KUI_1537 PF00043 Glutathione S-transferase, C-terminal domain KUI_1537 PF02798 Glutathione S-transferase, N-terminal domain KUI_1539 PF13173 AAA domain KUI_1539 PF13635 Domain of unknown function (DUF4143) KUI_1541 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_1541 PF03895 YadA-like membrane anchor domain KUI_1541 PF05658 Head domain of trimeric autotransporter adhesin KUI_1542 PF13018 Extended Signal Peptide of Type V secretion system KUI_1542 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_1542 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin KUI_1542 PF03895 YadA-like membrane anchor domain KUI_1543 PF03895 YadA-like membrane anchor domain KUI_1543 PF13018 Extended Signal Peptide of Type V secretion system KUI_1543 PF13018 Extended Signal Peptide of Type V secretion system KUI_1543 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_1543 PF05658 Head domain of trimeric autotransporter adhesin KUI_1543 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_1543 PF05658 Head domain of trimeric autotransporter adhesin KUI_1543 PF03895 YadA-like membrane anchor domain KUI_1544 PF03895 YadA-like membrane anchor domain KUI_1544 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin KUI_1544 PF05662 Coiled stalk of trimeric autotransporter adhesin KUI_1544 PF13018 Extended Signal Peptide of Type V secretion system KUI_1545 PF00366 Ribosomal protein S17 KUI_1546 PF00831 Ribosomal L29 protein KUI_1547 PF00252 Ribosomal protein L16p/L10e KUI_1548 PF00189 Ribosomal protein S3, C-terminal domain KUI_1548 PF07650 KH domain KUI_1549 PF00237 Ribosomal protein L22p/L17e KUI_1550 PF00203 Ribosomal protein S19 KUI_1551 PF00181 Ribosomal Proteins L2, RNA binding domain KUI_1551 PF03947 Ribosomal Proteins L2, C-terminal domain KUI_1552 PF00276 Ribosomal protein L23 KUI_1553 PF00573 Ribosomal protein L4/L1 family KUI_1554 PF00297 Ribosomal protein L3 KUI_1555 PF02646 RmuC family KUI_1556 PF03180 NLPA lipoprotein KUI_1557 PF00528 Binding-protein-dependent transport system inner membrane component KUI_1558 PF00005 ABC transporter KUI_1558 PF09383 NIL domain KUI_1562 PF00338 Ribosomal protein S10p/S20e KUI_1563 PF00664 ABC transporter transmembrane region KUI_1563 PF00005 ABC transporter KUI_1565 PF03143 Elongation factor Tu C-terminal domain KUI_1565 PF00009 Elongation factor Tu GTP binding domain KUI_1565 PF03144 Elongation factor Tu domain 2 KUI_1566 PF03764 Elongation factor G, domain IV KUI_1566 PF00009 Elongation factor Tu GTP binding domain KUI_1566 PF03144 Elongation factor Tu domain 2 KUI_1566 PF00679 Elongation factor G C-terminus KUI_1566 PF14492 Elongation Factor G, domain II KUI_1567 PF00177 Ribosomal protein S7p/S5e KUI_1568 PF00164 Ribosomal protein S12/S23 KUI_1572 PF03328 HpcH/HpaI aldolase/citrate lyase family KUI_1573 PF02515 CoA-transferase family III KUI_1575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUI_1575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUI_1575 PF02770 Acyl-CoA dehydrogenase, middle domain KUI_1579 PF01555 DNA methylase KUI_1580 PF06945 Protein of unknown function (DUF1289) KUI_1581 PF00696 Amino acid kinase family KUI_1582 PF00202 Aminotransferase class-III KUI_1583 PF02774 Semialdehyde dehydrogenase, dimerisation domain KUI_1583 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUI_1586 PF00491 Arginase family KUI_1587 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUI_1587 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUI_1588 PF00623 RNA polymerase Rpb1, domain 2 KUI_1588 PF04997 RNA polymerase Rpb1, domain 1 KUI_1588 PF04983 RNA polymerase Rpb1, domain 3 KUI_1588 PF05000 RNA polymerase Rpb1, domain 4 KUI_1588 PF04998 RNA polymerase Rpb1, domain 5 KUI_1589 PF04565 RNA polymerase Rpb2, domain 3 KUI_1589 PF04563 RNA polymerase beta subunit KUI_1589 PF10385 RNA polymerase beta subunit external 1 domain KUI_1589 PF00562 RNA polymerase Rpb2, domain 6 KUI_1589 PF04560 RNA polymerase Rpb2, domain 7 KUI_1589 PF04561 RNA polymerase Rpb2, domain 2 KUI_1590 PF16320 Ribosomal protein L7/L12 dimerisation domain KUI_1590 PF00542 Ribosomal protein L7/L12 C-terminal domain KUI_1591 PF00466 Ribosomal protein L10 KUI_1592 PF00687 Ribosomal protein L1p/L10e family KUI_1593 PF03946 Ribosomal protein L11, N-terminal domain KUI_1593 PF00298 Ribosomal protein L11, RNA binding domain KUI_1594 PF00467 KOW motif KUI_1594 PF02357 Transcription termination factor nusG KUI_1595 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KUI_1597 PF03143 Elongation factor Tu C-terminal domain KUI_1597 PF03144 Elongation factor Tu domain 2 KUI_1597 PF00009 Elongation factor Tu GTP binding domain KUI_1602 PF02195 ParB-like nuclease domain KUI_1602 PF17762 HTH domain found in ParB protein KUI_1603 PF13614 AAA domain KUI_1604 PF02527 rRNA small subunit methyltransferase G KUI_1605 PF13932 GidA associated domain KUI_1605 PF01134 Glucose inhibited division protein A KUI_1606 PF01230 HIT domain KUI_1607 PF02096 60Kd inner membrane protein KUI_1607 PF14849 YidC periplasmic domain KUI_1608 PF01809 Putative membrane protein insertion efficiency factor KUI_1609 PF00825 Ribonuclease P KUI_1610 PF00468 Ribosomal protein L34