locus-tag class description PJH08_00005 PF12161 HsdM N-terminal domain PJH08_00005 PF02384 N-6 DNA Methylase PJH08_00010 PF08463 EcoEI R protein C-terminal PJH08_00010 PF00271 Helicase conserved C-terminal domain PJH08_00010 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) PJH08_00010 PF04851 Type III restriction enzyme, res subunit PJH08_00040 PF13614 AAA domain PJH08_00070 PF17761 DUF1016 N-terminal domain PJH08_00070 PF06250 YhcG PDDEXK nuclease domain PJH08_00090 PF01420 Type I restriction modification DNA specificity domain PJH08_00095 PF01420 Type I restriction modification DNA specificity domain PJH08_00110 PF02416 mttA/Hcf106 family PJH08_00115 PF01906 Putative heavy-metal-binding PJH08_00120 PF01145 SPFH domain / Band 7 family PJH08_00135 PF01134 Glucose inhibited division protein A PJH08_00135 PF13932 GidA associated domain PJH08_00140 PF02130 Uncharacterized protein family UPF0054 PJH08_00150 PF00749 tRNA synthetases class I (E and Q), catalytic domain PJH08_00165 PF00149 Calcineurin-like phosphoesterase PJH08_00165 PF12320 Type 5 capsule protein repressor C-terminal domain PJH08_00170 PF13476 AAA domain PJH08_00195 PF17757 UvrB interaction domain PJH08_00195 PF03461 TRCF domain PJH08_00195 PF00271 Helicase conserved C-terminal domain PJH08_00195 PF00270 DEAD/DEAH box helicase PJH08_00195 PF02559 CarD-like/TRCF domain PJH08_00200 PF00892 EamA-like transporter family PJH08_00210 PF02481 DNA recombination-mediator protein A PJH08_00210 PF17782 DprA winged helix domain PJH08_00225 PF08443 RimK-like ATP-grasp domain PJH08_00225 PF18030 RimK PreATP-grasp domain PJH08_00230 PF12804 MobA-like NTP transferase domain PJH08_00235 PF03807 NADP oxidoreductase coenzyme F420-dependent PJH08_00235 PF14748 Pyrroline-5-carboxylate reductase dimerisation PJH08_00240 PF01967 MoaC family PJH08_00245 PF03453 MoeA N-terminal region (domain I and II) PJH08_00245 PF00994 Probable molybdopterin binding domain PJH08_00245 PF03454 MoeA C-terminal region (domain IV) PJH08_00250 PF06463 Molybdenum Cofactor Synthesis C PJH08_00250 PF04055 Radical SAM superfamily PJH08_00260 PF01624 MutS domain I PJH08_00260 PF05188 MutS domain II PJH08_00260 PF05192 MutS domain III PJH08_00260 PF05190 MutS family domain IV PJH08_00260 PF00488 MutS domain V PJH08_00270 PF01541 GIY-YIG catalytic domain PJH08_00270 PF08459 UvrC Helix-hairpin-helix N-terminal PJH08_00275 PF01734 Patatin-like phospholipase PJH08_00285 PF10150 Ribonuclease E/G family PJH08_00285 PF00575 S1 RNA binding domain PJH08_00290 PF00216 Bacterial DNA-binding protein PJH08_00310 PF07715 TonB-dependent Receptor Plug Domain PJH08_00310 PF00593 TonB dependent receptor PJH08_00315 PF14815 NUDIX domain PJH08_00315 PF00730 HhH-GPD superfamily base excision DNA repair protein PJH08_00315 PF00633 Helix-hairpin-helix motif PJH08_00320 PF00436 Single-strand binding protein family PJH08_00325 PF00571 CBS domain PJH08_00325 PF03471 Transporter associated domain PJH08_00355 PF00892 EamA-like transporter family PJH08_00360 PF05193 Peptidase M16 inactive domain PJH08_00360 PF00675 Insulinase (Peptidase family M16) PJH08_00365 PF05193 Peptidase M16 inactive domain PJH08_00365 PF00675 Insulinase (Peptidase family M16) PJH08_00370 PF00829 Ribosomal prokaryotic L21 protein PJH08_00375 PF01016 Ribosomal L27 protein PJH08_00380 PF04397 LytTr DNA-binding domain PJH08_00380 PF00072 Response regulator receiver domain PJH08_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_00385 PF06580 Histidine kinase PJH08_00390 PF00581 Rhodanese-like domain PJH08_00390 PF12368 Rhodanase C-terminal PJH08_00390 PF17773 UPF0176 acylphosphatase like domain PJH08_00395 PF01118 Semialdehyde dehydrogenase, NAD binding domain PJH08_00395 PF02774 Semialdehyde dehydrogenase, dimerisation domain PJH08_00400 PF01966 HD domain PJH08_00405 PF00378 Enoyl-CoA hydratase/isomerase PJH08_00410 PF00512 His Kinase A (phospho-acceptor) domain PJH08_00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_00410 PF00672 HAMP domain PJH08_00415 PF09115 DNA polymerase III, delta subunit, C terminal PJH08_00425 PF07664 Ferrous iron transport protein B C terminus PJH08_00425 PF02421 Ferrous iron transport protein B PJH08_00425 PF07670 Nucleoside recognition PJH08_00435 PF05525 Branched-chain amino acid transport protein PJH08_00440 PF12697 Alpha/beta hydrolase family PJH08_00460 PF02390 Putative methyltransferase PJH08_00475 PF01883 Iron-sulfur cluster assembly protein PJH08_00475 PF10609 NUBPL iron-transfer P-loop NTPase PJH08_00480 PF01106 NifU-like domain PJH08_00485 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_00490 PF04116 Fatty acid hydroxylase superfamily PJH08_00495 PF00111 2Fe-2S iron-sulfur cluster binding domain PJH08_00500 PF01226 Formate/nitrite transporter PJH08_00505 PF00258 Flavodoxin PJH08_00525 PF00593 TonB dependent receptor PJH08_00525 PF07715 TonB-dependent Receptor Plug Domain PJH08_00535 PF03061 Thioesterase superfamily PJH08_00540 PF01594 AI-2E family transporter PJH08_00560 PF00483 Nucleotidyl transferase PJH08_00565 PF00005 ABC transporter PJH08_00565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PJH08_00570 PF00041 Fibronectin type III domain PJH08_00570 PF00704 Glycosyl hydrolases family 18 PJH08_00575 PF02868 Thermolysin metallopeptidase, alpha-helical domain PJH08_00575 PF01447 Thermolysin metallopeptidase, catalytic domain PJH08_00575 PF03413 Peptidase propeptide and YPEB domain PJH08_00575 PF07504 Fungalysin/Thermolysin Propeptide Motif PJH08_00580 PF12848 ABC transporter PJH08_00580 PF16326 ABC transporter C-terminal domain PJH08_00580 PF00005 ABC transporter PJH08_00590 PF00072 Response regulator receiver domain PJH08_00590 PF00486 Transcriptional regulatory protein, C terminal PJH08_00595 PF00989 PAS fold PJH08_00595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_00595 PF00512 His Kinase A (phospho-acceptor) domain PJH08_00595 PF16736 Single Cache-like PJH08_00600 PF02844 Phosphoribosylglycinamide synthetase, N domain PJH08_00600 PF02843 Phosphoribosylglycinamide synthetase, C domain PJH08_00600 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PJH08_00610 PF03572 Peptidase family S41 PJH08_00610 PF00595 PDZ domain PJH08_00615 PF13180 PDZ domain PJH08_00615 PF01471 Putative peptidoglycan binding domain PJH08_00615 PF03572 Peptidase family S41 PJH08_00620 PF00825 Ribonuclease P PJH08_00635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJH08_00635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJH08_00635 PF02770 Acyl-CoA dehydrogenase, middle domain PJH08_00640 PF03544 Gram-negative bacterial TonB protein C-terminal PJH08_00655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PJH08_00655 PF14572 Phosphoribosyl synthetase-associated domain PJH08_00660 PF14693 Ribosomal protein TL5, C-terminal domain PJH08_00660 PF01386 Ribosomal L25p family PJH08_00665 PF01195 Peptidyl-tRNA hydrolase PJH08_00680 PF01242 6-pyruvoyl tetrahydropterin synthase PJH08_00690 PF00378 Enoyl-CoA hydratase/isomerase PJH08_00695 PF01554 MatE PJH08_00700 PF01624 MutS domain I PJH08_00700 PF05188 MutS domain II PJH08_00700 PF05190 MutS family domain IV PJH08_00700 PF00488 MutS domain V PJH08_00700 PF05192 MutS domain III PJH08_00705 PF00588 SpoU rRNA Methylase family PJH08_00705 PF08032 RNA 2'-O ribose methyltransferase substrate binding PJH08_00715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_00715 PF07730 Histidine kinase PJH08_00725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PJH08_00725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PJH08_00730 PF07715 TonB-dependent Receptor Plug Domain PJH08_00730 PF00593 TonB dependent receptor PJH08_00745 PF04209 homogentisate 1,2-dioxygenase PJH08_00750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PJH08_00755 PF03301 Tryptophan 2,3-dioxygenase PJH08_00765 PF01551 Peptidase family M23 PJH08_00770 PF00342 Phosphoglucose isomerase PJH08_00775 PF07715 TonB-dependent Receptor Plug Domain PJH08_00775 PF00593 TonB dependent receptor PJH08_00800 PF00795 Carbon-nitrogen hydrolase PJH08_00810 PF02391 MoaE protein PJH08_00815 PF00162 Phosphoglycerate kinase PJH08_00820 PF00248 Aldo/keto reductase family PJH08_00835 PF00691 OmpA family PJH08_00835 PF13505 Outer membrane protein beta-barrel domain PJH08_00845 PF00579 tRNA synthetases class I (W and Y) PJH08_00855 PF03006 Haemolysin-III related PJH08_00860 PF01928 CYTH domain PJH08_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJH08_00920 PF08447 PAS fold PJH08_00925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJH08_00925 PF08447 PAS fold PJH08_00930 PF00390 Malic enzyme, N-terminal domain PJH08_00930 PF01515 Phosphate acetyl/butaryl transferase PJH08_00930 PF03949 Malic enzyme, NAD binding domain PJH08_00935 PF01330 RuvA N terminal domain PJH08_00935 PF07499 RuvA, C-terminal domain PJH08_00945 PF01597 Glycine cleavage H-protein PJH08_00965 PF00535 Glycosyl transferase family 2 PJH08_00970 PF01979 Amidohydrolase family PJH08_00995 PF00579 tRNA synthetases class I (W and Y) PJH08_01010 PF03781 Sulfatase-modifying factor enzyme 1 PJH08_01020 PF00034 Cytochrome c PJH08_01020 PF03150 Di-haem cytochrome c peroxidase PJH08_01030 PF00593 TonB dependent receptor PJH08_01030 PF07715 TonB-dependent Receptor Plug Domain PJH08_01050 PF09334 tRNA synthetases class I (M) PJH08_01050 PF13603 Leucyl-tRNA synthetase, Domain 2 PJH08_01050 PF08264 Anticodon-binding domain of tRNA PJH08_01080 PF02272 DHHA1 domain PJH08_01080 PF17768 RecJ OB domain PJH08_01080 PF10141 Single-strand DNA-specific exonuclease, C terminal domain PJH08_01080 PF01368 DHH family PJH08_01090 PF01741 Large-conductance mechanosensitive channel, MscL PJH08_01095 PF01168 Alanine racemase, N-terminal domain PJH08_01095 PF00842 Alanine racemase, C-terminal domain PJH08_01100 PF00265 Thymidine kinase PJH08_01120 PF02576 RimP N-terminal domain PJH08_01125 PF08529 NusA N-terminal domain PJH08_01125 PF13184 NusA-like KH domain PJH08_01125 PF00575 S1 RNA binding domain PJH08_01130 PF11987 Translation-initiation factor 2 PJH08_01130 PF00009 Elongation factor Tu GTP binding domain PJH08_01130 PF04760 Translation initiation factor IF-2, N-terminal region PJH08_01240 PF00593 TonB dependent receptor PJH08_01240 PF07715 TonB-dependent Receptor Plug Domain PJH08_01250 PF01297 Zinc-uptake complex component A periplasmic PJH08_01255 PF00005 ABC transporter PJH08_01260 PF00950 ABC 3 transport family PJH08_01265 PF00950 ABC 3 transport family PJH08_01270 PF13361 UvrD-like helicase C-terminal domain PJH08_01270 PF00580 UvrD/REP helicase N-terminal domain PJH08_01275 PF00155 Aminotransferase class I and II PJH08_01280 PF00691 OmpA family PJH08_01280 PF13505 Outer membrane protein beta-barrel domain PJH08_01285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJH08_01285 PF02874 ATP synthase alpha/beta family, beta-barrel domain PJH08_01290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PJH08_01295 PF02416 mttA/Hcf106 family PJH08_01300 PF01596 O-methyltransferase PJH08_01305 PF02548 Ketopantoate hydroxymethyltransferase PJH08_01310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PJH08_01310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PJH08_01320 PF04055 Radical SAM superfamily PJH08_01320 PF06968 Biotin and Thiamin Synthesis associated domain PJH08_01335 PF00202 Aminotransferase class-III PJH08_01345 PF00155 Aminotransferase class I and II PJH08_01360 PF16078 2-oxoglutarate dehydrogenase N-terminus PJH08_01360 PF02779 Transketolase, pyrimidine binding domain PJH08_01360 PF16870 2-oxoglutarate dehydrogenase C-terminal PJH08_01360 PF00676 Dehydrogenase E1 component PJH08_01365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PJH08_01365 PF00364 Biotin-requiring enzyme PJH08_01365 PF02817 e3 binding domain PJH08_01370 PF00171 Aldehyde dehydrogenase family PJH08_01375 PF01479 S4 domain PJH08_01375 PF00849 RNA pseudouridylate synthase PJH08_01380 PF01926 50S ribosome-binding GTPase PJH08_01385 PF12146 Serine aminopeptidase, S33 PJH08_01390 PF02381 MraZ protein, putative antitoxin-like PJH08_01395 PF01795 MraW methylase family PJH08_01410 PF01225 Mur ligase family, catalytic domain PJH08_01410 PF02875 Mur ligase family, glutamate ligase domain PJH08_01410 PF08245 Mur ligase middle domain PJH08_01415 PF00953 Glycosyl transferase family 4 PJH08_01415 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PJH08_01420 PF08245 Mur ligase middle domain PJH08_01420 PF02875 Mur ligase family, glutamate ligase domain PJH08_01425 PF01098 Cell cycle protein PJH08_01435 PF02875 Mur ligase family, glutamate ligase domain PJH08_01435 PF08245 Mur ligase middle domain PJH08_01435 PF01225 Mur ligase family, catalytic domain PJH08_01450 PF12327 FtsZ family, C-terminal domain PJH08_01450 PF00091 Tubulin/FtsZ family, GTPase domain PJH08_01455 PF09424 Yqey-like protein PJH08_01470 PF00571 CBS domain PJH08_01475 PF00834 Ribulose-phosphate 3 epimerase family PJH08_01480 PF00140 Sigma-70 factor, region 1.2 PJH08_01480 PF04542 Sigma-70 region 2 PJH08_01480 PF04539 Sigma-70 region 3 PJH08_01480 PF04545 Sigma-70, region 4 PJH08_01480 PF03979 Sigma-70 factor, region 1.1 PJH08_01485 PF04542 Sigma-70 region 2 PJH08_01485 PF08281 Sigma-70, region 4 PJH08_01490 PF08281 Sigma-70, region 4 PJH08_01490 PF04542 Sigma-70 region 2 PJH08_01510 PF01209 ubiE/COQ5 methyltransferase family PJH08_01515 PF01106 NifU-like domain PJH08_01530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PJH08_01530 PF09180 Prolyl-tRNA synthetase, C-terminal PJH08_01530 PF03129 Anticodon binding domain PJH08_01545 PF01649 Ribosomal protein S20 PJH08_01560 PF01509 TruB family pseudouridylate synthase (N terminal domain) PJH08_01565 PF02673 Bacitracin resistance protein BacA PJH08_01575 PF18075 FtsX extracellular domain PJH08_01585 PF02033 Ribosome-binding factor A PJH08_01590 PF12704 MacB-like periplasmic core domain PJH08_01590 PF02687 FtsX-like permease family PJH08_01605 PF01207 Dihydrouridine synthase (Dus) PJH08_01625 PF03358 NADPH-dependent FMN reductase PJH08_01635 PF06421 GTP-binding protein LepA C-terminus PJH08_01635 PF03144 Elongation factor Tu domain 2 PJH08_01635 PF00009 Elongation factor Tu GTP binding domain PJH08_01635 PF00679 Elongation factor G C-terminus PJH08_01650 PF00593 TonB dependent receptor PJH08_01650 PF07715 TonB-dependent Receptor Plug Domain PJH08_01665 PF17763 Glutaminase/Asparaginase C-terminal domain PJH08_01665 PF00710 Asparaginase, N-terminal PJH08_01670 PF01618 MotA/TolQ/ExbB proton channel family PJH08_01680 PF02472 Biopolymer transport protein ExbD/TolR PJH08_01700 PF04552 Sigma-54, DNA binding domain PJH08_01700 PF04963 Sigma-54 factor, core binding domain PJH08_01700 PF00309 Sigma-54 factor, Activator interacting domain (AID) PJH08_01705 PF01336 OB-fold nucleic acid binding domain PJH08_01705 PF00152 tRNA synthetases class II (D, K and N) PJH08_01720 PF01765 Ribosome recycling factor PJH08_01725 PF00696 Amino acid kinase family PJH08_01730 PF00889 Elongation factor TS PJH08_01735 PF00318 Ribosomal protein S2 PJH08_01740 PF00380 Ribosomal protein S9/S16 PJH08_01745 PF00572 Ribosomal protein L13 PJH08_01755 PF02424 ApbE family PJH08_01760 PF01209 ubiE/COQ5 methyltransferase family PJH08_01770 PF00557 Metallopeptidase family M24 PJH08_01775 PF01676 Metalloenzyme superfamily PJH08_01775 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PJH08_01780 PF01435 Peptidase family M48 PJH08_01785 PF00351 Biopterin-dependent aromatic amino acid hydroxylase PJH08_01805 PF01593 Flavin containing amine oxidoreductase PJH08_01835 PF03109 ABC1 family PJH08_01845 PF11066 Protein of unknown function (DUF2867) PJH08_01845 PF13460 NAD(P)H-binding PJH08_01865 PF00255 Glutathione peroxidase PJH08_01875 PF03441 FAD binding domain of DNA photolyase PJH08_01875 PF00875 DNA photolyase PJH08_01880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PJH08_01880 PF01411 tRNA synthetases class II (A) PJH08_01880 PF02272 DHHA1 domain PJH08_01895 PF00593 TonB dependent receptor PJH08_01895 PF07715 TonB-dependent Receptor Plug Domain PJH08_01930 PF16655 PhoD-like phosphatase, N-terminal domain PJH08_01930 PF09423 PhoD-like phosphatase PJH08_01940 PF04241 Protein of unknown function (DUF423) PJH08_01950 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PJH08_01955 PF01625 Peptide methionine sulfoxide reductase PJH08_01960 PF01641 SelR domain PJH08_01975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PJH08_01975 PF01926 50S ribosome-binding GTPase PJH08_01985 PF07650 KH domain PJH08_01985 PF01926 50S ribosome-binding GTPase PJH08_02020 PF02423 Ornithine cyclodeaminase/mu-crystallin family PJH08_02025 PF05544 Proline racemase PJH08_02035 PF00202 Aminotransferase class-III PJH08_02045 PF00557 Metallopeptidase family M24 PJH08_02045 PF01321 Creatinase/Prolidase N-terminal domain PJH08_02050 PF05195 Aminopeptidase P, N-terminal domain PJH08_02050 PF00557 Metallopeptidase family M24 PJH08_02055 PF01266 FAD dependent oxidoreductase PJH08_02065 PF05544 Proline racemase PJH08_02070 PF00171 Aldehyde dehydrogenase family PJH08_02075 PF00701 Dihydrodipicolinate synthetase family PJH08_02080 PF12833 Helix-turn-helix domain PJH08_02080 PF14525 AraC-binding-like domain PJH08_02085 PF01177 Asp/Glu/Hydantoin racemase PJH08_02100 PF07244 Surface antigen variable number repeat PJH08_02100 PF01103 Surface antigen PJH08_02105 PF01255 Putative undecaprenyl diphosphate synthase PJH08_02115 PF01513 ATP-NAD kinase PJH08_02125 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PJH08_02130 PF00561 alpha/beta hydrolase fold PJH08_02135 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV PJH08_02140 PF05697 Bacterial trigger factor protein (TF) PJH08_02140 PF05698 Bacterial trigger factor protein (TF) C-terminus PJH08_02145 PF00574 Clp protease PJH08_02150 PF06689 ClpX C4-type zinc finger PJH08_02150 PF10431 C-terminal, D2-small domain, of ClpB protein PJH08_02150 PF07724 AAA domain (Cdc48 subfamily) PJH08_02160 PF01807 CHC2 zinc finger PJH08_02160 PF08275 DNA primase catalytic core, N-terminal domain PJH08_02160 PF10410 DnaB-helicase binding domain of primase PJH08_02165 PF02540 NAD synthase PJH08_02180 PF01584 CheW-like domain PJH08_02180 PF00072 Response regulator receiver domain PJH08_02185 PF00072 Response regulator receiver domain PJH08_02185 PF00196 Bacterial regulatory proteins, luxR family PJH08_02190 PF01712 Deoxynucleoside kinase PJH08_02200 PF00575 S1 RNA binding domain PJH08_02200 PF03725 3' exoribonuclease family, domain 2 PJH08_02200 PF01138 3' exoribonuclease family, domain 1 PJH08_02200 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PJH08_02200 PF00013 KH domain PJH08_02205 PF00312 Ribosomal protein S15 PJH08_02210 PF01039 Carboxyl transferase domain PJH08_02215 PF01116 Fructose-bisphosphate aldolase class-II PJH08_02225 PF08032 RNA 2'-O ribose methyltransferase substrate binding PJH08_02225 PF00588 SpoU rRNA Methylase family PJH08_02230 PF01712 Deoxynucleoside kinase PJH08_02235 PF01447 Thermolysin metallopeptidase, catalytic domain PJH08_02235 PF02868 Thermolysin metallopeptidase, alpha-helical domain PJH08_02235 PF04389 Peptidase family M28 PJH08_02240 PF03099 Biotin/lipoate A/B protein ligase family PJH08_02245 PF04264 YceI-like domain PJH08_02250 PF00899 ThiF family PJH08_02265 PF02580 D-Tyr-tRNA(Tyr) deacylase PJH08_02270 PF16745 RsgA N-terminal domain PJH08_02270 PF03193 RsgA GTPase PJH08_02275 PF00793 DAHP synthetase I family PJH08_02275 PF18152 DAHP synthase ferredoxin-like domain PJH08_02280 PF02153 Prephenate dehydrogenase PJH08_02280 PF01817 Chorismate mutase type II PJH08_02285 PF00155 Aminotransferase class I and II PJH08_02350 PF01515 Phosphate acetyl/butaryl transferase PJH08_02350 PF07085 DRTGG domain PJH08_02355 PF00871 Acetokinase family PJH08_02360 PF01416 tRNA pseudouridine synthase PJH08_02370 PF03702 Anhydro-N-acetylmuramic acid kinase PJH08_02380 PF06450 Bacterial Na+/H+ antiporter B (NhaB) PJH08_02385 PF01618 MotA/TolQ/ExbB proton channel family PJH08_02400 PF02875 Mur ligase family, glutamate ligase domain PJH08_02400 PF08245 Mur ligase middle domain PJH08_02420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PJH08_02420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PJH08_02420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PJH08_02430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PJH08_02430 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PJH08_02435 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_02445 PF01370 NAD dependent epimerase/dehydratase family PJH08_02450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PJH08_02450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PJH08_02450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PJH08_02470 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 PJH08_02470 PF00535 Glycosyl transferase family 2 PJH08_02495 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_02500 PF02397 Bacterial sugar transferase PJH08_02505 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PJH08_02510 PF00483 Nucleotidyl transferase PJH08_02515 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PJH08_02520 PF16363 GDP-mannose 4,6 dehydratase PJH08_02530 PF00958 GMP synthase C terminal domain PJH08_02530 PF02540 NAD synthase PJH08_02530 PF00117 Glutamine amidotransferase class-I PJH08_02535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJH08_02535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJH08_02540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PJH08_02555 PF08245 Mur ligase middle domain PJH08_02555 PF02875 Mur ligase family, glutamate ligase domain PJH08_02555 PF01225 Mur ligase family, catalytic domain PJH08_02560 PF02719 Polysaccharide biosynthesis protein PJH08_02570 PF05140 ResB-like family PJH08_02570 PF01578 Cytochrome C assembly protein PJH08_02575 PF02666 Phosphatidylserine decarboxylase PJH08_02580 PF02310 B12 binding domain PJH08_02580 PF01642 Methylmalonyl-CoA mutase PJH08_02585 PF01642 Methylmalonyl-CoA mutase PJH08_02595 PF00485 Phosphoribulokinase / Uridine kinase family PJH08_02620 PF12833 Helix-turn-helix domain PJH08_02620 PF02311 AraC-like ligand binding domain PJH08_02625 PF06100 MCRA family PJH08_02635 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PJH08_02650 PF00809 Pterin binding enzyme PJH08_02655 PF02457 DisA bacterial checkpoint controller nucleotide-binding PJH08_02665 PF00664 ABC transporter transmembrane region PJH08_02665 PF00005 ABC transporter PJH08_02670 PF01416 tRNA pseudouridine synthase PJH08_02680 PF07730 Histidine kinase PJH08_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_02705 PF00196 Bacterial regulatory proteins, luxR family PJH08_02705 PF00072 Response regulator receiver domain PJH08_02715 PF07497 Rho termination factor, RNA-binding domain PJH08_02715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJH08_02720 PF01812 5-formyltetrahydrofolate cyclo-ligase family PJH08_02730 PF04237 YjbR PJH08_02740 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_02750 PF00246 Zinc carboxypeptidase PJH08_02750 PF18027 Cytosolic carboxypeptidase N-terminal domain PJH08_02760 PF03051 Peptidase C1-like family PJH08_02795 PF13419 Haloacid dehalogenase-like hydrolase PJH08_02800 PF00334 Nucleoside diphosphate kinase PJH08_02810 PF01368 DHH family PJH08_02810 PF02272 DHHA1 domain PJH08_02820 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PJH08_02820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJH08_02825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PJH08_02830 PF01569 PAP2 superfamily PJH08_02855 PF02585 GlcNAc-PI de-N-acetylase PJH08_02905 PF01389 OmpA-like transmembrane domain PJH08_02905 PF00691 OmpA family PJH08_02940 PF02622 Uncharacterized ACR, COG1678 PJH08_02945 PF00072 Response regulator receiver domain PJH08_02945 PF04397 LytTr DNA-binding domain PJH08_02950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_02950 PF07694 5TMR of 5TMR-LYT PJH08_02950 PF06580 Histidine kinase PJH08_02960 PF00258 Flavodoxin PJH08_02960 PF00175 Oxidoreductase NAD-binding domain PJH08_02960 PF00667 FAD binding domain PJH08_02980 PF07715 TonB-dependent Receptor Plug Domain PJH08_02980 PF00593 TonB dependent receptor PJH08_02990 PF17760 UvrA interaction domain PJH08_02990 PF17755 UvrA DNA-binding domain PJH08_02990 PF00005 ABC transporter PJH08_02995 PF04542 Sigma-70 region 2 PJH08_02995 PF08281 Sigma-70, region 4 PJH08_03000 PF00730 HhH-GPD superfamily base excision DNA repair protein PJH08_03000 PF00633 Helix-hairpin-helix motif PJH08_03000 PF10576 Iron-sulfur binding domain of endonuclease III PJH08_03005 PF00578 AhpC/TSA family PJH08_03020 PF01979 Amidohydrolase family PJH08_03035 PF10079 Bacillithiol biosynthesis BshC PJH08_03040 PF05971 RNA methyltransferase PJH08_03050 PF10502 Signal peptidase, peptidase S26 PJH08_03055 PF05173 Dihydrodipicolinate reductase, C-terminus PJH08_03055 PF01113 Dihydrodipicolinate reductase, N-terminus PJH08_03065 PF00712 DNA polymerase III beta subunit, N-terminal domain PJH08_03065 PF02767 DNA polymerase III beta subunit, central domain PJH08_03065 PF02768 DNA polymerase III beta subunit, C-terminal domain PJH08_03075 PF03976 Polyphosphate kinase 2 (PPK2) PJH08_03080 PF03976 Polyphosphate kinase 2 (PPK2) PJH08_03095 PF00266 Aminotransferase class-V PJH08_03110 PF01784 NIF3 (NGG1p interacting factor 3) PJH08_03115 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PJH08_03125 PF00005 ABC transporter PJH08_03135 PF08442 ATP-grasp domain PJH08_03135 PF00549 CoA-ligase PJH08_03160 PF00271 Helicase conserved C-terminal domain PJH08_03160 PF12344 Ultra-violet resistance protein B PJH08_03160 PF17757 UvrB interaction domain PJH08_03160 PF04851 Type III restriction enzyme, res subunit PJH08_03175 PF00313 'Cold-shock' DNA-binding domain PJH08_03180 PF00313 'Cold-shock' DNA-binding domain PJH08_03185 PF00313 'Cold-shock' DNA-binding domain PJH08_03190 PF09962 Uncharacterized conserved protein (DUF2196) PJH08_03210 PF00919 Uncharacterized protein family UPF0004 PJH08_03210 PF01938 TRAM domain PJH08_03210 PF04055 Radical SAM superfamily PJH08_03220 PF03992 Antibiotic biosynthesis monooxygenase PJH08_03225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PJH08_03240 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease PJH08_03240 PF01694 Rhomboid family PJH08_03245 PF08676 MutL C terminal dimerisation domain PJH08_03245 PF01119 DNA mismatch repair protein, C-terminal domain PJH08_03255 PF00885 6,7-dimethyl-8-ribityllumazine synthase PJH08_03260 PF01389 OmpA-like transmembrane domain PJH08_03260 PF00691 OmpA family PJH08_03270 PF02463 RecF/RecN/SMC N terminal domain PJH08_03285 PF00106 short chain dehydrogenase PJH08_03290 PF00923 Transaldolase/Fructose-6-phosphate aldolase PJH08_03295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PJH08_03295 PF16582 Middle domain of thiamine pyrophosphate PJH08_03295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PJH08_03300 PF17783 CvfB-like winged helix domain PJH08_03300 PF13509 S1 domain PJH08_03310 PF00378 Enoyl-CoA hydratase/isomerase PJH08_03315 PF01557 Fumarylacetoacetate (FAA) hydrolase family PJH08_03320 PF18146 Damage-inducible protein CinA KH domain PJH08_03320 PF02464 Competence-damaged protein PJH08_03320 PF00994 Probable molybdopterin binding domain PJH08_03325 PF00830 Ribosomal L28 family PJH08_03330 PF00471 Ribosomal protein L33 PJH08_03340 PF00448 SRP54-type protein, GTPase domain PJH08_03340 PF02881 SRP54-type protein, helical bundle domain PJH08_03355 PF00919 Uncharacterized protein family UPF0004 PJH08_03355 PF18693 TRAM domain PJH08_03355 PF04055 Radical SAM superfamily PJH08_03385 PF00230 Major intrinsic protein PJH08_03410 PF02562 PhoH-like protein PJH08_03420 PF01259 SAICAR synthetase PJH08_03430 PF12241 Trans-2-enoyl-CoA reductase catalytic region PJH08_03430 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PJH08_03430 PF07055 Enoyl reductase FAD binding domain PJH08_03440 PF00155 Aminotransferase class I and II PJH08_03495 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PJH08_03505 PF16658 Class II release factor RF3, C-terminal domain PJH08_03505 PF03144 Elongation factor Tu domain 2 PJH08_03505 PF00009 Elongation factor Tu GTP binding domain PJH08_03510 PF00293 NUDIX domain PJH08_03520 PF01238 Phosphomannose isomerase type I PJH08_03530 PF02348 Cytidylyltransferase PJH08_03540 PF00302 Chloramphenicol acetyltransferase PJH08_03580 PF03883 Peroxide stress protein YaaA PJH08_03585 PF02698 DUF218 domain PJH08_03590 PF03313 Serine dehydratase alpha chain PJH08_03590 PF03315 Serine dehydratase beta chain PJH08_03605 PF00474 Sodium:solute symporter family PJH08_03610 PF00365 Phosphofructokinase PJH08_03615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PJH08_03615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PJH08_03620 PF01042 Endoribonuclease L-PSP PJH08_03625 PF04453 LPS transport system D PJH08_03625 PF03968 OstA-like protein PJH08_03630 PF01520 N-acetylmuramoyl-L-alanine amidase PJH08_03640 PF02754 Cysteine-rich domain PJH08_03640 PF13183 4Fe-4S dicluster domain PJH08_03645 PF13183 4Fe-4S dicluster domain PJH08_03645 PF02754 Cysteine-rich domain PJH08_03655 PF01040 UbiA prenyltransferase family PJH08_03670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PJH08_03670 PF13378 Enolase C-terminal domain-like PJH08_03675 PF02517 CPBP intramembrane metalloprotease PJH08_03690 PF00410 Ribosomal protein S8 PJH08_03695 PF00347 Ribosomal protein L6 PJH08_03700 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PJH08_03705 PF00333 Ribosomal protein S5, N-terminal domain PJH08_03705 PF03719 Ribosomal protein S5, C-terminal domain PJH08_03710 PF00327 Ribosomal protein L30p/L7e PJH08_03715 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PJH08_03720 PF00344 SecY translocase PJH08_03725 PF01176 Translation initiation factor 1A / IF-1 PJH08_03730 PF00444 Ribosomal protein L36 PJH08_03735 PF00416 Ribosomal protein S13/S18 PJH08_03740 PF00411 Ribosomal protein S11 PJH08_03745 PF00163 Ribosomal protein S4/S9 N-terminal domain PJH08_03745 PF01479 S4 domain PJH08_03750 PF01000 RNA polymerase Rpb3/RpoA insert domain PJH08_03750 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PJH08_03750 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PJH08_03755 PF01196 Ribosomal protein L17 PJH08_03760 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PJH08_03760 PF00117 Glutamine amidotransferase class-I PJH08_03765 PF03952 Enolase, N-terminal domain PJH08_03765 PF00113 Enolase, C-terminal TIM barrel domain PJH08_03770 PF00285 Citrate synthase, C-terminal domain PJH08_03775 PF00491 Arginase family PJH08_03780 PF02597 ThiS family PJH08_03785 PF13667 ThiC-associated domain PJH08_03785 PF01964 Radical SAM ThiC family PJH08_03790 PF02581 Thiamine monophosphate synthase PJH08_03795 PF08543 Phosphomethylpyrimidine kinase PJH08_03800 PF02581 Thiamine monophosphate synthase PJH08_03805 PF05690 Thiazole biosynthesis protein ThiG PJH08_03810 PF06968 Biotin and Thiamin Synthesis associated domain PJH08_03810 PF04055 Radical SAM superfamily PJH08_03815 PF00581 Rhodanese-like domain PJH08_03815 PF00899 ThiF family PJH08_03830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_03835 PF00106 short chain dehydrogenase PJH08_03850 PF04389 Peptidase family M28 PJH08_03850 PF02225 PA domain PJH08_03855 PF00005 ABC transporter PJH08_03860 PF01032 FecCD transport family PJH08_03865 PF01725 Ham1 family PJH08_03875 PF02590 Predicted SPOUT methyltransferase PJH08_03880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PJH08_03880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PJH08_03890 PF03631 Virulence factor BrkB PJH08_03895 PF13393 Histidyl-tRNA synthetase PJH08_03895 PF03129 Anticodon binding domain PJH08_03900 PF01227 GTP cyclohydrolase I PJH08_03905 PF00593 TonB dependent receptor PJH08_03905 PF07715 TonB-dependent Receptor Plug Domain PJH08_03920 PF00486 Transcriptional regulatory protein, C terminal PJH08_03920 PF00072 Response regulator receiver domain PJH08_03925 PF00512 His Kinase A (phospho-acceptor) domain PJH08_03925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_03935 PF01121 Dephospho-CoA kinase PJH08_03945 PF02699 Preprotein translocase subunit PJH08_03955 PF01029 NusB family PJH08_03960 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PJH08_03960 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PJH08_03965 PF00664 ABC transporter transmembrane region PJH08_03965 PF00005 ABC transporter PJH08_03975 PF00425 chorismate binding enzyme PJH08_03980 PF03061 Thioesterase superfamily PJH08_03990 PF01300 Telomere recombination PJH08_04010 PF12848 ABC transporter PJH08_04010 PF16326 ABC transporter C-terminal domain PJH08_04010 PF00005 ABC transporter PJH08_04015 PF00814 Glycoprotease family PJH08_04040 PF08501 Shikimate dehydrogenase substrate binding domain PJH08_04055 PF01551 Peptidase family M23 PJH08_04055 PF08460 Bacterial SH3 domain PJH08_04075 PF12072 Domain of unknown function (DUF3552) PJH08_04075 PF01966 HD domain PJH08_04075 PF00013 KH domain PJH08_04080 PF01380 SIS domain PJH08_04115 PF03971 Monomeric isocitrate dehydrogenase PJH08_04120 PF01245 Ribosomal protein L19 PJH08_04125 PF01746 tRNA (Guanine-1)-methyltransferase PJH08_04130 PF00849 RNA pseudouridylate synthase PJH08_04135 PF04336 Acyl carrier protein phosphodiesterase PJH08_04140 PF07687 Peptidase dimerisation domain PJH08_04140 PF01546 Peptidase family M20/M25/M40 PJH08_04145 PF02132 RecR protein PJH08_04145 PF13662 Toprim domain PJH08_04155 PF03653 Uncharacterised protein family (UPF0093) PJH08_04165 PF00762 Ferrochelatase PJH08_04175 PF12833 Helix-turn-helix domain PJH08_04180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PJH08_04180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PJH08_04180 PF01488 Shikimate / quinate 5-dehydrogenase PJH08_04185 PF03900 Porphobilinogen deaminase, C-terminal domain PJH08_04185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PJH08_04190 PF00490 Delta-aminolevulinic acid dehydratase PJH08_04195 PF00202 Aminotransferase class-III PJH08_04200 PF01208 Uroporphyrinogen decarboxylase (URO-D) PJH08_04215 PF01218 Coproporphyrinogen III oxidase PJH08_04220 PF02817 e3 binding domain PJH08_04220 PF00364 Biotin-requiring enzyme PJH08_04220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PJH08_04225 PF01370 NAD dependent epimerase/dehydratase family PJH08_04225 PF08338 Domain of unknown function (DUF1731) PJH08_04240 PF01588 Putative tRNA binding domain PJH08_04240 PF09334 tRNA synthetases class I (M) PJH08_04250 PF01406 tRNA synthetases class I (C) catalytic domain PJH08_04250 PF09190 DALR domain PJH08_04255 PF01809 Putative membrane protein insertion efficiency factor PJH08_04260 PF01790 Prolipoprotein diacylglyceryl transferase PJH08_04265 PF00561 alpha/beta hydrolase fold PJH08_04275 PF00684 DnaJ central domain PJH08_04275 PF01556 DnaJ C terminal domain PJH08_04275 PF00226 DnaJ domain PJH08_04280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PJH08_04290 PF10415 Fumarase C C-terminus PJH08_04290 PF00206 Lyase PJH08_04305 PF02096 60Kd inner membrane protein PJH08_04305 PF14849 YidC periplasmic domain PJH08_04310 PF06418 CTP synthase N-terminus PJH08_04310 PF00117 Glutamine amidotransferase class-I PJH08_04315 PF00468 Ribosomal protein L34 PJH08_04320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PJH08_04320 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PJH08_04320 PF02142 MGS-like domain PJH08_04325 PF03061 Thioesterase superfamily PJH08_04345 PF00588 SpoU rRNA Methylase family PJH08_04350 PF01751 Toprim domain PJH08_04350 PF01131 DNA topoisomerase PJH08_04355 PF09905 DNA-binding protein VF530 PJH08_04380 PF00149 Calcineurin-like phosphoesterase PJH08_04410 PF01433 Peptidase family M1 domain PJH08_04410 PF11838 ERAP1-like C-terminal domain PJH08_04420 PF01497 Periplasmic binding protein PJH08_04430 PF02654 Cobalamin-5-phosphate synthase PJH08_04435 PF02277 Phosphoribosyltransferase PJH08_04440 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PJH08_04445 PF07715 TonB-dependent Receptor Plug Domain PJH08_04445 PF00593 TonB dependent receptor PJH08_04455 PF04134 Protein of unknown function, DUF393 PJH08_04460 PF00005 ABC transporter PJH08_04465 PF02687 FtsX-like permease family PJH08_04465 PF00005 ABC transporter PJH08_04465 PF12704 MacB-like periplasmic core domain PJH08_04470 PF00005 ABC transporter PJH08_04470 PF02687 FtsX-like permease family PJH08_04470 PF12704 MacB-like periplasmic core domain PJH08_04480 PF01571 Aminomethyltransferase folate-binding domain PJH08_04480 PF08669 Glycine cleavage T-protein C-terminal barrel domain PJH08_04485 PF09905 DNA-binding protein VF530 PJH08_04490 PF00271 Helicase conserved C-terminal domain PJH08_04490 PF17764 3′ DNA-binding domain (3′BD) PJH08_04490 PF18074 Primosomal protein N C-terminal domain PJH08_04490 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PJH08_04490 PF04851 Type III restriction enzyme, res subunit PJH08_04495 PF00106 short chain dehydrogenase PJH08_04500 PF03819 MazG nucleotide pyrophosphohydrolase domain PJH08_04510 PF01327 Polypeptide deformylase PJH08_04515 PF03652 Holliday junction resolvase PJH08_04520 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_04520 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PJH08_04520 PF14602 Hexapeptide repeat of succinyl-transferase PJH08_04525 PF00534 Glycosyl transferases group 1 PJH08_04525 PF13439 Glycosyltransferase Family 4 PJH08_04530 PF00535 Glycosyl transferase family 2 PJH08_04540 PF01300 Telomere recombination PJH08_04550 PF01743 Poly A polymerase head domain PJH08_04550 PF01368 DHH family PJH08_04550 PF00571 CBS domain PJH08_04550 PF02272 DHHA1 domain PJH08_04555 PF00005 ABC transporter PJH08_04555 PF00664 ABC transporter transmembrane region PJH08_04560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PJH08_04560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PJH08_04560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PJH08_04560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PJH08_04565 PF00535 Glycosyl transferase family 2 PJH08_04580 PF00589 Phage integrase family PJH08_04580 PF02899 Phage integrase, N-terminal SAM-like domain PJH08_04590 PF01220 Dehydroquinase class II PJH08_04605 PF01066 CDP-alcohol phosphatidyltransferase PJH08_04610 PF00005 ABC transporter PJH08_04620 PF00902 Sec-independent protein translocase protein (TatC) PJH08_04625 PF01380 SIS domain PJH08_04625 PF00571 CBS domain PJH08_04630 PF09382 RQC domain PJH08_04630 PF00570 HRDC domain PJH08_04630 PF00271 Helicase conserved C-terminal domain PJH08_04630 PF00270 DEAD/DEAH box helicase PJH08_04630 PF16124 RecQ zinc-binding PJH08_04645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PJH08_04645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PJH08_04655 PF02954 Bacterial regulatory protein, Fis family PJH08_04655 PF00158 Sigma-54 interaction domain PJH08_04655 PF00072 Response regulator receiver domain PJH08_04660 PF01966 HD domain PJH08_04665 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PJH08_04665 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_04670 PF07977 FabA-like domain PJH08_04670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PJH08_04680 PF08207 Elongation factor P (EF-P) KOW-like domain PJH08_04680 PF01132 Elongation factor P (EF-P) OB domain PJH08_04680 PF09285 Elongation factor P, C-terminal PJH08_04685 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_04685 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PJH08_04690 PF02629 CoA binding domain PJH08_04690 PF00549 CoA-ligase PJH08_04700 PF02514 CobN/Magnesium Chelatase PJH08_04705 PF07683 Cobalamin synthesis protein cobW C-terminal domain PJH08_04705 PF02492 CobW/HypB/UreG, nucleotide-binding domain PJH08_04710 PF01923 Cobalamin adenosyltransferase PJH08_04715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PJH08_04715 PF07685 CobB/CobQ-like glutamine amidotransferase domain PJH08_04720 PF17863 AAA lid domain PJH08_04720 PF01078 Magnesium chelatase, subunit ChlI PJH08_04730 PF01888 CbiD PJH08_04735 PF02571 Precorrin-6x reductase CbiJ/CobK PJH08_04740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_04745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_04750 PF00881 Nitroreductase family PJH08_04755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_04760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_04765 PF01903 CbiX PJH08_04770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_04770 PF14824 Sirohaem biosynthesis protein central PJH08_04770 PF10414 Sirohaem synthase dimerisation region PJH08_04785 PF00593 TonB dependent receptor PJH08_04785 PF07715 TonB-dependent Receptor Plug Domain PJH08_04785 PF07660 Secretin and TonB N terminus short domain PJH08_04795 PF03186 CobD/Cbib protein PJH08_04800 PF00155 Aminotransferase class I and II PJH08_04805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PJH08_04805 PF07685 CobB/CobQ-like glutamine amidotransferase domain PJH08_04810 PF06463 Molybdenum Cofactor Synthesis C PJH08_04810 PF04055 Radical SAM superfamily PJH08_04825 PF00072 Response regulator receiver domain PJH08_04825 PF01339 CheB methylesterase PJH08_04835 PF14492 Elongation Factor G, domain II PJH08_04835 PF03764 Elongation factor G, domain IV PJH08_04835 PF00679 Elongation factor G C-terminus PJH08_04835 PF00009 Elongation factor Tu GTP binding domain PJH08_04840 PF13545 Crp-like helix-turn-helix domain PJH08_04840 PF00027 Cyclic nucleotide-binding domain PJH08_04850 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) PJH08_04855 PF00361 Proton-conducting membrane transporter PJH08_04855 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PJH08_04860 PF01740 STAS domain PJH08_04860 PF00916 Sulfate permease family PJH08_04865 PF01420 Type I restriction modification DNA specificity domain PJH08_04885 PF00041 Fibronectin type III domain PJH08_04885 PF00704 Glycosyl hydrolases family 18 PJH08_04915 PF12102 Domain of unknown function (DUF3578) PJH08_04915 PF07728 AAA domain (dynein-related subfamily) PJH08_04920 PF01420 Type I restriction modification DNA specificity domain PJH08_04925 PF01420 Type I restriction modification DNA specificity domain PJH08_04935 PF02384 N-6 DNA Methylase PJH08_04945 PF08463 EcoEI R protein C-terminal PJH08_04945 PF00271 Helicase conserved C-terminal domain PJH08_04945 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PJH08_04945 PF04851 Type III restriction enzyme, res subunit PJH08_04955 PF02661 Fic/DOC family PJH08_04955 PF12728 Helix-turn-helix domain PJH08_04960 PF01555 DNA methylase PJH08_04960 PF18273 Type III R-M EcoP15I C-terminal domain PJH08_04965 PF18273 Type III R-M EcoP15I C-terminal domain PJH08_04965 PF01555 DNA methylase PJH08_04970 PF04851 Type III restriction enzyme, res subunit PJH08_04970 PF08774 VRR-NUC domain PJH08_04975 PF12728 Helix-turn-helix domain PJH08_04975 PF02661 Fic/DOC family PJH08_05020 PF02899 Phage integrase, N-terminal SAM-like domain PJH08_05020 PF00589 Phage integrase family PJH08_05030 PF01926 50S ribosome-binding GTPase PJH08_05030 PF12631 MnmE helical domain PJH08_05030 PF10396 GTP-binding protein TrmE N-terminus PJH08_05050 PF00691 OmpA family PJH08_05050 PF00223 Photosystem I psaA/psaB protein PJH08_05070 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain PJH08_05070 PF00207 Alpha-2-macroglobulin family PJH08_05070 PF07703 Alpha-2-macroglobulin bait region domain PJH08_05070 PF11974 Bacterial alpha-2-macroglobulin MG3 domain PJH08_05070 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain PJH08_05070 PF17962 Bacterial macroglobulin domain 6 PJH08_05070 PF01835 MG2 domain PJH08_05070 PF07678 A-macroglobulin TED domain PJH08_05070 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain PJH08_05085 PF01494 FAD binding domain PJH08_05090 PF01053 Cys/Met metabolism PLP-dependent enzyme PJH08_05095 PF00696 Amino acid kinase family PJH08_05095 PF01842 ACT domain PJH08_05095 PF00742 Homoserine dehydrogenase PJH08_05095 PF03447 Homoserine dehydrogenase, NAD binding domain PJH08_05095 PF13840 ACT domain PJH08_05100 PF01053 Cys/Met metabolism PLP-dependent enzyme PJH08_05105 PF02082 Transcriptional regulator PJH08_05115 PF01507 Phosphoadenosine phosphosulfate reductase family PJH08_05120 PF01507 Phosphoadenosine phosphosulfate reductase family PJH08_05125 PF00009 Elongation factor Tu GTP binding domain PJH08_05130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PJH08_05130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PJH08_05135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_05135 PF14824 Sirohaem biosynthesis protein central PJH08_05135 PF10414 Sirohaem synthase dimerisation region PJH08_05140 PF10414 Sirohaem synthase dimerisation region PJH08_05140 PF14824 Sirohaem biosynthesis protein central PJH08_05140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_05145 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_05150 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_05155 PF00291 Pyridoxal-phosphate dependent enzyme PJH08_05160 PF02965 Vitamin B12 dependent methionine synthase, activation domain PJH08_05160 PF02310 B12 binding domain PJH08_05160 PF00809 Pterin binding enzyme PJH08_05160 PF02574 Homocysteine S-methyltransferase PJH08_05160 PF02607 B12 binding domain PJH08_05165 PF02607 B12 binding domain PJH08_05165 PF02965 Vitamin B12 dependent methionine synthase, activation domain PJH08_05165 PF00809 Pterin binding enzyme PJH08_05165 PF02574 Homocysteine S-methyltransferase PJH08_05165 PF02310 B12 binding domain PJH08_05170 PF02219 Methylenetetrahydrofolate reductase PJH08_05180 PF08502 LeuA allosteric (dimerisation) domain PJH08_05180 PF00682 HMGL-like PJH08_05185 PF00330 Aconitase family (aconitate hydratase) PJH08_05190 PF00694 Aconitase C-terminal domain PJH08_05195 PF00180 Isocitrate/isopropylmalate dehydrogenase PJH08_05220 PF00920 Dehydratase family PJH08_05225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PJH08_05225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PJH08_05225 PF00205 Thiamine pyrophosphate enzyme, central domain PJH08_05235 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PJH08_05235 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PJH08_05240 PF00585 C-terminal regulatory domain of Threonine dehydratase PJH08_05240 PF00291 Pyridoxal-phosphate dependent enzyme PJH08_05245 PF00202 Aminotransferase class-III PJH08_05255 PF00282 Pyridoxal-dependent decarboxylase conserved domain PJH08_05260 PF00709 Adenylosuccinate synthetase PJH08_05265 PF01475 Ferric uptake regulator family PJH08_05270 PF13291 ACT domain PJH08_05270 PF04607 Region found in RelA / SpoT proteins PJH08_05270 PF02824 TGS domain PJH08_05280 PF01250 Ribosomal protein S6 PJH08_05285 PF01084 Ribosomal protein S18 PJH08_05290 PF03948 Ribosomal protein L9, C-terminal domain PJH08_05290 PF01281 Ribosomal protein L9, N-terminal domain PJH08_05295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PJH08_05295 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PJH08_05300 PF01546 Peptidase family M20/M25/M40 PJH08_05300 PF07687 Peptidase dimerisation domain PJH08_05315 PF00772 DnaB-like helicase N terminal domain PJH08_05315 PF03796 DnaB-like helicase C terminal domain PJH08_05315 PF14528 LAGLIDADG-like domain PJH08_05325 PF00456 Transketolase, thiamine diphosphate binding domain PJH08_05325 PF02780 Transketolase, C-terminal domain PJH08_05325 PF02779 Transketolase, pyrimidine binding domain PJH08_05330 PF00534 Glycosyl transferases group 1 PJH08_05330 PF13439 Glycosyltransferase Family 4 PJH08_05335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PJH08_05335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PJH08_05345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PJH08_05345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PJH08_05365 PF01048 Phosphorylase superfamily PJH08_05380 PF03150 Di-haem cytochrome c peroxidase PJH08_05380 PF00034 Cytochrome c PJH08_05405 PF05958 tRNA (Uracil-5-)-methyltransferase PJH08_05410 PF00691 OmpA family PJH08_05420 PF05552 Conserved TM helix PJH08_05425 PF00202 Aminotransferase class-III PJH08_05430 PF13087 AAA domain PJH08_05430 PF13091 PLD-like domain PJH08_05450 PF02575 YbaB/EbfC DNA-binding family PJH08_05455 PF00326 Prolyl oligopeptidase family PJH08_05455 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PJH08_05460 PF00571 CBS domain PJH08_05460 PF00291 Pyridoxal-phosphate dependent enzyme PJH08_05465 PF03928 Haem-degrading PJH08_05475 PF11954 Domain of unknown function (DUF3471) PJH08_05475 PF00144 Beta-lactamase PJH08_05485 PF02899 Phage integrase, N-terminal SAM-like domain PJH08_05485 PF00589 Phage integrase family PJH08_05495 PF03880 DbpA RNA binding domain PJH08_05495 PF00270 DEAD/DEAH box helicase PJH08_05495 PF00271 Helicase conserved C-terminal domain PJH08_05505 PF00912 Transglycosylase PJH08_05505 PF00905 Penicillin binding protein transpeptidase domain PJH08_05550 PF13361 UvrD-like helicase C-terminal domain PJH08_05550 PF00580 UvrD/REP helicase N-terminal domain PJH08_05560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PJH08_05565 PF01025 GrpE PJH08_05570 PF00684 DnaJ central domain PJH08_05570 PF01556 DnaJ C terminal domain PJH08_05570 PF00226 DnaJ domain PJH08_05580 PF06434 Aconitate hydratase 2 N-terminus PJH08_05580 PF00330 Aconitase family (aconitate hydratase) PJH08_05580 PF11791 Aconitate B N-terminal domain PJH08_05585 PF00330 Aconitase family (aconitate hydratase) PJH08_05585 PF00694 Aconitase C-terminal domain PJH08_05600 PF02769 AIR synthase related protein, C-terminal domain PJH08_05600 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PJH08_05600 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PJH08_05620 PF01202 Shikimate kinase PJH08_05625 PF00156 Phosphoribosyl transferase domain PJH08_05630 PF01479 S4 domain PJH08_05645 PF02779 Transketolase, pyrimidine binding domain PJH08_05645 PF02780 Transketolase, C-terminal domain PJH08_05650 PF02545 Maf-like protein PJH08_05660 PF01668 SmpB protein PJH08_05665 PF03922 OmpW family PJH08_05670 PF07724 AAA domain (Cdc48 subfamily) PJH08_05670 PF00004 ATPase family associated with various cellular activities (AAA) PJH08_05670 PF17871 AAA lid domain PJH08_05670 PF02861 Clp amino terminal domain, pathogenicity island component PJH08_05670 PF10431 C-terminal, D2-small domain, of ClpB protein PJH08_05690 PF00464 Serine hydroxymethyltransferase PJH08_05695 PF00999 Sodium/hydrogen exchanger family PJH08_05720 PF00270 DEAD/DEAH box helicase PJH08_05720 PF00271 Helicase conserved C-terminal domain PJH08_05725 PF00313 'Cold-shock' DNA-binding domain PJH08_05730 PF00313 'Cold-shock' DNA-binding domain PJH08_05740 PF00313 'Cold-shock' DNA-binding domain PJH08_05750 PF00465 Iron-containing alcohol dehydrogenase PJH08_05760 PF08359 YsiA-like protein, C-terminal region PJH08_05760 PF00440 Bacterial regulatory proteins, tetR family PJH08_05770 PF07730 Histidine kinase PJH08_05775 PF00072 Response regulator receiver domain PJH08_05775 PF00196 Bacterial regulatory proteins, luxR family PJH08_05790 PF00313 'Cold-shock' DNA-binding domain PJH08_05795 PF13404 AsnC-type helix-turn-helix domain PJH08_05795 PF01037 Lrp/AsnC ligand binding domain PJH08_05800 PF01370 NAD dependent epimerase/dehydratase family PJH08_05830 PF00849 RNA pseudouridylate synthase PJH08_05835 PF01037 Lrp/AsnC ligand binding domain PJH08_05855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PJH08_05855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PJH08_05855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PJH08_05855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PJH08_05860 PF00575 S1 RNA binding domain PJH08_05865 PF01205 Uncharacterized protein family UPF0029 PJH08_05865 PF09186 Domain of unknown function (DUF1949) PJH08_05875 PF13419 Haloacid dehalogenase-like hydrolase PJH08_05880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PJH08_05880 PF01872 RibD C-terminal domain PJH08_05890 PF05175 Methyltransferase small domain PJH08_05890 PF17827 PrmC N-terminal domain PJH08_05905 PF02634 FdhD/NarQ family PJH08_05910 PF00384 Molybdopterin oxidoreductase PJH08_05910 PF01568 Molydopterin dinucleotide binding domain PJH08_05925 PF00849 RNA pseudouridylate synthase PJH08_05930 PF00004 ATPase family associated with various cellular activities (AAA) PJH08_05930 PF05362 Lon protease (S16) C-terminal proteolytic domain PJH08_05930 PF02190 ATP-dependent protease La (LON) substrate-binding domain PJH08_05945 PF01180 Dihydroorotate dehydrogenase PJH08_05950 PF03483 B3/4 domain PJH08_05950 PF03484 tRNA synthetase B5 domain PJH08_05950 PF03147 Ferredoxin-fold anticodon binding domain PJH08_05950 PF01588 Putative tRNA binding domain PJH08_05950 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PJH08_05955 PF04231 Endonuclease I PJH08_05975 PF05343 M42 glutamyl aminopeptidase PJH08_06010 PF00005 ABC transporter PJH08_06010 PF12848 ABC transporter PJH08_06020 PF00271 Helicase conserved C-terminal domain PJH08_06020 PF00270 DEAD/DEAH box helicase PJH08_06050 PF00873 AcrB/AcrD/AcrF family PJH08_06065 PF03061 Thioesterase superfamily PJH08_06085 PF08328 Adenylosuccinate lyase C-terminal PJH08_06085 PF00206 Lyase PJH08_06100 PF07715 TonB-dependent Receptor Plug Domain PJH08_06100 PF00593 TonB dependent receptor PJH08_06105 PF12169 DNA polymerase III subunits gamma and tau domain III PJH08_06160 PF00375 Sodium:dicarboxylate symporter family PJH08_06175 PF00924 Mechanosensitive ion channel PJH08_06175 PF05552 Conserved TM helix PJH08_06180 PF00521 DNA gyrase/topoisomerase IV, subunit A PJH08_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_06190 PF00986 DNA gyrase B subunit, carboxyl terminus PJH08_06190 PF01751 Toprim domain PJH08_06190 PF00204 DNA gyrase B PJH08_06195 PF03264 NapC/NirT cytochrome c family, N-terminal region PJH08_06200 PF02335 Cytochrome c552 PJH08_06205 PF05140 ResB-like family PJH08_06205 PF01578 Cytochrome C assembly protein PJH08_06210 PF00571 CBS domain PJH08_06210 PF00478 IMP dehydrogenase / GMP reductase domain PJH08_06270 PF02424 ApbE family PJH08_06310 PF00005 ABC transporter PJH08_06310 PF08402 TOBE domain PJH08_06315 PF00528 Binding-protein-dependent transport system inner membrane component PJH08_06350 PF13416 Bacterial extracellular solute-binding protein PJH08_06380 PF00149 Calcineurin-like phosphoesterase PJH08_06390 PF00682 HMGL-like PJH08_06390 PF08502 LeuA allosteric (dimerisation) domain PJH08_06395 PF08264 Anticodon-binding domain of tRNA PJH08_06395 PF00133 tRNA synthetases class I (I, L, M and V) PJH08_06395 PF10458 Valyl tRNA synthetase tRNA binding arm PJH08_06410 PF00155 Aminotransferase class I and II PJH08_06415 PF01565 FAD binding domain PJH08_06415 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PJH08_06420 PF00230 Major intrinsic protein PJH08_06440 PF04055 Radical SAM superfamily PJH08_06445 PF00291 Pyridoxal-phosphate dependent enzyme PJH08_06445 PF00571 CBS domain PJH08_06455 PF02687 FtsX-like permease family PJH08_06455 PF12704 MacB-like periplasmic core domain PJH08_06460 PF07075 Protein of unknown function (DUF1343) PJH08_06475 PF00270 DEAD/DEAH box helicase PJH08_06475 PF00271 Helicase conserved C-terminal domain PJH08_06475 PF17191 RecG wedge domain PJH08_06485 PF01189 16S rRNA methyltransferase RsmB/F PJH08_06485 PF01029 NusB family PJH08_06495 PF03458 UPF0126 domain PJH08_06500 PF00270 DEAD/DEAH box helicase PJH08_06500 PF00271 Helicase conserved C-terminal domain PJH08_06515 PF01926 50S ribosome-binding GTPase PJH08_06515 PF06071 Protein of unknown function (DUF933) PJH08_06530 PF00593 TonB dependent receptor PJH08_06530 PF07715 TonB-dependent Receptor Plug Domain PJH08_06535 PF02978 Signal peptide binding domain PJH08_06535 PF00448 SRP54-type protein, GTPase domain PJH08_06535 PF02881 SRP54-type protein, helical bundle domain PJH08_06540 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PJH08_06540 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PJH08_06545 PF03575 Peptidase family S51 PJH08_06580 PF07726 ATPase family associated with various cellular activities (AAA) PJH08_06580 PF17863 AAA lid domain PJH08_06585 PF00639 PPIC-type PPIASE domain PJH08_06585 PF09312 SurA N-terminal domain PJH08_06605 PF00270 DEAD/DEAH box helicase PJH08_06605 PF09382 RQC domain PJH08_06605 PF00570 HRDC domain PJH08_06605 PF16124 RecQ zinc-binding PJH08_06605 PF00271 Helicase conserved C-terminal domain PJH08_06610 PF00551 Formyl transferase PJH08_06610 PF02911 Formyl transferase, C-terminal domain PJH08_06615 PF00216 Bacterial DNA-binding protein PJH08_06620 PF05360 yiaA/B two helix domain PJH08_06625 PF02525 Flavodoxin-like fold PJH08_06630 PF01170 Putative RNA methylase family UPF0020 PJH08_06630 PF02926 THUMP domain PJH08_06650 PF04055 Radical SAM superfamily PJH08_06655 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PJH08_06670 PF01702 Queuine tRNA-ribosyltransferase PJH08_06675 PF00849 RNA pseudouridylate synthase PJH08_06675 PF01479 S4 domain PJH08_06700 PF02224 Cytidylate kinase PJH08_06705 PF01479 S4 domain PJH08_06705 PF00849 RNA pseudouridylate synthase PJH08_06715 PF07478 D-ala D-ala ligase C-terminus PJH08_06715 PF01820 D-ala D-ala ligase N-terminus PJH08_06720 PF01467 Cytidylyltransferase-like PJH08_06725 PF01238 Phosphomannose isomerase type I PJH08_06735 PF00072 Response regulator receiver domain PJH08_06735 PF00486 Transcriptional regulatory protein, C terminal PJH08_06780 PF00072 Response regulator receiver domain PJH08_06780 PF04397 LytTr DNA-binding domain PJH08_06790 PF07689 KaiB domain PJH08_06790 PF00512 His Kinase A (phospho-acceptor) domain PJH08_06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_06810 PF00072 Response regulator receiver domain PJH08_06825 PF02910 Fumarate reductase flavoprotein C-term PJH08_06825 PF00890 FAD binding domain PJH08_06830 PF02445 Quinolinate synthetase A protein PJH08_06855 PF00384 Molybdopterin oxidoreductase PJH08_06855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PJH08_06855 PF01568 Molydopterin dinucleotide binding domain PJH08_06870 PF00037 4Fe-4S binding domain PJH08_06870 PF13247 4Fe-4S dicluster domain PJH08_06885 PF02810 SEC-C motif PJH08_06890 PF00742 Homoserine dehydrogenase PJH08_06890 PF13840 ACT domain PJH08_06890 PF01842 ACT domain PJH08_06890 PF00696 Amino acid kinase family PJH08_06890 PF03447 Homoserine dehydrogenase, NAD binding domain PJH08_06895 PF00288 GHMP kinases N terminal domain PJH08_06895 PF08544 GHMP kinases C terminal PJH08_06900 PF00291 Pyridoxal-phosphate dependent enzyme PJH08_06900 PF14821 Threonine synthase N terminus PJH08_06905 PF00501 AMP-binding enzyme PJH08_06910 PF00849 RNA pseudouridylate synthase PJH08_06915 PF11700 Vacuole effluxer Atg22 like PJH08_06930 PF00593 TonB dependent receptor PJH08_06930 PF07715 TonB-dependent Receptor Plug Domain PJH08_06935 PF00037 4Fe-4S binding domain PJH08_06945 PF00266 Aminotransferase class-V PJH08_06950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PJH08_06950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PJH08_06950 PF01842 ACT domain PJH08_06960 PF01168 Alanine racemase, N-terminal domain PJH08_06965 PF01541 GIY-YIG catalytic domain PJH08_06965 PF00929 Exonuclease PJH08_06970 PF00027 Cyclic nucleotide-binding domain PJH08_06970 PF00520 Ion transport protein PJH08_06995 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PJH08_06995 PF01502 Phosphoribosyl-AMP cyclohydrolase PJH08_07000 PF00977 Histidine biosynthesis protein PJH08_07005 PF00977 Histidine biosynthesis protein PJH08_07010 PF00117 Glutamine amidotransferase class-I PJH08_07015 PF00475 Imidazoleglycerol-phosphate dehydratase PJH08_07020 PF00155 Aminotransferase class I and II PJH08_07025 PF00815 Histidinol dehydrogenase PJH08_07030 PF01634 ATP phosphoribosyltransferase PJH08_07030 PF08029 HisG, C-terminal domain PJH08_07035 PF00009 Elongation factor Tu GTP binding domain PJH08_07035 PF03144 Elongation factor Tu domain 2 PJH08_07035 PF00679 Elongation factor G C-terminus PJH08_07040 PF01619 Proline dehydrogenase PJH08_07045 PF01761 3-dehydroquinate synthase PJH08_07050 PF01979 Amidohydrolase family PJH08_07065 PF00491 Arginase family PJH08_07100 PF04397 LytTr DNA-binding domain PJH08_07100 PF00072 Response regulator receiver domain PJH08_07105 PF02743 Cache domain PJH08_07105 PF00672 HAMP domain PJH08_07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_07105 PF06580 Histidine kinase PJH08_07125 PF03462 PCRF domain PJH08_07125 PF00472 RF-1 domain PJH08_07130 PF03960 ArsC family PJH08_07140 PF02709 N-terminal domain of galactosyltransferase PJH08_07140 PF00535 Glycosyl transferase family 2 PJH08_07155 PF02463 RecF/RecN/SMC N terminal domain PJH08_07170 PF02441 Flavoprotein PJH08_07170 PF04127 DNA / pantothenate metabolism flavoprotein PJH08_07185 PF00210 Ferritin-like domain PJH08_07190 PF00701 Dihydrodipicolinate synthetase family PJH08_07210 PF13495 Phage integrase, N-terminal SAM-like domain PJH08_07210 PF00589 Phage integrase family PJH08_07235 PF01810 LysE type translocator PJH08_07320 PF13333 Integrase core domain PJH08_07320 PF00665 Integrase core domain PJH08_07320 PF13276 HTH-like domain PJH08_07360 PF13276 HTH-like domain PJH08_07360 PF00665 Integrase core domain PJH08_07360 PF13333 Integrase core domain PJH08_07375 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PJH08_07380 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system PJH08_07390 PF10137 Predicted nucleotide-binding protein containing TIR-like domain PJH08_07445 PF13276 HTH-like domain PJH08_07445 PF00665 Integrase core domain PJH08_07445 PF13333 Integrase core domain PJH08_07470 PF13276 HTH-like domain PJH08_07470 PF00665 Integrase core domain PJH08_07470 PF13333 Integrase core domain PJH08_07510 PF00005 ABC transporter PJH08_07525 PF13333 Integrase core domain PJH08_07525 PF00665 Integrase core domain PJH08_07525 PF13276 HTH-like domain PJH08_07540 PF05973 Phage derived protein Gp49-like (DUF891) PJH08_07545 PF01381 Helix-turn-helix PJH08_07555 PF13333 Integrase core domain PJH08_07555 PF13276 HTH-like domain PJH08_07555 PF00665 Integrase core domain PJH08_07610 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07615 PF05970 PIF1-like helicase PJH08_07615 PF02689 Helicase PJH08_07635 PF13276 HTH-like domain PJH08_07635 PF00665 Integrase core domain PJH08_07635 PF13333 Integrase core domain PJH08_07640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07650 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07690 PF00665 Integrase core domain PJH08_07690 PF13333 Integrase core domain PJH08_07690 PF13276 HTH-like domain PJH08_07700 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07705 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PJH08_07710 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system PJH08_07715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07770 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07775 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PJH08_07780 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system PJH08_07795 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PJH08_07810 PF13333 Integrase core domain PJH08_07810 PF00665 Integrase core domain PJH08_07810 PF13276 HTH-like domain PJH08_07830 PF00665 Integrase core domain PJH08_07830 PF13333 Integrase core domain PJH08_07830 PF13276 HTH-like domain PJH08_07860 PF04986 Putative transposase PJH08_07860 PF14319 Transposase zinc-binding domain PJH08_07880 PF00871 Acetokinase family PJH08_07885 PF01515 Phosphate acetyl/butaryl transferase PJH08_07910 PF00533 BRCA1 C Terminus (BRCT) domain PJH08_07910 PF03120 NAD-dependent DNA ligase OB-fold domain PJH08_07910 PF01653 NAD-dependent DNA ligase adenylation domain PJH08_07910 PF12826 Helix-hairpin-helix motif PJH08_07910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PJH08_07915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PJH08_07915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PJH08_07920 PF17820 PDZ domain PJH08_07920 PF13180 PDZ domain PJH08_07925 PF01678 Diaminopimelate epimerase PJH08_07935 PF02618 YceG-like family PJH08_07960 PF18496 Collagenase G catalytic helper subdomain PJH08_07960 PF08453 Peptidase family M9 N-terminal PJH08_07960 PF01752 Collagenase PJH08_07970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_07975 PF00308 Bacterial dnaA protein PJH08_07975 PF08299 Bacterial dnaA protein helix-turn-helix PJH08_07975 PF11638 DnaA N-terminal domain PJH08_07980 PF03061 Thioesterase superfamily PJH08_07985 PF01923 Cobalamin adenosyltransferase PJH08_07995 PF07517 SecA DEAD-like domain PJH08_07995 PF07516 SecA Wing and Scaffold domain PJH08_07995 PF01043 SecA preprotein cross-linking domain PJH08_08010 PF03167 Uracil DNA glycosylase superfamily PJH08_08020 PF02652 L-lactate permease PJH08_08025 PF01070 FMN-dependent dehydrogenase PJH08_08030 PF00488 MutS domain V PJH08_08030 PF01713 Smr domain PJH08_08040 PF01554 MatE PJH08_08045 PF08534 Redoxin PJH08_08055 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PJH08_08055 PF17854 FtsK alpha domain PJH08_08055 PF09397 Ftsk gamma domain PJH08_08055 PF01580 FtsK/SpoIIIE family PJH08_08070 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PJH08_08070 PF00925 GTP cyclohydrolase II PJH08_08075 PF03060 Nitronate monooxygenase PJH08_08095 PF00085 Thioredoxin PJH08_08105 PF05746 DALR anticodon binding domain PJH08_08105 PF00750 tRNA synthetases class I (R) PJH08_08105 PF03485 Arginyl tRNA synthetase N terminal domain PJH08_08110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PJH08_08110 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_08125 PF17440 Thiol-activated cytolysin beta sandwich domain PJH08_08125 PF01289 Thiol-activated cytolysin PJH08_08165 PF12848 ABC transporter PJH08_08165 PF00005 ABC transporter PJH08_08175 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_08175 PF14602 Hexapeptide repeat of succinyl-transferase PJH08_08175 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PJH08_08180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PJH08_08180 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_08185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PJH08_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_08190 PF05726 Pirin C-terminal cupin domain PJH08_08190 PF02678 Pirin PJH08_08220 PF01039 Carboxyl transferase domain PJH08_08230 PF01709 Transcriptional regulator PJH08_08240 PF00253 Ribosomal protein S14p/S29e PJH08_08245 PF00281 Ribosomal protein L5 PJH08_08245 PF00673 ribosomal L5P family C-terminus PJH08_08250 PF00467 KOW motif PJH08_08250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PJH08_08255 PF00238 Ribosomal protein L14p/L23e PJH08_08260 PF00366 Ribosomal protein S17 PJH08_08265 PF00831 Ribosomal L29 protein PJH08_08270 PF00252 Ribosomal protein L16p/L10e PJH08_08275 PF07650 KH domain PJH08_08275 PF00189 Ribosomal protein S3, C-terminal domain PJH08_08280 PF00237 Ribosomal protein L22p/L17e PJH08_08285 PF00203 Ribosomal protein S19 PJH08_08290 PF00181 Ribosomal Proteins L2, RNA binding domain PJH08_08290 PF03947 Ribosomal Proteins L2, C-terminal domain PJH08_08295 PF00276 Ribosomal protein L23 PJH08_08300 PF00573 Ribosomal protein L4/L1 family PJH08_08305 PF00297 Ribosomal protein L3 PJH08_08310 PF00338 Ribosomal protein S10p/S20e PJH08_08315 PF03144 Elongation factor Tu domain 2 PJH08_08315 PF14492 Elongation Factor G, domain II PJH08_08315 PF00679 Elongation factor G C-terminus PJH08_08315 PF00009 Elongation factor Tu GTP binding domain PJH08_08315 PF03764 Elongation factor G, domain IV PJH08_08320 PF00177 Ribosomal protein S7p/S5e PJH08_08325 PF00164 Ribosomal protein S12/S23 PJH08_08330 PF07715 TonB-dependent Receptor Plug Domain PJH08_08330 PF00593 TonB dependent receptor PJH08_08340 PF08032 RNA 2'-O ribose methyltransferase substrate binding PJH08_08340 PF00588 SpoU rRNA Methylase family PJH08_08345 PF01694 Rhomboid family PJH08_08350 PF16193 AAA C-terminal domain PJH08_08350 PF12002 MgsA AAA+ ATPase C terminal PJH08_08350 PF00004 ATPase family associated with various cellular activities (AAA) PJH08_08365 PF04002 RadC-like JAB domain PJH08_08370 PF02080 TrkA-C domain PJH08_08370 PF02254 TrkA-N domain PJH08_08395 PF00005 ABC transporter PJH08_08395 PF00664 ABC transporter transmembrane region PJH08_08420 PF06052 3-hydroxyanthranilic acid dioxygenase PJH08_08435 PF01494 FAD binding domain PJH08_08440 PF00266 Aminotransferase class-V PJH08_08450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PJH08_08450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PJH08_08460 PF02347 Glycine cleavage system P-protein PJH08_08465 PF00282 Pyridoxal-dependent decarboxylase conserved domain PJH08_08475 PF01389 OmpA-like transmembrane domain PJH08_08475 PF00691 OmpA family PJH08_08490 PF05175 Methyltransferase small domain PJH08_08495 PF01645 Conserved region in glutamate synthase PJH08_08500 PF01197 Ribosomal protein L31 PJH08_08530 PF00483 Nucleotidyl transferase PJH08_08530 PF01050 Mannose-6-phosphate isomerase PJH08_08545 PF16177 Acetyl-coenzyme A synthetase N-terminus PJH08_08545 PF13193 AMP-binding enzyme C-terminal domain PJH08_08545 PF00501 AMP-binding enzyme PJH08_08550 PF12833 Helix-turn-helix domain PJH08_08550 PF02311 AraC-like ligand binding domain PJH08_08560 PF03150 Di-haem cytochrome c peroxidase PJH08_08570 PF03471 Transporter associated domain PJH08_08570 PF03741 Integral membrane protein TerC family PJH08_08575 PF00210 Ferritin-like domain PJH08_08580 PF03466 LysR substrate binding domain PJH08_08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJH08_08585 PF01740 STAS domain PJH08_08585 PF00916 Sulfate permease family PJH08_08590 PF00156 Phosphoribosyl transferase domain PJH08_08595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PJH08_08595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PJH08_08610 PF12706 Beta-lactamase superfamily domain PJH08_08625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJH08_08625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJH08_08630 PF00183 Hsp90 protein PJH08_08660 PF02350 UDP-N-acetylglucosamine 2-epimerase PJH08_08715 PF04452 RNA methyltransferase PJH08_08730 PF00144 Beta-lactamase PJH08_08735 PF00933 Glycosyl hydrolase family 3 N terminal domain PJH08_08735 PF01915 Glycosyl hydrolase family 3 C-terminal domain PJH08_08790 PF00012 Hsp70 protein PJH08_08795 PF00156 Phosphoribosyl transferase domain PJH08_08805 PF02237 Biotin protein ligase C terminal domain PJH08_08805 PF03099 Biotin/lipoate A/B protein ligase family PJH08_08815 PF00004 ATPase family associated with various cellular activities (AAA) PJH08_08815 PF17862 AAA+ lid domain PJH08_08815 PF01434 Peptidase family M41 PJH08_08860 PF02913 FAD linked oxidases, C-terminal domain PJH08_08860 PF01565 FAD binding domain PJH08_08860 PF13183 4Fe-4S dicluster domain PJH08_08880 PF01225 Mur ligase family, catalytic domain PJH08_08880 PF02875 Mur ligase family, glutamate ligase domain PJH08_08880 PF08245 Mur ligase middle domain PJH08_08885 PF00465 Iron-containing alcohol dehydrogenase PJH08_08895 PF00593 TonB dependent receptor PJH08_08895 PF07715 TonB-dependent Receptor Plug Domain PJH08_08910 PF00082 Subtilase family PJH08_08915 PF04389 Peptidase family M28 PJH08_08920 PF00793 DAHP synthetase I family PJH08_08930 PF02646 RmuC family PJH08_08935 PF12843 Putative quorum-sensing-regulated virulence factor PJH08_08955 PF03462 PCRF domain PJH08_08955 PF00472 RF-1 domain PJH08_09010 PF00582 Universal stress protein family PJH08_09025 PF13746 4Fe-4S dicluster domain PJH08_09025 PF12801 4Fe-4S binding domain PJH08_09025 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase PJH08_09030 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP PJH08_09030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PJH08_09030 PF00034 Cytochrome c PJH08_09040 PF00115 Cytochrome C and Quinol oxidase polypeptide I PJH08_09055 PF01694 Rhomboid family PJH08_09060 PF00520 Ion transport protein PJH08_09060 PF00027 Cyclic nucleotide-binding domain PJH08_09070 PF02675 S-adenosylmethionine decarboxylase PJH08_09095 PF04012 PspA/IM30 family PJH08_09105 PF01381 Helix-turn-helix PJH08_09115 PF06969 HemN C-terminal domain PJH08_09115 PF04055 Radical SAM superfamily PJH08_09120 PF01791 DeoC/LacD family aldolase PJH08_09130 PF00403 Heavy-metal-associated domain PJH08_09145 PF04997 RNA polymerase Rpb1, domain 1 PJH08_09145 PF04983 RNA polymerase Rpb1, domain 3 PJH08_09145 PF05000 RNA polymerase Rpb1, domain 4 PJH08_09145 PF04998 RNA polymerase Rpb1, domain 5 PJH08_09145 PF00623 RNA polymerase Rpb1, domain 2 PJH08_09150 PF04563 RNA polymerase beta subunit PJH08_09150 PF04561 RNA polymerase Rpb2, domain 2 PJH08_09150 PF04565 RNA polymerase Rpb2, domain 3 PJH08_09150 PF10385 RNA polymerase beta subunit external 1 domain PJH08_09150 PF00562 RNA polymerase Rpb2, domain 6 PJH08_09150 PF04560 RNA polymerase Rpb2, domain 7 PJH08_09155 PF00542 Ribosomal protein L7/L12 C-terminal domain PJH08_09155 PF16320 Ribosomal protein L7/L12 dimerisation domain PJH08_09160 PF00466 Ribosomal protein L10 PJH08_09165 PF00687 Ribosomal protein L1p/L10e family PJH08_09170 PF03946 Ribosomal protein L11, N-terminal domain PJH08_09170 PF00298 Ribosomal protein L11, RNA binding domain PJH08_09175 PF00467 KOW motif PJH08_09175 PF02357 Transcription termination factor nusG PJH08_09190 PF00009 Elongation factor Tu GTP binding domain PJH08_09190 PF03144 Elongation factor Tu domain 2 PJH08_09190 PF03143 Elongation factor Tu C-terminal domain PJH08_09215 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PJH08_09215 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus PJH08_09220 PF00589 Phage integrase family PJH08_09220 PF02899 Phage integrase, N-terminal SAM-like domain PJH08_09225 PF01165 Ribosomal protein S21 PJH08_09230 PF02770 Acyl-CoA dehydrogenase, middle domain PJH08_09230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJH08_09230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJH08_09240 PF01235 Sodium:alanine symporter family PJH08_09245 PF04321 RmlD substrate binding domain PJH08_09260 PF17755 UvrA DNA-binding domain PJH08_09260 PF17760 UvrA interaction domain PJH08_09275 PF03641 Possible lysine decarboxylase PJH08_09280 PF02779 Transketolase, pyrimidine binding domain PJH08_09280 PF02780 Transketolase, C-terminal domain PJH08_09290 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PJH08_09290 PF00156 Phosphoribosyl transferase domain PJH08_09310 PF09297 NADH pyrophosphatase zinc ribbon domain PJH08_09310 PF00293 NUDIX domain PJH08_09315 PF00881 Nitroreductase family PJH08_09320 PF00474 Sodium:solute symporter family PJH08_09350 PF10417 C-terminal domain of 1-Cys peroxiredoxin PJH08_09350 PF00578 AhpC/TSA family PJH08_09355 PF00158 Sigma-54 interaction domain PJH08_09355 PF00072 Response regulator receiver domain PJH08_09355 PF02954 Bacterial regulatory protein, Fis family PJH08_09360 PF12794 Mechanosensitive ion channel inner membrane domain 1 PJH08_09360 PF12795 Mechanosensitive ion channel porin domain PJH08_09360 PF00924 Mechanosensitive ion channel PJH08_09370 PF00005 ABC transporter PJH08_09370 PF13732 Domain of unknown function (DUF4162) PJH08_09380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PJH08_09380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PJH08_09380 PF00378 Enoyl-CoA hydratase/isomerase PJH08_09385 PF02803 Thiolase, C-terminal domain PJH08_09385 PF00108 Thiolase, N-terminal domain PJH08_09390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJH08_09390 PF02770 Acyl-CoA dehydrogenase, middle domain PJH08_09390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJH08_09400 PF00586 AIR synthase related protein, N-terminal domain PJH08_09400 PF02769 AIR synthase related protein, C-terminal domain PJH08_09405 PF00120 Glutamine synthetase, catalytic domain PJH08_09405 PF18318 Glutamine synthetase C-terminal domain PJH08_09405 PF12437 Glutamine synthetase type III N terminal PJH08_09410 PF00120 Glutamine synthetase, catalytic domain PJH08_09410 PF03951 Glutamine synthetase, beta-Grasp domain PJH08_09425 PF01699 Sodium/calcium exchanger protein PJH08_09460 PF02617 ATP-dependent Clp protease adaptor protein ClpS PJH08_09470 PF00121 Triosephosphate isomerase PJH08_09480 PF00578 AhpC/TSA family PJH08_09490 PF00528 Binding-protein-dependent transport system inner membrane component PJH08_09495 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PJH08_09505 PF07715 TonB-dependent Receptor Plug Domain PJH08_09505 PF00593 TonB dependent receptor PJH08_09510 PF04397 LytTr DNA-binding domain PJH08_09510 PF00072 Response regulator receiver domain PJH08_09530 PF17391 Urocanase N-terminal domain PJH08_09530 PF17392 Urocanase C-terminal domain PJH08_09530 PF01175 Urocanase Rossmann-like domain PJH08_09535 PF00221 Aromatic amino acid lyase PJH08_09540 PF03466 LysR substrate binding domain PJH08_09540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJH08_09550 PF02310 B12 binding domain PJH08_09550 PF01642 Methylmalonyl-CoA mutase PJH08_09565 PF00270 DEAD/DEAH box helicase PJH08_09565 PF00271 Helicase conserved C-terminal domain PJH08_09565 PF00570 HRDC domain PJH08_09565 PF16124 RecQ zinc-binding PJH08_09565 PF09382 RQC domain PJH08_09570 PF00290 Tryptophan synthase alpha chain PJH08_09575 PF00291 Pyridoxal-phosphate dependent enzyme PJH08_09580 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PJH08_09585 PF00218 Indole-3-glycerol phosphate synthase PJH08_09590 PF00591 Glycosyl transferase family, a/b domain PJH08_09590 PF02885 Glycosyl transferase family, helical bundle domain PJH08_09595 PF00117 Glutamine amidotransferase class-I PJH08_09600 PF04715 Anthranilate synthase component I, N terminal region PJH08_09600 PF00425 chorismate binding enzyme PJH08_09605 PF00733 Asparagine synthase PJH08_09605 PF13537 Glutamine amidotransferase domain PJH08_09610 PF02785 Biotin carboxylase C-terminal domain PJH08_09610 PF00289 Biotin carboxylase, N-terminal domain PJH08_09610 PF00364 Biotin-requiring enzyme PJH08_09610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PJH08_09610 PF02436 Conserved carboxylase domain PJH08_09610 PF00682 HMGL-like PJH08_09615 PF00986 DNA gyrase B subunit, carboxyl terminus PJH08_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_09615 PF01751 Toprim domain PJH08_09615 PF00204 DNA gyrase B PJH08_09625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PJH08_09625 PF00056 lactate/malate dehydrogenase, NAD binding domain PJH08_09630 PF00005 ABC transporter PJH08_09645 PF01979 Amidohydrolase family PJH08_09645 PF13382 Adenine deaminase C-terminal domain PJH08_09650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PJH08_09650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJH08_09655 PF04542 Sigma-70 region 2 PJH08_09655 PF08281 Sigma-70, region 4 PJH08_09670 PF00005 ABC transporter PJH08_09675 PF02405 Permease MlaE PJH08_09680 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase PJH08_09690 PF18766 SWI2/SNF2 ATPase PJH08_09690 PF11867 Domain of unknown function (DUF3387) PJH08_09690 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PJH08_09710 PF12161 HsdM N-terminal domain PJH08_09710 PF02384 N-6 DNA Methylase PJH08_09740 PF01966 HD domain PJH08_09740 PF07697 7TM-HD extracellular PJH08_09740 PF07698 7TM receptor with intracellular HD hydrolase PJH08_09745 PF00108 Thiolase, N-terminal domain PJH08_09745 PF02803 Thiolase, C-terminal domain PJH08_09750 PF00877 NlpC/P60 family PJH08_09760 PF00521 DNA gyrase/topoisomerase IV, subunit A PJH08_09760 PF03989 DNA gyrase C-terminal domain, beta-propeller PJH08_09765 PF02861 Clp amino terminal domain, pathogenicity island component PJH08_09765 PF17871 AAA lid domain PJH08_09765 PF00004 ATPase family associated with various cellular activities (AAA) PJH08_09765 PF10431 C-terminal, D2-small domain, of ClpB protein PJH08_09765 PF07724 AAA domain (Cdc48 subfamily) PJH08_09770 PF08534 Redoxin PJH08_09795 PF04286 Protein of unknown function (DUF445) PJH08_09800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_09800 PF07568 Histidine kinase PJH08_09800 PF12282 Signal transduction histidine kinase PJH08_09805 PF04397 LytTr DNA-binding domain PJH08_09805 PF00072 Response regulator receiver domain PJH08_09810 PF01427 D-ala-D-ala dipeptidase PJH08_09820 PF00676 Dehydrogenase E1 component PJH08_09825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PJH08_09825 PF00364 Biotin-requiring enzyme PJH08_09825 PF02817 e3 binding domain PJH08_09845 PF02424 ApbE family PJH08_09850 PF14870 Photosynthesis system II assembly factor YCF48 PJH08_09870 PF01264 Chorismate synthase PJH08_09930 PF08497 Radical SAM N-terminal PJH08_09930 PF04055 Radical SAM superfamily PJH08_09930 PF11842 Domain of unknown function (DUF3362) PJH08_09955 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PJH08_09990 PF00512 His Kinase A (phospho-acceptor) domain PJH08_09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_10000 PF01272 Transcription elongation factor, GreA/GreB, C-term PJH08_10000 PF03449 Transcription elongation factor, N-terminal PJH08_10010 PF02222 ATP-grasp domain PJH08_10010 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PJH08_10025 PF00731 AIR carboxylase PJH08_10030 PF01432 Peptidase family M3 PJH08_10040 PF07715 TonB-dependent Receptor Plug Domain PJH08_10040 PF00593 TonB dependent receptor PJH08_10080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PJH08_10080 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_10095 PF01595 Cyclin M transmembrane N-terminal domain PJH08_10095 PF03471 Transporter associated domain PJH08_10095 PF00571 CBS domain PJH08_10120 PF03309 Type III pantothenate kinase PJH08_10150 PF00132 Bacterial transferase hexapeptide (six repeats) PJH08_10160 PF01476 LysM domain PJH08_10160 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PJH08_10175 PF12848 ABC transporter PJH08_10175 PF16326 ABC transporter C-terminal domain PJH08_10175 PF00005 ABC transporter PJH08_10205 PF03781 Sulfatase-modifying factor enzyme 1 PJH08_10215 PF01131 DNA topoisomerase PJH08_10215 PF01751 Toprim domain PJH08_10215 PF13368 Topoisomerase C-terminal repeat PJH08_10225 PF01590 GAF domain PJH08_10225 PF02954 Bacterial regulatory protein, Fis family PJH08_10225 PF00158 Sigma-54 interaction domain PJH08_10240 PF00166 Chaperonin 10 Kd subunit PJH08_10245 PF00118 TCP-1/cpn60 chaperonin family PJH08_10260 PF04055 Radical SAM superfamily PJH08_10265 PF02547 Queuosine biosynthesis protein PJH08_10270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PJH08_10285 PF07690 Major Facilitator Superfamily PJH08_10295 PF04055 Radical SAM superfamily PJH08_10295 PF06969 HemN C-terminal domain PJH08_10300 PF02075 Crossover junction endodeoxyribonuclease RuvC PJH08_10305 PF13382 Adenine deaminase C-terminal domain PJH08_10305 PF01979 Amidohydrolase family PJH08_10310 PF01293 Phosphoenolpyruvate carboxykinase PJH08_10315 PF04241 Protein of unknown function (DUF423) PJH08_10340 PF01654 Cytochrome bd terminal oxidase subunit I PJH08_10345 PF02322 Cytochrome bd terminal oxidase subunit II PJH08_10355 PF00561 alpha/beta hydrolase fold PJH08_10360 PF05175 Methyltransferase small domain PJH08_10370 PF01266 FAD dependent oxidoreductase PJH08_10370 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PJH08_10375 PF01063 Amino-transferase class IV PJH08_10405 PF13673 Acetyltransferase (GNAT) domain PJH08_10405 PF13302 Acetyltransferase (GNAT) domain PJH08_10405 PF03352 Methyladenine glycosylase PJH08_10405 PF00117 Glutamine amidotransferase class-I PJH08_10405 PF00958 GMP synthase C terminal domain PJH08_10410 PF01343 Peptidase family S49 PJH08_10420 PF02773 S-adenosylmethionine synthetase, C-terminal domain PJH08_10420 PF02772 S-adenosylmethionine synthetase, central domain PJH08_10420 PF00438 S-adenosylmethionine synthetase, N-terminal domain PJH08_10425 PF00085 Thioredoxin PJH08_10430 PF01433 Peptidase family M1 domain PJH08_10430 PF11838 ERAP1-like C-terminal domain PJH08_10475 PF02824 TGS domain PJH08_10475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PJH08_10475 PF03129 Anticodon binding domain PJH08_10475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PJH08_10480 PF05198 Translation initiation factor IF-3, N-terminal domain PJH08_10480 PF00707 Translation initiation factor IF-3, C-terminal domain PJH08_10485 PF01632 Ribosomal protein L35 PJH08_10500 PF01268 Formate--tetrahydrofolate ligase PJH08_10505 PF07549 SecD/SecF GG Motif PJH08_10505 PF02355 Protein export membrane protein PJH08_10515 PF01018 GTP1/OBG PJH08_10515 PF01926 50S ribosome-binding GTPase PJH08_10520 PF00877 NlpC/P60 family PJH08_10525 PF02684 Lipid-A-disaccharide synthetase PJH08_10530 PF01975 Survival protein SurE PJH08_10535 PF03572 Peptidase family S41 PJH08_10535 PF17804 Tail specific protease N-terminal domain PJH08_10535 PF11818 C-terminal domain of tail specific protease (DUF3340) PJH08_10535 PF00595 PDZ domain PJH08_10560 PF00152 tRNA synthetases class II (D, K and N) PJH08_10560 PF01336 OB-fold nucleic acid binding domain PJH08_10570 PF03772 Competence protein PJH08_10570 PF13567 Domain of unknown function (DUF4131) PJH08_10570 PF00753 Metallo-beta-lactamase superfamily PJH08_10580 PF00854 POT family PJH08_10585 PF00854 POT family PJH08_10590 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region PJH08_10590 PF00326 Prolyl oligopeptidase family PJH08_10595 PF00368 Hydroxymethylglutaryl-coenzyme A reductase PJH08_10630 PF07715 TonB-dependent Receptor Plug Domain PJH08_10630 PF00593 TonB dependent receptor PJH08_10660 PF00849 RNA pseudouridylate synthase PJH08_10660 PF01479 S4 domain PJH08_10685 PF01808 AICARFT/IMPCHase bienzyme PJH08_10685 PF02142 MGS-like domain PJH08_10695 PF04085 rod shape-determining protein MreC PJH08_10705 PF03717 Penicillin-binding Protein dimerisation domain PJH08_10705 PF00905 Penicillin binding protein transpeptidase domain PJH08_10710 PF01098 Cell cycle protein PJH08_10740 PF00873 AcrB/AcrD/AcrF family PJH08_10760 PF00348 Polyprenyl synthetase PJH08_10780 PF02661 Fic/DOC family PJH08_10785 PF00677 Lumazine binding domain PJH08_10790 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PJH08_10800 PF01783 Ribosomal L32p protein family PJH08_10805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJH08_10805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJH08_10810 PF00364 Biotin-requiring enzyme PJH08_10815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PJH08_10815 PF00289 Biotin carboxylase, N-terminal domain PJH08_10815 PF02785 Biotin carboxylase C-terminal domain PJH08_10820 PF02390 Putative methyltransferase PJH08_10820 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PJH08_10825 PF04143 Sulphur transport PJH08_10840 PF01252 Signal peptidase (SPase) II PJH08_10860 PF08264 Anticodon-binding domain of tRNA PJH08_10860 PF00133 tRNA synthetases class I (I, L, M and V) PJH08_10865 PF00226 DnaJ domain PJH08_10865 PF05099 Tellurite resistance protein TerB PJH08_10870 PF06491 Disulphide isomerase PJH08_10875 PF00717 Peptidase S24-like PJH08_10880 PF13443 Cro/C1-type HTH DNA-binding domain PJH08_10890 PF13404 AsnC-type helix-turn-helix domain PJH08_10890 PF01037 Lrp/AsnC ligand binding domain PJH08_10905 PF03572 Peptidase family S41 PJH08_10905 PF17820 PDZ domain PJH08_10905 PF01471 Putative peptidoglycan binding domain PJH08_10915 PF00665 Integrase core domain PJH08_10915 PF13276 HTH-like domain PJH08_10915 PF13333 Integrase core domain PJH08_10920 PF00072 Response regulator receiver domain PJH08_10920 PF04397 LytTr DNA-binding domain PJH08_10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJH08_10925 PF00512 His Kinase A (phospho-acceptor) domain PJH08_10925 PF07689 KaiB domain PJH08_10935 PF01476 LysM domain PJH08_10935 PF01551 Peptidase family M23 PJH08_10940 PF01467 Cytidylyltransferase-like PJH08_10945 PF00625 Guanylate kinase PJH08_10950 PF08340 Domain of unknown function (DUF1732) PJH08_10950 PF03755 YicC-like family, N-terminal region PJH08_10960 PF04972 BON domain PJH08_10960 PF01476 LysM domain PJH08_10965 PF02769 AIR synthase related protein, C-terminal domain PJH08_10965 PF00586 AIR synthase related protein, N-terminal domain PJH08_10975 PF01521 Iron-sulphur cluster biosynthesis PJH08_10980 PF01458 Uncharacterized protein family (UPF0051) PJH08_10985 PF00005 ABC transporter PJH08_10990 PF01458 Uncharacterized protein family (UPF0051) PJH08_10995 PF05970 PIF1-like helicase PJH08_10995 PF02689 Helicase PJH08_11010 PF00528 Binding-protein-dependent transport system inner membrane component PJH08_11010 PF12911 N-terminal TM domain of oligopeptide transport permease C PJH08_11015 PF00924 Mechanosensitive ion channel PJH08_11020 PF00698 Acyl transferase domain PJH08_11030 PF16363 GDP-mannose 4,6 dehydratase PJH08_11035 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PJH08_11040 PF01037 Lrp/AsnC ligand binding domain PJH08_11045 PF03553 Na+/H+ antiporter family PJH08_11055 PF01351 Ribonuclease HII PJH08_11065 PF03831 PhnA domain PJH08_11065 PF08274 PhnA Zinc-Ribbon PJH08_11070 PF01782 RimM N-terminal domain PJH08_11075 PF00886 Ribosomal protein S16 PJH08_11080 PF00313 'Cold-shock' DNA-binding domain PJH08_11085 PF07733 Bacterial DNA polymerase III alpha NTPase domain PJH08_11085 PF14579 Helix-hairpin-helix motif PJH08_11085 PF02811 PHP domain PJH08_11085 PF01336 OB-fold nucleic acid binding domain PJH08_11085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PJH08_11110 PF02021 Uncharacterised protein family UPF0102 PJH08_11115 PF02016 LD-carboxypeptidase N-terminal domain PJH08_11115 PF17676 LD-carboxypeptidase C-terminal domain PJH08_11125 PF07715 TonB-dependent Receptor Plug Domain PJH08_11125 PF07660 Secretin and TonB N terminus short domain PJH08_11125 PF00593 TonB dependent receptor PJH08_11130 PF09334 tRNA synthetases class I (M) PJH08_11130 PF01588 Putative tRNA binding domain PJH08_11130 PF08264 Anticodon-binding domain of tRNA PJH08_11140 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) PJH08_11140 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PJH08_11145 PF00436 Single-strand binding protein family PJH08_11160 PF00391 PEP-utilising enzyme, mobile domain PJH08_11160 PF00224 Pyruvate kinase, barrel domain PJH08_11160 PF02887 Pyruvate kinase, alpha/beta domain PJH08_11170 PF14622 Ribonuclease-III-like PJH08_11170 PF00035 Double-stranded RNA binding motif PJH08_11175 PF02801 Beta-ketoacyl synthase, C-terminal domain PJH08_11175 PF00109 Beta-ketoacyl synthase, N-terminal domain PJH08_11180 PF00550 Phosphopantetheine attachment site PJH08_11185 PF00551 Formyl transferase PJH08_11190 PF01693 Caulimovirus viroplasmin PJH08_11205 PF00924 Mechanosensitive ion channel PJH08_11205 PF05552 Conserved TM helix PJH08_11210 PF00814 Glycoprotease family PJH08_11225 PF04238 Protein of unknown function (DUF420) PJH08_11230 PF02630 SCO1/SenC PJH08_11250 PF00510 Cytochrome c oxidase subunit III PJH08_11255 PF01040 UbiA prenyltransferase family PJH08_11285 PF01048 Phosphorylase superfamily PJH08_11290 PF07687 Peptidase dimerisation domain PJH08_11290 PF01546 Peptidase family M20/M25/M40 PJH08_11300 PF00005 ABC transporter PJH08_11305 PF00186 Dihydrofolate reductase PJH08_11310 PF00303 Thymidylate synthase PJH08_11315 PF01773 Na+ dependent nucleoside transporter N-terminus PJH08_11315 PF07670 Nucleoside recognition PJH08_11315 PF07662 Na+ dependent nucleoside transporter C-terminus PJH08_11325 PF01012 Electron transfer flavoprotein domain PJH08_11325 PF00766 Electron transfer flavoprotein FAD-binding domain PJH08_11330 PF01012 Electron transfer flavoprotein domain PJH08_11335 PF00364 Biotin-requiring enzyme PJH08_11335 PF02779 Transketolase, pyrimidine binding domain PJH08_11335 PF02780 Transketolase, C-terminal domain PJH08_11345 PF00719 Inorganic pyrophosphatase PJH08_11350 PF00425 chorismate binding enzyme PJH08_11350 PF04715 Anthranilate synthase component I, N terminal region PJH08_11365 PF01171 PP-loop family PJH08_11365 PF11734 TilS substrate C-terminal domain PJH08_11370 PF02683 Cytochrome C biogenesis protein transmembrane region PJH08_11375 PF01078 Magnesium chelatase, subunit ChlI PJH08_11375 PF13335 Magnesium chelatase, subunit ChlI C-terminal PJH08_11380 PF08534 Redoxin PJH08_11385 PF08534 Redoxin PJH08_11395 PF00210 Ferritin-like domain PJH08_11400 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PJH08_11400 PF05221 S-adenosyl-L-homocysteine hydrolase PJH08_11425 PF04973 Nicotinamide mononucleotide transporter PJH08_11435 PF00472 RF-1 domain PJH08_11445 PF18073 Rubredoxin metal binding domain PJH08_11455 PF02261 Aspartate decarboxylase PJH08_11460 PF02569 Pantoate-beta-alanine ligase PJH08_11465 PF08323 Starch synthase catalytic domain PJH08_11465 PF00534 Glycosyl transferases group 1 PJH08_11475 PF01380 SIS domain PJH08_11485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PJH08_11485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PJH08_11490 PF01409 tRNA synthetases class II core domain (F) PJH08_11490 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PJH08_11500 PF01235 Sodium:alanine symporter family PJH08_11520 PF01381 Helix-turn-helix PJH08_11525 PF02938 GAD domain PJH08_11525 PF00152 tRNA synthetases class II (D, K and N) PJH08_11525 PF01336 OB-fold nucleic acid binding domain PJH08_11575 PF00004 ATPase family associated with various cellular activities (AAA) PJH08_11575 PF17866 AAA lid domain PJH08_11580 PF00005 ABC transporter PJH08_11620 PF03009 Glycerophosphoryl diester phosphodiesterase family PJH08_11625 PF03606 C4-dicarboxylate anaerobic carrier PJH08_11635 PF00266 Aminotransferase class-V PJH08_11650 PF02630 SCO1/SenC PJH08_11655 PF17820 PDZ domain PJH08_11655 PF02163 Peptidase family M50 PJH08_11670 PF00696 Amino acid kinase family PJH08_11670 PF01842 ACT domain PJH08_11680 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PJH08_11685 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PJH08_11685 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PJH08_11715 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJH08_11715 PF00085 Thioredoxin PJH08_11720 PF00149 Calcineurin-like phosphoesterase PJH08_11725 PF01367 5'-3' exonuclease, C-terminal SAM fold PJH08_11725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PJH08_11725 PF00476 DNA polymerase family A PJH08_11725 PF01612 3'-5' exonuclease PJH08_11745 PF00156 Phosphoribosyl transferase domain PJH08_11750 PF00398 Ribosomal RNA adenine dimethylase PJH08_11770 PF03129 Anticodon binding domain PJH08_11785 PF07715 TonB-dependent Receptor Plug Domain PJH08_11785 PF00593 TonB dependent receptor PJH08_11790 PF12823 Domain of unknown function (DUF3817) PJH08_11795 PF07715 TonB-dependent Receptor Plug Domain PJH08_11795 PF00593 TonB dependent receptor PJH08_11800 PF11967 Recombination protein O N terminal PJH08_11800 PF02565 Recombination protein O C terminal PJH08_11830 PF00753 Metallo-beta-lactamase superfamily PJH08_11830 PF00581 Rhodanese-like domain PJH08_11835 PF01740 STAS domain PJH08_11835 PF00916 Sulfate permease family PJH08_11840 PF17864 RuvB AAA lid domain PJH08_11840 PF05491 RuvB C-terminal winged helix domain PJH08_11840 PF05496 Holliday junction DNA helicase RuvB P-loop domain PJH08_11845 PF00115 Cytochrome C and Quinol oxidase polypeptide I PJH08_11850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PJH08_11850 PF02790 Cytochrome C oxidase subunit II, transmembrane domain PJH08_11875 PF00037 4Fe-4S binding domain PJH08_11875 PF13247 4Fe-4S dicluster domain PJH08_11890 PF00571 CBS domain PJH08_11890 PF01595 Cyclin M transmembrane N-terminal domain PJH08_11905 PF01883 Iron-sulfur cluster assembly protein PJH08_11910 PF02657 Fe-S metabolism associated domain PJH08_11920 PF00156 Phosphoribosyl transferase domain PJH08_11935 PF07715 TonB-dependent Receptor Plug Domain PJH08_11935 PF00593 TonB dependent receptor PJH08_11955 PF03544 Gram-negative bacterial TonB protein C-terminal PJH08_11960 PF01926 50S ribosome-binding GTPase PJH08_11960 PF13167 GTP-binding GTPase N-terminal PJH08_11960 PF16360 GTP-binding GTPase Middle Region PJH08_11970 PF00271 Helicase conserved C-terminal domain PJH08_11970 PF00270 DEAD/DEAH box helicase PJH08_11975 PF00970 Oxidoreductase FAD-binding domain PJH08_11975 PF00111 2Fe-2S iron-sulfur cluster binding domain PJH08_11975 PF00175 Oxidoreductase NAD-binding domain PJH08_11980 PF02508 Rnf-Nqr subunit, membrane protein PJH08_11985 PF02508 Rnf-Nqr subunit, membrane protein PJH08_11990 PF04205 FMN-binding domain PJH08_11995 PF03116 NQR2, RnfD, RnfE family PJH08_12000 PF11973 NQRA C-terminal domain PJH08_12000 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PJH08_12010 PF04379 ApaG domain PJH08_12030 PF00171 Aldehyde dehydrogenase family PJH08_12035 PF05193 Peptidase M16 inactive domain PJH08_12040 PF00293 NUDIX domain PJH08_12055 PF03928 Haem-degrading PJH08_12065 PF02527 rRNA small subunit methyltransferase G PJH08_12070 PF00487 Fatty acid desaturase PJH08_12075 PF00155 Aminotransferase class I and II PJH08_12090 PF01026 TatD related DNase PJH08_12095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PJH08_12095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PJH08_12100 PF14437 MafB19-like deaminase PJH08_12110 PF00593 TonB dependent receptor PJH08_12110 PF07715 TonB-dependent Receptor Plug Domain PJH08_12115 PF17863 AAA lid domain PJH08_12115 PF07726 ATPase family associated with various cellular activities (AAA) PJH08_12120 PF01882 Protein of unknown function DUF58 PJH08_12130 PF07584 Aerotolerance regulator N-terminal PJH08_12130 PF13519 von Willebrand factor type A domain PJH08_12135 PF07584 Aerotolerance regulator N-terminal PJH08_12135 PF13519 von Willebrand factor type A domain PJH08_12160 PF01740 STAS domain PJH08_12160 PF00916 Sulfate permease family PJH08_12165 PF00484 Carbonic anhydrase PJH08_12170 PF06574 FAD synthetase PJH08_12170 PF01687 Riboflavin kinase PJH08_12175 PF02403 Seryl-tRNA synthetase N-terminal domain PJH08_12175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PJH08_12190 PF00398 Ribosomal RNA adenine dimethylase PJH08_12195 PF03448 MgtE intracellular N domain PJH08_12195 PF01769 Divalent cation transporter PJH08_12195 PF00571 CBS domain PJH08_12205 PF00111 2Fe-2S iron-sulfur cluster binding domain PJH08_12205 PF00970 Oxidoreductase FAD-binding domain PJH08_12205 PF00175 Oxidoreductase NAD-binding domain PJH08_12220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJH08_12225 PF02780 Transketolase, C-terminal domain PJH08_12225 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PJH08_12225 PF02779 Transketolase, pyrimidine binding domain PJH08_12230 PF00231 ATP synthase PJH08_12235 PF02874 ATP synthase alpha/beta family, beta-barrel domain PJH08_12235 PF00306 ATP synthase alpha/beta chain, C terminal domain PJH08_12235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJH08_12245 PF00430 ATP synthase B/B' CF(0) PJH08_12250 PF00137 ATP synthase subunit C PJH08_12255 PF00119 ATP synthase A chain PJH08_12285 PF00877 NlpC/P60 family PJH08_12285 PF01476 LysM domain PJH08_12290 PF03372 Endonuclease/Exonuclease/phosphatase family PJH08_12300 PF01144 Coenzyme A transferase PJH08_12305 PF01144 Coenzyme A transferase PJH08_12310 PF00912 Transglycosylase PJH08_12310 PF00905 Penicillin binding protein transpeptidase domain PJH08_12315 PF14109 GldH lipoprotein PJH08_12330 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PJH08_12330 PF00749 tRNA synthetases class I (E and Q), catalytic domain PJH08_12340 PF05195 Aminopeptidase P, N-terminal domain PJH08_12340 PF00557 Metallopeptidase family M24 PJH08_12345 PF00270 DEAD/DEAH box helicase PJH08_12345 PF00271 Helicase conserved C-terminal domain PJH08_12355 PF08443 RimK-like ATP-grasp domain PJH08_12355 PF18030 RimK PreATP-grasp domain PJH08_12360 PF02152 Dihydroneopterin aldolase PJH08_12375 PF00753 Metallo-beta-lactamase superfamily PJH08_12380 PF05922 Peptidase inhibitor I9 PJH08_12380 PF00082 Subtilase family PJH08_12400 PF01914 MarC family integral membrane protein PJH08_12410 PF04231 Endonuclease I PJH08_12415 PF04389 Peptidase family M28 PJH08_12415 PF04151 Bacterial pre-peptidase C-terminal domain PJH08_12420 PF13085 2Fe-2S iron-sulfur cluster binding domain PJH08_12425 PF00890 FAD binding domain PJH08_12425 PF02910 Fumarate reductase flavoprotein C-term PJH08_12435 PF00317 Ribonucleotide reductase, all-alpha domain PJH08_12435 PF02867 Ribonucleotide reductase, barrel domain PJH08_12435 PF03477 ATP cone domain PJH08_12445 PF00085 Thioredoxin PJH08_12450 PF00326 Prolyl oligopeptidase family PJH08_12450 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PJH08_12455 PF00005 ABC transporter PJH08_12455 PF08402 TOBE domain PJH08_12460 PF09844 Uncharacterized conserved protein (COG2071) PJH08_12490 PF00171 Aldehyde dehydrogenase family PJH08_12515 PF01266 FAD dependent oxidoreductase PJH08_12515 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PJH08_12530 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PJH08_12530 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PJH08_12535 PF00692 dUTPase PJH08_12540 PF00154 recA bacterial DNA recombination protein PJH08_12550 PF00849 RNA pseudouridylate synthase PJH08_12565 PF13673 Acetyltransferase (GNAT) domain PJH08_12570 PF02502 Ribose/Galactose Isomerase