locus-tag	class	description
PJJ26_00120	COG3209	COG3209 Rhs family protein
PJJ26_00120	COG4104	PAAR repeat-containing protein
PJJ26_00145	COG3209	COG3209 Rhs family protein
PJJ26_00155	COG3209	COG3209 Rhs family protein
PJJ26_00165	COG3209	COG3209 Rhs family protein
PJJ26_00175	COG3209	COG3209 Rhs family protein
PJJ26_00175	COG4104	PAAR repeat-containing protein
PJJ26_00345	COG5433	transposase activity
PJJ26_00390	COG0517	IMP dehydrogenase activity
PJJ26_00395	COG4974	Belongs to the 'phage' integrase family
PJJ26_00405	COG0517	IMP dehydrogenase activity
PJJ26_00410	COG4974	Belongs to the 'phage' integrase family
PJJ26_00460	COG4974	Belongs to the 'phage' integrase family
PJJ26_00465	COG1192	Involved in chromosome partitioning
PJJ26_00685	COG0557	exoribonuclease II activity
PJJ26_00695	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PJJ26_00700	COG0393	Putative heavy-metal-binding
PJJ26_00720	COG0445	tRNA wobble uridine modification
PJJ26_00725	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PJJ26_00740	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PJJ26_00755	COG0420	3'-5' exonuclease activity
PJJ26_00760	COG0419	ATPase involved in DNA repair
PJJ26_00780	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PJJ26_00795	COG4680	protein conserved in bacteria
PJJ26_00815	COG0758	DNA mediated transformation
PJJ26_00815	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PJJ26_00830	COG0189	ligase activity
PJJ26_00830	COG4067	protein conserved in archaea
PJJ26_00835	COG0315	cyclic pyranopterin monophosphate synthase activity
PJJ26_00835	COG0746	molybdenum cofactor guanylyltransferase activity
PJJ26_00840	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PJJ26_00845	COG0315	cyclic pyranopterin monophosphate synthase activity
PJJ26_00850	COG0303	'Molybdopterin
PJJ26_00855	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
PJJ26_00865	COG0322	excinuclease ABC activity
PJJ26_00870	COG1752	Esterase of the alpha-beta hydrolase superfamily
PJJ26_00880	COG0776	regulation of translation
PJJ26_00900	COG1629	transport
PJJ26_00900	COG4206	TonB-dependent receptor
PJJ26_00910	COG0629	single-stranded DNA binding
PJJ26_00940	COG0612	Peptidase, M16
PJJ26_00945	COG0612	Peptidase, M16
PJJ26_00950	COG0261	This protein binds to 23S rRNA in the presence of protein L20
PJJ26_00955	COG0211	Belongs to the bacterial ribosomal protein bL27 family
PJJ26_00965	COG2972	Histidine kinase
PJJ26_00965	COG0745	RESPONSE REGULATOR receiver
PJJ26_00970	COG1054	Belongs to the UPF0176 family
PJJ26_00975	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PJJ26_00980	COG1418	mRNA catabolic process
PJJ26_00985	COG1024	Enoyl-CoA hydratase
PJJ26_00990	COG5000	phosphorelay sensor kinase activity
PJJ26_00995	COG0470	DNA polymerase III
PJJ26_01035	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PJJ26_01050	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PJJ26_01060	COG0489	protein tyrosine kinase activity
PJJ26_01070	COG0492	ferredoxin-NADP+ reductase activity
PJJ26_01080	COG0633	Ferredoxin
PJJ26_01085	COG2116	formate transmembrane transporter activity
PJJ26_01090	COG0716	FMN binding
PJJ26_01120	COG1607	acyl-coa hydrolase
PJJ26_01125	COG0628	permease
PJJ26_01145	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PJJ26_01160	COG0488	(ABC) transporter
PJJ26_01170	COG0745	RESPONSE REGULATOR receiver
PJJ26_01175	COG5002	protein histidine kinase activity
PJJ26_01190	COG0793	Belongs to the peptidase S41A family
PJJ26_01195	COG0594	ribonuclease P activity
PJJ26_01205	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
PJJ26_01220	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PJJ26_01225	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
PJJ26_01230	COG0193	aminoacyl-tRNA hydrolase activity
PJJ26_01245	COG0720	synthase
PJJ26_01255	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
PJJ26_01260	COG0534	Mate efflux family protein
PJJ26_01265	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PJJ26_01280	COG4585	Histidine kinase
PJJ26_01290	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PJJ26_01295	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
PJJ26_01300	COG3185	4-Hydroxyphenylpyruvate dioxygenase
PJJ26_01305	COG3483	tryptophan 2,3-dioxygenase activity
PJJ26_01315	COG0739	heme binding
PJJ26_01320	COG0166	Belongs to the GPI family
PJJ26_01325	COG4771	TonB-dependent receptor
PJJ26_01360	COG0314	molybdopterin synthase activity
PJJ26_01365	COG0126	phosphoglycerate kinase activity
PJJ26_01370	COG0667	Aldo Keto reductase
PJJ26_01390	COG0180	Tryptophanyl-tRNA synthetase
PJJ26_01400	COG1272	protein, Hemolysin III
PJJ26_01405	COG2954	triphosphatase activity
PJJ26_01490	COG0840	transmembrane signaling receptor activity
PJJ26_01495	COG0840	transmembrane signaling receptor activity
PJJ26_01505	COG0632	four-way junction helicase activity
PJJ26_01515	COG0509	glycine decarboxylation via glycine cleavage system
PJJ26_01535	COG0463	Glycosyl transferase, family 2
PJJ26_01540	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
PJJ26_01560	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PJJ26_01575	COG0515	serine threonine protein kinase
PJJ26_01575	COG1262	PFAM Formylglycine-generating sulfatase enzyme
PJJ26_01585	COG1858	cytochrome C peroxidase
PJJ26_01595	COG4771	TonB-dependent receptor
PJJ26_01625	COG0495	leucyl-tRNA aminoacylation
PJJ26_01645	COG1946	Acyl-CoA thioesterase
PJJ26_01650	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
PJJ26_01650	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
PJJ26_01660	COG1970	mechanosensitive ion channel activity
PJJ26_01665	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PJJ26_01670	COG1435	thymidine kinase activity
PJJ26_01690	COG0779	Required for maturation of 30S ribosomal subunits
PJJ26_01695	COG0195	Participates in both transcription termination and antitermination
PJJ26_01700	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PJJ26_01810	COG4771	TonB-dependent receptor
PJJ26_01820	COG0803	Belongs to the bacterial solute-binding protein 9 family
PJJ26_01825	COG1121	(ABC) transporter
PJJ26_01830	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PJJ26_01835	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PJJ26_01840	COG1074	ATP-dependent DNA helicase activity
PJJ26_01845	COG0156	8-amino-7-oxononanoate synthase activity
PJJ26_01855	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PJJ26_01865	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PJJ26_01870	COG4122	O-methyltransferase activity
PJJ26_01875	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
PJJ26_01880	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PJJ26_01890	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PJJ26_01905	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PJJ26_01910	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
PJJ26_01920	COG0156	8-amino-7-oxononanoate synthase activity
PJJ26_01940	COG0508	dehydrogenase complex catalyzes the overall conversion of
PJJ26_01945	COG1012	belongs to the aldehyde dehydrogenase family
PJJ26_01950	COG0564	pseudouridine synthase activity
PJJ26_01955	COG0218	Necessary for normal cell division and for the maintenance of normal septation
PJJ26_01960	COG2267	carboxylic ester hydrolase activity
PJJ26_01965	COG2001	Belongs to the MraZ family
PJJ26_01970	COG0275	rRNA processing
PJJ26_01985	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PJJ26_01990	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PJJ26_01995	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PJJ26_02000	COG0772	Belongs to the SEDS family
PJJ26_02005	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PJJ26_02010	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PJJ26_02025	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PJJ26_02030	COG1610	YqeY-like protein
PJJ26_02045	COG0517	IMP dehydrogenase activity
PJJ26_02050	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PJJ26_02055	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PJJ26_02060	COG1595	DNA-templated transcription, initiation
PJJ26_02065	COG1595	DNA-templated transcription, initiation
PJJ26_02085	COG2226	methyltransferase
PJJ26_02090	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
PJJ26_02105	COG0442	prolyl-tRNA aminoacylation
PJJ26_02120	COG0268	Binds directly to 16S ribosomal RNA
PJJ26_02135	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PJJ26_02140	COG1968	undecaprenyl-diphosphatase activity
PJJ26_02150	COG2177	Part of the ABC transporter FtsEX involved in
PJJ26_02155	COG0346	lactoylglutathione lyase activity
PJJ26_02160	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PJJ26_02165	COG4591	ABC-type transport system involved in lipoprotein release permease component
PJJ26_02185	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PJJ26_02195	COG0431	NADPH-dependent FMN reductase
PJJ26_02200	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
PJJ26_02215	COG0481	GTPase activity
PJJ26_02230	COG4771	TonB-dependent receptor
PJJ26_02245	COG0252	asparaginase activity
PJJ26_02250	COG0811	peptide transport
PJJ26_02260	COG0848	biopolymer transport protein
PJJ26_02280	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
PJJ26_02285	COG0017	Asparaginyl-tRNA synthetase
PJJ26_02300	COG0233	cytoplasmic translational termination
PJJ26_02305	COG0528	UMP kinase activity
PJJ26_02310	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PJJ26_02315	COG0052	Belongs to the universal ribosomal protein uS2 family
PJJ26_02320	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
PJJ26_02325	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PJJ26_02335	COG1477	protein flavinylation
PJJ26_02340	COG2226	methyltransferase
PJJ26_02355	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PJJ26_02360	COG0501	Belongs to the peptidase M48B family
PJJ26_02365	COG3186	Phenylalanine-4-hydroxylase
PJJ26_02385	COG1233	COG1233 Phytoene dehydrogenase and related
PJJ26_02415	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
PJJ26_02425	COG0702	epimerase
PJJ26_02445	COG0386	Belongs to the glutathione peroxidase family
PJJ26_02455	COG0415	Belongs to the DNA photolyase family
PJJ26_02460	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PJJ26_02475	COG4206	TonB-dependent receptor
PJJ26_02475	COG1629	transport
PJJ26_02510	COG3540	Alkaline phosphatase
PJJ26_02520	COG2363	Small membrane protein
PJJ26_02530	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
PJJ26_02540	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PJJ26_02555	COG1160	GTP binding
PJJ26_02565	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PJJ26_02600	COG2423	ornithine cyclodeaminase activity
PJJ26_02610	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PJJ26_02615	COG1715	Restriction endonuclease
PJJ26_02625	COG0006	proline dipeptidase activity
PJJ26_02630	COG0006	proline dipeptidase activity
PJJ26_02635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PJJ26_02645	COG3938	Belongs to the proline racemase family
PJJ26_02655	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PJJ26_02670	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
PJJ26_02700	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PJJ26_02710	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
PJJ26_02715	COG0596	Alpha beta hydrolase
PJJ26_02720	COG1950	PFAM Membrane protein of
PJJ26_02725	COG0544	peptidyl-prolyl cis-trans isomerase activity
PJJ26_02735	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PJJ26_02745	COG0358	DNA primase activity
PJJ26_02750	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
PJJ26_02765	COG1428	Deoxynucleoside kinase
PJJ26_02775	COG1185	polyribonucleotide nucleotidyltransferase activity
PJJ26_02780	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PJJ26_02785	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PJJ26_02790	COG0191	fructose-bisphosphate aldolase activity
PJJ26_02800	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PJJ26_02805	COG1428	Deoxynucleoside kinase
PJJ26_02815	COG0321	lipoyl(octanoyl) transferase activity
PJJ26_02845	COG1490	D-aminoacyl-tRNA deacylase activity
PJJ26_02850	COG1162	GTPase activity
PJJ26_02860	COG1605	Chorismate mutase
PJJ26_02860	COG0287	Prephenate dehydrogenase
PJJ26_02925	COG0857	belongs to the CobB CobQ family
PJJ26_02925	COG0280	phosphate acetyltransferase
PJJ26_02930	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PJJ26_02935	COG0101	tRNA pseudouridine synthase activity
PJJ26_02945	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
PJJ26_02955	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
PJJ26_02975	COG0285	dihydrofolate synthase activity
PJJ26_03020	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PJJ26_03025	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PJJ26_03050	COG0438	transferase activity, transferring glycosyl groups
PJJ26_03050	COG0297	glycogen (starch) synthase activity
PJJ26_03055	COG1086	Polysaccharide biosynthesis protein
PJJ26_03080	COG0297	glycogen (starch) synthase activity
PJJ26_03085	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PJJ26_03090	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PJJ26_03105	COG1028	Short-chain dehydrogenase reductase Sdr
PJJ26_03115	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
PJJ26_03120	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PJJ26_03140	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PJJ26_03140	COG0519	Catalyzes the synthesis of GMP from XMP
PJJ26_03145	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PJJ26_03150	COG0295	cytidine deaminase activity
PJJ26_03165	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
PJJ26_03180	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PJJ26_03180	COG1333	cytochrome c biogenesis protein
PJJ26_03185	COG0688	phosphatidylethanolamine metabolic process
PJJ26_03190	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PJJ26_03190	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PJJ26_03195	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PJJ26_03230	COG1917	Cupin 2, conserved barrel domain protein
PJJ26_03230	COG2207	Transcriptional regulator
PJJ26_03235	COG4716	Myosin-crossreactive antigen
PJJ26_03245	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PJJ26_03260	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PJJ26_03265	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PJJ26_03275	COG1132	(ABC) transporter
PJJ26_03280	COG0101	tRNA pseudouridine synthase activity
PJJ26_03290	COG4585	Histidine kinase
PJJ26_03315	COG2197	response regulator
PJJ26_03330	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PJJ26_03340	COG2315	Protein conserved in bacteria
PJJ26_03350	COG0492	ferredoxin-NADP+ reductase activity
PJJ26_03360	COG2866	Carboxypeptidase
PJJ26_03370	COG3579	cysteine-type endopeptidase activity
PJJ26_03405	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PJJ26_03420	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
PJJ26_03435	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PJJ26_03440	COG0671	phosphoesterase, PA-phosphatase related
PJJ26_03450	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PJJ26_03475	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
PJJ26_03580	COG1678	Uncharacterized ACR, COG1678
PJJ26_03585	COG3279	Response regulator of the LytR AlgR family
PJJ26_03590	COG3275	phosphorelay sensor kinase activity
PJJ26_03600	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
PJJ26_03620	COG4771	TonB-dependent receptor
PJJ26_03630	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PJJ26_03635	COG1595	DNA-templated transcription, initiation
PJJ26_03640	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PJJ26_03645	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PJJ26_03660	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
PJJ26_03675	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
PJJ26_03680	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
PJJ26_03690	COG0681	Belongs to the peptidase S26 family
PJJ26_03695	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
PJJ26_03705	COG0592	DNA-directed DNA polymerase activity
PJJ26_03735	COG1104	cysteine desulfurase activity
PJJ26_03750	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PJJ26_03755	COG1663	tetraacyldisaccharide 4'-kinase activity
PJJ26_03760	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PJJ26_03765	COG1136	(ABC) transporter
PJJ26_03775	COG0045	succinate-CoA ligase (ADP-forming) activity
PJJ26_03800	COG0556	nucleotide-excision repair
PJJ26_03825	COG1278	Cold shock
PJJ26_03830	COG1278	Cold shock
PJJ26_03835	COG1278	Cold shock
PJJ26_03840	COG4895	conserved protein (DUF2196)
PJJ26_03860	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PJJ26_03870	COG2329	Antibiotic biosynthesis monooxygenase
PJJ26_03875	COG4166	transmembrane transport
PJJ26_03895	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PJJ26_03905	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
PJJ26_03920	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PJJ26_03935	COG0300	oxidoreductase activity
PJJ26_03940	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PJJ26_03950	COG2996	Protein conserved in bacteria
PJJ26_03970	COG1058	Belongs to the CinA family
PJJ26_03970	COG1546	Belongs to the CinA family
PJJ26_03975	COG0227	Belongs to the bacterial ribosomal protein bL28 family
PJJ26_03980	COG0267	Belongs to the bacterial ribosomal protein bL33 family
PJJ26_03990	COG0552	protein localization to endoplasmic reticulum
PJJ26_04005	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PJJ26_04040	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
PJJ26_04065	COG1702	phosphate starvation-inducible protein PhoH
PJJ26_04070	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PJJ26_04075	COG3657	addiction module killer protein
PJJ26_04085	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
PJJ26_04105	COG0156	8-amino-7-oxononanoate synthase activity
PJJ26_04155	COG1482	cell wall glycoprotein biosynthetic process
PJJ26_04165	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
PJJ26_04170	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PJJ26_04180	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PJJ26_04205	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
PJJ26_04250	COG0321	lipoyl(octanoyl) transferase activity
PJJ26_04250	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PJJ26_04255	COG3022	response to hydroperoxide
PJJ26_04260	COG2949	membrane
PJJ26_04265	COG1760	l-serine dehydratase
PJJ26_04285	COG0205	6-phosphofructokinase activity
PJJ26_04295	COG0251	oxidation-reduction process
PJJ26_04300	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
PJJ26_04305	COG0860	N-Acetylmuramoyl-L-alanine amidase
PJJ26_04315	COG0247	lactate metabolic process
PJJ26_04315	COG2181	nitrate reductase activity
PJJ26_04320	COG2181	nitrate reductase activity
PJJ26_04320	COG0247	lactate metabolic process
PJJ26_04330	COG1575	Belongs to the MenA family. Type 1 subfamily
PJJ26_04335	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
PJJ26_04345	COG4948	Mandelate Racemase Muconate Lactonizing
PJJ26_04350	COG1266	CAAX protease self-immunity
PJJ26_04365	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PJJ26_04370	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PJJ26_04375	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PJJ26_04380	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PJJ26_04385	COG1841	ribosomal large subunit assembly
PJJ26_04390	COG0200	Binds to the 23S rRNA
PJJ26_04395	COG0201	protein transport
PJJ26_04400	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PJJ26_04405	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PJJ26_04410	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PJJ26_04415	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PJJ26_04420	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PJJ26_04425	COG0202	RNA polymerase activity
PJJ26_04430	COG0203	ribosomal protein L17
PJJ26_04435	COG0505	Belongs to the CarA family
PJJ26_04440	COG0148	phosphopyruvate hydratase activity
PJJ26_04450	COG0010	Belongs to the arginase family
PJJ26_04475	COG0352	thiamine-phosphate diphosphorylase activity
PJJ26_04480	COG2022	thiamine diphosphate biosynthetic process
PJJ26_04485	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PJJ26_04515	COG0300	oxidoreductase activity
PJJ26_04530	COG2234	aminopeptidase activity
PJJ26_04535	COG1120	ATPase activity
PJJ26_04540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PJJ26_04545	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PJJ26_04555	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PJJ26_04565	COG0339	signal peptide processing
PJJ26_04575	COG1295	ribonuclease BN
PJJ26_04580	COG0124	histidyl-tRNA synthetase
PJJ26_04585	COG0302	gtp cyclohydrolase
PJJ26_04590	COG4771	TonB-dependent receptor
PJJ26_04630	COG1862	Preprotein translocase
PJJ26_04640	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PJJ26_04650	COG1132	(ABC) transporter
PJJ26_04660	COG1169	isochorismate synthase
PJJ26_04665	COG2050	protein possibly involved in aromatic compounds catabolism
PJJ26_04675	COG0009	L-threonylcarbamoyladenylate synthase
PJJ26_04695	COG0488	(ABC) transporter
PJJ26_04700	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PJJ26_04720	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PJJ26_04755	COG1418	mRNA catabolic process
PJJ26_04760	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
PJJ26_04800	COG0335	large ribosomal subunit rRNA binding
PJJ26_04805	COG0336	Belongs to the RNA methyltransferase TrmD family
PJJ26_04810	COG0564	pseudouridine synthase activity
PJJ26_04815	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
PJJ26_04820	COG2195	Cleaves the N-terminal amino acid of tripeptides
PJJ26_04825	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PJJ26_04835	COG1981	membrane
PJJ26_04845	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
PJJ26_04860	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
PJJ26_04865	COG0181	hydroxymethylbilane synthase activity
PJJ26_04870	COG0113	porphobilinogen synthase activity
PJJ26_04875	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
PJJ26_04880	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
PJJ26_04895	COG0408	coproporphyrinogen oxidase activity
PJJ26_04900	COG0508	dehydrogenase complex catalyzes the overall conversion of
PJJ26_04905	COG1090	epimerase
PJJ26_04920	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PJJ26_04920	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PJJ26_04930	COG0215	cysteine-tRNA ligase activity
PJJ26_04935	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
PJJ26_04940	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PJJ26_04950	COG0590	tRNA wobble adenosine to inosine editing
PJJ26_04975	COG0706	membrane insertase activity
PJJ26_04980	COG0504	CTP synthase activity
PJJ26_04990	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
PJJ26_04995	COG1607	acyl-coa hydrolase
PJJ26_05025	COG4628	conserved protein (DUF2132)
PJJ26_05050	COG1408	metallophosphoesterase
PJJ26_05090	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PJJ26_05100	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
PJJ26_05105	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
PJJ26_05110	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
PJJ26_05115	COG4206	TonB-dependent receptor
PJJ26_05125	COG3011	Protein conserved in bacteria
PJJ26_05130	COG1136	(ABC) transporter
PJJ26_05135	COG1136	(ABC) transporter
PJJ26_05135	COG0577	efflux transmembrane transporter activity
PJJ26_05140	COG0577	efflux transmembrane transporter activity
PJJ26_05140	COG1136	(ABC) transporter
PJJ26_05150	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PJJ26_05155	COG4628	conserved protein (DUF2132)
PJJ26_05160	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PJJ26_05165	COG1028	Short-chain dehydrogenase reductase Sdr
PJJ26_05170	COG3956	TIGRFAM MazG family protein
PJJ26_05180	COG0242	peptide deformylase activity
PJJ26_05185	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PJJ26_05190	COG2171	N-acyltransferase activity
PJJ26_05195	COG0438	transferase activity, transferring glycosyl groups
PJJ26_05200	COG1215	transferase activity, transferring glycosyl groups
PJJ26_05225	COG0517	IMP dehydrogenase activity
PJJ26_05225	COG0617	tRNA 3'-terminal CCA addition
PJJ26_05225	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
PJJ26_05230	COG1132	(ABC) transporter
PJJ26_05240	COG0463	Glycosyl transferase, family 2
PJJ26_05255	COG4974	Belongs to the 'phage' integrase family
PJJ26_05265	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
PJJ26_05280	COG1183	phosphatidylcholine synthase activity
PJJ26_05285	COG1137	ATPase activity
PJJ26_05295	COG0805	protein transport
PJJ26_05305	COG0514	ATP-dependent DNA helicase (RecQ)
PJJ26_05315	COG0686	Belongs to the AlaDH PNT family
PJJ26_05325	COG2204	response regulator
PJJ26_05330	COG1078	dGTPase activity
PJJ26_05335	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PJJ26_05340	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
PJJ26_05340	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PJJ26_05345	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PJJ26_05350	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PJJ26_05360	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
PJJ26_05380	COG2096	Adenosyltransferase
PJJ26_05385	COG1797	cobyrinic acid a,c-diamide synthase activity
PJJ26_05390	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
PJJ26_05400	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
PJJ26_05420	COG0778	Nitroreductase
PJJ26_05440	COG1648	precorrin-2 dehydrogenase activity
PJJ26_05440	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PJJ26_05470	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PJJ26_05475	COG1492	cobalamin metabolic process
PJJ26_05480	COG1943	Transposase
PJJ26_05505	COG3002	Belongs to the UPF0753 family
PJJ26_05510	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
PJJ26_05515	COG0659	secondary active sulfate transmembrane transporter activity
PJJ26_05525	COG1401	restriction endodeoxyribonuclease activity
PJJ26_05525	COG1401	restriction endodeoxyribonuclease activity
PJJ26_05575	COG4804	nuclease activity
PJJ26_05585	COG3177	Filamentation induced by cAMP protein fic
PJJ26_05625	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PJJ26_05645	COG2885	chlorophyll binding
PJJ26_05665	COG2373	Large extracellular alpha-helical protein
PJJ26_05690	COG0460	homoserine dehydrogenase
PJJ26_05690	COG0527	aspartate kinase activity
PJJ26_05700	COG1959	2 iron, 2 sulfur cluster binding
PJJ26_05710	COG0175	sulfate reduction
PJJ26_05715	COG0175	sulfate reduction
PJJ26_05725	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PJJ26_05730	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PJJ26_05730	COG1648	precorrin-2 dehydrogenase activity
PJJ26_05735	COG1648	precorrin-2 dehydrogenase activity
PJJ26_05735	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PJJ26_05740	COG0492	ferredoxin-NADP+ reductase activity
PJJ26_05745	COG1045	serine acetyltransferase
PJJ26_05765	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
PJJ26_05775	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PJJ26_05780	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PJJ26_05785	COG0066	3-isopropylmalate dehydratase activity
PJJ26_05805	COG0129	dihydroxy-acid dehydratase activity
PJJ26_05810	COG0028	Belongs to the TPP enzyme family
PJJ26_05820	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PJJ26_05825	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PJJ26_05830	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PJJ26_05840	COG0076	glutamate decarboxylase activity
PJJ26_05845	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PJJ26_05855	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PJJ26_05860	COG0360	Binds together with S18 to 16S ribosomal RNA
PJJ26_05865	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PJJ26_05870	COG0359	binds to the 23S rRNA
PJJ26_05880	COG2195	Cleaves the N-terminal amino acid of tripeptides
PJJ26_05910	COG0438	transferase activity, transferring glycosyl groups
PJJ26_05915	COG1250	3-hydroxyacyl-CoA dehydrogenase
PJJ26_05925	COG0673	inositol 2-dehydrogenase activity
PJJ26_05930	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
PJJ26_05945	COG0813	purine-nucleoside phosphorylase activity
PJJ26_05990	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PJJ26_05995	COG2885	chlorophyll binding
PJJ26_06005	COG0668	transmembrane transport
PJJ26_06010	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PJJ26_06015	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
PJJ26_06015	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PJJ26_06040	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PJJ26_06070	COG0513	Belongs to the DEAD box helicase family
PJJ26_06080	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
PJJ26_06135	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PJJ26_06140	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PJJ26_06145	COG0484	heat shock protein binding
PJJ26_06165	COG1028	Short-chain dehydrogenase reductase Sdr
PJJ26_06175	COG0047	phosphoribosylformylglycinamidine synthase activity
PJJ26_06175	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PJJ26_06195	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PJJ26_06200	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PJJ26_06205	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PJJ26_06220	COG3958	Transketolase
PJJ26_06225	COG0424	maF-like protein
PJJ26_06235	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
PJJ26_06240	COG3047	cAMP biosynthetic process
PJJ26_06245	COG0542	response to heat
PJJ26_06265	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PJJ26_06290	COG1278	Cold shock
PJJ26_06300	COG1278	Cold shock
PJJ26_06310	COG1979	alcohol dehydrogenase
PJJ26_06320	COG1309	transcriptional regulator
PJJ26_06335	COG1522	sequence-specific DNA binding
PJJ26_06340	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PJJ26_06350	COG0564	pseudouridine synthase activity
PJJ26_06355	COG1522	sequence-specific DNA binding
PJJ26_06375	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PJJ26_06380	COG0539	negative regulation of cytoplasmic translation
PJJ26_06395	COG1739	Uncharacterized protein family UPF0029
PJJ26_06400	COG0697	spore germination
PJJ26_06405	COG1011	Hydrolase
PJJ26_06410	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PJJ26_06410	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PJJ26_06420	COG2890	protein-(glutamine-N5) methyltransferase activity
PJJ26_06435	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
PJJ26_06465	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
PJJ26_06480	COG0167	dihydroorotate dehydrogenase activity
PJJ26_06490	COG2356	endonuclease I
PJJ26_06520	COG1363	Peptidase, m42
PJJ26_06550	COG0488	(ABC) transporter
PJJ26_06595	COG1607	acyl-coa hydrolase
PJJ26_06625	COG4771	TonB-dependent receptor
PJJ26_06630	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PJJ26_06680	COG1301	dicarboxylic acid transport
PJJ26_06695	COG0668	transmembrane transport
PJJ26_06710	COG3005	denitrification pathway
PJJ26_06715	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PJJ26_06715	COG1333	cytochrome c biogenesis protein
PJJ26_06720	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PJJ26_06720	COG1333	cytochrome c biogenesis protein
PJJ26_06725	COG0516	GMP reductase activity
PJJ26_06725	COG0517	IMP dehydrogenase activity
PJJ26_06780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PJJ26_06820	COG3842	ATPase activity
PJJ26_06825	COG1175	transmembrane transport
PJJ26_06860	COG1840	ABC-type Fe3 transport system, periplasmic component
PJJ26_06905	COG0525	valine-tRNA ligase activity
PJJ26_06925	COG0812	UDP-N-acetylmuramate dehydrogenase activity
PJJ26_06950	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PJJ26_06970	COG3876	Protein conserved in bacteria
PJJ26_07005	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PJJ26_07015	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PJJ26_07015	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PJJ26_07045	COG0012	GTP binding
PJJ26_07065	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PJJ26_07070	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PJJ26_07075	COG3340	Belongs to the peptidase S51 family
PJJ26_07105	COG0714	Associated with various cellular activities
PJJ26_07130	COG0514	ATP-dependent DNA helicase (RecQ)
PJJ26_07135	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PJJ26_07140	COG0776	regulation of translation
PJJ26_07145	COG2249	NAD(P)H dehydrogenase (quinone) activity
PJJ26_07150	COG0116	Belongs to the methyltransferase superfamily
PJJ26_07170	COG0602	queuosine metabolic process
PJJ26_07175	COG0825	malonyl-CoA metabolic process
PJJ26_07190	COG0343	queuine tRNA-ribosyltransferase activity
PJJ26_07195	COG1187	pseudouridine synthase activity
PJJ26_07220	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
PJJ26_07225	COG0564	pseudouridine synthase activity
PJJ26_07235	COG1181	Belongs to the D-alanine--D-alanine ligase family
PJJ26_07240	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PJJ26_07255	COG0745	RESPONSE REGULATOR receiver
PJJ26_07300	COG3279	Response regulator of the LytR AlgR family
PJJ26_07310	COG4251	negative regulation of phosphorylation
PJJ26_07320	COG4251	negative regulation of phosphorylation
PJJ26_07330	COG0784	Response regulator, receiver
PJJ26_07360	COG0243	molybdopterin cofactor binding
PJJ26_07365	COG0437	4 iron, 4 sulfur cluster binding
PJJ26_07380	COG3012	SEC-C Motif Domain Protein
PJJ26_07390	COG0083	homoserine kinase activity
PJJ26_07395	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
PJJ26_07400	COG1022	Amp-dependent synthetase and ligase
PJJ26_07405	COG0564	pseudouridine synthase activity
PJJ26_07410	COG2270	Major facilitator Superfamily
PJJ26_07425	COG4771	TonB-dependent receptor
PJJ26_07430	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
PJJ26_07440	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PJJ26_07445	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PJJ26_07455	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PJJ26_07465	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PJJ26_07470	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PJJ26_07490	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PJJ26_07490	COG0140	phosphoribosyl-ATP diphosphatase activity
PJJ26_07495	COG0107	imidazoleglycerol-phosphate synthase activity
PJJ26_07500	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PJJ26_07515	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PJJ26_07520	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
PJJ26_07525	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
PJJ26_07530	COG1217	gtp-binding protein TYPA
PJJ26_07540	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PJJ26_07545	COG1228	amidohydrolase
PJJ26_07570	COG0010	Belongs to the arginase family
PJJ26_07605	COG3279	Response regulator of the LytR AlgR family
PJJ26_07610	COG2972	Histidine kinase
PJJ26_07635	COG1393	Belongs to the ArsC family
PJJ26_07655	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
PJJ26_07660	COG0497	DNA recombination
PJJ26_07685	COG1528	Iron-storage protein
PJJ26_07690	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PJJ26_07710	COG4974	Belongs to the 'phage' integrase family
PJJ26_07755	COG0517	IMP dehydrogenase activity
PJJ26_07790	COG0517	IMP dehydrogenase activity
PJJ26_07815	COG0517	IMP dehydrogenase activity
PJJ26_07855	COG0517	IMP dehydrogenase activity
PJJ26_07860	COG4974	Belongs to the 'phage' integrase family
PJJ26_07875	COG0517	IMP dehydrogenase activity
PJJ26_07880	COG4974	Belongs to the 'phage' integrase family
PJJ26_07895	COG0517	IMP dehydrogenase activity
PJJ26_07900	COG4974	Belongs to the 'phage' integrase family
PJJ26_07945	COG0517	IMP dehydrogenase activity
PJJ26_07950	COG4974	Belongs to the 'phage' integrase family
PJJ26_07985	COG0517	IMP dehydrogenase activity
PJJ26_07990	COG4974	Belongs to the 'phage' integrase family
PJJ26_08010	COG0517	IMP dehydrogenase activity
PJJ26_08015	COG4974	Belongs to the 'phage' integrase family
PJJ26_08045	COG0517	IMP dehydrogenase activity
PJJ26_08050	COG4974	Belongs to the 'phage' integrase family
PJJ26_08115	COG0517	IMP dehydrogenase activity
PJJ26_08135	COG0517	IMP dehydrogenase activity
PJJ26_08275	COG4974	Belongs to the 'phage' integrase family
PJJ26_08295	COG0517	IMP dehydrogenase activity
PJJ26_08310	COG0517	IMP dehydrogenase activity
PJJ26_08345	COG0517	IMP dehydrogenase activity
PJJ26_08390	COG0517	IMP dehydrogenase activity
PJJ26_08410	COG0514	ATP-dependent DNA helicase (RecQ)
PJJ26_08425	COG0280	phosphate acetyltransferase
PJJ26_08450	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PJJ26_08460	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PJJ26_08475	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PJJ26_08510	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PJJ26_08515	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PJJ26_08520	COG0824	Thioesterase
PJJ26_08525	COG2096	Adenosyltransferase
PJJ26_08535	COG0653	protein targeting
PJJ26_08550	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PJJ26_08560	COG1620	l-lactate permease
PJJ26_08585	COG0534	Mate efflux family protein
PJJ26_08600	COG1674	ftsk spoiiie
PJJ26_08620	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PJJ26_08620	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PJJ26_08635	COG0482	sulfurtransferase activity
PJJ26_08650	COG3118	belongs to the thioredoxin family
PJJ26_08660	COG0018	arginyl-trna synthetase
PJJ26_08665	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PJJ26_08735	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PJJ26_08740	COG1902	pentaerythritol trinitrate reductase activity
PJJ26_08740	COG0446	pyridine nucleotide-disulphide oxidoreductase
PJJ26_08985	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PJJ26_08990	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PJJ26_08995	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PJJ26_09000	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PJJ26_09005	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PJJ26_09010	COG0255	Belongs to the universal ribosomal protein uL29 family
PJJ26_09015	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PJJ26_09020	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PJJ26_09025	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PJJ26_09030	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PJJ26_09035	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PJJ26_09040	COG0089	rRNA binding
PJJ26_09045	COG0088	Forms part of the polypeptide exit tunnel
PJJ26_09050	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PJJ26_09060	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PJJ26_09065	COG0049	tRNA binding
PJJ26_09070	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PJJ26_09075	COG1629	transport
PJJ26_09085	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PJJ26_09095	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PJJ26_09110	COG2003	Belongs to the UPF0758 family
PJJ26_09115	COG0569	domain protein
PJJ26_09140	COG2274	protein secretion by the type I secretion system
PJJ26_09165	COG0662	Cupin 2, conserved barrel domain protein
PJJ26_09180	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PJJ26_09185	COG3844	kynureninase activity
PJJ26_09195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PJJ26_09205	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PJJ26_09205	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PJJ26_09210	COG0076	glutamate decarboxylase activity
PJJ26_09255	COG0069	glutamate synthase activity
PJJ26_09260	COG0254	rRNA binding
PJJ26_09300	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
PJJ26_09305	COG2207	Transcriptional regulator
PJJ26_09305	COG1917	Cupin 2, conserved barrel domain protein
PJJ26_09310	COG0730	response to heat
PJJ26_09315	COG1858	cytochrome C peroxidase
PJJ26_09325	COG1253	flavin adenine dinucleotide binding
PJJ26_09330	COG0783	Belongs to the Dps family
PJJ26_09340	COG0659	secondary active sulfate transmembrane transporter activity
PJJ26_09345	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PJJ26_09350	COG0540	Belongs to the ATCase OTCase family
PJJ26_09365	COG1234	tRNA 3'-trailer cleavage
PJJ26_09380	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PJJ26_09385	COG0326	Molecular chaperone. Has ATPase activity
PJJ26_09460	COG1385	rRNA (uridine-N3-)-methyltransferase activity
PJJ26_09475	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
PJJ26_09480	COG1472	Belongs to the glycosyl hydrolase 3 family
PJJ26_09525	COG0443	Heat shock 70 kDa protein
PJJ26_09530	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PJJ26_09540	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
PJJ26_09540	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
PJJ26_09545	COG0799	negative regulation of ribosome biogenesis
PJJ26_09550	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PJJ26_09560	COG4589	Belongs to the CDS family
PJJ26_09615	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PJJ26_09630	COG2373	Large extracellular alpha-helical protein
PJJ26_09650	COG1404	Belongs to the peptidase S8 family
PJJ26_09655	COG2234	aminopeptidase activity
PJJ26_09660	COG2877	3-deoxy-8-phosphooctulonate synthase activity
PJJ26_09675	COG3530	Putative quorum-sensing-regulated virulence factor
PJJ26_09795	COG2205	protein histidine kinase activity
PJJ26_09815	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PJJ26_09850	COG2072	flavoprotein involved in K transport
PJJ26_09895	COG0589	response to stress
PJJ26_09910	COG0348	domain, Protein
PJJ26_09945	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PJJ26_09955	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
PJJ26_09960	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
PJJ26_09980	COG1842	Phage shock protein A
PJJ26_09990	COG1396	sequence-specific DNA binding
PJJ26_10000	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PJJ26_10005	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PJJ26_10015	COG2217	Heavy metal translocating P-type atpase
PJJ26_10030	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PJJ26_10035	COG0085	RNA polymerase activity
PJJ26_10040	COG0222	ribosome binding
PJJ26_10045	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PJJ26_10050	COG0081	regulation of translation
PJJ26_10055	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PJJ26_10105	COG4974	Belongs to the 'phage' integrase family
PJJ26_10110	COG0828	Belongs to the bacterial ribosomal protein bS21 family
PJJ26_10115	COG1960	acyl-CoA dehydrogenase activity
PJJ26_10130	COG1091	dTDP-4-dehydrorhamnose reductase activity
PJJ26_10160	COG1132	(ABC) transporter
PJJ26_10165	COG1611	Belongs to the LOG family
PJJ26_10180	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PJJ26_10190	COG2816	NAD+ diphosphatase activity
PJJ26_10195	COG0778	Nitroreductase
PJJ26_10200	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PJJ26_10230	COG0450	alkyl hydroperoxide reductase
PJJ26_10245	COG1668	transmembrane transport
PJJ26_10250	COG4152	abc transporter atp-binding protein
PJJ26_10255	COG1846	Transcriptional regulator
PJJ26_10260	COG1250	3-hydroxyacyl-CoA dehydrogenase
PJJ26_10260	COG1024	Enoyl-CoA hydratase
PJJ26_10265	COG0183	Belongs to the thiolase family
PJJ26_10270	COG1960	acyl-CoA dehydrogenase activity
PJJ26_10300	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PJJ26_10310	COG0174	glutamine synthetase
PJJ26_10350	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
PJJ26_10355	COG2264	protein methyltransferase activity
PJJ26_10360	COG0149	triose-phosphate isomerase activity
PJJ26_10370	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PJJ26_10380	COG0601	transmembrane transport
PJJ26_10385	COG0284	orotidine-5'-phosphate decarboxylase activity
PJJ26_10395	COG1629	transport
PJJ26_10395	COG4206	TonB-dependent receptor
PJJ26_10415	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
PJJ26_10420	COG2986	histidine ammonia-lyase
PJJ26_10425	COG0583	DNA-binding transcription factor activity
PJJ26_10435	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PJJ26_10435	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
PJJ26_10435	COG1703	isobutyryl-CoA mutase activity
PJJ26_10470	COG0159	tryptophan synthase activity
PJJ26_10475	COG0133	tryptophan synthase activity
PJJ26_10485	COG0134	indole-3-glycerol-phosphate synthase activity
PJJ26_10490	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PJJ26_10495	COG0512	Glutamine amidotransferase of anthranilate synthase
PJJ26_10500	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PJJ26_10505	COG0367	asparagine synthase
PJJ26_10510	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
PJJ26_10515	COG0187	DNA topoisomerase II activity
PJJ26_10530	COG2884	Cell division ATP-binding protein ftsE
PJJ26_10550	COG0545	Peptidyl-prolyl cis-trans isomerase
PJJ26_10555	COG1595	DNA-templated transcription, initiation
PJJ26_10570	COG1127	ABC transporter
PJJ26_10575	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PJJ26_10615	COG0183	Belongs to the thiolase family
PJJ26_10620	COG0791	NLP P60 protein
PJJ26_10630	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PJJ26_10635	COG0542	response to heat
PJJ26_10640	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PJJ26_10665	COG2733	membrane
PJJ26_10685	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
PJJ26_10740	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PJJ26_10805	COG1032	radical SAM domain protein
PJJ26_10840	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
PJJ26_10845	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
PJJ26_10875	COG4191	Histidine kinase
PJJ26_10885	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PJJ26_10895	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PJJ26_10900	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PJJ26_10905	COG0339	signal peptide processing
PJJ26_10975	COG1253	flavin adenine dinucleotide binding
PJJ26_11000	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
PJJ26_11030	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
PJJ26_11040	COG1705	Flagellar rod assembly protein muramidase FlgJ
PJJ26_11040	COG1388	LysM domain
PJJ26_11070	COG0488	(ABC) transporter
PJJ26_11100	COG1262	PFAM Formylglycine-generating sulfatase enzyme
PJJ26_11105	COG0010	Belongs to the arginase family
PJJ26_11115	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PJJ26_11120	COG3604	Transcriptional regulator
PJJ26_11135	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PJJ26_11140	COG0459	protein refolding
PJJ26_11155	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PJJ26_11160	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PJJ26_11180	COG2814	Major facilitator Superfamily
PJJ26_11190	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PJJ26_11195	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
PJJ26_11200	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
PJJ26_11205	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
PJJ26_11210	COG2363	Small membrane protein
PJJ26_11225	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PJJ26_11235	COG1271	oxidase subunit
PJJ26_11240	COG1294	oxidase, subunit
PJJ26_11250	COG2267	carboxylic ester hydrolase activity
PJJ26_11255	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
PJJ26_11265	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PJJ26_11295	COG0519	Catalyzes the synthesis of GMP from XMP
PJJ26_11300	COG0616	signal peptide processing
PJJ26_11305	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PJJ26_11350	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PJJ26_11355	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PJJ26_11360	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PJJ26_11375	COG2759	Belongs to the formate--tetrahydrofolate ligase family
PJJ26_11380	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PJJ26_11390	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PJJ26_11395	COG0791	NLP P60 protein
PJJ26_11400	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PJJ26_11405	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
PJJ26_11410	COG0793	Belongs to the peptidase S41A family
PJJ26_11425	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
PJJ26_11435	COG0658	competence protein
PJJ26_11435	COG2333	competence protein COMEC
PJJ26_11455	COG0823	Involved in the tonB-independent uptake of proteins
PJJ26_11455	COG1506	peptidase
PJJ26_11470	COG2081	HI0933 family
PJJ26_11495	COG1629	transport
PJJ26_11525	COG1187	pseudouridine synthase activity
PJJ26_11550	COG0138	bifunctional purine biosynthesis protein purh
PJJ26_11555	COG1077	Cell shape determining protein MreB Mrl
PJJ26_11570	COG0768	penicillin binding
PJJ26_11655	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
PJJ26_11665	COG0333	Belongs to the bacterial ribosomal protein bL32 family
PJJ26_11670	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PJJ26_11675	COG0511	ligase activity, forming carbon-carbon bonds
PJJ26_11680	COG0439	Biotin carboxylase
PJJ26_11685	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PJJ26_11685	COG1519	Transferase
PJJ26_11690	COG2391	methyltransferase activity
PJJ26_11705	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PJJ26_11730	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PJJ26_11735	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
PJJ26_11750	COG1522	sequence-specific DNA binding
PJJ26_11765	COG0793	Belongs to the peptidase S41A family
PJJ26_11765	COG3409	Peptidoglycan-binding domain 1 protein
PJJ26_11775	COG2205	protein histidine kinase activity
PJJ26_11790	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PJJ26_11795	COG0194	GDP metabolic process
PJJ26_11800	COG1561	YicC-like family, N-terminal region
PJJ26_11810	COG1652	LysM domain
PJJ26_11815	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
PJJ26_11825	COG0316	Belongs to the HesB IscA family
PJJ26_11835	COG0396	ATPase activity
PJJ26_11840	COG0719	Fe-S assembly protein
PJJ26_11845	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PJJ26_11860	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PJJ26_11865	COG0668	transmembrane transport
PJJ26_11870	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PJJ26_11880	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
PJJ26_11895	COG1757	Na H antiporter
PJJ26_11905	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PJJ26_11915	COG2824	Alkylphosphonate utilization operon protein PhnA
PJJ26_11920	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PJJ26_11925	COG0228	four-way junction DNA binding
PJJ26_11930	COG1278	Cold shock
PJJ26_11960	COG0792	nuclease activity
PJJ26_11965	COG1619	proteins homologs of microcin C7 resistance protein MccF
PJJ26_11980	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PJJ26_11980	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PJJ26_11985	COG2183	response to ionizing radiation
PJJ26_11990	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PJJ26_11995	COG0629	single-stranded DNA binding
PJJ26_12010	COG0469	pyruvate kinase activity
PJJ26_12020	COG0571	ribonuclease III activity
PJJ26_12025	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PJJ26_12030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PJJ26_12040	COG3341	Caulimovirus viroplasmin
PJJ26_12040	COG0328	RNA-DNA hybrid ribonuclease activity
PJJ26_12060	COG1214	PFAM Peptidase M22, glycoprotease
PJJ26_12075	COG2322	membrane
PJJ26_12080	COG1999	signal sequence binding
PJJ26_12095	COG1845	cytochrome c oxidase, subunit III
PJJ26_12100	COG1845	cytochrome c oxidase, subunit III
PJJ26_12105	COG0109	protoheme IX farnesyltransferase activity
PJJ26_12150	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PJJ26_12155	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PJJ26_12160	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
PJJ26_12170	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
PJJ26_12175	COG2086	electron transfer activity
PJJ26_12190	COG0022	dehydrogenase e1 component
PJJ26_12190	COG0508	dehydrogenase complex catalyzes the overall conversion of
PJJ26_12200	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
PJJ26_12205	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PJJ26_12220	COG0037	tRNA processing
PJJ26_12225	COG0785	Cytochrome C biogenesis protein
PJJ26_12230	COG0606	chelatase, subunit chli
PJJ26_12235	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PJJ26_12245	COG1528	Iron-storage protein
PJJ26_12275	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PJJ26_12285	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PJJ26_12295	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
PJJ26_12300	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
PJJ26_12305	COG0297	glycogen (starch) synthase activity
PJJ26_12315	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
PJJ26_12340	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PJJ26_12350	COG1115	amino acid carrier protein
PJJ26_12365	COG1476	TRANSCRIPTIONal
PJJ26_12370	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
PJJ26_12415	COG0464	growth
PJJ26_12460	COG0584	glycerophosphoryl diester phosphodiesterase
PJJ26_12465	COG1288	antiporter activity
PJJ26_12475	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PJJ26_12500	COG1999	signal sequence binding
PJJ26_12505	COG0750	zinc metalloprotease
PJJ26_12520	COG0527	aspartate kinase activity
PJJ26_12530	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
PJJ26_12565	COG3118	belongs to the thioredoxin family
PJJ26_12565	COG0492	ferredoxin-NADP+ reductase activity
PJJ26_12570	COG1408	metallophosphoesterase
PJJ26_12575	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PJJ26_12575	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PJJ26_12600	COG1040	competence protein
PJJ26_12625	COG0423	glycine-tRNA ligase activity
PJJ26_12640	COG1629	transport
PJJ26_12645	COG2814	Major facilitator Superfamily
PJJ26_12655	COG1381	Involved in DNA repair and RecF pathway recombination
PJJ26_12675	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PJJ26_12675	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PJJ26_12690	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
PJJ26_12720	COG0437	4 iron, 4 sulfur cluster binding
PJJ26_12735	COG1253	flavin adenine dinucleotide binding
PJJ26_12750	COG2151	metal-sulfur cluster biosynthetic enzyme
PJJ26_12755	COG2166	iron-sulfur cluster assembly
PJJ26_12765	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PJJ26_12780	COG4771	TonB-dependent receptor
PJJ26_12795	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
PJJ26_12800	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PJJ26_12810	COG0513	Belongs to the DEAD box helicase family
PJJ26_12820	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PJJ26_12825	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PJJ26_12830	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PJJ26_12835	COG1805	sodium ion transport
PJJ26_12840	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PJJ26_12850	COG2967	ApaG domain
PJJ26_12870	COG1012	belongs to the aldehyde dehydrogenase family
PJJ26_12875	COG0612	Peptidase, M16
PJJ26_12880	COG0494	nUDIX hydrolase
PJJ26_12905	COG0357	Ribosomal RNA small subunit methyltransferase G
PJJ26_12910	COG3239	Fatty acid desaturase
PJJ26_12915	COG0436	Aminotransferase
PJJ26_12925	COG0084	hydrolase, TatD family'
PJJ26_12935	COG0590	tRNA wobble adenosine to inosine editing
PJJ26_12940	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PJJ26_12950	COG0714	Associated with various cellular activities
PJJ26_12965	COG2304	oxidoreductase activity
PJJ26_12970	COG2304	oxidoreductase activity
PJJ26_12995	COG0659	secondary active sulfate transmembrane transporter activity
PJJ26_13000	COG0288	reversible hydration of carbon dioxide
PJJ26_13005	COG0196	riboflavin kinase activity
PJJ26_13010	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PJJ26_13030	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
PJJ26_13035	COG2239	Acts as a magnesium transporter
PJJ26_13070	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PJJ26_13075	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PJJ26_13080	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PJJ26_13085	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PJJ26_13095	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PJJ26_13100	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PJJ26_13105	COG0356	it plays a direct role in the translocation of protons across the membrane
PJJ26_13135	COG4152	abc transporter atp-binding protein
PJJ26_13150	COG0791	NLP P60 protein
PJJ26_13150	COG1388	LysM domain
PJJ26_13155	COG0708	Exodeoxyribonuclease III
PJJ26_13160	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
PJJ26_13165	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
PJJ26_13170	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
PJJ26_13190	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PJJ26_13200	COG0006	proline dipeptidase activity
PJJ26_13205	COG0513	Belongs to the DEAD box helicase family
PJJ26_13235	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PJJ26_13260	COG2095	MarC family integral membrane protein
PJJ26_13270	COG2356	endonuclease I
PJJ26_13280	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
PJJ26_13285	COG1053	succinate dehydrogenase
PJJ26_13310	COG1505	serine-type exopeptidase activity
PJJ26_13320	COG3361	conserved protein (COG2071)
PJJ26_13350	COG1012	belongs to the aldehyde dehydrogenase family
PJJ26_13375	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
PJJ26_13395	COG0756	dUTP diphosphatase activity
PJJ26_13400	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PJJ26_13410	COG1187	pseudouridine synthase activity
PJJ26_13425	COG2153	protein acetylation