locus-tag class description HER15_00005 PF00308 Bacterial dnaA protein HER15_00005 PF08299 Bacterial dnaA protein helix-turn-helix HER15_00005 PF11638 DnaA N-terminal domain HER15_00010 PF01451 Low molecular weight phosphotyrosine protein phosphatase HER15_00015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER15_00025 PF02618 YceG-like family HER15_00030 PF13302 Acetyltransferase (GNAT) domain HER15_00035 PF01678 Diaminopimelate epimerase HER15_00040 PF00595 PDZ domain HER15_00045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HER15_00045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HER15_00060 PF12826 Helix-hairpin-helix motif HER15_00060 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HER15_00060 PF01653 NAD-dependent DNA ligase adenylation domain HER15_00060 PF00533 BRCA1 C Terminus (BRCT) domain HER15_00060 PF03120 NAD-dependent DNA ligase OB-fold domain HER15_00090 PF00701 Dihydrodipicolinate synthetase family HER15_00095 PF00210 Ferritin-like domain HER15_00115 PF04127 DNA / pantothenate metabolism flavoprotein HER15_00115 PF02441 Flavoprotein HER15_00125 PF02463 RecF/RecN/SMC N terminal domain HER15_00145 PF02709 N-terminal domain of galactosyltransferase HER15_00145 PF00535 Glycosyl transferase family 2 HER15_00150 PF05193 Peptidase M16 inactive domain HER15_00150 PF00675 Insulinase (Peptidase family M16) HER15_00155 PF12791 Anti-sigma factor N-terminus HER15_00155 PF07691 PA14 domain HER15_00195 PF00691 OmpA family HER15_00195 PF01389 OmpA-like transmembrane domain HER15_00220 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HER15_00230 PF00009 Elongation factor Tu GTP binding domain HER15_00230 PF16658 Class II release factor RF3, C-terminal domain HER15_00240 PF00293 NUDIX domain HER15_00250 PF01238 Phosphomannose isomerase type I HER15_00260 PF02348 Cytidylyltransferase HER15_00265 PF13419 Haloacid dehalogenase-like hydrolase HER15_00270 PF00302 Chloramphenicol acetyltransferase HER15_00295 PF04542 Sigma-70 region 2 HER15_00295 PF08281 Sigma-70, region 4 HER15_00305 PF03099 Biotin/lipoate A/B protein ligase family HER15_00305 PF12706 Beta-lactamase superfamily domain HER15_00310 PF03883 Peroxide stress protein YaaA HER15_00315 PF02698 DUF218 domain HER15_00320 PF03313 Serine dehydratase alpha chain HER15_00320 PF03315 Serine dehydratase beta chain HER15_00335 PF00474 Sodium:solute symporter family HER15_00340 PF00365 Phosphofructokinase HER15_00345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HER15_00345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HER15_00350 PF02142 MGS-like domain HER15_00355 PF01042 Endoribonuclease L-PSP HER15_00360 PF04453 LPS transport system D HER15_00360 PF03968 OstA-like protein HER15_00365 PF01520 N-acetylmuramoyl-L-alanine amidase HER15_00365 PF11741 AMIN domain HER15_00375 PF02754 Cysteine-rich domain HER15_00375 PF13183 4Fe-4S dicluster domain HER15_00380 PF02754 Cysteine-rich domain HER15_00380 PF13183 4Fe-4S dicluster domain HER15_00390 PF01040 UbiA prenyltransferase family HER15_00415 PF02517 CPBP intramembrane metalloprotease HER15_00430 PF01709 Transcriptional regulator HER15_00440 PF01039 Carboxyl transferase domain HER15_00450 PF01274 Malate synthase HER15_00455 PF00463 Isocitrate lyase family HER15_00490 PF14542 GCN5-related N-acetyl-transferase HER15_00500 PF01047 MarR family HER15_00510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER15_00510 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_00520 PF00005 ABC transporter HER15_00520 PF12848 ABC transporter HER15_00535 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_00535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HER15_00540 PF00750 tRNA synthetases class I (R) HER15_00540 PF03485 Arginyl tRNA synthetase N terminal domain HER15_00540 PF05746 DALR anticodon binding domain HER15_00600 PF03060 Nitronate monooxygenase HER15_00610 PF08502 LeuA allosteric (dimerisation) domain HER15_00610 PF00682 HMGL-like HER15_00615 PF00330 Aconitase family (aconitate hydratase) HER15_00620 PF00694 Aconitase C-terminal domain HER15_00625 PF00180 Isocitrate/isopropylmalate dehydrogenase HER15_00640 PF07694 5TMR of 5TMR-LYT HER15_00640 PF13492 GAF domain HER15_00640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_00640 PF06580 Histidine kinase HER15_00645 PF04397 LytTr DNA-binding domain HER15_00645 PF00072 Response regulator receiver domain HER15_00660 PF01361 Tautomerase enzyme HER15_00695 PF00491 Arginase family HER15_00700 PF01979 Amidohydrolase family HER15_00705 PF00204 DNA gyrase B HER15_00705 PF00986 DNA gyrase B subunit, carboxyl terminus HER15_00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_00705 PF01751 Toprim domain HER15_00715 PF00521 DNA gyrase/topoisomerase IV, subunit A HER15_00720 PF00924 Mechanosensitive ion channel HER15_00720 PF05552 Conserved TM helix HER15_00735 PF00375 Sodium:dicarboxylate symporter family HER15_00740 PF00581 Rhodanese-like domain HER15_00760 PF13361 UvrD-like helicase C-terminal domain HER15_00760 PF00580 UvrD/REP helicase N-terminal domain HER15_00770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HER15_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER15_00780 PF03466 LysR substrate binding domain HER15_00785 PF00106 short chain dehydrogenase HER15_00790 PF10415 Fumarase C C-terminus HER15_00790 PF00206 Lyase HER15_00805 PF00216 Bacterial DNA-binding protein HER15_00810 PF02911 Formyl transferase, C-terminal domain HER15_00810 PF00551 Formyl transferase HER15_00815 PF00270 DEAD/DEAH box helicase HER15_00815 PF00271 Helicase conserved C-terminal domain HER15_00835 PF00639 PPIC-type PPIASE domain HER15_00835 PF09312 SurA N-terminal domain HER15_00840 PF07726 ATPase family associated with various cellular activities (AAA) HER15_00840 PF17863 AAA lid domain HER15_00850 PF01638 HxlR-like helix-turn-helix HER15_00855 PF12706 Beta-lactamase superfamily domain HER15_00860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HER15_00860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HER15_00885 PF01048 Phosphorylase superfamily HER15_00915 PF05958 tRNA (Uracil-5-)-methyltransferase HER15_00915 PF01938 TRAM domain HER15_00920 PF00691 OmpA family HER15_00930 PF00202 Aminotransferase class-III HER15_00935 PF02096 60Kd inner membrane protein HER15_00935 PF14849 YidC periplasmic domain HER15_00940 PF06418 CTP synthase N-terminus HER15_00940 PF00117 Glutamine amidotransferase class-I HER15_00945 PF00468 Ribosomal protein L34 HER15_00950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER15_00950 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HER15_00950 PF02142 MGS-like domain HER15_00955 PF00258 Flavodoxin HER15_00960 PF03061 Thioesterase superfamily HER15_00980 PF04773 FecR protein HER15_00980 PF16220 Domain of unknown function (DUF4880) HER15_00985 PF08281 Sigma-70, region 4 HER15_00985 PF04542 Sigma-70 region 2 HER15_00995 PF01467 Cytidylyltransferase-like HER15_01000 PF01820 D-ala D-ala ligase N-terminus HER15_01000 PF07478 D-ala D-ala ligase C-terminus HER15_01010 PF01479 S4 domain HER15_01010 PF00849 RNA pseudouridylate synthase HER15_01015 PF13520 Amino acid permease HER15_01040 PF00206 Lyase HER15_01050 PF00696 Amino acid kinase family HER15_01055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HER15_01055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HER15_01060 PF00202 Aminotransferase class-III HER15_01065 PF03807 NADP oxidoreductase coenzyme F420-dependent HER15_01065 PF14748 Pyrroline-5-carboxylate reductase dimerisation HER15_01070 PF02774 Semialdehyde dehydrogenase, dimerisation domain HER15_01070 PF01118 Semialdehyde dehydrogenase, NAD binding domain HER15_01075 PF00764 Arginosuccinate synthase HER15_01085 PF01063 Amino-transferase class IV HER15_01090 PF00920 Dehydratase family HER15_01095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HER15_01095 PF00205 Thiamine pyrophosphate enzyme, central domain HER15_01095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HER15_01105 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HER15_01105 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HER15_01110 PF00585 C-terminal regulatory domain of Threonine dehydratase HER15_01110 PF00291 Pyridoxal-phosphate dependent enzyme HER15_01115 PF02810 SEC-C motif HER15_01125 PF01568 Molydopterin dinucleotide binding domain HER15_01125 PF00384 Molybdopterin oxidoreductase HER15_01130 PF00072 Response regulator receiver domain HER15_01140 PF01590 GAF domain HER15_01140 PF00512 His Kinase A (phospho-acceptor) domain HER15_01140 PF08446 PAS fold HER15_01140 PF00360 Phytochrome region HER15_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_01150 PF00072 Response regulator receiver domain HER15_01150 PF04397 LytTr DNA-binding domain HER15_01195 PF00486 Transcriptional regulatory protein, C terminal HER15_01195 PF00072 Response regulator receiver domain HER15_01200 PF01238 Phosphomannose isomerase type I HER15_01235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HER15_01240 PF13302 Acetyltransferase (GNAT) domain HER15_01255 PF02311 AraC-like ligand binding domain HER15_01255 PF12833 Helix-turn-helix domain HER15_01260 PF12631 MnmE helical domain HER15_01260 PF10396 GTP-binding protein TrmE N-terminus HER15_01260 PF01926 50S ribosome-binding GTPase HER15_01280 PF00691 OmpA family HER15_01280 PF05736 OprF membrane domain HER15_01300 PF00207 Alpha-2-macroglobulin family HER15_01300 PF07703 Alpha-2-macroglobulin bait region domain HER15_01300 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HER15_01300 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HER15_01300 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HER15_01300 PF17962 Bacterial macroglobulin domain 6 HER15_01300 PF01835 MG2 domain HER15_01305 PF06832 Penicillin-Binding Protein C-terminus Family HER15_01305 PF00912 Transglycosylase HER15_01305 PF00905 Penicillin binding protein transpeptidase domain HER15_01310 PF03471 Transporter associated domain HER15_01310 PF00999 Sodium/hydrogen exchanger family HER15_01310 PF02080 TrkA-C domain HER15_01315 PF12169 DNA polymerase III subunits gamma and tau domain III HER15_01320 PF01625 Peptide methionine sulfoxide reductase HER15_01340 PF03741 Integral membrane protein TerC family HER15_01340 PF03471 Transporter associated domain HER15_01350 PF00206 Lyase HER15_01350 PF08328 Adenylosuccinate lyase C-terminal HER15_01375 PF01025 GrpE HER15_01380 PF00226 DnaJ domain HER15_01380 PF01556 DnaJ C terminal domain HER15_01380 PF00684 DnaJ central domain HER15_01390 PF00330 Aconitase family (aconitate hydratase) HER15_01390 PF06434 Aconitate hydratase 2 N-terminus HER15_01390 PF11791 Aconitate B N-terminal domain HER15_01395 PF00330 Aconitase family (aconitate hydratase) HER15_01395 PF00694 Aconitase C-terminal domain HER15_01420 PF02146 Sir2 family HER15_01425 PF00588 SpoU rRNA Methylase family HER15_01430 PF01131 DNA topoisomerase HER15_01430 PF01751 Toprim domain HER15_01450 PF01758 Sodium Bile acid symporter family HER15_01465 PF13302 Acetyltransferase (GNAT) domain HER15_01475 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HER15_01480 PF02562 PhoH-like protein HER15_01490 PF01259 SAICAR synthetase HER15_01495 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_01495 PF01799 [2Fe-2S] binding domain HER15_01500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HER15_01500 PF00034 Cytochrome c HER15_01500 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HER15_01505 PF00155 Aminotransferase class I and II HER15_01550 PF02417 Chromate transporter HER15_01555 PF01569 PAP2 superfamily HER15_01560 PF07681 DoxX HER15_01565 PF01569 PAP2 superfamily HER15_01575 PF07883 Cupin domain HER15_01575 PF12833 Helix-turn-helix domain HER15_01590 PF00588 SpoU rRNA Methylase family HER15_01590 PF08032 RNA 2'-O ribose methyltransferase substrate binding HER15_01595 PF13382 Adenine deaminase C-terminal domain HER15_01595 PF01979 Amidohydrolase family HER15_01600 PF01979 Amidohydrolase family HER15_01650 PF11838 ERAP1-like C-terminal domain HER15_01650 PF01433 Peptidase family M1 domain HER15_01685 PF02654 Cobalamin-5-phosphate synthase HER15_01690 PF02277 Phosphoribosyltransferase HER15_01695 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HER15_01705 PF07715 TonB-dependent Receptor Plug Domain HER15_01705 PF00593 TonB dependent receptor HER15_01715 PF04134 Protein of unknown function, DUF393 HER15_01720 PF00005 ABC transporter HER15_01725 PF00005 ABC transporter HER15_01725 PF02687 FtsX-like permease family HER15_01725 PF12704 MacB-like periplasmic core domain HER15_01730 PF00005 ABC transporter HER15_01730 PF12704 MacB-like periplasmic core domain HER15_01730 PF02687 FtsX-like permease family HER15_01740 PF01571 Aminomethyltransferase folate-binding domain HER15_01740 PF08669 Glycine cleavage T-protein C-terminal barrel domain HER15_01745 PF00578 AhpC/TSA family HER15_01760 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HER15_01760 PF00271 Helicase conserved C-terminal domain HER15_01760 PF17764 3′ DNA-binding domain (3′BD) HER15_01760 PF18074 Primosomal protein N C-terminal domain HER15_01760 PF04851 Type III restriction enzyme, res subunit HER15_01785 PF00106 short chain dehydrogenase HER15_01790 PF03819 MazG nucleotide pyrophosphohydrolase domain HER15_01800 PF01327 Polypeptide deformylase HER15_01805 PF03652 Holliday junction resolvase HER15_01810 PF14602 Hexapeptide repeat of succinyl-transferase HER15_01810 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_01810 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HER15_01815 PF17101 Stealth protein CR1, conserved region 1 HER15_01815 PF11380 Stealth protein CR2, conserved region 2 HER15_01820 PF01300 Telomere recombination HER15_01825 PF16385 Domain of unknown function HER15_01825 PF00884 Sulfatase HER15_01830 PF00571 CBS domain HER15_01830 PF01368 DHH family HER15_01830 PF02272 DHHA1 domain HER15_01830 PF01743 Poly A polymerase head domain HER15_01835 PF00664 ABC transporter transmembrane region HER15_01835 PF00005 ABC transporter HER15_01840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HER15_01840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HER15_01840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HER15_01840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HER15_01845 PF00535 Glycosyl transferase family 2 HER15_01860 PF02899 Phage integrase, N-terminal SAM-like domain HER15_01860 PF00589 Phage integrase family HER15_01875 PF01220 Dehydroquinase class II HER15_01890 PF01066 CDP-alcohol phosphatidyltransferase HER15_01905 PF00902 Sec-independent protein translocase protein (TatC) HER15_01910 PF01380 SIS domain HER15_01910 PF00571 CBS domain HER15_01915 PF00270 DEAD/DEAH box helicase HER15_01915 PF00271 Helicase conserved C-terminal domain HER15_01915 PF09382 RQC domain HER15_01915 PF16124 RecQ zinc-binding HER15_01915 PF00570 HRDC domain HER15_01935 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HER15_01935 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HER15_01940 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HER15_01945 PF02954 Bacterial regulatory protein, Fis family HER15_01945 PF00072 Response regulator receiver domain HER15_01945 PF00158 Sigma-54 interaction domain HER15_01950 PF01966 HD domain HER15_01960 PF07977 FabA-like domain HER15_01960 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HER15_01965 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HER15_01965 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_01970 PF01132 Elongation factor P (EF-P) OB domain HER15_01970 PF08207 Elongation factor P (EF-P) KOW-like domain HER15_01970 PF09285 Elongation factor P, C-terminal HER15_01975 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_01975 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HER15_01980 PF02629 CoA binding domain HER15_01980 PF00549 CoA-ligase HER15_01995 PF02769 AIR synthase related protein, C-terminal domain HER15_01995 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HER15_01995 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HER15_02010 PF02311 AraC-like ligand binding domain HER15_02010 PF12833 Helix-turn-helix domain HER15_02015 PF12706 Beta-lactamase superfamily domain HER15_02040 PF00472 RF-1 domain HER15_02045 PF01139 tRNA-splicing ligase RtcB HER15_02085 PF00106 short chain dehydrogenase HER15_02100 PF05726 Pirin C-terminal cupin domain HER15_02100 PF02678 Pirin HER15_02105 PF05726 Pirin C-terminal cupin domain HER15_02105 PF02678 Pirin HER15_02130 PF02646 RmuC family HER15_02140 PF00464 Serine hydroxymethyltransferase HER15_02150 PF04851 Type III restriction enzyme, res subunit HER15_02150 PF00271 Helicase conserved C-terminal domain HER15_02160 PF17871 AAA lid domain HER15_02160 PF07724 AAA domain (Cdc48 subfamily) HER15_02160 PF00004 ATPase family associated with various cellular activities (AAA) HER15_02160 PF10431 C-terminal, D2-small domain, of ClpB protein HER15_02160 PF02861 Clp amino terminal domain, pathogenicity island component HER15_02170 PF03922 OmpW family HER15_02175 PF01668 SmpB protein HER15_02185 PF02545 Maf-like protein HER15_02190 PF02779 Transketolase, pyrimidine binding domain HER15_02190 PF02780 Transketolase, C-terminal domain HER15_02200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER15_02200 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER15_02205 PF01479 S4 domain HER15_02210 PF00156 Phosphoribosyl transferase domain HER15_02215 PF01202 Shikimate kinase HER15_02235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HER15_02255 PF02525 Flavodoxin-like fold HER15_02270 PF07690 Major Facilitator Superfamily HER15_02275 PF00849 RNA pseudouridylate synthase HER15_02280 PF01037 Lrp/AsnC ligand binding domain HER15_02300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HER15_02300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HER15_02300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HER15_02300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HER15_02305 PF00575 S1 RNA binding domain HER15_02315 PF09186 Domain of unknown function (DUF1949) HER15_02315 PF01205 Uncharacterized protein family UPF0029 HER15_02325 PF13419 Haloacid dehalogenase-like hydrolase HER15_02330 PF01872 RibD C-terminal domain HER15_02330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HER15_02345 PF05175 Methyltransferase small domain HER15_02345 PF17827 PrmC N-terminal domain HER15_02390 PF02634 FdhD/NarQ family HER15_02405 PF06965 Na+/H+ antiporter 1 HER15_02410 PF17191 RecG wedge domain HER15_02410 PF00271 Helicase conserved C-terminal domain HER15_02410 PF00270 DEAD/DEAH box helicase HER15_02415 PF01029 NusB family HER15_02415 PF01189 16S rRNA methyltransferase RsmB/F HER15_02425 PF01575 MaoC like domain HER15_02430 PF03458 UPF0126 domain HER15_02435 PF00270 DEAD/DEAH box helicase HER15_02435 PF00271 Helicase conserved C-terminal domain HER15_02455 PF06071 Protein of unknown function (DUF933) HER15_02455 PF01926 50S ribosome-binding GTPase HER15_02460 PF00593 TonB dependent receptor HER15_02460 PF07715 TonB-dependent Receptor Plug Domain HER15_02465 PF00037 4Fe-4S binding domain HER15_02475 PF00266 Aminotransferase class-V HER15_02480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER15_02480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER15_02490 PF01168 Alanine racemase, N-terminal domain HER15_02495 PF01541 GIY-YIG catalytic domain HER15_02495 PF08459 UvrC Helix-hairpin-helix N-terminal HER15_02500 PF00520 Ion transport protein HER15_02500 PF00027 Cyclic nucleotide-binding domain HER15_02520 PF03144 Elongation factor Tu domain 2 HER15_02520 PF00009 Elongation factor Tu GTP binding domain HER15_02520 PF00679 Elongation factor G C-terminus HER15_02530 PF01619 Proline dehydrogenase HER15_02535 PF01761 3-dehydroquinate synthase HER15_02540 PF12794 Mechanosensitive ion channel inner membrane domain 1 HER15_02540 PF12795 Mechanosensitive ion channel porin domain HER15_02540 PF00924 Mechanosensitive ion channel HER15_02545 PF00210 Ferritin-like domain HER15_02575 PF13439 Glycosyltransferase Family 4 HER15_02575 PF00534 Glycosyl transferases group 1 HER15_02580 PF00456 Transketolase, thiamine diphosphate binding domain HER15_02600 PF14528 LAGLIDADG-like domain HER15_02600 PF03796 DnaB-like helicase C terminal domain HER15_02600 PF00772 DnaB-like helicase N terminal domain HER15_02600 PF14528 LAGLIDADG-like domain HER15_02600 PF03796 DnaB-like helicase C terminal domain HER15_02600 PF00772 DnaB-like helicase N terminal domain HER15_02610 PF01546 Peptidase family M20/M25/M40 HER15_02610 PF07687 Peptidase dimerisation domain HER15_02615 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HER15_02615 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HER15_02620 PF00593 TonB dependent receptor HER15_02625 PF03948 Ribosomal protein L9, C-terminal domain HER15_02625 PF01281 Ribosomal protein L9, N-terminal domain HER15_02630 PF01084 Ribosomal protein S18 HER15_02635 PF01250 Ribosomal protein S6 HER15_02645 PF00892 EamA-like transporter family HER15_02665 PF01502 Phosphoribosyl-AMP cyclohydrolase HER15_02665 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HER15_02670 PF00977 Histidine biosynthesis protein HER15_02675 PF00977 Histidine biosynthesis protein HER15_02680 PF00117 Glutamine amidotransferase class-I HER15_02685 PF00475 Imidazoleglycerol-phosphate dehydratase HER15_02690 PF00155 Aminotransferase class I and II HER15_02695 PF00815 Histidinol dehydrogenase HER15_02700 PF08029 HisG, C-terminal domain HER15_02700 PF01634 ATP phosphoribosyltransferase HER15_02720 PF04607 Region found in RelA / SpoT proteins HER15_02720 PF13291 ACT domain HER15_02720 PF02824 TGS domain HER15_02725 PF01475 Ferric uptake regulator family HER15_02730 PF00709 Adenylosuccinate synthetase HER15_02750 PF07732 Multicopper oxidase HER15_02755 PF00282 Pyridoxal-dependent decarboxylase conserved domain HER15_02765 PF00202 Aminotransferase class-III HER15_02835 PF01842 ACT domain HER15_02835 PF13840 ACT domain HER15_02835 PF00742 Homoserine dehydrogenase HER15_02835 PF03447 Homoserine dehydrogenase, NAD binding domain HER15_02835 PF00696 Amino acid kinase family HER15_02840 PF08544 GHMP kinases C terminal HER15_02840 PF00288 GHMP kinases N terminal domain HER15_02845 PF14821 Threonine synthase N terminus HER15_02845 PF00291 Pyridoxal-phosphate dependent enzyme HER15_02860 PF00005 ABC transporter HER15_02860 PF09383 NIL domain HER15_02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_02865 PF06580 Histidine kinase HER15_02865 PF07694 5TMR of 5TMR-LYT HER15_02870 PF04397 LytTr DNA-binding domain HER15_02870 PF00072 Response regulator receiver domain HER15_02875 PF00501 AMP-binding enzyme HER15_02880 PF00501 AMP-binding enzyme HER15_02885 PF00849 RNA pseudouridylate synthase HER15_02890 PF11700 Vacuole effluxer Atg22 like HER15_02905 PF01641 SelR domain HER15_02915 PF00448 SRP54-type protein, GTPase domain HER15_02915 PF02881 SRP54-type protein, helical bundle domain HER15_02915 PF02978 Signal peptide binding domain HER15_02920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HER15_02920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HER15_02940 PF00145 C-5 cytosine-specific DNA methylase HER15_02940 PF00145 C-5 cytosine-specific DNA methylase HER15_02950 PF12826 Helix-hairpin-helix motif HER15_02950 PF04002 RadC-like JAB domain HER15_02955 PF03575 Peptidase family S51 HER15_03025 PF05362 Lon protease (S16) C-terminal proteolytic domain HER15_03025 PF02190 ATP-dependent protease La (LON) substrate-binding domain HER15_03025 PF00004 ATPase family associated with various cellular activities (AAA) HER15_03040 PF01180 Dihydroorotate dehydrogenase HER15_03045 PF03483 B3/4 domain HER15_03045 PF03484 tRNA synthetase B5 domain HER15_03045 PF03147 Ferredoxin-fold anticodon binding domain HER15_03045 PF01588 Putative tRNA binding domain HER15_03045 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HER15_03050 PF00553 Cellulose binding domain HER15_03050 PF02011 Glycosyl hydrolase family 48 HER15_03050 PF00041 Fibronectin type III domain HER15_03070 PF05343 M42 glutamyl aminopeptidase HER15_03075 PF00293 NUDIX domain HER15_03125 PF12848 ABC transporter HER15_03125 PF00005 ABC transporter HER15_03135 PF00270 DEAD/DEAH box helicase HER15_03135 PF00271 Helicase conserved C-terminal domain HER15_03145 PF00291 Pyridoxal-phosphate dependent enzyme HER15_03150 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_03155 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_03160 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_03165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER15_03165 PF10414 Sirohaem synthase dimerisation region HER15_03165 PF14824 Sirohaem biosynthesis protein central HER15_03170 PF10414 Sirohaem synthase dimerisation region HER15_03170 PF14824 Sirohaem biosynthesis protein central HER15_03170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER15_03175 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HER15_03175 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HER15_03180 PF00037 4Fe-4S binding domain HER15_03185 PF00009 Elongation factor Tu GTP binding domain HER15_03190 PF01507 Phosphoadenosine phosphosulfate reductase family HER15_03195 PF01507 Phosphoadenosine phosphosulfate reductase family HER15_03205 PF02082 Transcriptional regulator HER15_03210 PF01053 Cys/Met metabolism PLP-dependent enzyme HER15_03215 PF03447 Homoserine dehydrogenase, NAD binding domain HER15_03215 PF00742 Homoserine dehydrogenase HER15_03215 PF00696 Amino acid kinase family HER15_03220 PF01053 Cys/Met metabolism PLP-dependent enzyme HER15_03225 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HER15_03230 PF01625 Peptide methionine sulfoxide reductase HER15_03235 PF01641 SelR domain HER15_03240 PF00571 CBS domain HER15_03240 PF00478 IMP dehydrogenase / GMP reductase domain HER15_03260 PF00072 Response regulator receiver domain HER15_03260 PF08769 Sporulation initiation factor Spo0A C terminal HER15_03265 PF00512 His Kinase A (phospho-acceptor) domain HER15_03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_03265 PF07689 KaiB domain HER15_03295 PF00149 Calcineurin-like phosphoesterase HER15_03305 PF00682 HMGL-like HER15_03310 PF08281 Sigma-70, region 4 HER15_03310 PF04542 Sigma-70 region 2 HER15_03335 PF00133 tRNA synthetases class I (I, L, M and V) HER15_03335 PF08264 Anticodon-binding domain of tRNA HER15_03335 PF10458 Valyl tRNA synthetase tRNA binding arm HER15_03345 PF13180 PDZ domain HER15_03350 PF00155 Aminotransferase class I and II HER15_03355 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HER15_03355 PF01565 FAD binding domain HER15_03375 PF04055 Radical SAM superfamily HER15_03380 PF00571 CBS domain HER15_03380 PF00291 Pyridoxal-phosphate dependent enzyme HER15_03390 PF07075 Protein of unknown function (DUF1343) HER15_03400 PF00291 Pyridoxal-phosphate dependent enzyme HER15_03400 PF00571 CBS domain HER15_03405 PF00326 Prolyl oligopeptidase family HER15_03405 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HER15_03410 PF02575 YbaB/EbfC DNA-binding family HER15_03430 PF07726 ATPase family associated with various cellular activities (AAA) HER15_03430 PF17863 AAA lid domain HER15_03475 PF01554 MatE HER15_03490 PF00005 ABC transporter HER15_03520 PF13091 PLD-like domain HER15_03520 PF13087 AAA domain HER15_03530 PF01494 FAD binding domain HER15_03535 PF02219 Methylenetetrahydrofolate reductase HER15_03540 PF02310 B12 binding domain HER15_03540 PF02607 B12 binding domain HER15_03540 PF02965 Vitamin B12 dependent methionine synthase, activation domain HER15_03540 PF00809 Pterin binding enzyme HER15_03540 PF02574 Homocysteine S-methyltransferase HER15_03545 PF02574 Homocysteine S-methyltransferase HER15_03545 PF00809 Pterin binding enzyme HER15_03550 PF00221 Aromatic amino acid lyase HER15_03555 PF08534 Redoxin HER15_03570 PF00905 Penicillin binding protein transpeptidase domain HER15_03600 PF03471 Transporter associated domain HER15_03600 PF00999 Sodium/hydrogen exchanger family HER15_03600 PF02080 TrkA-C domain HER15_03635 PF05872 Bacterial protein of unknown function (DUF853) HER15_03640 PF04055 Radical SAM superfamily HER15_03645 PF01545 Cation efflux family HER15_03645 PF16916 Dimerisation domain of Zinc Transporter HER15_03650 PF02321 Outer membrane efflux protein HER15_03655 PF00873 AcrB/AcrD/AcrF family HER15_03660 PF00529 HlyD membrane-fusion protein of T1SS HER15_03660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER15_03670 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HER15_03685 PF01702 Queuine tRNA-ribosyltransferase HER15_03690 PF00849 RNA pseudouridylate synthase HER15_03690 PF01479 S4 domain HER15_03725 PF02224 Cytidylate kinase HER15_03730 PF01256 Carbohydrate kinase HER15_03730 PF03853 YjeF-related protein N-terminus HER15_03745 PF03150 Di-haem cytochrome c peroxidase HER15_03760 PF07730 Histidine kinase HER15_03760 PF05384 Sensor protein DegS HER15_03760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_03770 PF16177 Acetyl-coenzyme A synthetase N-terminus HER15_03770 PF00501 AMP-binding enzyme HER15_03770 PF13193 AMP-binding enzyme C-terminal domain HER15_03780 PF00171 Aldehyde dehydrogenase family HER15_03785 PF17853 GGDEF-like domain HER15_03785 PF12833 Helix-turn-helix domain HER15_03795 PF00210 Ferritin-like domain HER15_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER15_03800 PF03466 LysR substrate binding domain HER15_03810 PF00916 Sulfate permease family HER15_03810 PF01740 STAS domain HER15_03815 PF00156 Phosphoribosyl transferase domain HER15_03820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HER15_03820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HER15_03835 PF12706 Beta-lactamase superfamily domain HER15_03855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HER15_03855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HER15_03860 PF00183 Hsp90 protein HER15_03865 PF00849 RNA pseudouridylate synthase HER15_03870 PF01746 tRNA (Guanine-1)-methyltransferase HER15_03875 PF01245 Ribosomal protein L19 HER15_03890 PF04151 Bacterial pre-peptidase C-terminal domain HER15_03890 PF04389 Peptidase family M28 HER15_03930 PF08338 Domain of unknown function (DUF1731) HER15_03930 PF01370 NAD dependent epimerase/dehydratase family HER15_03935 PF00583 Acetyltransferase (GNAT) family HER15_03940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HER15_03940 PF00364 Biotin-requiring enzyme HER15_03940 PF02817 e3 binding domain HER15_03945 PF01218 Coproporphyrinogen III oxidase HER15_03960 PF01208 Uroporphyrinogen decarboxylase (URO-D) HER15_03965 PF00202 Aminotransferase class-III HER15_03975 PF00490 Delta-aminolevulinic acid dehydratase HER15_03990 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HER15_03990 PF03900 Porphobilinogen deaminase, C-terminal domain HER15_03995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HER15_03995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HER15_03995 PF01488 Shikimate / quinate 5-dehydrogenase HER15_04010 PF00762 Ferrochelatase HER15_04015 PF03653 Uncharacterised protein family (UPF0093) HER15_04025 PF02132 RecR protein HER15_04025 PF13662 Toprim domain HER15_04030 PF01546 Peptidase family M20/M25/M40 HER15_04030 PF07687 Peptidase dimerisation domain HER15_04035 PF04336 Acyl carrier protein phosphodiesterase HER15_04045 PF14685 Tricorn protease PDZ domain HER15_04045 PF14684 Tricorn protease C1 domain HER15_04045 PF03572 Peptidase family S41 HER15_04045 PF07676 WD40-like Beta Propeller Repeat HER15_04050 PF00266 Aminotransferase class-V HER15_04065 PF03976 Polyphosphate kinase 2 (PPK2) HER15_04070 PF03976 Polyphosphate kinase 2 (PPK2) HER15_04080 PF00712 DNA polymerase III beta subunit, N-terminal domain HER15_04080 PF02768 DNA polymerase III beta subunit, C-terminal domain HER15_04080 PF02767 DNA polymerase III beta subunit, central domain HER15_04085 PF13614 AAA domain HER15_04090 PF02195 ParB-like nuclease domain HER15_04090 PF17762 HTH domain found in ParB protein HER15_04100 PF05173 Dihydrodipicolinate reductase, C-terminus HER15_04100 PF01113 Dihydrodipicolinate reductase, N-terminus HER15_04105 PF10502 Signal peptidase, peptidase S26 HER15_04120 PF02350 UDP-N-acetylglucosamine 2-epimerase HER15_04140 PF12833 Helix-turn-helix domain HER15_04165 PF04452 RNA methyltransferase HER15_04180 PF01758 Sodium Bile acid symporter family HER15_04190 PF00933 Glycosyl hydrolase family 3 N terminal domain HER15_04190 PF01915 Glycosyl hydrolase family 3 C-terminal domain HER15_04205 PF03976 Polyphosphate kinase 2 (PPK2) HER15_04210 PF03358 NADPH-dependent FMN reductase HER15_04225 PF00072 Response regulator receiver domain HER15_04225 PF04397 LytTr DNA-binding domain HER15_04250 PF06580 Histidine kinase HER15_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_04250 PF07694 5TMR of 5TMR-LYT HER15_04275 PF01212 Beta-eliminating lyase HER15_04280 PF00472 RF-1 domain HER15_04280 PF03462 PCRF domain HER15_04285 PF03960 ArsC family HER15_04290 PF03971 Monomeric isocitrate dehydrogenase HER15_04295 PF13580 SIS domain HER15_04340 PF01966 HD domain HER15_04340 PF00013 KH domain HER15_04340 PF12072 Domain of unknown function (DUF3552) HER15_04360 PF08460 Bacterial SH3 domain HER15_04360 PF01551 Peptidase family M23 HER15_04375 PF00893 Small Multidrug Resistance protein HER15_04385 PF01725 Ham1 family HER15_04390 PF01032 FecCD transport family HER15_04395 PF00005 ABC transporter HER15_04400 PF02225 PA domain HER15_04400 PF04389 Peptidase family M28 HER15_04405 PF00282 Pyridoxal-dependent decarboxylase conserved domain HER15_04415 PF08468 Methyltransferase small domain N-terminal HER15_04415 PF05175 Methyltransferase small domain HER15_04420 PF01645 Conserved region in glutamate synthase HER15_04425 PF01197 Ribosomal protein L31 HER15_04440 PF01979 Amidohydrolase family HER15_04450 PF17283 SprT-like zinc ribbon domain HER15_04450 PF10263 SprT-like family HER15_04455 PF00483 Nucleotidyl transferase HER15_04455 PF01050 Mannose-6-phosphate isomerase HER15_04460 PF00679 Elongation factor G C-terminus HER15_04460 PF03764 Elongation factor G, domain IV HER15_04460 PF14492 Elongation Factor G, domain II HER15_04460 PF00009 Elongation factor Tu GTP binding domain HER15_04465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HER15_04470 PF01784 NIF3 (NGG1p interacting factor 3) HER15_04480 PF01799 [2Fe-2S] binding domain HER15_04480 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_04480 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HER15_04480 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HER15_04485 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HER15_04485 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HER15_04495 PF02625 XdhC and CoxI family HER15_04495 PF13478 XdhC Rossmann domain HER15_04530 PF04607 Region found in RelA / SpoT proteins HER15_04530 PF13291 ACT domain HER15_04530 PF02824 TGS domain HER15_04535 PF05736 OprF membrane domain HER15_04535 PF00691 OmpA family HER15_04570 PF08442 ATP-grasp domain HER15_04570 PF00549 CoA-ligase HER15_04580 PF00005 ABC transporter HER15_04615 PF00919 Uncharacterized protein family UPF0004 HER15_04615 PF04055 Radical SAM superfamily HER15_04615 PF18693 TRAM domain HER15_04640 PF01425 Amidase HER15_04645 PF01638 HxlR-like helix-turn-helix HER15_04650 PF00881 Nitroreductase family HER15_04655 PF00448 SRP54-type protein, GTPase domain HER15_04655 PF02881 SRP54-type protein, helical bundle domain HER15_04665 PF00471 Ribosomal protein L33 HER15_04670 PF00830 Ribosomal L28 family HER15_04675 PF02464 Competence-damaged protein HER15_04675 PF18146 Damage-inducible protein CinA KH domain HER15_04675 PF00994 Probable molybdopterin binding domain HER15_04680 PF01557 Fumarylacetoacetate (FAA) hydrolase family HER15_04685 PF00378 Enoyl-CoA hydratase/isomerase HER15_04695 PF17783 CvfB-like winged helix domain HER15_04695 PF13509 S1 domain HER15_04700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HER15_04700 PF16582 Middle domain of thiamine pyrophosphate HER15_04700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HER15_04705 PF00923 Transaldolase/Fructose-6-phosphate aldolase HER15_04710 PF00106 short chain dehydrogenase HER15_04730 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HER15_04730 PF01488 Shikimate / quinate 5-dehydrogenase HER15_04730 PF08501 Shikimate dehydrogenase substrate binding domain HER15_04750 PF00814 Glycoprotease family HER15_04755 PF16385 Domain of unknown function HER15_04755 PF00884 Sulfatase HER15_04760 PF01427 D-ala-D-ala dipeptidase HER15_04770 PF00676 Dehydrogenase E1 component HER15_04775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HER15_04775 PF00364 Biotin-requiring enzyme HER15_04775 PF02817 e3 binding domain HER15_04830 PF01264 Chorismate synthase HER15_04840 PF01569 PAP2 superfamily HER15_04845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HER15_04850 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HER15_04850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HER15_04860 PF01368 DHH family HER15_04860 PF02272 DHHA1 domain HER15_04870 PF00334 Nucleoside diphosphate kinase HER15_04885 PF00011 Hsp20/alpha crystallin family HER15_04910 PF02463 RecF/RecN/SMC N terminal domain HER15_04920 PF00885 6,7-dimethyl-8-ribityllumazine synthase HER15_04930 PF08676 MutL C terminal dimerisation domain HER15_04930 PF01119 DNA mismatch repair protein, C-terminal domain HER15_04950 PF01266 FAD dependent oxidoreductase HER15_04990 PF00196 Bacterial regulatory proteins, luxR family HER15_04990 PF00072 Response regulator receiver domain HER15_04995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_04995 PF07730 Histidine kinase HER15_05015 PF00004 ATPase family associated with various cellular activities (AAA) HER15_05015 PF01434 Peptidase family M41 HER15_05015 PF17862 AAA+ lid domain HER15_05020 PF01168 Alanine racemase, N-terminal domain HER15_05025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HER15_05035 PF03992 Antibiotic biosynthesis monooxygenase HER15_05045 PF01938 TRAM domain HER15_05045 PF04055 Radical SAM superfamily HER15_05045 PF00919 Uncharacterized protein family UPF0004 HER15_05080 PF01266 FAD dependent oxidoreductase HER15_05090 PF07715 TonB-dependent Receptor Plug Domain HER15_05090 PF00593 TonB dependent receptor HER15_05095 PF01227 GTP cyclohydrolase I HER15_05100 PF03129 Anticodon binding domain HER15_05100 PF13393 Histidyl-tRNA synthetase HER15_05105 PF03631 Virulence factor BrkB HER15_05120 PF01432 Peptidase family M3 HER15_05125 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HER15_05125 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HER15_05135 PF00578 AhpC/TSA family HER15_05140 PF13640 2OG-Fe(II) oxygenase superfamily HER15_05140 PF18331 PKHD-type hydroxylase C-terminal domain HER15_05180 PF00145 C-5 cytosine-specific DNA methylase HER15_05245 PF02899 Phage integrase, N-terminal SAM-like domain HER15_05245 PF00589 Phage integrase family HER15_05280 PF01545 Cation efflux family HER15_05280 PF16916 Dimerisation domain of Zinc Transporter HER15_05290 PF00873 AcrB/AcrD/AcrF family HER15_05300 PF03061 Thioesterase superfamily HER15_05325 PF00027 Cyclic nucleotide-binding domain HER15_05325 PF00325 Bacterial regulatory proteins, crp family HER15_05330 PF02463 RecF/RecN/SMC N terminal domain HER15_05380 PF00245 Alkaline phosphatase HER15_05380 PF00245 Alkaline phosphatase HER15_05385 PF14322 Starch-binding associating with outer membrane HER15_05385 PF07980 SusD family HER15_05390 PF00593 TonB dependent receptor HER15_05390 PF07715 TonB-dependent Receptor Plug Domain HER15_05395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_05395 PF00512 His Kinase A (phospho-acceptor) domain HER15_05395 PF12833 Helix-turn-helix domain HER15_05395 PF00072 Response regulator receiver domain HER15_05395 PF07495 Y_Y_Y domain HER15_05395 PF07494 Two component regulator propeller HER15_05455 PF00144 Beta-lactamase HER15_05460 PF02926 THUMP domain HER15_05460 PF01170 Putative RNA methylase family UPF0020 HER15_05475 PF07883 Cupin domain HER15_05475 PF02130 Uncharacterized protein family UPF0054 HER15_05490 PF12464 Maltose acetyltransferase HER15_05490 PF14602 Hexapeptide repeat of succinyl-transferase HER15_05510 PF01047 MarR family HER15_05515 PF02566 OsmC-like protein HER15_05520 PF00881 Nitroreductase family HER15_05545 PF01243 Pyridoxamine 5'-phosphate oxidase HER15_05545 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HER15_05555 PF02541 Ppx/GppA phosphatase family HER15_05590 PF00005 ABC transporter HER15_05595 PF02405 Permease MlaE HER15_05600 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase HER15_05625 PF08534 Redoxin HER15_05650 PF00326 Prolyl oligopeptidase family HER15_05670 PF00582 Universal stress protein family HER15_05690 PF13746 4Fe-4S dicluster domain HER15_05690 PF12801 4Fe-4S binding domain HER15_05690 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HER15_05695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HER15_05695 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HER15_05705 PF00115 Cytochrome C and Quinol oxidase polypeptide I HER15_05715 PF06969 HemN C-terminal domain HER15_05715 PF04055 Radical SAM superfamily HER15_05720 PF01048 Phosphorylase superfamily HER15_05725 PF01791 DeoC/LacD family aldolase HER15_05730 PF00403 Heavy-metal-associated domain HER15_05745 PF04998 RNA polymerase Rpb1, domain 5 HER15_05745 PF05000 RNA polymerase Rpb1, domain 4 HER15_05745 PF04997 RNA polymerase Rpb1, domain 1 HER15_05745 PF00623 RNA polymerase Rpb1, domain 2 HER15_05745 PF04983 RNA polymerase Rpb1, domain 3 HER15_05750 PF04563 RNA polymerase beta subunit HER15_05750 PF04561 RNA polymerase Rpb2, domain 2 HER15_05750 PF04565 RNA polymerase Rpb2, domain 3 HER15_05750 PF10385 RNA polymerase beta subunit external 1 domain HER15_05750 PF00562 RNA polymerase Rpb2, domain 6 HER15_05750 PF04560 RNA polymerase Rpb2, domain 7 HER15_05755 PF00542 Ribosomal protein L7/L12 C-terminal domain HER15_05755 PF16320 Ribosomal protein L7/L12 dimerisation domain HER15_05760 PF00466 Ribosomal protein L10 HER15_05765 PF00687 Ribosomal protein L1p/L10e family HER15_05770 PF03946 Ribosomal protein L11, N-terminal domain HER15_05770 PF00298 Ribosomal protein L11, RNA binding domain HER15_05775 PF00467 KOW motif HER15_05775 PF02357 Transcription termination factor nusG HER15_05790 PF03144 Elongation factor Tu domain 2 HER15_05790 PF00009 Elongation factor Tu GTP binding domain HER15_05790 PF03143 Elongation factor Tu C-terminal domain HER15_05820 PF02899 Phage integrase, N-terminal SAM-like domain HER15_05820 PF00589 Phage integrase family HER15_05825 PF01165 Ribosomal protein S21 HER15_05830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER15_05830 PF02770 Acyl-CoA dehydrogenase, middle domain HER15_05830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER15_05840 PF01235 Sodium:alanine symporter family HER15_05845 PF04321 RmlD substrate binding domain HER15_05850 PF07885 Ion channel HER15_05850 PF02254 TrkA-N domain HER15_05860 PF17755 UvrA DNA-binding domain HER15_05860 PF17760 UvrA interaction domain HER15_05895 PF00664 ABC transporter transmembrane region HER15_05895 PF00005 ABC transporter HER15_05895 PF03412 Peptidase C39 family HER15_05925 PF03641 Possible lysine decarboxylase HER15_05935 PF02779 Transketolase, pyrimidine binding domain HER15_05935 PF02780 Transketolase, C-terminal domain HER15_05950 PF00881 Nitroreductase family HER15_05955 PF00474 Sodium:solute symporter family HER15_05970 PF02386 Cation transport protein HER15_05975 PF01810 LysE type translocator HER15_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER15_05980 PF03466 LysR substrate binding domain HER15_05990 PF00085 Thioredoxin HER15_05995 PF10417 C-terminal domain of 1-Cys peroxiredoxin HER15_05995 PF00578 AhpC/TSA family HER15_06000 PF00141 Peroxidase HER15_06025 PF02954 Bacterial regulatory protein, Fis family HER15_06025 PF00072 Response regulator receiver domain HER15_06025 PF00158 Sigma-54 interaction domain HER15_06030 PF12795 Mechanosensitive ion channel porin domain HER15_06030 PF12794 Mechanosensitive ion channel inner membrane domain 1 HER15_06030 PF00924 Mechanosensitive ion channel HER15_06040 PF00005 ABC transporter HER15_06040 PF13732 Domain of unknown function (DUF4162) HER15_06050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HER15_06050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HER15_06050 PF00378 Enoyl-CoA hydratase/isomerase HER15_06055 PF00108 Thiolase, N-terminal domain HER15_06055 PF02803 Thiolase, C-terminal domain HER15_06065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER15_06065 PF02770 Acyl-CoA dehydrogenase, middle domain HER15_06065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER15_06130 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_06155 PF00005 ABC transporter HER15_06195 PF12833 Helix-turn-helix domain HER15_06205 PF00664 ABC transporter transmembrane region HER15_06205 PF03412 Peptidase C39 family HER15_06205 PF00005 ABC transporter HER15_06275 PF00899 ThiF family HER15_06285 PF03449 Transcription elongation factor, N-terminal HER15_06285 PF01272 Transcription elongation factor, GreA/GreB, C-term HER15_06290 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HER15_06290 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HER15_06300 PF02954 Bacterial regulatory protein, Fis family HER15_06300 PF00072 Response regulator receiver domain HER15_06300 PF00158 Sigma-54 interaction domain HER15_06305 PF00512 His Kinase A (phospho-acceptor) domain HER15_06305 PF00989 PAS fold HER15_06305 PF08447 PAS fold HER15_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_06325 PF01812 5-formyltetrahydrofolate cyclo-ligase family HER15_06330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER15_06330 PF07497 Rho termination factor, RNA-binding domain HER15_06340 PF00072 Response regulator receiver domain HER15_06340 PF00196 Bacterial regulatory proteins, luxR family HER15_06350 PF00072 Response regulator receiver domain HER15_06350 PF09308 LuxQ, periplasmic HER15_06350 PF00512 His Kinase A (phospho-acceptor) domain HER15_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_06360 PF01416 tRNA pseudouridine synthase HER15_06365 PF00664 ABC transporter transmembrane region HER15_06365 PF00005 ABC transporter HER15_06375 PF02457 DisA bacterial checkpoint controller nucleotide-binding HER15_06380 PF00809 Pterin binding enzyme HER15_06395 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HER15_06425 PF00485 Phosphoribulokinase / Uridine kinase family HER15_06435 PF01642 Methylmalonyl-CoA mutase HER15_06435 PF02310 B12 binding domain HER15_06445 PF01642 Methylmalonyl-CoA mutase HER15_06445 PF02310 B12 binding domain HER15_06455 PF02666 Phosphatidylserine decarboxylase HER15_06460 PF05140 ResB-like family HER15_06460 PF01578 Cytochrome C assembly protein HER15_06475 PF01225 Mur ligase family, catalytic domain HER15_06475 PF02875 Mur ligase family, glutamate ligase domain HER15_06475 PF08245 Mur ligase middle domain HER15_06480 PF03781 Sulfatase-modifying factor enzyme 1 HER15_06490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HER15_06495 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HER15_06495 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HER15_06500 PF00117 Glutamine amidotransferase class-I HER15_06500 PF02540 NAD synthase HER15_06500 PF00958 GMP synthase C terminal domain HER15_06505 PF01476 LysM domain HER15_06505 PF01520 N-acetylmuramoyl-L-alanine amidase HER15_06510 PF16363 GDP-mannose 4,6 dehydratase HER15_06515 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HER15_06520 PF00483 Nucleotidyl transferase HER15_06525 PF00953 Glycosyl transferase family 4 HER15_06530 PF00535 Glycosyl transferase family 2 HER15_06545 PF00535 Glycosyl transferase family 2 HER15_06560 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_06560 PF12804 MobA-like NTP transferase domain HER15_06580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HER15_06580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HER15_06585 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_06600 PF01370 NAD dependent epimerase/dehydratase family HER15_06605 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HER15_06605 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HER15_06605 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HER15_06610 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HER15_06610 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HER15_06610 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HER15_06625 PF08245 Mur ligase middle domain HER15_06625 PF02875 Mur ligase family, glutamate ligase domain HER15_06635 PF02472 Biopolymer transport protein ExbD/TolR HER15_06640 PF01618 MotA/TolQ/ExbB proton channel family HER15_06645 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HER15_06645 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HER15_06650 PF03702 Anhydro-N-acetylmuramic acid kinase HER15_06655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER15_06655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER15_06655 PF02770 Acyl-CoA dehydrogenase, middle domain HER15_06660 PF01416 tRNA pseudouridine synthase HER15_06665 PF00871 Acetokinase family HER15_06670 PF01515 Phosphate acetyl/butaryl transferase HER15_06670 PF07085 DRTGG domain HER15_06730 PF00512 His Kinase A (phospho-acceptor) domain HER15_06730 PF08446 PAS fold HER15_06730 PF00360 Phytochrome region HER15_06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_06730 PF01590 GAF domain HER15_06735 PF03129 Anticodon binding domain HER15_06735 PF02824 TGS domain HER15_06735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HER15_06735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HER15_06740 PF00707 Translation initiation factor IF-3, C-terminal domain HER15_06740 PF05198 Translation initiation factor IF-3, N-terminal domain HER15_06745 PF01632 Ribosomal protein L35 HER15_06750 PF00453 Ribosomal protein L20 HER15_06765 PF01268 Formate--tetrahydrofolate ligase HER15_06770 PF07549 SecD/SecF GG Motif HER15_06770 PF02355 Protein export membrane protein HER15_06780 PF01018 GTP1/OBG HER15_06780 PF01926 50S ribosome-binding GTPase HER15_06800 PF07715 TonB-dependent Receptor Plug Domain HER15_06800 PF00593 TonB dependent receptor HER15_06810 PF06580 Histidine kinase HER15_06815 PF04397 LytTr DNA-binding domain HER15_06815 PF00072 Response regulator receiver domain HER15_06820 PF00877 NlpC/P60 family HER15_06825 PF02684 Lipid-A-disaccharide synthetase HER15_06835 PF01975 Survival protein SurE HER15_06845 PF17804 Tail specific protease N-terminal domain HER15_06845 PF03572 Peptidase family S41 HER15_06845 PF00595 PDZ domain HER15_06845 PF11818 C-terminal domain of tail specific protease (DUF3340) HER15_06875 PF05569 BlaR1 peptidase M56 HER15_06875 PF00905 Penicillin binding protein transpeptidase domain HER15_06890 PF01336 OB-fold nucleic acid binding domain HER15_06890 PF00152 tRNA synthetases class II (D, K and N) HER15_06910 PF00753 Metallo-beta-lactamase superfamily HER15_06910 PF13567 Domain of unknown function (DUF4131) HER15_06910 PF03772 Competence protein HER15_06915 PF02683 Cytochrome C biogenesis protein transmembrane region HER15_06915 PF11412 Disulphide bond corrector protein DsbC HER15_06920 PF00854 POT family HER15_06925 PF00854 POT family HER15_06930 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region HER15_06930 PF00326 Prolyl oligopeptidase family HER15_06935 PF00368 Hydroxymethylglutaryl-coenzyme A reductase HER15_06985 PF00849 RNA pseudouridylate synthase HER15_06985 PF01479 S4 domain HER15_07145 PF00004 ATPase family associated with various cellular activities (AAA) HER15_07145 PF02861 Clp amino terminal domain, pathogenicity island component HER15_07145 PF17871 AAA lid domain HER15_07145 PF10431 C-terminal, D2-small domain, of ClpB protein HER15_07145 PF07724 AAA domain (Cdc48 subfamily) HER15_07175 PF02142 MGS-like domain HER15_07175 PF01808 AICARFT/IMPCHase bienzyme HER15_07195 PF00905 Penicillin binding protein transpeptidase domain HER15_07195 PF03717 Penicillin-binding Protein dimerisation domain HER15_07200 PF01098 Cell cycle protein HER15_07205 PF01649 Ribosomal protein S20 HER15_07220 PF09180 Prolyl-tRNA synthetase, C-terminal HER15_07220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HER15_07220 PF03129 Anticodon binding domain HER15_07235 PF01106 NifU-like domain HER15_07240 PF01209 ubiE/COQ5 methyltransferase family HER15_07265 PF03979 Sigma-70 factor, region 1.1 HER15_07265 PF00140 Sigma-70 factor, region 1.2 HER15_07265 PF04542 Sigma-70 region 2 HER15_07265 PF04545 Sigma-70, region 4 HER15_07265 PF04539 Sigma-70 region 3 HER15_07270 PF00834 Ribulose-phosphate 3 epimerase family HER15_07280 PF00571 CBS domain HER15_07290 PF00085 Thioredoxin HER15_07295 PF01654 Cytochrome bd terminal oxidase subunit I HER15_07300 PF02322 Cytochrome bd terminal oxidase subunit II HER15_07315 PF00873 AcrB/AcrD/AcrF family HER15_07330 PF00072 Response regulator receiver domain HER15_07330 PF04397 LytTr DNA-binding domain HER15_07335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_07335 PF07694 5TMR of 5TMR-LYT HER15_07335 PF06580 Histidine kinase HER15_07365 PF00593 TonB dependent receptor HER15_07365 PF07715 TonB-dependent Receptor Plug Domain HER15_07380 PF09424 Yqey-like protein HER15_07385 PF12327 FtsZ family, C-terminal domain HER15_07385 PF00091 Tubulin/FtsZ family, GTPase domain HER15_07390 PF02491 SHS2 domain inserted in FTSA HER15_07400 PF01225 Mur ligase family, catalytic domain HER15_07400 PF02875 Mur ligase family, glutamate ligase domain HER15_07400 PF08245 Mur ligase middle domain HER15_07405 PF04101 Glycosyltransferase family 28 C-terminal domain HER15_07405 PF03033 Glycosyltransferase family 28 N-terminal domain HER15_07410 PF01098 Cell cycle protein HER15_07415 PF08245 Mur ligase middle domain HER15_07415 PF02875 Mur ligase family, glutamate ligase domain HER15_07420 PF00953 Glycosyl transferase family 4 HER15_07420 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HER15_07425 PF01225 Mur ligase family, catalytic domain HER15_07425 PF02875 Mur ligase family, glutamate ligase domain HER15_07425 PF08245 Mur ligase middle domain HER15_07430 PF03717 Penicillin-binding Protein dimerisation domain HER15_07430 PF00905 Penicillin binding protein transpeptidase domain HER15_07440 PF01795 MraW methylase family HER15_07445 PF02381 MraZ protein, putative antitoxin-like HER15_07450 PF00561 alpha/beta hydrolase fold HER15_07455 PF01926 50S ribosome-binding GTPase HER15_07460 PF01479 S4 domain HER15_07460 PF00849 RNA pseudouridylate synthase HER15_07465 PF00487 Fatty acid desaturase HER15_07470 PF00171 Aldehyde dehydrogenase family HER15_07485 PF01804 Penicillin amidase HER15_07505 PF02954 Bacterial regulatory protein, Fis family HER15_07505 PF00072 Response regulator receiver domain HER15_07505 PF00158 Sigma-54 interaction domain HER15_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_07510 PF00512 His Kinase A (phospho-acceptor) domain HER15_07510 PF18415 Histidine kinase receptor ArcB trans-membrane domain HER15_07510 PF01627 Hpt domain HER15_07510 PF00989 PAS fold HER15_07510 PF00072 Response regulator receiver domain HER15_07515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HER15_07530 PF00698 Acyl transferase domain HER15_07540 PF00924 Mechanosensitive ion channel HER15_07545 PF00528 Binding-protein-dependent transport system inner membrane component HER15_07545 PF12911 N-terminal TM domain of oligopeptide transport permease C HER15_07575 PF00440 Bacterial regulatory proteins, tetR family HER15_07580 PF02321 Outer membrane efflux protein HER15_07585 PF00873 AcrB/AcrD/AcrF family HER15_07610 PF00691 OmpA family HER15_07615 PF13091 PLD-like domain HER15_07615 PF13396 Phospholipase_D-nuclease N-terminal HER15_07630 PF00691 OmpA family HER15_07630 PF01389 OmpA-like transmembrane domain HER15_07635 PF00675 Insulinase (Peptidase family M16) HER15_07635 PF05193 Peptidase M16 inactive domain HER15_07650 PF00593 TonB dependent receptor HER15_07650 PF07715 TonB-dependent Receptor Plug Domain HER15_07670 PF07687 Peptidase dimerisation domain HER15_07670 PF01546 Peptidase family M20/M25/M40 HER15_07690 PF01037 Lrp/AsnC ligand binding domain HER15_07695 PF01053 Cys/Met metabolism PLP-dependent enzyme HER15_07700 PF03553 Na+/H+ antiporter family HER15_07720 PF01351 Ribonuclease HII HER15_07735 PF03831 PhnA domain HER15_07735 PF08274 PhnA Zinc-Ribbon HER15_07740 PF13302 Acetyltransferase (GNAT) domain HER15_07745 PF05239 PRC-barrel domain HER15_07745 PF01782 RimM N-terminal domain HER15_07750 PF00886 Ribosomal protein S16 HER15_07755 PF00313 'Cold-shock' DNA-binding domain HER15_07760 PF01336 OB-fold nucleic acid binding domain HER15_07760 PF02811 PHP domain HER15_07760 PF07733 Bacterial DNA polymerase III alpha NTPase domain HER15_07760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HER15_07760 PF14579 Helix-hairpin-helix motif HER15_07825 PF04717 Type VI secretion system, phage-baseplate injector HER15_07865 PF00005 ABC transporter HER15_07870 PF00186 Dihydrofolate reductase HER15_07880 PF00303 Thymidylate synthase HER15_07890 PF07662 Na+ dependent nucleoside transporter C-terminus HER15_07890 PF01773 Na+ dependent nucleoside transporter N-terminus HER15_07890 PF07670 Nucleoside recognition HER15_07900 PF01012 Electron transfer flavoprotein domain HER15_07900 PF00766 Electron transfer flavoprotein FAD-binding domain HER15_07905 PF01012 Electron transfer flavoprotein domain HER15_07910 PF00364 Biotin-requiring enzyme HER15_07910 PF02779 Transketolase, pyrimidine binding domain HER15_07910 PF02780 Transketolase, C-terminal domain HER15_07915 PF07715 TonB-dependent Receptor Plug Domain HER15_07915 PF00593 TonB dependent receptor HER15_07920 PF00719 Inorganic pyrophosphatase HER15_07925 PF03030 Inorganic H+ pyrophosphatase HER15_07930 PF04715 Anthranilate synthase component I, N terminal region HER15_07930 PF00425 chorismate binding enzyme HER15_07940 PF12146 Serine aminopeptidase, S33 HER15_07945 PF01171 PP-loop family HER15_07950 PF02683 Cytochrome C biogenesis protein transmembrane region HER15_08010 PF02810 SEC-C motif HER15_08010 PF07517 SecA DEAD-like domain HER15_08010 PF01043 SecA preprotein cross-linking domain HER15_08010 PF07516 SecA Wing and Scaffold domain HER15_08015 PF00589 Phage integrase family HER15_08035 PF00665 Integrase core domain HER15_08050 PF08534 Redoxin HER15_08060 PF00210 Ferritin-like domain HER15_08065 PF05221 S-adenosyl-L-homocysteine hydrolase HER15_08065 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HER15_08080 PF04973 Nicotinamide mononucleotide transporter HER15_08130 PF01039 Carboxyl transferase domain HER15_08135 PF02785 Biotin carboxylase C-terminal domain HER15_08135 PF00289 Biotin carboxylase, N-terminal domain HER15_08135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER15_08140 PF18140 Propionyl-coenzyme A carboxylase BT domain HER15_08140 PF02785 Biotin carboxylase C-terminal domain HER15_08140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER15_08140 PF00364 Biotin-requiring enzyme HER15_08140 PF00289 Biotin carboxylase, N-terminal domain HER15_08150 PF00970 Oxidoreductase FAD-binding domain HER15_08150 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_08150 PF00175 Oxidoreductase NAD-binding domain HER15_08155 PF02508 Rnf-Nqr subunit, membrane protein HER15_08160 PF02508 Rnf-Nqr subunit, membrane protein HER15_08165 PF04205 FMN-binding domain HER15_08170 PF03116 NQR2, RnfD, RnfE family HER15_08175 PF11973 NQRA C-terminal domain HER15_08175 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HER15_08180 PF03150 Di-haem cytochrome c peroxidase HER15_08180 PF00034 Cytochrome c HER15_08205 PF04379 ApaG domain HER15_08235 PF00171 Aldehyde dehydrogenase family HER15_08240 PF04960 Glutaminase HER15_08255 PF00270 DEAD/DEAH box helicase HER15_08255 PF00271 Helicase conserved C-terminal domain HER15_08275 PF02527 rRNA small subunit methyltransferase G HER15_08280 PF00487 Fatty acid desaturase HER15_08285 PF00155 Aminotransferase class I and II HER15_08290 PF00581 Rhodanese-like domain HER15_08295 PF00753 Metallo-beta-lactamase superfamily HER15_08295 PF00581 Rhodanese-like domain HER15_08300 PF01740 STAS domain HER15_08300 PF00916 Sulfate permease family HER15_08305 PF17864 RuvB AAA lid domain HER15_08305 PF05491 RuvB C-terminal winged helix domain HER15_08305 PF05496 Holliday junction DNA helicase RuvB P-loop domain HER15_08310 PF00115 Cytochrome C and Quinol oxidase polypeptide I HER15_08315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HER15_08315 PF02790 Cytochrome C oxidase subunit II, transmembrane domain HER15_08315 PF00034 Cytochrome c HER15_08340 PF00037 4Fe-4S binding domain HER15_08340 PF13247 4Fe-4S dicluster domain HER15_08345 PF00034 Cytochrome c HER15_08355 PF00156 Phosphoribosyl transferase domain HER15_08365 PF02657 Fe-S metabolism associated domain HER15_08370 PF01883 Iron-sulfur cluster assembly protein HER15_08390 PF00571 CBS domain HER15_08390 PF01595 Cyclin M transmembrane N-terminal domain HER15_08410 PF16360 GTP-binding GTPase Middle Region HER15_08410 PF13167 GTP-binding GTPase N-terminal HER15_08410 PF01926 50S ribosome-binding GTPase HER15_08415 PF03167 Uracil DNA glycosylase superfamily HER15_08425 PF00270 DEAD/DEAH box helicase HER15_08425 PF00271 Helicase conserved C-terminal domain HER15_08440 PF01026 TatD related DNase HER15_08445 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HER15_08445 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HER15_08450 PF14437 MafB19-like deaminase HER15_08455 PF00149 Calcineurin-like phosphoesterase HER15_08460 PF07715 TonB-dependent Receptor Plug Domain HER15_08460 PF00593 TonB dependent receptor HER15_08470 PF00593 TonB dependent receptor HER15_08470 PF07715 TonB-dependent Receptor Plug Domain HER15_08475 PF07726 ATPase family associated with various cellular activities (AAA) HER15_08475 PF17863 AAA lid domain HER15_08480 PF01882 Protein of unknown function DUF58 HER15_08490 PF07584 Aerotolerance regulator N-terminal HER15_08490 PF13519 von Willebrand factor type A domain HER15_08500 PF07584 Aerotolerance regulator N-terminal HER15_08500 PF13519 von Willebrand factor type A domain HER15_08525 PF01740 STAS domain HER15_08525 PF00916 Sulfate permease family HER15_08530 PF00484 Carbonic anhydrase HER15_08535 PF00484 Carbonic anhydrase HER15_08560 PF02021 Uncharacterised protein family UPF0102 HER15_08570 PF02016 LD-carboxypeptidase N-terminal domain HER15_08570 PF17676 LD-carboxypeptidase C-terminal domain HER15_08575 PF08264 Anticodon-binding domain of tRNA HER15_08575 PF09334 tRNA synthetases class I (M) HER15_08575 PF01588 Putative tRNA binding domain HER15_08585 PF17674 HHH domain HER15_08585 PF16921 Tex protein YqgF-like domain HER15_08585 PF00575 S1 RNA binding domain HER15_08585 PF09371 Tex-like protein N-terminal domain HER15_08600 PF00436 Single-strand binding protein family HER15_08615 PF00478 IMP dehydrogenase / GMP reductase domain HER15_08615 PF00571 CBS domain HER15_08625 PF00224 Pyruvate kinase, barrel domain HER15_08625 PF00391 PEP-utilising enzyme, mobile domain HER15_08625 PF02887 Pyruvate kinase, alpha/beta domain HER15_08635 PF14622 Ribonuclease-III-like HER15_08635 PF00035 Double-stranded RNA binding motif HER15_08640 PF00109 Beta-ketoacyl synthase, N-terminal domain HER15_08640 PF02801 Beta-ketoacyl synthase, C-terminal domain HER15_08645 PF00550 Phosphopantetheine attachment site HER15_08650 PF00551 Formyl transferase HER15_08655 PF01693 Caulimovirus viroplasmin HER15_08675 PF00924 Mechanosensitive ion channel HER15_08675 PF05552 Conserved TM helix HER15_08680 PF00814 Glycoprotease family HER15_08695 PF04238 Protein of unknown function (DUF420) HER15_08700 PF02630 SCO1/SenC HER15_08715 PF00510 Cytochrome c oxidase subunit III HER15_08720 PF00510 Cytochrome c oxidase subunit III HER15_08725 PF01040 UbiA prenyltransferase family HER15_08755 PF02627 Carboxymuconolactone decarboxylase family HER15_08765 PF17773 UPF0176 acylphosphatase like domain HER15_08765 PF12368 Rhodanase C-terminal HER15_08765 PF00581 Rhodanese-like domain HER15_08775 PF01048 Phosphorylase superfamily HER15_08780 PF01209 ubiE/COQ5 methyltransferase family HER15_08785 PF02016 LD-carboxypeptidase N-terminal domain HER15_08785 PF17676 LD-carboxypeptidase C-terminal domain HER15_08790 PF00912 Transglycosylase HER15_08790 PF00905 Penicillin binding protein transpeptidase domain HER15_08800 PF18073 Rubredoxin metal binding domain HER15_08810 PF02261 Aspartate decarboxylase HER15_08815 PF02569 Pantoate-beta-alanine ligase HER15_08820 PF00534 Glycosyl transferases group 1 HER15_08820 PF08323 Starch synthase catalytic domain HER15_08830 PF01380 SIS domain HER15_08845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HER15_08845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HER15_08850 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HER15_08850 PF01409 tRNA synthetases class II core domain (F) HER15_08860 PF01235 Sodium:alanine symporter family HER15_08870 PF02938 GAD domain HER15_08870 PF00152 tRNA synthetases class II (D, K and N) HER15_08870 PF01336 OB-fold nucleic acid binding domain HER15_08875 PF00654 Voltage gated chloride channel HER15_08880 PF03009 Glycerophosphoryl diester phosphodiesterase family HER15_08885 PF03606 C4-dicarboxylate anaerobic carrier HER15_08900 PF00266 Aminotransferase class-V HER15_08915 PF02630 SCO1/SenC HER15_08920 PF13180 PDZ domain HER15_08920 PF17820 PDZ domain HER15_08920 PF02163 Peptidase family M50 HER15_08930 PF03447 Homoserine dehydrogenase, NAD binding domain HER15_08930 PF00742 Homoserine dehydrogenase HER15_08930 PF00696 Amino acid kinase family HER15_08940 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HER15_08945 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HER15_08945 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HER15_08955 PF00440 Bacterial regulatory proteins, tetR family HER15_08955 PF08361 MAATS-type transcriptional repressor, C-terminal region HER15_08960 PF01053 Cys/Met metabolism PLP-dependent enzyme HER15_09000 PF01522 Polysaccharide deacetylase HER15_09005 PF00085 Thioredoxin HER15_09010 PF00149 Calcineurin-like phosphoesterase HER15_09010 PF10518 TAT (twin-arginine translocation) pathway signal sequence HER15_09015 PF01367 5'-3' exonuclease, C-terminal SAM fold HER15_09015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HER15_09015 PF00476 DNA polymerase family A HER15_09015 PF01612 3'-5' exonuclease HER15_09020 PF13280 WYL domain HER15_09020 PF08279 HTH domain HER15_09040 PF00156 Phosphoribosyl transferase domain HER15_09045 PF00398 Ribosomal RNA adenine dimethylase HER15_09060 PF03129 Anticodon binding domain HER15_09075 PF00593 TonB dependent receptor HER15_09075 PF07715 TonB-dependent Receptor Plug Domain HER15_09080 PF06574 FAD synthetase HER15_09080 PF01687 Riboflavin kinase HER15_09090 PF02403 Seryl-tRNA synthetase N-terminal domain HER15_09090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HER15_09115 PF00398 Ribosomal RNA adenine dimethylase HER15_09120 PF01769 Divalent cation transporter HER15_09120 PF00571 CBS domain HER15_09120 PF03448 MgtE intracellular N domain HER15_09130 PF00970 Oxidoreductase FAD-binding domain HER15_09130 PF00175 Oxidoreductase NAD-binding domain HER15_09130 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_09150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HER15_09155 PF02780 Transketolase, C-terminal domain HER15_09155 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HER15_09155 PF02779 Transketolase, pyrimidine binding domain HER15_09170 PF00231 ATP synthase HER15_09175 PF02874 ATP synthase alpha/beta family, beta-barrel domain HER15_09175 PF00306 ATP synthase alpha/beta chain, C terminal domain HER15_09175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER15_09180 PF00213 ATP synthase delta (OSCP) subunit HER15_09185 PF00430 ATP synthase B/B' CF(0) HER15_09190 PF00137 ATP synthase subunit C HER15_09195 PF00119 ATP synthase A chain HER15_09220 PF00005 ABC transporter HER15_09235 PF17961 Bacterial Ig domain HER15_09235 PF05737 Collagen binding domain HER15_09235 PF01476 LysM domain HER15_09240 PF03372 Endonuclease/Exonuclease/phosphatase family HER15_09245 PF01144 Coenzyme A transferase HER15_09250 PF01144 Coenzyme A transferase HER15_09255 PF00912 Transglycosylase HER15_09255 PF00905 Penicillin binding protein transpeptidase domain HER15_09260 PF14109 GldH lipoprotein HER15_09265 PF04468 PSP1 C-terminal conserved region HER15_09270 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HER15_09270 PF00749 tRNA synthetases class I (E and Q), catalytic domain HER15_09285 PF00082 Subtilase family HER15_09290 PF00753 Metallo-beta-lactamase superfamily HER15_09310 PF14028 Lantibiotic biosynthesis dehydratase C-term HER15_09310 PF04738 Lantibiotic dehydratase, N terminus HER15_09340 PF00664 ABC transporter transmembrane region HER15_09340 PF00005 ABC transporter HER15_09340 PF03412 Peptidase C39 family HER15_09350 PF02152 Dihydroneopterin aldolase HER15_09360 PF08443 RimK-like ATP-grasp domain HER15_09360 PF18030 RimK PreATP-grasp domain HER15_09370 PF00271 Helicase conserved C-terminal domain HER15_09370 PF00270 DEAD/DEAH box helicase HER15_09380 PF00557 Metallopeptidase family M24 HER15_09380 PF05195 Aminopeptidase P, N-terminal domain HER15_09460 PF00561 alpha/beta hydrolase fold HER15_09475 PF00890 FAD binding domain HER15_09475 PF02910 Fumarate reductase flavoprotein C-term HER15_09480 PF13085 2Fe-2S iron-sulfur cluster binding domain HER15_09495 PF00106 short chain dehydrogenase HER15_09520 PF00005 ABC transporter HER15_09525 PF08443 RimK-like ATP-grasp domain HER15_09525 PF18030 RimK PreATP-grasp domain HER15_09535 PF05649 Peptidase family M13 HER15_09535 PF01431 Peptidase family M13 HER15_09540 PF00326 Prolyl oligopeptidase family HER15_09540 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HER15_09545 PF00085 Thioredoxin HER15_09555 PF00317 Ribonucleotide reductase, all-alpha domain HER15_09555 PF03477 ATP cone domain HER15_09555 PF02867 Ribonucleotide reductase, barrel domain HER15_09560 PF13286 Phosphohydrolase-associated domain HER15_09560 PF01966 HD domain HER15_09570 PF01914 MarC family integral membrane protein HER15_09580 PF04231 Endonuclease I HER15_09585 PF00072 Response regulator receiver domain HER15_09585 PF04397 LytTr DNA-binding domain HER15_09605 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HER15_09605 PF01266 FAD dependent oxidoreductase HER15_09625 PF04030 D-arabinono-1,4-lactone oxidase HER15_09625 PF01565 FAD binding domain HER15_09640 PF08281 Sigma-70, region 4 HER15_09640 PF04542 Sigma-70 region 2 HER15_09650 PF01112 Asparaginase HER15_09655 PF00171 Aldehyde dehydrogenase family HER15_09670 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HER15_09670 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HER15_09675 PF00692 dUTPase HER15_09680 PF00154 recA bacterial DNA recombination protein HER15_09685 PF00849 RNA pseudouridylate synthase HER15_09695 PF13673 Acetyltransferase (GNAT) domain HER15_09700 PF02502 Ribose/Galactose Isomerase HER15_09710 PF00781 Diacylglycerol kinase catalytic domain HER15_09715 PF00575 S1 RNA binding domain HER15_09715 PF00773 RNB domain HER15_09715 PF17876 Cold shock domain HER15_09715 PF08206 Ribonuclease B OB domain HER15_09730 PF02416 mttA/Hcf106 family HER15_09735 PF01906 Putative heavy-metal-binding HER15_09750 PF08003 Protein of unknown function (DUF1698) HER15_09755 PF01134 Glucose inhibited division protein A HER15_09755 PF13932 GidA associated domain HER15_09760 PF02130 Uncharacterized protein family UPF0054 HER15_09780 PF00749 tRNA synthetases class I (E and Q), catalytic domain HER15_09815 PF02086 D12 class N6 adenine-specific DNA methyltransferase HER15_09825 PF00271 Helicase conserved C-terminal domain HER15_09825 PF03461 TRCF domain HER15_09825 PF02559 CarD-like/TRCF domain HER15_09825 PF00270 DEAD/DEAH box helicase HER15_09825 PF17757 UvrB interaction domain HER15_09830 PF01541 GIY-YIG catalytic domain HER15_09835 PF00892 EamA-like transporter family HER15_09850 PF02481 DNA recombination-mediator protein A HER15_09850 PF17782 DprA winged helix domain HER15_09865 PF01594 AI-2E family transporter HER15_09885 PF00483 Nucleotidyl transferase HER15_09890 PF00005 ABC transporter HER15_09890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HER15_09895 PF00041 Fibronectin type III domain HER15_09895 PF00704 Glycosyl hydrolases family 18 HER15_09900 PF07504 Fungalysin/Thermolysin Propeptide Motif HER15_09900 PF03413 Peptidase propeptide and YPEB domain HER15_09900 PF01447 Thermolysin metallopeptidase, catalytic domain HER15_09900 PF02868 Thermolysin metallopeptidase, alpha-helical domain HER15_09905 PF00553 Cellulose binding domain HER15_09905 PF00041 Fibronectin type III domain HER15_09905 PF02011 Glycosyl hydrolase family 48 HER15_09910 PF12848 ABC transporter HER15_09910 PF00005 ABC transporter HER15_09910 PF16326 ABC transporter C-terminal domain HER15_09925 PF00072 Response regulator receiver domain HER15_09925 PF00486 Transcriptional regulatory protein, C terminal HER15_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_09930 PF00512 His Kinase A (phospho-acceptor) domain HER15_09930 PF00989 PAS fold HER15_09930 PF16736 Single Cache-like HER15_09935 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HER15_09935 PF02843 Phosphoribosylglycinamide synthetase, C domain HER15_09935 PF02844 Phosphoribosylglycinamide synthetase, N domain HER15_09945 PF13180 PDZ domain HER15_09945 PF03572 Peptidase family S41 HER15_09950 PF00825 Ribonuclease P HER15_09955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HER15_09955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HER15_09955 PF02770 Acyl-CoA dehydrogenase, middle domain HER15_09965 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HER15_09965 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HER15_09975 PF07730 Histidine kinase HER15_09975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_09975 PF05384 Sensor protein DegS HER15_09980 PF00588 SpoU rRNA Methylase family HER15_09980 PF08032 RNA 2'-O ribose methyltransferase substrate binding HER15_09985 PF05188 MutS domain II HER15_09985 PF00488 MutS domain V HER15_09985 PF05190 MutS family domain IV HER15_09985 PF01624 MutS domain I HER15_09985 PF05192 MutS domain III HER15_09990 PF01227 GTP cyclohydrolase I HER15_10010 PF00378 Enoyl-CoA hydratase/isomerase HER15_10015 PF04116 Fatty acid hydroxylase superfamily HER15_10020 PF12833 Helix-turn-helix domain HER15_10030 PF01242 6-pyruvoyl tetrahydropterin synthase HER15_10035 PF01195 Peptidyl-tRNA hydrolase HER15_10040 PF01386 Ribosomal L25p family HER15_10040 PF14693 Ribosomal protein TL5, C-terminal domain HER15_10045 PF14572 Phosphoribosyl synthetase-associated domain HER15_10045 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HER15_10055 PF00141 Peroxidase HER15_10060 PF01967 MoaC family HER15_10060 PF12804 MobA-like NTP transferase domain HER15_10065 PF01967 MoaC family HER15_10075 PF03454 MoeA C-terminal region (domain IV) HER15_10075 PF03453 MoeA N-terminal region (domain I and II) HER15_10075 PF00994 Probable molybdopterin binding domain HER15_10080 PF06463 Molybdenum Cofactor Synthesis C HER15_10080 PF04055 Radical SAM superfamily HER15_10085 PF08459 UvrC Helix-hairpin-helix N-terminal HER15_10085 PF01541 GIY-YIG catalytic domain HER15_10090 PF01734 Patatin-like phospholipase HER15_10095 PF00575 S1 RNA binding domain HER15_10095 PF10150 Ribonuclease E/G family HER15_10100 PF00216 Bacterial DNA-binding protein HER15_10120 PF00593 TonB dependent receptor HER15_10120 PF07715 TonB-dependent Receptor Plug Domain HER15_10125 PF00730 HhH-GPD superfamily base excision DNA repair protein HER15_10125 PF14815 NUDIX domain HER15_10130 PF00436 Single-strand binding protein family HER15_10135 PF00571 CBS domain HER15_10135 PF03471 Transporter associated domain HER15_10160 PF00892 EamA-like transporter family HER15_10165 PF00675 Insulinase (Peptidase family M16) HER15_10165 PF05193 Peptidase M16 inactive domain HER15_10170 PF00675 Insulinase (Peptidase family M16) HER15_10170 PF05193 Peptidase M16 inactive domain HER15_10175 PF00829 Ribosomal prokaryotic L21 protein HER15_10180 PF01016 Ribosomal L27 protein HER15_10185 PF04397 LytTr DNA-binding domain HER15_10185 PF00072 Response regulator receiver domain HER15_10190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_10190 PF06580 Histidine kinase HER15_10195 PF00817 impB/mucB/samB family HER15_10195 PF11799 impB/mucB/samB family C-terminal domain HER15_10205 PF01136 Peptidase family U32 HER15_10210 PF17773 UPF0176 acylphosphatase like domain HER15_10210 PF00581 Rhodanese-like domain HER15_10210 PF12368 Rhodanase C-terminal HER15_10215 PF01118 Semialdehyde dehydrogenase, NAD binding domain HER15_10215 PF02774 Semialdehyde dehydrogenase, dimerisation domain HER15_10220 PF01966 HD domain HER15_10225 PF00378 Enoyl-CoA hydratase/isomerase HER15_10230 PF00672 HAMP domain HER15_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_10230 PF00512 His Kinase A (phospho-acceptor) domain HER15_10240 PF09115 DNA polymerase III, delta subunit, C terminal HER15_10250 PF07664 Ferrous iron transport protein B C terminus HER15_10250 PF02421 Ferrous iron transport protein B HER15_10250 PF07670 Nucleoside recognition HER15_10265 PF05525 Branched-chain amino acid transport protein HER15_10290 PF02390 Putative methyltransferase HER15_10305 PF01883 Iron-sulfur cluster assembly protein HER15_10305 PF10609 NUBPL iron-transfer P-loop NTPase HER15_10310 PF01521 Iron-sulphur cluster biosynthesis HER15_10310 PF01106 NifU-like domain HER15_10315 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_10320 PF04116 Fatty acid hydroxylase superfamily HER15_10325 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_10330 PF00282 Pyridoxal-dependent decarboxylase conserved domain HER15_10335 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) HER15_10345 PF06276 Ferric iron reductase FhuF-like transporter HER15_10345 PF04183 IucA / IucC family HER15_10355 PF06276 Ferric iron reductase FhuF-like transporter HER15_10355 PF04183 IucA / IucC family HER15_10370 PF07859 alpha/beta hydrolase fold HER15_10380 PF00378 Enoyl-CoA hydratase/isomerase HER15_10405 PF07715 TonB-dependent Receptor Plug Domain HER15_10405 PF00593 TonB dependent receptor HER15_10420 PF04209 homogentisate 1,2-dioxygenase HER15_10425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HER15_10430 PF03301 Tryptophan 2,3-dioxygenase HER15_10440 PF01551 Peptidase family M23 HER15_10440 PF08460 Bacterial SH3 domain HER15_10445 PF00342 Phosphoglucose isomerase HER15_10450 PF00593 TonB dependent receptor HER15_10450 PF07715 TonB-dependent Receptor Plug Domain HER15_10470 PF00795 Carbon-nitrogen hydrolase HER15_10490 PF02391 MoaE protein HER15_10495 PF00162 Phosphoglycerate kinase HER15_10500 PF00248 Aldo/keto reductase family HER15_10515 PF00579 tRNA synthetases class I (W and Y) HER15_10525 PF03006 Haemolysin-III related HER15_10535 PF01928 CYTH domain HER15_10540 PF11967 Recombination protein O N terminal HER15_10540 PF02565 Recombination protein O C terminal HER15_10545 PF00593 TonB dependent receptor HER15_10545 PF07715 TonB-dependent Receptor Plug Domain HER15_10550 PF12823 Domain of unknown function (DUF3817) HER15_10570 PF08331 Domain of unknown function (DUF1730) HER15_10575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER15_10575 PF08447 PAS fold HER15_10580 PF08447 PAS fold HER15_10580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HER15_10585 PF00390 Malic enzyme, N-terminal domain HER15_10585 PF01515 Phosphate acetyl/butaryl transferase HER15_10585 PF03949 Malic enzyme, NAD binding domain HER15_10590 PF07499 RuvA, C-terminal domain HER15_10590 PF01330 RuvA N terminal domain HER15_10600 PF01597 Glycine cleavage H-protein HER15_10620 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_10635 PF00535 Glycosyl transferase family 2 HER15_10650 PF04324 BFD-like [2Fe-2S] binding domain HER15_10650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HER15_10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_10650 PF18267 Rubredoxin NAD+ reductase C-terminal domain HER15_10670 PF10459 Peptidase S46 HER15_10695 PF07715 TonB-dependent Receptor Plug Domain HER15_10695 PF00593 TonB dependent receptor HER15_10715 PF00535 Glycosyl transferase family 2 HER15_10725 PF01979 Amidohydrolase family HER15_10740 PF00579 tRNA synthetases class I (W and Y) HER15_10755 PF00034 Cytochrome c HER15_10755 PF03150 Di-haem cytochrome c peroxidase HER15_10780 PF08264 Anticodon-binding domain of tRNA HER15_10780 PF13603 Leucyl-tRNA synthetase, Domain 2 HER15_10780 PF09334 tRNA synthetases class I (M) HER15_10825 PF04151 Bacterial pre-peptidase C-terminal domain HER15_10825 PF04389 Peptidase family M28 HER15_10850 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HER15_10850 PF17768 RecJ OB domain HER15_10850 PF01368 DHH family HER15_10850 PF02272 DHHA1 domain HER15_10865 PF01741 Large-conductance mechanosensitive channel, MscL HER15_10870 PF00842 Alanine racemase, C-terminal domain HER15_10870 PF01168 Alanine racemase, N-terminal domain HER15_10875 PF00265 Thymidine kinase HER15_10895 PF02576 RimP N-terminal domain HER15_10900 PF13184 NusA-like KH domain HER15_10900 PF08529 NusA N-terminal domain HER15_10905 PF00009 Elongation factor Tu GTP binding domain HER15_10905 PF11987 Translation-initiation factor 2 HER15_10905 PF04760 Translation initiation factor IF-2, N-terminal region HER15_10930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER15_10930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER15_10935 PF02548 Ketopantoate hydroxymethyltransferase HER15_10950 PF04542 Sigma-70 region 2 HER15_10950 PF08281 Sigma-70, region 4 HER15_10960 PF01596 O-methyltransferase HER15_10980 PF00593 TonB dependent receptor HER15_10980 PF07715 TonB-dependent Receptor Plug Domain HER15_10990 PF02535 ZIP Zinc transporter HER15_10995 PF12705 PD-(D/E)XK nuclease superfamily HER15_10995 PF00580 UvrD/REP helicase N-terminal domain HER15_10995 PF13361 UvrD-like helicase C-terminal domain HER15_11000 PF00155 Aminotransferase class I and II HER15_11005 PF05736 OprF membrane domain HER15_11005 PF00691 OmpA family HER15_11010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HER15_11010 PF02874 ATP synthase alpha/beta family, beta-barrel domain HER15_11015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HER15_11020 PF02416 mttA/Hcf106 family HER15_11065 PF06968 Biotin and Thiamin Synthesis associated domain HER15_11065 PF04055 Radical SAM superfamily HER15_11080 PF00202 Aminotransferase class-III HER15_11100 PF00155 Aminotransferase class I and II HER15_11135 PF05593 RHS Repeat HER15_11135 PF03527 RHS protein HER15_11170 PF03527 RHS protein HER15_11170 PF05593 RHS Repeat HER15_11185 PF16870 2-oxoglutarate dehydrogenase C-terminal HER15_11185 PF02779 Transketolase, pyrimidine binding domain HER15_11185 PF16078 2-oxoglutarate dehydrogenase N-terminus HER15_11185 PF00676 Dehydrogenase E1 component HER15_11190 PF00364 Biotin-requiring enzyme HER15_11190 PF02817 e3 binding domain HER15_11190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HER15_11205 PF00756 Putative esterase HER15_11220 PF01458 Uncharacterized protein family (UPF0051) HER15_11225 PF00005 ABC transporter HER15_11230 PF01458 Uncharacterized protein family (UPF0051) HER15_11235 PF01521 Iron-sulphur cluster biosynthesis HER15_11240 PF03150 Di-haem cytochrome c peroxidase HER15_11260 PF00586 AIR synthase related protein, N-terminal domain HER15_11260 PF02769 AIR synthase related protein, C-terminal domain HER15_11265 PF04972 BON domain HER15_11265 PF01476 LysM domain HER15_11275 PF08340 Domain of unknown function (DUF1732) HER15_11275 PF03755 YicC-like family, N-terminal region HER15_11280 PF00625 Guanylate kinase HER15_11285 PF01467 Cytidylyltransferase-like HER15_11290 PF01476 LysM domain HER15_11290 PF01551 Peptidase family M23 HER15_11300 PF03473 MOSC domain HER15_11300 PF03475 3-alpha domain HER15_11310 PF00440 Bacterial regulatory proteins, tetR family HER15_11310 PF16925 Tetracyclin repressor-like, C-terminal domain HER15_11315 PF03572 Peptidase family S41 HER15_11315 PF13180 PDZ domain HER15_11330 PF01037 Lrp/AsnC ligand binding domain HER15_11330 PF13404 AsnC-type helix-turn-helix domain HER15_11345 PF13443 Cro/C1-type HTH DNA-binding domain HER15_11350 PF11798 IMS family HHH motif HER15_11350 PF13438 Domain of unknown function (DUF4113) HER15_11350 PF11799 impB/mucB/samB family C-terminal domain HER15_11350 PF00817 impB/mucB/samB family HER15_11355 PF00717 Peptidase S24-like HER15_11360 PF06491 Disulphide isomerase HER15_11365 PF00226 DnaJ domain HER15_11365 PF05099 Tellurite resistance protein TerB HER15_11370 PF00223 Photosystem I psaA/psaB protein HER15_11370 PF00691 OmpA family HER15_11375 PF00133 tRNA synthetases class I (I, L, M and V) HER15_11375 PF08264 Anticodon-binding domain of tRNA HER15_11395 PF01252 Signal peptidase (SPase) II HER15_11415 PF04143 Sulphur transport HER15_11420 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HER15_11420 PF02390 Putative methyltransferase HER15_11425 PF02785 Biotin carboxylase C-terminal domain HER15_11425 PF00289 Biotin carboxylase, N-terminal domain HER15_11425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HER15_11430 PF00364 Biotin-requiring enzyme HER15_11435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HER15_11435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HER15_11440 PF01783 Ribosomal L32p protein family HER15_11450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HER15_11455 PF00677 Lumazine binding domain HER15_11480 PF02028 BCCT, betaine/carnitine/choline family transporter HER15_11495 PF00348 Polyprenyl synthetase HER15_11500 PF00440 Bacterial regulatory proteins, tetR family HER15_11500 PF16859 Tetracyclin repressor-like, C-terminal domain HER15_11510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HER15_11510 PF00529 HlyD membrane-fusion protein of T1SS HER15_11515 PF00873 AcrB/AcrD/AcrF family HER15_11530 PF01370 NAD dependent epimerase/dehydratase family HER15_11545 PF01509 TruB family pseudouridylate synthase (N terminal domain) HER15_11550 PF02673 Bacitracin resistance protein BacA HER15_11560 PF18075 FtsX extracellular domain HER15_11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_11590 PF07730 Histidine kinase HER15_11595 PF00196 Bacterial regulatory proteins, luxR family HER15_11595 PF00072 Response regulator receiver domain HER15_11600 PF02033 Ribosome-binding factor A HER15_11605 PF02687 FtsX-like permease family HER15_11605 PF12704 MacB-like periplasmic core domain HER15_11610 PF01207 Dihydrouridine synthase (Dus) HER15_11620 PF04055 Radical SAM superfamily HER15_11620 PF13186 Iron-sulfur cluster-binding domain HER15_11630 PF00679 Elongation factor G C-terminus HER15_11630 PF00009 Elongation factor Tu GTP binding domain HER15_11630 PF03144 Elongation factor Tu domain 2 HER15_11630 PF06421 GTP-binding protein LepA C-terminus HER15_11645 PF00710 Asparaginase, N-terminal HER15_11645 PF17763 Glutaminase/Asparaginase C-terminal domain HER15_11650 PF01618 MotA/TolQ/ExbB proton channel family HER15_11680 PF00309 Sigma-54 factor, Activator interacting domain (AID) HER15_11680 PF04963 Sigma-54 factor, core binding domain HER15_11680 PF04552 Sigma-54, DNA binding domain HER15_11685 PF00152 tRNA synthetases class II (D, K and N) HER15_11685 PF01336 OB-fold nucleic acid binding domain HER15_11695 PF01765 Ribosome recycling factor HER15_11700 PF00696 Amino acid kinase family HER15_11705 PF00889 Elongation factor TS HER15_11710 PF00318 Ribosomal protein S2 HER15_11715 PF00380 Ribosomal protein S9/S16 HER15_11720 PF00572 Ribosomal protein L13 HER15_11725 PF00593 TonB dependent receptor HER15_11725 PF07715 TonB-dependent Receptor Plug Domain HER15_11735 PF02424 ApbE family HER15_11740 PF01209 ubiE/COQ5 methyltransferase family HER15_11745 PF00557 Metallopeptidase family M24 HER15_11755 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HER15_11755 PF01676 Metalloenzyme superfamily HER15_11770 PF01435 Peptidase family M48 HER15_11790 PF02607 B12 binding domain HER15_11790 PF13411 MerR HTH family regulatory protein HER15_11795 PF02469 Fasciclin domain HER15_11800 PF01593 Flavin containing amine oxidoreductase HER15_11835 PF03109 ABC1 family HER15_11845 PF13460 NAD(P)H-binding HER15_11845 PF11066 Protein of unknown function (DUF2867) HER15_11855 PF00875 DNA photolyase HER15_11855 PF03441 FAD binding domain of DNA photolyase HER15_11860 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HER15_11865 PF00875 DNA photolyase HER15_11865 PF03441 FAD binding domain of DNA photolyase HER15_11885 PF01227 GTP cyclohydrolase I HER15_11905 PF00255 Glutathione peroxidase HER15_11920 PF03441 FAD binding domain of DNA photolyase HER15_11920 PF00875 DNA photolyase HER15_11925 PF02272 DHHA1 domain HER15_11925 PF01411 tRNA synthetases class II (A) HER15_11925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HER15_11930 PF01551 Peptidase family M23 HER15_11955 PF09423 PhoD-like phosphatase HER15_11955 PF16655 PhoD-like phosphatase, N-terminal domain HER15_11995 PF06580 Histidine kinase HER15_11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_12000 PF04397 LytTr DNA-binding domain HER15_12000 PF00072 Response regulator receiver domain HER15_12025 PF04241 Protein of unknown function (DUF423) HER15_12040 PF02625 XdhC and CoxI family HER15_12040 PF13478 XdhC Rossmann domain HER15_12065 PF00593 TonB dependent receptor HER15_12065 PF07660 Secretin and TonB N terminus short domain HER15_12065 PF07715 TonB-dependent Receptor Plug Domain HER15_12085 PF01926 50S ribosome-binding GTPase HER15_12085 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HER15_12095 PF01926 50S ribosome-binding GTPase HER15_12095 PF07650 KH domain HER15_12125 PF03979 Sigma-70 factor, region 1.1 HER15_12125 PF00140 Sigma-70 factor, region 1.2 HER15_12125 PF04542 Sigma-70 region 2 HER15_12125 PF04545 Sigma-70, region 4 HER15_12125 PF04539 Sigma-70 region 3 HER15_12130 PF01165 Ribosomal protein S21 HER15_12135 PF00474 Sodium:solute symporter family HER15_12140 PF07687 Peptidase dimerisation domain HER15_12140 PF01546 Peptidase family M20/M25/M40 HER15_12145 PF00842 Alanine racemase, C-terminal domain HER15_12145 PF01168 Alanine racemase, N-terminal domain HER15_12150 PF01168 Alanine racemase, N-terminal domain HER15_12160 PF02423 Ornithine cyclodeaminase/mu-crystallin family HER15_12165 PF05544 Proline racemase HER15_12170 PF01321 Creatinase/Prolidase N-terminal domain HER15_12170 PF00557 Metallopeptidase family M24 HER15_12175 PF01266 FAD dependent oxidoreductase HER15_12180 PF05544 Proline racemase HER15_12185 PF00171 Aldehyde dehydrogenase family HER15_12190 PF00701 Dihydrodipicolinate synthetase family HER15_12195 PF12833 Helix-turn-helix domain HER15_12195 PF02311 AraC-like ligand binding domain HER15_12205 PF01177 Asp/Glu/Hydantoin racemase HER15_12220 PF07244 Surface antigen variable number repeat HER15_12220 PF01103 Surface antigen HER15_12225 PF01255 Putative undecaprenyl diphosphate synthase HER15_12235 PF01513 ATP-NAD kinase HER15_12245 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HER15_12250 PF00561 alpha/beta hydrolase fold HER15_12275 PF02525 Flavodoxin-like fold HER15_12285 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV HER15_12290 PF05698 Bacterial trigger factor protein (TF) C-terminus HER15_12290 PF05697 Bacterial trigger factor protein (TF) HER15_12295 PF00574 Clp protease HER15_12300 PF07724 AAA domain (Cdc48 subfamily) HER15_12300 PF10431 C-terminal, D2-small domain, of ClpB protein HER15_12300 PF06689 ClpX C4-type zinc finger HER15_12310 PF08275 DNA primase catalytic core, N-terminal domain HER15_12310 PF10410 DnaB-helicase binding domain of primase HER15_12310 PF01807 CHC2 zinc finger HER15_12315 PF02540 NAD synthase HER15_12330 PF01712 Deoxynucleoside kinase HER15_12335 PF01138 3' exoribonuclease family, domain 1 HER15_12335 PF00013 KH domain HER15_12335 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HER15_12335 PF03725 3' exoribonuclease family, domain 2 HER15_12335 PF00575 S1 RNA binding domain HER15_12340 PF00312 Ribosomal protein S15 HER15_12345 PF01039 Carboxyl transferase domain HER15_12350 PF01116 Fructose-bisphosphate aldolase class-II HER15_12360 PF00588 SpoU rRNA Methylase family HER15_12360 PF08032 RNA 2'-O ribose methyltransferase substrate binding HER15_12365 PF04055 Radical SAM superfamily HER15_12375 PF01712 Deoxynucleoside kinase HER15_12385 PF03099 Biotin/lipoate A/B protein ligase family HER15_12395 PF02580 D-Tyr-tRNA(Tyr) deacylase HER15_12400 PF03193 RsgA GTPase HER15_12400 PF16745 RsgA N-terminal domain HER15_12405 PF00793 DAHP synthetase I family HER15_12405 PF18152 DAHP synthase ferredoxin-like domain HER15_12415 PF00155 Aminotransferase class I and II HER15_12440 PF00085 Thioredoxin HER15_12445 PF02772 S-adenosylmethionine synthetase, central domain HER15_12445 PF00438 S-adenosylmethionine synthetase, N-terminal domain HER15_12445 PF02773 S-adenosylmethionine synthetase, C-terminal domain HER15_12455 PF01343 Peptidase family S49 HER15_12465 PF00117 Glutamine amidotransferase class-I HER15_12465 PF00958 GMP synthase C terminal domain HER15_12465 PF03352 Methyladenine glycosylase HER15_12465 PF13673 Acetyltransferase (GNAT) domain HER15_12465 PF13302 Acetyltransferase (GNAT) domain HER15_12480 PF00106 short chain dehydrogenase HER15_12495 PF01063 Amino-transferase class IV HER15_12510 PF01266 FAD dependent oxidoreductase HER15_12510 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HER15_12515 PF05175 Methyltransferase small domain HER15_12520 PF03061 Thioesterase superfamily HER15_12525 PF08267 Cobalamin-independent synthase, N-terminal domain HER15_12525 PF01717 Cobalamin-independent synthase, Catalytic domain HER15_12535 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_12550 PF04241 Protein of unknown function (DUF423) HER15_12555 PF01293 Phosphoenolpyruvate carboxykinase HER15_12560 PF13382 Adenine deaminase C-terminal domain HER15_12560 PF01979 Amidohydrolase family HER15_12565 PF02075 Crossover junction endodeoxyribonuclease RuvC HER15_12570 PF06969 HemN C-terminal domain HER15_12570 PF04055 Radical SAM superfamily HER15_12600 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HER15_12605 PF02547 Queuosine biosynthesis protein HER15_12610 PF04055 Radical SAM superfamily HER15_12615 PF00348 Polyprenyl synthetase HER15_12630 PF00118 TCP-1/cpn60 chaperonin family HER15_12635 PF00166 Chaperonin 10 Kd subunit HER15_12655 PF02954 Bacterial regulatory protein, Fis family HER15_12655 PF00158 Sigma-54 interaction domain HER15_12655 PF01590 GAF domain HER15_12660 PF04055 Radical SAM superfamily HER15_12660 PF01938 TRAM domain HER15_12660 PF00919 Uncharacterized protein family UPF0004 HER15_12665 PF01131 DNA topoisomerase HER15_12665 PF01751 Toprim domain HER15_12665 PF13368 Topoisomerase C-terminal repeat HER15_12675 PF03781 Sulfatase-modifying factor enzyme 1 HER15_12705 PF12848 ABC transporter HER15_12705 PF00005 ABC transporter HER15_12705 PF16326 ABC transporter C-terminal domain HER15_12735 PF08239 Bacterial SH3 domain HER15_12735 PF00877 NlpC/P60 family HER15_12735 PF01476 LysM domain HER15_12750 PF06580 Histidine kinase HER15_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_12750 PF07694 5TMR of 5TMR-LYT HER15_12755 PF00072 Response regulator receiver domain HER15_12755 PF04397 LytTr DNA-binding domain HER15_12760 PF00132 Bacterial transferase hexapeptide (six repeats) HER15_12780 PF13195 Protein of unknown function (DUF4011) HER15_12780 PF13087 AAA domain HER15_12780 PF13086 AAA domain HER15_12780 PF13086 AAA domain HER15_12780 PF13195 Protein of unknown function (DUF4011) HER15_12780 PF13087 AAA domain HER15_12790 PF00004 ATPase family associated with various cellular activities (AAA) HER15_12790 PF07724 AAA domain (Cdc48 subfamily) HER15_12790 PF17871 AAA lid domain HER15_12790 PF02861 Clp amino terminal domain, pathogenicity island component HER15_12790 PF10431 C-terminal, D2-small domain, of ClpB protein HER15_12805 PF03309 Type III pantothenate kinase HER15_12830 PF03471 Transporter associated domain HER15_12830 PF01595 Cyclin M transmembrane N-terminal domain HER15_12830 PF00571 CBS domain HER15_12835 PF13145 PPIC-type PPIASE domain HER15_12845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HER15_12845 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_12880 PF01432 Peptidase family M3 HER15_12885 PF00731 AIR carboxylase HER15_12890 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HER15_12890 PF02222 ATP-grasp domain HER15_12900 PF01272 Transcription elongation factor, GreA/GreB, C-term HER15_12900 PF03449 Transcription elongation factor, N-terminal HER15_12905 PF01230 HIT domain HER15_12915 PF00512 His Kinase A (phospho-acceptor) domain HER15_12915 PF00989 PAS fold HER15_12915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_12945 PF02667 Short chain fatty acid transporter HER15_12950 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HER15_12975 PF00893 Small Multidrug Resistance protein HER15_12995 PF08497 Radical SAM N-terminal HER15_12995 PF11842 Domain of unknown function (DUF3362) HER15_12995 PF04055 Radical SAM superfamily HER15_13005 PF18127 Domain of unknown function (DUF5598) HER15_13005 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HER15_13025 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family HER15_13035 PF01661 Macro domain HER15_13045 PF14572 Phosphoribosyl synthetase-associated domain HER15_13045 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HER15_13050 PF00293 NUDIX domain HER15_13050 PF09297 NADH pyrophosphatase zinc ribbon domain HER15_13055 PF04542 Sigma-70 region 2 HER15_13055 PF08281 Sigma-70, region 4 HER15_13065 PF07969 Amidohydrolase family HER15_13095 PF00005 ABC transporter HER15_13100 PF00056 lactate/malate dehydrogenase, NAD binding domain HER15_13100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HER15_13115 PF00204 DNA gyrase B HER15_13115 PF00986 DNA gyrase B subunit, carboxyl terminus HER15_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_13115 PF01751 Toprim domain HER15_13125 PF00733 Asparagine synthase HER15_13125 PF13537 Glutamine amidotransferase domain HER15_13135 PF04715 Anthranilate synthase component I, N terminal region HER15_13135 PF00425 chorismate binding enzyme HER15_13140 PF00117 Glutamine amidotransferase class-I HER15_13140 PF02885 Glycosyl transferase family, helical bundle domain HER15_13140 PF00591 Glycosyl transferase family, a/b domain HER15_13145 PF00591 Glycosyl transferase family, a/b domain HER15_13145 PF02885 Glycosyl transferase family, helical bundle domain HER15_13150 PF00218 Indole-3-glycerol phosphate synthase HER15_13155 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HER15_13160 PF00291 Pyridoxal-phosphate dependent enzyme HER15_13165 PF00290 Tryptophan synthase alpha chain HER15_13170 PF07676 WD40-like Beta Propeller Repeat HER15_13170 PF03572 Peptidase family S41 HER15_13170 PF14684 Tricorn protease C1 domain HER15_13170 PF14685 Tricorn protease PDZ domain HER15_13180 PF00270 DEAD/DEAH box helicase HER15_13180 PF00271 Helicase conserved C-terminal domain HER15_13180 PF00570 HRDC domain HER15_13180 PF16124 RecQ zinc-binding HER15_13180 PF09382 RQC domain HER15_13240 PF01642 Methylmalonyl-CoA mutase HER15_13240 PF02310 B12 binding domain HER15_13250 PF01175 Urocanase Rossmann-like domain HER15_13250 PF17391 Urocanase N-terminal domain HER15_13250 PF17392 Urocanase C-terminal domain HER15_13275 PF01497 Periplasmic binding protein HER15_13280 PF04397 LytTr DNA-binding domain HER15_13280 PF00072 Response regulator receiver domain HER15_13285 PF07715 TonB-dependent Receptor Plug Domain HER15_13285 PF00593 TonB dependent receptor HER15_13295 PF07715 TonB-dependent Receptor Plug Domain HER15_13295 PF00593 TonB dependent receptor HER15_13305 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HER15_13310 PF00528 Binding-protein-dependent transport system inner membrane component HER15_13320 PF00121 Triosephosphate isomerase HER15_13330 PF02617 ATP-dependent Clp protease adaptor protein ClpS HER15_13370 PF00491 Arginase family HER15_13375 PF17810 Arginine decarboxylase helical bundle domain HER15_13375 PF17944 Arginine decarboxylase C-terminal helical extension HER15_13375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HER15_13395 PF01544 CorA-like Mg2+ transporter protein HER15_13405 PF00873 AcrB/AcrD/AcrF family HER15_13425 PF08818 Domain of unknown function (DU1801) HER15_13430 PF02627 Carboxymuconolactone decarboxylase family HER15_13450 PF07715 TonB-dependent Receptor Plug Domain HER15_13450 PF00593 TonB dependent receptor HER15_13460 PF01699 Sodium/calcium exchanger protein HER15_13465 PF00120 Glutamine synthetase, catalytic domain HER15_13465 PF03951 Glutamine synthetase, beta-Grasp domain HER15_13470 PF12437 Glutamine synthetase type III N terminal HER15_13470 PF00120 Glutamine synthetase, catalytic domain HER15_13470 PF18318 Glutamine synthetase C-terminal domain HER15_13495 PF03783 Curli production assembly/transport component CsgG HER15_13505 PF00586 AIR synthase related protein, N-terminal domain HER15_13505 PF02769 AIR synthase related protein, C-terminal domain HER15_13515 PF00472 RF-1 domain HER15_13515 PF03462 PCRF domain HER15_13520 PF01165 Ribosomal protein S21 HER15_13525 PF13533 Biotin-lipoyl like HER15_13530 PF00873 AcrB/AcrD/AcrF family HER15_13545 PF00106 short chain dehydrogenase HER15_13550 PF02254 TrkA-N domain HER15_13550 PF00999 Sodium/hydrogen exchanger family HER15_13555 PF02525 Flavodoxin-like fold HER15_13565 PF00881 Nitroreductase family HER15_13570 PF01638 HxlR-like helix-turn-helix HER15_13575 PF02525 Flavodoxin-like fold HER15_13580 PF00578 AhpC/TSA family HER15_13600 PF10459 Peptidase S46 HER15_13615 PF12843 Putative quorum-sensing-regulated virulence factor HER15_13625 PF06123 Inner membrane protein CreD HER15_13655 PF00793 DAHP synthetase I family HER15_13660 PF04151 Bacterial pre-peptidase C-terminal domain HER15_13660 PF04389 Peptidase family M28 HER15_13665 PF00082 Subtilase family HER15_13675 PF02333 Phytase HER15_13690 PF01835 MG2 domain HER15_13690 PF07703 Alpha-2-macroglobulin bait region domain HER15_13690 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HER15_13690 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HER15_13690 PF17962 Bacterial macroglobulin domain 6 HER15_13690 PF00207 Alpha-2-macroglobulin family HER15_13690 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HER15_13695 PF08245 Mur ligase middle domain HER15_13695 PF02875 Mur ligase family, glutamate ligase domain HER15_13695 PF01225 Mur ligase family, catalytic domain HER15_13725 PF02386 Cation transport protein HER15_13730 PF02080 TrkA-C domain HER15_13730 PF02254 TrkA-N domain HER15_13735 PF04002 RadC-like JAB domain HER15_13765 PF03601 Conserved hypothetical protein 698 HER15_13770 PF03466 LysR substrate binding domain HER15_13770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HER15_13775 PF12002 MgsA AAA+ ATPase C terminal HER15_13775 PF00004 ATPase family associated with various cellular activities (AAA) HER15_13775 PF16193 AAA C-terminal domain HER15_13780 PF01694 Rhomboid family HER15_13785 PF00588 SpoU rRNA Methylase family HER15_13785 PF08032 RNA 2'-O ribose methyltransferase substrate binding HER15_13795 PF00593 TonB dependent receptor HER15_13795 PF07715 TonB-dependent Receptor Plug Domain HER15_13805 PF00593 TonB dependent receptor HER15_13805 PF07715 TonB-dependent Receptor Plug Domain HER15_13810 PF00164 Ribosomal protein S12/S23 HER15_13815 PF00177 Ribosomal protein S7p/S5e HER15_13820 PF00679 Elongation factor G C-terminus HER15_13820 PF03764 Elongation factor G, domain IV HER15_13820 PF00009 Elongation factor Tu GTP binding domain HER15_13820 PF03144 Elongation factor Tu domain 2 HER15_13820 PF14492 Elongation Factor G, domain II HER15_13825 PF00338 Ribosomal protein S10p/S20e HER15_13830 PF00297 Ribosomal protein L3 HER15_13835 PF00573 Ribosomal protein L4/L1 family HER15_13840 PF00276 Ribosomal protein L23 HER15_13845 PF00181 Ribosomal Proteins L2, RNA binding domain HER15_13845 PF03947 Ribosomal Proteins L2, C-terminal domain HER15_13850 PF00203 Ribosomal protein S19 HER15_13855 PF00237 Ribosomal protein L22p/L17e HER15_13860 PF00189 Ribosomal protein S3, C-terminal domain HER15_13860 PF07650 KH domain HER15_13865 PF00252 Ribosomal protein L16p/L10e HER15_13870 PF00831 Ribosomal L29 protein HER15_13875 PF00366 Ribosomal protein S17 HER15_13880 PF00238 Ribosomal protein L14p/L23e HER15_13885 PF00467 KOW motif HER15_13885 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HER15_13890 PF00281 Ribosomal protein L5 HER15_13890 PF00673 ribosomal L5P family C-terminus HER15_13895 PF00253 Ribosomal protein S14p/S29e HER15_13900 PF00410 Ribosomal protein S8 HER15_13905 PF00347 Ribosomal protein L6 HER15_13910 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HER15_13915 PF00333 Ribosomal protein S5, N-terminal domain HER15_13915 PF03719 Ribosomal protein S5, C-terminal domain HER15_13920 PF00327 Ribosomal protein L30p/L7e HER15_13925 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HER15_13930 PF00344 SecY translocase HER15_13935 PF01176 Translation initiation factor 1A / IF-1 HER15_13940 PF00444 Ribosomal protein L36 HER15_13945 PF00416 Ribosomal protein S13/S18 HER15_13950 PF00411 Ribosomal protein S11 HER15_13955 PF01479 S4 domain HER15_13955 PF00163 Ribosomal protein S4/S9 N-terminal domain HER15_13960 PF01000 RNA polymerase Rpb3/RpoA insert domain HER15_13960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HER15_13960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HER15_13965 PF01196 Ribosomal protein L17 HER15_13970 PF00117 Glutamine amidotransferase class-I HER15_13970 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HER15_13975 PF00113 Enolase, C-terminal TIM barrel domain HER15_13975 PF03952 Enolase, N-terminal domain HER15_13995 PF00285 Citrate synthase, C-terminal domain HER15_14000 PF00491 Arginase family HER15_14005 PF02597 ThiS family HER15_14010 PF13667 ThiC-associated domain HER15_14010 PF01964 Radical SAM ThiC family HER15_14015 PF02581 Thiamine monophosphate synthase HER15_14020 PF08543 Phosphomethylpyrimidine kinase HER15_14025 PF02581 Thiamine monophosphate synthase HER15_14030 PF05690 Thiazole biosynthesis protein ThiG HER15_14035 PF06968 Biotin and Thiamin Synthesis associated domain HER15_14035 PF04055 Radical SAM superfamily HER15_14045 PF00899 ThiF family HER15_14045 PF00581 Rhodanese-like domain HER15_14065 PF01752 Collagenase HER15_14065 PF18496 Collagenase G catalytic helper subdomain HER15_14065 PF08453 Peptidase family M9 N-terminal HER15_14090 PF01588 Putative tRNA binding domain HER15_14100 PF04542 Sigma-70 region 2 HER15_14100 PF08281 Sigma-70, region 4 HER15_14115 PF01406 tRNA synthetases class I (C) catalytic domain HER15_14115 PF09190 DALR domain HER15_14120 PF01809 Putative membrane protein insertion efficiency factor HER15_14125 PF01790 Prolipoprotein diacylglyceryl transferase HER15_14135 PF02590 Predicted SPOUT methyltransferase HER15_14160 PF00403 Heavy-metal-associated domain HER15_14165 PF17853 GGDEF-like domain HER15_14165 PF12833 Helix-turn-helix domain HER15_14170 PF02861 Clp amino terminal domain, pathogenicity island component HER15_14170 PF17871 AAA lid domain HER15_14170 PF10431 C-terminal, D2-small domain, of ClpB protein HER15_14170 PF00004 ATPase family associated with various cellular activities (AAA) HER15_14170 PF07724 AAA domain (Cdc48 subfamily) HER15_14175 PF03989 DNA gyrase C-terminal domain, beta-propeller HER15_14175 PF00521 DNA gyrase/topoisomerase IV, subunit A HER15_14185 PF00877 NlpC/P60 family HER15_14190 PF00108 Thiolase, N-terminal domain HER15_14190 PF02803 Thiolase, C-terminal domain HER15_14195 PF01966 HD domain HER15_14195 PF07697 7TM-HD extracellular HER15_14195 PF07698 7TM receptor with intracellular HD hydrolase HER15_14220 PF00589 Phage integrase family HER15_14220 PF02899 Phage integrase, N-terminal SAM-like domain HER15_14310 PF00892 EamA-like transporter family HER15_14315 PF12833 Helix-turn-helix domain HER15_14315 PF02311 AraC-like ligand binding domain HER15_14320 PF09234 Domain of unknown function (DUF1963) HER15_14330 PF12848 ABC transporter HER15_14330 PF16326 ABC transporter C-terminal domain HER15_14330 PF00005 ABC transporter HER15_14335 PF07516 SecA Wing and Scaffold domain HER15_14335 PF01043 SecA preprotein cross-linking domain HER15_14335 PF07517 SecA DEAD-like domain HER15_14335 PF02810 SEC-C motif HER15_14350 PF02347 Glycine cleavage system P-protein HER15_14360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HER15_14360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HER15_14375 PF01614 Bacterial transcriptional regulator HER15_14375 PF09339 IclR helix-turn-helix domain HER15_14380 PF00266 Aminotransferase class-V HER15_14390 PF01494 FAD binding domain HER15_14395 PF01381 Helix-turn-helix HER15_14405 PF04012 PspA/IM30 family HER15_14420 PF17864 RuvB AAA lid domain HER15_14420 PF05496 Holliday junction DNA helicase RuvB P-loop domain HER15_14420 PF05491 RuvB C-terminal winged helix domain HER15_14430 PF01042 Endoribonuclease L-PSP HER15_14435 PF00171 Aldehyde dehydrogenase family HER15_14445 PF00106 short chain dehydrogenase HER15_14450 PF06052 3-hydroxyanthranilic acid dioxygenase HER15_14475 PF00664 ABC transporter transmembrane region HER15_14475 PF00005 ABC transporter HER15_14475 PF03412 Peptidase C39 family HER15_14485 PF00854 POT family HER15_14510 PF00004 ATPase family associated with various cellular activities (AAA) HER15_14510 PF17862 AAA+ lid domain HER15_14510 PF01434 Peptidase family M41 HER15_14530 PF00156 Phosphoribosyl transferase domain HER15_14535 PF00293 NUDIX domain HER15_14540 PF00012 Hsp70 protein HER15_14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_14555 PF06580 Histidine kinase HER15_14560 PF00072 Response regulator receiver domain HER15_14560 PF04397 LytTr DNA-binding domain HER15_14565 PF01894 Uncharacterised protein family UPF0047 HER15_14580 PF07992 Pyridine nucleotide-disulphide oxidoreductase HER15_14590 PF12833 Helix-turn-helix domain HER15_14605 PF03116 NQR2, RnfD, RnfE family HER15_14610 PF13375 RnfC Barrel sandwich hybrid domain HER15_14610 PF12838 4Fe-4S dicluster domain HER15_14610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HER15_14610 PF10531 SLBB domain HER15_14635 PF02525 Flavodoxin-like fold HER15_14650 PF12146 Serine aminopeptidase, S33 HER15_14685 PF07690 Major Facilitator Superfamily HER15_14690 PF00248 Aldo/keto reductase family HER15_14695 PF00296 Luciferase-like monooxygenase HER15_14700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HER15_14700 PF00925 GTP cyclohydrolase II HER15_14715 PF09397 Ftsk gamma domain HER15_14715 PF17854 FtsK alpha domain HER15_14715 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HER15_14715 PF01580 FtsK/SpoIIIE family HER15_14725 PF08534 Redoxin HER15_14730 PF01554 MatE HER15_14760 PF00583 Acetyltransferase (GNAT) family HER15_14780 PF13183 4Fe-4S dicluster domain HER15_14780 PF01565 FAD binding domain HER15_14780 PF02913 FAD linked oxidases, C-terminal domain HER15_14790 PF07063 Domain of unknown function (DUF1338) HER15_14800 PF00271 Helicase conserved C-terminal domain HER15_14800 PF12344 Ultra-violet resistance protein B HER15_14800 PF17757 UvrB interaction domain HER15_14800 PF04851 Type III restriction enzyme, res subunit HER15_14805 PF08453 Peptidase family M9 N-terminal HER15_14805 PF18496 Collagenase G catalytic helper subdomain HER15_14805 PF01752 Collagenase HER15_14825 PF00005 ABC transporter HER15_14835 PF00072 Response regulator receiver domain HER15_14835 PF00486 Transcriptional regulatory protein, C terminal HER15_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_14840 PF00512 His Kinase A (phospho-acceptor) domain HER15_14845 PF01121 Dephospho-CoA kinase HER15_14855 PF02699 Preprotein translocase subunit HER15_14865 PF01029 NusB family HER15_14870 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HER15_14870 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HER15_14875 PF00005 ABC transporter HER15_14875 PF00664 ABC transporter transmembrane region HER15_14885 PF00425 chorismate binding enzyme HER15_14895 PF03061 Thioesterase superfamily HER15_14905 PF01300 Telomere recombination HER15_14935 PF13520 Amino acid permease HER15_14940 PF00115 Cytochrome C and Quinol oxidase polypeptide I HER15_14945 PF01814 Hemerythrin HHE cation binding domain HER15_14945 PF04405 Domain of Unknown function (DUF542) HER15_14950 PF02082 Transcriptional regulator HER15_14970 PF01554 MatE HER15_14975 PF02585 GlcNAc-PI de-N-acetylase HER15_15035 PF00072 Response regulator receiver domain HER15_15035 PF01339 CheB methylesterase HER15_15040 PF00360 Phytochrome region HER15_15040 PF08446 PAS fold HER15_15040 PF00512 His Kinase A (phospho-acceptor) domain HER15_15040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_15040 PF01590 GAF domain HER15_15050 PF12833 Helix-turn-helix domain HER15_15050 PF02311 AraC-like ligand binding domain HER15_15075 PF01063 Amino-transferase class IV HER15_15080 PF02622 Uncharacterized ACR, COG1678 HER15_15085 PF04397 LytTr DNA-binding domain HER15_15085 PF00072 Response regulator receiver domain HER15_15090 PF13492 GAF domain HER15_15090 PF06580 Histidine kinase HER15_15090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HER15_15090 PF07694 5TMR of 5TMR-LYT HER15_15105 PF00970 Oxidoreductase FAD-binding domain HER15_15105 PF00111 2Fe-2S iron-sulfur cluster binding domain HER15_15105 PF00175 Oxidoreductase NAD-binding domain HER15_15120 PF07715 TonB-dependent Receptor Plug Domain HER15_15120 PF07660 Secretin and TonB N terminus short domain HER15_15120 PF00593 TonB dependent receptor HER15_15140 PF00005 ABC transporter HER15_15140 PF17755 UvrA DNA-binding domain HER15_15140 PF17760 UvrA interaction domain HER15_15145 PF01565 FAD binding domain HER15_15145 PF08031 Berberine and berberine like HER15_15155 PF04542 Sigma-70 region 2 HER15_15155 PF08281 Sigma-70, region 4 HER15_15160 PF10576 Iron-sulfur binding domain of endonuclease III HER15_15160 PF00633 Helix-hairpin-helix motif HER15_15160 PF00730 HhH-GPD superfamily base excision DNA repair protein HER15_15165 PF00578 AhpC/TSA family HER15_15170 PF04116 Fatty acid hydroxylase superfamily HER15_15185 PF01979 Amidohydrolase family HER15_15200 PF10079 Bacillithiol biosynthesis BshC HER15_15205 PF05971 RNA methyltransferase HER15_15225 PF00488 MutS domain V HER15_15225 PF01713 Smr domain HER15_15230 PF03167 Uracil DNA glycosylase superfamily HER15_15245 PF01043 SecA preprotein cross-linking domain HER15_15245 PF07517 SecA DEAD-like domain HER15_15245 PF07516 SecA Wing and Scaffold domain HER15_15255 PF01923 Cobalamin adenosyltransferase HER15_15260 PF03061 Thioesterase superfamily