locus-tag class description KHQ88_00010 PF01116 Fructose-bisphosphate aldolase class-II KHQ88_00015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ88_00015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ88_00020 PF02447 GntP family permease KHQ88_00025 PF00455 DeoR C terminal sensor domain KHQ88_00025 PF08220 DeoR-like helix-turn-helix domain KHQ88_00030 PF17042 Nucleotide-binding C-terminal domain KHQ88_00030 PF07005 Sugar-binding N-terminal domain KHQ88_00035 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KHQ88_00040 PF00575 S1 RNA binding domain KHQ88_00045 PF00342 Phosphoglucose isomerase KHQ88_00055 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KHQ88_00060 PF00814 Glycoprotease family KHQ88_00070 PF00814 Glycoprotease family KHQ88_00075 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ88_00075 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KHQ88_00080 PF00580 UvrD/REP helicase N-terminal domain KHQ88_00080 PF13361 UvrD-like helicase C-terminal domain KHQ88_00085 PF12826 Helix-hairpin-helix motif KHQ88_00085 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KHQ88_00085 PF00533 BRCA1 C Terminus (BRCT) domain KHQ88_00085 PF01653 NAD-dependent DNA ligase adenylation domain KHQ88_00085 PF03120 NAD-dependent DNA ligase OB-fold domain KHQ88_00090 PF00005 ABC transporter KHQ88_00090 PF17755 UvrA DNA-binding domain KHQ88_00090 PF17760 UvrA interaction domain KHQ88_00100 PF07475 HPr Serine kinase C-terminal domain KHQ88_00100 PF02603 HPr Serine kinase N terminus KHQ88_00105 PF01790 Prolipoprotein diacylglyceryl transferase KHQ88_00110 PF10298 WhiA N-terminal LAGLIDADG-like domain KHQ88_00110 PF02650 WhiA C-terminal HTH domain KHQ88_00110 PF14527 WhiA LAGLIDADG-like domain KHQ88_00115 PF01648 4'-phosphopantetheinyl transferase superfamily KHQ88_00125 PF16921 Tex protein YqgF-like domain KHQ88_00125 PF17674 HHH domain KHQ88_00125 PF00575 S1 RNA binding domain KHQ88_00125 PF09371 Tex-like protein N-terminal domain KHQ88_00170 PF03773 Predicted permease KHQ88_00185 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ88_00185 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ88_00190 PF00204 DNA gyrase B KHQ88_00190 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ88_00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ88_00190 PF01751 Toprim domain KHQ88_00195 PF02463 RecF/RecN/SMC N terminal domain KHQ88_00205 PF17757 UvrB interaction domain KHQ88_00205 PF00271 Helicase conserved C-terminal domain KHQ88_00205 PF03461 TRCF domain KHQ88_00205 PF02559 CarD-like/TRCF domain KHQ88_00205 PF00270 DEAD/DEAH box helicase KHQ88_00210 PF00106 short chain dehydrogenase KHQ88_00220 PF01144 Coenzyme A transferase KHQ88_00225 PF01144 Coenzyme A transferase KHQ88_00230 PF03061 Thioesterase superfamily KHQ88_00235 PF05853 beta-keto acid cleavage enzyme KHQ88_00245 PF12544 Lysine-2,3-aminomutase KHQ88_00245 PF04055 Radical SAM superfamily KHQ88_00255 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit KHQ88_00260 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase KHQ88_00260 PF02310 B12 binding domain KHQ88_00265 PF01923 Cobalamin adenosyltransferase KHQ88_00270 PF02310 B12 binding domain KHQ88_00275 PF13941 MutL protein KHQ88_00280 PF06368 Methylaspartate mutase E chain (MutE) KHQ88_00285 PF07476 Methylaspartate ammonia-lyase C-terminus KHQ88_00285 PF05034 Methylaspartate ammonia-lyase N-terminus KHQ88_00290 PF06857 Malonate decarboxylase delta subunit (MdcD) KHQ88_00295 PF03328 HpcH/HpaI aldolase/citrate lyase family KHQ88_00300 PF04223 Citrate lyase, alpha subunit (CitF) KHQ88_00305 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KHQ88_00305 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase KHQ88_00320 PF01554 MatE KHQ88_00350 PF01496 V-type ATPase 116kDa subunit family KHQ88_00370 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ88_00370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ88_00370 PF16886 ATPsynthase alpha/beta subunit N-term extension KHQ88_00375 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ88_00375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ88_00380 PF01813 ATP synthase subunit D KHQ88_00390 PF13673 Acetyltransferase (GNAT) domain KHQ88_00415 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ88_00425 PF00679 Elongation factor G C-terminus KHQ88_00425 PF14492 Elongation Factor G, domain II KHQ88_00425 PF03764 Elongation factor G, domain IV KHQ88_00425 PF00009 Elongation factor Tu GTP binding domain KHQ88_00425 PF03144 Elongation factor Tu domain 2 KHQ88_00430 PF02645 Uncharacterised protein, DegV family COG1307 KHQ88_00460 PF01809 Putative membrane protein insertion efficiency factor KHQ88_00465 PF04231 Endonuclease I KHQ88_00470 PF02608 ABC transporter substrate-binding protein PnrA-like KHQ88_00475 PF00005 ABC transporter KHQ88_00480 PF02653 Branched-chain amino acid transport system / permease component KHQ88_00485 PF02653 Branched-chain amino acid transport system / permease component KHQ88_00490 PF02384 N-6 DNA Methylase KHQ88_00495 PF00883 Cytosol aminopeptidase family, catalytic domain KHQ88_00495 PF02789 Cytosol aminopeptidase family, N-terminal domain KHQ88_00500 PF00871 Acetokinase family KHQ88_00515 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ88_00515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ88_00515 PF14579 Helix-hairpin-helix motif KHQ88_00515 PF02811 PHP domain KHQ88_00515 PF01336 OB-fold nucleic acid binding domain KHQ88_00520 PF00365 Phosphofructokinase KHQ88_00525 PF06969 HemN C-terminal domain KHQ88_00525 PF04055 Radical SAM superfamily KHQ88_00530 PF02151 UvrB/uvrC motif KHQ88_00530 PF12344 Ultra-violet resistance protein B KHQ88_00530 PF17757 UvrB interaction domain KHQ88_00530 PF00271 Helicase conserved C-terminal domain KHQ88_00530 PF04851 Type III restriction enzyme, res subunit KHQ88_00550 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ88_00550 PF01938 TRAM domain KHQ88_00560 PF00999 Sodium/hydrogen exchanger family KHQ88_00580 PF13684 Dihydroxyacetone kinase family KHQ88_00580 PF02734 DAK2 domain KHQ88_00600 PF01212 Beta-eliminating lyase KHQ88_00650 PF01880 Desulfoferrodoxin KHQ88_00650 PF06397 Desulfoferrodoxin, N-terminal domain KHQ88_00655 PF02673 Bacitracin resistance protein BacA KHQ88_00660 PF02673 Bacitracin resistance protein BacA KHQ88_00670 PF13614 AAA domain KHQ88_00680 PF00072 Response regulator receiver domain KHQ88_00680 PF00486 Transcriptional regulatory protein, C terminal KHQ88_00685 PF00672 HAMP domain KHQ88_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ88_00685 PF00512 His Kinase A (phospho-acceptor) domain KHQ88_00690 PF02719 Polysaccharide biosynthesis protein KHQ88_00695 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ88_00695 PF01938 TRAM domain KHQ88_00700 PF01268 Formate--tetrahydrofolate ligase KHQ88_00715 PF01554 MatE KHQ88_00720 PF12146 Serine aminopeptidase, S33 KHQ88_00730 PF07670 Nucleoside recognition KHQ88_00730 PF07664 Ferrous iron transport protein B C terminus KHQ88_00730 PF17910 FeoB cytosolic helical domain KHQ88_00730 PF02421 Ferrous iron transport protein B KHQ88_00740 PF00128 Alpha amylase, catalytic domain KHQ88_00745 PF01134 Glucose inhibited division protein A KHQ88_00750 PF00589 Phage integrase family KHQ88_00750 PF02899 Phage integrase, N-terminal SAM-like domain KHQ88_00755 PF02590 Predicted SPOUT methyltransferase KHQ88_00805 PF01934 Protein of unknown function DUF86 KHQ88_00810 PF00248 Aldo/keto reductase family KHQ88_00840 PF01431 Peptidase family M13 KHQ88_00840 PF05649 Peptidase family M13 KHQ88_00845 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ88_00855 PF00106 short chain dehydrogenase KHQ88_00865 PF04011 LemA family KHQ88_00880 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ88_00885 PF00005 ABC transporter KHQ88_00900 PF01381 Helix-turn-helix KHQ88_00905 PF03481 Putative GTP-binding controlling metal-binding KHQ88_00905 PF01300 Telomere recombination KHQ88_00910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ88_00920 PF12848 ABC transporter KHQ88_00920 PF00005 ABC transporter KHQ88_00930 PF00970 Oxidoreductase FAD-binding domain KHQ88_00930 PF00175 Oxidoreductase NAD-binding domain KHQ88_00930 PF00111 2Fe-2S iron-sulfur cluster binding domain KHQ88_00935 PF02508 Rnf-Nqr subunit, membrane protein KHQ88_00940 PF02508 Rnf-Nqr subunit, membrane protein KHQ88_00950 PF03116 NQR2, RnfD, RnfE family KHQ88_00955 PF01965 DJ-1/PfpI family KHQ88_01010 PF01266 FAD dependent oxidoreductase KHQ88_01015 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_01015 PF17806 Sarcosine oxidase A3 domain KHQ88_01015 PF08669 Glycine cleavage T-protein C-terminal barrel domain KHQ88_01015 PF01571 Aminomethyltransferase folate-binding domain KHQ88_01025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ88_01025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ88_01045 PF00583 Acetyltransferase (GNAT) family KHQ88_01050 PF01594 AI-2E family transporter KHQ88_01070 PF00709 Adenylosuccinate synthetase KHQ88_01075 PF00206 Lyase KHQ88_01075 PF10397 Adenylosuccinate lyase C-terminus KHQ88_01080 PF01694 Rhomboid family KHQ88_01090 PF02595 Glycerate kinase family KHQ88_01100 PF00082 Subtilase family KHQ88_01120 PF14310 Fibronectin type III-like domain KHQ88_01120 PF00933 Glycosyl hydrolase family 3 N terminal domain KHQ88_01120 PF01915 Glycosyl hydrolase family 3 C-terminal domain KHQ88_01135 PF02127 Aminopeptidase I zinc metalloprotease (M18) KHQ88_01150 PF01814 Hemerythrin HHE cation binding domain KHQ88_01150 PF04405 Domain of Unknown function (DUF542) KHQ88_01240 PF11867 Domain of unknown function (DUF3387) KHQ88_01240 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KHQ88_01240 PF18766 SWI2/SNF2 ATPase KHQ88_01275 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_01275 PF03707 Bacterial signalling protein N terminal repeat KHQ88_01275 PF00563 EAL domain KHQ88_01285 PF00270 DEAD/DEAH box helicase KHQ88_01285 PF00271 Helicase conserved C-terminal domain KHQ88_01300 PF01966 HD domain KHQ88_01315 PF00294 pfkB family carbohydrate kinase KHQ88_01320 PF04227 Indigoidine synthase A like protein KHQ88_01330 PF00313 'Cold-shock' DNA-binding domain KHQ88_01340 PF02142 MGS-like domain KHQ88_01345 PF00294 pfkB family carbohydrate kinase KHQ88_01350 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ88_01360 PF00155 Aminotransferase class I and II KHQ88_01370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ88_01380 PF00403 Heavy-metal-associated domain KHQ88_01395 PF00440 Bacterial regulatory proteins, tetR family KHQ88_01395 PF08359 YsiA-like protein, C-terminal region KHQ88_01410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ88_01410 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KHQ88_01415 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KHQ88_01415 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KHQ88_01420 PF04199 Putative cyclase KHQ88_01425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KHQ88_01430 PF02567 Phenazine biosynthesis-like protein KHQ88_01435 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ88_01445 PF04439 Streptomycin adenylyltransferase KHQ88_01450 PF00440 Bacterial regulatory proteins, tetR family KHQ88_01465 PF07676 WD40-like Beta Propeller Repeat KHQ88_01465 PF00326 Prolyl oligopeptidase family KHQ88_01480 PF13732 Domain of unknown function (DUF4162) KHQ88_01480 PF00005 ABC transporter KHQ88_01490 PF03144 Elongation factor Tu domain 2 KHQ88_01490 PF00679 Elongation factor G C-terminus KHQ88_01490 PF00009 Elongation factor Tu GTP binding domain KHQ88_01500 PF01381 Helix-turn-helix KHQ88_01515 PF08378 Nuclease-related domain KHQ88_01520 PF01575 MaoC like domain KHQ88_01525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KHQ88_01525 PF02770 Acyl-CoA dehydrogenase, middle domain KHQ88_01525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KHQ88_01530 PF01012 Electron transfer flavoprotein domain KHQ88_01535 PF00766 Electron transfer flavoprotein FAD-binding domain KHQ88_01535 PF01012 Electron transfer flavoprotein domain KHQ88_01545 PF03466 LysR substrate binding domain KHQ88_01545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KHQ88_01550 PF02629 CoA binding domain KHQ88_01550 PF06971 Putative DNA-binding protein N-terminus KHQ88_01585 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_01595 PF03313 Serine dehydratase alpha chain KHQ88_01595 PF03315 Serine dehydratase beta chain KHQ88_01610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ88_01610 PF00037 4Fe-4S binding domain KHQ88_01610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KHQ88_01615 PF02906 Iron only hydrogenase large subunit, C-terminal domain KHQ88_01615 PF00037 4Fe-4S binding domain KHQ88_01615 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KHQ88_01615 PF02256 Iron hydrogenase small subunit KHQ88_01640 PF00156 Phosphoribosyl transferase domain KHQ88_01645 PF00117 Glutamine amidotransferase class-I KHQ88_01645 PF06418 CTP synthase N-terminus KHQ88_01665 PF00005 ABC transporter KHQ88_01700 PF02583 Metal-sensitive transcriptional repressor KHQ88_01705 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_01705 PF13192 Thioredoxin domain KHQ88_01710 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_01710 PF13192 Thioredoxin domain KHQ88_01715 PF00056 lactate/malate dehydrogenase, NAD binding domain KHQ88_01715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KHQ88_01720 PF01894 Uncharacterised protein family UPF0047 KHQ88_01740 PF09903 Uncharacterized protein conserved in bacteria (DUF2130) KHQ88_01740 PF09903 Uncharacterized protein conserved in bacteria (DUF2130) KHQ88_01745 PF11871 Domain of unknown function (DUF3391) KHQ88_01745 PF01966 HD domain KHQ88_01755 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ88_01755 PF14815 NUDIX domain KHQ88_01760 PF10011 Predicted membrane protein (DUF2254) KHQ88_01775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KHQ88_01785 PF01738 Dienelactone hydrolase family KHQ88_01795 PF00005 ABC transporter KHQ88_01805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KHQ88_01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_01810 PF01386 Ribosomal L25p family KHQ88_01810 PF14693 Ribosomal protein TL5, C-terminal domain KHQ88_01815 PF04542 Sigma-70 region 2 KHQ88_01815 PF04545 Sigma-70, region 4 KHQ88_01835 PF04231 Endonuclease I KHQ88_01845 PF01048 Phosphorylase superfamily KHQ88_01850 PF02073 Thermophilic metalloprotease (M29) KHQ88_01855 PF02615 Malate/L-lactate dehydrogenase KHQ88_01860 PF01641 SelR domain KHQ88_01875 PF02522 Aminoglycoside 3-N-acetyltransferase KHQ88_01890 PF07687 Peptidase dimerisation domain KHQ88_01890 PF01546 Peptidase family M20/M25/M40 KHQ88_01895 PF07859 alpha/beta hydrolase fold KHQ88_01910 PF02386 Cation transport protein KHQ88_01915 PF00625 Guanylate kinase KHQ88_01925 PF00085 Thioredoxin KHQ88_01930 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_01940 PF00491 Arginase family KHQ88_01945 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KHQ88_01945 PF01276 Orn/Lys/Arg decarboxylase, major domain KHQ88_01955 PF01212 Beta-eliminating lyase KHQ88_01960 PF10531 SLBB domain KHQ88_01960 PF13375 RnfC Barrel sandwich hybrid domain KHQ88_01960 PF13237 4Fe-4S dicluster domain KHQ88_01960 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ88_01965 PF03116 NQR2, RnfD, RnfE family KHQ88_01980 PF02508 Rnf-Nqr subunit, membrane protein KHQ88_01985 PF02508 Rnf-Nqr subunit, membrane protein KHQ88_02000 PF00221 Aromatic amino acid lyase KHQ88_02005 PF17391 Urocanase N-terminal domain KHQ88_02005 PF17392 Urocanase C-terminal domain KHQ88_02005 PF01175 Urocanase Rossmann-like domain KHQ88_02010 PF02971 Formiminotransferase domain KHQ88_02010 PF07837 Formiminotransferase domain, N-terminal subdomain KHQ88_02015 PF01979 Amidohydrolase family KHQ88_02020 PF04961 Formiminotransferase-cyclodeaminase KHQ88_02025 PF00923 Transaldolase/Fructose-6-phosphate aldolase KHQ88_02030 PF00873 AcrB/AcrD/AcrF family KHQ88_02040 PF00005 ABC transporter KHQ88_02040 PF02687 FtsX-like permease family KHQ88_02040 PF12704 MacB-like periplasmic core domain KHQ88_02045 PF00155 Aminotransferase class I and II KHQ88_02050 PF00106 short chain dehydrogenase KHQ88_02055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ88_02100 PF13188 PAS domain KHQ88_02100 PF03707 Bacterial signalling protein N terminal repeat KHQ88_02100 PF00563 EAL domain KHQ88_02100 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_02105 PF00255 Glutathione peroxidase KHQ88_02110 PF07690 Major Facilitator Superfamily KHQ88_02115 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KHQ88_02115 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KHQ88_02125 PF01168 Alanine racemase, N-terminal domain KHQ88_02130 PF13941 MutL protein KHQ88_02135 PF02310 B12 binding domain KHQ88_02135 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit KHQ88_02135 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase KHQ88_02140 PF16552 D-ornithine 4,5-aminomutase alpha-subunit KHQ88_02145 PF00291 Pyridoxal-phosphate dependent enzyme KHQ88_02160 PF00696 Amino acid kinase family KHQ88_02165 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ88_02165 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ88_02175 PF02926 THUMP domain KHQ88_02175 PF01170 Putative RNA methylase family UPF0020 KHQ88_02190 PF02001 Protein of unknown function DUF134 KHQ88_02200 PF10417 C-terminal domain of 1-Cys peroxiredoxin KHQ88_02200 PF00578 AhpC/TSA family KHQ88_02210 PF05239 PRC-barrel domain KHQ88_02210 PF01782 RimM N-terminal domain KHQ88_02215 PF01746 tRNA (Guanine-1)-methyltransferase KHQ88_02220 PF01245 Ribosomal protein L19 KHQ88_02225 PF00356 Bacterial regulatory proteins, lacI family KHQ88_02230 PF00579 tRNA synthetases class I (W and Y) KHQ88_02230 PF01479 S4 domain KHQ88_02235 PF03471 Transporter associated domain KHQ88_02235 PF01595 Cyclin M transmembrane N-terminal domain KHQ88_02235 PF00571 CBS domain KHQ88_02240 PF00403 Heavy-metal-associated domain KHQ88_02245 PF01546 Peptidase family M20/M25/M40 KHQ88_02250 PF02390 Putative methyltransferase KHQ88_02255 PF05343 M42 glutamyl aminopeptidase KHQ88_02265 PF03309 Type III pantothenate kinase KHQ88_02270 PF01367 5'-3' exonuclease, C-terminal SAM fold KHQ88_02270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KHQ88_02270 PF00476 DNA polymerase family A KHQ88_02275 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KHQ88_02275 PF06827 Zinc finger found in FPG and IleRS KHQ88_02275 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KHQ88_02280 PF01121 Dephospho-CoA kinase KHQ88_02285 PF07261 Replication initiation and membrane attachment KHQ88_02290 PF07319 Primosomal protein DnaI N-terminus KHQ88_02290 PF01695 IstB-like ATP binding protein KHQ88_02295 PF03129 Anticodon binding domain KHQ88_02295 PF02824 TGS domain KHQ88_02295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ88_02295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ88_02300 PF05670 NFACT protein RNA binding domain KHQ88_02305 PF00625 Guanylate kinase KHQ88_02310 PF01192 RNA polymerase Rpb6 KHQ88_02315 PF14480 DNA polymerase III polC-type N-terminus I KHQ88_02315 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ88_02315 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ88_02315 PF14579 Helix-hairpin-helix motif KHQ88_02315 PF02811 PHP domain KHQ88_02315 PF00929 Exonuclease KHQ88_02315 PF11490 DNA polymerase III polC-type N-terminus II KHQ88_02325 PF01409 tRNA synthetases class II core domain (F) KHQ88_02325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KHQ88_02330 PF01588 Putative tRNA binding domain KHQ88_02330 PF03147 Ferredoxin-fold anticodon binding domain KHQ88_02330 PF03484 tRNA synthetase B5 domain KHQ88_02330 PF03483 B3/4 domain KHQ88_02330 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KHQ88_02335 PF04055 Radical SAM superfamily KHQ88_02340 PF00365 Phosphofructokinase KHQ88_02345 PF02915 Rubrerythrin KHQ88_02350 PF03193 RsgA GTPase KHQ88_02350 PF16745 RsgA N-terminal domain KHQ88_02355 PF00834 Ribulose-phosphate 3 epimerase family KHQ88_02365 PF13180 PDZ domain KHQ88_02370 PF13180 PDZ domain KHQ88_02375 PF01042 Endoribonuclease L-PSP KHQ88_02380 PF00830 Ribosomal L28 family KHQ88_02385 PF13684 Dihydroxyacetone kinase family KHQ88_02385 PF02734 DAK2 domain KHQ88_02390 PF00270 DEAD/DEAH box helicase KHQ88_02390 PF17191 RecG wedge domain KHQ88_02390 PF00271 Helicase conserved C-terminal domain KHQ88_02395 PF02504 Fatty acid synthesis protein KHQ88_02400 PF14622 Ribonuclease-III-like KHQ88_02400 PF00035 Double-stranded RNA binding motif KHQ88_02410 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ88_02410 PF00633 Helix-hairpin-helix motif KHQ88_02410 PF10576 Iron-sulfur binding domain of endonuclease III KHQ88_02420 PF10609 NUBPL iron-transfer P-loop NTPase KHQ88_02430 PF01783 Ribosomal L32p protein family KHQ88_02435 PF01795 MraW methylase family KHQ88_02450 PF00924 Mechanosensitive ion channel KHQ88_02455 PF00005 ABC transporter KHQ88_02460 PF12704 MacB-like periplasmic core domain KHQ88_02460 PF02687 FtsX-like permease family KHQ88_02470 PF00152 tRNA synthetases class II (D, K and N) KHQ88_02470 PF01336 OB-fold nucleic acid binding domain KHQ88_02475 PF00849 RNA pseudouridylate synthase KHQ88_02480 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KHQ88_02480 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KHQ88_02485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ88_02485 PF09180 Prolyl-tRNA synthetase, C-terminal KHQ88_02485 PF03129 Anticodon binding domain KHQ88_02495 PF05681 Fumarate hydratase (Fumerase) KHQ88_02495 PF05683 Fumarase C-terminus KHQ88_02505 PF02645 Uncharacterised protein, DegV family COG1307 KHQ88_02510 PF00664 ABC transporter transmembrane region KHQ88_02510 PF00005 ABC transporter KHQ88_02515 PF00664 ABC transporter transmembrane region KHQ88_02515 PF00005 ABC transporter KHQ88_02525 PF00005 ABC transporter KHQ88_02525 PF00664 ABC transporter transmembrane region KHQ88_02530 PF00664 ABC transporter transmembrane region KHQ88_02530 PF00005 ABC transporter KHQ88_02535 PF00919 Uncharacterized protein family UPF0004 KHQ88_02535 PF18693 TRAM domain KHQ88_02535 PF04055 Radical SAM superfamily KHQ88_02545 PF07687 Peptidase dimerisation domain KHQ88_02545 PF01546 Peptidase family M20/M25/M40 KHQ88_02550 PF01979 Amidohydrolase family KHQ88_02555 PF00719 Inorganic pyrophosphatase KHQ88_02565 PF00381 PTS HPr component phosphorylation site KHQ88_02575 PF00579 tRNA synthetases class I (W and Y) KHQ88_02580 PF01432 Peptidase family M3 KHQ88_02580 PF08439 Oligopeptidase F KHQ88_02585 PF03960 ArsC family KHQ88_02590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KHQ88_02590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KHQ88_02600 PF05195 Aminopeptidase P, N-terminal domain KHQ88_02600 PF00557 Metallopeptidase family M24 KHQ88_02605 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KHQ88_02605 PF13538 UvrD-like helicase C-terminal domain KHQ88_02605 PF14490 Helix-hairpin-helix containing domain KHQ88_02610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ88_02610 PF01411 tRNA synthetases class II (A) KHQ88_02610 PF02272 DHHA1 domain KHQ88_02615 PF03652 Holliday junction resolvase KHQ88_02620 PF06949 Protein of unknown function (DUF1292) KHQ88_02625 PF01596 O-methyltransferase KHQ88_02635 PF16325 Peptidase family U32 C-terminal domain KHQ88_02635 PF01136 Peptidase family U32 KHQ88_02640 PF03449 Transcription elongation factor, N-terminal KHQ88_02640 PF01272 Transcription elongation factor, GreA/GreB, C-term KHQ88_02645 PF01048 Phosphorylase superfamily KHQ88_02660 PF01926 50S ribosome-binding GTPase KHQ88_02675 PF13649 Methyltransferase domain KHQ88_02680 PF10531 SLBB domain KHQ88_02690 PF06144 DNA polymerase III, delta subunit KHQ88_02695 PF01649 Ribosomal protein S20 KHQ88_02705 PF00391 PEP-utilising enzyme, mobile domain KHQ88_02705 PF00224 Pyruvate kinase, barrel domain KHQ88_02705 PF02887 Pyruvate kinase, alpha/beta domain KHQ88_02710 PF01610 Transposase KHQ88_02710 PF13542 Helix-turn-helix domain of transposase family ISL3 KHQ88_02710 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 KHQ88_02745 PF00072 Response regulator receiver domain KHQ88_02745 PF00486 Transcriptional regulatory protein, C terminal KHQ88_02750 PF13426 PAS domain KHQ88_02750 PF00512 His Kinase A (phospho-acceptor) domain KHQ88_02750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ88_02750 PF00672 HAMP domain KHQ88_02755 PF08818 Domain of unknown function (DU1801) KHQ88_02760 PF11188 Protein of unknown function (DUF2975) KHQ88_02770 PF01610 Transposase KHQ88_02770 PF13542 Helix-turn-helix domain of transposase family ISL3 KHQ88_02770 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 KHQ88_02790 PF12848 ABC transporter KHQ88_02790 PF00005 ABC transporter KHQ88_02790 PF16326 ABC transporter C-terminal domain KHQ88_02795 PF03485 Arginyl tRNA synthetase N terminal domain KHQ88_02795 PF05746 DALR anticodon binding domain KHQ88_02795 PF00750 tRNA synthetases class I (R) KHQ88_02800 PF00005 ABC transporter KHQ88_02800 PF00664 ABC transporter transmembrane region KHQ88_02805 PF00005 ABC transporter KHQ88_02805 PF00664 ABC transporter transmembrane region KHQ88_02820 PF00072 Response regulator receiver domain KHQ88_02825 PF00795 Carbon-nitrogen hydrolase KHQ88_02845 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_02850 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_02855 PF00171 Aldehyde dehydrogenase family KHQ88_02880 PF01545 Cation efflux family KHQ88_02895 PF00501 AMP-binding enzyme KHQ88_02895 PF13193 AMP-binding enzyme C-terminal domain KHQ88_02900 PF00440 Bacterial regulatory proteins, tetR family KHQ88_02920 PF00111 2Fe-2S iron-sulfur cluster binding domain KHQ88_02920 PF01799 [2Fe-2S] binding domain KHQ88_02925 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KHQ88_02925 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KHQ88_02945 PF01979 Amidohydrolase family KHQ88_02950 PF01979 Amidohydrolase family KHQ88_02955 PF01180 Dihydroorotate dehydrogenase KHQ88_02960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KHQ88_02960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KHQ88_02965 PF00111 2Fe-2S iron-sulfur cluster binding domain KHQ88_02965 PF01799 [2Fe-2S] binding domain KHQ88_02975 PF01979 Amidohydrolase family KHQ88_02975 PF13382 Adenine deaminase C-terminal domain KHQ88_02980 PF00291 Pyridoxal-phosphate dependent enzyme KHQ88_02985 PF00291 Pyridoxal-phosphate dependent enzyme KHQ88_02990 PF01546 Peptidase family M20/M25/M40 KHQ88_02990 PF07687 Peptidase dimerisation domain KHQ88_02995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ88_02995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ88_03005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ88_03015 PF03099 Biotin/lipoate A/B protein ligase family KHQ88_03015 PF10437 Bacterial lipoate protein ligase C-terminus KHQ88_03020 PF08669 Glycine cleavage T-protein C-terminal barrel domain KHQ88_03020 PF01571 Aminomethyltransferase folate-binding domain KHQ88_03025 PF01597 Glycine cleavage H-protein KHQ88_03030 PF02347 Glycine cleavage system P-protein KHQ88_03035 PF02347 Glycine cleavage system P-protein KHQ88_03045 PF17156 Gammaproteobacterial periplasmic sensor domain KHQ88_03045 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_03050 PF04551 GcpE protein KHQ88_03055 PF01063 Amino-transferase class IV KHQ88_03060 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KHQ88_03060 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KHQ88_03070 PF00266 Aminotransferase class-V KHQ88_03075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KHQ88_03075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ88_03085 PF00471 Ribosomal protein L33 KHQ88_03090 PF00753 Metallo-beta-lactamase superfamily KHQ88_03095 PF00072 Response regulator receiver domain KHQ88_03120 PF00248 Aldo/keto reductase family KHQ88_03125 PF00480 ROK family KHQ88_03125 PF01325 Iron dependent repressor, N-terminal DNA binding domain KHQ88_03130 PF01261 Xylose isomerase-like TIM barrel KHQ88_03135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ88_03135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ88_03140 PF00005 ABC transporter KHQ88_03145 PF02653 Branched-chain amino acid transport system / permease component KHQ88_03150 PF13407 Periplasmic binding protein domain KHQ88_03155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ88_03160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KHQ88_03160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ88_03165 PF01628 HrcA protein C terminal domain KHQ88_03170 PF01025 GrpE KHQ88_03175 PF00012 Hsp70 protein KHQ88_03180 PF00684 DnaJ central domain KHQ88_03180 PF01556 DnaJ C terminal domain KHQ88_03180 PF00226 DnaJ domain KHQ88_03185 PF03551 Transcriptional regulator PadR-like family KHQ88_03205 PF04452 RNA methyltransferase KHQ88_03210 PF04055 Radical SAM superfamily KHQ88_03210 PF00919 Uncharacterized protein family UPF0004 KHQ88_03210 PF01938 TRAM domain KHQ88_03220 PF01165 Ribosomal protein S21 KHQ88_03225 PF02562 PhoH-like protein KHQ88_03230 PF02130 Uncharacterized protein family UPF0054 KHQ88_03235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ88_03240 PF07650 KH domain KHQ88_03240 PF01926 50S ribosome-binding GTPase KHQ88_03245 PF11967 Recombination protein O N terminal KHQ88_03245 PF02565 Recombination protein O C terminal KHQ88_03260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ88_03260 PF03129 Anticodon binding domain KHQ88_03265 PF01807 CHC2 zinc finger KHQ88_03265 PF08275 DNA primase catalytic core, N-terminal domain KHQ88_03265 PF10410 DnaB-helicase binding domain of primase KHQ88_03270 PF04545 Sigma-70, region 4 KHQ88_03270 PF04539 Sigma-70 region 3 KHQ88_03270 PF04542 Sigma-70 region 2 KHQ88_03270 PF00140 Sigma-70 factor, region 1.2 KHQ88_03270 PF03979 Sigma-70 factor, region 1.1 KHQ88_03280 PF01784 NIF3 (NGG1p interacting factor 3) KHQ88_03285 PF02645 Uncharacterised protein, DegV family COG1307 KHQ88_03295 PF12838 4Fe-4S dicluster domain KHQ88_03300 PF03672 Uncharacterised protein family (UPF0154) KHQ88_03305 PF02660 Glycerol-3-phosphate acyltransferase KHQ88_03310 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ88_03310 PF01751 Toprim domain KHQ88_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ88_03310 PF00204 DNA gyrase B KHQ88_03315 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ88_03315 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ88_03330 PF17768 RecJ OB domain KHQ88_03330 PF01368 DHH family KHQ88_03330 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KHQ88_03330 PF02272 DHHA1 domain KHQ88_03335 PF00156 Phosphoribosyl transferase domain KHQ88_03340 PF13291 ACT domain KHQ88_03340 PF04607 Region found in RelA / SpoT proteins KHQ88_03340 PF02824 TGS domain KHQ88_03345 PF02580 D-Tyr-tRNA(Tyr) deacylase KHQ88_03350 PF00550 Phosphopantetheine attachment site KHQ88_03355 PF03129 Anticodon binding domain KHQ88_03355 PF13393 Histidyl-tRNA synthetase KHQ88_03360 PF01594 AI-2E family transporter KHQ88_03370 PF00899 ThiF family KHQ88_03375 PF01625 Peptide methionine sulfoxide reductase KHQ88_03380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ88_03385 PF00004 ATPase family associated with various cellular activities (AAA) KHQ88_03385 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ88_03385 PF02190 ATP-dependent protease La (LON) substrate-binding domain KHQ88_03395 PF01252 Signal peptidase (SPase) II KHQ88_03400 PF00849 RNA pseudouridylate synthase KHQ88_03400 PF01479 S4 domain KHQ88_03405 PF11858 Domain of unknown function (DUF3378) KHQ88_03405 PF01351 Ribonuclease HII KHQ88_03410 PF00488 MutS domain V KHQ88_03410 PF01713 Smr domain KHQ88_03415 PF16198 tRNA pseudouridylate synthase B C-terminal domain KHQ88_03415 PF01509 TruB family pseudouridylate synthase (N terminal domain) KHQ88_03420 PF01687 Riboflavin kinase KHQ88_03420 PF06574 FAD synthetase KHQ88_03430 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ88_03430 PF05697 Bacterial trigger factor protein (TF) KHQ88_03430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KHQ88_03435 PF02190 ATP-dependent protease La (LON) substrate-binding domain KHQ88_03435 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ88_03435 PF00004 ATPase family associated with various cellular activities (AAA) KHQ88_03445 PF00293 NUDIX domain KHQ88_03455 PF00312 Ribosomal protein S15 KHQ88_03460 PF00575 S1 RNA binding domain KHQ88_03460 PF03725 3' exoribonuclease family, domain 2 KHQ88_03460 PF01138 3' exoribonuclease family, domain 1 KHQ88_03460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KHQ88_03470 PF06421 GTP-binding protein LepA C-terminus KHQ88_03470 PF03144 Elongation factor Tu domain 2 KHQ88_03470 PF00009 Elongation factor Tu GTP binding domain KHQ88_03470 PF00679 Elongation factor G C-terminus KHQ88_03475 PF04055 Radical SAM superfamily KHQ88_03475 PF06969 HemN C-terminal domain KHQ88_03480 PF00589 Phage integrase family KHQ88_03480 PF02899 Phage integrase, N-terminal SAM-like domain KHQ88_03485 PF01676 Metalloenzyme superfamily KHQ88_03500 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ88_03500 PF05491 RuvB C-terminal winged helix domain KHQ88_03500 PF17864 RuvB AAA lid domain KHQ88_03505 PF02547 Queuosine biosynthesis protein KHQ88_03510 PF02592 Putative vitamin uptake transporter KHQ88_03515 PF06130 Phosphate propanoyltransferase KHQ88_03520 PF01702 Queuine tRNA-ribosyltransferase KHQ88_03525 PF12327 FtsZ family, C-terminal domain KHQ88_03525 PF00091 Tubulin/FtsZ family, GTPase domain KHQ88_03530 PF00571 CBS domain KHQ88_03530 PF03448 MgtE intracellular N domain KHQ88_03530 PF01769 Divalent cation transporter KHQ88_03535 PF00571 CBS domain KHQ88_03535 PF01769 Divalent cation transporter KHQ88_03535 PF03448 MgtE intracellular N domain KHQ88_03545 PF01975 Survival protein SurE KHQ88_03550 PF01168 Alanine racemase, N-terminal domain KHQ88_03555 PF04472 Cell division protein SepF KHQ88_03565 PF06827 Zinc finger found in FPG and IleRS KHQ88_03565 PF00133 tRNA synthetases class I (I, L, M and V) KHQ88_03565 PF08264 Anticodon-binding domain of tRNA KHQ88_03570 PF01791 DeoC/LacD family aldolase KHQ88_03580 PF01048 Phosphorylase superfamily KHQ88_03585 PF05193 Peptidase M16 inactive domain KHQ88_03595 PF01926 50S ribosome-binding GTPase KHQ88_03605 PF00293 NUDIX domain KHQ88_03605 PF13344 Haloacid dehalogenase-like hydrolase KHQ88_03610 PF10458 Valyl tRNA synthetase tRNA binding arm KHQ88_03610 PF08264 Anticodon-binding domain of tRNA KHQ88_03610 PF00133 tRNA synthetases class I (I, L, M and V) KHQ88_03615 PF02875 Mur ligase family, glutamate ligase domain KHQ88_03615 PF08245 Mur ligase middle domain KHQ88_03620 PF12826 Helix-hairpin-helix motif KHQ88_03620 PF04002 RadC-like JAB domain KHQ88_03645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ88_03645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ88_03660 PF00436 Single-strand binding protein family KHQ88_03665 PF00303 Thymidylate synthase KHQ88_03670 PF00186 Dihydrofolate reductase KHQ88_03680 PF02417 Chromate transporter KHQ88_03705 PF17820 PDZ domain KHQ88_03705 PF13180 PDZ domain KHQ88_03720 PF00149 Calcineurin-like phosphoesterase KHQ88_03720 PF02872 5'-nucleotidase, C-terminal domain KHQ88_03725 PF00300 Histidine phosphatase superfamily (branch 1) KHQ88_03725 PF13456 Reverse transcriptase-like KHQ88_03730 PF00591 Glycosyl transferase family, a/b domain KHQ88_03730 PF02885 Glycosyl transferase family, helical bundle domain KHQ88_03730 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KHQ88_03740 PF00183 Hsp90 protein KHQ88_03755 PF03951 Glutamine synthetase, beta-Grasp domain KHQ88_03755 PF00120 Glutamine synthetase, catalytic domain KHQ88_03760 PF03838 Recombination protein U KHQ88_03765 PF17770 Ribonuclease J C-terminal domain KHQ88_03765 PF00753 Metallo-beta-lactamase superfamily KHQ88_03765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ88_03770 PF00258 Flavodoxin KHQ88_03770 PF00753 Metallo-beta-lactamase superfamily KHQ88_03775 PF00535 Glycosyl transferase family 2 KHQ88_03780 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ88_03780 PF12002 MgsA AAA+ ATPase C terminal KHQ88_03780 PF16193 AAA C-terminal domain KHQ88_03790 PF17763 Glutaminase/Asparaginase C-terminal domain KHQ88_03790 PF00710 Asparaginase, N-terminal KHQ88_03795 PF01330 RuvA N terminal domain KHQ88_03795 PF07499 RuvA, C-terminal domain KHQ88_03800 PF01926 50S ribosome-binding GTPase KHQ88_03800 PF01018 GTP1/OBG KHQ88_03800 PF09269 Domain of unknown function (DUF1967) KHQ88_03815 PF01016 Ribosomal L27 protein KHQ88_03820 PF00829 Ribosomal prokaryotic L21 protein KHQ88_03845 PF01467 Cytidylyltransferase-like KHQ88_03855 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KHQ88_03855 PF00391 PEP-utilising enzyme, mobile domain KHQ88_03855 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ88_03865 PF00005 ABC transporter KHQ88_03875 PF00483 Nucleotidyl transferase KHQ88_03880 PF08323 Starch synthase catalytic domain KHQ88_03880 PF00534 Glycosyl transferases group 1 KHQ88_03890 PF00485 Phosphoribulokinase / Uridine kinase family KHQ88_03920 PF12679 ABC-2 family transporter protein KHQ88_03925 PF00005 ABC transporter KHQ88_03930 PF00453 Ribosomal protein L20 KHQ88_03935 PF01632 Ribosomal protein L35 KHQ88_03940 PF00707 Translation initiation factor IF-3, C-terminal domain KHQ88_03940 PF05198 Translation initiation factor IF-3, N-terminal domain KHQ88_03945 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ88_03945 PF00483 Nucleotidyl transferase KHQ88_03950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ88_03950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ88_03950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ88_03950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ88_03955 PF01380 SIS domain KHQ88_03965 PF00005 ABC transporter KHQ88_03990 PF02540 NAD synthase KHQ88_03990 PF00795 Carbon-nitrogen hydrolase KHQ88_03995 PF01467 Cytidylyltransferase-like KHQ88_04000 PF05343 M42 glutamyl aminopeptidase KHQ88_04005 PF00849 RNA pseudouridylate synthase KHQ88_04010 PF04167 Protein of unknown function (DUF402) KHQ88_04015 PF00588 SpoU rRNA Methylase family KHQ88_04020 PF00270 DEAD/DEAH box helicase KHQ88_04020 PF00271 Helicase conserved C-terminal domain KHQ88_04025 PF02401 LytB protein KHQ88_04035 PF13476 AAA domain KHQ88_04040 PF02779 Transketolase, pyrimidine binding domain KHQ88_04040 PF02780 Transketolase, C-terminal domain KHQ88_04040 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KHQ88_04045 PF02609 Exonuclease VII small subunit KHQ88_04050 PF13742 OB-fold nucleic acid binding domain KHQ88_04050 PF02601 Exonuclease VII, large subunit KHQ88_04055 PF01029 NusB family KHQ88_04070 PF01725 Ham1 family KHQ88_04075 PF02254 TrkA-N domain KHQ88_04075 PF02080 TrkA-C domain KHQ88_04085 PF13426 PAS domain KHQ88_04085 PF00512 His Kinase A (phospho-acceptor) domain KHQ88_04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ88_04085 PF00672 HAMP domain KHQ88_04090 PF00486 Transcriptional regulatory protein, C terminal KHQ88_04090 PF00072 Response regulator receiver domain KHQ88_04095 PF01895 PhoU domain KHQ88_04100 PF00005 ABC transporter KHQ88_04105 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_04110 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_04115 PF12849 PBP superfamily domain KHQ88_04120 PF00216 Bacterial DNA-binding protein KHQ88_04125 PF01926 50S ribosome-binding GTPase KHQ88_04125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KHQ88_04130 PF00575 S1 RNA binding domain KHQ88_04135 PF02224 Cytidylate kinase KHQ88_04140 PF01479 S4 domain KHQ88_04140 PF00849 RNA pseudouridylate synthase KHQ88_04145 PF01595 Cyclin M transmembrane N-terminal domain KHQ88_04145 PF03471 Transporter associated domain KHQ88_04145 PF00571 CBS domain KHQ88_04150 PF09285 Elongation factor P, C-terminal KHQ88_04150 PF08207 Elongation factor P (EF-P) KOW-like domain KHQ88_04150 PF01132 Elongation factor P (EF-P) OB domain KHQ88_04165 PF08676 MutL C terminal dimerisation domain KHQ88_04165 PF01119 DNA mismatch repair protein, C-terminal domain KHQ88_04170 PF00488 MutS domain V KHQ88_04170 PF05192 MutS domain III KHQ88_04170 PF05188 MutS domain II KHQ88_04170 PF05190 MutS family domain IV KHQ88_04170 PF01624 MutS domain I KHQ88_04180 PF00919 Uncharacterized protein family UPF0004 KHQ88_04180 PF01938 TRAM domain KHQ88_04180 PF04055 Radical SAM superfamily KHQ88_04185 PF13277 YmdB-like protein KHQ88_04195 PF12072 Domain of unknown function (DUF3552) KHQ88_04195 PF00013 KH domain KHQ88_04195 PF01966 HD domain KHQ88_04200 PF00154 recA bacterial DNA recombination protein KHQ88_04205 PF01066 CDP-alcohol phosphatidyltransferase KHQ88_04210 PF01709 Transcriptional regulator KHQ88_04215 PF13509 S1 domain KHQ88_04215 PF17783 CvfB-like winged helix domain KHQ88_04225 PF01546 Peptidase family M20/M25/M40 KHQ88_04225 PF07687 Peptidase dimerisation domain KHQ88_04250 PF13361 UvrD-like helicase C-terminal domain KHQ88_04250 PF12705 PD-(D/E)XK nuclease superfamily KHQ88_04250 PF00580 UvrD/REP helicase N-terminal domain KHQ88_04260 PF00884 Sulfatase KHQ88_04265 PF00011 Hsp20/alpha crystallin family KHQ88_04270 PF00291 Pyridoxal-phosphate dependent enzyme KHQ88_04275 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ88_04285 PF00266 Aminotransferase class-V KHQ88_04295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ88_04295 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_04300 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ88_04300 PF02861 Clp amino terminal domain, pathogenicity island component KHQ88_04300 PF17871 AAA lid domain KHQ88_04300 PF07724 AAA domain (Cdc48 subfamily) KHQ88_04300 PF00004 ATPase family associated with various cellular activities (AAA) KHQ88_04305 PF03707 Bacterial signalling protein N terminal repeat KHQ88_04305 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_04305 PF00563 EAL domain KHQ88_04310 PF00360 Phytochrome region KHQ88_04310 PF00563 EAL domain KHQ88_04310 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_04310 PF01590 GAF domain KHQ88_04315 PF01741 Large-conductance mechanosensitive channel, MscL KHQ88_04320 PF00301 Rubredoxin KHQ88_04345 PF08281 Sigma-70, region 4 KHQ88_04345 PF04542 Sigma-70 region 2 KHQ88_04360 PF11188 Protein of unknown function (DUF2975) KHQ88_04365 PF08818 Domain of unknown function (DU1801) KHQ88_04390 PF07581 The GLUG motif KHQ88_04390 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ88_04405 PF00072 Response regulator receiver domain KHQ88_04410 PF02645 Uncharacterised protein, DegV family COG1307 KHQ88_04420 PF00082 Subtilase family KHQ88_04445 PF08191 LRR adjacent KHQ88_04445 PF13855 Leucine rich repeat KHQ88_04445 PF12799 Leucine Rich repeats (2 copies) KHQ88_04445 PF06458 MucBP domain KHQ88_04450 PF03060 Nitronate monooxygenase KHQ88_04455 PF00565 Staphylococcal nuclease homologue KHQ88_04470 PF01145 SPFH domain / Band 7 family KHQ88_04470 PF16200 C-terminal region of band_7 KHQ88_04475 PF00271 Helicase conserved C-terminal domain KHQ88_04475 PF00270 DEAD/DEAH box helicase KHQ88_04500 PF08666 SAF domain KHQ88_04500 PF03102 NeuB family KHQ88_04505 PF02348 Cytidylyltransferase KHQ88_04510 PF02348 Cytidylyltransferase KHQ88_04515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KHQ88_04520 PF02719 Polysaccharide biosynthesis protein KHQ88_04540 PF01370 NAD dependent epimerase/dehydratase family KHQ88_04545 PF00535 Glycosyl transferase family 2 KHQ88_04555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KHQ88_04555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KHQ88_04555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KHQ88_04565 PF02397 Bacterial sugar transferase KHQ88_04570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KHQ88_04580 PF13419 Haloacid dehalogenase-like hydrolase KHQ88_04585 PF07478 D-ala D-ala ligase C-terminus KHQ88_04585 PF01820 D-ala D-ala ligase N-terminus KHQ88_04610 PF00392 Bacterial regulatory proteins, gntR family KHQ88_04620 PF00005 ABC transporter KHQ88_04625 PF00294 pfkB family carbohydrate kinase KHQ88_04640 PF00485 Phosphoribulokinase / Uridine kinase family KHQ88_04645 PF01032 FecCD transport family KHQ88_04650 PF01032 FecCD transport family KHQ88_04655 PF01497 Periplasmic binding protein KHQ88_04660 PF00005 ABC transporter KHQ88_04670 PF13087 AAA domain KHQ88_04670 PF13086 AAA domain KHQ88_04670 PF13195 Protein of unknown function (DUF4011) KHQ88_04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_04675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ88_04680 PF00364 Biotin-requiring enzyme KHQ88_04680 PF00682 HMGL-like KHQ88_04680 PF02436 Conserved carboxylase domain KHQ88_04690 PF00364 Biotin-requiring enzyme KHQ88_04695 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KHQ88_04710 PF02028 BCCT, betaine/carnitine/choline family transporter KHQ88_04725 PF01475 Ferric uptake regulator family KHQ88_04730 PF00950 ABC 3 transport family KHQ88_04735 PF00005 ABC transporter KHQ88_04740 PF01297 Zinc-uptake complex component A periplasmic KHQ88_04760 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_04765 PF00005 ABC transporter KHQ88_04775 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_04775 PF00563 EAL domain KHQ88_04775 PF13426 PAS domain KHQ88_04780 PF00871 Acetokinase family KHQ88_04785 PF01515 Phosphate acetyl/butaryl transferase KHQ88_04815 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KHQ88_04815 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KHQ88_04820 PF04231 Endonuclease I KHQ88_04830 PF10688 Bacterial inner membrane protein KHQ88_04845 PF02566 OsmC-like protein KHQ88_04850 PF00171 Aldehyde dehydrogenase family KHQ88_04855 PF01266 FAD dependent oxidoreductase KHQ88_04860 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_04860 PF04324 BFD-like [2Fe-2S] binding domain KHQ88_04870 PF17806 Sarcosine oxidase A3 domain KHQ88_04870 PF01571 Aminomethyltransferase folate-binding domain KHQ88_04870 PF08669 Glycine cleavage T-protein C-terminal barrel domain KHQ88_04870 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_04880 PF00155 Aminotransferase class I and II KHQ88_04880 PF00392 Bacterial regulatory proteins, gntR family KHQ88_04885 PF01680 SOR/SNZ family KHQ88_04890 PF01174 SNO glutamine amidotransferase family KHQ88_04895 PF01168 Alanine racemase, N-terminal domain KHQ88_04895 PF00842 Alanine racemase, C-terminal domain KHQ88_04900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ88_04900 PF02403 Seryl-tRNA synthetase N-terminal domain KHQ88_04905 PF01554 MatE KHQ88_04920 PF00365 Phosphofructokinase KHQ88_04930 PF00155 Aminotransferase class I and II KHQ88_04935 PF00107 Zinc-binding dehydrogenase KHQ88_04935 PF08240 Alcohol dehydrogenase GroES-like domain KHQ88_04950 PF13732 Domain of unknown function (DUF4162) KHQ88_04950 PF00005 ABC transporter KHQ88_04965 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ88_04970 PF00884 Sulfatase KHQ88_04975 PF01425 Amidase KHQ88_04985 PF03853 YjeF-related protein N-terminus KHQ88_04985 PF01256 Carbohydrate kinase KHQ88_04990 PF06874 Firmicute fructose-1,6-bisphosphatase KHQ88_05010 PF00005 ABC transporter KHQ88_05010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ88_05015 PF00005 ABC transporter KHQ88_05015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ88_05015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ88_05015 PF00005 ABC transporter KHQ88_05020 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ88_05020 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_05025 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_05050 PF03030 Inorganic H+ pyrophosphatase KHQ88_05060 PF00210 Ferritin-like domain KHQ88_05095 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KHQ88_05095 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KHQ88_05095 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KHQ88_05105 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KHQ88_05105 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KHQ88_05110 PF03006 Haemolysin-III related KHQ88_05120 PF02502 Ribose/Galactose Isomerase KHQ88_05125 PF00005 ABC transporter KHQ88_05130 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_05135 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ88_05140 PF08331 Domain of unknown function (DUF1730) KHQ88_05165 PF01613 Flavin reductase like domain KHQ88_05165 PF00753 Metallo-beta-lactamase superfamily KHQ88_05190 PF03372 Endonuclease/Exonuclease/phosphatase family KHQ88_05195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ88_05195 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ88_05205 PF00005 ABC transporter KHQ88_05215 PF01384 Phosphate transporter family KHQ88_05240 PF08241 Methyltransferase domain KHQ88_05245 PF13333 Integrase core domain KHQ88_05245 PF00665 Integrase core domain KHQ88_05245 PF13276 HTH-like domain KHQ88_05255 PF16916 Dimerisation domain of Zinc Transporter KHQ88_05255 PF01545 Cation efflux family KHQ88_05265 PF00403 Heavy-metal-associated domain KHQ88_05270 PF00486 Transcriptional regulatory protein, C terminal KHQ88_05270 PF00072 Response regulator receiver domain KHQ88_05295 PF01668 SmpB protein KHQ88_05300 PF00773 RNB domain KHQ88_05300 PF08206 Ribonuclease B OB domain KHQ88_05300 PF17876 Cold shock domain KHQ88_05300 PF00575 S1 RNA binding domain KHQ88_05310 PF03952 Enolase, N-terminal domain KHQ88_05310 PF00113 Enolase, C-terminal TIM barrel domain KHQ88_05320 PF01676 Metalloenzyme superfamily KHQ88_05320 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KHQ88_05335 PF03167 Uracil DNA glycosylase superfamily KHQ88_05345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ88_05345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ88_05345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ88_05345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ88_05350 PF00881 Nitroreductase family KHQ88_05365 PF12822 ECF transporter, substrate-specific component KHQ88_05370 PF04199 Putative cyclase KHQ88_05375 PF00343 Carbohydrate phosphorylase KHQ88_05380 PF00534 Glycosyl transferases group 1 KHQ88_05380 PF08323 Starch synthase catalytic domain KHQ88_05385 PF00483 Nucleotidyl transferase KHQ88_05390 PF00128 Alpha amylase, catalytic domain KHQ88_05390 PF02806 Alpha amylase, C-terminal all-beta domain KHQ88_05390 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ88_05395 PF02631 RecX family KHQ88_05400 PF00472 RF-1 domain KHQ88_05400 PF03462 PCRF domain KHQ88_05405 PF07516 SecA Wing and Scaffold domain KHQ88_05405 PF01043 SecA preprotein cross-linking domain KHQ88_05405 PF07517 SecA DEAD-like domain KHQ88_05405 PF02810 SEC-C motif KHQ88_05410 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KHQ88_05410 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KHQ88_05420 PF04851 Type III restriction enzyme, res subunit KHQ88_05420 PF00271 Helicase conserved C-terminal domain KHQ88_05425 PF08264 Anticodon-binding domain of tRNA KHQ88_05425 PF00133 tRNA synthetases class I (I, L, M and V) KHQ88_05425 PF13603 Leucyl-tRNA synthetase, Domain 2 KHQ88_05425 PF09334 tRNA synthetases class I (M) KHQ88_05435 PF16199 Radical_SAM C-terminal domain KHQ88_05435 PF04055 Radical SAM superfamily KHQ88_05440 PF00892 EamA-like transporter family KHQ88_05445 PF06962 Putative rRNA methylase KHQ88_05455 PF00438 S-adenosylmethionine synthetase, N-terminal domain KHQ88_05455 PF02772 S-adenosylmethionine synthetase, central domain KHQ88_05455 PF02773 S-adenosylmethionine synthetase, C-terminal domain KHQ88_05465 PF04608 Phosphatidylglycerophosphatase A KHQ88_05470 PF00551 Formyl transferase KHQ88_05470 PF02911 Formyl transferase, C-terminal domain KHQ88_05475 PF00271 Helicase conserved C-terminal domain KHQ88_05475 PF18074 Primosomal protein N C-terminal domain KHQ88_05475 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KHQ88_05475 PF04851 Type III restriction enzyme, res subunit KHQ88_05475 PF17764 3′ DNA-binding domain (3′BD) KHQ88_05480 PF00753 Metallo-beta-lactamase superfamily KHQ88_05480 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ88_05480 PF17770 Ribonuclease J C-terminal domain KHQ88_05490 PF01541 GIY-YIG catalytic domain KHQ88_05490 PF02151 UvrB/uvrC motif KHQ88_05490 PF08459 UvrC Helix-hairpin-helix N-terminal KHQ88_05495 PF02033 Ribosome-binding factor A KHQ88_05500 PF11987 Translation-initiation factor 2 KHQ88_05500 PF00009 Elongation factor Tu GTP binding domain KHQ88_05500 PF04760 Translation initiation factor IF-2, N-terminal region KHQ88_05510 PF04296 Protein of unknown function (DUF448) KHQ88_05515 PF00575 S1 RNA binding domain KHQ88_05515 PF08529 NusA N-terminal domain KHQ88_05515 PF13184 NusA-like KH domain KHQ88_05520 PF02576 RimP N-terminal domain KHQ88_05520 PF17384 RimP C-terminal SH3 domain KHQ88_05530 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ88_05530 PF00588 SpoU rRNA Methylase family KHQ88_05540 PF13302 Acetyltransferase (GNAT) domain KHQ88_05545 PF02926 THUMP domain KHQ88_05545 PF02568 Thiamine biosynthesis protein (ThiI) KHQ88_05550 PF13185 GAF domain KHQ88_05555 PF01479 S4 domain KHQ88_05555 PF00163 Ribosomal protein S4/S9 N-terminal domain KHQ88_05560 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_05560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ88_05565 PF00121 Triosephosphate isomerase KHQ88_05570 PF00162 Phosphoglycerate kinase KHQ88_05580 PF06153 Cyclic-di-AMP receptor KHQ88_05595 PF01458 Uncharacterized protein family (UPF0051) KHQ88_05600 PF01592 NifU-like N terminal domain KHQ88_05605 PF00266 Aminotransferase class-V KHQ88_05610 PF01458 Uncharacterized protein family (UPF0051) KHQ88_05615 PF00005 ABC transporter KHQ88_05620 PF02308 MgtC family KHQ88_05625 PF16916 Dimerisation domain of Zinc Transporter KHQ88_05625 PF01545 Cation efflux family KHQ88_05635 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KHQ88_05635 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KHQ88_05635 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KHQ88_05635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ88_05635 PF10371 Domain of unknown function KHQ88_05640 PF00753 Metallo-beta-lactamase superfamily KHQ88_05685 PF00561 alpha/beta hydrolase fold KHQ88_05690 PF00561 alpha/beta hydrolase fold KHQ88_05695 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KHQ88_05695 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KHQ88_05705 PF00005 ABC transporter KHQ88_05710 PF00005 ABC transporter KHQ88_05710 PF12399 Branched-chain amino acid ATP-binding cassette transporter KHQ88_05720 PF02653 Branched-chain amino acid transport system / permease component KHQ88_05725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ88_05725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ88_05735 PF00108 Thiolase, N-terminal domain KHQ88_05735 PF02803 Thiolase, C-terminal domain KHQ88_05740 PF00440 Bacterial regulatory proteins, tetR family KHQ88_05745 PF00563 EAL domain KHQ88_05745 PF01590 GAF domain KHQ88_05745 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_05745 PF00360 Phytochrome region KHQ88_05750 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_05750 PF00498 FHA domain KHQ88_05750 PF00563 EAL domain KHQ88_05770 PF01966 HD domain KHQ88_05775 PF17999 Pullulanase N1-terminal domain KHQ88_05775 PF00128 Alpha amylase, catalytic domain KHQ88_05775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ88_05780 PF13735 tRNA nucleotidyltransferase domain 2 putative KHQ88_05780 PF12627 Probable RNA and SrmB- binding site of polymerase A KHQ88_05780 PF01743 Poly A polymerase head domain KHQ88_05785 PF01205 Uncharacterized protein family UPF0029 KHQ88_05785 PF09186 Domain of unknown function (DUF1949) KHQ88_05820 PF03551 Transcriptional regulator PadR-like family KHQ88_05825 PF02645 Uncharacterised protein, DegV family COG1307 KHQ88_05830 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_05830 PF17155 Gammaproteobacterial periplasmic sensor domain KHQ88_05850 PF00886 Ribosomal protein S16 KHQ88_05860 PF01327 Polypeptide deformylase KHQ88_05865 PF02645 Uncharacterised protein, DegV family COG1307 KHQ88_05870 PF03051 Peptidase C1-like family KHQ88_05875 PF00175 Oxidoreductase NAD-binding domain KHQ88_05875 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KHQ88_05880 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_05880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KHQ88_05890 PF00005 ABC transporter KHQ88_05910 PF00155 Aminotransferase class I and II KHQ88_05915 PF08448 PAS fold KHQ88_05915 PF00990 Diguanylate cyclase, GGDEF domain KHQ88_05925 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KHQ88_05930 PF01569 PAP2 superfamily KHQ88_05935 PF00860 Permease family KHQ88_05940 PF00860 Permease family KHQ88_05945 PF01699 Sodium/calcium exchanger protein KHQ88_05980 PF00005 ABC transporter KHQ88_05980 PF00664 ABC transporter transmembrane region KHQ88_06005 PF03412 Peptidase C39 family KHQ88_06005 PF00005 ABC transporter KHQ88_06005 PF00664 ABC transporter transmembrane region KHQ88_06045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KHQ88_06055 PF02867 Ribonucleotide reductase, barrel domain KHQ88_06055 PF08471 Class II vitamin B12-dependent ribonucleotide reductase KHQ88_06060 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ88_06065 PF03313 Serine dehydratase alpha chain KHQ88_06070 PF16491 CAAX prenyl protease N-terminal, five membrane helices KHQ88_06070 PF01435 Peptidase family M48 KHQ88_06080 PF00676 Dehydrogenase E1 component KHQ88_06085 PF02780 Transketolase, C-terminal domain KHQ88_06085 PF02779 Transketolase, pyrimidine binding domain KHQ88_06090 PF02817 e3 binding domain KHQ88_06090 PF00364 Biotin-requiring enzyme KHQ88_06090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KHQ88_06095 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ88_06100 PF03099 Biotin/lipoate A/B protein ligase family KHQ88_06100 PF10437 Bacterial lipoate protein ligase C-terminus KHQ88_06110 PF00361 Proton-conducting membrane transporter KHQ88_06115 PF00361 Proton-conducting membrane transporter KHQ88_06120 PF00361 Proton-conducting membrane transporter KHQ88_06130 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KHQ88_06145 PF03334 Na+/H+ antiporter subunit KHQ88_06150 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KHQ88_06160 PF00465 Iron-containing alcohol dehydrogenase KHQ88_06185 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KHQ88_06185 PF00437 Type II/IV secretion system protein KHQ88_06190 PF00482 Type II secretion system (T2SS), protein F KHQ88_06195 PF08334 Type II secretion system (T2SS), protein G KHQ88_06195 PF07963 Prokaryotic N-terminal methylation motif KHQ88_06200 PF07963 Prokaryotic N-terminal methylation motif KHQ88_06200 PF00114 Pilin (bacterial filament) KHQ88_06210 PF06750 Bacterial Peptidase A24 N-terminal domain KHQ88_06210 PF01478 Type IV leader peptidase family KHQ88_06225 PF00199 Catalase KHQ88_06225 PF06628 Catalase-related immune-responsive KHQ88_06230 PF04304 Protein of unknown function (DUF454) KHQ88_06250 PF03883 Peroxide stress protein YaaA KHQ88_06255 PF00884 Sulfatase KHQ88_06260 PF13635 Domain of unknown function (DUF4143) KHQ88_06260 PF13173 AAA domain KHQ88_06310 PF04055 Radical SAM superfamily KHQ88_06310 PF13186 Iron-sulfur cluster-binding domain KHQ88_06355 PF13180 PDZ domain KHQ88_06355 PF02163 Peptidase family M50 KHQ88_06360 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KHQ88_06360 PF13288 DXP reductoisomerase C-terminal domain KHQ88_06360 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KHQ88_06370 PF01255 Putative undecaprenyl diphosphate synthase KHQ88_06375 PF01765 Ribosome recycling factor KHQ88_06380 PF00696 Amino acid kinase family KHQ88_06385 PF00889 Elongation factor TS KHQ88_06390 PF00318 Ribosomal protein S2 KHQ88_06395 PF00692 dUTPase KHQ88_06400 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KHQ88_06400 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KHQ88_06405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ88_06405 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ88_06410 PF00231 ATP synthase KHQ88_06415 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ88_06415 PF00306 ATP synthase alpha/beta chain, C terminal domain KHQ88_06415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ88_06420 PF00213 ATP synthase delta (OSCP) subunit KHQ88_06425 PF00430 ATP synthase B/B' CF(0) KHQ88_06435 PF00119 ATP synthase A chain KHQ88_06455 PF13419 Haloacid dehalogenase-like hydrolase KHQ88_06460 PF01351 Ribonuclease HII KHQ88_06465 PF01926 50S ribosome-binding GTPase KHQ88_06470 PF10502 Signal peptidase, peptidase S26 KHQ88_06475 PF17854 FtsK alpha domain KHQ88_06475 PF01580 FtsK/SpoIIIE family KHQ88_06475 PF09397 Ftsk gamma domain KHQ88_06490 PF00448 SRP54-type protein, GTPase domain KHQ88_06490 PF02881 SRP54-type protein, helical bundle domain KHQ88_06490 PF02978 Signal peptide binding domain KHQ88_06495 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KHQ88_06500 PF00448 SRP54-type protein, GTPase domain KHQ88_06500 PF02881 SRP54-type protein, helical bundle domain KHQ88_06505 PF01131 DNA topoisomerase KHQ88_06505 PF01396 Topoisomerase DNA binding C4 zinc finger KHQ88_06505 PF01751 Toprim domain KHQ88_06510 PF17827 PrmC N-terminal domain KHQ88_06510 PF13847 Methyltransferase domain KHQ88_06515 PF00472 RF-1 domain KHQ88_06515 PF03462 PCRF domain KHQ88_06520 PF03796 DnaB-like helicase C terminal domain KHQ88_06520 PF00772 DnaB-like helicase N terminal domain KHQ88_06525 PF01368 DHH family KHQ88_06525 PF03948 Ribosomal protein L9, C-terminal domain KHQ88_06525 PF01281 Ribosomal protein L9, N-terminal domain KHQ88_06525 PF02272 DHHA1 domain KHQ88_06530 PF01084 Ribosomal protein S18 KHQ88_06535 PF00436 Single-strand binding protein family KHQ88_06540 PF01250 Ribosomal protein S6 KHQ88_06555 PF18146 Damage-inducible protein CinA KH domain KHQ88_06555 PF00994 Probable molybdopterin binding domain KHQ88_06555 PF02464 Competence-damaged protein KHQ88_06560 PF01926 50S ribosome-binding GTPase KHQ88_06560 PF06071 Protein of unknown function (DUF933) KHQ88_06565 PF01026 TatD related DNase KHQ88_06570 PF02780 Transketolase, C-terminal domain KHQ88_06570 PF00456 Transketolase, thiamine diphosphate binding domain KHQ88_06570 PF02779 Transketolase, pyrimidine binding domain KHQ88_06575 PF03143 Elongation factor Tu C-terminal domain KHQ88_06575 PF03144 Elongation factor Tu domain 2 KHQ88_06575 PF00009 Elongation factor Tu GTP binding domain KHQ88_06580 PF00009 Elongation factor Tu GTP binding domain KHQ88_06580 PF03764 Elongation factor G, domain IV KHQ88_06580 PF14492 Elongation Factor G, domain II KHQ88_06580 PF03144 Elongation factor Tu domain 2 KHQ88_06580 PF00679 Elongation factor G C-terminus KHQ88_06585 PF00177 Ribosomal protein S7p/S5e KHQ88_06590 PF00164 Ribosomal protein S12/S23 KHQ88_06600 PF00293 NUDIX domain KHQ88_06645 PF04997 RNA polymerase Rpb1, domain 1 KHQ88_06645 PF00623 RNA polymerase Rpb1, domain 2 KHQ88_06645 PF04983 RNA polymerase Rpb1, domain 3 KHQ88_06645 PF05000 RNA polymerase Rpb1, domain 4 KHQ88_06645 PF04998 RNA polymerase Rpb1, domain 5 KHQ88_06650 PF04563 RNA polymerase beta subunit KHQ88_06650 PF04561 RNA polymerase Rpb2, domain 2 KHQ88_06650 PF10385 RNA polymerase beta subunit external 1 domain KHQ88_06650 PF00562 RNA polymerase Rpb2, domain 6 KHQ88_06650 PF04565 RNA polymerase Rpb2, domain 3 KHQ88_06650 PF04560 RNA polymerase Rpb2, domain 7 KHQ88_06655 PF05175 Methyltransferase small domain KHQ88_06660 PF16320 Ribosomal protein L7/L12 dimerisation domain KHQ88_06660 PF00542 Ribosomal protein L7/L12 C-terminal domain KHQ88_06665 PF00466 Ribosomal protein L10 KHQ88_06670 PF00687 Ribosomal protein L1p/L10e family KHQ88_06675 PF00298 Ribosomal protein L11, RNA binding domain KHQ88_06675 PF03946 Ribosomal protein L11, N-terminal domain KHQ88_06680 PF00005 ABC transporter KHQ88_06685 PF12704 MacB-like periplasmic core domain KHQ88_06685 PF00005 ABC transporter KHQ88_06685 PF02687 FtsX-like permease family KHQ88_06690 PF02357 Transcription termination factor nusG KHQ88_06690 PF00467 KOW motif KHQ88_06700 PF00471 Ribosomal protein L33 KHQ88_06710 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ88_06710 PF00588 SpoU rRNA Methylase family KHQ88_06715 PF00636 Ribonuclease III domain KHQ88_06720 PF09190 DALR domain KHQ88_06720 PF01406 tRNA synthetases class I (C) catalytic domain KHQ88_06725 PF00313 'Cold-shock' DNA-binding domain KHQ88_06730 PF02646 RmuC family KHQ88_06735 PF13091 PLD-like domain KHQ88_06735 PF13396 Phospholipase_D-nuclease N-terminal KHQ88_06745 PF00380 Ribosomal protein S9/S16 KHQ88_06750 PF00572 Ribosomal protein L13 KHQ88_06755 PF08264 Anticodon-binding domain of tRNA KHQ88_06755 PF01588 Putative tRNA binding domain KHQ88_06755 PF09334 tRNA synthetases class I (M) KHQ88_06760 PF01965 DJ-1/PfpI family KHQ88_06765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KHQ88_06770 PF05175 Methyltransferase small domain KHQ88_06775 PF04468 PSP1 C-terminal conserved region KHQ88_06780 PF09115 DNA polymerase III, delta subunit, C terminal KHQ88_06785 PF02223 Thymidylate kinase KHQ88_06790 PF00005 ABC transporter KHQ88_06795 PF00950 ABC 3 transport family KHQ88_06800 PF01416 tRNA pseudouridine synthase KHQ88_06805 PF02361 Cobalt transport protein KHQ88_06810 PF00005 ABC transporter KHQ88_06815 PF00005 ABC transporter KHQ88_06825 PF01196 Ribosomal protein L17 KHQ88_06830 PF01000 RNA polymerase Rpb3/RpoA insert domain KHQ88_06830 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KHQ88_06830 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KHQ88_06835 PF00411 Ribosomal protein S11 KHQ88_06840 PF00416 Ribosomal protein S13/S18 KHQ88_06845 PF00444 Ribosomal protein L36 KHQ88_06850 PF01176 Translation initiation factor 1A / IF-1 KHQ88_06855 PF00557 Metallopeptidase family M24 KHQ88_06860 PF05191 Adenylate kinase, active site lid KHQ88_06865 PF00344 SecY translocase KHQ88_06870 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KHQ88_06875 PF00327 Ribosomal protein L30p/L7e KHQ88_06880 PF03719 Ribosomal protein S5, C-terminal domain KHQ88_06880 PF00333 Ribosomal protein S5, N-terminal domain KHQ88_06885 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KHQ88_06890 PF00347 Ribosomal protein L6 KHQ88_06895 PF00410 Ribosomal protein S8 KHQ88_06900 PF00253 Ribosomal protein S14p/S29e KHQ88_06905 PF00673 ribosomal L5P family C-terminus KHQ88_06905 PF00281 Ribosomal protein L5 KHQ88_06910 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KHQ88_06910 PF00467 KOW motif KHQ88_06915 PF00238 Ribosomal protein L14p/L23e KHQ88_06920 PF00366 Ribosomal protein S17 KHQ88_06925 PF00831 Ribosomal L29 protein KHQ88_06930 PF00252 Ribosomal protein L16p/L10e KHQ88_06935 PF00189 Ribosomal protein S3, C-terminal domain KHQ88_06935 PF07650 KH domain KHQ88_06940 PF00237 Ribosomal protein L22p/L17e KHQ88_06945 PF00203 Ribosomal protein S19 KHQ88_06950 PF03947 Ribosomal Proteins L2, C-terminal domain KHQ88_06950 PF00181 Ribosomal Proteins L2, RNA binding domain KHQ88_06955 PF00276 Ribosomal protein L23 KHQ88_06960 PF00573 Ribosomal protein L4/L1 family KHQ88_06965 PF00297 Ribosomal protein L3 KHQ88_06970 PF00338 Ribosomal protein S10p/S20e KHQ88_06975 PF00929 Exonuclease KHQ88_06975 PF04851 Type III restriction enzyme, res subunit KHQ88_06975 PF13307 Helicase C-terminal domain KHQ88_06985 PF02535 ZIP Zinc transporter KHQ88_06990 PF00465 Iron-containing alcohol dehydrogenase KHQ88_06995 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ88_07010 PF00690 Cation transporter/ATPase, N-terminus KHQ88_07010 PF00689 Cation transporting ATPase, C-terminus KHQ88_07020 PF00248 Aldo/keto reductase family KHQ88_07025 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KHQ88_07045 PF00106 short chain dehydrogenase KHQ88_07050 PF00665 Integrase core domain KHQ88_07050 PF13333 Integrase core domain KHQ88_07050 PF13276 HTH-like domain KHQ88_07065 PF07581 The GLUG motif KHQ88_07065 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ88_07135 PF17762 HTH domain found in ParB protein KHQ88_07135 PF02195 ParB-like nuclease domain KHQ88_07155 PF02527 rRNA small subunit methyltransferase G KHQ88_07160 PF13932 GidA associated domain KHQ88_07160 PF01134 Glucose inhibited division protein A KHQ88_07175 PF14437 MafB19-like deaminase KHQ88_07180 PF00265 Thymidine kinase KHQ88_07185 PF01197 Ribosomal protein L31 KHQ88_07190 PF00390 Malic enzyme, N-terminal domain KHQ88_07190 PF03949 Malic enzyme, NAD binding domain KHQ88_07195 PF02545 Maf-like protein KHQ88_07200 PF01171 PP-loop family KHQ88_07200 PF00156 Phosphoribosyl transferase domain KHQ88_07200 PF11734 TilS substrate C-terminal domain KHQ88_07205 PF00004 ATPase family associated with various cellular activities (AAA) KHQ88_07205 PF17862 AAA+ lid domain KHQ88_07205 PF01434 Peptidase family M41 KHQ88_07210 PF01479 S4 domain KHQ88_07220 PF00152 tRNA synthetases class II (D, K and N) KHQ88_07220 PF01336 OB-fold nucleic acid binding domain KHQ88_07245 PF01116 Fructose-bisphosphate aldolase class-II KHQ88_07250 PF01523 Putative modulator of DNA gyrase KHQ88_07255 PF01523 Putative modulator of DNA gyrase KHQ88_07260 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KHQ88_07270 PF02690 Na+/Pi-cotransporter KHQ88_07275 PF01368 DHH family KHQ88_07275 PF02272 DHHA1 domain KHQ88_07285 PF04231 Endonuclease I KHQ88_07310 PF00528 Binding-protein-dependent transport system inner membrane component KHQ88_07315 PF17912 MalK OB fold domain KHQ88_07315 PF00005 ABC transporter KHQ88_07325 PF00565 Staphylococcal nuclease homologue KHQ88_07335 PF02132 RecR protein KHQ88_07335 PF13662 Toprim domain KHQ88_07340 PF02575 YbaB/EbfC DNA-binding family KHQ88_07345 PF12169 DNA polymerase III subunits gamma and tau domain III KHQ88_07355 PF12631 MnmE helical domain KHQ88_07355 PF10396 GTP-binding protein TrmE N-terminus KHQ88_07355 PF01926 50S ribosome-binding GTPase KHQ88_07360 PF01171 PP-loop family KHQ88_07380 PF01145 SPFH domain / Band 7 family KHQ88_07395 PF01336 OB-fold nucleic acid binding domain KHQ88_07395 PF00152 tRNA synthetases class II (D, K and N) KHQ88_07405 PF14572 Phosphoribosyl synthetase-associated domain KHQ88_07405 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ88_07410 PF04026 SpoVG KHQ88_07415 PF08544 GHMP kinases C terminal KHQ88_07415 PF00288 GHMP kinases N terminal domain KHQ88_07425 PF00817 impB/mucB/samB family KHQ88_07425 PF11799 impB/mucB/samB family C-terminal domain KHQ88_07425 PF11798 IMS family HHH motif KHQ88_07430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KHQ88_07430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KHQ88_07435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ88_07440 PF01761 3-dehydroquinate synthase KHQ88_07445 PF01264 Chorismate synthase KHQ88_07450 PF08501 Shikimate dehydrogenase substrate binding domain KHQ88_07455 PF01220 Dehydroquinase class II KHQ88_07460 PF18152 DAHP synthase ferredoxin-like domain KHQ88_07460 PF00793 DAHP synthetase I family KHQ88_07475 PF12848 ABC transporter KHQ88_07475 PF00005 ABC transporter KHQ88_07480 PF00712 DNA polymerase III beta subunit, N-terminal domain KHQ88_07480 PF02767 DNA polymerase III beta subunit, central domain KHQ88_07480 PF02768 DNA polymerase III beta subunit, C-terminal domain KHQ88_07485 PF00308 Bacterial dnaA protein KHQ88_07485 PF08299 Bacterial dnaA protein helix-turn-helix KHQ88_07485 PF11638 DnaA N-terminal domain KHQ88_07490 PF00468 Ribosomal protein L34 KHQ88_07495 PF00825 Ribonuclease P KHQ88_07500 PF02096 60Kd inner membrane protein KHQ88_07510 PF01195 Peptidyl-tRNA hydrolase KHQ88_07515 PF01230 HIT domain KHQ88_07520 PF13419 Haloacid dehalogenase-like hydrolase KHQ88_07525 PF00781 Diacylglycerol kinase catalytic domain KHQ88_07530 PF13331 Domain of unknown function (DUF4093) KHQ88_07530 PF01751 Toprim domain KHQ88_07535 PF00398 Ribosomal RNA adenine dimethylase KHQ88_07540 PF00464 Serine hydroxymethyltransferase KHQ88_07545 PF01430 Hsp33 protein KHQ88_07550 PF01207 Dihydrouridine synthase (Dus) KHQ88_07570 PF00535 Glycosyl transferase family 2 KHQ88_07580 PF02457 DisA bacterial checkpoint controller nucleotide-binding KHQ88_07595 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KHQ88_07600 PF02542 YgbB family KHQ88_07610 PF01106 NifU-like domain KHQ88_07615 PF04608 Phosphatidylglycerophosphatase A