locus-tag class description HF295_00010 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain HF295_00010 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain HF295_00020 PF01168 Alanine racemase, N-terminal domain HF295_00025 PF13941 MutL protein HF295_00030 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase HF295_00030 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit HF295_00030 PF02310 B12 binding domain HF295_00035 PF16552 D-ornithine 4,5-aminomutase alpha-subunit HF295_00040 PF00291 Pyridoxal-phosphate dependent enzyme HF295_00055 PF00696 Amino acid kinase family HF295_00060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HF295_00060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HF295_00070 PF02926 THUMP domain HF295_00070 PF01170 Putative RNA methylase family UPF0020 HF295_00085 PF02001 Protein of unknown function DUF134 HF295_00095 PF10417 C-terminal domain of 1-Cys peroxiredoxin HF295_00095 PF00578 AhpC/TSA family HF295_00105 PF05239 PRC-barrel domain HF295_00105 PF01782 RimM N-terminal domain HF295_00110 PF01746 tRNA (Guanine-1)-methyltransferase HF295_00115 PF01245 Ribosomal protein L19 HF295_00120 PF00356 Bacterial regulatory proteins, lacI family HF295_00125 PF00579 tRNA synthetases class I (W and Y) HF295_00125 PF01479 S4 domain HF295_00130 PF03471 Transporter associated domain HF295_00130 PF00571 CBS domain HF295_00130 PF01595 Cyclin M transmembrane N-terminal domain HF295_00135 PF00403 Heavy-metal-associated domain HF295_00140 PF01546 Peptidase family M20/M25/M40 HF295_00145 PF02390 Putative methyltransferase HF295_00150 PF05343 M42 glutamyl aminopeptidase HF295_00160 PF03309 Type III pantothenate kinase HF295_00165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HF295_00165 PF00476 DNA polymerase family A HF295_00165 PF01367 5'-3' exonuclease, C-terminal SAM fold HF295_00170 PF06827 Zinc finger found in FPG and IleRS HF295_00170 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HF295_00170 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HF295_00175 PF01121 Dephospho-CoA kinase HF295_00180 PF07261 Replication initiation and membrane attachment HF295_00185 PF01695 IstB-like ATP binding protein HF295_00185 PF07319 Primosomal protein DnaI N-terminus HF295_00190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HF295_00190 PF02824 TGS domain HF295_00190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF295_00190 PF03129 Anticodon binding domain HF295_00195 PF05670 NFACT protein RNA binding domain HF295_00200 PF00625 Guanylate kinase HF295_00205 PF01192 RNA polymerase Rpb6 HF295_00210 PF14480 DNA polymerase III polC-type N-terminus I HF295_00210 PF11490 DNA polymerase III polC-type N-terminus II HF295_00210 PF07733 Bacterial DNA polymerase III alpha NTPase domain HF295_00210 PF00929 Exonuclease HF295_00210 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HF295_00210 PF02811 PHP domain HF295_00210 PF14579 Helix-hairpin-helix motif HF295_00220 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HF295_00220 PF01409 tRNA synthetases class II core domain (F) HF295_00225 PF03484 tRNA synthetase B5 domain HF295_00225 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HF295_00225 PF03483 B3/4 domain HF295_00225 PF03147 Ferredoxin-fold anticodon binding domain HF295_00225 PF01588 Putative tRNA binding domain HF295_00230 PF04055 Radical SAM superfamily HF295_00235 PF00365 Phosphofructokinase HF295_00240 PF02915 Rubrerythrin HF295_00245 PF03193 RsgA GTPase HF295_00245 PF16745 RsgA N-terminal domain HF295_00250 PF00834 Ribulose-phosphate 3 epimerase family HF295_00260 PF13180 PDZ domain HF295_00265 PF13180 PDZ domain HF295_00270 PF01042 Endoribonuclease L-PSP HF295_00275 PF00830 Ribosomal L28 family HF295_00280 PF02734 DAK2 domain HF295_00280 PF13684 Dihydroxyacetone kinase family HF295_00285 PF17191 RecG wedge domain HF295_00285 PF00271 Helicase conserved C-terminal domain HF295_00285 PF00270 DEAD/DEAH box helicase HF295_00290 PF02504 Fatty acid synthesis protein HF295_00295 PF00035 Double-stranded RNA binding motif HF295_00295 PF14622 Ribonuclease-III-like HF295_00305 PF00633 Helix-hairpin-helix motif HF295_00305 PF00730 HhH-GPD superfamily base excision DNA repair protein HF295_00305 PF10576 Iron-sulfur binding domain of endonuclease III HF295_00315 PF10609 NUBPL iron-transfer P-loop NTPase HF295_00325 PF01783 Ribosomal L32p protein family HF295_00330 PF01795 MraW methylase family HF295_00350 PF02384 N-6 DNA Methylase HF295_00350 PF12161 HsdM N-terminal domain HF295_00360 PF18766 SWI2/SNF2 ATPase HF295_00360 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HF295_00360 PF12008 Type I restriction and modification enzyme - subunit R C terminal HF295_00500 PF04542 Sigma-70 region 2 HF295_00500 PF08281 Sigma-70, region 4 HF295_00510 PF13333 Integrase core domain HF295_00510 PF00665 Integrase core domain HF295_00510 PF13276 HTH-like domain HF295_00515 PF13635 Domain of unknown function (DUF4143) HF295_00515 PF13173 AAA domain HF295_00530 PF00924 Mechanosensitive ion channel HF295_00535 PF00005 ABC transporter HF295_00540 PF12704 MacB-like periplasmic core domain HF295_00540 PF02687 FtsX-like permease family HF295_00550 PF01336 OB-fold nucleic acid binding domain HF295_00550 PF00152 tRNA synthetases class II (D, K and N) HF295_00555 PF00849 RNA pseudouridylate synthase HF295_00560 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HF295_00560 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HF295_00565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF295_00565 PF09180 Prolyl-tRNA synthetase, C-terminal HF295_00565 PF03129 Anticodon binding domain HF295_00580 PF02645 Uncharacterised protein, DegV family COG1307 HF295_00585 PF00005 ABC transporter HF295_00585 PF00664 ABC transporter transmembrane region HF295_00590 PF00005 ABC transporter HF295_00590 PF00664 ABC transporter transmembrane region HF295_00600 PF00005 ABC transporter HF295_00600 PF00664 ABC transporter transmembrane region HF295_00605 PF00664 ABC transporter transmembrane region HF295_00605 PF00005 ABC transporter HF295_00610 PF18693 TRAM domain HF295_00610 PF04055 Radical SAM superfamily HF295_00610 PF00919 Uncharacterized protein family UPF0004 HF295_00620 PF01546 Peptidase family M20/M25/M40 HF295_00620 PF07687 Peptidase dimerisation domain HF295_00625 PF01979 Amidohydrolase family HF295_00630 PF00719 Inorganic pyrophosphatase HF295_00640 PF00381 PTS HPr component phosphorylation site HF295_00650 PF00579 tRNA synthetases class I (W and Y) HF295_00655 PF01432 Peptidase family M3 HF295_00655 PF08439 Oligopeptidase F HF295_00660 PF03960 ArsC family HF295_00665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HF295_00665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HF295_00675 PF05195 Aminopeptidase P, N-terminal domain HF295_00675 PF00557 Metallopeptidase family M24 HF295_00680 PF14490 Helix-hairpin-helix containing domain HF295_00680 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HF295_00680 PF13538 UvrD-like helicase C-terminal domain HF295_00685 PF01411 tRNA synthetases class II (A) HF295_00685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HF295_00685 PF02272 DHHA1 domain HF295_00690 PF03652 Holliday junction resolvase HF295_00695 PF06949 Protein of unknown function (DUF1292) HF295_00700 PF01596 O-methyltransferase HF295_00715 PF03449 Transcription elongation factor, N-terminal HF295_00715 PF01272 Transcription elongation factor, GreA/GreB, C-term HF295_00720 PF01048 Phosphorylase superfamily HF295_00735 PF01926 50S ribosome-binding GTPase HF295_00740 PF01966 HD domain HF295_00750 PF13649 Methyltransferase domain HF295_00755 PF10531 SLBB domain HF295_00760 PF00753 Metallo-beta-lactamase superfamily HF295_00760 PF13567 Domain of unknown function (DUF4131) HF295_00760 PF03772 Competence protein HF295_00770 PF01649 Ribosomal protein S20 HF295_00780 PF02887 Pyruvate kinase, alpha/beta domain HF295_00780 PF00391 PEP-utilising enzyme, mobile domain HF295_00780 PF00224 Pyruvate kinase, barrel domain HF295_00800 PF00005 ABC transporter HF295_00800 PF16326 ABC transporter C-terminal domain HF295_00800 PF12848 ABC transporter HF295_00805 PF03485 Arginyl tRNA synthetase N terminal domain HF295_00805 PF05746 DALR anticodon binding domain HF295_00805 PF00750 tRNA synthetases class I (R) HF295_00810 PF00664 ABC transporter transmembrane region HF295_00810 PF00005 ABC transporter HF295_00815 PF00005 ABC transporter HF295_00815 PF00664 ABC transporter transmembrane region HF295_00820 PF07969 Amidohydrolase family HF295_00830 PF00795 Carbon-nitrogen hydrolase HF295_00845 PF04304 Protein of unknown function (DUF454) HF295_00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_00855 PF00528 Binding-protein-dependent transport system inner membrane component HF295_00860 PF00171 Aldehyde dehydrogenase family HF295_00885 PF01545 Cation efflux family HF295_00900 PF00501 AMP-binding enzyme HF295_00900 PF13193 AMP-binding enzyme C-terminal domain HF295_00915 PF12804 MobA-like NTP transferase domain HF295_00925 PF00111 2Fe-2S iron-sulfur cluster binding domain HF295_00925 PF01799 [2Fe-2S] binding domain HF295_00930 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HF295_00930 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HF295_00930 PF01799 [2Fe-2S] binding domain HF295_00940 PF02625 XdhC and CoxI family HF295_00940 PF13478 XdhC Rossmann domain HF295_00950 PF01979 Amidohydrolase family HF295_00955 PF01979 Amidohydrolase family HF295_00960 PF01180 Dihydroorotate dehydrogenase HF295_00965 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HF295_00965 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HF295_00970 PF00111 2Fe-2S iron-sulfur cluster binding domain HF295_00970 PF01799 [2Fe-2S] binding domain HF295_00980 PF01979 Amidohydrolase family HF295_00980 PF13382 Adenine deaminase C-terminal domain HF295_00985 PF00291 Pyridoxal-phosphate dependent enzyme HF295_00990 PF00291 Pyridoxal-phosphate dependent enzyme HF295_00995 PF07687 Peptidase dimerisation domain HF295_00995 PF01546 Peptidase family M20/M25/M40 HF295_01000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HF295_01000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HF295_01010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HF295_01020 PF03099 Biotin/lipoate A/B protein ligase family HF295_01020 PF10437 Bacterial lipoate protein ligase C-terminus HF295_01025 PF01571 Aminomethyltransferase folate-binding domain HF295_01025 PF08669 Glycine cleavage T-protein C-terminal barrel domain HF295_01030 PF01597 Glycine cleavage H-protein HF295_01035 PF02347 Glycine cleavage system P-protein HF295_01040 PF02347 Glycine cleavage system P-protein HF295_01055 PF04551 GcpE protein HF295_01060 PF01063 Amino-transferase class IV HF295_01065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HF295_01065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HF295_01075 PF00266 Aminotransferase class-V HF295_01080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HF295_01080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HF295_01085 PF00471 Ribosomal protein L33 HF295_01090 PF00753 Metallo-beta-lactamase superfamily HF295_01095 PF00072 Response regulator receiver domain HF295_01100 PF00248 Aldo/keto reductase family HF295_01115 PF02018 Carbohydrate binding domain HF295_01115 PF02927 Cellulase N-terminal ig-like domain HF295_01115 PF00759 Glycosyl hydrolase family 9 HF295_01115 PF07679 Immunoglobulin I-set domain HF295_01130 PF00528 Binding-protein-dependent transport system inner membrane component HF295_01135 PF00528 Binding-protein-dependent transport system inner membrane component HF295_01150 PF00528 Binding-protein-dependent transport system inner membrane component HF295_01155 PF00528 Binding-protein-dependent transport system inner membrane component HF295_01160 PF00722 Glycosyl hydrolases family 16 HF295_01165 PF00356 Bacterial regulatory proteins, lacI family HF295_01170 PF00722 Glycosyl hydrolases family 16 HF295_01175 PF01915 Glycosyl hydrolase family 3 C-terminal domain HF295_01175 PF00933 Glycosyl hydrolase family 3 N terminal domain HF295_01175 PF14310 Fibronectin type III-like domain HF295_01180 PF13556 PucR C-terminal helix-turn-helix domain HF295_01185 PF00005 ABC transporter HF295_01185 PF17912 MalK OB fold domain HF295_01185 PF03459 TOBE domain HF295_01210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HF295_01210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HF295_01215 PF00356 Bacterial regulatory proteins, lacI family HF295_01225 PF00005 ABC transporter HF295_01230 PF02653 Branched-chain amino acid transport system / permease component HF295_01235 PF01628 HrcA protein C terminal domain HF295_01240 PF01025 GrpE HF295_01245 PF00012 Hsp70 protein HF295_01250 PF00226 DnaJ domain HF295_01250 PF01556 DnaJ C terminal domain HF295_01250 PF00684 DnaJ central domain HF295_01280 PF04055 Radical SAM superfamily HF295_01280 PF01938 TRAM domain HF295_01280 PF00919 Uncharacterized protein family UPF0004 HF295_01290 PF01165 Ribosomal protein S21 HF295_01295 PF02562 PhoH-like protein HF295_01300 PF02130 Uncharacterized protein family UPF0054 HF295_01305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HF295_01310 PF01926 50S ribosome-binding GTPase HF295_01310 PF07650 KH domain HF295_01315 PF11967 Recombination protein O N terminal HF295_01315 PF02565 Recombination protein O C terminal HF295_01320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF295_01320 PF03129 Anticodon binding domain HF295_01325 PF10410 DnaB-helicase binding domain of primase HF295_01325 PF08275 DNA primase catalytic core, N-terminal domain HF295_01325 PF01807 CHC2 zinc finger HF295_01330 PF00140 Sigma-70 factor, region 1.2 HF295_01330 PF04545 Sigma-70, region 4 HF295_01330 PF03979 Sigma-70 factor, region 1.1 HF295_01330 PF04542 Sigma-70 region 2 HF295_01330 PF04539 Sigma-70 region 3 HF295_01335 PF04545 Sigma-70, region 4 HF295_01335 PF04542 Sigma-70 region 2 HF295_01335 PF00140 Sigma-70 factor, region 1.2 HF295_01335 PF03979 Sigma-70 factor, region 1.1 HF295_01335 PF04539 Sigma-70 region 3 HF295_01345 PF01784 NIF3 (NGG1p interacting factor 3) HF295_01350 PF02645 Uncharacterised protein, DegV family COG1307 HF295_01355 PF01047 MarR family HF295_01360 PF12838 4Fe-4S dicluster domain HF295_01365 PF03672 Uncharacterised protein family (UPF0154) HF295_01370 PF02660 Glycerol-3-phosphate acyltransferase HF295_01375 PF01751 Toprim domain HF295_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF295_01375 PF00986 DNA gyrase B subunit, carboxyl terminus HF295_01375 PF00204 DNA gyrase B HF295_01380 PF00521 DNA gyrase/topoisomerase IV, subunit A HF295_01380 PF03989 DNA gyrase C-terminal domain, beta-propeller HF295_01395 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HF295_01395 PF02272 DHHA1 domain HF295_01395 PF01368 DHH family HF295_01395 PF17768 RecJ OB domain HF295_01400 PF00156 Phosphoribosyl transferase domain HF295_01405 PF02824 TGS domain HF295_01405 PF04607 Region found in RelA / SpoT proteins HF295_01405 PF13291 ACT domain HF295_01410 PF02580 D-Tyr-tRNA(Tyr) deacylase HF295_01415 PF00550 Phosphopantetheine attachment site HF295_01420 PF03129 Anticodon binding domain HF295_01420 PF13393 Histidyl-tRNA synthetase HF295_01425 PF01594 AI-2E family transporter HF295_01435 PF00899 ThiF family HF295_01440 PF01625 Peptide methionine sulfoxide reductase HF295_01445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HF295_01450 PF05362 Lon protease (S16) C-terminal proteolytic domain HF295_01450 PF13180 PDZ domain HF295_01475 PF01252 Signal peptidase (SPase) II HF295_01480 PF01479 S4 domain HF295_01480 PF00849 RNA pseudouridylate synthase HF295_01485 PF11858 Domain of unknown function (DUF3378) HF295_01485 PF01351 Ribonuclease HII HF295_01490 PF01713 Smr domain HF295_01490 PF00488 MutS domain V HF295_01495 PF16198 tRNA pseudouridylate synthase B C-terminal domain HF295_01495 PF01509 TruB family pseudouridylate synthase (N terminal domain) HF295_01500 PF06574 FAD synthetase HF295_01500 PF01687 Riboflavin kinase HF295_01510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF295_01510 PF05697 Bacterial trigger factor protein (TF) HF295_01510 PF05698 Bacterial trigger factor protein (TF) C-terminus HF295_01515 PF00004 ATPase family associated with various cellular activities (AAA) HF295_01515 PF05362 Lon protease (S16) C-terminal proteolytic domain HF295_01515 PF02190 ATP-dependent protease La (LON) substrate-binding domain HF295_01525 PF00293 NUDIX domain HF295_01535 PF00312 Ribosomal protein S15 HF295_01540 PF03725 3' exoribonuclease family, domain 2 HF295_01540 PF01138 3' exoribonuclease family, domain 1 HF295_01540 PF00575 S1 RNA binding domain HF295_01540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HF295_01550 PF06421 GTP-binding protein LepA C-terminus HF295_01550 PF00009 Elongation factor Tu GTP binding domain HF295_01550 PF00679 Elongation factor G C-terminus HF295_01550 PF03144 Elongation factor Tu domain 2 HF295_01555 PF04055 Radical SAM superfamily HF295_01555 PF06969 HemN C-terminal domain HF295_01560 PF00589 Phage integrase family HF295_01560 PF02899 Phage integrase, N-terminal SAM-like domain HF295_01565 PF01676 Metalloenzyme superfamily HF295_01580 PF05496 Holliday junction DNA helicase RuvB P-loop domain HF295_01580 PF17864 RuvB AAA lid domain HF295_01580 PF05491 RuvB C-terminal winged helix domain HF295_01585 PF02547 Queuosine biosynthesis protein HF295_01590 PF02592 Putative vitamin uptake transporter HF295_01595 PF06130 Phosphate propanoyltransferase HF295_01600 PF01702 Queuine tRNA-ribosyltransferase HF295_01605 PF12327 FtsZ family, C-terminal domain HF295_01605 PF00091 Tubulin/FtsZ family, GTPase domain HF295_01610 PF03448 MgtE intracellular N domain HF295_01610 PF01769 Divalent cation transporter HF295_01610 PF00571 CBS domain HF295_01615 PF01769 Divalent cation transporter HF295_01615 PF03448 MgtE intracellular N domain HF295_01615 PF00571 CBS domain HF295_01625 PF01975 Survival protein SurE HF295_01635 PF01168 Alanine racemase, N-terminal domain HF295_01640 PF04472 Cell division protein SepF HF295_01650 PF00133 tRNA synthetases class I (I, L, M and V) HF295_01650 PF08264 Anticodon-binding domain of tRNA HF295_01650 PF06827 Zinc finger found in FPG and IleRS HF295_01655 PF01791 DeoC/LacD family aldolase HF295_01665 PF01048 Phosphorylase superfamily HF295_01675 PF00675 Insulinase (Peptidase family M16) HF295_01675 PF05193 Peptidase M16 inactive domain HF295_01680 PF01926 50S ribosome-binding GTPase HF295_01690 PF13344 Haloacid dehalogenase-like hydrolase HF295_01690 PF00293 NUDIX domain HF295_01695 PF10458 Valyl tRNA synthetase tRNA binding arm HF295_01695 PF08264 Anticodon-binding domain of tRNA HF295_01695 PF00133 tRNA synthetases class I (I, L, M and V) HF295_01700 PF08245 Mur ligase middle domain HF295_01700 PF02875 Mur ligase family, glutamate ligase domain HF295_01705 PF04002 RadC-like JAB domain HF295_01705 PF12826 Helix-hairpin-helix motif HF295_01740 PF00436 Single-strand binding protein family HF295_01745 PF00303 Thymidylate synthase HF295_01750 PF00186 Dihydrofolate reductase HF295_01755 PF01553 Acyltransferase HF295_01760 PF02417 Chromate transporter HF295_01785 PF13180 PDZ domain HF295_01800 PF00149 Calcineurin-like phosphoesterase HF295_01800 PF02872 5'-nucleotidase, C-terminal domain HF295_01805 PF13188 PAS domain HF295_01805 PF00990 Diguanylate cyclase, GGDEF domain HF295_01805 PF03707 Bacterial signalling protein N terminal repeat HF295_01805 PF00563 EAL domain HF295_01810 PF00300 Histidine phosphatase superfamily (branch 1) HF295_01815 PF02885 Glycosyl transferase family, helical bundle domain HF295_01815 PF00591 Glycosyl transferase family, a/b domain HF295_01815 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HF295_01825 PF00183 Hsp90 protein HF295_01835 PF03951 Glutamine synthetase, beta-Grasp domain HF295_01835 PF00120 Glutamine synthetase, catalytic domain HF295_01840 PF03838 Recombination protein U HF295_01845 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HF295_01845 PF17770 Ribonuclease J C-terminal domain HF295_01845 PF00753 Metallo-beta-lactamase superfamily HF295_01850 PF00512 His Kinase A (phospho-acceptor) domain HF295_01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF295_01850 PF09456 RcsC Alpha-Beta-Loop (ABL) HF295_01850 PF00072 Response regulator receiver domain HF295_01855 PF00535 Glycosyl transferase family 2 HF295_01865 PF16193 AAA C-terminal domain HF295_01865 PF05496 Holliday junction DNA helicase RuvB P-loop domain HF295_01865 PF12002 MgsA AAA+ ATPase C terminal HF295_01875 PF00710 Asparaginase, N-terminal HF295_01875 PF17763 Glutaminase/Asparaginase C-terminal domain HF295_01880 PF07499 RuvA, C-terminal domain HF295_01880 PF01330 RuvA N terminal domain HF295_01885 PF01018 GTP1/OBG HF295_01885 PF09269 Domain of unknown function (DUF1967) HF295_01885 PF01926 50S ribosome-binding GTPase HF295_01900 PF01016 Ribosomal L27 protein HF295_01905 PF00829 Ribosomal prokaryotic L21 protein HF295_01915 PF00403 Heavy-metal-associated domain HF295_01920 PF00128 Alpha amylase, catalytic domain HF295_01920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HF295_01920 PF03714 Bacterial pullanase-associated domain HF295_01925 PF00128 Alpha amylase, catalytic domain HF295_01925 PF11941 Domain of unknown function (DUF3459) HF295_01930 PF00528 Binding-protein-dependent transport system inner membrane component HF295_01935 PF00528 Binding-protein-dependent transport system inner membrane component HF295_01945 PF00128 Alpha amylase, catalytic domain HF295_01945 PF16657 Maltogenic Amylase, C-terminal domain HF295_01965 PF01467 Cytidylyltransferase-like HF295_01980 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HF295_01980 PF02896 PEP-utilising enzyme, TIM barrel domain HF295_01980 PF00391 PEP-utilising enzyme, mobile domain HF295_01990 PF00005 ABC transporter HF295_02000 PF03009 Glycerophosphoryl diester phosphodiesterase family HF295_02005 PF00132 Bacterial transferase hexapeptide (six repeats) HF295_02005 PF00483 Nucleotidyl transferase HF295_02010 PF08323 Starch synthase catalytic domain HF295_02010 PF00534 Glycosyl transferases group 1 HF295_02020 PF00485 Phosphoribulokinase / Uridine kinase family HF295_02045 PF12679 ABC-2 family transporter protein HF295_02050 PF00005 ABC transporter HF295_02055 PF00453 Ribosomal protein L20 HF295_02060 PF01632 Ribosomal protein L35 HF295_02065 PF00707 Translation initiation factor IF-3, C-terminal domain HF295_02065 PF05198 Translation initiation factor IF-3, N-terminal domain HF295_02070 PF00483 Nucleotidyl transferase HF295_02070 PF00132 Bacterial transferase hexapeptide (six repeats) HF295_02075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HF295_02075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HF295_02075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HF295_02075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HF295_02080 PF01380 SIS domain HF295_02090 PF00005 ABC transporter HF295_02110 PF00403 Heavy-metal-associated domain HF295_02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF295_02115 PF00512 His Kinase A (phospho-acceptor) domain HF295_02115 PF00989 PAS fold HF295_02115 PF00672 HAMP domain HF295_02120 PF00486 Transcriptional regulatory protein, C terminal HF295_02120 PF00072 Response regulator receiver domain HF295_02140 PF00665 Integrase core domain HF295_02140 PF13333 Integrase core domain HF295_02140 PF13276 HTH-like domain HF295_02160 PF00795 Carbon-nitrogen hydrolase HF295_02160 PF02540 NAD synthase HF295_02165 PF01467 Cytidylyltransferase-like HF295_02170 PF05343 M42 glutamyl aminopeptidase HF295_02175 PF00849 RNA pseudouridylate synthase HF295_02180 PF04167 Protein of unknown function (DUF402) HF295_02185 PF00588 SpoU rRNA Methylase family HF295_02190 PF00270 DEAD/DEAH box helicase HF295_02190 PF00271 Helicase conserved C-terminal domain HF295_02195 PF02401 LytB protein HF295_02205 PF13476 AAA domain HF295_02210 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HF295_02210 PF02779 Transketolase, pyrimidine binding domain HF295_02210 PF02780 Transketolase, C-terminal domain HF295_02215 PF02609 Exonuclease VII small subunit HF295_02220 PF02601 Exonuclease VII, large subunit HF295_02220 PF13742 OB-fold nucleic acid binding domain HF295_02225 PF01029 NusB family HF295_02240 PF01725 Ham1 family HF295_02245 PF02080 TrkA-C domain HF295_02245 PF02254 TrkA-N domain HF295_02255 PF16736 Single Cache-like HF295_02255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF295_02255 PF00512 His Kinase A (phospho-acceptor) domain HF295_02255 PF00989 PAS fold HF295_02260 PF00072 Response regulator receiver domain HF295_02260 PF00486 Transcriptional regulatory protein, C terminal HF295_02265 PF01895 PhoU domain HF295_02270 PF00005 ABC transporter HF295_02275 PF00528 Binding-protein-dependent transport system inner membrane component HF295_02280 PF00528 Binding-protein-dependent transport system inner membrane component HF295_02290 PF00216 Bacterial DNA-binding protein HF295_02295 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HF295_02295 PF01926 50S ribosome-binding GTPase HF295_02300 PF00575 S1 RNA binding domain HF295_02305 PF02224 Cytidylate kinase HF295_02310 PF01479 S4 domain HF295_02310 PF00849 RNA pseudouridylate synthase HF295_02315 PF00571 CBS domain HF295_02315 PF01595 Cyclin M transmembrane N-terminal domain HF295_02320 PF01132 Elongation factor P (EF-P) OB domain HF295_02320 PF08207 Elongation factor P (EF-P) KOW-like domain HF295_02320 PF09285 Elongation factor P, C-terminal HF295_02335 PF08676 MutL C terminal dimerisation domain HF295_02335 PF01119 DNA mismatch repair protein, C-terminal domain HF295_02340 PF05192 MutS domain III HF295_02340 PF05190 MutS family domain IV HF295_02340 PF05188 MutS domain II HF295_02340 PF01624 MutS domain I HF295_02340 PF00488 MutS domain V HF295_02350 PF00919 Uncharacterized protein family UPF0004 HF295_02350 PF01938 TRAM domain HF295_02350 PF04055 Radical SAM superfamily HF295_02355 PF13277 YmdB-like protein HF295_02365 PF00013 KH domain HF295_02365 PF01966 HD domain HF295_02365 PF12072 Domain of unknown function (DUF3552) HF295_02370 PF00154 recA bacterial DNA recombination protein HF295_02375 PF01066 CDP-alcohol phosphatidyltransferase HF295_02380 PF01709 Transcriptional regulator HF295_02385 PF17783 CvfB-like winged helix domain HF295_02385 PF13509 S1 domain HF295_02395 PF01546 Peptidase family M20/M25/M40 HF295_02395 PF07687 Peptidase dimerisation domain HF295_02420 PF13361 UvrD-like helicase C-terminal domain HF295_02420 PF00580 UvrD/REP helicase N-terminal domain HF295_02420 PF12705 PD-(D/E)XK nuclease superfamily HF295_02440 PF00291 Pyridoxal-phosphate dependent enzyme HF295_02445 PF00132 Bacterial transferase hexapeptide (six repeats) HF295_02455 PF00266 Aminotransferase class-V HF295_02465 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_02465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF295_02470 PF02861 Clp amino terminal domain, pathogenicity island component HF295_02470 PF10431 C-terminal, D2-small domain, of ClpB protein HF295_02470 PF07724 AAA domain (Cdc48 subfamily) HF295_02470 PF00004 ATPase family associated with various cellular activities (AAA) HF295_02470 PF17871 AAA lid domain HF295_02475 PF08447 PAS fold HF295_02475 PF08448 PAS fold HF295_02475 PF00563 EAL domain HF295_02475 PF00990 Diguanylate cyclase, GGDEF domain HF295_02480 PF01590 GAF domain HF295_02480 PF00990 Diguanylate cyclase, GGDEF domain HF295_02480 PF00360 Phytochrome region HF295_02480 PF00563 EAL domain HF295_02485 PF01741 Large-conductance mechanosensitive channel, MscL HF295_02490 PF00301 Rubredoxin HF295_02505 PF08281 Sigma-70, region 4 HF295_02505 PF04542 Sigma-70 region 2 HF295_02530 PF11188 Protein of unknown function (DUF2975) HF295_02535 PF08818 Domain of unknown function (DU1801) HF295_02550 PF13195 Protein of unknown function (DUF4011) HF295_02550 PF13087 AAA domain HF295_02550 PF13086 AAA domain HF295_02555 PF02645 Uncharacterised protein, DegV family COG1307 HF295_02585 PF13333 Integrase core domain HF295_02585 PF00665 Integrase core domain HF295_02585 PF13276 HTH-like domain HF295_02590 PF13276 HTH-like domain HF295_02590 PF00665 Integrase core domain HF295_02590 PF13333 Integrase core domain HF295_02600 PF13007 Transposase C of IS166 homeodomain HF295_02600 PF13005 zinc-finger binding domain of transposase IS66 HF295_02600 PF03050 Transposase IS66 family HF295_02600 PF13817 IS66 C-terminal element HF295_02665 PF02350 UDP-N-acetylglucosamine 2-epimerase HF295_02670 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HF295_02670 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HF295_02670 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HF295_02695 PF13439 Glycosyltransferase Family 4 HF295_02695 PF00534 Glycosyl transferases group 1 HF295_02710 PF01370 NAD dependent epimerase/dehydratase family HF295_02715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HF295_02715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HF295_02715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HF295_02720 PF00535 Glycosyl transferase family 2 HF295_02725 PF02397 Bacterial sugar transferase HF295_02730 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HF295_02750 PF02899 Phage integrase, N-terminal SAM-like domain HF295_02750 PF00589 Phage integrase family HF295_02765 PF02796 Helix-turn-helix domain of resolvase HF295_02765 PF00239 Resolvase, N terminal domain HF295_02850 PF13542 Helix-turn-helix domain of transposase family ISL3 HF295_02850 PF01610 Transposase HF295_02850 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HF295_02860 PF04231 Endonuclease I HF295_02920 PF00485 Phosphoribulokinase / Uridine kinase family HF295_02925 PF01032 FecCD transport family HF295_02930 PF01032 FecCD transport family HF295_02935 PF01497 Periplasmic binding protein HF295_02940 PF00005 ABC transporter HF295_02955 PF00924 Mechanosensitive ion channel HF295_02965 PF12848 ABC transporter HF295_02965 PF16326 ABC transporter C-terminal domain HF295_02965 PF00005 ABC transporter HF295_02975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF295_02975 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_02980 PF00682 HMGL-like HF295_02980 PF00364 Biotin-requiring enzyme HF295_02980 PF02436 Conserved carboxylase domain HF295_02990 PF02785 Biotin carboxylase C-terminal domain HF295_02990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF295_02990 PF00364 Biotin-requiring enzyme HF295_02990 PF00289 Biotin carboxylase, N-terminal domain HF295_02995 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HF295_03000 PF02237 Biotin protein ligase C terminal domain HF295_03000 PF08279 HTH domain HF295_03000 PF03099 Biotin/lipoate A/B protein ligase family HF295_03015 PF00950 ABC 3 transport family HF295_03020 PF00005 ABC transporter HF295_03025 PF01297 Zinc-uptake complex component A periplasmic HF295_03055 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF295_03060 PF00528 Binding-protein-dependent transport system inner membrane component HF295_03065 PF00005 ABC transporter HF295_03075 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) HF295_03075 PF07581 The GLUG motif HF295_03080 PF00563 EAL domain HF295_03080 PF13426 PAS domain HF295_03080 PF00990 Diguanylate cyclase, GGDEF domain HF295_03090 PF00871 Acetokinase family HF295_03095 PF01515 Phosphate acetyl/butaryl transferase HF295_03125 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HF295_03125 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HF295_03130 PF04231 Endonuclease I HF295_03145 PF10688 Bacterial inner membrane protein HF295_03155 PF00860 Permease family HF295_03165 PF02566 OsmC-like protein HF295_03170 PF00171 Aldehyde dehydrogenase family HF295_03175 PF01266 FAD dependent oxidoreductase HF295_03180 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_03180 PF04324 BFD-like [2Fe-2S] binding domain HF295_03190 PF17806 Sarcosine oxidase A3 domain HF295_03190 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_03190 PF08669 Glycine cleavage T-protein C-terminal barrel domain HF295_03190 PF01571 Aminomethyltransferase folate-binding domain HF295_03200 PF00392 Bacterial regulatory proteins, gntR family HF295_03200 PF00155 Aminotransferase class I and II HF295_03205 PF01680 SOR/SNZ family HF295_03210 PF01174 SNO glutamine amidotransferase family HF295_03215 PF01168 Alanine racemase, N-terminal domain HF295_03215 PF00842 Alanine racemase, C-terminal domain HF295_03220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF295_03220 PF02403 Seryl-tRNA synthetase N-terminal domain HF295_03225 PF01554 MatE HF295_03240 PF00365 Phosphofructokinase HF295_03250 PF00155 Aminotransferase class I and II HF295_03255 PF08240 Alcohol dehydrogenase GroES-like domain HF295_03255 PF00107 Zinc-binding dehydrogenase HF295_03270 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HF295_03275 PF00884 Sulfatase HF295_03280 PF01425 Amidase HF295_03285 PF00132 Bacterial transferase hexapeptide (six repeats) HF295_03290 PF01256 Carbohydrate kinase HF295_03290 PF03853 YjeF-related protein N-terminus HF295_03295 PF06874 Firmicute fructose-1,6-bisphosphatase HF295_03310 PF00005 ABC transporter HF295_03310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HF295_03315 PF00005 ABC transporter HF295_03315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HF295_03325 PF12911 N-terminal TM domain of oligopeptide transport permease C HF295_03325 PF00528 Binding-protein-dependent transport system inner membrane component HF295_03330 PF00528 Binding-protein-dependent transport system inner membrane component HF295_03345 PF13649 Methyltransferase domain HF295_03355 PF03030 Inorganic H+ pyrophosphatase HF295_03365 PF00210 Ferritin-like domain HF295_03400 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HF295_03400 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HF295_03400 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain HF295_03410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HF295_03410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HF295_03415 PF03006 Haemolysin-III related HF295_03425 PF02502 Ribose/Galactose Isomerase HF295_03435 PF00005 ABC transporter HF295_03440 PF00528 Binding-protein-dependent transport system inner membrane component HF295_03445 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF295_03450 PF08331 Domain of unknown function (DUF1730) HF295_03465 PF03951 Glutamine synthetase, beta-Grasp domain HF295_03465 PF00120 Glutamine synthetase, catalytic domain HF295_03485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HF295_03485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HF295_03500 PF04286 Protein of unknown function (DUF445) HF295_03505 PF03372 Endonuclease/Exonuclease/phosphatase family HF295_03510 PF07556 Protein of unknown function (DUF1538) HF295_03540 PF13649 Methyltransferase domain HF295_03580 PF01381 Helix-turn-helix HF295_03590 PF13649 Methyltransferase domain HF295_03600 PF13333 Integrase core domain HF295_03600 PF00665 Integrase core domain HF295_03600 PF13276 HTH-like domain HF295_03630 PF02629 CoA binding domain HF295_03630 PF06971 Putative DNA-binding protein N-terminus HF295_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF295_03635 PF03466 LysR substrate binding domain HF295_03640 PF01012 Electron transfer flavoprotein domain HF295_03640 PF00766 Electron transfer flavoprotein FAD-binding domain HF295_03645 PF01012 Electron transfer flavoprotein domain HF295_03650 PF02770 Acyl-CoA dehydrogenase, middle domain HF295_03650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF295_03650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF295_03660 PF00842 Alanine racemase, C-terminal domain HF295_03660 PF01168 Alanine racemase, N-terminal domain HF295_03665 PF00842 Alanine racemase, C-terminal domain HF295_03665 PF01168 Alanine racemase, N-terminal domain HF295_03685 PF13630 SdpI/YhfL protein family HF295_03700 PF00403 Heavy-metal-associated domain HF295_03705 PF01022 Bacterial regulatory protein, arsR family HF295_03715 PF01668 SmpB protein HF295_03720 PF00575 S1 RNA binding domain HF295_03720 PF00773 RNB domain HF295_03720 PF17876 Cold shock domain HF295_03720 PF08206 Ribonuclease B OB domain HF295_03730 PF03952 Enolase, N-terminal domain HF295_03730 PF00113 Enolase, C-terminal TIM barrel domain HF295_03740 PF01676 Metalloenzyme superfamily HF295_03740 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HF295_03745 PF00128 Alpha amylase, catalytic domain HF295_03745 PF11896 Domain of unknown function (DUF3416) HF295_03755 PF03167 Uracil DNA glycosylase superfamily HF295_03765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HF295_03765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HF295_03765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HF295_03765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HF295_03770 PF00881 Nitroreductase family HF295_03785 PF12822 ECF transporter, substrate-specific component HF295_03795 PF00343 Carbohydrate phosphorylase HF295_03800 PF08323 Starch synthase catalytic domain HF295_03800 PF00534 Glycosyl transferases group 1 HF295_03805 PF00483 Nucleotidyl transferase HF295_03810 PF02806 Alpha amylase, C-terminal all-beta domain HF295_03810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HF295_03810 PF00128 Alpha amylase, catalytic domain HF295_03815 PF02631 RecX family HF295_03820 PF00472 RF-1 domain HF295_03820 PF03462 PCRF domain HF295_03825 PF02810 SEC-C motif HF295_03825 PF07517 SecA DEAD-like domain HF295_03825 PF07516 SecA Wing and Scaffold domain HF295_03825 PF01043 SecA preprotein cross-linking domain HF295_03830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HF295_03830 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HF295_03840 PF04851 Type III restriction enzyme, res subunit HF295_03840 PF00271 Helicase conserved C-terminal domain HF295_03845 PF09334 tRNA synthetases class I (M) HF295_03845 PF08264 Anticodon-binding domain of tRNA HF295_03845 PF13603 Leucyl-tRNA synthetase, Domain 2 HF295_03845 PF00133 tRNA synthetases class I (I, L, M and V) HF295_03855 PF04055 Radical SAM superfamily HF295_03855 PF16199 Radical_SAM C-terminal domain HF295_03860 PF00892 EamA-like transporter family HF295_03875 PF00438 S-adenosylmethionine synthetase, N-terminal domain HF295_03875 PF02772 S-adenosylmethionine synthetase, central domain HF295_03875 PF02773 S-adenosylmethionine synthetase, C-terminal domain HF295_03885 PF04608 Phosphatidylglycerophosphatase A HF295_03890 PF00551 Formyl transferase HF295_03890 PF02911 Formyl transferase, C-terminal domain HF295_03895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HF295_03895 PF04851 Type III restriction enzyme, res subunit HF295_03895 PF18074 Primosomal protein N C-terminal domain HF295_03895 PF17764 3′ DNA-binding domain (3′BD) HF295_03895 PF00271 Helicase conserved C-terminal domain HF295_03900 PF17770 Ribonuclease J C-terminal domain HF295_03900 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HF295_03900 PF00753 Metallo-beta-lactamase superfamily HF295_03905 PF00929 Exonuclease HF295_03910 PF02151 UvrB/uvrC motif HF295_03910 PF12826 Helix-hairpin-helix motif HF295_03910 PF08459 UvrC Helix-hairpin-helix N-terminal HF295_03910 PF01541 GIY-YIG catalytic domain HF295_03915 PF02033 Ribosome-binding factor A HF295_03920 PF04760 Translation initiation factor IF-2, N-terminal region HF295_03920 PF00009 Elongation factor Tu GTP binding domain HF295_03920 PF11987 Translation-initiation factor 2 HF295_03925 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family HF295_03930 PF04296 Protein of unknown function (DUF448) HF295_03935 PF00575 S1 RNA binding domain HF295_03935 PF13184 NusA-like KH domain HF295_03935 PF08529 NusA N-terminal domain HF295_03940 PF17384 RimP C-terminal SH3 domain HF295_03940 PF02576 RimP N-terminal domain HF295_03950 PF00588 SpoU rRNA Methylase family HF295_03950 PF08032 RNA 2'-O ribose methyltransferase substrate binding HF295_03970 PF02926 THUMP domain HF295_03970 PF02568 Thiamine biosynthesis protein (ThiI) HF295_03975 PF13185 GAF domain HF295_03980 PF01479 S4 domain HF295_03980 PF00163 Ribosomal protein S4/S9 N-terminal domain HF295_03985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF295_03985 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_03990 PF00121 Triosephosphate isomerase HF295_03995 PF00162 Phosphoglycerate kinase HF295_04005 PF06153 Cyclic-di-AMP receptor HF295_04020 PF01458 Uncharacterized protein family (UPF0051) HF295_04025 PF01592 NifU-like N terminal domain HF295_04030 PF00266 Aminotransferase class-V HF295_04035 PF01458 Uncharacterized protein family (UPF0051) HF295_04040 PF00005 ABC transporter HF295_04045 PF02308 MgtC family HF295_04050 PF16916 Dimerisation domain of Zinc Transporter HF295_04050 PF01545 Cation efflux family HF295_04060 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HF295_04060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HF295_04060 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HF295_04060 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HF295_04060 PF10371 Domain of unknown function HF295_04065 PF00753 Metallo-beta-lactamase superfamily HF295_04110 PF12697 Alpha/beta hydrolase family HF295_04115 PF00561 alpha/beta hydrolase fold HF295_04120 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HF295_04120 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HF295_04130 PF00005 ABC transporter HF295_04135 PF12399 Branched-chain amino acid ATP-binding cassette transporter HF295_04135 PF00005 ABC transporter HF295_04140 PF11862 Domain of unknown function (DUF3382) HF295_04140 PF02653 Branched-chain amino acid transport system / permease component HF295_04150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HF295_04150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HF295_04160 PF00108 Thiolase, N-terminal domain HF295_04160 PF02803 Thiolase, C-terminal domain HF295_04165 PF00440 Bacterial regulatory proteins, tetR family HF295_04170 PF00360 Phytochrome region HF295_04170 PF01590 GAF domain HF295_04170 PF00990 Diguanylate cyclase, GGDEF domain HF295_04170 PF00563 EAL domain HF295_04175 PF00990 Diguanylate cyclase, GGDEF domain HF295_04175 PF00563 EAL domain HF295_04175 PF00498 FHA domain HF295_04195 PF01966 HD domain HF295_04200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HF295_04200 PF17999 Pullulanase N1-terminal domain HF295_04200 PF00128 Alpha amylase, catalytic domain HF295_04205 PF12627 Probable RNA and SrmB- binding site of polymerase A HF295_04205 PF01743 Poly A polymerase head domain HF295_04205 PF13735 tRNA nucleotidyltransferase domain 2 putative HF295_04210 PF09186 Domain of unknown function (DUF1949) HF295_04210 PF01205 Uncharacterized protein family UPF0029 HF295_04240 PF03551 Transcriptional regulator PadR-like family HF295_04245 PF02645 Uncharacterised protein, DegV family COG1307 HF295_04265 PF00886 Ribosomal protein S16 HF295_04275 PF01327 Polypeptide deformylase HF295_04280 PF00753 Metallo-beta-lactamase superfamily HF295_04280 PF00258 Flavodoxin HF295_04285 PF02645 Uncharacterised protein, DegV family COG1307 HF295_04290 PF03051 Peptidase C1-like family HF295_04295 PF03051 Peptidase C1-like family HF295_04300 PF03051 Peptidase C1-like family HF295_04305 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HF295_04305 PF00175 Oxidoreductase NAD-binding domain HF295_04310 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_04310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HF295_04320 PF00005 ABC transporter HF295_04340 PF00155 Aminotransferase class I and II HF295_04345 PF08448 PAS fold HF295_04345 PF00990 Diguanylate cyclase, GGDEF domain HF295_04350 PF01544 CorA-like Mg2+ transporter protein HF295_04355 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HF295_04360 PF01569 PAP2 superfamily HF295_04365 PF00860 Permease family HF295_04370 PF01699 Sodium/calcium exchanger protein HF295_04380 PF12728 Helix-turn-helix domain HF295_04380 PF02661 Fic/DOC family HF295_04400 PF13173 AAA domain HF295_04400 PF13635 Domain of unknown function (DUF4143) HF295_04420 PF01300 Telomere recombination HF295_04420 PF03481 Putative GTP-binding controlling metal-binding HF295_04440 PF02661 Fic/DOC family HF295_04440 PF13784 Fic/DOC family N-terminal HF295_04625 PF01131 DNA topoisomerase HF295_04625 PF01751 Toprim domain HF295_04625 PF01396 Topoisomerase DNA binding C4 zinc finger HF295_04630 PF17782 DprA winged helix domain HF295_04630 PF02481 DNA recombination-mediator protein A HF295_04650 PF02773 S-adenosylmethionine synthetase, C-terminal domain HF295_04650 PF02772 S-adenosylmethionine synthetase, central domain HF295_04650 PF00438 S-adenosylmethionine synthetase, N-terminal domain HF295_04670 PF01555 DNA methylase HF295_04685 PF01555 DNA methylase HF295_04700 PF14297 Domain of unknown function (DUF4373) HF295_04700 PF07261 Replication initiation and membrane attachment HF295_04715 PF00589 Phage integrase family HF295_04715 PF02899 Phage integrase, N-terminal SAM-like domain HF295_04760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HF295_04770 PF02867 Ribonucleotide reductase, barrel domain HF295_04770 PF08471 Class II vitamin B12-dependent ribonucleotide reductase HF295_04775 PF00749 tRNA synthetases class I (E and Q), catalytic domain HF295_04780 PF03313 Serine dehydratase alpha chain HF295_04785 PF16491 CAAX prenyl protease N-terminal, five membrane helices HF295_04785 PF01435 Peptidase family M48 HF295_04790 PF00676 Dehydrogenase E1 component HF295_04795 PF02780 Transketolase, C-terminal domain HF295_04795 PF02779 Transketolase, pyrimidine binding domain HF295_04800 PF02817 e3 binding domain HF295_04800 PF00364 Biotin-requiring enzyme HF295_04800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HF295_04805 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_04810 PF10437 Bacterial lipoate protein ligase C-terminus HF295_04810 PF03099 Biotin/lipoate A/B protein ligase family HF295_04815 PF01554 MatE HF295_04820 PF00361 Proton-conducting membrane transporter HF295_04825 PF00361 Proton-conducting membrane transporter HF295_04830 PF00361 Proton-conducting membrane transporter HF295_04840 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HF295_04855 PF03334 Na+/H+ antiporter subunit HF295_04860 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HF295_04865 PF01899 Na+/H+ ion antiporter subunit HF295_04870 PF00465 Iron-containing alcohol dehydrogenase HF295_04875 PF03176 MMPL family HF295_04885 PF03883 Peroxide stress protein YaaA HF295_04890 PF00884 Sulfatase HF295_04895 PF01966 HD domain HF295_04905 PF00501 AMP-binding enzyme HF295_04905 PF01553 Acyltransferase HF295_04915 PF00990 Diguanylate cyclase, GGDEF domain HF295_04915 PF05230 MASE2 domain HF295_04940 PF13426 PAS domain HF295_04940 PF00990 Diguanylate cyclase, GGDEF domain HF295_04940 PF00563 EAL domain HF295_04955 PF13173 AAA domain HF295_04955 PF13635 Domain of unknown function (DUF4143) HF295_04985 PF13180 PDZ domain HF295_04985 PF02163 Peptidase family M50 HF295_04990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HF295_04990 PF13288 DXP reductoisomerase C-terminal domain HF295_04990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HF295_05000 PF01255 Putative undecaprenyl diphosphate synthase HF295_05005 PF01765 Ribosome recycling factor HF295_05010 PF00696 Amino acid kinase family HF295_05015 PF00889 Elongation factor TS HF295_05020 PF00318 Ribosomal protein S2 HF295_05025 PF00692 dUTPase HF295_05030 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HF295_05030 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HF295_05035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF295_05035 PF02874 ATP synthase alpha/beta family, beta-barrel domain HF295_05040 PF00231 ATP synthase HF295_05045 PF02874 ATP synthase alpha/beta family, beta-barrel domain HF295_05045 PF00306 ATP synthase alpha/beta chain, C terminal domain HF295_05045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF295_05050 PF00213 ATP synthase delta (OSCP) subunit HF295_05055 PF00430 ATP synthase B/B' CF(0) HF295_05060 PF00137 ATP synthase subunit C HF295_05065 PF00119 ATP synthase A chain HF295_05085 PF13419 Haloacid dehalogenase-like hydrolase HF295_05090 PF01351 Ribonuclease HII HF295_05095 PF01926 50S ribosome-binding GTPase HF295_05100 PF10502 Signal peptidase, peptidase S26 HF295_05105 PF01580 FtsK/SpoIIIE family HF295_05105 PF09397 Ftsk gamma domain HF295_05105 PF17854 FtsK alpha domain HF295_05120 PF02978 Signal peptide binding domain HF295_05120 PF00448 SRP54-type protein, GTPase domain HF295_05120 PF02881 SRP54-type protein, helical bundle domain HF295_05125 PF04297 Putative helix-turn-helix protein, YlxM / p13 like HF295_05130 PF00448 SRP54-type protein, GTPase domain HF295_05130 PF02881 SRP54-type protein, helical bundle domain HF295_05135 PF01396 Topoisomerase DNA binding C4 zinc finger HF295_05135 PF01751 Toprim domain HF295_05135 PF01131 DNA topoisomerase HF295_05140 PF17827 PrmC N-terminal domain HF295_05140 PF05175 Methyltransferase small domain HF295_05145 PF00472 RF-1 domain HF295_05145 PF03462 PCRF domain HF295_05150 PF00772 DnaB-like helicase N terminal domain HF295_05150 PF03796 DnaB-like helicase C terminal domain HF295_05155 PF02272 DHHA1 domain HF295_05155 PF01368 DHH family HF295_05160 PF01084 Ribosomal protein S18 HF295_05165 PF00436 Single-strand binding protein family HF295_05170 PF01250 Ribosomal protein S6 HF295_05185 PF02464 Competence-damaged protein HF295_05185 PF18146 Damage-inducible protein CinA KH domain HF295_05185 PF00994 Probable molybdopterin binding domain HF295_05190 PF01926 50S ribosome-binding GTPase HF295_05190 PF06071 Protein of unknown function (DUF933) HF295_05195 PF01026 TatD related DNase HF295_05200 PF02779 Transketolase, pyrimidine binding domain HF295_05200 PF02780 Transketolase, C-terminal domain HF295_05200 PF00456 Transketolase, thiamine diphosphate binding domain HF295_05205 PF03144 Elongation factor Tu domain 2 HF295_05205 PF00009 Elongation factor Tu GTP binding domain HF295_05205 PF03143 Elongation factor Tu C-terminal domain HF295_05210 PF03764 Elongation factor G, domain IV HF295_05210 PF14492 Elongation Factor G, domain II HF295_05210 PF00679 Elongation factor G C-terminus HF295_05210 PF00009 Elongation factor Tu GTP binding domain HF295_05210 PF03144 Elongation factor Tu domain 2 HF295_05215 PF00177 Ribosomal protein S7p/S5e HF295_05220 PF00164 Ribosomal protein S12/S23 HF295_05225 PF00293 NUDIX domain HF295_05235 PF06628 Catalase-related immune-responsive HF295_05235 PF00199 Catalase HF295_05240 PF04304 Protein of unknown function (DUF454) HF295_05300 PF00623 RNA polymerase Rpb1, domain 2 HF295_05300 PF04983 RNA polymerase Rpb1, domain 3 HF295_05300 PF04998 RNA polymerase Rpb1, domain 5 HF295_05300 PF04997 RNA polymerase Rpb1, domain 1 HF295_05300 PF05000 RNA polymerase Rpb1, domain 4 HF295_05305 PF04561 RNA polymerase Rpb2, domain 2 HF295_05305 PF04565 RNA polymerase Rpb2, domain 3 HF295_05305 PF10385 RNA polymerase beta subunit external 1 domain HF295_05305 PF00562 RNA polymerase Rpb2, domain 6 HF295_05305 PF04560 RNA polymerase Rpb2, domain 7 HF295_05305 PF04563 RNA polymerase beta subunit HF295_05310 PF05175 Methyltransferase small domain HF295_05315 PF00542 Ribosomal protein L7/L12 C-terminal domain HF295_05315 PF16320 Ribosomal protein L7/L12 dimerisation domain HF295_05320 PF00466 Ribosomal protein L10 HF295_05325 PF00687 Ribosomal protein L1p/L10e family HF295_05330 PF00298 Ribosomal protein L11, RNA binding domain HF295_05330 PF03946 Ribosomal protein L11, N-terminal domain HF295_05335 PF00005 ABC transporter HF295_05340 PF12704 MacB-like periplasmic core domain HF295_05340 PF00005 ABC transporter HF295_05340 PF02687 FtsX-like permease family HF295_05345 PF00467 KOW motif HF295_05345 PF02357 Transcription termination factor nusG HF295_05355 PF00471 Ribosomal protein L33 HF295_05365 PF08032 RNA 2'-O ribose methyltransferase substrate binding HF295_05365 PF00588 SpoU rRNA Methylase family HF295_05370 PF00636 Ribonuclease III domain HF295_05375 PF01406 tRNA synthetases class I (C) catalytic domain HF295_05375 PF09190 DALR domain HF295_05380 PF00313 'Cold-shock' DNA-binding domain HF295_05385 PF02646 RmuC family HF295_05390 PF13396 Phospholipase_D-nuclease N-terminal HF295_05390 PF13091 PLD-like domain HF295_05395 PF07411 Domain of unknown function (DUF1508) HF295_05400 PF00380 Ribosomal protein S9/S16 HF295_05405 PF00572 Ribosomal protein L13 HF295_05410 PF08264 Anticodon-binding domain of tRNA HF295_05410 PF01588 Putative tRNA binding domain HF295_05410 PF09334 tRNA synthetases class I (M) HF295_05415 PF01965 DJ-1/PfpI family HF295_05420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HF295_05425 PF05175 Methyltransferase small domain HF295_05430 PF04468 PSP1 C-terminal conserved region HF295_05435 PF09115 DNA polymerase III, delta subunit, C terminal HF295_05440 PF02223 Thymidylate kinase HF295_05445 PF00005 ABC transporter HF295_05450 PF00950 ABC 3 transport family HF295_05455 PF01416 tRNA pseudouridine synthase HF295_05465 PF00005 ABC transporter HF295_05470 PF00005 ABC transporter HF295_05480 PF01196 Ribosomal protein L17 HF295_05485 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HF295_05485 PF01000 RNA polymerase Rpb3/RpoA insert domain HF295_05485 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HF295_05490 PF00411 Ribosomal protein S11 HF295_05495 PF00416 Ribosomal protein S13/S18 HF295_05500 PF00444 Ribosomal protein L36 HF295_05505 PF01176 Translation initiation factor 1A / IF-1 HF295_05510 PF00557 Metallopeptidase family M24 HF295_05515 PF05191 Adenylate kinase, active site lid HF295_05520 PF00344 SecY translocase HF295_05525 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HF295_05530 PF00327 Ribosomal protein L30p/L7e HF295_05535 PF03719 Ribosomal protein S5, C-terminal domain HF295_05535 PF00333 Ribosomal protein S5, N-terminal domain HF295_05540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HF295_05545 PF00347 Ribosomal protein L6 HF295_05550 PF00410 Ribosomal protein S8 HF295_05555 PF00253 Ribosomal protein S14p/S29e HF295_05560 PF00281 Ribosomal protein L5 HF295_05560 PF00673 ribosomal L5P family C-terminus HF295_05565 PF00467 KOW motif HF295_05565 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HF295_05570 PF00238 Ribosomal protein L14p/L23e HF295_05575 PF00366 Ribosomal protein S17 HF295_05580 PF00831 Ribosomal L29 protein HF295_05585 PF00252 Ribosomal protein L16p/L10e HF295_05590 PF07650 KH domain HF295_05590 PF00189 Ribosomal protein S3, C-terminal domain HF295_05595 PF00237 Ribosomal protein L22p/L17e HF295_05600 PF00203 Ribosomal protein S19 HF295_05605 PF00181 Ribosomal Proteins L2, RNA binding domain HF295_05605 PF03947 Ribosomal Proteins L2, C-terminal domain HF295_05610 PF00276 Ribosomal protein L23 HF295_05615 PF00573 Ribosomal protein L4/L1 family HF295_05620 PF00297 Ribosomal protein L3 HF295_05625 PF00338 Ribosomal protein S10p/S20e HF295_05630 PF13307 Helicase C-terminal domain HF295_05630 PF04851 Type III restriction enzyme, res subunit HF295_05630 PF00929 Exonuclease HF295_05645 PF09827 CRISPR associated protein Cas2 HF295_05650 PF01867 CRISPR associated protein Cas1 HF295_05655 PF13395 HNH endonuclease HF295_05655 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 HF295_05655 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 HF295_05655 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 HF295_05660 PF02535 ZIP Zinc transporter HF295_05665 PF00465 Iron-containing alcohol dehydrogenase HF295_05670 PF03009 Glycerophosphoryl diester phosphodiesterase family HF295_05675 PF00459 Inositol monophosphatase family HF295_05690 PF00690 Cation transporter/ATPase, N-terminus HF295_05690 PF00689 Cation transporting ATPase, C-terminus HF295_05700 PF00248 Aldo/keto reductase family HF295_05715 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HF295_05745 PF08448 PAS fold HF295_05745 PF00990 Diguanylate cyclase, GGDEF domain HF295_05815 PF02195 ParB-like nuclease domain HF295_05815 PF17762 HTH domain found in ParB protein HF295_05820 PF13614 AAA domain HF295_05835 PF02527 rRNA small subunit methyltransferase G HF295_05840 PF02527 rRNA small subunit methyltransferase G HF295_05845 PF13932 GidA associated domain HF295_05845 PF01134 Glucose inhibited division protein A HF295_05860 PF14437 MafB19-like deaminase HF295_05865 PF00265 Thymidine kinase HF295_05870 PF01197 Ribosomal protein L31 HF295_05875 PF03949 Malic enzyme, NAD binding domain HF295_05875 PF00390 Malic enzyme, N-terminal domain HF295_05880 PF02545 Maf-like protein HF295_05885 PF01171 PP-loop family HF295_05885 PF00156 Phosphoribosyl transferase domain HF295_05885 PF11734 TilS substrate C-terminal domain HF295_05890 PF00004 ATPase family associated with various cellular activities (AAA) HF295_05890 PF17862 AAA+ lid domain HF295_05890 PF01434 Peptidase family M41 HF295_05895 PF01479 S4 domain HF295_05905 PF00152 tRNA synthetases class II (D, K and N) HF295_05905 PF01336 OB-fold nucleic acid binding domain HF295_05920 PF01116 Fructose-bisphosphate aldolase class-II HF295_05925 PF01523 Putative modulator of DNA gyrase HF295_05930 PF01523 Putative modulator of DNA gyrase HF295_05935 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HF295_05950 PF02690 Na+/Pi-cotransporter HF295_05955 PF02272 DHHA1 domain HF295_05955 PF01368 DHH family HF295_05960 PF01368 DHH family HF295_05960 PF02272 DHHA1 domain HF295_05965 PF04231 Endonuclease I HF295_05990 PF00528 Binding-protein-dependent transport system inner membrane component HF295_05995 PF00005 ABC transporter HF295_05995 PF17912 MalK OB fold domain HF295_06015 PF02132 RecR protein HF295_06015 PF13662 Toprim domain HF295_06020 PF02575 YbaB/EbfC DNA-binding family HF295_06025 PF12169 DNA polymerase III subunits gamma and tau domain III HF295_06035 PF10396 GTP-binding protein TrmE N-terminus HF295_06035 PF12631 MnmE helical domain HF295_06035 PF01926 50S ribosome-binding GTPase HF295_06040 PF01171 PP-loop family HF295_06060 PF01145 SPFH domain / Band 7 family HF295_06065 PF01336 OB-fold nucleic acid binding domain HF295_06065 PF00152 tRNA synthetases class II (D, K and N) HF295_06080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HF295_06080 PF14572 Phosphoribosyl synthetase-associated domain HF295_06085 PF04026 SpoVG HF295_06090 PF08544 GHMP kinases C terminal HF295_06090 PF00288 GHMP kinases N terminal domain HF295_06100 PF11798 IMS family HHH motif HF295_06100 PF00817 impB/mucB/samB family HF295_06100 PF11799 impB/mucB/samB family C-terminal domain HF295_06105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HF295_06105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HF295_06110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HF295_06115 PF01761 3-dehydroquinate synthase HF295_06120 PF01264 Chorismate synthase HF295_06125 PF08501 Shikimate dehydrogenase substrate binding domain HF295_06125 PF01488 Shikimate / quinate 5-dehydrogenase HF295_06125 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HF295_06130 PF01220 Dehydroquinase class II HF295_06135 PF18152 DAHP synthase ferredoxin-like domain HF295_06135 PF00793 DAHP synthetase I family HF295_06175 PF00144 Beta-lactamase HF295_06200 PF00712 DNA polymerase III beta subunit, N-terminal domain HF295_06200 PF02768 DNA polymerase III beta subunit, C-terminal domain HF295_06200 PF02767 DNA polymerase III beta subunit, central domain HF295_06205 PF11638 DnaA N-terminal domain HF295_06205 PF08299 Bacterial dnaA protein helix-turn-helix HF295_06205 PF00308 Bacterial dnaA protein HF295_06210 PF00468 Ribosomal protein L34 HF295_06215 PF00825 Ribonuclease P HF295_06220 PF02096 60Kd inner membrane protein HF295_06230 PF01195 Peptidyl-tRNA hydrolase HF295_06235 PF01230 HIT domain HF295_06240 PF13419 Haloacid dehalogenase-like hydrolase HF295_06245 PF00781 Diacylglycerol kinase catalytic domain HF295_06250 PF13331 Domain of unknown function (DUF4093) HF295_06250 PF13662 Toprim domain HF295_06255 PF00398 Ribosomal RNA adenine dimethylase HF295_06260 PF00464 Serine hydroxymethyltransferase HF295_06265 PF01430 Hsp33 protein HF295_06270 PF01207 Dihydrouridine synthase (Dus) HF295_06275 PF11871 Domain of unknown function (DUF3391) HF295_06275 PF01966 HD domain HF295_06300 PF13167 GTP-binding GTPase N-terminal HF295_06300 PF01926 50S ribosome-binding GTPase HF295_06300 PF16360 GTP-binding GTPase Middle Region HF295_06310 PF00535 Glycosyl transferase family 2 HF295_06315 PF04138 GtrA-like protein HF295_06320 PF02457 DisA bacterial checkpoint controller nucleotide-binding HF295_06335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HF295_06340 PF02542 YgbB family HF295_06350 PF01106 NifU-like domain HF295_06355 PF04608 Phosphatidylglycerophosphatase A HF295_06360 PF00575 S1 RNA binding domain HF295_06365 PF00342 Phosphoglucose isomerase HF295_06375 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HF295_06380 PF00814 Glycoprotease family HF295_06390 PF00814 Glycoprotease family HF295_06395 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HF295_06395 PF00749 tRNA synthetases class I (E and Q), catalytic domain HF295_06405 PF13361 UvrD-like helicase C-terminal domain HF295_06405 PF00580 UvrD/REP helicase N-terminal domain HF295_06410 PF01653 NAD-dependent DNA ligase adenylation domain HF295_06410 PF03120 NAD-dependent DNA ligase OB-fold domain HF295_06410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HF295_06410 PF12826 Helix-hairpin-helix motif HF295_06410 PF00533 BRCA1 C Terminus (BRCT) domain HF295_06415 PF17760 UvrA interaction domain HF295_06415 PF00005 ABC transporter HF295_06415 PF17755 UvrA DNA-binding domain HF295_06425 PF07475 HPr Serine kinase C-terminal domain HF295_06425 PF02603 HPr Serine kinase N terminus HF295_06430 PF01790 Prolipoprotein diacylglyceryl transferase HF295_06435 PF10298 WhiA N-terminal LAGLIDADG-like domain HF295_06435 PF14527 WhiA LAGLIDADG-like domain HF295_06435 PF02650 WhiA C-terminal HTH domain HF295_06440 PF01648 4'-phosphopantetheinyl transferase superfamily HF295_06450 PF16921 Tex protein YqgF-like domain HF295_06450 PF17674 HHH domain HF295_06450 PF09371 Tex-like protein N-terminal domain HF295_06450 PF00575 S1 RNA binding domain HF295_06505 PF03773 Predicted permease HF295_06520 PF03989 DNA gyrase C-terminal domain, beta-propeller HF295_06520 PF00521 DNA gyrase/topoisomerase IV, subunit A HF295_06525 PF00986 DNA gyrase B subunit, carboxyl terminus HF295_06525 PF00204 DNA gyrase B HF295_06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF295_06525 PF01751 Toprim domain HF295_06530 PF02463 RecF/RecN/SMC N terminal domain HF295_06540 PF00270 DEAD/DEAH box helicase HF295_06540 PF17757 UvrB interaction domain HF295_06540 PF03461 TRCF domain HF295_06540 PF02559 CarD-like/TRCF domain HF295_06540 PF00271 Helicase conserved C-terminal domain HF295_06545 PF00106 short chain dehydrogenase HF295_06555 PF01144 Coenzyme A transferase HF295_06560 PF01144 Coenzyme A transferase HF295_06565 PF03061 Thioesterase superfamily HF295_06570 PF05853 beta-keto acid cleavage enzyme HF295_06580 PF04055 Radical SAM superfamily HF295_06580 PF12544 Lysine-2,3-aminomutase HF295_06590 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit HF295_06595 PF02310 B12 binding domain HF295_06595 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase HF295_06600 PF01923 Cobalamin adenosyltransferase HF295_06605 PF02310 B12 binding domain HF295_06610 PF13941 MutL protein HF295_06615 PF06368 Methylaspartate mutase E chain (MutE) HF295_06620 PF07476 Methylaspartate ammonia-lyase C-terminus HF295_06620 PF05034 Methylaspartate ammonia-lyase N-terminus HF295_06625 PF06857 Malonate decarboxylase delta subunit (MdcD) HF295_06630 PF03328 HpcH/HpaI aldolase/citrate lyase family HF295_06635 PF04223 Citrate lyase, alpha subunit (CitF) HF295_06640 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HF295_06640 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HF295_06655 PF01554 MatE HF295_06670 PF05593 RHS Repeat HF295_06680 PF05593 RHS Repeat HF295_06730 PF01496 V-type ATPase 116kDa subunit family HF295_06750 PF16886 ATPsynthase alpha/beta subunit N-term extension HF295_06750 PF02874 ATP synthase alpha/beta family, beta-barrel domain HF295_06750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF295_06755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF295_06755 PF02874 ATP synthase alpha/beta family, beta-barrel domain HF295_06760 PF01813 ATP synthase subunit D HF295_06780 PF02127 Aminopeptidase I zinc metalloprotease (M18) HF295_06790 PF13419 Haloacid dehalogenase-like hydrolase HF295_06795 PF12833 Helix-turn-helix domain HF295_06805 PF03009 Glycerophosphoryl diester phosphodiesterase family HF295_06815 PF00679 Elongation factor G C-terminus HF295_06815 PF14492 Elongation Factor G, domain II HF295_06815 PF03764 Elongation factor G, domain IV HF295_06815 PF00009 Elongation factor Tu GTP binding domain HF295_06815 PF03144 Elongation factor Tu domain 2 HF295_06825 PF02645 Uncharacterised protein, DegV family COG1307 HF295_06830 PF12464 Maltose acetyltransferase HF295_06830 PF14602 Hexapeptide repeat of succinyl-transferase HF295_06855 PF13276 HTH-like domain HF295_06855 PF13333 Integrase core domain HF295_06855 PF00665 Integrase core domain HF295_06920 PF01809 Putative membrane protein insertion efficiency factor HF295_06925 PF04231 Endonuclease I HF295_06930 PF02384 N-6 DNA Methylase HF295_06935 PF02789 Cytosol aminopeptidase family, N-terminal domain HF295_06935 PF00883 Cytosol aminopeptidase family, catalytic domain HF295_06940 PF00871 Acetokinase family HF295_06950 PF02811 PHP domain HF295_06950 PF07733 Bacterial DNA polymerase III alpha NTPase domain HF295_06950 PF14579 Helix-hairpin-helix motif HF295_06950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HF295_06950 PF01336 OB-fold nucleic acid binding domain HF295_06955 PF00365 Phosphofructokinase HF295_06960 PF06969 HemN C-terminal domain HF295_06960 PF04055 Radical SAM superfamily HF295_06965 PF04851 Type III restriction enzyme, res subunit HF295_06965 PF02151 UvrB/uvrC motif HF295_06965 PF12344 Ultra-violet resistance protein B HF295_06965 PF17757 UvrB interaction domain HF295_06965 PF00271 Helicase conserved C-terminal domain HF295_06985 PF05958 tRNA (Uracil-5-)-methyltransferase HF295_06985 PF01938 TRAM domain HF295_07015 PF01022 Bacterial regulatory protein, arsR family HF295_07020 PF00403 Heavy-metal-associated domain HF295_07030 PF00403 Heavy-metal-associated domain HF295_07030 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_07030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF295_07075 PF13407 Periplasmic binding protein domain HF295_07080 PF00005 ABC transporter HF295_07085 PF02653 Branched-chain amino acid transport system / permease component HF295_07090 PF00294 pfkB family carbohydrate kinase HF295_07095 PF08220 DeoR-like helix-turn-helix domain HF295_07095 PF00455 DeoR C terminal sensor domain HF295_07100 PF00834 Ribulose-phosphate 3 epimerase family HF295_07110 PF02502 Ribose/Galactose Isomerase HF295_07120 PF11074 Domain of unknown function(DUF2779) HF295_07125 PF00128 Alpha amylase, catalytic domain HF295_07125 PF16738 Starch-binding module 26 HF295_07135 PF03551 Transcriptional regulator PadR-like family HF295_07150 PF04405 Domain of Unknown function (DUF542) HF295_07150 PF01814 Hemerythrin HHE cation binding domain HF295_07155 PF00578 AhpC/TSA family HF295_07160 PF04439 Streptomycin adenylyltransferase HF295_07185 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HF295_07185 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HF295_07195 PF13520 Amino acid permease HF295_07200 PF02384 N-6 DNA Methylase HF295_07205 PF01420 Type I restriction modification DNA specificity domain HF295_07210 PF11867 Domain of unknown function (DUF3387) HF295_07210 PF18766 SWI2/SNF2 ATPase HF295_07210 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HF295_07230 PF13195 Protein of unknown function (DUF4011) HF295_07230 PF13087 AAA domain HF295_07230 PF13086 AAA domain HF295_07235 PF17726 Dam-replacing HTH domain HF295_07235 PF06044 Dam-replacing family HF295_07280 PF07581 The GLUG motif HF295_07280 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) HF295_07310 PF00106 short chain dehydrogenase HF295_07330 PF00294 pfkB family carbohydrate kinase HF295_07335 PF04227 Indigoidine synthase A like protein HF295_07340 PF01965 DJ-1/PfpI family HF295_07375 PF00270 DEAD/DEAH box helicase HF295_07375 PF00271 Helicase conserved C-terminal domain HF295_07390 PF09586 Bacterial membrane protein YfhO HF295_07395 PF04229 GrpB protein HF295_07410 PF01894 Uncharacterised protein family UPF0047 HF295_07415 PF02254 TrkA-N domain HF295_07415 PF07885 Ion channel HF295_07425 PF13684 Dihydroxyacetone kinase family HF295_07425 PF02734 DAK2 domain HF295_07430 PF03441 FAD binding domain of DNA photolyase HF295_07430 PF00875 DNA photolyase HF295_07440 PF01212 Beta-eliminating lyase HF295_07485 PF06397 Desulfoferrodoxin, N-terminal domain HF295_07485 PF01880 Desulfoferrodoxin HF295_07490 PF02673 Bacitracin resistance protein BacA HF295_07495 PF02673 Bacitracin resistance protein BacA HF295_07505 PF13614 AAA domain HF295_07505 PF02706 Chain length determinant protein HF295_07505 PF13807 G-rich domain on putative tyrosine kinase HF295_07515 PF00072 Response regulator receiver domain HF295_07515 PF00486 Transcriptional regulatory protein, C terminal HF295_07520 PF00989 PAS fold HF295_07520 PF00672 HAMP domain HF295_07520 PF18698 Histidine kinase sensor domain HF295_07520 PF00512 His Kinase A (phospho-acceptor) domain HF295_07520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF295_07525 PF02719 Polysaccharide biosynthesis protein HF295_07530 PF05958 tRNA (Uracil-5-)-methyltransferase HF295_07530 PF01938 TRAM domain HF295_07535 PF01268 Formate--tetrahydrofolate ligase HF295_07550 PF01554 MatE HF295_07555 PF00664 ABC transporter transmembrane region HF295_07555 PF00005 ABC transporter HF295_07560 PF12146 Serine aminopeptidase, S33 HF295_07570 PF07670 Nucleoside recognition HF295_07570 PF07664 Ferrous iron transport protein B C terminus HF295_07570 PF02421 Ferrous iron transport protein B HF295_07570 PF17910 FeoB cytosolic helical domain HF295_07575 PF02742 Iron dependent repressor, metal binding and dimerisation domain HF295_07575 PF01325 Iron dependent repressor, N-terminal DNA binding domain HF295_07580 PF01134 Glucose inhibited division protein A HF295_07585 PF02899 Phage integrase, N-terminal SAM-like domain HF295_07585 PF00589 Phage integrase family HF295_07590 PF00128 Alpha amylase, catalytic domain HF295_07595 PF02590 Predicted SPOUT methyltransferase HF295_07660 PF13302 Acetyltransferase (GNAT) domain HF295_07675 PF00392 Bacterial regulatory proteins, gntR family HF295_07685 PF00005 ABC transporter HF295_07695 PF00248 Aldo/keto reductase family HF295_07725 PF01431 Peptidase family M13 HF295_07725 PF05649 Peptidase family M13 HF295_07740 PF00563 EAL domain HF295_07740 PF00990 Diguanylate cyclase, GGDEF domain HF295_07740 PF03707 Bacterial signalling protein N terminal repeat HF295_07745 PF13426 PAS domain HF295_07745 PF08448 PAS fold HF295_07745 PF05231 MASE1 HF295_07745 PF00990 Diguanylate cyclase, GGDEF domain HF295_07745 PF00563 EAL domain HF295_07745 PF08447 PAS fold HF295_07765 PF01479 S4 domain HF295_07765 PF00849 RNA pseudouridylate synthase HF295_07770 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HF295_07800 PF02608 ABC transporter substrate-binding protein PnrA-like HF295_07820 PF00970 Oxidoreductase FAD-binding domain HF295_07820 PF00111 2Fe-2S iron-sulfur cluster binding domain HF295_07820 PF00175 Oxidoreductase NAD-binding domain HF295_07825 PF02508 Rnf-Nqr subunit, membrane protein HF295_07830 PF02508 Rnf-Nqr subunit, membrane protein HF295_07840 PF03116 NQR2, RnfD, RnfE family HF295_07845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HF295_07850 PF00144 Beta-lactamase HF295_07860 PF00583 Acetyltransferase (GNAT) family HF295_07865 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HF295_07865 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HF295_07875 PF01590 GAF domain HF295_07875 PF00360 Phytochrome region HF295_07875 PF00563 EAL domain HF295_07875 PF00990 Diguanylate cyclase, GGDEF domain HF295_07885 PF01594 AI-2E family transporter HF295_07895 PF00248 Aldo/keto reductase family HF295_07920 PF01212 Beta-eliminating lyase HF295_07930 PF00709 Adenylosuccinate synthetase HF295_07935 PF00206 Lyase HF295_07935 PF10397 Adenylosuccinate lyase C-terminus HF295_07940 PF01694 Rhomboid family HF295_07945 PF07977 FabA-like domain HF295_07950 PF02801 Beta-ketoacyl synthase, C-terminal domain HF295_07950 PF00109 Beta-ketoacyl synthase, N-terminal domain HF295_07960 PF00698 Acyl transferase domain HF295_07965 PF03060 Nitronate monooxygenase HF295_07970 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HF295_07970 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HF295_07975 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HF295_07980 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HF295_07980 PF17848 Acetyl-coA carboxylase zinc finger domain HF295_07985 PF00289 Biotin carboxylase, N-terminal domain HF295_07985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF295_07985 PF02785 Biotin carboxylase C-terminal domain HF295_07990 PF00364 Biotin-requiring enzyme HF295_07995 PF00550 Phosphopantetheine attachment site HF295_08030 PF08402 TOBE domain HF295_08030 PF00005 ABC transporter HF295_08035 PF00528 Binding-protein-dependent transport system inner membrane component HF295_08050 PF00313 'Cold-shock' DNA-binding domain HF295_08055 PF02142 MGS-like domain HF295_08060 PF14310 Fibronectin type III-like domain HF295_08060 PF00933 Glycosyl hydrolase family 3 N terminal domain HF295_08060 PF01915 Glycosyl hydrolase family 3 C-terminal domain HF295_08065 PF00294 pfkB family carbohydrate kinase HF295_08070 PF01156 Inosine-uridine preferring nucleoside hydrolase HF295_08080 PF00155 Aminotransferase class I and II HF295_08085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HF295_08090 PF00756 Putative esterase HF295_08105 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HF295_08105 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HF295_08110 PF04199 Putative cyclase HF295_08115 PF02567 Phenazine biosynthesis-like protein HF295_08120 PF04226 Transglycosylase associated protein HF295_08125 PF00440 Bacterial regulatory proteins, tetR family HF295_08135 PF00326 Prolyl oligopeptidase family HF295_08135 PF07676 WD40-like Beta Propeller Repeat HF295_08165 PF08378 Nuclease-related domain HF295_08175 PF00528 Binding-protein-dependent transport system inner membrane component HF295_08180 PF03313 Serine dehydratase alpha chain HF295_08180 PF03315 Serine dehydratase beta chain HF295_08195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HF295_08195 PF00037 4Fe-4S binding domain HF295_08195 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HF295_08200 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HF295_08200 PF00037 4Fe-4S binding domain HF295_08200 PF02256 Iron hydrogenase small subunit HF295_08200 PF02906 Iron only hydrogenase large subunit, C-terminal domain HF295_08225 PF00117 Glutamine amidotransferase class-I HF295_08225 PF06418 CTP synthase N-terminus HF295_08245 PF13635 Domain of unknown function (DUF4143) HF295_08245 PF13173 AAA domain HF295_08255 PF00293 NUDIX domain HF295_08265 PF02583 Metal-sensitive transcriptional repressor HF295_08270 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_08270 PF13192 Thioredoxin domain HF295_08275 PF13192 Thioredoxin domain HF295_08275 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_08280 PF00056 lactate/malate dehydrogenase, NAD binding domain HF295_08280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HF295_08285 PF01894 Uncharacterised protein family UPF0047 HF295_08310 PF01266 FAD dependent oxidoreductase HF295_08315 PF01593 Flavin containing amine oxidoreductase HF295_08325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HF295_08325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HF295_08345 PF01966 HD domain HF295_08345 PF00072 Response regulator receiver domain HF295_08355 PF01966 HD domain HF295_08360 PF14815 NUDIX domain HF295_08360 PF00730 HhH-GPD superfamily base excision DNA repair protein HF295_08365 PF00118 TCP-1/cpn60 chaperonin family HF295_08370 PF00166 Chaperonin 10 Kd subunit HF295_08390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HF295_08400 PF01738 Dienelactone hydrolase family HF295_08410 PF00005 ABC transporter HF295_08420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HF295_08425 PF01386 Ribosomal L25p family HF295_08425 PF14693 Ribosomal protein TL5, C-terminal domain HF295_08430 PF04542 Sigma-70 region 2 HF295_08430 PF08281 Sigma-70, region 4 HF295_08450 PF04231 Endonuclease I HF295_08460 PF02073 Thermophilic metalloprotease (M29) HF295_08465 PF02615 Malate/L-lactate dehydrogenase HF295_08470 PF01641 SelR domain HF295_08500 PF07687 Peptidase dimerisation domain HF295_08500 PF01546 Peptidase family M20/M25/M40 HF295_08505 PF07859 alpha/beta hydrolase fold HF295_08530 PF02386 Cation transport protein HF295_08535 PF00625 Guanylate kinase HF295_08545 PF00085 Thioredoxin HF295_08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF295_08575 PF00005 ABC transporter HF295_08575 PF13732 Domain of unknown function (DUF4162) HF295_08585 PF00491 Arginase family HF295_08590 PF01276 Orn/Lys/Arg decarboxylase, major domain HF295_08590 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HF295_08600 PF01212 Beta-eliminating lyase HF295_08605 PF13375 RnfC Barrel sandwich hybrid domain HF295_08605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HF295_08605 PF13237 4Fe-4S dicluster domain HF295_08605 PF10531 SLBB domain HF295_08610 PF03116 NQR2, RnfD, RnfE family HF295_08625 PF02508 Rnf-Nqr subunit, membrane protein HF295_08630 PF02508 Rnf-Nqr subunit, membrane protein HF295_08645 PF00221 Aromatic amino acid lyase HF295_08650 PF17392 Urocanase C-terminal domain HF295_08650 PF17391 Urocanase N-terminal domain HF295_08650 PF01175 Urocanase Rossmann-like domain HF295_08655 PF02971 Formiminotransferase domain HF295_08655 PF07837 Formiminotransferase domain, N-terminal subdomain HF295_08660 PF01979 Amidohydrolase family HF295_08665 PF04961 Formiminotransferase-cyclodeaminase HF295_08670 PF00923 Transaldolase/Fructose-6-phosphate aldolase HF295_08675 PF00873 AcrB/AcrD/AcrF family HF295_08685 PF12704 MacB-like periplasmic core domain HF295_08685 PF02687 FtsX-like permease family HF295_08685 PF00005 ABC transporter HF295_08690 PF00155 Aminotransferase class I and II HF295_08695 PF00106 short chain dehydrogenase HF295_08700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HF295_08705 PF00255 Glutathione peroxidase