locus-tag class description KHQ81_00080 PF00436 Single-strand binding protein family KHQ81_00085 PF05857 TraX protein KHQ81_00105 PF01522 Polysaccharide deacetylase KHQ81_00115 PF01938 TRAM domain KHQ81_00115 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ81_00130 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family KHQ81_00140 PF00005 ABC transporter KHQ81_00150 PF00561 alpha/beta hydrolase fold KHQ81_00170 PF01713 Smr domain KHQ81_00170 PF00488 MutS domain V KHQ81_00185 PF00005 ABC transporter KHQ81_00195 PF13411 MerR HTH family regulatory protein KHQ81_00200 PF00324 Amino acid permease KHQ81_00205 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_00205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ81_00215 PF03606 C4-dicarboxylate anaerobic carrier KHQ81_00245 PF00440 Bacterial regulatory proteins, tetR family KHQ81_00260 PF00072 Response regulator receiver domain KHQ81_00265 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KHQ81_00265 PF17203 Single cache domain 3 KHQ81_00265 PF00989 PAS fold KHQ81_00265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_00270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KHQ81_00270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ81_00295 PF00805 Pentapeptide repeats (8 copies) KHQ81_00310 PF01593 Flavin containing amine oxidoreductase KHQ81_00310 PF02027 RolB/RolC glucosidase family KHQ81_00315 PF02492 CobW/HypB/UreG, nucleotide-binding domain KHQ81_00320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KHQ81_00320 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KHQ81_00320 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_00330 PF00005 ABC transporter KHQ81_00340 PF05977 Transmembrane secretion effector KHQ81_00360 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_00360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KHQ81_00370 PF02001 Protein of unknown function DUF134 KHQ81_00385 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KHQ81_00395 PF10609 NUBPL iron-transfer P-loop NTPase KHQ81_00405 PF07722 Peptidase C26 KHQ81_00420 PF13333 Integrase core domain KHQ81_00420 PF00665 Integrase core domain KHQ81_00420 PF13276 HTH-like domain KHQ81_00425 PF01695 IstB-like ATP binding protein KHQ81_00435 PF00665 Integrase core domain KHQ81_00445 PF01545 Cation efflux family KHQ81_00445 PF16916 Dimerisation domain of Zinc Transporter KHQ81_00460 PF01250 Ribosomal protein S6 KHQ81_00465 PF00436 Single-strand binding protein family KHQ81_00470 PF01084 Ribosomal protein S18 KHQ81_00480 PF01368 DHH family KHQ81_00480 PF02272 DHHA1 domain KHQ81_00485 PF03948 Ribosomal protein L9, C-terminal domain KHQ81_00485 PF01281 Ribosomal protein L9, N-terminal domain KHQ81_00490 PF00772 DnaB-like helicase N terminal domain KHQ81_00490 PF03796 DnaB-like helicase C terminal domain KHQ81_00495 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_00495 PF07581 The GLUG motif KHQ81_00500 PF07581 The GLUG motif KHQ81_00500 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_00510 PF01554 MatE KHQ81_00525 PF03462 PCRF domain KHQ81_00525 PF00472 RF-1 domain KHQ81_00550 PF13333 Integrase core domain KHQ81_00550 PF00665 Integrase core domain KHQ81_00550 PF13276 HTH-like domain KHQ81_00555 PF13847 Methyltransferase domain KHQ81_00555 PF17827 PrmC N-terminal domain KHQ81_00570 PF00665 Integrase core domain KHQ81_00575 PF01695 IstB-like ATP binding protein KHQ81_00630 PF00483 Nucleotidyl transferase KHQ81_00635 PF00483 Nucleotidyl transferase KHQ81_00640 PF00113 Enolase, C-terminal TIM barrel domain KHQ81_00640 PF03952 Enolase, N-terminal domain KHQ81_00645 PF03840 Preprotein translocase SecG subunit KHQ81_00650 PF01668 SmpB protein KHQ81_00685 PF00625 Guanylate kinase KHQ81_00700 PF13649 Methyltransferase domain KHQ81_00735 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_00760 PF00149 Calcineurin-like phosphoesterase KHQ81_00780 PF14622 Ribonuclease-III-like KHQ81_00780 PF00035 Double-stranded RNA binding motif KHQ81_00785 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_00790 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_00790 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ81_00795 PF00005 ABC transporter KHQ81_00795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_00800 PF00005 ABC transporter KHQ81_00800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_00805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ81_00830 PF12704 MacB-like periplasmic core domain KHQ81_00830 PF00005 ABC transporter KHQ81_00830 PF02687 FtsX-like permease family KHQ81_00840 PF12833 Helix-turn-helix domain KHQ81_00855 PF00005 ABC transporter KHQ81_00855 PF00664 ABC transporter transmembrane region KHQ81_00860 PF00664 ABC transporter transmembrane region KHQ81_00860 PF00005 ABC transporter KHQ81_00865 PF13276 HTH-like domain KHQ81_00865 PF00665 Integrase core domain KHQ81_00865 PF13333 Integrase core domain KHQ81_00870 PF00210 Ferritin-like domain KHQ81_00905 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_00905 PF06480 FtsH Extracellular KHQ81_00905 PF01434 Peptidase family M41 KHQ81_00905 PF17862 AAA+ lid domain KHQ81_00910 PF01661 Macro domain KHQ81_00955 PF02522 Aminoglycoside 3-N-acetyltransferase KHQ81_00960 PF05257 CHAP domain KHQ81_00960 PF01476 LysM domain KHQ81_00965 PF01048 Phosphorylase superfamily KHQ81_00975 PF01022 Bacterial regulatory protein, arsR family KHQ81_00980 PF01451 Low molecular weight phosphotyrosine protein phosphatase KHQ81_00985 PF01758 Sodium Bile acid symporter family KHQ81_00995 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KHQ81_01015 PF00696 Amino acid kinase family KHQ81_01015 PF01842 ACT domain KHQ81_01015 PF13840 ACT domain KHQ81_01020 PF00742 Homoserine dehydrogenase KHQ81_01020 PF03447 Homoserine dehydrogenase, NAD binding domain KHQ81_01020 PF01842 ACT domain KHQ81_01025 PF02774 Semialdehyde dehydrogenase, dimerisation domain KHQ81_01025 PF01118 Semialdehyde dehydrogenase, NAD binding domain KHQ81_01030 PF00291 Pyridoxal-phosphate dependent enzyme KHQ81_01035 PF00288 GHMP kinases N terminal domain KHQ81_01035 PF08544 GHMP kinases C terminal KHQ81_01040 PF13291 ACT domain KHQ81_01045 PF01381 Helix-turn-helix KHQ81_01055 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_01075 PF03123 CAT RNA binding domain KHQ81_01075 PF00874 PRD domain KHQ81_01080 PF00367 phosphotransferase system, EIIB KHQ81_01080 PF02378 Phosphotransferase system, EIIC KHQ81_01080 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KHQ81_01085 PF13407 Periplasmic binding protein domain KHQ81_01090 PF00005 ABC transporter KHQ81_01095 PF02653 Branched-chain amino acid transport system / permease component KHQ81_01110 PF12704 MacB-like periplasmic core domain KHQ81_01110 PF02687 FtsX-like permease family KHQ81_01110 PF00005 ABC transporter KHQ81_01115 PF12704 MacB-like periplasmic core domain KHQ81_01115 PF00005 ABC transporter KHQ81_01115 PF02687 FtsX-like permease family KHQ81_01140 PF01380 SIS domain KHQ81_01140 PF01418 Helix-turn-helix domain, rpiR family KHQ81_01145 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase KHQ81_01175 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01180 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01200 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01205 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01215 PF00395 S-layer homology domain KHQ81_01215 PF02638 Glycosyl hydrolase-like 10 KHQ81_01215 PF02368 Bacterial Ig-like domain (group 2) KHQ81_01280 PF16326 ABC transporter C-terminal domain KHQ81_01280 PF00005 ABC transporter KHQ81_01280 PF12848 ABC transporter KHQ81_01290 PF01610 Transposase KHQ81_01290 PF13683 Integrase core domain KHQ81_01295 PF00390 Malic enzyme, N-terminal domain KHQ81_01295 PF03949 Malic enzyme, NAD binding domain KHQ81_01300 PF04198 Putative sugar-binding domain KHQ81_01305 PF00596 Class II Aldolase and Adducin N-terminal domain KHQ81_01320 PF01008 Initiation factor 2 subunit family KHQ81_01325 PF01636 Phosphotransferase enzyme family KHQ81_01330 PF00465 Iron-containing alcohol dehydrogenase KHQ81_01335 PF03323 Bacillus/Clostridium GerA spore germination protein KHQ81_01340 PF05504 Spore germination B3/ GerAC like, C-terminal KHQ81_01350 PF03845 Spore germination protein KHQ81_01355 PF03845 Spore germination protein KHQ81_01360 PF03845 Spore germination protein KHQ81_01370 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KHQ81_01370 PF00294 pfkB family carbohydrate kinase KHQ81_01375 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ81_01380 PF03606 C4-dicarboxylate anaerobic carrier KHQ81_01385 PF00356 Bacterial regulatory proteins, lacI family KHQ81_01415 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01435 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01450 PF00356 Bacterial regulatory proteins, lacI family KHQ81_01455 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KHQ81_01460 PF01915 Glycosyl hydrolase family 3 C-terminal domain KHQ81_01460 PF00933 Glycosyl hydrolase family 3 N terminal domain KHQ81_01460 PF14310 Fibronectin type III-like domain KHQ81_01465 PF01055 Glycosyl hydrolases family 31 KHQ81_01465 PF13802 Galactose mutarotase-like KHQ81_01465 PF17137 Domain of unknown function (DUF5110) KHQ81_01465 PF16338 Domain of unknown function (DUF4968) KHQ81_01475 PF00005 ABC transporter KHQ81_01485 PF00005 ABC transporter KHQ81_01495 PF00465 Iron-containing alcohol dehydrogenase KHQ81_01505 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_01505 PF12733 Cadherin-like beta sandwich domain KHQ81_01515 PF00005 ABC transporter KHQ81_01515 PF12848 ABC transporter KHQ81_01530 PF13333 Integrase core domain KHQ81_01530 PF13276 HTH-like domain KHQ81_01530 PF00665 Integrase core domain KHQ81_01535 PF01695 IstB-like ATP binding protein KHQ81_01545 PF00665 Integrase core domain KHQ81_01560 PF00270 DEAD/DEAH box helicase KHQ81_01560 PF09382 RQC domain KHQ81_01560 PF00271 Helicase conserved C-terminal domain KHQ81_01560 PF00570 HRDC domain KHQ81_01560 PF16124 RecQ zinc-binding KHQ81_01570 PF00145 C-5 cytosine-specific DNA methylase KHQ81_01575 PF02976 DNA mismatch repair enzyme MutH KHQ81_01605 PF00731 AIR carboxylase KHQ81_01610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KHQ81_01610 PF02222 ATP-grasp domain KHQ81_01615 PF00586 AIR synthase related protein, N-terminal domain KHQ81_01615 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KHQ81_01615 PF02769 AIR synthase related protein, C-terminal domain KHQ81_01620 PF01259 SAICAR synthetase KHQ81_01625 PF00156 Phosphoribosyl transferase domain KHQ81_01630 PF02769 AIR synthase related protein, C-terminal domain KHQ81_01630 PF00586 AIR synthase related protein, N-terminal domain KHQ81_01635 PF00551 Formyl transferase KHQ81_01640 PF01808 AICARFT/IMPCHase bienzyme KHQ81_01640 PF02142 MGS-like domain KHQ81_01645 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KHQ81_01645 PF02843 Phosphoribosylglycinamide synthetase, C domain KHQ81_01645 PF02844 Phosphoribosylglycinamide synthetase, N domain KHQ81_01650 PF10397 Adenylosuccinate lyase C-terminus KHQ81_01650 PF00206 Lyase KHQ81_01675 PF01695 IstB-like ATP binding protein KHQ81_01695 PF02535 ZIP Zinc transporter KHQ81_01700 PF02374 Anion-transporting ATPase KHQ81_01700 PF17886 HSP20-like domain found in ArsA KHQ81_01705 PF03477 ATP cone domain KHQ81_01705 PF02867 Ribonucleotide reductase, barrel domain KHQ81_01705 PF00317 Ribonucleotide reductase, all-alpha domain KHQ81_01710 PF04055 Radical SAM superfamily KHQ81_01715 PF00958 GMP synthase C terminal domain KHQ81_01715 PF02540 NAD synthase KHQ81_01715 PF00117 Glutamine amidotransferase class-I KHQ81_01720 PF00478 IMP dehydrogenase / GMP reductase domain KHQ81_01720 PF00571 CBS domain KHQ81_01725 PF16657 Maltogenic Amylase, C-terminal domain KHQ81_01725 PF00128 Alpha amylase, catalytic domain KHQ81_01730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ81_01730 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_01740 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_01750 PF00005 ABC transporter KHQ81_01760 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ81_01760 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ81_01765 PF04309 Glycerol-3-phosphate responsive antiterminator KHQ81_01775 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_01785 PF01694 Rhomboid family KHQ81_01805 PF01047 MarR family KHQ81_01820 PF16491 CAAX prenyl protease N-terminal, five membrane helices KHQ81_01820 PF01435 Peptidase family M48 KHQ81_01825 PF04608 Phosphatidylglycerophosphatase A KHQ81_01835 PF00005 ABC transporter KHQ81_01845 PF00072 Response regulator receiver domain KHQ81_01845 PF00196 Bacterial regulatory proteins, luxR family KHQ81_01850 PF07730 Histidine kinase KHQ81_01865 PF13333 Integrase core domain KHQ81_01865 PF00665 Integrase core domain KHQ81_01865 PF13276 HTH-like domain KHQ81_01870 PF04284 Protein of unknown function (DUF441) KHQ81_01880 PF02073 Thermophilic metalloprotease (M29) KHQ81_01890 PF00011 Hsp20/alpha crystallin family KHQ81_01910 PF00654 Voltage gated chloride channel KHQ81_01915 PF13649 Methyltransferase domain KHQ81_01935 PF09313 Domain of unknown function (DUF1971) KHQ81_01935 PF03848 Tellurite resistance protein TehB KHQ81_01955 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_01965 PF00561 alpha/beta hydrolase fold KHQ81_01970 PF00144 Beta-lactamase KHQ81_01995 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_02000 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_02020 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_02025 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_02035 PF07075 Protein of unknown function (DUF1343) KHQ81_02040 PF01915 Glycosyl hydrolase family 3 C-terminal domain KHQ81_02040 PF00933 Glycosyl hydrolase family 3 N terminal domain KHQ81_02045 PF01869 BadF/BadG/BcrA/BcrD ATPase family KHQ81_02050 PF03702 Anhydro-N-acetylmuramic acid kinase KHQ81_02055 PF13580 SIS domain KHQ81_02060 PF01418 Helix-turn-helix domain, rpiR family KHQ81_02060 PF01380 SIS domain KHQ81_02065 PF02638 Glycosyl hydrolase-like 10 KHQ81_02070 PF01012 Electron transfer flavoprotein domain KHQ81_02075 PF01012 Electron transfer flavoprotein domain KHQ81_02075 PF00766 Electron transfer flavoprotein FAD-binding domain KHQ81_02080 PF02913 FAD linked oxidases, C-terminal domain KHQ81_02080 PF01565 FAD binding domain KHQ81_02095 PF02595 Glycerate kinase family KHQ81_02100 PF01053 Cys/Met metabolism PLP-dependent enzyme KHQ81_02105 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ81_02105 PF14815 NUDIX domain KHQ81_02115 PF13247 4Fe-4S dicluster domain KHQ81_02115 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KHQ81_02115 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_02120 PF00175 Oxidoreductase NAD-binding domain KHQ81_02120 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KHQ81_02125 PF00933 Glycosyl hydrolase family 3 N terminal domain KHQ81_02125 PF01915 Glycosyl hydrolase family 3 C-terminal domain KHQ81_02125 PF14310 Fibronectin type III-like domain KHQ81_02135 PF00128 Alpha amylase, catalytic domain KHQ81_02155 PF00664 ABC transporter transmembrane region KHQ81_02155 PF00005 ABC transporter KHQ81_02160 PF00664 ABC transporter transmembrane region KHQ81_02160 PF00005 ABC transporter KHQ81_02165 PF00664 ABC transporter transmembrane region KHQ81_02165 PF00005 ABC transporter KHQ81_02170 PF00664 ABC transporter transmembrane region KHQ81_02170 PF00005 ABC transporter KHQ81_02180 PF00665 Integrase core domain KHQ81_02180 PF13936 Helix-turn-helix domain KHQ81_02255 PF01975 Survival protein SurE KHQ81_02260 PF00704 Glycosyl hydrolases family 18 KHQ81_02260 PF01476 LysM domain KHQ81_02265 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ81_02265 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ81_02275 PF00440 Bacterial regulatory proteins, tetR family KHQ81_02280 PF02803 Thiolase, C-terminal domain KHQ81_02280 PF00108 Thiolase, N-terminal domain KHQ81_02290 PF00561 alpha/beta hydrolase fold KHQ81_02295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ81_02295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ81_02300 PF02653 Branched-chain amino acid transport system / permease component KHQ81_02310 PF12399 Branched-chain amino acid ATP-binding cassette transporter KHQ81_02310 PF00005 ABC transporter KHQ81_02315 PF00005 ABC transporter KHQ81_02325 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KHQ81_02325 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KHQ81_02330 PF00561 alpha/beta hydrolase fold KHQ81_02335 PF02803 Thiolase, C-terminal domain KHQ81_02335 PF00108 Thiolase, N-terminal domain KHQ81_02340 PF00871 Acetokinase family KHQ81_02345 PF00300 Histidine phosphatase superfamily (branch 1) KHQ81_02350 PF00005 ABC transporter KHQ81_02350 PF08402 TOBE domain KHQ81_02355 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_02360 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_02385 PF01368 DHH family KHQ81_02385 PF02272 DHHA1 domain KHQ81_02390 PF01368 DHH family KHQ81_02390 PF02272 DHHA1 domain KHQ81_02400 PF00149 Calcineurin-like phosphoesterase KHQ81_02400 PF10518 TAT (twin-arginine translocation) pathway signal sequence KHQ81_02410 PF17969 L,D-transpeptidase C-terminal domain KHQ81_02410 PF03734 L,D-transpeptidase catalytic domain KHQ81_02420 PF01252 Signal peptidase (SPase) II KHQ81_02425 PF02687 FtsX-like permease family KHQ81_02425 PF12704 MacB-like periplasmic core domain KHQ81_02425 PF00005 ABC transporter KHQ81_02430 PF00005 ABC transporter KHQ81_02430 PF02687 FtsX-like permease family KHQ81_02430 PF12704 MacB-like periplasmic core domain KHQ81_02440 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_02455 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_02470 PF17783 CvfB-like winged helix domain KHQ81_02470 PF13509 S1 domain KHQ81_02485 PF00005 ABC transporter KHQ81_02505 PF08486 Stage II sporulation protein KHQ81_02525 PF02653 Branched-chain amino acid transport system / permease component KHQ81_02530 PF00005 ABC transporter KHQ81_02530 PF08402 TOBE domain KHQ81_02550 PF01869 BadF/BadG/BcrA/BcrD ATPase family KHQ81_02570 PF01924 Hydrogenase formation hypA family KHQ81_02575 PF01380 SIS domain KHQ81_02595 PF01381 Helix-turn-helix KHQ81_02600 PF00005 ABC transporter KHQ81_02645 PF02556 Preprotein translocase subunit SecB KHQ81_02655 PF00005 ABC transporter KHQ81_02695 PF01381 Helix-turn-helix KHQ81_02705 PF12833 Helix-turn-helix domain KHQ81_02720 PF00005 ABC transporter KHQ81_02725 PF00005 ABC transporter KHQ81_02725 PF13732 Domain of unknown function (DUF4162) KHQ81_02740 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KHQ81_02745 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KHQ81_02770 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase KHQ81_02780 PF01545 Cation efflux family KHQ81_02780 PF16916 Dimerisation domain of Zinc Transporter KHQ81_02800 PF02742 Iron dependent repressor, metal binding and dimerisation domain KHQ81_02800 PF01325 Iron dependent repressor, N-terminal DNA binding domain KHQ81_02840 PF02675 S-adenosylmethionine decarboxylase KHQ81_02845 PF17284 Spermidine synthase tetramerisation domain KHQ81_02855 PF00293 NUDIX domain KHQ81_02865 PF15975 Flotillin KHQ81_02865 PF01145 SPFH domain / Band 7 family KHQ81_02920 PF00665 Integrase core domain KHQ81_02920 PF13333 Integrase core domain KHQ81_02920 PF13276 HTH-like domain KHQ81_02945 PF03061 Thioesterase superfamily KHQ81_02970 PF00849 RNA pseudouridylate synthase KHQ81_02970 PF01479 S4 domain KHQ81_02975 PF00924 Mechanosensitive ion channel KHQ81_02975 PF05552 Conserved TM helix KHQ81_02980 PF12450 von Willebrand factor KHQ81_02980 PF12034 Domain of unknown function (DUF3520) KHQ81_02980 PF00092 von Willebrand factor type A domain KHQ81_02990 PF10672 S-adenosylmethionine-dependent methyltransferase KHQ81_02990 PF17785 PUA-like domain KHQ81_03000 PF01475 Ferric uptake regulator family KHQ81_03005 PF00950 ABC 3 transport family KHQ81_03010 PF00005 ABC transporter KHQ81_03015 PF01297 Zinc-uptake complex component A periplasmic KHQ81_03025 PF17876 Cold shock domain KHQ81_03025 PF08206 Ribonuclease B OB domain KHQ81_03025 PF00773 RNB domain KHQ81_03025 PF00575 S1 RNA binding domain KHQ81_03040 PF13180 PDZ domain KHQ81_03045 PF01022 Bacterial regulatory protein, arsR family KHQ81_03050 PF00403 Heavy-metal-associated domain KHQ81_03060 PF01497 Periplasmic binding protein KHQ81_03065 PF00483 Nucleotidyl transferase KHQ81_03070 PF04101 Glycosyltransferase family 28 C-terminal domain KHQ81_03070 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase KHQ81_03075 PF02631 RecX family KHQ81_03080 PF00128 Alpha amylase, catalytic domain KHQ81_03080 PF02806 Alpha amylase, C-terminal all-beta domain KHQ81_03080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ81_03085 PF00483 Nucleotidyl transferase KHQ81_03090 PF08323 Starch synthase catalytic domain KHQ81_03090 PF00534 Glycosyl transferases group 1 KHQ81_03095 PF00343 Carbohydrate phosphorylase KHQ81_03100 PF00128 Alpha amylase, catalytic domain KHQ81_03100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ81_03100 PF17999 Pullulanase N1-terminal domain KHQ81_03120 PF02583 Metal-sensitive transcriptional repressor KHQ81_03125 PF04055 Radical SAM superfamily KHQ81_03130 PF01336 OB-fold nucleic acid binding domain KHQ81_03130 PF01966 HD domain KHQ81_03135 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ81_03155 PF00005 ABC transporter KHQ81_03160 PF00571 CBS domain KHQ81_03160 PF01368 DHH family KHQ81_03160 PF02833 DHHA2 domain KHQ81_03160 PF07085 DRTGG domain KHQ81_03170 PF04060 Putative Fe-S cluster KHQ81_03200 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ81_03200 PF00037 4Fe-4S binding domain KHQ81_03200 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KHQ81_03205 PF02906 Iron only hydrogenase large subunit, C-terminal domain KHQ81_03205 PF02256 Iron hydrogenase small subunit KHQ81_03205 PF00037 4Fe-4S binding domain KHQ81_03205 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KHQ81_03210 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KHQ81_03210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ81_03210 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KHQ81_03210 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KHQ81_03210 PF10371 Domain of unknown function KHQ81_03215 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_03220 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_03220 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ81_03225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_03225 PF00005 ABC transporter KHQ81_03230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_03230 PF00005 ABC transporter KHQ81_03235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ81_03240 PF00005 ABC transporter KHQ81_03245 PF01458 Uncharacterized protein family (UPF0051) KHQ81_03250 PF00266 Aminotransferase class-V KHQ81_03255 PF01592 NifU-like N terminal domain KHQ81_03260 PF01458 Uncharacterized protein family (UPF0051) KHQ81_03265 PF07690 Major Facilitator Superfamily KHQ81_03270 PF01812 5-formyltetrahydrofolate cyclo-ligase family KHQ81_03275 PF00571 CBS domain KHQ81_03280 PF08827 Domain of unknown function (DUF1805) KHQ81_03285 PF09560 Sporulation protein YunB (Spo_YunB) KHQ81_03295 PF13344 Haloacid dehalogenase-like hydrolase KHQ81_03305 PF03600 Citrate transporter KHQ81_03315 PF01678 Diaminopimelate epimerase KHQ81_03320 PF01106 NifU-like domain KHQ81_03330 PF04608 Phosphatidylglycerophosphatase A KHQ81_03335 PF02681 Divergent PAP2 family KHQ81_03340 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_03345 PF00575 S1 RNA binding domain KHQ81_03350 PF00342 Phosphoglucose isomerase KHQ81_03355 PF01520 N-acetylmuramoyl-L-alanine amidase KHQ81_03360 PF00753 Metallo-beta-lactamase superfamily KHQ81_03360 PF00258 Flavodoxin KHQ81_03370 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KHQ81_03375 PF00814 Glycoprotease family KHQ81_03380 PF00583 Acetyltransferase (GNAT) family KHQ81_03385 PF03714 Bacterial pullanase-associated domain KHQ81_03385 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ81_03385 PF00128 Alpha amylase, catalytic domain KHQ81_03390 PF00814 Glycoprotease family KHQ81_03400 PF01471 Putative peptidoglycan binding domain KHQ81_03400 PF01510 N-acetylmuramoyl-L-alanine amidase KHQ81_03415 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_03420 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_03420 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ81_03425 PF00005 ABC transporter KHQ81_03425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_03430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_03430 PF00005 ABC transporter KHQ81_03440 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KHQ81_03440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KHQ81_03445 PF00941 FAD binding domain in molybdopterin dehydrogenase KHQ81_03445 PF03450 CO dehydrogenase flavoprotein C-terminal domain KHQ81_03450 PF00111 2Fe-2S iron-sulfur cluster binding domain KHQ81_03450 PF01799 [2Fe-2S] binding domain KHQ81_03455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ81_03455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ81_03460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KHQ81_03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_03465 PF01979 Amidohydrolase family KHQ81_03470 PF00440 Bacterial regulatory proteins, tetR family KHQ81_03480 PF01546 Peptidase family M20/M25/M40 KHQ81_03480 PF07687 Peptidase dimerisation domain KHQ81_03485 PF00291 Pyridoxal-phosphate dependent enzyme KHQ81_03495 PF01979 Amidohydrolase family KHQ81_03500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KHQ81_03500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KHQ81_03505 PF01979 Amidohydrolase family KHQ81_03510 PF13382 Adenine deaminase C-terminal domain KHQ81_03510 PF01979 Amidohydrolase family KHQ81_03515 PF00941 FAD binding domain in molybdopterin dehydrogenase KHQ81_03515 PF03450 CO dehydrogenase flavoprotein C-terminal domain KHQ81_03520 PF00111 2Fe-2S iron-sulfur cluster binding domain KHQ81_03520 PF01799 [2Fe-2S] binding domain KHQ81_03525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KHQ81_03525 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KHQ81_03530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KHQ81_03535 PF01022 Bacterial regulatory protein, arsR family KHQ81_03560 PF01871 AMMECR1 KHQ81_03560 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KHQ81_03575 PF01979 Amidohydrolase family KHQ81_03590 PF12848 ABC transporter KHQ81_03590 PF00005 ABC transporter KHQ81_03590 PF16326 ABC transporter C-terminal domain KHQ81_03595 PF02629 CoA binding domain KHQ81_03595 PF06971 Putative DNA-binding protein N-terminus KHQ81_03600 PF00166 Chaperonin 10 Kd subunit KHQ81_03605 PF00118 TCP-1/cpn60 chaperonin family KHQ81_03630 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ81_03630 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KHQ81_03635 PF00924 Mechanosensitive ion channel KHQ81_03640 PF13361 UvrD-like helicase C-terminal domain KHQ81_03640 PF00580 UvrD/REP helicase N-terminal domain KHQ81_03645 PF09515 Thiamine transporter protein (Thia_YuaJ) KHQ81_03655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KHQ81_03660 PF01168 Alanine racemase, N-terminal domain KHQ81_03660 PF00842 Alanine racemase, C-terminal domain KHQ81_03665 PF06962 Putative rRNA methylase KHQ81_03670 PF04055 Radical SAM superfamily KHQ81_03670 PF16199 Radical_SAM C-terminal domain KHQ81_03680 PF13603 Leucyl-tRNA synthetase, Domain 2 KHQ81_03680 PF00133 tRNA synthetases class I (I, L, M and V) KHQ81_03680 PF09334 tRNA synthetases class I (M) KHQ81_03680 PF08264 Anticodon-binding domain of tRNA KHQ81_03685 PF02875 Mur ligase family, glutamate ligase domain KHQ81_03685 PF01225 Mur ligase family, catalytic domain KHQ81_03685 PF08245 Mur ligase middle domain KHQ81_03690 PF05670 NFACT protein RNA binding domain KHQ81_03695 PF00625 Guanylate kinase KHQ81_03700 PF01192 RNA polymerase Rpb6 KHQ81_03705 PF00271 Helicase conserved C-terminal domain KHQ81_03705 PF17764 3′ DNA-binding domain (3′BD) KHQ81_03705 PF18074 Primosomal protein N C-terminal domain KHQ81_03705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KHQ81_03705 PF04851 Type III restriction enzyme, res subunit KHQ81_03710 PF00551 Formyl transferase KHQ81_03710 PF02911 Formyl transferase, C-terminal domain KHQ81_03715 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ81_03725 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ81_03725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ81_03730 PF10957 Sporulation protein Cse60 KHQ81_03735 PF01784 NIF3 (NGG1p interacting factor 3) KHQ81_03740 PF01189 16S rRNA methyltransferase RsmB/F KHQ81_03740 PF01029 NusB family KHQ81_03745 PF08000 Bacterial PH domain KHQ81_03755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_03775 PF04055 Radical SAM superfamily KHQ81_03780 PF03193 RsgA GTPase KHQ81_03780 PF16745 RsgA N-terminal domain KHQ81_03785 PF00834 Ribulose-phosphate 3 epimerase family KHQ81_03790 PF04263 Thiamin pyrophosphokinase, catalytic domain KHQ81_03790 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain KHQ81_03800 PF12146 Serine aminopeptidase, S33 KHQ81_03805 PF00830 Ribosomal L28 family KHQ81_03810 PF03780 Asp23 family, cell envelope-related function KHQ81_03815 PF02734 DAK2 domain KHQ81_03815 PF13684 Dihydroxyacetone kinase family KHQ81_03820 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_03825 PF00550 Phosphopantetheine attachment site KHQ81_03830 PF00364 Biotin-requiring enzyme KHQ81_03835 PF00289 Biotin carboxylase, N-terminal domain KHQ81_03835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ81_03835 PF02785 Biotin carboxylase C-terminal domain KHQ81_03840 PF01039 Carboxyl transferase domain KHQ81_03840 PF17848 Acetyl-coA carboxylase zinc finger domain KHQ81_03845 PF17848 Acetyl-coA carboxylase zinc finger domain KHQ81_03845 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KHQ81_03855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ81_03855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ81_03860 PF03060 Nitronate monooxygenase KHQ81_03865 PF00698 Acyl transferase domain KHQ81_03875 PF00109 Beta-ketoacyl synthase, N-terminal domain KHQ81_03875 PF02801 Beta-ketoacyl synthase, C-terminal domain KHQ81_03880 PF07977 FabA-like domain KHQ81_03885 PF08279 HTH domain KHQ81_03885 PF03099 Biotin/lipoate A/B protein ligase family KHQ81_03885 PF02237 Biotin protein ligase C terminal domain KHQ81_03890 PF02632 BioY family KHQ81_03900 PF00480 ROK family KHQ81_03905 PF01380 SIS domain KHQ81_03905 PF01418 Helix-turn-helix domain, rpiR family KHQ81_03915 PF00270 DEAD/DEAH box helicase KHQ81_03915 PF00271 Helicase conserved C-terminal domain KHQ81_03915 PF17191 RecG wedge domain KHQ81_03920 PF13302 Acetyltransferase (GNAT) domain KHQ81_03925 PF02504 Fatty acid synthesis protein KHQ81_03930 PF14622 Ribonuclease-III-like KHQ81_03930 PF00035 Double-stranded RNA binding motif KHQ81_03935 PF06470 SMC proteins Flexible Hinge Domain KHQ81_03935 PF02463 RecF/RecN/SMC N terminal domain KHQ81_03940 PF00448 SRP54-type protein, GTPase domain KHQ81_03940 PF02881 SRP54-type protein, helical bundle domain KHQ81_03945 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KHQ81_03950 PF02978 Signal peptide binding domain KHQ81_03950 PF00448 SRP54-type protein, GTPase domain KHQ81_03950 PF02881 SRP54-type protein, helical bundle domain KHQ81_03960 PF01906 Putative heavy-metal-binding KHQ81_03970 PF00664 ABC transporter transmembrane region KHQ81_03970 PF00005 ABC transporter KHQ81_03975 PF00005 ABC transporter KHQ81_03975 PF00664 ABC transporter transmembrane region KHQ81_04040 PF13333 Integrase core domain KHQ81_04040 PF13276 HTH-like domain KHQ81_04040 PF00665 Integrase core domain KHQ81_04055 PF01467 Cytidylyltransferase-like KHQ81_04070 PF07664 Ferrous iron transport protein B C terminus KHQ81_04070 PF17910 FeoB cytosolic helical domain KHQ81_04070 PF02421 Ferrous iron transport protein B KHQ81_04070 PF07670 Nucleoside recognition KHQ81_04075 PF05857 TraX protein KHQ81_04080 PF00128 Alpha amylase, catalytic domain KHQ81_04085 PF02517 CPBP intramembrane metalloprotease KHQ81_04090 PF00072 Response regulator receiver domain KHQ81_04090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_04090 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_04090 PF18415 Histidine kinase receptor ArcB trans-membrane domain KHQ81_04090 PF01627 Hpt domain KHQ81_04090 PF00989 PAS fold KHQ81_04095 PF00563 EAL domain KHQ81_04095 PF00990 Diguanylate cyclase, GGDEF domain KHQ81_04095 PF00360 Phytochrome region KHQ81_04095 PF01590 GAF domain KHQ81_04100 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ81_04105 PF02308 MgtC family KHQ81_04125 PF02028 BCCT, betaine/carnitine/choline family transporter KHQ81_04140 PF01134 Glucose inhibited division protein A KHQ81_04145 PF00589 Phage integrase family KHQ81_04145 PF02899 Phage integrase, N-terminal SAM-like domain KHQ81_04150 PF00692 dUTPase KHQ81_04155 PF00318 Ribosomal protein S2 KHQ81_04160 PF00889 Elongation factor TS KHQ81_04165 PF00696 Amino acid kinase family KHQ81_04170 PF01765 Ribosome recycling factor KHQ81_04190 PF01255 Putative undecaprenyl diphosphate synthase KHQ81_04200 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KHQ81_04200 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KHQ81_04200 PF13288 DXP reductoisomerase C-terminal domain KHQ81_04205 PF02163 Peptidase family M50 KHQ81_04205 PF17820 PDZ domain KHQ81_04210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ81_04210 PF04073 Aminoacyl-tRNA editing domain KHQ81_04210 PF03129 Anticodon binding domain KHQ81_04235 PF00144 Beta-lactamase KHQ81_04240 PF02773 S-adenosylmethionine synthetase, C-terminal domain KHQ81_04240 PF02772 S-adenosylmethionine synthetase, central domain KHQ81_04240 PF00438 S-adenosylmethionine synthetase, N-terminal domain KHQ81_04245 PF00753 Metallo-beta-lactamase superfamily KHQ81_04245 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ81_04245 PF17770 Ribonuclease J C-terminal domain KHQ81_04260 PF00300 Histidine phosphatase superfamily (branch 1) KHQ81_04265 PF01327 Polypeptide deformylase KHQ81_04295 PF08241 Methyltransferase domain KHQ81_04320 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KHQ81_04325 PF00886 Ribosomal protein S16 KHQ81_04335 PF01594 AI-2E family transporter KHQ81_04340 PF05239 PRC-barrel domain KHQ81_04340 PF01782 RimM N-terminal domain KHQ81_04345 PF01746 tRNA (Guanine-1)-methyltransferase KHQ81_04350 PF01245 Ribosomal protein L19 KHQ81_04355 PF10502 Signal peptidase, peptidase S26 KHQ81_04360 PF01926 50S ribosome-binding GTPase KHQ81_04375 PF01351 Ribonuclease HII KHQ81_04380 PF02481 DNA recombination-mediator protein A KHQ81_04380 PF18255 DNA processing protein A sterile alpha motif domain KHQ81_04385 PF01131 DNA topoisomerase KHQ81_04385 PF01751 Toprim domain KHQ81_04385 PF01396 Topoisomerase DNA binding C4 zinc finger KHQ81_04400 PF13307 Helicase C-terminal domain KHQ81_04400 PF00929 Exonuclease KHQ81_04405 PF04286 Protein of unknown function (DUF445) KHQ81_04415 PF05343 M42 glutamyl aminopeptidase KHQ81_04425 PF14098 Small, acid-soluble spore protein I KHQ81_04440 PF01409 tRNA synthetases class II core domain (F) KHQ81_04440 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KHQ81_04445 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KHQ81_04445 PF03483 B3/4 domain KHQ81_04445 PF03147 Ferredoxin-fold anticodon binding domain KHQ81_04445 PF01588 Putative tRNA binding domain KHQ81_04445 PF03484 tRNA synthetase B5 domain KHQ81_04450 PF18801 response regulator aspartate phosphatase H, N terminal KHQ81_04465 PF00588 SpoU rRNA Methylase family KHQ81_04465 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ81_04470 PF02576 RimP N-terminal domain KHQ81_04470 PF17384 RimP C-terminal SH3 domain KHQ81_04475 PF00575 S1 RNA binding domain KHQ81_04475 PF08529 NusA N-terminal domain KHQ81_04475 PF13184 NusA-like KH domain KHQ81_04480 PF04296 Protein of unknown function (DUF448) KHQ81_04485 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KHQ81_04490 PF00009 Elongation factor Tu GTP binding domain KHQ81_04490 PF11987 Translation-initiation factor 2 KHQ81_04490 PF04760 Translation initiation factor IF-2, N-terminal region KHQ81_04495 PF02033 Ribosome-binding factor A KHQ81_04510 PF08459 UvrC Helix-hairpin-helix N-terminal KHQ81_04510 PF02151 UvrB/uvrC motif KHQ81_04510 PF01541 GIY-YIG catalytic domain KHQ81_04515 PF00196 Bacterial regulatory proteins, luxR family KHQ81_04525 PF01177 Asp/Glu/Hydantoin racemase KHQ81_04535 PF01138 3' exoribonuclease family, domain 1 KHQ81_04535 PF03725 3' exoribonuclease family, domain 2 KHQ81_04540 PF01725 Ham1 family KHQ81_04595 PF01841 Transglutaminase-like superfamily KHQ81_04595 PF08379 Bacterial transglutaminase-like N-terminal region KHQ81_04620 PF01610 Transposase KHQ81_04620 PF13683 Integrase core domain KHQ81_04650 PF01381 Helix-turn-helix KHQ81_04690 PF03372 Endonuclease/Exonuclease/phosphatase family KHQ81_04695 PF01571 Aminomethyltransferase folate-binding domain KHQ81_04695 PF08669 Glycine cleavage T-protein C-terminal barrel domain KHQ81_04695 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_04695 PF17806 Sarcosine oxidase A3 domain KHQ81_04700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KHQ81_04700 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_04715 PF01266 FAD dependent oxidoreductase KHQ81_04720 PF00171 Aldehyde dehydrogenase family KHQ81_04730 PF04439 Streptomycin adenylyltransferase KHQ81_04740 PF01256 Carbohydrate kinase KHQ81_04740 PF03853 YjeF-related protein N-terminus KHQ81_04745 PF00561 alpha/beta hydrolase fold KHQ81_04760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KHQ81_04760 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ81_04760 PF05697 Bacterial trigger factor protein (TF) KHQ81_04765 PF07724 AAA domain (Cdc48 subfamily) KHQ81_04765 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ81_04765 PF06689 ClpX C4-type zinc finger KHQ81_04770 PF02190 ATP-dependent protease La (LON) substrate-binding domain KHQ81_04770 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ81_04770 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_04775 PF01926 50S ribosome-binding GTPase KHQ81_04780 PF01479 S4 domain KHQ81_04780 PF00849 RNA pseudouridylate synthase KHQ81_04790 PF13091 PLD-like domain KHQ81_04790 PF13396 Phospholipase_D-nuclease N-terminal KHQ81_04795 PF10609 NUBPL iron-transfer P-loop NTPase KHQ81_04800 PF05636 HIGH Nucleotidyl Transferase KHQ81_04805 PF02620 Large ribosomal RNA subunit accumulation protein YceD KHQ81_04810 PF01783 Ribosomal L32p protein family KHQ81_04815 PF00990 Diguanylate cyclase, GGDEF domain KHQ81_04815 PF08448 PAS fold KHQ81_04820 PF01791 DeoC/LacD family aldolase KHQ81_04825 PF01048 Phosphorylase superfamily KHQ81_04835 PF05193 Peptidase M16 inactive domain KHQ81_04835 PF00675 Insulinase (Peptidase family M16) KHQ81_04840 PF00303 Thymidylate synthase KHQ81_04845 PF00186 Dihydrofolate reductase KHQ81_04865 PF08264 Anticodon-binding domain of tRNA KHQ81_04865 PF10458 Valyl tRNA synthetase tRNA binding arm KHQ81_04865 PF00133 tRNA synthetases class I (I, L, M and V) KHQ81_04875 PF03956 Lysine exporter LysO KHQ81_04880 PF03190 Protein of unknown function, DUF255 KHQ81_04885 PF11599 RRNA methyltransferase AviRa KHQ81_04930 PF01209 ubiE/COQ5 methyltransferase family KHQ81_04970 PF08468 Methyltransferase small domain N-terminal KHQ81_04970 PF05175 Methyltransferase small domain KHQ81_04980 PF01554 MatE KHQ81_05000 PF13333 Integrase core domain KHQ81_05000 PF00665 Integrase core domain KHQ81_05000 PF13276 HTH-like domain KHQ81_05025 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_05030 PF00486 Transcriptional regulatory protein, C terminal KHQ81_05030 PF00072 Response regulator receiver domain KHQ81_05045 PF02770 Acyl-CoA dehydrogenase, middle domain KHQ81_05045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KHQ81_05045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KHQ81_05050 PF01012 Electron transfer flavoprotein domain KHQ81_05055 PF01012 Electron transfer flavoprotein domain KHQ81_05055 PF00766 Electron transfer flavoprotein FAD-binding domain KHQ81_05085 PF05979 Bacterial protein of unknown function (DUF896) KHQ81_05090 PF13649 Methyltransferase domain KHQ81_05095 PF04304 Protein of unknown function (DUF454) KHQ81_05100 PF00258 Flavodoxin KHQ81_05115 PF01734 Patatin-like phospholipase KHQ81_05140 PF00571 CBS domain KHQ81_05140 PF08279 HTH domain KHQ81_05145 PF03618 Kinase/pyrophosphorylase KHQ81_05150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KHQ81_05150 PF00391 PEP-utilising enzyme, mobile domain KHQ81_05150 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ81_05160 PF01212 Beta-eliminating lyase KHQ81_05175 PF03061 Thioesterase superfamily KHQ81_05180 PF05853 beta-keto acid cleavage enzyme KHQ81_05190 PF12544 Lysine-2,3-aminomutase KHQ81_05190 PF04055 Radical SAM superfamily KHQ81_05200 PF01624 MutS domain I KHQ81_05200 PF00488 MutS domain V KHQ81_05200 PF05188 MutS domain II KHQ81_05200 PF05192 MutS domain III KHQ81_05200 PF05190 MutS family domain IV KHQ81_05205 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit KHQ81_05210 PF02310 B12 binding domain KHQ81_05210 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase KHQ81_05215 PF00378 Enoyl-CoA hydratase/isomerase KHQ81_05220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KHQ81_05220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KHQ81_05225 PF01144 Coenzyme A transferase KHQ81_05230 PF01144 Coenzyme A transferase KHQ81_05245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ81_05245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ81_05250 PF00696 Amino acid kinase family KHQ81_05265 PF00291 Pyridoxal-phosphate dependent enzyme KHQ81_05270 PF16552 D-ornithine 4,5-aminomutase alpha-subunit KHQ81_05275 PF02310 B12 binding domain KHQ81_05275 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit KHQ81_05275 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase KHQ81_05285 PF01168 Alanine racemase, N-terminal domain KHQ81_05300 PF01523 Putative modulator of DNA gyrase KHQ81_05305 PF01523 Putative modulator of DNA gyrase KHQ81_05320 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KHQ81_05320 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KHQ81_05350 PF00080 Copper/zinc superoxide dismutase (SODC) KHQ81_05355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KHQ81_05355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ81_05360 PF13280 WYL domain KHQ81_05360 PF08279 HTH domain KHQ81_05365 PF01131 DNA topoisomerase KHQ81_05365 PF01751 Toprim domain KHQ81_05375 PF00581 Rhodanese-like domain KHQ81_05385 PF01709 Transcriptional regulator KHQ81_05390 PF00009 Elongation factor Tu GTP binding domain KHQ81_05390 PF03144 Elongation factor Tu domain 2 KHQ81_05390 PF14492 Elongation Factor G, domain II KHQ81_05390 PF00679 Elongation factor G C-terminus KHQ81_05410 PF03551 Transcriptional regulator PadR-like family KHQ81_05430 PF02659 Putative manganese efflux pump KHQ81_05435 PF10531 SLBB domain KHQ81_05435 PF13375 RnfC Barrel sandwich hybrid domain KHQ81_05435 PF13237 4Fe-4S dicluster domain KHQ81_05435 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ81_05445 PF03116 NQR2, RnfD, RnfE family KHQ81_05450 PF04205 FMN-binding domain KHQ81_05455 PF02508 Rnf-Nqr subunit, membrane protein KHQ81_05460 PF02508 Rnf-Nqr subunit, membrane protein KHQ81_05485 PF02583 Metal-sensitive transcriptional repressor KHQ81_05490 PF00403 Heavy-metal-associated domain KHQ81_05505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ81_05510 PF13180 PDZ domain KHQ81_05510 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ81_05515 PF01252 Signal peptidase (SPase) II KHQ81_05520 PF01479 S4 domain KHQ81_05520 PF00849 RNA pseudouridylate synthase KHQ81_05540 PF02562 PhoH-like protein KHQ81_05545 PF02130 Uncharacterized protein family UPF0054 KHQ81_05550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ81_05555 PF01926 50S ribosome-binding GTPase KHQ81_05555 PF07650 KH domain KHQ81_05565 PF11967 Recombination protein O N terminal KHQ81_05565 PF02565 Recombination protein O C terminal KHQ81_05570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ81_05570 PF03129 Anticodon binding domain KHQ81_05575 PF01807 CHC2 zinc finger KHQ81_05575 PF08275 DNA primase catalytic core, N-terminal domain KHQ81_05575 PF13662 Toprim domain KHQ81_05575 PF00772 DnaB-like helicase N terminal domain KHQ81_05580 PF04545 Sigma-70, region 4 KHQ81_05580 PF04539 Sigma-70 region 3 KHQ81_05580 PF04542 Sigma-70 region 2 KHQ81_05580 PF03979 Sigma-70 factor, region 1.1 KHQ81_05580 PF00140 Sigma-70 factor, region 1.2 KHQ81_05585 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KHQ81_05590 PF02401 LytB protein KHQ81_05595 PF00271 Helicase conserved C-terminal domain KHQ81_05595 PF00270 DEAD/DEAH box helicase KHQ81_05600 PF01261 Xylose isomerase-like TIM barrel KHQ81_05640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KHQ81_05640 PF00437 Type II/IV secretion system protein KHQ81_05645 PF00482 Type II secretion system (T2SS), protein F KHQ81_05655 PF06750 Bacterial Peptidase A24 N-terminal domain KHQ81_05655 PF01478 Type IV leader peptidase family KHQ81_05675 PF04551 GcpE protein KHQ81_05680 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KHQ81_05680 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KHQ81_05685 PF00471 Ribosomal protein L33 KHQ81_05690 PF00480 ROK family KHQ81_05695 PF00753 Metallo-beta-lactamase superfamily KHQ81_05700 PF00665 Integrase core domain KHQ81_05700 PF13333 Integrase core domain KHQ81_05700 PF13276 HTH-like domain KHQ81_05705 PF00437 Type II/IV secretion system protein KHQ81_05715 PF07963 Prokaryotic N-terminal methylation motif KHQ81_05740 PF01202 Shikimate kinase KHQ81_05755 PF01220 Dehydroquinase class II KHQ81_05760 PF08207 Elongation factor P (EF-P) KOW-like domain KHQ81_05760 PF01132 Elongation factor P (EF-P) OB domain KHQ81_05760 PF09285 Elongation factor P, C-terminal KHQ81_05770 PF03780 Asp23 family, cell envelope-related function KHQ81_05775 PF01029 NusB family KHQ81_05780 PF13742 OB-fold nucleic acid binding domain KHQ81_05780 PF02601 Exonuclease VII, large subunit KHQ81_05785 PF02609 Exonuclease VII small subunit KHQ81_05790 PF00348 Polyprenyl synthetase KHQ81_05795 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KHQ81_05795 PF02779 Transketolase, pyrimidine binding domain KHQ81_05795 PF02780 Transketolase, C-terminal domain KHQ81_05800 PF01728 FtsJ-like methyltransferase KHQ81_05800 PF01479 S4 domain KHQ81_05805 PF13476 AAA domain KHQ81_05810 PF05580 SpoIVB peptidase S55 KHQ81_05810 PF17820 PDZ domain KHQ81_05815 PF08769 Sporulation initiation factor Spo0A C terminal KHQ81_05815 PF00072 Response regulator receiver domain KHQ81_05825 PF00817 impB/mucB/samB family KHQ81_05825 PF11799 impB/mucB/samB family C-terminal domain KHQ81_05825 PF11798 IMS family HHH motif KHQ81_05830 PF00106 short chain dehydrogenase KHQ81_05840 PF01475 Ferric uptake regulator family KHQ81_05845 PF02899 Phage integrase, N-terminal SAM-like domain KHQ81_05845 PF00589 Phage integrase family KHQ81_05850 PF01676 Metalloenzyme superfamily KHQ81_05855 PF04434 SWIM zinc finger KHQ81_05855 PF00176 SNF2 family N-terminal domain KHQ81_05855 PF00271 Helicase conserved C-terminal domain KHQ81_05860 PF01554 MatE KHQ81_05865 PF00210 Ferritin-like domain KHQ81_05870 PF13416 Bacterial extracellular solute-binding protein KHQ81_05875 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_05880 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_05885 PF00005 ABC transporter KHQ81_05885 PF08402 TOBE domain KHQ81_05895 PF08241 Methyltransferase domain KHQ81_05940 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ81_05940 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ81_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_05945 PF01751 Toprim domain KHQ81_05945 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ81_05945 PF00204 DNA gyrase B KHQ81_05950 PF02660 Glycerol-3-phosphate acyltransferase KHQ81_05985 PF00440 Bacterial regulatory proteins, tetR family KHQ81_05985 PF13977 BetI-type transcriptional repressor, C-terminal KHQ81_05995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ81_05995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ81_06000 PF00230 Major intrinsic protein KHQ81_06015 PF13936 Helix-turn-helix domain KHQ81_06015 PF00665 Integrase core domain KHQ81_06020 PF13333 Integrase core domain KHQ81_06020 PF00665 Integrase core domain KHQ81_06020 PF13276 HTH-like domain KHQ81_06045 PF03691 Uncharacterised protein family (UPF0167) KHQ81_06095 PF12704 MacB-like periplasmic core domain KHQ81_06095 PF02687 FtsX-like permease family KHQ81_06095 PF00005 ABC transporter KHQ81_06100 PF00005 ABC transporter KHQ81_06245 PF01695 IstB-like ATP binding protein KHQ81_06250 PF00665 Integrase core domain KHQ81_06255 PF14659 Phage integrase, N-terminal SAM-like domain KHQ81_06255 PF00589 Phage integrase family KHQ81_06260 PF01695 IstB-like ATP binding protein KHQ81_06270 PF00665 Integrase core domain KHQ81_06360 PF04002 RadC-like JAB domain KHQ81_06395 PF12008 Type I restriction and modification enzyme - subunit R C terminal KHQ81_06395 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KHQ81_06395 PF18766 SWI2/SNF2 ATPase KHQ81_06400 PF02384 N-6 DNA Methylase KHQ81_06400 PF12161 HsdM N-terminal domain KHQ81_06415 PF01470 Pyroglutamyl peptidase KHQ81_06465 PF00266 Aminotransferase class-V KHQ81_06470 PF13411 MerR HTH family regulatory protein KHQ81_06495 PF02654 Cobalamin-5-phosphate synthase KHQ81_06505 PF00300 Histidine phosphatase superfamily (branch 1) KHQ81_06510 PF00171 Aldehyde dehydrogenase family KHQ81_06510 PF00465 Iron-containing alcohol dehydrogenase KHQ81_06530 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ81_06530 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ81_06535 PF00106 short chain dehydrogenase KHQ81_06555 PF10127 RNA repair pathway DNA polymerase beta family KHQ81_06585 PF03880 DbpA RNA binding domain KHQ81_06585 PF00270 DEAD/DEAH box helicase KHQ81_06585 PF00271 Helicase conserved C-terminal domain KHQ81_06595 PF00005 ABC transporter KHQ81_06635 PF13520 Amino acid permease KHQ81_06645 PF00005 ABC transporter KHQ81_06650 PF02371 Transposase IS116/IS110/IS902 family KHQ81_06650 PF01548 Transposase KHQ81_06655 PF00672 HAMP domain KHQ81_06655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_06655 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_06660 PF00072 Response regulator receiver domain KHQ81_06660 PF00486 Transcriptional regulatory protein, C terminal KHQ81_06680 PF03672 Uncharacterised protein family (UPF0154) KHQ81_06685 PF00456 Transketolase, thiamine diphosphate binding domain KHQ81_06685 PF02780 Transketolase, C-terminal domain KHQ81_06685 PF02779 Transketolase, pyrimidine binding domain KHQ81_06690 PF00037 4Fe-4S binding domain KHQ81_06695 PF01726 LexA DNA binding domain KHQ81_06695 PF00717 Peptidase S24-like KHQ81_06700 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_06700 PF17866 AAA lid domain KHQ81_06705 PF00009 Elongation factor Tu GTP binding domain KHQ81_06705 PF06421 GTP-binding protein LepA C-terminus KHQ81_06705 PF03144 Elongation factor Tu domain 2 KHQ81_06705 PF00679 Elongation factor G C-terminus KHQ81_06715 PF03418 Germination protease KHQ81_06720 PF01649 Ribosomal protein S20 KHQ81_06725 PF06144 DNA polymerase III, delta subunit KHQ81_06750 PF13649 Methyltransferase domain KHQ81_06765 PF01985 CRS1 / YhbY (CRM) domain KHQ81_06770 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KHQ81_06770 PF01488 Shikimate / quinate 5-dehydrogenase KHQ81_06770 PF08501 Shikimate dehydrogenase substrate binding domain KHQ81_06775 PF01926 50S ribosome-binding GTPase KHQ81_06785 PF04542 Sigma-70 region 2 KHQ81_06785 PF04545 Sigma-70, region 4 KHQ81_06795 PF01048 Phosphorylase superfamily KHQ81_06800 PF03449 Transcription elongation factor, N-terminal KHQ81_06800 PF01272 Transcription elongation factor, GreA/GreB, C-term KHQ81_06805 PF00485 Phosphoribulokinase / Uridine kinase family KHQ81_06810 PF16325 Peptidase family U32 C-terminal domain KHQ81_06810 PF01136 Peptidase family U32 KHQ81_06815 PF01136 Peptidase family U32 KHQ81_06880 PF01596 O-methyltransferase KHQ81_06890 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ81_06890 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ81_06895 PF01047 MarR family KHQ81_06900 PF07690 Major Facilitator Superfamily KHQ81_06905 PF04101 Glycosyltransferase family 28 C-terminal domain KHQ81_06905 PF03033 Glycosyltransferase family 28 N-terminal domain KHQ81_06910 PF06949 Protein of unknown function (DUF1292) KHQ81_06915 PF03652 Holliday junction resolvase KHQ81_06920 PF01411 tRNA synthetases class II (A) KHQ81_06920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ81_06920 PF02272 DHHA1 domain KHQ81_06925 PF01594 AI-2E family transporter KHQ81_06935 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KHQ81_06935 PF13538 UvrD-like helicase C-terminal domain KHQ81_06935 PF14490 Helix-hairpin-helix containing domain KHQ81_06945 PF16193 AAA C-terminal domain KHQ81_06945 PF12002 MgsA AAA+ ATPase C terminal KHQ81_06945 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ81_06990 PF00795 Carbon-nitrogen hydrolase KHQ81_06990 PF02540 NAD synthase KHQ81_06995 PF01467 Cytidylyltransferase-like KHQ81_07000 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KHQ81_07000 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KHQ81_07005 PF00890 FAD binding domain KHQ81_07010 PF02445 Quinolinate synthetase A protein KHQ81_07015 PF02653 Branched-chain amino acid transport system / permease component KHQ81_07020 PF02653 Branched-chain amino acid transport system / permease component KHQ81_07025 PF00005 ABC transporter KHQ81_07030 PF02608 ABC transporter substrate-binding protein PnrA-like KHQ81_07040 PF00753 Metallo-beta-lactamase superfamily KHQ81_07040 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ81_07040 PF17770 Ribonuclease J C-terminal domain KHQ81_07045 PF00701 Dihydrodipicolinate synthetase family KHQ81_07050 PF00696 Amino acid kinase family KHQ81_07050 PF13840 ACT domain KHQ81_07055 PF02774 Semialdehyde dehydrogenase, dimerisation domain KHQ81_07055 PF01118 Semialdehyde dehydrogenase, NAD binding domain KHQ81_07060 PF02441 Flavoprotein KHQ81_07090 PF00013 KH domain KHQ81_07090 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KHQ81_07090 PF01138 3' exoribonuclease family, domain 1 KHQ81_07090 PF03725 3' exoribonuclease family, domain 2 KHQ81_07090 PF00575 S1 RNA binding domain KHQ81_07095 PF00312 Ribosomal protein S15 KHQ81_07100 PF06574 FAD synthetase KHQ81_07100 PF01687 Riboflavin kinase KHQ81_07105 PF01509 TruB family pseudouridylate synthase (N terminal domain) KHQ81_07105 PF16198 tRNA pseudouridylate synthase B C-terminal domain KHQ81_07115 PF00085 Thioredoxin KHQ81_07120 PF00488 MutS domain V KHQ81_07120 PF01713 Smr domain KHQ81_07125 PF11858 Domain of unknown function (DUF3378) KHQ81_07125 PF01351 Ribonuclease HII KHQ81_07130 PF01165 Ribosomal protein S21 KHQ81_07135 PF04055 Radical SAM superfamily KHQ81_07135 PF01938 TRAM domain KHQ81_07135 PF00919 Uncharacterized protein family UPF0004 KHQ81_07140 PF04452 RNA methyltransferase KHQ81_07145 PF00226 DnaJ domain KHQ81_07145 PF01556 DnaJ C terminal domain KHQ81_07145 PF00684 DnaJ central domain KHQ81_07150 PF00012 Hsp70 protein KHQ81_07155 PF01025 GrpE KHQ81_07160 PF01628 HrcA protein C terminal domain KHQ81_07175 PF01252 Signal peptidase (SPase) II KHQ81_07200 PF06969 HemN C-terminal domain KHQ81_07200 PF04055 Radical SAM superfamily KHQ81_07220 PF01119 DNA mismatch repair protein, C-terminal domain KHQ81_07220 PF08676 MutL C terminal dimerisation domain KHQ81_07225 PF01624 MutS domain I KHQ81_07225 PF05188 MutS domain II KHQ81_07225 PF05192 MutS domain III KHQ81_07225 PF05190 MutS family domain IV KHQ81_07225 PF00488 MutS domain V KHQ81_07230 PF10628 Outer spore coat protein E (CotE) KHQ81_07240 PF01938 TRAM domain KHQ81_07240 PF04055 Radical SAM superfamily KHQ81_07240 PF00919 Uncharacterized protein family UPF0004 KHQ81_07245 PF12558 ATP-binding cassette cobalt transporter KHQ81_07245 PF00005 ABC transporter KHQ81_07250 PF03649 Uncharacterised protein family (UPF0014) KHQ81_07255 PF01554 MatE KHQ81_07260 PF02915 Rubrerythrin KHQ81_07265 PF00269 Small, acid-soluble spore proteins, alpha/beta type KHQ81_07270 PF00269 Small, acid-soluble spore proteins, alpha/beta type KHQ81_07275 PF00269 Small, acid-soluble spore proteins, alpha/beta type KHQ81_07280 PF00269 Small, acid-soluble spore proteins, alpha/beta type KHQ81_07285 PF02568 Thiamine biosynthesis protein (ThiI) KHQ81_07285 PF02926 THUMP domain KHQ81_07290 PF00266 Aminotransferase class-V KHQ81_07300 PF01479 S4 domain KHQ81_07300 PF00163 Ribosomal protein S4/S9 N-terminal domain KHQ81_07305 PF16360 GTP-binding GTPase Middle Region KHQ81_07305 PF13167 GTP-binding GTPase N-terminal KHQ81_07305 PF01926 50S ribosome-binding GTPase KHQ81_07315 PF00579 tRNA synthetases class I (W and Y) KHQ81_07315 PF01479 S4 domain KHQ81_07325 PF06130 Phosphate propanoyltransferase KHQ81_07330 PF00356 Bacterial regulatory proteins, lacI family KHQ81_07335 PF01817 Chorismate mutase type II KHQ81_07335 PF00793 DAHP synthetase I family KHQ81_07345 PF01225 Mur ligase family, catalytic domain KHQ81_07345 PF02875 Mur ligase family, glutamate ligase domain KHQ81_07345 PF08245 Mur ligase middle domain KHQ81_07350 PF17854 FtsK alpha domain KHQ81_07350 PF09397 Ftsk gamma domain KHQ81_07350 PF01580 FtsK/SpoIIIE family KHQ81_07355 PF00085 Thioredoxin KHQ81_07360 PF01931 Protein of unknown function DUF84 KHQ81_07365 PF05343 M42 glutamyl aminopeptidase KHQ81_07375 PF01551 Peptidase family M23 KHQ81_07380 PF00056 lactate/malate dehydrogenase, NAD binding domain KHQ81_07380 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KHQ81_07405 PF13276 HTH-like domain KHQ81_07405 PF00665 Integrase core domain KHQ81_07405 PF13333 Integrase core domain KHQ81_07425 PF00291 Pyridoxal-phosphate dependent enzyme KHQ81_07435 PF00753 Metallo-beta-lactamase superfamily KHQ81_07435 PF03772 Competence protein KHQ81_07470 PF02719 Polysaccharide biosynthesis protein KHQ81_07495 PF16200 C-terminal region of band_7 KHQ81_07495 PF01145 SPFH domain / Band 7 family KHQ81_07505 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_07510 PF00005 ABC transporter KHQ81_07515 PF00005 ABC transporter KHQ81_07515 PF16326 ABC transporter C-terminal domain KHQ81_07515 PF12848 ABC transporter KHQ81_07520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ81_07540 PF00005 ABC transporter KHQ81_07545 PF00440 Bacterial regulatory proteins, tetR family KHQ81_07555 PF06445 GyrI-like small molecule binding domain KHQ81_07555 PF13411 MerR HTH family regulatory protein KHQ81_07560 PF00440 Bacterial regulatory proteins, tetR family KHQ81_07565 PF01554 MatE KHQ81_07580 PF00733 Asparagine synthase KHQ81_07580 PF13537 Glutamine amidotransferase domain KHQ81_07585 PF05525 Branched-chain amino acid transport protein KHQ81_07590 PF12833 Helix-turn-helix domain KHQ81_07595 PF02146 Sir2 family KHQ81_07600 PF12833 Helix-turn-helix domain KHQ81_07600 PF06445 GyrI-like small molecule binding domain KHQ81_07605 PF08191 LRR adjacent KHQ81_07605 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_07605 PF13457 GW (Gly-Tryp) dipeptide domain KHQ81_07605 PF13855 Leucine rich repeat KHQ81_07605 PF12354 Bacterial adhesion/invasion protein N terminal KHQ81_07605 PF12799 Leucine Rich repeats (2 copies) KHQ81_07625 PF00005 ABC transporter KHQ81_07630 PF00005 ABC transporter KHQ81_07650 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_07660 PF00171 Aldehyde dehydrogenase family KHQ81_07665 PF00465 Iron-containing alcohol dehydrogenase KHQ81_07670 PF08361 MAATS-type transcriptional repressor, C-terminal region KHQ81_07670 PF00440 Bacterial regulatory proteins, tetR family KHQ81_07675 PF02390 Putative methyltransferase KHQ81_07680 PF01546 Peptidase family M20/M25/M40 KHQ81_07695 PF00005 ABC transporter KHQ81_07710 PF06827 Zinc finger found in FPG and IleRS KHQ81_07710 PF00133 tRNA synthetases class I (I, L, M and V) KHQ81_07710 PF08264 Anticodon-binding domain of tRNA KHQ81_07730 PF04472 Cell division protein SepF KHQ81_07735 PF01168 Alanine racemase, N-terminal domain KHQ81_07740 PF05239 PRC-barrel domain KHQ81_07745 PF04539 Sigma-70 region 3 KHQ81_07745 PF04542 Sigma-70 region 2 KHQ81_07745 PF04545 Sigma-70, region 4 KHQ81_07750 PF04545 Sigma-70, region 4 KHQ81_07750 PF04542 Sigma-70 region 2 KHQ81_07760 PF13367 PrsW family intramembrane metalloprotease KHQ81_07785 PF04232 Stage V sporulation protein S (SpoVS) KHQ81_07790 PF13277 YmdB-like protein KHQ81_07795 PF01966 HD domain KHQ81_07795 PF00013 KH domain KHQ81_07795 PF12072 Domain of unknown function (DUF3552) KHQ81_07800 PF00154 recA bacterial DNA recombination protein KHQ81_07805 PF01066 CDP-alcohol phosphatidyltransferase KHQ81_07815 PF03838 Recombination protein U KHQ81_07820 PF00912 Transglycosylase KHQ81_07820 PF00905 Penicillin binding protein transpeptidase domain KHQ81_07850 PF02386 Cation transport protein KHQ81_07865 PF12848 ABC transporter KHQ81_07865 PF00005 ABC transporter KHQ81_07875 PF04519 Polymer-forming cytoskeletal KHQ81_07880 PF13171 Protein of unknown function (DUF4004) KHQ81_07890 PF00753 Metallo-beta-lactamase superfamily KHQ81_07895 PF00005 ABC transporter KHQ81_07895 PF00664 ABC transporter transmembrane region KHQ81_07900 PF00005 ABC transporter KHQ81_07900 PF00664 ABC transporter transmembrane region KHQ81_07910 PF00324 Amino acid permease KHQ81_07925 PF00072 Response regulator receiver domain KHQ81_07940 PF00196 Bacterial regulatory proteins, luxR family KHQ81_07940 PF00072 Response regulator receiver domain KHQ81_07945 PF07730 Histidine kinase KHQ81_07950 PF00665 Integrase core domain KHQ81_07950 PF13276 HTH-like domain KHQ81_07950 PF13333 Integrase core domain KHQ81_07965 PF00005 ABC transporter KHQ81_07970 PF01734 Patatin-like phospholipase KHQ81_07985 PF12105 SpoU, rRNA methylase, C-terminal KHQ81_07985 PF00588 SpoU rRNA Methylase family KHQ81_07995 PF03553 Na+/H+ antiporter family KHQ81_08010 PF01066 CDP-alcohol phosphatidyltransferase KHQ81_08020 PF00155 Aminotransferase class I and II KHQ81_08025 PF08240 Alcohol dehydrogenase GroES-like domain KHQ81_08025 PF00107 Zinc-binding dehydrogenase KHQ81_08035 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_08035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ81_08040 PF02347 Glycine cleavage system P-protein KHQ81_08045 PF02347 Glycine cleavage system P-protein KHQ81_08050 PF01597 Glycine cleavage H-protein KHQ81_08055 PF01571 Aminomethyltransferase folate-binding domain KHQ81_08055 PF08669 Glycine cleavage T-protein C-terminal barrel domain KHQ81_08060 PF03099 Biotin/lipoate A/B protein ligase family KHQ81_08060 PF10437 Bacterial lipoate protein ligase C-terminus KHQ81_08075 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_08085 PF00183 Hsp90 protein KHQ81_08100 PF01546 Peptidase family M20/M25/M40 KHQ81_08100 PF07687 Peptidase dimerisation domain KHQ81_08110 PF01381 Helix-turn-helix KHQ81_08115 PF12002 MgsA AAA+ ATPase C terminal KHQ81_08115 PF16193 AAA C-terminal domain KHQ81_08115 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_08120 PF00899 ThiF family KHQ81_08130 PF01594 AI-2E family transporter KHQ81_08150 PF01336 OB-fold nucleic acid binding domain KHQ81_08150 PF02938 GAD domain KHQ81_08150 PF00152 tRNA synthetases class II (D, K and N) KHQ81_08155 PF03129 Anticodon binding domain KHQ81_08155 PF13393 Histidyl-tRNA synthetase KHQ81_08175 PF08241 Methyltransferase domain KHQ81_08210 PF12833 Helix-turn-helix domain KHQ81_08210 PF06445 GyrI-like small molecule binding domain KHQ81_08215 PF13649 Methyltransferase domain KHQ81_08230 PF00746 LPXTG cell wall anchor motif KHQ81_08230 PF00149 Calcineurin-like phosphoesterase KHQ81_08230 PF00565 Staphylococcal nuclease homologue KHQ81_08230 PF02872 5'-nucleotidase, C-terminal domain KHQ81_08235 PF01979 Amidohydrolase family KHQ81_08240 PF07883 Cupin domain KHQ81_08245 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_08245 PF07581 The GLUG motif KHQ81_08305 PF02580 D-Tyr-tRNA(Tyr) deacylase KHQ81_08310 PF13291 ACT domain KHQ81_08310 PF04607 Region found in RelA / SpoT proteins KHQ81_08310 PF02824 TGS domain KHQ81_08315 PF00156 Phosphoribosyl transferase domain KHQ81_08320 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KHQ81_08320 PF17768 RecJ OB domain KHQ81_08320 PF02272 DHHA1 domain KHQ81_08320 PF01368 DHH family KHQ81_08325 PF01943 Polysaccharide biosynthesis protein KHQ81_08325 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ81_08330 PF04239 Protein of unknown function (DUF421) KHQ81_08355 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_08355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KHQ81_08365 PF16925 Tetracyclin repressor-like, C-terminal domain KHQ81_08365 PF00440 Bacterial regulatory proteins, tetR family KHQ81_08410 PF02899 Phage integrase, N-terminal SAM-like domain KHQ81_08410 PF00589 Phage integrase family KHQ81_08450 PF01225 Mur ligase family, catalytic domain KHQ81_08450 PF02875 Mur ligase family, glutamate ligase domain KHQ81_08450 PF08245 Mur ligase middle domain KHQ81_08470 PF00665 Integrase core domain KHQ81_08480 PF01695 IstB-like ATP binding protein KHQ81_08490 PF02699 Preprotein translocase subunit KHQ81_08495 PF01702 Queuine tRNA-ribosyltransferase KHQ81_08500 PF02547 Queuosine biosynthesis protein KHQ81_08505 PF05491 RuvB C-terminal winged helix domain KHQ81_08505 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ81_08505 PF17864 RuvB AAA lid domain KHQ81_08510 PF07499 RuvA, C-terminal domain KHQ81_08510 PF01330 RuvA N terminal domain KHQ81_08520 PF01226 Formate/nitrite transporter KHQ81_08540 PF01018 GTP1/OBG KHQ81_08540 PF09269 Domain of unknown function (DUF1967) KHQ81_08540 PF01926 50S ribosome-binding GTPase KHQ81_08545 PF01016 Ribosomal L27 protein KHQ81_08550 PF04327 Cysteine protease Prp KHQ81_08555 PF00829 Ribosomal prokaryotic L21 protein KHQ81_08560 PF02163 Peptidase family M50 KHQ81_08565 PF01551 Peptidase family M23 KHQ81_08575 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KHQ81_08585 PF01510 N-acetylmuramoyl-L-alanine amidase KHQ81_08585 PF01476 LysM domain KHQ81_08585 PF01471 Putative peptidoglycan binding domain KHQ81_08590 PF01695 IstB-like ATP binding protein KHQ81_08595 PF13610 DDE domain KHQ81_08605 PF12833 Helix-turn-helix domain KHQ81_08625 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_08625 PF07581 The GLUG motif KHQ81_08630 PF00665 Integrase core domain KHQ81_08630 PF13333 Integrase core domain KHQ81_08630 PF13276 HTH-like domain KHQ81_08640 PF03576 Peptidase family S58 KHQ81_08675 PF13683 Integrase core domain KHQ81_08675 PF01610 Transposase KHQ81_08700 PF04002 RadC-like JAB domain KHQ81_08705 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ81_08705 PF07581 The GLUG motif KHQ81_08710 PF04002 RadC-like JAB domain KHQ81_08720 PF02875 Mur ligase family, glutamate ligase domain KHQ81_08720 PF08245 Mur ligase middle domain KHQ81_08725 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ81_08725 PF00633 Helix-hairpin-helix motif KHQ81_08725 PF10576 Iron-sulfur binding domain of endonuclease III KHQ81_08735 PF01743 Poly A polymerase head domain KHQ81_08735 PF12627 Probable RNA and SrmB- binding site of polymerase A KHQ81_08735 PF13735 tRNA nucleotidyltransferase domain 2 putative KHQ81_08740 PF05173 Dihydrodipicolinate reductase, C-terminus KHQ81_08740 PF01113 Dihydrodipicolinate reductase, N-terminus KHQ81_08745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ81_08750 PF01761 3-dehydroquinate synthase KHQ81_08755 PF01264 Chorismate synthase KHQ81_08770 PF00216 Bacterial DNA-binding protein KHQ81_08775 PF09547 Stage IV sporulation protein A (spore_IV_A) KHQ81_08785 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KHQ81_08785 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KHQ81_08790 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KHQ81_08790 PF01926 50S ribosome-binding GTPase KHQ81_08795 PF00575 S1 RNA binding domain KHQ81_08810 PF03030 Inorganic H+ pyrophosphatase KHQ81_08815 PF00849 RNA pseudouridylate synthase KHQ81_08815 PF01479 S4 domain KHQ81_08820 PF07670 Nucleoside recognition KHQ81_08825 PF07670 Nucleoside recognition KHQ81_08830 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ81_08830 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ81_08835 PF04079 Segregation and condensation complex subunit ScpB KHQ81_08840 PF02616 Segregation and condensation protein ScpA KHQ81_08845 PF03323 Bacillus/Clostridium GerA spore germination protein KHQ81_08850 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KHQ81_08855 PF07451 Stage V sporulation protein AD (SpoVAD) KHQ81_08860 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KHQ81_08865 PF04542 Sigma-70 region 2 KHQ81_08865 PF04545 Sigma-70, region 4 KHQ81_08870 PF13581 Histidine kinase-like ATPase domain KHQ81_08875 PF01740 STAS domain KHQ81_08895 PF00005 ABC transporter KHQ81_08900 PF01022 Bacterial regulatory protein, arsR family KHQ81_08930 PF03932 CutC family KHQ81_08970 PF01381 Helix-turn-helix KHQ81_08980 PF06445 GyrI-like small molecule binding domain KHQ81_08980 PF12833 Helix-turn-helix domain KHQ81_08985 PF09278 MerR, DNA binding KHQ81_08985 PF00376 MerR family regulatory protein KHQ81_08990 PF00106 short chain dehydrogenase KHQ81_09000 PF12833 Helix-turn-helix domain KHQ81_09000 PF06445 GyrI-like small molecule binding domain KHQ81_09010 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ81_09015 PF13302 Acetyltransferase (GNAT) domain KHQ81_09075 PF05593 RHS Repeat KHQ81_09080 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ81_09080 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ81_09090 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ81_09090 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ81_09095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KHQ81_09095 PF00591 Glycosyl transferase family, a/b domain KHQ81_09095 PF02885 Glycosyl transferase family, helical bundle domain KHQ81_09100 PF00300 Histidine phosphatase superfamily (branch 1) KHQ81_09110 PF00355 Rieske [2Fe-2S] domain KHQ81_09110 PF01266 FAD dependent oxidoreductase KHQ81_09115 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ81_09120 PF00291 Pyridoxal-phosphate dependent enzyme KHQ81_09130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ81_09130 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_09135 PF01569 PAP2 superfamily KHQ81_09155 PF01368 DHH family KHQ81_09155 PF02272 DHHA1 domain KHQ81_09160 PF12327 FtsZ family, C-terminal domain KHQ81_09160 PF00091 Tubulin/FtsZ family, GTPase domain KHQ81_09170 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KHQ81_09170 PF01565 FAD binding domain KHQ81_09175 PF03033 Glycosyltransferase family 28 N-terminal domain KHQ81_09175 PF04101 Glycosyltransferase family 28 C-terminal domain KHQ81_09180 PF01098 Cell cycle protein KHQ81_09185 PF08245 Mur ligase middle domain KHQ81_09185 PF02875 Mur ligase family, glutamate ligase domain KHQ81_09190 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KHQ81_09190 PF00953 Glycosyl transferase family 4 KHQ81_09195 PF01225 Mur ligase family, catalytic domain KHQ81_09195 PF02875 Mur ligase family, glutamate ligase domain KHQ81_09195 PF08245 Mur ligase middle domain KHQ81_09200 PF00905 Penicillin binding protein transpeptidase domain KHQ81_09200 PF03793 PASTA domain KHQ81_09200 PF03717 Penicillin-binding Protein dimerisation domain KHQ81_09205 PF00781 Diacylglycerol kinase catalytic domain KHQ81_09230 PF01795 MraW methylase family KHQ81_09235 PF01943 Polysaccharide biosynthesis protein KHQ81_09235 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ81_09240 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ81_09250 PF11490 DNA polymerase III polC-type N-terminus II KHQ81_09250 PF02811 PHP domain KHQ81_09250 PF14579 Helix-hairpin-helix motif KHQ81_09250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ81_09250 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ81_09250 PF00929 Exonuclease KHQ81_09250 PF14480 DNA polymerase III polC-type N-terminus I KHQ81_09265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_09270 PF02254 TrkA-N domain KHQ81_09270 PF02080 TrkA-C domain KHQ81_09290 PF00664 ABC transporter transmembrane region KHQ81_09290 PF00005 ABC transporter KHQ81_09295 PF00005 ABC transporter KHQ81_09295 PF00664 ABC transporter transmembrane region KHQ81_09305 PF00005 ABC transporter KHQ81_09305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_09310 PF00005 ABC transporter KHQ81_09310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_09315 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ81_09315 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_09320 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_09325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ81_09345 PF12833 Helix-turn-helix domain KHQ81_09350 PF00106 short chain dehydrogenase KHQ81_09360 PF03764 Elongation factor G, domain IV KHQ81_09360 PF00009 Elongation factor Tu GTP binding domain KHQ81_09360 PF03144 Elongation factor Tu domain 2 KHQ81_09360 PF00679 Elongation factor G C-terminus KHQ81_09360 PF14492 Elongation Factor G, domain II KHQ81_09370 PF03707 Bacterial signalling protein N terminal repeat KHQ81_09370 PF00990 Diguanylate cyclase, GGDEF domain KHQ81_09370 PF00563 EAL domain KHQ81_09445 PF03060 Nitronate monooxygenase KHQ81_09455 PF00535 Glycosyl transferase family 2 KHQ81_09460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KHQ81_09460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KHQ81_09460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KHQ81_09470 PF01610 Transposase KHQ81_09470 PF13683 Integrase core domain KHQ81_09475 PF01370 NAD dependent epimerase/dehydratase family KHQ81_09490 PF00534 Glycosyl transferases group 1 KHQ81_09490 PF13477 Glycosyl transferase 4-like KHQ81_09495 PF00535 Glycosyl transferase family 2 KHQ81_09505 PF00535 Glycosyl transferase family 2 KHQ81_09510 PF00005 ABC transporter KHQ81_09510 PF08239 Bacterial SH3 domain KHQ81_09515 PF01061 ABC-2 type transporter KHQ81_09520 PF16363 GDP-mannose 4,6 dehydratase KHQ81_09525 PF04321 RmlD substrate binding domain KHQ81_09535 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KHQ81_09540 PF00483 Nucleotidyl transferase KHQ81_09550 PF00535 Glycosyl transferase family 2 KHQ81_09565 PF04397 LytTr DNA-binding domain KHQ81_09565 PF00072 Response regulator receiver domain KHQ81_09575 PF00664 ABC transporter transmembrane region KHQ81_09575 PF00005 ABC transporter KHQ81_09580 PF00005 ABC transporter KHQ81_09620 PF01695 IstB-like ATP binding protein KHQ81_09630 PF00665 Integrase core domain KHQ81_09640 PF02350 UDP-N-acetylglucosamine 2-epimerase KHQ81_09645 PF01370 NAD dependent epimerase/dehydratase family KHQ81_09650 PF08485 Polysaccharide biosynthesis protein C-terminal KHQ81_09650 PF02719 Polysaccharide biosynthesis protein KHQ81_09665 PF00534 Glycosyl transferases group 1 KHQ81_09665 PF13439 Glycosyltransferase Family 4 KHQ81_09675 PF01370 NAD dependent epimerase/dehydratase family KHQ81_09680 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KHQ81_09680 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KHQ81_09680 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KHQ81_09685 PF13477 Glycosyl transferase 4-like KHQ81_09685 PF00534 Glycosyl transferases group 1 KHQ81_09690 PF02397 Bacterial sugar transferase KHQ81_09695 PF02719 Polysaccharide biosynthesis protein KHQ81_09710 PF01418 Helix-turn-helix domain, rpiR family KHQ81_09710 PF01380 SIS domain KHQ81_09720 PF02397 Bacterial sugar transferase KHQ81_09725 PF00535 Glycosyl transferase family 2 KHQ81_09730 PF02719 Polysaccharide biosynthesis protein KHQ81_09785 PF02706 Chain length determinant protein KHQ81_09790 PF13614 AAA domain KHQ81_09795 PF13614 AAA domain KHQ81_09800 PF02706 Chain length determinant protein KHQ81_09805 PF00923 Transaldolase/Fructose-6-phosphate aldolase KHQ81_09820 PF01381 Helix-turn-helix KHQ81_09825 PF00453 Ribosomal protein L20 KHQ81_09830 PF01632 Ribosomal protein L35 KHQ81_09835 PF00707 Translation initiation factor IF-3, C-terminal domain KHQ81_09835 PF05198 Translation initiation factor IF-3, N-terminal domain KHQ81_09840 PF02824 TGS domain KHQ81_09840 PF03129 Anticodon binding domain KHQ81_09840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ81_09840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ81_09850 PF07319 Primosomal protein DnaI N-terminus KHQ81_09850 PF01695 IstB-like ATP binding protein KHQ81_09865 PF01121 Dephospho-CoA kinase KHQ81_09870 PF06827 Zinc finger found in FPG and IleRS KHQ81_09870 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KHQ81_09870 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KHQ81_09880 PF00476 DNA polymerase family A KHQ81_09880 PF01367 5'-3' exonuclease, C-terminal SAM fold KHQ81_09880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KHQ81_09885 PF02557 D-alanyl-D-alanine carboxypeptidase KHQ81_09895 PF00578 AhpC/TSA family KHQ81_09895 PF10417 C-terminal domain of 1-Cys peroxiredoxin KHQ81_09900 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KHQ81_09900 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ81_09900 PF14602 Hexapeptide repeat of succinyl-transferase KHQ81_09915 PF07478 D-ala D-ala ligase C-terminus KHQ81_09915 PF01820 D-ala D-ala ligase N-terminus KHQ81_09930 PF08245 Mur ligase middle domain KHQ81_09930 PF02875 Mur ligase family, glutamate ligase domain KHQ81_09930 PF01225 Mur ligase family, catalytic domain KHQ81_09950 PF02875 Mur ligase family, glutamate ligase domain KHQ81_09950 PF08245 Mur ligase middle domain KHQ81_09960 PF01225 Mur ligase family, catalytic domain KHQ81_09960 PF02875 Mur ligase family, glutamate ligase domain KHQ81_09960 PF08245 Mur ligase middle domain KHQ81_09965 PF14398 YheC/D like ATP-grasp KHQ81_09970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KHQ81_09970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ81_09975 PF00381 PTS HPr component phosphorylation site KHQ81_09995 PF02142 MGS-like domain KHQ81_10000 PF02673 Bacitracin resistance protein BacA KHQ81_10015 PF00128 Alpha amylase, catalytic domain KHQ81_10020 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_10025 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_10030 PF13416 Bacterial extracellular solute-binding protein KHQ81_10045 PF03309 Type III pantothenate kinase KHQ81_10050 PF00571 CBS domain KHQ81_10050 PF03471 Transporter associated domain KHQ81_10050 PF01595 Cyclin M transmembrane N-terminal domain KHQ81_10055 PF13361 UvrD-like helicase C-terminal domain KHQ81_10055 PF12705 PD-(D/E)XK nuclease superfamily KHQ81_10055 PF00580 UvrD/REP helicase N-terminal domain KHQ81_10060 PF12705 PD-(D/E)XK nuclease superfamily KHQ81_10075 PF00005 ABC transporter KHQ81_10075 PF17912 MalK OB fold domain KHQ81_10075 PF03459 TOBE domain KHQ81_10085 PF01513 ATP-NAD kinase KHQ81_10090 PF04607 Region found in RelA / SpoT proteins KHQ81_10095 PF01928 CYTH domain KHQ81_10100 PF03960 ArsC family KHQ81_10105 PF00579 tRNA synthetases class I (W and Y) KHQ81_10115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_10115 PF00005 ABC transporter KHQ81_10120 PF00005 ABC transporter KHQ81_10120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ81_10125 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_10125 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ81_10130 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_10135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ81_10140 PF01554 MatE KHQ81_10145 PF17871 AAA lid domain KHQ81_10145 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_10145 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ81_10145 PF02861 Clp amino terminal domain, pathogenicity island component KHQ81_10145 PF07724 AAA domain (Cdc48 subfamily) KHQ81_10175 PF00391 PEP-utilising enzyme, mobile domain KHQ81_10175 PF00224 Pyruvate kinase, barrel domain KHQ81_10175 PF02887 Pyruvate kinase, alpha/beta domain KHQ81_10180 PF00365 Phosphofructokinase KHQ81_10185 PF02811 PHP domain KHQ81_10185 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ81_10185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ81_10185 PF14579 Helix-hairpin-helix motif KHQ81_10185 PF01336 OB-fold nucleic acid binding domain KHQ81_10190 PF00871 Acetokinase family KHQ81_10200 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KHQ81_10210 PF00733 Asparagine synthase KHQ81_10210 PF13537 Glutamine amidotransferase domain KHQ81_10215 PF01809 Putative membrane protein insertion efficiency factor KHQ81_10400 PF17674 HHH domain KHQ81_10400 PF00575 S1 RNA binding domain KHQ81_10400 PF09371 Tex-like protein N-terminal domain KHQ81_10400 PF16921 Tex protein YqgF-like domain KHQ81_10405 PF00155 Aminotransferase class I and II KHQ81_10415 PF04070 Domain of unknown function (DUF378) KHQ81_10420 PF01648 4'-phosphopantetheinyl transferase superfamily KHQ81_10425 PF01381 Helix-turn-helix KHQ81_10430 PF04439 Streptomycin adenylyltransferase KHQ81_10435 PF01515 Phosphate acetyl/butaryl transferase KHQ81_10440 PF00871 Acetokinase family KHQ81_10445 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KHQ81_10445 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KHQ81_10455 PF04223 Citrate lyase, alpha subunit (CitF) KHQ81_10460 PF03328 HpcH/HpaI aldolase/citrate lyase family KHQ81_10465 PF06857 Malonate decarboxylase delta subunit (MdcD) KHQ81_10470 PF07476 Methylaspartate ammonia-lyase C-terminus KHQ81_10470 PF05034 Methylaspartate ammonia-lyase N-terminus KHQ81_10475 PF06368 Methylaspartate mutase E chain (MutE) KHQ81_10480 PF13941 MutL protein KHQ81_10485 PF02310 B12 binding domain KHQ81_10490 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KHQ81_10495 PF08218 Citrate lyase ligase C-terminal domain KHQ81_10500 PF03313 Serine dehydratase alpha chain KHQ81_10510 PF00710 Asparaginase, N-terminal KHQ81_10510 PF17763 Glutaminase/Asparaginase C-terminal domain KHQ81_10520 PF04961 Formiminotransferase-cyclodeaminase KHQ81_10525 PF01979 Amidohydrolase family KHQ81_10530 PF02971 Formiminotransferase domain KHQ81_10530 PF07837 Formiminotransferase domain, N-terminal subdomain KHQ81_10535 PF17391 Urocanase N-terminal domain KHQ81_10535 PF17392 Urocanase C-terminal domain KHQ81_10535 PF01175 Urocanase Rossmann-like domain KHQ81_10540 PF00221 Aromatic amino acid lyase KHQ81_10560 PF01042 Endoribonuclease L-PSP KHQ81_10570 PF14527 WhiA LAGLIDADG-like domain KHQ81_10570 PF02650 WhiA C-terminal HTH domain KHQ81_10570 PF10298 WhiA N-terminal LAGLIDADG-like domain KHQ81_10575 PF01933 Uncharacterised protein family UPF0052 KHQ81_10580 PF03668 P-loop ATPase protein family KHQ81_10585 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_10590 PF13419 Haloacid dehalogenase-like hydrolase KHQ81_10595 PF01790 Prolipoprotein diacylglyceryl transferase KHQ81_10600 PF07475 HPr Serine kinase C-terminal domain KHQ81_10600 PF02603 HPr Serine kinase N terminus KHQ81_10615 PF17755 UvrA DNA-binding domain KHQ81_10615 PF00005 ABC transporter KHQ81_10615 PF17760 UvrA interaction domain KHQ81_10635 PF02638 Glycosyl hydrolase-like 10 KHQ81_10645 PF00005 ABC transporter KHQ81_10655 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KHQ81_10655 PF12826 Helix-hairpin-helix motif KHQ81_10655 PF00533 BRCA1 C Terminus (BRCT) domain KHQ81_10655 PF01653 NAD-dependent DNA ligase adenylation domain KHQ81_10655 PF03120 NAD-dependent DNA ligase OB-fold domain KHQ81_10670 PF13333 Integrase core domain KHQ81_10670 PF00665 Integrase core domain KHQ81_10670 PF13276 HTH-like domain KHQ81_10675 PF08323 Starch synthase catalytic domain KHQ81_10675 PF00534 Glycosyl transferases group 1 KHQ81_10685 PF05195 Aminopeptidase P, N-terminal domain KHQ81_10685 PF00557 Metallopeptidase family M24 KHQ81_10690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ81_10690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ81_10690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ81_10690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ81_10695 PF00550 Phosphopantetheine attachment site KHQ81_10700 PF00877 NlpC/P60 family KHQ81_10700 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain KHQ81_10705 PF13180 PDZ domain KHQ81_10720 PF02735 Ku70/Ku80 beta-barrel domain KHQ81_10735 PF16363 GDP-mannose 4,6 dehydratase KHQ81_10745 PF00588 SpoU rRNA Methylase family KHQ81_10750 PF08331 Domain of unknown function (DUF1730) KHQ81_10765 PF04167 Protein of unknown function (DUF402) KHQ81_10770 PF00085 Thioredoxin KHQ81_10775 PF03960 ArsC family KHQ81_10780 PF01171 PP-loop family KHQ81_10805 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KHQ81_10810 PF01979 Amidohydrolase family KHQ81_10815 PF00392 Bacterial regulatory proteins, gntR family KHQ81_10815 PF07702 UTRA domain KHQ81_10820 PF04239 Protein of unknown function (DUF421) KHQ81_10855 PF02899 Phage integrase, N-terminal SAM-like domain KHQ81_10855 PF00589 Phage integrase family KHQ81_10865 PF00145 C-5 cytosine-specific DNA methylase KHQ81_10925 PF00665 Integrase core domain KHQ81_10925 PF13276 HTH-like domain KHQ81_10925 PF13333 Integrase core domain KHQ81_10975 PF00665 Integrase core domain KHQ81_10975 PF13333 Integrase core domain KHQ81_10975 PF13276 HTH-like domain KHQ81_10980 PF00005 ABC transporter KHQ81_11010 PF13276 HTH-like domain KHQ81_11010 PF00665 Integrase core domain KHQ81_11010 PF13333 Integrase core domain KHQ81_11040 PF00005 ABC transporter KHQ81_11040 PF12848 ABC transporter KHQ81_11045 PF01510 N-acetylmuramoyl-L-alanine amidase KHQ81_11045 PF12123 N-acetylmuramoyl-l-alanine amidase KHQ81_11070 PF00155 Aminotransferase class I and II KHQ81_11075 PF00106 short chain dehydrogenase KHQ81_11090 PF02001 Protein of unknown function DUF134 KHQ81_11095 PF00266 Aminotransferase class-V KHQ81_11115 PF05343 M42 glutamyl aminopeptidase KHQ81_11120 PF00156 Phosphoribosyl transferase domain KHQ81_11125 PF00884 Sulfatase KHQ81_11135 PF00535 Glycosyl transferase family 2 KHQ81_11150 PF00248 Aldo/keto reductase family KHQ81_11165 PF00005 ABC transporter KHQ81_11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_11175 PF00072 Response regulator receiver domain KHQ81_11175 PF00486 Transcriptional regulatory protein, C terminal KHQ81_11180 PF01926 50S ribosome-binding GTPase KHQ81_11180 PF06071 Protein of unknown function (DUF933) KHQ81_11185 PF00912 Transglycosylase KHQ81_11185 PF00905 Penicillin binding protein transpeptidase domain KHQ81_11190 PF13180 PDZ domain KHQ81_11195 PF01026 TatD related DNase KHQ81_11200 PF03006 Haemolysin-III related KHQ81_11220 PF06969 HemN C-terminal domain KHQ81_11220 PF04055 Radical SAM superfamily KHQ81_11225 PF08279 HTH domain KHQ81_11225 PF13280 WYL domain KHQ81_11230 PF00561 alpha/beta hydrolase fold KHQ81_11235 PF00664 ABC transporter transmembrane region KHQ81_11235 PF00005 ABC transporter KHQ81_11245 PF01906 Putative heavy-metal-binding KHQ81_11260 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ81_11265 PF00005 ABC transporter KHQ81_11270 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_11295 PF04231 Endonuclease I KHQ81_11320 PF00149 Calcineurin-like phosphoesterase KHQ81_11325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KHQ81_11325 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KHQ81_11325 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KHQ81_11335 PF00293 NUDIX domain KHQ81_11340 PF03193 RsgA GTPase KHQ81_11350 PF00083 Sugar (and other) transporter KHQ81_11365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KHQ81_11365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KHQ81_11380 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_11425 PF00583 Acetyltransferase (GNAT) family KHQ81_11445 PF00583 Acetyltransferase (GNAT) family KHQ81_11455 PF00005 ABC transporter KHQ81_11470 PF07690 Major Facilitator Superfamily KHQ81_11485 PF03006 Haemolysin-III related KHQ81_11490 PF00005 ABC transporter KHQ81_11495 PF01523 Putative modulator of DNA gyrase KHQ81_11500 PF01523 Putative modulator of DNA gyrase KHQ81_11510 PF00155 Aminotransferase class I and II KHQ81_11535 PF02586 SOS response associated peptidase (SRAP) KHQ81_11545 PF04055 Radical SAM superfamily KHQ81_11555 PF13333 Integrase core domain KHQ81_11555 PF13276 HTH-like domain KHQ81_11555 PF00665 Integrase core domain KHQ81_11580 PF13302 Acetyltransferase (GNAT) domain KHQ81_11580 PF03352 Methyladenine glycosylase KHQ81_11580 PF13673 Acetyltransferase (GNAT) domain KHQ81_11580 PF00958 GMP synthase C terminal domain KHQ81_11580 PF00117 Glutamine amidotransferase class-I KHQ81_11585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KHQ81_11585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KHQ81_11595 PF00873 AcrB/AcrD/AcrF family KHQ81_11620 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_11620 PF13192 Thioredoxin domain KHQ81_11625 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_11625 PF13192 Thioredoxin domain KHQ81_11635 PF12704 MacB-like periplasmic core domain KHQ81_11635 PF02687 FtsX-like permease family KHQ81_11635 PF00005 ABC transporter KHQ81_11670 PF00005 ABC transporter KHQ81_11675 PF12704 MacB-like periplasmic core domain KHQ81_11675 PF02687 FtsX-like permease family KHQ81_11680 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KHQ81_11680 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KHQ81_11685 PF01636 Phosphotransferase enzyme family KHQ81_11715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_11730 PF00005 ABC transporter KHQ81_11745 PF01432 Peptidase family M3 KHQ81_11745 PF08439 Oligopeptidase F KHQ81_11770 PF00005 ABC transporter KHQ81_11775 PF00392 Bacterial regulatory proteins, gntR family KHQ81_11780 PF01209 ubiE/COQ5 methyltransferase family KHQ81_11790 PF13411 MerR HTH family regulatory protein KHQ81_11805 PF01381 Helix-turn-helix KHQ81_11820 PF00753 Metallo-beta-lactamase superfamily KHQ81_11855 PF00563 EAL domain KHQ81_11855 PF00990 Diguanylate cyclase, GGDEF domain KHQ81_11855 PF05231 MASE1 KHQ81_11855 PF08447 PAS fold KHQ81_11855 PF08448 PAS fold KHQ81_11855 PF13426 PAS domain KHQ81_11865 PF00586 AIR synthase related protein, N-terminal domain KHQ81_11865 PF02769 AIR synthase related protein, C-terminal domain KHQ81_11870 PF00581 Rhodanese-like domain KHQ81_11885 PF01980 tRNA-methyltransferase O KHQ81_11885 PF18389 TrmO C-terminal domain KHQ81_11890 PF06445 GyrI-like small molecule binding domain KHQ81_11890 PF12833 Helix-turn-helix domain KHQ81_11900 PF00270 DEAD/DEAH box helicase KHQ81_11900 PF00271 Helicase conserved C-terminal domain KHQ81_11905 PF00756 Putative esterase KHQ81_11910 PF00072 Response regulator receiver domain KHQ81_11915 PF10437 Bacterial lipoate protein ligase C-terminus KHQ81_11915 PF03099 Biotin/lipoate A/B protein ligase family KHQ81_11920 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_11920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ81_11930 PF01047 MarR family KHQ81_11950 PF00144 Beta-lactamase KHQ81_11950 PF11954 Domain of unknown function (DUF3471) KHQ81_11970 PF01180 Dihydroorotate dehydrogenase KHQ81_11975 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KHQ81_11980 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KHQ81_11985 PF01979 Amidohydrolase family KHQ81_11990 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KHQ81_11990 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KHQ81_11995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ81_11995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ81_12025 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding KHQ81_12025 PF18381 YcaO cyclodehydratase C-terminal domain KHQ81_12030 PF00313 'Cold-shock' DNA-binding domain KHQ81_12040 PF07731 Multicopper oxidase KHQ81_12040 PF00394 Multicopper oxidase KHQ81_12040 PF07732 Multicopper oxidase KHQ81_12050 PF13333 Integrase core domain KHQ81_12050 PF13276 HTH-like domain KHQ81_12050 PF00665 Integrase core domain KHQ81_12055 PF03551 Transcriptional regulator PadR-like family KHQ81_12075 PF00005 ABC transporter KHQ81_12080 PF01032 FecCD transport family KHQ81_12085 PF01497 Periplasmic binding protein KHQ81_12100 PF03851 UV-endonuclease UvdE KHQ81_12105 PF02525 Flavodoxin-like fold KHQ81_12145 PF13276 HTH-like domain KHQ81_12145 PF13333 Integrase core domain KHQ81_12145 PF00665 Integrase core domain KHQ81_12165 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_12165 PF18698 Histidine kinase sensor domain KHQ81_12165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_12165 PF00672 HAMP domain KHQ81_12170 PF00072 Response regulator receiver domain KHQ81_12170 PF00486 Transcriptional regulatory protein, C terminal KHQ81_12180 PF00005 ABC transporter KHQ81_12190 PF02583 Metal-sensitive transcriptional repressor KHQ81_12195 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_12220 PF13280 WYL domain KHQ81_12220 PF08279 HTH domain KHQ81_12225 PF11954 Domain of unknown function (DUF3471) KHQ81_12225 PF00144 Beta-lactamase KHQ81_12235 PF06827 Zinc finger found in FPG and IleRS KHQ81_12235 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KHQ81_12235 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KHQ81_12245 PF00356 Bacterial regulatory proteins, lacI family KHQ81_12250 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_12255 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_12275 PF00128 Alpha amylase, catalytic domain KHQ81_12280 PF02903 Alpha amylase, N-terminal ig-like domain KHQ81_12280 PF00128 Alpha amylase, catalytic domain KHQ81_12280 PF16657 Maltogenic Amylase, C-terminal domain KHQ81_12285 PF03714 Bacterial pullanase-associated domain KHQ81_12285 PF00128 Alpha amylase, catalytic domain KHQ81_12285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ81_12290 PF00343 Carbohydrate phosphorylase KHQ81_12295 PF00128 Alpha amylase, catalytic domain KHQ81_12300 PF16657 Maltogenic Amylase, C-terminal domain KHQ81_12300 PF00128 Alpha amylase, catalytic domain KHQ81_12305 PF00291 Pyridoxal-phosphate dependent enzyme KHQ81_12315 PF01337 Barstar (barnase inhibitor) KHQ81_12330 PF07729 FCD domain KHQ81_12330 PF00392 Bacterial regulatory proteins, gntR family KHQ81_12345 PF12146 Serine aminopeptidase, S33 KHQ81_12350 PF00583 Acetyltransferase (GNAT) family KHQ81_12355 PF00144 Beta-lactamase KHQ81_12360 PF03063 Prismane/CO dehydrogenase family KHQ81_12370 PF00005 ABC transporter KHQ81_12375 PF02492 CobW/HypB/UreG, nucleotide-binding domain KHQ81_12380 PF13416 Bacterial extracellular solute-binding protein KHQ81_12405 PF00005 ABC transporter KHQ81_12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_12415 PF00072 Response regulator receiver domain KHQ81_12415 PF00486 Transcriptional regulatory protein, C terminal KHQ81_12435 PF01695 IstB-like ATP binding protein KHQ81_12450 PF00440 Bacterial regulatory proteins, tetR family KHQ81_12450 PF17932 Tetracyclin repressor-like, C-terminal domain KHQ81_12455 PF13276 HTH-like domain KHQ81_12455 PF00665 Integrase core domain KHQ81_12455 PF13333 Integrase core domain KHQ81_12485 PF00155 Aminotransferase class I and II KHQ81_12490 PF03707 Bacterial signalling protein N terminal repeat KHQ81_12490 PF00990 Diguanylate cyclase, GGDEF domain KHQ81_12490 PF00563 EAL domain KHQ81_12500 PF03707 Bacterial signalling protein N terminal repeat KHQ81_12500 PF00990 Diguanylate cyclase, GGDEF domain KHQ81_12500 PF00563 EAL domain KHQ81_12520 PF12697 Alpha/beta hydrolase family KHQ81_12570 PF01022 Bacterial regulatory protein, arsR family KHQ81_12580 PF04072 Leucine carboxyl methyltransferase KHQ81_12585 PF00440 Bacterial regulatory proteins, tetR family KHQ81_12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_12590 PF00672 HAMP domain KHQ81_12590 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_12595 PF00486 Transcriptional regulatory protein, C terminal KHQ81_12595 PF00072 Response regulator receiver domain KHQ81_12600 PF00144 Beta-lactamase KHQ81_12610 PF01636 Phosphotransferase enzyme family KHQ81_12615 PF01695 IstB-like ATP binding protein KHQ81_12630 PF01381 Helix-turn-helix KHQ81_12650 PF02909 Tetracyclin repressor-like, C-terminal domain KHQ81_12650 PF00440 Bacterial regulatory proteins, tetR family KHQ81_12675 PF00753 Metallo-beta-lactamase superfamily KHQ81_12675 PF14864 Alkyl sulfatase C-terminal KHQ81_12675 PF14863 Alkyl sulfatase dimerisation KHQ81_12680 PF02475 Met-10+ like-protein KHQ81_12680 PF01938 TRAM domain KHQ81_12680 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ81_12690 PF00005 ABC transporter KHQ81_12690 PF17850 CysA C-terminal regulatory domain KHQ81_12695 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_12705 PF04239 Protein of unknown function (DUF421) KHQ81_12710 PF03313 Serine dehydratase alpha chain KHQ81_12710 PF03315 Serine dehydratase beta chain KHQ81_12725 PF00271 Helicase conserved C-terminal domain KHQ81_12725 PF04851 Type III restriction enzyme, res subunit KHQ81_12725 PF12344 Ultra-violet resistance protein B KHQ81_12725 PF02151 UvrB/uvrC motif KHQ81_12725 PF17757 UvrB interaction domain KHQ81_12730 PF17820 PDZ domain KHQ81_12730 PF03572 Peptidase family S41 KHQ81_12730 PF01471 Putative peptidoglycan binding domain KHQ81_12735 PF03462 PCRF domain KHQ81_12735 PF00472 RF-1 domain KHQ81_12740 PF02810 SEC-C motif KHQ81_12740 PF07517 SecA DEAD-like domain KHQ81_12740 PF01043 SecA preprotein cross-linking domain KHQ81_12740 PF07516 SecA Wing and Scaffold domain KHQ81_12750 PF13476 AAA domain KHQ81_12755 PF12320 Type 5 capsule protein repressor C-terminal domain KHQ81_12755 PF00149 Calcineurin-like phosphoesterase KHQ81_12760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KHQ81_12760 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KHQ81_12765 PF00313 'Cold-shock' DNA-binding domain KHQ81_12775 PF00271 Helicase conserved C-terminal domain KHQ81_12775 PF04851 Type III restriction enzyme, res subunit KHQ81_13040 PF09669 Phage regulatory protein Rha (Phage_pRha) KHQ81_13040 PF03374 Phage antirepressor protein KilAC domain KHQ81_13055 PF01381 Helix-turn-helix KHQ81_13075 PF02796 Helix-turn-helix domain of resolvase KHQ81_13075 PF00239 Resolvase, N terminal domain KHQ81_13100 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_13105 PF02645 Uncharacterised protein, DegV family COG1307 KHQ81_13110 PF09186 Domain of unknown function (DUF1949) KHQ81_13110 PF01205 Uncharacterized protein family UPF0029 KHQ81_13115 PF12116 Stage III sporulation protein D KHQ81_13145 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KHQ81_13145 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KHQ81_13150 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ81_13150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ81_13155 PF00231 ATP synthase KHQ81_13160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ81_13160 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ81_13160 PF00306 ATP synthase alpha/beta chain, C terminal domain KHQ81_13165 PF00213 ATP synthase delta (OSCP) subunit KHQ81_13170 PF00430 ATP synthase B/B' CF(0) KHQ81_13175 PF00137 ATP synthase subunit C KHQ81_13180 PF00119 ATP synthase A chain KHQ81_13200 PF00464 Serine hydroxymethyltransferase KHQ81_13205 PF02502 Ribose/Galactose Isomerase KHQ81_13230 PF00574 Clp protease KHQ81_13260 PF01820 D-ala D-ala ligase N-terminus KHQ81_13260 PF07478 D-ala D-ala ligase C-terminus KHQ81_13265 PF02875 Mur ligase family, glutamate ligase domain KHQ81_13265 PF08245 Mur ligase middle domain KHQ81_13265 PF01225 Mur ligase family, catalytic domain KHQ81_13270 PF00561 alpha/beta hydrolase fold KHQ81_13275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ81_13275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ81_13275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ81_13275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ81_13280 PF02457 DisA bacterial checkpoint controller nucleotide-binding KHQ81_13300 PF00561 alpha/beta hydrolase fold KHQ81_13360 PF00664 ABC transporter transmembrane region KHQ81_13360 PF00005 ABC transporter KHQ81_13365 PF00005 ABC transporter KHQ81_13365 PF00664 ABC transporter transmembrane region KHQ81_13375 PF12822 ECF transporter, substrate-specific component KHQ81_13395 PF01381 Helix-turn-helix KHQ81_13400 PF05154 TM2 domain KHQ81_13410 PF17910 FeoB cytosolic helical domain KHQ81_13410 PF02421 Ferrous iron transport protein B KHQ81_13410 PF07670 Nucleoside recognition KHQ81_13410 PF07664 Ferrous iron transport protein B C terminus KHQ81_13465 PF13662 Toprim domain KHQ81_13465 PF02132 RecR protein KHQ81_13470 PF02575 YbaB/EbfC DNA-binding family KHQ81_13475 PF12169 DNA polymerase III subunits gamma and tau domain III KHQ81_13515 PF01895 PhoU domain KHQ81_13520 PF00005 ABC transporter KHQ81_13525 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_13530 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_13535 PF12849 PBP superfamily domain KHQ81_13540 PF02690 Na+/Pi-cotransporter KHQ81_13550 PF16736 Single Cache-like KHQ81_13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_13550 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_13550 PF00989 PAS fold KHQ81_13555 PF00072 Response regulator receiver domain KHQ81_13555 PF00486 Transcriptional regulatory protein, C terminal KHQ81_13565 PF14437 MafB19-like deaminase KHQ81_13575 PF00265 Thymidine kinase KHQ81_13580 PF01197 Ribosomal protein L31 KHQ81_13585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ81_13590 PF05681 Fumarate hydratase (Fumerase) KHQ81_13590 PF05683 Fumarase C-terminus KHQ81_13600 PF00390 Malic enzyme, N-terminal domain KHQ81_13600 PF03949 Malic enzyme, NAD binding domain KHQ81_13605 PF10415 Fumarase C C-terminus KHQ81_13605 PF00206 Lyase KHQ81_13610 PF02424 ApbE family KHQ81_13625 PF00348 Polyprenyl synthetase KHQ81_13635 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ81_13640 PF00860 Permease family KHQ81_13645 PF00860 Permease family KHQ81_13650 PF00459 Inositol monophosphatase family KHQ81_13655 PF02592 Putative vitamin uptake transporter KHQ81_13660 PF12437 Glutamine synthetase type III N terminal KHQ81_13660 PF18318 Glutamine synthetase C-terminal domain KHQ81_13660 PF00120 Glutamine synthetase, catalytic domain KHQ81_13665 PF12832 MFS_1 like family KHQ81_13670 PF02638 Glycosyl hydrolase-like 10 KHQ81_13675 PF01209 ubiE/COQ5 methyltransferase family KHQ81_13685 PF00206 Lyase KHQ81_13685 PF10397 Adenylosuccinate lyase C-terminus KHQ81_13690 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KHQ81_13690 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KHQ81_13695 PF00266 Aminotransferase class-V KHQ81_13700 PF01268 Formate--tetrahydrofolate ligase KHQ81_13715 PF00709 Adenylosuccinate synthetase KHQ81_13720 PF01134 Glucose inhibited division protein A KHQ81_13720 PF13932 GidA associated domain KHQ81_13725 PF02535 ZIP Zinc transporter KHQ81_13730 PF01116 Fructose-bisphosphate aldolase class-II KHQ81_13735 PF06418 CTP synthase N-terminus KHQ81_13735 PF00117 Glutamine amidotransferase class-I KHQ81_13740 PF05066 HB1, ASXL, restriction endonuclease HTH domain KHQ81_13745 PF03485 Arginyl tRNA synthetase N terminal domain KHQ81_13745 PF05746 DALR anticodon binding domain KHQ81_13745 PF00750 tRNA synthetases class I (R) KHQ81_13755 PF00005 ABC transporter KHQ81_13755 PF00664 ABC transporter transmembrane region KHQ81_13760 PF06107 Bacterial protein of unknown function (DUF951) KHQ81_13765 PF17762 HTH domain found in ParB protein KHQ81_13765 PF02195 ParB-like nuclease domain KHQ81_13770 PF13614 AAA domain KHQ81_13775 PF17762 HTH domain found in ParB protein KHQ81_13775 PF02195 ParB-like nuclease domain KHQ81_13785 PF02527 rRNA small subunit methyltransferase G KHQ81_13790 PF13932 GidA associated domain KHQ81_13790 PF01134 Glucose inhibited division protein A KHQ81_13795 PF00152 tRNA synthetases class II (D, K and N) KHQ81_13795 PF01336 OB-fold nucleic acid binding domain KHQ81_13800 PF02646 RmuC family KHQ81_13805 PF12631 MnmE helical domain KHQ81_13805 PF10396 GTP-binding protein TrmE N-terminus KHQ81_13805 PF01926 50S ribosome-binding GTPase KHQ81_13815 PF02096 60Kd inner membrane protein KHQ81_13820 PF00825 Ribonuclease P KHQ81_13825 PF00468 Ribosomal protein L34 KHQ81_13830 PF00308 Bacterial dnaA protein KHQ81_13830 PF08299 Bacterial dnaA protein helix-turn-helix KHQ81_13830 PF11638 DnaA N-terminal domain KHQ81_13835 PF00712 DNA polymerase III beta subunit, N-terminal domain KHQ81_13835 PF02767 DNA polymerase III beta subunit, central domain KHQ81_13835 PF02768 DNA polymerase III beta subunit, C-terminal domain KHQ81_13850 PF02463 RecF/RecN/SMC N terminal domain KHQ81_13855 PF00204 DNA gyrase B KHQ81_13855 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ81_13855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_13855 PF01751 Toprim domain KHQ81_13860 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ81_13860 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ81_13865 PF01680 SOR/SNZ family KHQ81_13870 PF13936 Helix-turn-helix domain KHQ81_13870 PF00665 Integrase core domain KHQ81_13880 PF01174 SNO glutamine amidotransferase family KHQ81_13885 PF02403 Seryl-tRNA synthetase N-terminal domain KHQ81_13885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ81_13890 PF00753 Metallo-beta-lactamase superfamily KHQ81_13895 PF02590 Predicted SPOUT methyltransferase KHQ81_13905 PF00156 Phosphoribosyl transferase domain KHQ81_13910 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KHQ81_13915 PF00375 Sodium:dicarboxylate symporter family KHQ81_13935 PF13411 MerR HTH family regulatory protein KHQ81_13940 PF00248 Aldo/keto reductase family KHQ81_13945 PF00849 RNA pseudouridylate synthase KHQ81_13945 PF01479 S4 domain KHQ81_13955 PF01523 Putative modulator of DNA gyrase KHQ81_13975 PF00005 ABC transporter KHQ81_13990 PF08361 MAATS-type transcriptional repressor, C-terminal region KHQ81_13990 PF00440 Bacterial regulatory proteins, tetR family KHQ81_14000 PF05067 Manganese containing catalase KHQ81_14005 PF12652 CotJB protein KHQ81_14020 PF07687 Peptidase dimerisation domain KHQ81_14020 PF01546 Peptidase family M20/M25/M40 KHQ81_14025 PF00293 NUDIX domain KHQ81_14050 PF00072 Response regulator receiver domain KHQ81_14050 PF00486 Transcriptional regulatory protein, C terminal KHQ81_14055 PF18698 Histidine kinase sensor domain KHQ81_14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ81_14055 PF00989 PAS fold KHQ81_14055 PF00512 His Kinase A (phospho-acceptor) domain KHQ81_14055 PF00672 HAMP domain KHQ81_14065 PF16325 Peptidase family U32 C-terminal domain KHQ81_14065 PF01136 Peptidase family U32 KHQ81_14070 PF00202 Aminotransferase class-III KHQ81_14080 PF02441 Flavoprotein KHQ81_14085 PF01040 UbiA prenyltransferase family KHQ81_14090 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KHQ81_14100 PF00005 ABC transporter KHQ81_14105 PF00528 Binding-protein-dependent transport system inner membrane component KHQ81_14110 PF00005 ABC transporter KHQ81_14120 PF00883 Cytosol aminopeptidase family, catalytic domain KHQ81_14120 PF02789 Cytosol aminopeptidase family, N-terminal domain KHQ81_14125 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KHQ81_14130 PF01230 HIT domain KHQ81_14140 PF03167 Uracil DNA glycosylase superfamily KHQ81_14145 PF09671 Spore coat protein (Spore_GerQ) KHQ81_14150 PF07486 Cell Wall Hydrolase KHQ81_14155 PF01966 HD domain KHQ81_14180 PF01170 Putative RNA methylase family UPF0020 KHQ81_14180 PF02926 THUMP domain KHQ81_14195 PF13662 Toprim domain KHQ81_14195 PF13331 Domain of unknown function (DUF4093) KHQ81_14200 PF00398 Ribosomal RNA adenine dimethylase KHQ81_14205 PF05582 YabG peptidase U57 KHQ81_14210 PF00288 GHMP kinases N terminal domain KHQ81_14210 PF08544 GHMP kinases C terminal KHQ81_14215 PF04026 SpoVG KHQ81_14220 PF00483 Nucleotidyl transferase KHQ81_14220 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ81_14225 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ81_14225 PF14572 Phosphoribosyl synthetase-associated domain KHQ81_14230 PF01195 Peptidyl-tRNA hydrolase KHQ81_14235 PF17757 UvrB interaction domain KHQ81_14235 PF03461 TRCF domain KHQ81_14235 PF00271 Helicase conserved C-terminal domain KHQ81_14235 PF00270 DEAD/DEAH box helicase KHQ81_14235 PF02559 CarD-like/TRCF domain KHQ81_14240 PF15714 Stage V sporulation protein T C-terminal, transcription factor KHQ81_14240 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KHQ81_14250 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ81_14250 PF01943 Polysaccharide biosynthesis protein KHQ81_14255 PF01699 Sodium/calcium exchanger protein KHQ81_14275 PF16325 Peptidase family U32 C-terminal domain KHQ81_14275 PF01136 Peptidase family U32 KHQ81_14285 PF03551 Transcriptional regulator PadR-like family KHQ81_14315 PF01145 SPFH domain / Band 7 family KHQ81_14335 PF01479 S4 domain KHQ81_14340 PF01145 SPFH domain / Band 7 family KHQ81_14350 PF07873 YabP family KHQ81_14360 PF07228 Stage II sporulation protein E (SpoIIE) KHQ81_14365 PF01171 PP-loop family KHQ81_14365 PF00156 Phosphoribosyl transferase domain KHQ81_14365 PF11734 TilS substrate C-terminal domain KHQ81_14370 PF00156 Phosphoribosyl transferase domain KHQ81_14375 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_14375 PF17862 AAA+ lid domain KHQ81_14375 PF01434 Peptidase family M41 KHQ81_14380 PF01430 Hsp33 protein KHQ81_14385 PF02545 Maf-like protein KHQ81_14390 PF01381 Helix-turn-helix KHQ81_14415 PF13333 Integrase core domain KHQ81_14415 PF00665 Integrase core domain KHQ81_14415 PF13276 HTH-like domain KHQ81_14460 PF11700 Vacuole effluxer Atg22 like KHQ81_14470 PF12850 Calcineurin-like phosphoesterase superfamily domain KHQ81_14475 PF01207 Dihydrouridine synthase (Dus) KHQ81_14485 PF01336 OB-fold nucleic acid binding domain KHQ81_14485 PF00152 tRNA synthetases class II (D, K and N) KHQ81_14495 PF02542 YgbB family KHQ81_14500 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KHQ81_14505 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KHQ81_14515 PF01479 S4 domain KHQ81_14515 PF00849 RNA pseudouridylate synthase KHQ81_14520 PF02926 THUMP domain KHQ81_14520 PF10672 S-adenosylmethionine-dependent methyltransferase KHQ81_14520 PF01170 Putative RNA methylase family UPF0020 KHQ81_14530 PF18073 Rubredoxin metal binding domain KHQ81_14535 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ81_14535 PF00004 ATPase family associated with various cellular activities (AAA) KHQ81_14535 PF02861 Clp amino terminal domain, pathogenicity island component KHQ81_14535 PF17871 AAA lid domain KHQ81_14535 PF07724 AAA domain (Cdc48 subfamily) KHQ81_14540 PF00317 Ribonucleotide reductase, all-alpha domain KHQ81_14540 PF02867 Ribonucleotide reductase, barrel domain KHQ81_14540 PF03477 ATP cone domain KHQ81_14545 PF01926 50S ribosome-binding GTPase KHQ81_14545 PF13167 GTP-binding GTPase N-terminal KHQ81_14545 PF16360 GTP-binding GTPase Middle Region KHQ81_14550 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ81_14555 PF09190 DALR domain KHQ81_14555 PF01406 tRNA synthetases class I (C) catalytic domain KHQ81_14560 PF00636 Ribonuclease III domain KHQ81_14565 PF00588 SpoU rRNA Methylase family KHQ81_14565 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ81_14570 PF04542 Sigma-70 region 2 KHQ81_14570 PF04545 Sigma-70, region 4 KHQ81_14575 PF00471 Ribosomal protein L33 KHQ81_14585 PF00467 KOW motif KHQ81_14585 PF02357 Transcription termination factor nusG KHQ81_14590 PF03946 Ribosomal protein L11, N-terminal domain KHQ81_14590 PF00298 Ribosomal protein L11, RNA binding domain KHQ81_14595 PF00687 Ribosomal protein L1p/L10e family KHQ81_14600 PF00466 Ribosomal protein L10 KHQ81_14605 PF00542 Ribosomal protein L7/L12 C-terminal domain KHQ81_14605 PF16320 Ribosomal protein L7/L12 dimerisation domain KHQ81_14610 PF05175 Methyltransferase small domain KHQ81_14615 PF04561 RNA polymerase Rpb2, domain 2 KHQ81_14615 PF04565 RNA polymerase Rpb2, domain 3 KHQ81_14615 PF10385 RNA polymerase beta subunit external 1 domain KHQ81_14615 PF00562 RNA polymerase Rpb2, domain 6 KHQ81_14615 PF04560 RNA polymerase Rpb2, domain 7 KHQ81_14615 PF04563 RNA polymerase beta subunit KHQ81_14620 PF05000 RNA polymerase Rpb1, domain 4 KHQ81_14620 PF04983 RNA polymerase Rpb1, domain 3 KHQ81_14620 PF00623 RNA polymerase Rpb1, domain 2 KHQ81_14620 PF04997 RNA polymerase Rpb1, domain 1 KHQ81_14620 PF04998 RNA polymerase Rpb1, domain 5 KHQ81_14625 PF00164 Ribosomal protein S12/S23 KHQ81_14630 PF00177 Ribosomal protein S7p/S5e KHQ81_14635 PF00009 Elongation factor Tu GTP binding domain KHQ81_14635 PF00679 Elongation factor G C-terminus KHQ81_14635 PF14492 Elongation Factor G, domain II KHQ81_14635 PF03764 Elongation factor G, domain IV KHQ81_14635 PF03144 Elongation factor Tu domain 2 KHQ81_14640 PF03144 Elongation factor Tu domain 2 KHQ81_14640 PF03143 Elongation factor Tu C-terminal domain KHQ81_14640 PF00009 Elongation factor Tu GTP binding domain KHQ81_14645 PF00488 MutS domain V KHQ81_14645 PF01713 Smr domain KHQ81_14650 PF00338 Ribosomal protein S10p/S20e KHQ81_14655 PF00297 Ribosomal protein L3 KHQ81_14660 PF00573 Ribosomal protein L4/L1 family KHQ81_14665 PF00276 Ribosomal protein L23 KHQ81_14670 PF00181 Ribosomal Proteins L2, RNA binding domain KHQ81_14670 PF03947 Ribosomal Proteins L2, C-terminal domain KHQ81_14675 PF00203 Ribosomal protein S19 KHQ81_14680 PF00237 Ribosomal protein L22p/L17e KHQ81_14685 PF00189 Ribosomal protein S3, C-terminal domain KHQ81_14685 PF07650 KH domain KHQ81_14690 PF00252 Ribosomal protein L16p/L10e KHQ81_14695 PF00831 Ribosomal L29 protein KHQ81_14700 PF00366 Ribosomal protein S17 KHQ81_14705 PF00238 Ribosomal protein L14p/L23e KHQ81_14710 PF00467 KOW motif KHQ81_14710 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KHQ81_14715 PF00281 Ribosomal protein L5 KHQ81_14715 PF00673 ribosomal L5P family C-terminus KHQ81_14720 PF00253 Ribosomal protein S14p/S29e KHQ81_14725 PF00410 Ribosomal protein S8 KHQ81_14730 PF00347 Ribosomal protein L6 KHQ81_14735 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KHQ81_14740 PF00333 Ribosomal protein S5, N-terminal domain KHQ81_14740 PF03719 Ribosomal protein S5, C-terminal domain KHQ81_14745 PF00327 Ribosomal protein L30p/L7e KHQ81_14750 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KHQ81_14755 PF00344 SecY translocase KHQ81_14760 PF05191 Adenylate kinase, active site lid KHQ81_14765 PF00557 Metallopeptidase family M24 KHQ81_14770 PF01176 Translation initiation factor 1A / IF-1 KHQ81_14775 PF00444 Ribosomal protein L36 KHQ81_14780 PF00416 Ribosomal protein S13/S18 KHQ81_14785 PF00411 Ribosomal protein S11 KHQ81_14790 PF01000 RNA polymerase Rpb3/RpoA insert domain KHQ81_14790 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KHQ81_14790 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KHQ81_14795 PF01196 Ribosomal protein L17 KHQ81_14805 PF00005 ABC transporter KHQ81_14810 PF00005 ABC transporter KHQ81_14815 PF02361 Cobalt transport protein KHQ81_14820 PF01416 tRNA pseudouridine synthase KHQ81_14825 PF07969 Amidohydrolase family KHQ81_14835 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ81_14835 PF00037 4Fe-4S binding domain KHQ81_14835 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KHQ81_14840 PF00037 4Fe-4S binding domain KHQ81_14840 PF02256 Iron hydrogenase small subunit KHQ81_14840 PF02906 Iron only hydrogenase large subunit, C-terminal domain KHQ81_14840 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KHQ81_14845 PF00817 impB/mucB/samB family KHQ81_14845 PF11798 IMS family HHH motif KHQ81_14845 PF11799 impB/mucB/samB family C-terminal domain KHQ81_14855 PF00056 lactate/malate dehydrogenase, NAD binding domain KHQ81_14855 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KHQ81_14860 PF13195 Protein of unknown function (DUF4011) KHQ81_14860 PF13087 AAA domain KHQ81_14860 PF13086 AAA domain KHQ81_14865 PF02223 Thymidylate kinase KHQ81_14870 PF09115 DNA polymerase III, delta subunit, C terminal KHQ81_14875 PF04468 PSP1 C-terminal conserved region KHQ81_14880 PF05175 Methyltransferase small domain KHQ81_14910 PF00121 Triosephosphate isomerase KHQ81_14920 PF02899 Phage integrase, N-terminal SAM-like domain KHQ81_14920 PF00589 Phage integrase family KHQ81_14955 PF13276 HTH-like domain KHQ81_14955 PF00665 Integrase core domain KHQ81_14955 PF13333 Integrase core domain KHQ81_14980 PF01695 IstB-like ATP binding protein KHQ81_15010 PF13276 HTH-like domain KHQ81_15010 PF00665 Integrase core domain KHQ81_15010 PF13333 Integrase core domain KHQ81_15025 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KHQ81_15025 PF01676 Metalloenzyme superfamily KHQ81_15030 PF03481 Putative GTP-binding controlling metal-binding KHQ81_15030 PF01300 Telomere recombination KHQ81_15040 PF09551 Stage II sporulation protein R (spore_II_R) KHQ81_15050 PF01276 Orn/Lys/Arg decarboxylase, major domain KHQ81_15050 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KHQ81_15055 PF00491 Arginase family KHQ81_15080 PF02308 MgtC family KHQ81_15085 PF13673 Acetyltransferase (GNAT) domain KHQ81_15090 PF00005 ABC transporter KHQ81_15095 PF12679 ABC-2 family transporter protein KHQ81_15100 PF09424 Yqey-like protein KHQ81_15105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KHQ81_15105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KHQ81_15110 PF02016 LD-carboxypeptidase N-terminal domain KHQ81_15110 PF17676 LD-carboxypeptidase C-terminal domain KHQ81_15115 PF01235 Sodium:alanine symporter family KHQ81_15120 PF18146 Damage-inducible protein CinA KH domain KHQ81_15120 PF02464 Competence-damaged protein KHQ81_15120 PF00994 Probable molybdopterin binding domain KHQ81_15125 PF00162 Phosphoglycerate kinase KHQ81_15130 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ81_15130 PF05524 PEP-utilising enzyme, N-terminal KHQ81_15130 PF00391 PEP-utilising enzyme, mobile domain KHQ81_15135 PF09334 tRNA synthetases class I (M) KHQ81_15135 PF08264 Anticodon-binding domain of tRNA KHQ81_15135 PF01588 Putative tRNA binding domain KHQ81_15140 PF00572 Ribosomal protein L13 KHQ81_15145 PF00380 Ribosomal protein S9/S16 KHQ81_15180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KHQ81_15180 PF00476 DNA polymerase family A KHQ81_15180 PF01367 5'-3' exonuclease, C-terminal SAM fold KHQ81_15225 PF00005 ABC transporter KHQ81_15340 PF13683 Integrase core domain KHQ81_15340 PF01610 Transposase KHQ81_15410 PF01131 DNA topoisomerase KHQ81_15410 PF01751 Toprim domain KHQ81_15410 PF13342 C-terminal repeat of topoisomerase KHQ81_15515 PF00437 Type II/IV secretion system protein KHQ81_15565 PF12323 Helix-turn-helix domain KHQ81_15565 PF01385 Probable transposase KHQ81_15565 PF07282 Putative transposase DNA-binding domain KHQ81_15660 PF02796 Helix-turn-helix domain of resolvase KHQ81_15660 PF00239 Resolvase, N terminal domain KHQ81_15780 PF18840 Large polyvalent protein associated domain 25 KHQ81_15790 PF00772 DnaB-like helicase N terminal domain KHQ81_15790 PF08275 DNA primase catalytic core, N-terminal domain KHQ81_15790 PF01807 CHC2 zinc finger KHQ81_15830 PF16403 Domain of unknown function (DUF5011)