locus-tag class description KHQ89_00010 PF07972 NrdI Flavodoxin like KHQ89_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_00015 PF00512 His Kinase A (phospho-acceptor) domain KHQ89_00020 PF00072 Response regulator receiver domain KHQ89_00020 PF00486 Transcriptional regulatory protein, C terminal KHQ89_00025 PF01895 PhoU domain KHQ89_00030 PF00005 ABC transporter KHQ89_00035 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_00040 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_00055 PF01544 CorA-like Mg2+ transporter protein KHQ89_00065 PF00005 ABC transporter KHQ89_00065 PF13732 Domain of unknown function (DUF4162) KHQ89_00070 PF08241 Methyltransferase domain KHQ89_00075 PF01371 Trp repressor protein KHQ89_00080 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ89_00085 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_00105 PF00005 ABC transporter KHQ89_00110 PF00171 Aldehyde dehydrogenase family KHQ89_00115 PF08818 Domain of unknown function (DU1801) KHQ89_00120 PF00563 EAL domain KHQ89_00120 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_00120 PF03707 Bacterial signalling protein N terminal repeat KHQ89_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_00135 PF00072 Response regulator receiver domain KHQ89_00135 PF00486 Transcriptional regulatory protein, C terminal KHQ89_00165 PF01790 Prolipoprotein diacylglyceryl transferase KHQ89_00170 PF00403 Heavy-metal-associated domain KHQ89_00185 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_00185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ89_00185 PF00403 Heavy-metal-associated domain KHQ89_00195 PF00403 Heavy-metal-associated domain KHQ89_00200 PF01022 Bacterial regulatory protein, arsR family KHQ89_00210 PF01938 TRAM domain KHQ89_00210 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ89_00215 PF00248 Aldo/keto reductase family KHQ89_00225 PF00270 DEAD/DEAH box helicase KHQ89_00225 PF00271 Helicase conserved C-terminal domain KHQ89_00265 PF00271 Helicase conserved C-terminal domain KHQ89_00265 PF00270 DEAD/DEAH box helicase KHQ89_00270 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_00275 PF00005 ABC transporter KHQ89_00290 PF02508 Rnf-Nqr subunit, membrane protein KHQ89_00300 PF03116 NQR2, RnfD, RnfE family KHQ89_00320 PF00092 von Willebrand factor type A domain KHQ89_00320 PF12034 Domain of unknown function (DUF3520) KHQ89_00320 PF12450 von Willebrand factor KHQ89_00325 PF00486 Transcriptional regulatory protein, C terminal KHQ89_00325 PF00072 Response regulator receiver domain KHQ89_00330 PF00672 HAMP domain KHQ89_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_00330 PF00512 His Kinase A (phospho-acceptor) domain KHQ89_00365 PF00781 Diacylglycerol kinase catalytic domain KHQ89_00390 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_00395 PF02817 e3 binding domain KHQ89_00395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KHQ89_00395 PF00364 Biotin-requiring enzyme KHQ89_00405 PF00676 Dehydrogenase E1 component KHQ89_00410 PF00491 Arginase family KHQ89_00415 PF01276 Orn/Lys/Arg decarboxylase, major domain KHQ89_00415 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KHQ89_00420 PF00924 Mechanosensitive ion channel KHQ89_00425 PF00005 ABC transporter KHQ89_00430 PF00733 Asparagine synthase KHQ89_00430 PF13537 Glutamine amidotransferase domain KHQ89_00435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ89_00435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ89_00440 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_00450 PF00860 Permease family KHQ89_00455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KHQ89_00455 PF02378 Phosphotransferase system, EIIC KHQ89_00455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KHQ89_00465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KHQ89_00465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KHQ89_00475 PF00294 pfkB family carbohydrate kinase KHQ89_00480 PF00230 Major intrinsic protein KHQ89_00485 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ89_00485 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ89_00495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KHQ89_00505 PF17827 PrmC N-terminal domain KHQ89_00505 PF05175 Methyltransferase small domain KHQ89_00510 PF04468 PSP1 C-terminal conserved region KHQ89_00515 PF09115 DNA polymerase III, delta subunit, C terminal KHQ89_00520 PF02223 Thymidylate kinase KHQ89_00525 PF01416 tRNA pseudouridine synthase KHQ89_00530 PF02361 Cobalt transport protein KHQ89_00535 PF00005 ABC transporter KHQ89_00545 PF00085 Thioredoxin KHQ89_00550 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_00575 PF04231 Endonuclease I KHQ89_00580 PF01196 Ribosomal protein L17 KHQ89_00585 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KHQ89_00585 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KHQ89_00585 PF01000 RNA polymerase Rpb3/RpoA insert domain KHQ89_00590 PF00411 Ribosomal protein S11 KHQ89_00595 PF00416 Ribosomal protein S13/S18 KHQ89_00600 PF00444 Ribosomal protein L36 KHQ89_00605 PF01176 Translation initiation factor 1A / IF-1 KHQ89_00610 PF00557 Metallopeptidase family M24 KHQ89_00615 PF05191 Adenylate kinase, active site lid KHQ89_00620 PF00344 SecY translocase KHQ89_00625 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KHQ89_00630 PF00327 Ribosomal protein L30p/L7e KHQ89_00635 PF03719 Ribosomal protein S5, C-terminal domain KHQ89_00635 PF00333 Ribosomal protein S5, N-terminal domain KHQ89_00645 PF00347 Ribosomal protein L6 KHQ89_00650 PF00410 Ribosomal protein S8 KHQ89_00660 PF00281 Ribosomal protein L5 KHQ89_00660 PF00673 ribosomal L5P family C-terminus KHQ89_00665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KHQ89_00670 PF00238 Ribosomal protein L14p/L23e KHQ89_00675 PF00366 Ribosomal protein S17 KHQ89_00680 PF00831 Ribosomal L29 protein KHQ89_00685 PF00252 Ribosomal protein L16p/L10e KHQ89_00690 PF07650 KH domain KHQ89_00690 PF00189 Ribosomal protein S3, C-terminal domain KHQ89_00695 PF00237 Ribosomal protein L22p/L17e KHQ89_00700 PF00203 Ribosomal protein S19 KHQ89_00705 PF03947 Ribosomal Proteins L2, C-terminal domain KHQ89_00705 PF00181 Ribosomal Proteins L2, RNA binding domain KHQ89_00710 PF00276 Ribosomal protein L23 KHQ89_00715 PF00573 Ribosomal protein L4/L1 family KHQ89_00720 PF00297 Ribosomal protein L3 KHQ89_00725 PF00338 Ribosomal protein S10p/S20e KHQ89_00740 PF00480 ROK family KHQ89_00750 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_00850 PF02195 ParB-like nuclease domain KHQ89_00850 PF17762 HTH domain found in ParB protein KHQ89_00855 PF13614 AAA domain KHQ89_00860 PF02527 rRNA small subunit methyltransferase G KHQ89_00865 PF01134 Glucose inhibited division protein A KHQ89_00865 PF13932 GidA associated domain KHQ89_00870 PF00456 Transketolase, thiamine diphosphate binding domain KHQ89_00870 PF02779 Transketolase, pyrimidine binding domain KHQ89_00870 PF02780 Transketolase, C-terminal domain KHQ89_00885 PF14437 MafB19-like deaminase KHQ89_00890 PF00265 Thymidine kinase KHQ89_00895 PF01197 Ribosomal protein L31 KHQ89_00915 PF04060 Putative Fe-S cluster KHQ89_00925 PF02508 Rnf-Nqr subunit, membrane protein KHQ89_00930 PF02508 Rnf-Nqr subunit, membrane protein KHQ89_00945 PF03116 NQR2, RnfD, RnfE family KHQ89_00955 PF13375 RnfC Barrel sandwich hybrid domain KHQ89_00955 PF13237 4Fe-4S dicluster domain KHQ89_00955 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ89_00955 PF10531 SLBB domain KHQ89_00960 PF00464 Serine hydroxymethyltransferase KHQ89_00965 PF01709 Transcriptional regulator KHQ89_00970 PF00719 Inorganic pyrophosphatase KHQ89_00975 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KHQ89_00975 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KHQ89_00980 PF01268 Formate--tetrahydrofolate ligase KHQ89_00985 PF04055 Radical SAM superfamily KHQ89_00995 PF13167 GTP-binding GTPase N-terminal KHQ89_00995 PF01926 50S ribosome-binding GTPase KHQ89_00995 PF16360 GTP-binding GTPase Middle Region KHQ89_01015 PF01207 Dihydrouridine synthase (Dus) KHQ89_01020 PF01430 Hsp33 protein KHQ89_01025 PF13276 HTH-like domain KHQ89_01025 PF00665 Integrase core domain KHQ89_01025 PF13333 Integrase core domain KHQ89_01030 PF13333 Integrase core domain KHQ89_01030 PF00665 Integrase core domain KHQ89_01045 PF14310 Fibronectin type III-like domain KHQ89_01045 PF00933 Glycosyl hydrolase family 3 N terminal domain KHQ89_01045 PF01915 Glycosyl hydrolase family 3 C-terminal domain KHQ89_01050 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 KHQ89_01050 PF00703 Glycosyl hydrolases family 2 KHQ89_01050 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KHQ89_01050 PF02837 Glycosyl hydrolases family 2, sugar binding domain KHQ89_01055 PF16874 Glycosyl hydrolase family 36 C-terminal domain KHQ89_01055 PF16875 Glycosyl hydrolase family 36 N-terminal domain KHQ89_01060 PF00128 Alpha amylase, catalytic domain KHQ89_01065 PF02545 Maf-like protein KHQ89_01070 PF11734 TilS substrate C-terminal domain KHQ89_01070 PF01171 PP-loop family KHQ89_01075 PF11734 TilS substrate C-terminal domain KHQ89_01075 PF00156 Phosphoribosyl transferase domain KHQ89_01075 PF01171 PP-loop family KHQ89_01085 PF01479 S4 domain KHQ89_01120 PF01116 Fructose-bisphosphate aldolase class-II KHQ89_01125 PF06418 CTP synthase N-terminus KHQ89_01125 PF00117 Glutamine amidotransferase class-I KHQ89_01135 PF05066 HB1, ASXL, restriction endonuclease HTH domain KHQ89_01145 PF02132 RecR protein KHQ89_01145 PF13662 Toprim domain KHQ89_01150 PF02575 YbaB/EbfC DNA-binding family KHQ89_01155 PF12169 DNA polymerase III subunits gamma and tau domain III KHQ89_01160 PF01926 50S ribosome-binding GTPase KHQ89_01160 PF12631 MnmE helical domain KHQ89_01160 PF10396 GTP-binding protein TrmE N-terminus KHQ89_01165 PF02308 MgtC family KHQ89_01170 PF01171 PP-loop family KHQ89_01175 PF01368 DHH family KHQ89_01175 PF02272 DHHA1 domain KHQ89_01180 PF02272 DHHA1 domain KHQ89_01180 PF01368 DHH family KHQ89_01185 PF00958 GMP synthase C terminal domain KHQ89_01185 PF00117 Glutamine amidotransferase class-I KHQ89_01190 PF00478 IMP dehydrogenase / GMP reductase domain KHQ89_01195 PF16363 GDP-mannose 4,6 dehydratase KHQ89_01200 PF10509 Galactokinase galactose-binding signature KHQ89_01200 PF08544 GHMP kinases C terminal KHQ89_01200 PF00288 GHMP kinases N terminal domain KHQ89_01205 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KHQ89_01205 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KHQ89_01210 PF00356 Bacterial regulatory proteins, lacI family KHQ89_01240 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_01250 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_01255 PF00005 ABC transporter KHQ89_01275 PF02646 RmuC family KHQ89_01290 PF02096 60Kd inner membrane protein KHQ89_01295 PF00825 Ribonuclease P KHQ89_01300 PF00468 Ribosomal protein L34 KHQ89_01310 PF00712 DNA polymerase III beta subunit, N-terminal domain KHQ89_01310 PF02767 DNA polymerase III beta subunit, central domain KHQ89_01310 PF02768 DNA polymerase III beta subunit, C-terminal domain KHQ89_01320 PF02463 RecF/RecN/SMC N terminal domain KHQ89_01330 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ89_01330 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ89_01335 PF01594 AI-2E family transporter KHQ89_01340 PF04525 LURP-one-related KHQ89_01360 PF00884 Sulfatase KHQ89_01370 PF02673 Bacitracin resistance protein BacA KHQ89_01380 PF00483 Nucleotidyl transferase KHQ89_01390 PF00072 Response regulator receiver domain KHQ89_01390 PF00486 Transcriptional regulatory protein, C terminal KHQ89_01395 PF00512 His Kinase A (phospho-acceptor) domain KHQ89_01395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_01395 PF00672 HAMP domain KHQ89_01405 PF01230 HIT domain KHQ89_01410 PF06130 Phosphate propanoyltransferase KHQ89_01415 PF01966 HD domain KHQ89_01420 PF13662 Toprim domain KHQ89_01420 PF13331 Domain of unknown function (DUF4093) KHQ89_01425 PF00398 Ribosomal RNA adenine dimethylase KHQ89_01430 PF08544 GHMP kinases C terminal KHQ89_01430 PF00288 GHMP kinases N terminal domain KHQ89_01435 PF04026 SpoVG KHQ89_01440 PF14572 Phosphoribosyl synthetase-associated domain KHQ89_01440 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ89_01445 PF01195 Peptidyl-tRNA hydrolase KHQ89_01450 PF17757 UvrB interaction domain KHQ89_01450 PF00271 Helicase conserved C-terminal domain KHQ89_01450 PF03461 TRCF domain KHQ89_01450 PF02559 CarD-like/TRCF domain KHQ89_01450 PF00270 DEAD/DEAH box helicase KHQ89_01460 PF00155 Aminotransferase class I and II KHQ89_01465 PF02457 DisA bacterial checkpoint controller nucleotide-binding KHQ89_01480 PF01812 5-formyltetrahydrofolate cyclo-ligase family KHQ89_01485 PF02542 YgbB family KHQ89_01485 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KHQ89_01495 PF01106 NifU-like domain KHQ89_01505 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_01510 PF00575 S1 RNA binding domain KHQ89_01515 PF00342 Phosphoglucose isomerase KHQ89_01520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KHQ89_01525 PF00814 Glycoprotease family KHQ89_01535 PF00814 Glycoprotease family KHQ89_01560 PF02586 SOS response associated peptidase (SRAP) KHQ89_01565 PF03180 NLPA lipoprotein KHQ89_01570 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_01575 PF09383 NIL domain KHQ89_01575 PF00005 ABC transporter KHQ89_01590 PF11798 IMS family HHH motif KHQ89_01590 PF11799 impB/mucB/samB family C-terminal domain KHQ89_01590 PF00817 impB/mucB/samB family KHQ89_01600 PF02146 Sir2 family KHQ89_01610 PF01554 MatE KHQ89_01615 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KHQ89_01615 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ89_01620 PF00580 UvrD/REP helicase N-terminal domain KHQ89_01620 PF13361 UvrD-like helicase C-terminal domain KHQ89_01625 PF00580 UvrD/REP helicase N-terminal domain KHQ89_01625 PF13361 UvrD-like helicase C-terminal domain KHQ89_01640 PF13361 UvrD-like helicase C-terminal domain KHQ89_01640 PF00580 UvrD/REP helicase N-terminal domain KHQ89_01640 PF13361 UvrD-like helicase C-terminal domain KHQ89_01640 PF00580 UvrD/REP helicase N-terminal domain KHQ89_01650 PF12826 Helix-hairpin-helix motif KHQ89_01650 PF03120 NAD-dependent DNA ligase OB-fold domain KHQ89_01650 PF01653 NAD-dependent DNA ligase adenylation domain KHQ89_01650 PF00533 BRCA1 C Terminus (BRCT) domain KHQ89_01650 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KHQ89_01655 PF17755 UvrA DNA-binding domain KHQ89_01655 PF17760 UvrA interaction domain KHQ89_01655 PF00005 ABC transporter KHQ89_01665 PF07475 HPr Serine kinase C-terminal domain KHQ89_01665 PF02603 HPr Serine kinase N terminus KHQ89_01670 PF01790 Prolipoprotein diacylglyceryl transferase KHQ89_01675 PF13419 Haloacid dehalogenase-like hydrolase KHQ89_01680 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_01685 PF14527 WhiA LAGLIDADG-like domain KHQ89_01685 PF10298 WhiA N-terminal LAGLIDADG-like domain KHQ89_01685 PF02650 WhiA C-terminal HTH domain KHQ89_01690 PF01648 4'-phosphopantetheinyl transferase superfamily KHQ89_01720 PF13086 AAA domain KHQ89_01720 PF13087 AAA domain KHQ89_01720 PF13195 Protein of unknown function (DUF4011) KHQ89_01725 PF13195 Protein of unknown function (DUF4011) KHQ89_01725 PF13087 AAA domain KHQ89_01725 PF13086 AAA domain KHQ89_01750 PF03441 FAD binding domain of DNA photolyase KHQ89_01750 PF00875 DNA photolyase KHQ89_01760 PF01381 Helix-turn-helix KHQ89_01765 PF02661 Fic/DOC family KHQ89_01765 PF13784 Fic/DOC family N-terminal KHQ89_01770 PF01381 Helix-turn-helix KHQ89_01785 PF14748 Pyrroline-5-carboxylate reductase dimerisation KHQ89_01785 PF03807 NADP oxidoreductase coenzyme F420-dependent KHQ89_01790 PF00106 short chain dehydrogenase KHQ89_01795 PF03960 ArsC family KHQ89_01845 PF02384 N-6 DNA Methylase KHQ89_01845 PF12161 HsdM N-terminal domain KHQ89_01850 PF01420 Type I restriction modification DNA specificity domain KHQ89_01855 PF18766 SWI2/SNF2 ATPase KHQ89_01855 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KHQ89_01855 PF11867 Domain of unknown function (DUF3387) KHQ89_01865 PF00570 HRDC domain KHQ89_01865 PF00270 DEAD/DEAH box helicase KHQ89_01865 PF00271 Helicase conserved C-terminal domain KHQ89_01865 PF16124 RecQ zinc-binding KHQ89_01865 PF09382 RQC domain KHQ89_01870 PF00271 Helicase conserved C-terminal domain KHQ89_01870 PF00570 HRDC domain KHQ89_01870 PF16124 RecQ zinc-binding KHQ89_01870 PF09382 RQC domain KHQ89_01870 PF00270 DEAD/DEAH box helicase KHQ89_01875 PF03466 LysR substrate binding domain KHQ89_01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KHQ89_01890 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) KHQ89_01890 PF07581 The GLUG motif KHQ89_01920 PF01554 MatE KHQ89_01925 PF07859 alpha/beta hydrolase fold KHQ89_01960 PF13305 Tetracyclin repressor-like, C-terminal domain KHQ89_01960 PF00440 Bacterial regulatory proteins, tetR family KHQ89_01970 PF11954 Domain of unknown function (DUF3471) KHQ89_01970 PF00144 Beta-lactamase KHQ89_01985 PF00107 Zinc-binding dehydrogenase KHQ89_01985 PF08240 Alcohol dehydrogenase GroES-like domain KHQ89_01990 PF04286 Protein of unknown function (DUF445) KHQ89_02040 PF00392 Bacterial regulatory proteins, gntR family KHQ89_02040 PF07702 UTRA domain KHQ89_02055 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02060 PF13416 Bacterial extracellular solute-binding protein KHQ89_02065 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02095 PF03630 Fumble KHQ89_02100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ89_02115 PF00571 CBS domain KHQ89_02115 PF03471 Transporter associated domain KHQ89_02115 PF01595 Cyclin M transmembrane N-terminal domain KHQ89_02120 PF12833 Helix-turn-helix domain KHQ89_02120 PF00072 Response regulator receiver domain KHQ89_02135 PF02743 Cache domain KHQ89_02135 PF00672 HAMP domain KHQ89_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_02135 PF06580 Histidine kinase KHQ89_02145 PF13407 Periplasmic binding protein domain KHQ89_02150 PF13407 Periplasmic binding protein domain KHQ89_02160 PF02653 Branched-chain amino acid transport system / permease component KHQ89_02195 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02225 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02230 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02245 PF16403 Domain of unknown function (DUF5011) KHQ89_02260 PF01301 Glycosyl hydrolases family 35 KHQ89_02270 PF16657 Maltogenic Amylase, C-terminal domain KHQ89_02270 PF00128 Alpha amylase, catalytic domain KHQ89_02275 PF00356 Bacterial regulatory proteins, lacI family KHQ89_02280 PF14310 Fibronectin type III-like domain KHQ89_02280 PF01915 Glycosyl hydrolase family 3 C-terminal domain KHQ89_02280 PF00933 Glycosyl hydrolase family 3 N terminal domain KHQ89_02285 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KHQ89_02290 PF13732 Domain of unknown function (DUF4162) KHQ89_02290 PF00005 ABC transporter KHQ89_02300 PF00356 Bacterial regulatory proteins, lacI family KHQ89_02315 PF04616 Glycosyl hydrolases family 43 KHQ89_02325 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02330 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_02335 PF04616 Glycosyl hydrolases family 43 KHQ89_02345 PF02872 5'-nucleotidase, C-terminal domain KHQ89_02345 PF00149 Calcineurin-like phosphoesterase KHQ89_02350 PF00037 4Fe-4S binding domain KHQ89_02360 PF00486 Transcriptional regulatory protein, C terminal KHQ89_02360 PF00072 Response regulator receiver domain KHQ89_02365 PF00512 His Kinase A (phospho-acceptor) domain KHQ89_02365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_02370 PF12704 MacB-like periplasmic core domain KHQ89_02370 PF02687 FtsX-like permease family KHQ89_02370 PF00005 ABC transporter KHQ89_02380 PF08448 PAS fold KHQ89_02380 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_02390 PF02556 Preprotein translocase subunit SecB KHQ89_02395 PF13180 PDZ domain KHQ89_02415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KHQ89_02415 PF00056 lactate/malate dehydrogenase, NAD binding domain KHQ89_02420 PF01435 Peptidase family M48 KHQ89_02420 PF16491 CAAX prenyl protease N-terminal, five membrane helices KHQ89_02435 PF00860 Permease family KHQ89_02440 PF00156 Phosphoribosyl transferase domain KHQ89_02445 PF00572 Ribosomal protein L13 KHQ89_02450 PF00380 Ribosomal protein S9/S16 KHQ89_02465 PF03412 Peptidase C39 family KHQ89_02465 PF00005 ABC transporter KHQ89_02465 PF00664 ABC transporter transmembrane region KHQ89_02470 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ89_02500 PF01406 tRNA synthetases class I (C) catalytic domain KHQ89_02505 PF00636 Ribonuclease III domain KHQ89_02515 PF00588 SpoU rRNA Methylase family KHQ89_02515 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ89_02525 PF00471 Ribosomal protein L33 KHQ89_02535 PF00467 KOW motif KHQ89_02535 PF02357 Transcription termination factor nusG KHQ89_02540 PF01323 DSBA-like thioredoxin domain KHQ89_02550 PF00298 Ribosomal protein L11, RNA binding domain KHQ89_02550 PF03946 Ribosomal protein L11, N-terminal domain KHQ89_02555 PF00687 Ribosomal protein L1p/L10e family KHQ89_02565 PF16320 Ribosomal protein L7/L12 dimerisation domain KHQ89_02565 PF00542 Ribosomal protein L7/L12 C-terminal domain KHQ89_02570 PF05175 Methyltransferase small domain KHQ89_02585 PF00294 pfkB family carbohydrate kinase KHQ89_02590 PF04227 Indigoidine synthase A like protein KHQ89_02595 PF00155 Aminotransferase class I and II KHQ89_02600 PF00106 short chain dehydrogenase KHQ89_02605 PF01432 Peptidase family M3 KHQ89_02605 PF08439 Oligopeptidase F KHQ89_02610 PF00164 Ribosomal protein S12/S23 KHQ89_02615 PF00177 Ribosomal protein S7p/S5e KHQ89_02620 PF00679 Elongation factor G C-terminus KHQ89_02620 PF14492 Elongation Factor G, domain II KHQ89_02620 PF00009 Elongation factor Tu GTP binding domain KHQ89_02620 PF03144 Elongation factor Tu domain 2 KHQ89_02620 PF03764 Elongation factor G, domain IV KHQ89_02625 PF00009 Elongation factor Tu GTP binding domain KHQ89_02625 PF03144 Elongation factor Tu domain 2 KHQ89_02625 PF03143 Elongation factor Tu C-terminal domain KHQ89_02630 PF01026 TatD related DNase KHQ89_02635 PF13180 PDZ domain KHQ89_02640 PF02464 Competence-damaged protein KHQ89_02640 PF00994 Probable molybdopterin binding domain KHQ89_02645 PF01250 Ribosomal protein S6 KHQ89_02650 PF00436 Single-strand binding protein family KHQ89_02655 PF01084 Ribosomal protein S18 KHQ89_02660 PF03948 Ribosomal protein L9, C-terminal domain KHQ89_02660 PF01368 DHH family KHQ89_02660 PF02272 DHHA1 domain KHQ89_02660 PF01281 Ribosomal protein L9, N-terminal domain KHQ89_02665 PF00772 DnaB-like helicase N terminal domain KHQ89_02665 PF03796 DnaB-like helicase C terminal domain KHQ89_02670 PF00772 DnaB-like helicase N terminal domain KHQ89_02670 PF03796 DnaB-like helicase C terminal domain KHQ89_02680 PF00210 Ferritin-like domain KHQ89_02685 PF03462 PCRF domain KHQ89_02685 PF00472 RF-1 domain KHQ89_02690 PF13847 Methyltransferase domain KHQ89_02690 PF17827 PrmC N-terminal domain KHQ89_02695 PF03481 Putative GTP-binding controlling metal-binding KHQ89_02695 PF01300 Telomere recombination KHQ89_02710 PF02502 Ribose/Galactose Isomerase KHQ89_02730 PF00119 ATP synthase A chain KHQ89_02735 PF00137 ATP synthase subunit C KHQ89_02745 PF00213 ATP synthase delta (OSCP) subunit KHQ89_02750 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ89_02750 PF00306 ATP synthase alpha/beta chain, C terminal domain KHQ89_02750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ89_02755 PF00231 ATP synthase KHQ89_02760 PF00231 ATP synthase KHQ89_02765 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ89_02765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ89_02770 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KHQ89_02770 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KHQ89_02785 PF01205 Uncharacterized protein family UPF0029 KHQ89_02785 PF09186 Domain of unknown function (DUF1949) KHQ89_02810 PF04309 Glycerol-3-phosphate responsive antiterminator KHQ89_02815 PF01266 FAD dependent oxidoreductase KHQ89_02820 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_02830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ89_02830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ89_02850 PF00534 Glycosyl transferases group 1 KHQ89_02855 PF01743 Poly A polymerase head domain KHQ89_02855 PF13735 tRNA nucleotidyltransferase domain 2 putative KHQ89_02855 PF12627 Probable RNA and SrmB- binding site of polymerase A KHQ89_02860 PF01966 HD domain KHQ89_02885 PF00753 Metallo-beta-lactamase superfamily KHQ89_02890 PF02590 Predicted SPOUT methyltransferase KHQ89_02900 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_02910 PF03551 Transcriptional regulator PadR-like family KHQ89_02920 PF02153 Prephenate dehydrogenase KHQ89_02925 PF01761 3-dehydroquinate synthase KHQ89_02930 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ89_02940 PF08501 Shikimate dehydrogenase substrate binding domain KHQ89_02945 PF01264 Chorismate synthase KHQ89_02975 PF08676 MutL C terminal dimerisation domain KHQ89_02975 PF01119 DNA mismatch repair protein, C-terminal domain KHQ89_02985 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KHQ89_02985 PF00037 4Fe-4S binding domain KHQ89_02985 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KHQ89_02990 PF02906 Iron only hydrogenase large subunit, C-terminal domain KHQ89_02990 PF02256 Iron hydrogenase small subunit KHQ89_02990 PF12838 4Fe-4S dicluster domain KHQ89_03005 PF00356 Bacterial regulatory proteins, lacI family KHQ89_03020 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_03030 PF00232 Glycosyl hydrolase family 1 KHQ89_03035 PF01022 Bacterial regulatory protein, arsR family KHQ89_03040 PF00403 Heavy-metal-associated domain KHQ89_03045 PF00270 DEAD/DEAH box helicase KHQ89_03045 PF00271 Helicase conserved C-terminal domain KHQ89_03045 PF17191 RecG wedge domain KHQ89_03050 PF02504 Fatty acid synthesis protein KHQ89_03065 PF10576 Iron-sulfur binding domain of endonuclease III KHQ89_03065 PF00633 Helix-hairpin-helix motif KHQ89_03065 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ89_03070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KHQ89_03070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ89_03085 PF00005 ABC transporter KHQ89_03085 PF00664 ABC transporter transmembrane region KHQ89_03090 PF00664 ABC transporter transmembrane region KHQ89_03090 PF00005 ABC transporter KHQ89_03100 PF00258 Flavodoxin KHQ89_03105 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ89_03105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ89_03105 PF14579 Helix-hairpin-helix motif KHQ89_03105 PF02811 PHP domain KHQ89_03105 PF01336 OB-fold nucleic acid binding domain KHQ89_03125 PF01546 Peptidase family M20/M25/M40 KHQ89_03125 PF07687 Peptidase dimerisation domain KHQ89_03145 PF00365 Phosphofructokinase KHQ89_03150 PF00365 Phosphofructokinase KHQ89_03155 PF00391 PEP-utilising enzyme, mobile domain KHQ89_03155 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ89_03155 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KHQ89_03160 PF02690 Na+/Pi-cotransporter KHQ89_03165 PF00271 Helicase conserved C-terminal domain KHQ89_03165 PF04851 Type III restriction enzyme, res subunit KHQ89_03165 PF12344 Ultra-violet resistance protein B KHQ89_03165 PF17757 UvrB interaction domain KHQ89_03165 PF02151 UvrB/uvrC motif KHQ89_03200 PF01546 Peptidase family M20/M25/M40 KHQ89_03200 PF07687 Peptidase dimerisation domain KHQ89_03220 PF00664 ABC transporter transmembrane region KHQ89_03220 PF00005 ABC transporter KHQ89_03225 PF00664 ABC transporter transmembrane region KHQ89_03225 PF00005 ABC transporter KHQ89_03230 PF02535 ZIP Zinc transporter KHQ89_03240 PF00571 CBS domain KHQ89_03240 PF01769 Divalent cation transporter KHQ89_03240 PF03448 MgtE intracellular N domain KHQ89_03245 PF00571 CBS domain KHQ89_03245 PF01769 Divalent cation transporter KHQ89_03245 PF03448 MgtE intracellular N domain KHQ89_03255 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KHQ89_03260 PF03315 Serine dehydratase beta chain KHQ89_03260 PF03313 Serine dehydratase alpha chain KHQ89_03265 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ89_03265 PF01938 TRAM domain KHQ89_03270 PF00313 'Cold-shock' DNA-binding domain KHQ89_03275 PF00106 short chain dehydrogenase KHQ89_03280 PF00753 Metallo-beta-lactamase superfamily KHQ89_03285 PF00291 Pyridoxal-phosphate dependent enzyme KHQ89_03290 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ89_03305 PF01032 FecCD transport family KHQ89_03310 PF01032 FecCD transport family KHQ89_03315 PF00005 ABC transporter KHQ89_03320 PF01497 Periplasmic binding protein KHQ89_03335 PF01165 Ribosomal protein S21 KHQ89_03340 PF02562 PhoH-like protein KHQ89_03345 PF02130 Uncharacterized protein family UPF0054 KHQ89_03350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ89_03355 PF07650 KH domain KHQ89_03355 PF01926 50S ribosome-binding GTPase KHQ89_03365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ89_03365 PF03129 Anticodon binding domain KHQ89_03370 PF01807 CHC2 zinc finger KHQ89_03370 PF08275 DNA primase catalytic core, N-terminal domain KHQ89_03370 PF10410 DnaB-helicase binding domain of primase KHQ89_03375 PF03979 Sigma-70 factor, region 1.1 KHQ89_03375 PF04545 Sigma-70, region 4 KHQ89_03375 PF04539 Sigma-70 region 3 KHQ89_03375 PF04542 Sigma-70 region 2 KHQ89_03375 PF00140 Sigma-70 factor, region 1.2 KHQ89_03415 PF01580 FtsK/SpoIIIE family KHQ89_03415 PF09397 Ftsk gamma domain KHQ89_03415 PF17854 FtsK alpha domain KHQ89_03420 PF10502 Signal peptidase, peptidase S26 KHQ89_03425 PF01926 50S ribosome-binding GTPase KHQ89_03430 PF01351 Ribonuclease HII KHQ89_03435 PF01751 Toprim domain KHQ89_03435 PF01131 DNA topoisomerase KHQ89_03435 PF01396 Topoisomerase DNA binding C4 zinc finger KHQ89_03440 PF08534 Redoxin KHQ89_03445 PF00448 SRP54-type protein, GTPase domain KHQ89_03445 PF02881 SRP54-type protein, helical bundle domain KHQ89_03455 PF00448 SRP54-type protein, GTPase domain KHQ89_03455 PF02978 Signal peptide binding domain KHQ89_03455 PF02881 SRP54-type protein, helical bundle domain KHQ89_03460 PF00476 DNA polymerase family A KHQ89_03460 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KHQ89_03460 PF01367 5'-3' exonuclease, C-terminal SAM fold KHQ89_03465 PF06827 Zinc finger found in FPG and IleRS KHQ89_03465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KHQ89_03465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KHQ89_03470 PF01121 Dephospho-CoA kinase KHQ89_03480 PF01695 IstB-like ATP binding protein KHQ89_03480 PF07319 Primosomal protein DnaI N-terminus KHQ89_03490 PF13732 Domain of unknown function (DUF4162) KHQ89_03490 PF00005 ABC transporter KHQ89_03500 PF00005 ABC transporter KHQ89_03515 PF00391 PEP-utilising enzyme, mobile domain KHQ89_03515 PF05524 PEP-utilising enzyme, N-terminal KHQ89_03515 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ89_03520 PF10609 NUBPL iron-transfer P-loop NTPase KHQ89_03525 PF02347 Glycine cleavage system P-protein KHQ89_03530 PF02347 Glycine cleavage system P-protein KHQ89_03540 PF08669 Glycine cleavage T-protein C-terminal barrel domain KHQ89_03540 PF01571 Aminomethyltransferase folate-binding domain KHQ89_03545 PF01548 Transposase KHQ89_03545 PF02371 Transposase IS116/IS110/IS902 family KHQ89_03555 PF12146 Serine aminopeptidase, S33 KHQ89_03560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KHQ89_03560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ89_03605 PF03372 Endonuclease/Exonuclease/phosphatase family KHQ89_03610 PF13333 Integrase core domain KHQ89_03610 PF13276 HTH-like domain KHQ89_03610 PF00665 Integrase core domain KHQ89_03620 PF01425 Amidase KHQ89_03625 PF01425 Amidase KHQ89_03635 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KHQ89_03635 PF01676 Metalloenzyme superfamily KHQ89_03650 PF03952 Enolase, N-terminal domain KHQ89_03650 PF00113 Enolase, C-terminal TIM barrel domain KHQ89_03655 PF00274 Fructose-bisphosphate aldolase class-I KHQ89_03665 PF00364 Biotin-requiring enzyme KHQ89_03670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ89_03670 PF00289 Biotin carboxylase, N-terminal domain KHQ89_03670 PF02785 Biotin carboxylase C-terminal domain KHQ89_03675 PF17848 Acetyl-coA carboxylase zinc finger domain KHQ89_03675 PF01039 Carboxyl transferase domain KHQ89_03685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ89_03685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ89_03690 PF03060 Nitronate monooxygenase KHQ89_03695 PF00698 Acyl transferase domain KHQ89_03710 PF07977 FabA-like domain KHQ89_03715 PF02237 Biotin protein ligase C terminal domain KHQ89_03715 PF03099 Biotin/lipoate A/B protein ligase family KHQ89_03715 PF08279 HTH domain KHQ89_03720 PF00773 RNB domain KHQ89_03720 PF08206 Ribonuclease B OB domain KHQ89_03720 PF17876 Cold shock domain KHQ89_03720 PF00575 S1 RNA binding domain KHQ89_03725 PF01668 SmpB protein KHQ89_03740 PF13673 Acetyltransferase (GNAT) domain KHQ89_03750 PF03652 Holliday junction resolvase KHQ89_03755 PF06949 Protein of unknown function (DUF1292) KHQ89_03775 PF01596 O-methyltransferase KHQ89_03785 PF16325 Peptidase family U32 C-terminal domain KHQ89_03785 PF01136 Peptidase family U32 KHQ89_03805 PF03449 Transcription elongation factor, N-terminal KHQ89_03805 PF01272 Transcription elongation factor, GreA/GreB, C-term KHQ89_03855 PF06144 DNA polymerase III, delta subunit KHQ89_03860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ89_03860 PF14579 Helix-hairpin-helix motif KHQ89_03860 PF02811 PHP domain KHQ89_03860 PF00929 Exonuclease KHQ89_03860 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ89_03860 PF11490 DNA polymerase III polC-type N-terminus II KHQ89_03865 PF01649 Ribosomal protein S20 KHQ89_03870 PF01066 CDP-alcohol phosphatidyltransferase KHQ89_03875 PF00154 recA bacterial DNA recombination protein KHQ89_03885 PF00005 ABC transporter KHQ89_03895 PF12072 Domain of unknown function (DUF3552) KHQ89_03895 PF01966 HD domain KHQ89_03895 PF00013 KH domain KHQ89_03900 PF13277 YmdB-like protein KHQ89_03920 PF05192 MutS domain III KHQ89_03920 PF01624 MutS domain I KHQ89_03920 PF00488 MutS domain V KHQ89_03920 PF05190 MutS family domain IV KHQ89_03925 PF01119 DNA mismatch repair protein, C-terminal domain KHQ89_03925 PF08676 MutL C terminal dimerisation domain KHQ89_03935 PF01202 Shikimate kinase KHQ89_03940 PF01220 Dehydroquinase class II KHQ89_03945 PF08207 Elongation factor P (EF-P) KOW-like domain KHQ89_03945 PF09285 Elongation factor P, C-terminal KHQ89_03945 PF01132 Elongation factor P (EF-P) OB domain KHQ89_03960 PF00849 RNA pseudouridylate synthase KHQ89_03960 PF01479 S4 domain KHQ89_03965 PF02224 Cytidylate kinase KHQ89_03970 PF00575 S1 RNA binding domain KHQ89_03975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KHQ89_03975 PF01926 50S ribosome-binding GTPase KHQ89_03980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KHQ89_03980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KHQ89_03985 PF00216 Bacterial DNA-binding protein KHQ89_03995 PF02517 CPBP intramembrane metalloprotease KHQ89_04000 PF01725 Ham1 family KHQ89_04035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KHQ89_04040 PF02677 Epoxyqueuosine reductase QueH KHQ89_04075 PF00145 C-5 cytosine-specific DNA methylase KHQ89_04080 PF00145 C-5 cytosine-specific DNA methylase KHQ89_04120 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_04125 PF00005 ABC transporter KHQ89_04125 PF00571 CBS domain KHQ89_04135 PF03819 MazG nucleotide pyrophosphohydrolase domain KHQ89_04140 PF00291 Pyridoxal-phosphate dependent enzyme KHQ89_04145 PF03633 Glycosyl hydrolase family 65, C-terminal domain KHQ89_04145 PF03636 Glycosyl hydrolase family 65, N-terminal domain KHQ89_04145 PF03632 Glycosyl hydrolase family 65 central catalytic domain KHQ89_04165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KHQ89_04165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ89_04170 PF00356 Bacterial regulatory proteins, lacI family KHQ89_04185 PF02653 Branched-chain amino acid transport system / permease component KHQ89_04240 PF03551 Transcriptional regulator PadR-like family KHQ89_04240 PF10400 Virulence activator alpha C-term KHQ89_04250 PF00293 NUDIX domain KHQ89_04265 PF00005 ABC transporter KHQ89_04265 PF12848 ABC transporter KHQ89_04275 PF00403 Heavy-metal-associated domain KHQ89_04300 PF04551 GcpE protein KHQ89_04305 PF00471 Ribosomal protein L33 KHQ89_04315 PF00753 Metallo-beta-lactamase superfamily KHQ89_04320 PF00300 Histidine phosphatase superfamily (branch 1) KHQ89_04325 PF00300 Histidine phosphatase superfamily (branch 1) KHQ89_04330 PF01628 HrcA protein C terminal domain KHQ89_04335 PF01025 GrpE KHQ89_04340 PF00012 Hsp70 protein KHQ89_04345 PF00226 DnaJ domain KHQ89_04345 PF00684 DnaJ central domain KHQ89_04345 PF01556 DnaJ C terminal domain KHQ89_04350 PF03099 Biotin/lipoate A/B protein ligase family KHQ89_04350 PF10437 Bacterial lipoate protein ligase C-terminus KHQ89_04365 PF01783 Ribosomal L32p protein family KHQ89_04370 PF01795 MraW methylase family KHQ89_04375 PF02142 MGS-like domain KHQ89_04385 PF01467 Cytidylyltransferase-like KHQ89_04395 PF02540 NAD synthase KHQ89_04405 PF14490 Helix-hairpin-helix containing domain KHQ89_04405 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KHQ89_04405 PF13538 UvrD-like helicase C-terminal domain KHQ89_04410 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KHQ89_04410 PF13538 UvrD-like helicase C-terminal domain KHQ89_04410 PF14490 Helix-hairpin-helix containing domain KHQ89_04420 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ89_04420 PF00483 Nucleotidyl transferase KHQ89_04425 PF08323 Starch synthase catalytic domain KHQ89_04425 PF00534 Glycosyl transferases group 1 KHQ89_04440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KHQ89_04440 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KHQ89_04465 PF01842 ACT domain KHQ89_04465 PF00800 Prephenate dehydratase KHQ89_04465 PF01817 Chorismate mutase type II KHQ89_04480 PF01470 Pyroglutamyl peptidase KHQ89_04485 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_04485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ89_04520 PF00664 ABC transporter transmembrane region KHQ89_04520 PF00005 ABC transporter KHQ89_04525 PF00664 ABC transporter transmembrane region KHQ89_04525 PF00005 ABC transporter KHQ89_04550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ89_04585 PF00478 IMP dehydrogenase / GMP reductase domain KHQ89_04600 PF00849 RNA pseudouridylate synthase KHQ89_04600 PF01479 S4 domain KHQ89_04610 PF07859 alpha/beta hydrolase fold KHQ89_04635 PF01795 MraW methylase family KHQ89_04640 PF17151 Periplasmic sensor domain KHQ89_04640 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_04645 PF01431 Peptidase family M13 KHQ89_04645 PF05649 Peptidase family M13 KHQ89_04650 PF01431 Peptidase family M13 KHQ89_04650 PF05649 Peptidase family M13 KHQ89_04685 PF13419 Haloacid dehalogenase-like hydrolase KHQ89_04690 PF00005 ABC transporter KHQ89_04690 PF12704 MacB-like periplasmic core domain KHQ89_04690 PF02687 FtsX-like permease family KHQ89_04695 PF02687 FtsX-like permease family KHQ89_04695 PF12704 MacB-like periplasmic core domain KHQ89_04695 PF00005 ABC transporter KHQ89_04700 PF00881 Nitroreductase family KHQ89_04710 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ89_04710 PF14815 NUDIX domain KHQ89_04720 PF13411 MerR HTH family regulatory protein KHQ89_04720 PF07739 TipAS antibiotic-recognition domain KHQ89_04730 PF01702 Queuine tRNA-ribosyltransferase KHQ89_04735 PF12327 FtsZ family, C-terminal domain KHQ89_04735 PF00091 Tubulin/FtsZ family, GTPase domain KHQ89_04740 PF06071 Protein of unknown function (DUF933) KHQ89_04740 PF01926 50S ribosome-binding GTPase KHQ89_04745 PF01168 Alanine racemase, N-terminal domain KHQ89_04750 PF04472 Cell division protein SepF KHQ89_04760 PF01975 Survival protein SurE KHQ89_04780 PF01791 DeoC/LacD family aldolase KHQ89_04785 PF01048 Phosphorylase superfamily KHQ89_04800 PF00675 Insulinase (Peptidase family M16) KHQ89_04800 PF05193 Peptidase M16 inactive domain KHQ89_04805 PF00436 Single-strand binding protein family KHQ89_04810 PF01546 Peptidase family M20/M25/M40 KHQ89_04815 PF00303 Thymidylate synthase KHQ89_04820 PF00186 Dihydrofolate reductase KHQ89_04830 PF00300 Histidine phosphatase superfamily (branch 1) KHQ89_04835 PF02885 Glycosyl transferase family, helical bundle domain KHQ89_04835 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KHQ89_04835 PF00591 Glycosyl transferase family, a/b domain KHQ89_04845 PF01145 SPFH domain / Band 7 family KHQ89_04870 PF03838 Recombination protein U KHQ89_04875 PF00753 Metallo-beta-lactamase superfamily KHQ89_04875 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ89_04875 PF17770 Ribonuclease J C-terminal domain KHQ89_04880 PF02920 DNA binding domain of tn916 integrase KHQ89_04880 PF00589 Phage integrase family KHQ89_04890 PF16193 AAA C-terminal domain KHQ89_04890 PF12002 MgsA AAA+ ATPase C terminal KHQ89_04890 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ89_04895 PF00156 Phosphoribosyl transferase domain KHQ89_04900 PF02824 TGS domain KHQ89_04900 PF13291 ACT domain KHQ89_04900 PF04607 Region found in RelA / SpoT proteins KHQ89_04905 PF02580 D-Tyr-tRNA(Tyr) deacylase KHQ89_04910 PF13673 Acetyltransferase (GNAT) domain KHQ89_04910 PF13302 Acetyltransferase (GNAT) domain KHQ89_04910 PF03352 Methyladenine glycosylase KHQ89_04910 PF00117 Glutamine amidotransferase class-I KHQ89_04910 PF00958 GMP synthase C terminal domain KHQ89_04915 PF03129 Anticodon binding domain KHQ89_04915 PF13393 Histidyl-tRNA synthetase KHQ89_04920 PF02938 GAD domain KHQ89_04920 PF00152 tRNA synthetases class II (D, K and N) KHQ89_04920 PF01336 OB-fold nucleic acid binding domain KHQ89_04925 PF01625 Peptide methionine sulfoxide reductase KHQ89_04935 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ89_04935 PF13180 PDZ domain KHQ89_04945 PF01252 Signal peptidase (SPase) II KHQ89_04950 PF00849 RNA pseudouridylate synthase KHQ89_04950 PF01479 S4 domain KHQ89_04955 PF11858 Domain of unknown function (DUF3378) KHQ89_04955 PF01351 Ribonuclease HII KHQ89_04960 PF00488 MutS domain V KHQ89_04960 PF01713 Smr domain KHQ89_04965 PF00085 Thioredoxin KHQ89_04970 PF01509 TruB family pseudouridylate synthase (N terminal domain) KHQ89_04975 PF06574 FAD synthetase KHQ89_04975 PF01687 Riboflavin kinase KHQ89_04980 PF06153 Cyclic-di-AMP receptor KHQ89_04985 PF00312 Ribosomal protein S15 KHQ89_05000 PF00575 S1 RNA binding domain KHQ89_05000 PF01138 3' exoribonuclease family, domain 1 KHQ89_05000 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KHQ89_05000 PF03725 3' exoribonuclease family, domain 2 KHQ89_05010 PF00561 alpha/beta hydrolase fold KHQ89_05010 PF08386 TAP-like protein KHQ89_05015 PF01699 Sodium/calcium exchanger protein KHQ89_05020 PF01699 Sodium/calcium exchanger protein KHQ89_05025 PF00571 CBS domain KHQ89_05025 PF03471 Transporter associated domain KHQ89_05025 PF01595 Cyclin M transmembrane N-terminal domain KHQ89_05030 PF00571 CBS domain KHQ89_05030 PF03471 Transporter associated domain KHQ89_05030 PF01595 Cyclin M transmembrane N-terminal domain KHQ89_05055 PF00009 Elongation factor Tu GTP binding domain KHQ89_05055 PF03144 Elongation factor Tu domain 2 KHQ89_05055 PF06421 GTP-binding protein LepA C-terminus KHQ89_05055 PF00679 Elongation factor G C-terminus KHQ89_05060 PF01548 Transposase KHQ89_05060 PF02371 Transposase IS116/IS110/IS902 family KHQ89_05065 PF06969 HemN C-terminal domain KHQ89_05065 PF04055 Radical SAM superfamily KHQ89_05070 PF02899 Phage integrase, N-terminal SAM-like domain KHQ89_05070 PF00589 Phage integrase family KHQ89_05075 PF02899 Phage integrase, N-terminal SAM-like domain KHQ89_05075 PF00589 Phage integrase family KHQ89_05100 PF00710 Asparaginase, N-terminal KHQ89_05100 PF17763 Glutaminase/Asparaginase C-terminal domain KHQ89_05105 PF00561 alpha/beta hydrolase fold KHQ89_05110 PF00561 alpha/beta hydrolase fold KHQ89_05115 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KHQ89_05115 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KHQ89_05130 PF00005 ABC transporter KHQ89_05135 PF12399 Branched-chain amino acid ATP-binding cassette transporter KHQ89_05135 PF00005 ABC transporter KHQ89_05140 PF02653 Branched-chain amino acid transport system / permease component KHQ89_05150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ89_05150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ89_05155 PF00561 alpha/beta hydrolase fold KHQ89_05165 PF02803 Thiolase, C-terminal domain KHQ89_05165 PF00108 Thiolase, N-terminal domain KHQ89_05170 PF01012 Electron transfer flavoprotein domain KHQ89_05170 PF00766 Electron transfer flavoprotein FAD-binding domain KHQ89_05175 PF01012 Electron transfer flavoprotein domain KHQ89_05185 PF01575 MaoC like domain KHQ89_05190 PF00440 Bacterial regulatory proteins, tetR family KHQ89_05200 PF00889 Elongation factor TS KHQ89_05210 PF03129 Anticodon binding domain KHQ89_05210 PF02824 TGS domain KHQ89_05210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ89_05210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ89_05215 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ89_05215 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ89_05220 PF00204 DNA gyrase B KHQ89_05220 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ89_05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_05220 PF01751 Toprim domain KHQ89_05225 PF02660 Glycerol-3-phosphate acyltransferase KHQ89_05230 PF03672 Uncharacterised protein family (UPF0154) KHQ89_05245 PF05343 M42 glutamyl aminopeptidase KHQ89_05270 PF07498 Rho termination factor, N-terminal domain KHQ89_05270 PF00318 Ribosomal protein S2 KHQ89_05280 PF01632 Ribosomal protein L35 KHQ89_05285 PF00707 Translation initiation factor IF-3, C-terminal domain KHQ89_05285 PF05198 Translation initiation factor IF-3, N-terminal domain KHQ89_05295 PF00005 ABC transporter KHQ89_05310 PF05195 Aminopeptidase P, N-terminal domain KHQ89_05310 PF00557 Metallopeptidase family M24 KHQ89_05315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ89_05315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ89_05315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ89_05315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ89_05320 PF03309 Type III pantothenate kinase KHQ89_05330 PF00248 Aldo/keto reductase family KHQ89_05335 PF05343 M42 glutamyl aminopeptidase KHQ89_05340 PF02390 Putative methyltransferase KHQ89_05345 PF00381 PTS HPr component phosphorylation site KHQ89_05355 PF02547 Queuosine biosynthesis protein KHQ89_05360 PF17864 RuvB AAA lid domain KHQ89_05360 PF05491 RuvB C-terminal winged helix domain KHQ89_05360 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ89_05365 PF07499 RuvA, C-terminal domain KHQ89_05365 PF01330 RuvA N terminal domain KHQ89_05375 PF09269 Domain of unknown function (DUF1967) KHQ89_05375 PF01926 50S ribosome-binding GTPase KHQ89_05375 PF01018 GTP1/OBG KHQ89_05380 PF01016 Ribosomal L27 protein KHQ89_05390 PF00829 Ribosomal prokaryotic L21 protein KHQ89_05400 PF02653 Branched-chain amino acid transport system / permease component KHQ89_05405 PF02653 Branched-chain amino acid transport system / permease component KHQ89_05410 PF00005 ABC transporter KHQ89_05415 PF02608 ABC transporter substrate-binding protein PnrA-like KHQ89_05425 PF04002 RadC-like JAB domain KHQ89_05435 PF08245 Mur ligase middle domain KHQ89_05445 PF13302 Acetyltransferase (GNAT) domain KHQ89_05455 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_05460 PF01926 50S ribosome-binding GTPase KHQ89_05465 PF00004 ATPase family associated with various cellular activities (AAA) KHQ89_05465 PF02190 ATP-dependent protease La (LON) substrate-binding domain KHQ89_05465 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ89_05470 PF05697 Bacterial trigger factor protein (TF) KHQ89_05470 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ89_05470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KHQ89_05475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KHQ89_05475 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ89_05475 PF05697 Bacterial trigger factor protein (TF) KHQ89_05500 PF13614 AAA domain KHQ89_05510 PF00360 Phytochrome region KHQ89_05510 PF00563 EAL domain KHQ89_05510 PF01590 GAF domain KHQ89_05510 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_05515 PF01063 Amino-transferase class IV KHQ89_05530 PF01116 Fructose-bisphosphate aldolase class-II KHQ89_05550 PF07385 D-lyxose isomerase KHQ89_05560 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_05565 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_05605 PF00356 Bacterial regulatory proteins, lacI family KHQ89_05610 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ89_05610 PF00483 Nucleotidyl transferase KHQ89_05615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ89_05615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ89_05615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ89_05615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ89_05620 PF01380 SIS domain KHQ89_05630 PF03102 NeuB family KHQ89_05630 PF08666 SAF domain KHQ89_05640 PF01943 Polysaccharide biosynthesis protein KHQ89_05645 PF16363 GDP-mannose 4,6 dehydratase KHQ89_05650 PF01050 Mannose-6-phosphate isomerase KHQ89_05650 PF00483 Nucleotidyl transferase KHQ89_05665 PF16363 GDP-mannose 4,6 dehydratase KHQ89_05670 PF04321 RmlD substrate binding domain KHQ89_05675 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KHQ89_05680 PF00483 Nucleotidyl transferase KHQ89_05685 PF00534 Glycosyl transferases group 1 KHQ89_05685 PF13439 Glycosyltransferase Family 4 KHQ89_05700 PF13477 Glycosyl transferase 4-like KHQ89_05700 PF00534 Glycosyl transferases group 1 KHQ89_05730 PF02397 Bacterial sugar transferase KHQ89_05735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KHQ89_05765 PF02899 Phage integrase, N-terminal SAM-like domain KHQ89_05765 PF00589 Phage integrase family KHQ89_05770 PF02899 Phage integrase, N-terminal SAM-like domain KHQ89_05770 PF00589 Phage integrase family KHQ89_05820 PF01527 Transposase KHQ89_05825 PF00665 Integrase core domain KHQ89_05825 PF13333 Integrase core domain KHQ89_05830 PF02719 Polysaccharide biosynthesis protein KHQ89_05845 PF00909 Ammonium Transporter Family KHQ89_05850 PF01238 Phosphomannose isomerase type I KHQ89_05860 PF02371 Transposase IS116/IS110/IS902 family KHQ89_05860 PF01548 Transposase KHQ89_05880 PF05684 Protein of unknown function (DUF819) KHQ89_05925 PF00356 Bacterial regulatory proteins, lacI family KHQ89_05945 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_05950 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_05970 PF01938 TRAM domain KHQ89_05970 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ89_05975 PF00296 Luciferase-like monooxygenase KHQ89_05980 PF13556 PucR C-terminal helix-turn-helix domain KHQ89_05980 PF05651 Putative sugar diacid recognition KHQ89_05980 PF17853 GGDEF-like domain KHQ89_05990 PF17912 MalK OB fold domain KHQ89_05990 PF03459 TOBE domain KHQ89_05990 PF00005 ABC transporter KHQ89_06000 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_06010 PF00534 Glycosyl transferases group 1 KHQ89_06015 PF00128 Alpha amylase, catalytic domain KHQ89_06020 PF02595 Glycerate kinase family KHQ89_06025 PF16736 Single Cache-like KHQ89_06025 PF00989 PAS fold KHQ89_06025 PF00512 His Kinase A (phospho-acceptor) domain KHQ89_06025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ89_06030 PF00486 Transcriptional regulatory protein, C terminal KHQ89_06030 PF00072 Response regulator receiver domain KHQ89_06035 PF00005 ABC transporter KHQ89_06040 PF00871 Acetokinase family KHQ89_06045 PF03006 Haemolysin-III related KHQ89_06050 PF00248 Aldo/keto reductase family KHQ89_06055 PF00588 SpoU rRNA Methylase family KHQ89_06060 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KHQ89_06060 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KHQ89_06060 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KHQ89_06065 PF03883 Peroxide stress protein YaaA KHQ89_06070 PF13091 PLD-like domain KHQ89_06105 PF00750 tRNA synthetases class I (R) KHQ89_06105 PF05746 DALR anticodon binding domain KHQ89_06105 PF03485 Arginyl tRNA synthetase N terminal domain KHQ89_06115 PF10397 Adenylosuccinate lyase C-terminus KHQ89_06115 PF00206 Lyase KHQ89_06120 PF00709 Adenylosuccinate synthetase KHQ89_06125 PF00534 Glycosyl transferases group 1 KHQ89_06125 PF08323 Starch synthase catalytic domain KHQ89_06140 PF01261 Xylose isomerase-like TIM barrel KHQ89_06145 PF00270 DEAD/DEAH box helicase KHQ89_06145 PF00271 Helicase conserved C-terminal domain KHQ89_06150 PF02401 LytB protein KHQ89_06165 PF11799 impB/mucB/samB family C-terminal domain KHQ89_06165 PF11798 IMS family HHH motif KHQ89_06165 PF00817 impB/mucB/samB family KHQ89_06175 PF02463 RecF/RecN/SMC N terminal domain KHQ89_06180 PF01728 FtsJ-like methyltransferase KHQ89_06180 PF01479 S4 domain KHQ89_06185 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KHQ89_06185 PF02779 Transketolase, pyrimidine binding domain KHQ89_06185 PF02780 Transketolase, C-terminal domain KHQ89_06190 PF02609 Exonuclease VII small subunit KHQ89_06195 PF13742 OB-fold nucleic acid binding domain KHQ89_06195 PF02601 Exonuclease VII, large subunit KHQ89_06200 PF02601 Exonuclease VII, large subunit KHQ89_06200 PF13742 OB-fold nucleic acid binding domain KHQ89_06205 PF01029 NusB family KHQ89_06210 PF13185 GAF domain KHQ89_06210 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_06240 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_06245 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_06250 PF00005 ABC transporter KHQ89_06250 PF08402 TOBE domain KHQ89_06335 PF00563 EAL domain KHQ89_06335 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_06335 PF03707 Bacterial signalling protein N terminal repeat KHQ89_06340 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_06340 PF01590 GAF domain KHQ89_06340 PF00563 EAL domain KHQ89_06340 PF00360 Phytochrome region KHQ89_06345 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KHQ89_06345 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KHQ89_06350 PF00293 NUDIX domain KHQ89_06355 PF01554 MatE KHQ89_06360 PF01554 MatE KHQ89_06380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ89_06385 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ89_06395 PF04397 LytTr DNA-binding domain KHQ89_06395 PF00072 Response regulator receiver domain KHQ89_06400 PF02386 Cation transport protein KHQ89_06405 PF02080 TrkA-C domain KHQ89_06405 PF02254 TrkA-N domain KHQ89_06425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ89_06440 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KHQ89_06440 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KHQ89_06445 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KHQ89_06445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ89_06470 PF00625 Guanylate kinase KHQ89_06475 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ89_06480 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_06485 PF00005 ABC transporter KHQ89_06490 PF14602 Hexapeptide repeat of succinyl-transferase KHQ89_06490 PF12464 Maltose acetyltransferase KHQ89_06495 PF09962 Uncharacterized conserved protein (DUF2196) KHQ89_06510 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_06515 PF02734 DAK2 domain KHQ89_06515 PF13684 Dihydroxyacetone kinase family KHQ89_06540 PF12848 ABC transporter KHQ89_06540 PF00005 ABC transporter KHQ89_06565 PF13276 HTH-like domain KHQ89_06565 PF00665 Integrase core domain KHQ89_06565 PF13333 Integrase core domain KHQ89_06570 PF03358 NADPH-dependent FMN reductase KHQ89_06575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KHQ89_06580 PF01638 HxlR-like helix-turn-helix KHQ89_06625 PF13784 Fic/DOC family N-terminal KHQ89_06625 PF02661 Fic/DOC family KHQ89_06690 PF00872 Transposase, Mutator family KHQ89_06705 PF01022 Bacterial regulatory protein, arsR family KHQ89_06740 PF00255 Glutathione peroxidase KHQ89_06745 PF07969 Amidohydrolase family KHQ89_06765 PF03051 Peptidase C1-like family KHQ89_06795 PF13180 PDZ domain KHQ89_06795 PF03572 Peptidase family S41 KHQ89_06795 PF01471 Putative peptidoglycan binding domain KHQ89_06805 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ89_06805 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ89_06810 PF00472 RF-1 domain KHQ89_06810 PF03462 PCRF domain KHQ89_06815 PF07517 SecA DEAD-like domain KHQ89_06815 PF01043 SecA preprotein cross-linking domain KHQ89_06815 PF02810 SEC-C motif KHQ89_06815 PF07516 SecA Wing and Scaffold domain KHQ89_06830 PF02773 S-adenosylmethionine synthetase, C-terminal domain KHQ89_06830 PF00438 S-adenosylmethionine synthetase, N-terminal domain KHQ89_06830 PF02772 S-adenosylmethionine synthetase, central domain KHQ89_06845 PF04608 Phosphatidylglycerophosphatase A KHQ89_06850 PF00551 Formyl transferase KHQ89_06850 PF02911 Formyl transferase, C-terminal domain KHQ89_06855 PF04851 Type III restriction enzyme, res subunit KHQ89_06855 PF18074 Primosomal protein N C-terminal domain KHQ89_06855 PF17764 3′ DNA-binding domain (3′BD) KHQ89_06855 PF00271 Helicase conserved C-terminal domain KHQ89_06855 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KHQ89_06860 PF02033 Ribosome-binding factor A KHQ89_06875 PF04296 Protein of unknown function (DUF448) KHQ89_06880 PF13184 NusA-like KH domain KHQ89_06880 PF08529 NusA N-terminal domain KHQ89_06885 PF02576 RimP N-terminal domain KHQ89_06885 PF17384 RimP C-terminal SH3 domain KHQ89_06900 PF00005 ABC transporter KHQ89_06905 PF00950 ABC 3 transport family KHQ89_06915 PF00248 Aldo/keto reductase family KHQ89_06930 PF01467 Cytidylyltransferase-like KHQ89_06940 PF17770 Ribonuclease J C-terminal domain KHQ89_06940 PF00753 Metallo-beta-lactamase superfamily KHQ89_06940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ89_06950 PF08459 UvrC Helix-hairpin-helix N-terminal KHQ89_06950 PF02151 UvrB/uvrC motif KHQ89_06950 PF01541 GIY-YIG catalytic domain KHQ89_06955 PF01192 RNA polymerase Rpb6 KHQ89_06960 PF00625 Guanylate kinase KHQ89_06965 PF05670 NFACT protein RNA binding domain KHQ89_06970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KHQ89_06970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KHQ89_06975 PF00999 Sodium/hydrogen exchanger family KHQ89_06980 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KHQ89_06980 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KHQ89_06995 PF01809 Putative membrane protein insertion efficiency factor KHQ89_07000 PF01813 ATP synthase subunit D KHQ89_07005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ89_07005 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ89_07030 PF01496 V-type ATPase 116kDa subunit family KHQ89_07050 PF03129 Anticodon binding domain KHQ89_07050 PF09180 Prolyl-tRNA synthetase, C-terminal KHQ89_07050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ89_07060 PF17783 CvfB-like winged helix domain KHQ89_07060 PF13509 S1 domain KHQ89_07065 PF17783 CvfB-like winged helix domain KHQ89_07065 PF13509 S1 domain KHQ89_07070 PF02661 Fic/DOC family KHQ89_07075 PF00313 'Cold-shock' DNA-binding domain KHQ89_07080 PF00664 ABC transporter transmembrane region KHQ89_07080 PF00005 ABC transporter KHQ89_07085 PF00664 ABC transporter transmembrane region KHQ89_07085 PF00005 ABC transporter KHQ89_07125 PF04167 Protein of unknown function (DUF402) KHQ89_07130 PF00293 NUDIX domain KHQ89_07135 PF01758 Sodium Bile acid symporter family KHQ89_07165 PF00005 ABC transporter KHQ89_07190 PF02254 TrkA-N domain KHQ89_07190 PF07885 Ion channel KHQ89_07260 PF13684 Dihydroxyacetone kinase family KHQ89_07260 PF02734 DAK2 domain KHQ89_07265 PF02734 DAK2 domain KHQ89_07265 PF13684 Dihydroxyacetone kinase family KHQ89_07270 PF00830 Ribosomal L28 family KHQ89_07275 PF02872 5'-nucleotidase, C-terminal domain KHQ89_07275 PF00149 Calcineurin-like phosphoesterase KHQ89_07285 PF00834 Ribulose-phosphate 3 epimerase family KHQ89_07290 PF03193 RsgA GTPase KHQ89_07295 PF04055 Radical SAM superfamily KHQ89_07300 PF03483 B3/4 domain KHQ89_07300 PF03147 Ferredoxin-fold anticodon binding domain KHQ89_07300 PF01588 Putative tRNA binding domain KHQ89_07300 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KHQ89_07300 PF03484 tRNA synthetase B5 domain KHQ89_07305 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KHQ89_07305 PF01588 Putative tRNA binding domain KHQ89_07305 PF03147 Ferredoxin-fold anticodon binding domain KHQ89_07305 PF03484 tRNA synthetase B5 domain KHQ89_07305 PF03483 B3/4 domain KHQ89_07320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ89_07320 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ89_07320 PF14579 Helix-hairpin-helix motif KHQ89_07320 PF14480 DNA polymerase III polC-type N-terminus I KHQ89_07320 PF02811 PHP domain KHQ89_07320 PF01336 OB-fold nucleic acid binding domain KHQ89_07320 PF00929 Exonuclease KHQ89_07320 PF11490 DNA polymerase III polC-type N-terminus II KHQ89_07325 PF14480 DNA polymerase III polC-type N-terminus I KHQ89_07325 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ89_07325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ89_07325 PF14579 Helix-hairpin-helix motif KHQ89_07325 PF02811 PHP domain KHQ89_07325 PF00929 Exonuclease KHQ89_07325 PF11490 DNA polymerase III polC-type N-terminus II KHQ89_07335 PF16199 Radical_SAM C-terminal domain KHQ89_07335 PF04055 Radical SAM superfamily KHQ89_07340 PF06962 Putative rRNA methylase KHQ89_07350 PF12791 Anti-sigma factor N-terminus KHQ89_07375 PF02446 4-alpha-glucanotransferase KHQ89_07380 PF16657 Maltogenic Amylase, C-terminal domain KHQ89_07380 PF00128 Alpha amylase, catalytic domain KHQ89_07385 PF16657 Maltogenic Amylase, C-terminal domain KHQ89_07385 PF02903 Alpha amylase, N-terminal ig-like domain KHQ89_07385 PF00128 Alpha amylase, catalytic domain KHQ89_07395 PF00356 Bacterial regulatory proteins, lacI family KHQ89_07400 PF00128 Alpha amylase, catalytic domain KHQ89_07400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ89_07400 PF02806 Alpha amylase, C-terminal all-beta domain KHQ89_07405 PF17999 Pullulanase N1-terminal domain KHQ89_07405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ89_07405 PF00128 Alpha amylase, catalytic domain KHQ89_07410 PF00128 Alpha amylase, catalytic domain KHQ89_07425 PF11941 Domain of unknown function (DUF3459) KHQ89_07425 PF00128 Alpha amylase, catalytic domain KHQ89_07435 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_07440 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_07465 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KHQ89_07465 PF00128 Alpha amylase, catalytic domain KHQ89_07465 PF03714 Bacterial pullanase-associated domain KHQ89_07475 PF02417 Chromate transporter KHQ89_07505 PF01641 SelR domain KHQ89_07510 PF04608 Phosphatidylglycerophosphatase A KHQ89_07520 PF00690 Cation transporter/ATPase, N-terminus KHQ89_07520 PF00689 Cation transporting ATPase, C-terminus KHQ89_07525 PF01546 Peptidase family M20/M25/M40 KHQ89_07525 PF07687 Peptidase dimerisation domain KHQ89_07530 PF14602 Hexapeptide repeat of succinyl-transferase KHQ89_07530 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KHQ89_07530 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ89_07535 PF05173 Dihydrodipicolinate reductase, C-terminus KHQ89_07535 PF01113 Dihydrodipicolinate reductase, N-terminus KHQ89_07540 PF00701 Dihydrodipicolinate synthetase family KHQ89_07545 PF01118 Semialdehyde dehydrogenase, NAD binding domain KHQ89_07545 PF02774 Semialdehyde dehydrogenase, dimerisation domain KHQ89_07550 PF01678 Diaminopimelate epimerase KHQ89_07555 PF13840 ACT domain KHQ89_07555 PF00696 Amino acid kinase family KHQ89_07560 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KHQ89_07560 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KHQ89_07565 PF13419 Haloacid dehalogenase-like hydrolase KHQ89_07575 PF01451 Low molecular weight phosphotyrosine protein phosphatase KHQ89_07580 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ89_07580 PF02861 Clp amino terminal domain, pathogenicity island component KHQ89_07580 PF07724 AAA domain (Cdc48 subfamily) KHQ89_07580 PF00004 ATPase family associated with various cellular activities (AAA) KHQ89_07580 PF17871 AAA lid domain KHQ89_07605 PF07676 WD40-like Beta Propeller Repeat KHQ89_07605 PF00326 Prolyl oligopeptidase family KHQ89_07610 PF02073 Thermophilic metalloprotease (M29) KHQ89_07620 PF02645 Uncharacterised protein, DegV family COG1307 KHQ89_07630 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_07635 PF00005 ABC transporter KHQ89_07650 PF09297 NADH pyrophosphatase zinc ribbon domain KHQ89_07650 PF00293 NUDIX domain KHQ89_07675 PF00072 Response regulator receiver domain KHQ89_07675 PF00990 Diguanylate cyclase, GGDEF domain KHQ89_07680 PF01381 Helix-turn-helix KHQ89_07725 PF00005 ABC transporter KHQ89_07730 PF00005 ABC transporter KHQ89_07750 PF04227 Indigoidine synthase A like protein KHQ89_07755 PF00294 pfkB family carbohydrate kinase KHQ89_07775 PF01252 Signal peptidase (SPase) II KHQ89_07785 PF01022 Bacterial regulatory protein, arsR family KHQ89_07795 PF01022 Bacterial regulatory protein, arsR family KHQ89_07820 PF00665 Integrase core domain KHQ89_07820 PF13333 Integrase core domain KHQ89_07855 PF01048 Phosphorylase superfamily KHQ89_07860 PF00485 Phosphoribulokinase / Uridine kinase family KHQ89_07905 PF02163 Peptidase family M50 KHQ89_07905 PF13180 PDZ domain KHQ89_07910 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KHQ89_07910 PF13288 DXP reductoisomerase C-terminal domain KHQ89_07910 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KHQ89_07920 PF01255 Putative undecaprenyl diphosphate synthase KHQ89_07925 PF01765 Ribosome recycling factor KHQ89_07930 PF00696 Amino acid kinase family KHQ89_07935 PF00889 Elongation factor TS KHQ89_07940 PF00318 Ribosomal protein S2 KHQ89_07940 PF07498 Rho termination factor, N-terminal domain KHQ89_07950 PF00692 dUTPase KHQ89_07955 PF02899 Phage integrase, N-terminal SAM-like domain KHQ89_07955 PF00589 Phage integrase family KHQ89_07960 PF01134 Glucose inhibited division protein A KHQ89_07970 PF03167 Uracil DNA glycosylase superfamily KHQ89_08005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KHQ89_08005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KHQ89_08020 PF03960 ArsC family KHQ89_08025 PF01432 Peptidase family M3 KHQ89_08025 PF08439 Oligopeptidase F KHQ89_08035 PF13419 Haloacid dehalogenase-like hydrolase KHQ89_08050 PF00356 Bacterial regulatory proteins, lacI family KHQ89_08055 PF01245 Ribosomal protein L19 KHQ89_08060 PF01746 tRNA (Guanine-1)-methyltransferase KHQ89_08065 PF05239 PRC-barrel domain KHQ89_08065 PF01782 RimM N-terminal domain KHQ89_08075 PF00886 Ribosomal protein S16 KHQ89_08090 PF00849 RNA pseudouridylate synthase KHQ89_08090 PF01479 S4 domain KHQ89_08095 PF01327 Polypeptide deformylase KHQ89_08105 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ89_08105 PF00588 SpoU rRNA Methylase family KHQ89_08110 PF02926 THUMP domain KHQ89_08110 PF02568 Thiamine biosynthesis protein (ThiI) KHQ89_08115 PF13185 GAF domain KHQ89_08120 PF00163 Ribosomal protein S4/S9 N-terminal domain KHQ89_08120 PF01479 S4 domain KHQ89_08125 PF00121 Triosephosphate isomerase KHQ89_08130 PF00381 PTS HPr component phosphorylation site KHQ89_08135 PF01381 Helix-turn-helix KHQ89_08140 PF00162 Phosphoglycerate kinase KHQ89_08150 PF17912 MalK OB fold domain KHQ89_08150 PF00005 ABC transporter KHQ89_08150 PF03459 TOBE domain KHQ89_08155 PF17853 GGDEF-like domain KHQ89_08155 PF13556 PucR C-terminal helix-turn-helix domain KHQ89_08155 PF07905 Purine catabolism regulatory protein-like family KHQ89_08175 PF01592 NifU-like N terminal domain KHQ89_08180 PF00266 Aminotransferase class-V KHQ89_08185 PF01458 Uncharacterized protein family (UPF0051) KHQ89_08190 PF00005 ABC transporter KHQ89_08215 PF00005 ABC transporter KHQ89_08215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ89_08220 PF00005 ABC transporter KHQ89_08220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ89_08225 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ89_08225 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_08230 PF00528 Binding-protein-dependent transport system inner membrane component KHQ89_08245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ89_08255 PF00578 AhpC/TSA family KHQ89_08270 PF00027 Cyclic nucleotide-binding domain KHQ89_08270 PF13545 Crp-like helix-turn-helix domain KHQ89_08275 PF00403 Heavy-metal-associated domain KHQ89_08320 PF02796 Helix-turn-helix domain of resolvase KHQ89_08320 PF00239 Resolvase, N terminal domain KHQ89_08340 PF00268 Ribonucleotide reductase, small chain KHQ89_08345 PF00317 Ribonucleotide reductase, all-alpha domain KHQ89_08345 PF02867 Ribonucleotide reductase, barrel domain KHQ89_08345 PF08343 Ribonucleotide reductase N-terminal