locus-tag class description RPIT_00010 PF01507 Phosphoadenosine phosphosulfate reductase family RPIT_00015 PF00009 Elongation factor Tu GTP binding domain RPIT_00020 PF01925 Sulfite exporter TauE/SafE RPIT_00030 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RPIT_00030 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RPIT_00030 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RPIT_00035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RPIT_00040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RPIT_00040 PF10414 Sirohaem synthase dimerisation region RPIT_00045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RPIT_00045 PF14824 Sirohaem biosynthesis protein central RPIT_00045 PF10414 Sirohaem synthase dimerisation region RPIT_00055 PF02436 Conserved carboxylase domain RPIT_00055 PF00364 Biotin-requiring enzyme RPIT_00055 PF00682 HMGL-like RPIT_00070 PF02872 5'-nucleotidase, C-terminal domain RPIT_00070 PF00149 Calcineurin-like phosphoesterase RPIT_00085 PF13472 GDSL-like Lipase/Acylhydrolase family RPIT_00100 PF00472 RF-1 domain RPIT_00100 PF03462 PCRF domain RPIT_00105 PF01661 Macro domain RPIT_00115 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RPIT_00140 PF00722 Glycosyl hydrolases family 16 RPIT_00160 PF01068 ATP dependent DNA ligase domain RPIT_00160 PF04679 ATP dependent DNA ligase C terminal region RPIT_00175 PF01068 ATP dependent DNA ligase domain RPIT_00175 PF04679 ATP dependent DNA ligase C terminal region RPIT_00200 PF02903 Alpha amylase, N-terminal ig-like domain RPIT_00200 PF00128 Alpha amylase, catalytic domain RPIT_00225 PF00872 Transposase, Mutator family RPIT_00310 PF08768 Domain of unknown function (DUF1794) RPIT_00325 PF00512 His Kinase A (phospho-acceptor) domain RPIT_00325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_00325 PF00672 HAMP domain RPIT_00330 PF00486 Transcriptional regulatory protein, C terminal RPIT_00330 PF00072 Response regulator receiver domain RPIT_00335 PF01451 Low molecular weight phosphotyrosine protein phosphatase RPIT_00340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RPIT_00340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RPIT_00345 PF00565 Staphylococcal nuclease homologue RPIT_00345 PF02872 5'-nucleotidase, C-terminal domain RPIT_00345 PF00746 LPXTG cell wall anchor motif RPIT_00345 PF00149 Calcineurin-like phosphoesterase RPIT_00350 PF00676 Dehydrogenase E1 component RPIT_00355 PF02779 Transketolase, pyrimidine binding domain RPIT_00355 PF02780 Transketolase, C-terminal domain RPIT_00360 PF02817 e3 binding domain RPIT_00360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RPIT_00360 PF00364 Biotin-requiring enzyme RPIT_00370 PF00842 Alanine racemase, C-terminal domain RPIT_00370 PF01168 Alanine racemase, N-terminal domain RPIT_00380 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RPIT_00385 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RPIT_00385 PF06827 Zinc finger found in FPG and IleRS RPIT_00415 PF01842 ACT domain RPIT_00415 PF00800 Prephenate dehydratase RPIT_00420 PF00781 Diacylglycerol kinase catalytic domain RPIT_00425 PF07690 Major Facilitator Superfamily RPIT_00430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RPIT_00430 PF02403 Seryl-tRNA synthetase N-terminal domain RPIT_00440 PF01965 DJ-1/PfpI family RPIT_00445 PF00128 Alpha amylase, catalytic domain RPIT_00445 PF16657 Maltogenic Amylase, C-terminal domain RPIT_00450 PF00296 Luciferase-like monooxygenase RPIT_00465 PF00764 Arginosuccinate synthase RPIT_00485 PF00535 Glycosyl transferase family 2 RPIT_00495 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RPIT_00495 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RPIT_00495 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RPIT_00500 PF12833 Helix-turn-helix domain RPIT_00500 PF06445 GyrI-like small molecule binding domain RPIT_00530 PF14524 Wzt C-terminal domain RPIT_00530 PF00005 ABC transporter RPIT_00545 PF02350 UDP-N-acetylglucosamine 2-epimerase RPIT_00550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RPIT_00550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RPIT_00550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RPIT_00575 PF00535 Glycosyl transferase family 2 RPIT_00580 PF00132 Bacterial transferase hexapeptide (six repeats) RPIT_00585 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RPIT_00590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_00590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RPIT_00595 PF00155 Aminotransferase class I and II RPIT_00600 PF00107 Zinc-binding dehydrogenase RPIT_00600 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_00605 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RPIT_00605 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RPIT_00605 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RPIT_00615 PF00107 Zinc-binding dehydrogenase RPIT_00615 PF00698 Acyl transferase domain RPIT_00615 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_00615 PF00109 Beta-ketoacyl synthase, N-terminal domain RPIT_00615 PF08659 KR domain RPIT_00615 PF16197 Ketoacyl-synthetase C-terminal extension RPIT_00615 PF02801 Beta-ketoacyl synthase, C-terminal domain RPIT_00615 PF14765 Polyketide synthase dehydratase RPIT_00615 PF00550 Phosphopantetheine attachment site RPIT_00620 PF00342 Phosphoglucose isomerase RPIT_00625 PF02698 DUF218 domain RPIT_00630 PF02386 Cation transport protein RPIT_00635 PF02254 TrkA-N domain RPIT_00635 PF02080 TrkA-C domain RPIT_00640 PF00455 DeoR C terminal sensor domain RPIT_00640 PF08220 DeoR-like helix-turn-helix domain RPIT_00650 PF05746 DALR anticodon binding domain RPIT_00650 PF03485 Arginyl tRNA synthetase N terminal domain RPIT_00650 PF00750 tRNA synthetases class I (R) RPIT_00655 PF00480 ROK family RPIT_00670 PF08044 Domain of unknown function (DUF1707) RPIT_00675 PF00365 Phosphofructokinase RPIT_00680 PF01565 FAD binding domain RPIT_00680 PF02913 FAD linked oxidases, C-terminal domain RPIT_00690 PF07555 beta-N-acetylglucosaminidase RPIT_00690 PF00041 Fibronectin type III domain RPIT_00690 PF00963 Cohesin domain RPIT_00690 PF00754 F5/8 type C domain RPIT_00690 PF02838 Glycosyl hydrolase family 20, domain 2 RPIT_00715 PF03180 NLPA lipoprotein RPIT_00720 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_00725 PF09383 NIL domain RPIT_00725 PF00005 ABC transporter RPIT_00740 PF01068 ATP dependent DNA ligase domain RPIT_00745 PF01914 MarC family integral membrane protein RPIT_00750 PF01546 Peptidase family M20/M25/M40 RPIT_00750 PF07687 Peptidase dimerisation domain RPIT_00755 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RPIT_00755 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RPIT_00760 PF00300 Histidine phosphatase superfamily (branch 1) RPIT_00770 PF00916 Sulfate permease family RPIT_00770 PF01740 STAS domain RPIT_00780 PF08468 Methyltransferase small domain N-terminal RPIT_00780 PF05175 Methyltransferase small domain RPIT_00800 PF02638 Glycosyl hydrolase-like 10 RPIT_00805 PF18011 C-terminal domain found in long catalases RPIT_00805 PF06628 Catalase-related immune-responsive RPIT_00805 PF00199 Catalase RPIT_00815 PF00067 Cytochrome P450 RPIT_00845 PF00069 Protein kinase domain RPIT_00850 PF03372 Endonuclease/Exonuclease/phosphatase family RPIT_00860 PF01734 Patatin-like phospholipase RPIT_00895 PF00356 Bacterial regulatory proteins, lacI family RPIT_00900 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RPIT_00900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_00910 PF00860 Permease family RPIT_00930 PF00746 LPXTG cell wall anchor motif RPIT_00930 PF00565 Staphylococcal nuclease homologue RPIT_00930 PF02872 5'-nucleotidase, C-terminal domain RPIT_00930 PF00149 Calcineurin-like phosphoesterase RPIT_01000 PF06480 FtsH Extracellular RPIT_01000 PF17862 AAA+ lid domain RPIT_01000 PF00004 ATPase family associated with various cellular activities (AAA) RPIT_01000 PF01434 Peptidase family M41 RPIT_01020 PF00392 Bacterial regulatory proteins, gntR family RPIT_01020 PF07729 FCD domain RPIT_01035 PF00196 Bacterial regulatory proteins, luxR family RPIT_01035 PF00072 Response regulator receiver domain RPIT_01040 PF07730 Histidine kinase RPIT_01050 PF00005 ABC transporter RPIT_01065 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_01070 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_01075 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RPIT_01075 PF16353 Domain of unknown function(DUF4981) RPIT_01075 PF02929 Beta galactosidase small chain RPIT_01075 PF02837 Glycosyl hydrolases family 2, sugar binding domain RPIT_01080 PF00356 Bacterial regulatory proteins, lacI family RPIT_01105 PF13344 Haloacid dehalogenase-like hydrolase RPIT_01110 PF13183 4Fe-4S dicluster domain RPIT_01110 PF02754 Cysteine-rich domain RPIT_01115 PF00890 FAD binding domain RPIT_01120 PF01266 FAD dependent oxidoreductase RPIT_01120 PF04324 BFD-like [2Fe-2S] binding domain RPIT_01200 PF12169 DNA polymerase III subunits gamma and tau domain III RPIT_01205 PF02575 YbaB/EbfC DNA-binding family RPIT_01210 PF02132 RecR protein RPIT_01210 PF13662 Toprim domain RPIT_01220 PF00392 Bacterial regulatory proteins, gntR family RPIT_01225 PF01680 SOR/SNZ family RPIT_01230 PF01174 SNO glutamine amidotransferase family RPIT_01235 PF00005 ABC transporter RPIT_01250 PF03949 Malic enzyme, NAD binding domain RPIT_01250 PF00390 Malic enzyme, N-terminal domain RPIT_01260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RPIT_01260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_01265 PF13344 Haloacid dehalogenase-like hydrolase RPIT_01270 PF00381 PTS HPr component phosphorylation site RPIT_01280 PF00462 Glutaredoxin RPIT_01285 PF01569 PAP2 superfamily RPIT_01290 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RPIT_01290 PF00591 Glycosyl transferase family, a/b domain RPIT_01290 PF02885 Glycosyl transferase family, helical bundle domain RPIT_01295 PF13407 Periplasmic binding protein domain RPIT_01300 PF00005 ABC transporter RPIT_01305 PF02653 Branched-chain amino acid transport system / permease component RPIT_01320 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RPIT_01320 PF02018 Carbohydrate binding domain RPIT_01330 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RPIT_01330 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RPIT_01360 PF00912 Transglycosylase RPIT_01360 PF00905 Penicillin binding protein transpeptidase domain RPIT_01365 PF02467 Transcription factor WhiB RPIT_01370 PF00293 NUDIX domain RPIT_01375 PF08534 Redoxin RPIT_01380 PF10576 Iron-sulfur binding domain of endonuclease III RPIT_01380 PF00730 HhH-GPD superfamily base excision DNA repair protein RPIT_01380 PF00633 Helix-hairpin-helix motif RPIT_01395 PF08241 Methyltransferase domain RPIT_01405 PF00437 Type II/IV secretion system protein RPIT_01420 PF00271 Helicase conserved C-terminal domain RPIT_01420 PF00270 DEAD/DEAH box helicase RPIT_01420 PF09369 Domain of unknown function (DUF1998) RPIT_01440 PF00248 Aldo/keto reductase family RPIT_01445 PF17827 PrmC N-terminal domain RPIT_01445 PF05175 Methyltransferase small domain RPIT_01450 PF00005 ABC transporter RPIT_01455 PF01131 DNA topoisomerase RPIT_01455 PF01751 Toprim domain RPIT_01455 PF13368 Topoisomerase C-terminal repeat RPIT_01465 PF02223 Thymidylate kinase RPIT_01475 PF12169 DNA polymerase III subunits gamma and tau domain III RPIT_01485 PF04468 PSP1 C-terminal conserved region RPIT_01490 PF00561 alpha/beta hydrolase fold RPIT_01500 PF01593 Flavin containing amine oxidoreductase RPIT_01510 PF00543 Nitrogen regulatory protein P-II RPIT_01515 PF00909 Ammonium Transporter Family RPIT_01530 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RPIT_01535 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RPIT_01540 PF00719 Inorganic pyrophosphatase RPIT_01545 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RPIT_01555 PF01171 PP-loop family RPIT_01555 PF09179 TilS substrate binding domain RPIT_01570 PF01227 GTP cyclohydrolase I RPIT_01575 PF00809 Pterin binding enzyme RPIT_01580 PF02152 Dihydroneopterin aldolase RPIT_01585 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RPIT_01595 PF00809 Pterin binding enzyme RPIT_01605 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RPIT_01615 PF10431 C-terminal, D2-small domain, of ClpB protein RPIT_01615 PF00004 ATPase family associated with various cellular activities (AAA) RPIT_01615 PF02861 Clp amino terminal domain, pathogenicity island component RPIT_01615 PF07724 AAA domain (Cdc48 subfamily) RPIT_01615 PF17871 AAA lid domain RPIT_01625 PF00005 ABC transporter RPIT_01625 PF08402 TOBE domain RPIT_01650 PF13411 MerR HTH family regulatory protein RPIT_01655 PF06745 KaiC RPIT_01655 PF18073 Rubredoxin metal binding domain RPIT_01680 PF01118 Semialdehyde dehydrogenase, NAD binding domain RPIT_01680 PF02774 Semialdehyde dehydrogenase, dimerisation domain RPIT_01685 PF14748 Pyrroline-5-carboxylate reductase dimerisation RPIT_01685 PF03807 NADP oxidoreductase coenzyme F420-dependent RPIT_01700 PF10414 Sirohaem synthase dimerisation region RPIT_01700 PF14824 Sirohaem biosynthesis protein central RPIT_01700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RPIT_01705 PF00300 Histidine phosphatase superfamily (branch 1) RPIT_01710 PF08534 Redoxin RPIT_01715 PF02683 Cytochrome C biogenesis protein transmembrane region RPIT_01720 PF05140 ResB-like family RPIT_01725 PF01578 Cytochrome C assembly protein RPIT_01740 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_01740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RPIT_01745 PF00933 Glycosyl hydrolase family 3 N terminal domain RPIT_01755 PF00005 ABC transporter RPIT_01760 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_01765 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_01770 PF12849 PBP superfamily domain RPIT_01780 PF13090 Polyphosphate kinase C-terminal domain 2 RPIT_01780 PF13089 Polyphosphate kinase N-terminal domain RPIT_01780 PF02503 Polyphosphate kinase middle domain RPIT_01780 PF17941 Polyphosphate kinase C-terminal domain 1 RPIT_01785 PF13673 Acetyltransferase (GNAT) domain RPIT_01785 PF00583 Acetyltransferase (GNAT) family RPIT_01790 PF00486 Transcriptional regulatory protein, C terminal RPIT_01800 PF02580 D-Tyr-tRNA(Tyr) deacylase RPIT_01805 PF08768 Domain of unknown function (DUF1794) RPIT_01810 PF01571 Aminomethyltransferase folate-binding domain RPIT_01815 PF08534 Redoxin RPIT_01820 PF03976 Polyphosphate kinase 2 (PPK2) RPIT_01860 PF00391 PEP-utilising enzyme, mobile domain RPIT_01860 PF05524 PEP-utilising enzyme, N-terminal RPIT_01860 PF03610 PTS system fructose IIA component RPIT_01860 PF00381 PTS HPr component phosphorylation site RPIT_01865 PF02734 DAK2 domain RPIT_01870 PF02733 Dak1 domain RPIT_01875 PF00709 Adenylosuccinate synthetase RPIT_01890 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_01895 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_01905 PF02844 Phosphoribosylglycinamide synthetase, N domain RPIT_01905 PF02843 Phosphoribosylglycinamide synthetase, C domain RPIT_01905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RPIT_01910 PF01548 Transposase RPIT_01910 PF02371 Transposase IS116/IS110/IS902 family RPIT_01925 PF00108 Thiolase, N-terminal domain RPIT_01925 PF02803 Thiolase, C-terminal domain RPIT_01945 PF00206 Lyase RPIT_01945 PF10397 Adenylosuccinate lyase C-terminus RPIT_01950 PF13193 AMP-binding enzyme C-terminal domain RPIT_01950 PF00501 AMP-binding enzyme RPIT_01975 PF01259 SAICAR synthetase RPIT_01985 PF02245 Methylpurine-DNA glycosylase (MPG) RPIT_01990 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RPIT_02005 PF11838 ERAP1-like C-terminal domain RPIT_02005 PF01433 Peptidase family M1 domain RPIT_02010 PF00082 Subtilase family RPIT_02010 PF13860 FlgD Ig-like domain RPIT_02010 PF05922 Peptidase inhibitor I9 RPIT_02010 PF02225 PA domain RPIT_02015 PF00586 AIR synthase related protein, N-terminal domain RPIT_02015 PF02769 AIR synthase related protein, C-terminal domain RPIT_02015 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RPIT_02020 PF02371 Transposase IS116/IS110/IS902 family RPIT_02020 PF01548 Transposase RPIT_02035 PF07687 Peptidase dimerisation domain RPIT_02035 PF01546 Peptidase family M20/M25/M40 RPIT_02050 PF10415 Fumarase C C-terminus RPIT_02050 PF00206 Lyase RPIT_02055 PF03060 Nitronate monooxygenase RPIT_02060 PF00381 PTS HPr component phosphorylation site RPIT_02065 PF02896 PEP-utilising enzyme, TIM barrel domain RPIT_02065 PF05524 PEP-utilising enzyme, N-terminal RPIT_02065 PF00391 PEP-utilising enzyme, mobile domain RPIT_02070 PF00128 Alpha amylase, catalytic domain RPIT_02075 PF00356 Bacterial regulatory proteins, lacI family RPIT_02090 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_02090 PF14785 Maltose transport system permease protein MalF P2 domain RPIT_02095 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_02100 PF00877 NlpC/P60 family RPIT_02110 PF03109 ABC1 family RPIT_02115 PF06463 Molybdenum Cofactor Synthesis C RPIT_02115 PF04055 Radical SAM superfamily RPIT_02130 PF00384 Molybdopterin oxidoreductase RPIT_02130 PF01568 Molydopterin dinucleotide binding domain RPIT_02135 PF14711 Respiratory nitrate reductase beta C-terminal RPIT_02135 PF13247 4Fe-4S dicluster domain RPIT_02140 PF02665 Nitrate reductase gamma subunit RPIT_02140 PF02613 Nitrate reductase delta subunit RPIT_02140 PF00384 Molybdopterin oxidoreductase RPIT_02145 PF02665 Nitrate reductase gamma subunit RPIT_02145 PF02613 Nitrate reductase delta subunit RPIT_02145 PF00384 Molybdopterin oxidoreductase RPIT_02150 PF07690 Major Facilitator Superfamily RPIT_02155 PF07690 Major Facilitator Superfamily RPIT_02160 PF02391 MoaE protein RPIT_02165 PF00581 Rhodanese-like domain RPIT_02165 PF00899 ThiF family RPIT_02170 PF03454 MoeA C-terminal region (domain IV) RPIT_02170 PF00994 Probable molybdopterin binding domain RPIT_02170 PF03453 MoeA N-terminal region (domain I and II) RPIT_02260 PF13276 HTH-like domain RPIT_02260 PF00665 Integrase core domain RPIT_02260 PF13333 Integrase core domain RPIT_02290 PF02796 Helix-turn-helix domain of resolvase RPIT_02290 PF00239 Resolvase, N terminal domain RPIT_02295 PF01695 IstB-like ATP binding protein RPIT_02305 PF00005 ABC transporter RPIT_02305 PF13732 Domain of unknown function (DUF4162) RPIT_02330 PF13276 HTH-like domain RPIT_02330 PF00665 Integrase core domain RPIT_02330 PF13333 Integrase core domain RPIT_02340 PF01967 MoaC family RPIT_02345 PF00994 Probable molybdopterin binding domain RPIT_02355 PF02687 FtsX-like permease family RPIT_02355 PF00005 ABC transporter RPIT_02355 PF12704 MacB-like periplasmic core domain RPIT_02380 PF00156 Phosphoribosyl transferase domain RPIT_02385 PF02769 AIR synthase related protein, C-terminal domain RPIT_02385 PF00586 AIR synthase related protein, N-terminal domain RPIT_02400 PF01047 MarR family RPIT_02405 PF05977 Transmembrane secretion effector RPIT_02410 PF03971 Monomeric isocitrate dehydrogenase RPIT_02425 PF03264 NapC/NirT cytochrome c family, N-terminal region RPIT_02430 PF02335 Cytochrome c552 RPIT_02445 PF01578 Cytochrome C assembly protein RPIT_02475 PF03553 Na+/H+ antiporter family RPIT_02475 PF13726 Na+-H+ antiporter family RPIT_02485 PF00118 TCP-1/cpn60 chaperonin family RPIT_02530 PF00128 Alpha amylase, catalytic domain RPIT_02540 PF02091 Glycyl-tRNA synthetase alpha subunit RPIT_02540 PF02092 Glycyl-tRNA synthetase beta subunit RPIT_02540 PF05746 DALR anticodon binding domain RPIT_02545 PF01545 Cation efflux family RPIT_02545 PF16916 Dimerisation domain of Zinc Transporter RPIT_02550 PF00288 GHMP kinases N terminal domain RPIT_02550 PF10509 Galactokinase galactose-binding signature RPIT_02550 PF08544 GHMP kinases C terminal RPIT_02555 PF12804 MobA-like NTP transferase domain RPIT_02555 PF00132 Bacterial transferase hexapeptide (six repeats) RPIT_02560 PF02734 DAK2 domain RPIT_02575 PF01040 UbiA prenyltransferase family RPIT_02580 PF18374 Enolase N-terminal domain-like RPIT_02580 PF13378 Enolase C-terminal domain-like RPIT_02585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RPIT_02595 PF01209 ubiE/COQ5 methyltransferase family RPIT_02610 PF09383 NIL domain RPIT_02610 PF00005 ABC transporter RPIT_02620 PF00425 chorismate binding enzyme RPIT_02625 PF01494 FAD binding domain RPIT_02630 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RPIT_02635 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RPIT_02640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RPIT_02645 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RPIT_02655 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RPIT_02655 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RPIT_02655 PF10531 SLBB domain RPIT_02660 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RPIT_02660 PF01568 Molydopterin dinucleotide binding domain RPIT_02660 PF00384 Molybdopterin oxidoreductase RPIT_02665 PF00146 NADH dehydrogenase RPIT_02670 PF12838 4Fe-4S dicluster domain RPIT_02675 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RPIT_02680 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RPIT_02685 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RPIT_02685 PF00361 Proton-conducting membrane transporter RPIT_02690 PF00361 Proton-conducting membrane transporter RPIT_02695 PF00361 Proton-conducting membrane transporter RPIT_02700 PF00348 Polyprenyl synthetase RPIT_02705 PF05649 Peptidase family M13 RPIT_02705 PF01431 Peptidase family M13 RPIT_02710 PF03631 Virulence factor BrkB RPIT_02715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RPIT_02720 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RPIT_02720 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RPIT_02720 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RPIT_02730 PF12419 SNF2 Helicase protein RPIT_02730 PF00176 SNF2 family N-terminal domain RPIT_02730 PF00271 Helicase conserved C-terminal domain RPIT_02740 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RPIT_02745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RPIT_02750 PF00037 4Fe-4S binding domain RPIT_02765 PF00561 alpha/beta hydrolase fold RPIT_02770 PF04461 Protein of unknown function (DUF520) RPIT_02785 PF01048 Phosphorylase superfamily RPIT_02800 PF00471 Ribosomal protein L33 RPIT_02805 PF13452 N-terminal half of MaoC dehydratase RPIT_02815 PF01565 FAD binding domain RPIT_02815 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RPIT_02825 PF01546 Peptidase family M20/M25/M40 RPIT_02825 PF07687 Peptidase dimerisation domain RPIT_02835 PF00664 ABC transporter transmembrane region RPIT_02835 PF00005 ABC transporter RPIT_02840 PF00005 ABC transporter RPIT_02840 PF00664 ABC transporter transmembrane region RPIT_02855 PF02357 Transcription termination factor nusG RPIT_02860 PF03946 Ribosomal protein L11, N-terminal domain RPIT_02860 PF00298 Ribosomal protein L11, RNA binding domain RPIT_02865 PF00687 Ribosomal protein L1p/L10e family RPIT_02870 PF01470 Pyroglutamyl peptidase RPIT_02875 PF00378 Enoyl-CoA hydratase/isomerase RPIT_02880 PF13456 Reverse transcriptase-like RPIT_02880 PF00300 Histidine phosphatase superfamily (branch 1) RPIT_02885 PF01256 Carbohydrate kinase RPIT_02890 PF00005 ABC transporter RPIT_02895 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_02905 PF00466 Ribosomal protein L10 RPIT_02910 PF00542 Ribosomal protein L7/L12 C-terminal domain RPIT_02910 PF16320 Ribosomal protein L7/L12 dimerisation domain RPIT_02915 PF04560 RNA polymerase Rpb2, domain 7 RPIT_02915 PF00562 RNA polymerase Rpb2, domain 6 RPIT_02915 PF10385 RNA polymerase beta subunit external 1 domain RPIT_02915 PF04565 RNA polymerase Rpb2, domain 3 RPIT_02915 PF04561 RNA polymerase Rpb2, domain 2 RPIT_02915 PF04563 RNA polymerase beta subunit RPIT_02920 PF00623 RNA polymerase Rpb1, domain 2 RPIT_02920 PF04997 RNA polymerase Rpb1, domain 1 RPIT_02920 PF05000 RNA polymerase Rpb1, domain 4 RPIT_02920 PF04998 RNA polymerase Rpb1, domain 5 RPIT_02920 PF04983 RNA polymerase Rpb1, domain 3 RPIT_02925 PF02653 Branched-chain amino acid transport system / permease component RPIT_02930 PF00005 ABC transporter RPIT_02935 PF13407 Periplasmic binding protein domain RPIT_02940 PF00480 ROK family RPIT_02945 PF00933 Glycosyl hydrolase family 3 N terminal domain RPIT_02950 PF00164 Ribosomal protein S12/S23 RPIT_02955 PF00177 Ribosomal protein S7p/S5e RPIT_02960 PF14492 Elongation Factor G, domain II RPIT_02960 PF03144 Elongation factor Tu domain 2 RPIT_02960 PF00009 Elongation factor Tu GTP binding domain RPIT_02960 PF00679 Elongation factor G C-terminus RPIT_02960 PF03764 Elongation factor G, domain IV RPIT_02965 PF01228 Glycine radical RPIT_02965 PF02901 Pyruvate formate lyase-like RPIT_02970 PF04055 Radical SAM superfamily RPIT_02985 PF00009 Elongation factor Tu GTP binding domain RPIT_02985 PF03143 Elongation factor Tu C-terminal domain RPIT_02985 PF03144 Elongation factor Tu domain 2 RPIT_02990 PF00749 tRNA synthetases class I (E and Q), catalytic domain RPIT_02990 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RPIT_03000 PF00749 tRNA synthetases class I (E and Q), catalytic domain RPIT_03005 PF13409 Glutathione S-transferase, N-terminal domain RPIT_03015 PF04851 Type III restriction enzyme, res subunit RPIT_03025 PF00571 CBS domain RPIT_03025 PF00478 IMP dehydrogenase / GMP reductase domain RPIT_03030 PF16353 Domain of unknown function(DUF4981) RPIT_03030 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RPIT_03030 PF02929 Beta galactosidase small chain RPIT_03030 PF02837 Glycosyl hydrolases family 2, sugar binding domain RPIT_03035 PF00338 Ribosomal protein S10p/S20e RPIT_03040 PF00297 Ribosomal protein L3 RPIT_03045 PF00573 Ribosomal protein L4/L1 family RPIT_03050 PF00276 Ribosomal protein L23 RPIT_03055 PF03947 Ribosomal Proteins L2, C-terminal domain RPIT_03055 PF00181 Ribosomal Proteins L2, RNA binding domain RPIT_03060 PF00203 Ribosomal protein S19 RPIT_03065 PF00237 Ribosomal protein L22p/L17e RPIT_03070 PF00189 Ribosomal protein S3, C-terminal domain RPIT_03070 PF07650 KH domain RPIT_03075 PF00252 Ribosomal protein L16p/L10e RPIT_03080 PF00831 Ribosomal L29 protein RPIT_03085 PF00366 Ribosomal protein S17 RPIT_03100 PF01925 Sulfite exporter TauE/SafE RPIT_03110 PF00899 ThiF family RPIT_03110 PF00581 Rhodanese-like domain RPIT_03115 PF00291 Pyridoxal-phosphate dependent enzyme RPIT_03120 PF13454 FAD-NAD(P)-binding RPIT_03125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RPIT_03125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RPIT_03130 PF01370 NAD dependent epimerase/dehydratase family RPIT_03135 PF00270 DEAD/DEAH box helicase RPIT_03135 PF00271 Helicase conserved C-terminal domain RPIT_03135 PF12300 ATP-dependent RNA helicase RhlB RPIT_03140 PF00238 Ribosomal protein L14p/L23e RPIT_03145 PF00467 KOW motif RPIT_03145 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RPIT_03150 PF00281 Ribosomal protein L5 RPIT_03150 PF00673 ribosomal L5P family C-terminus RPIT_03155 PF00253 Ribosomal protein S14p/S29e RPIT_03160 PF00410 Ribosomal protein S8 RPIT_03165 PF00347 Ribosomal protein L6 RPIT_03170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RPIT_03175 PF03719 Ribosomal protein S5, C-terminal domain RPIT_03175 PF00333 Ribosomal protein S5, N-terminal domain RPIT_03180 PF00327 Ribosomal protein L30p/L7e RPIT_03185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RPIT_03190 PF00344 SecY translocase RPIT_03200 PF00557 Metallopeptidase family M24 RPIT_03225 PF00923 Transaldolase/Fructose-6-phosphate aldolase RPIT_03230 PF04962 KduI/IolB family RPIT_03235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RPIT_03235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RPIT_03235 PF00205 Thiamine pyrophosphate enzyme, central domain RPIT_03245 PF00294 pfkB family carbohydrate kinase RPIT_03250 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_03255 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_03270 PF11975 Family 4 glycosyl hydrolase C-terminal domain RPIT_03270 PF02056 Family 4 glycosyl hydrolase RPIT_03280 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_03280 PF13823 Alcohol dehydrogenase GroES-associated RPIT_03280 PF00107 Zinc-binding dehydrogenase RPIT_03285 PF00171 Aldehyde dehydrogenase family RPIT_03290 PF02653 Branched-chain amino acid transport system / permease component RPIT_03295 PF00005 ABC transporter RPIT_03300 PF13407 Periplasmic binding protein domain RPIT_03305 PF01261 Xylose isomerase-like TIM barrel RPIT_03310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RPIT_03310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_03315 PF01261 Xylose isomerase-like TIM barrel RPIT_03320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RPIT_03320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_03330 PF00107 Zinc-binding dehydrogenase RPIT_03330 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_03335 PF00873 AcrB/AcrD/AcrF family RPIT_03340 PF00873 AcrB/AcrD/AcrF family RPIT_03345 PF01176 Translation initiation factor 1A / IF-1 RPIT_03350 PF00444 Ribosomal protein L36 RPIT_03355 PF00416 Ribosomal protein S13/S18 RPIT_03360 PF00411 Ribosomal protein S11 RPIT_03370 PF01000 RNA polymerase Rpb3/RpoA insert domain RPIT_03370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RPIT_03370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RPIT_03375 PF01196 Ribosomal protein L17 RPIT_03390 PF02653 Branched-chain amino acid transport system / permease component RPIT_03395 PF00005 ABC transporter RPIT_03395 PF08402 TOBE domain RPIT_03400 PF00534 Glycosyl transferases group 1 RPIT_03400 PF13579 Glycosyl transferase 4-like domain RPIT_03410 PF01757 Acyltransferase family RPIT_03415 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RPIT_03415 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RPIT_03420 PF08468 Methyltransferase small domain N-terminal RPIT_03420 PF05175 Methyltransferase small domain RPIT_03425 PF01416 tRNA pseudouridine synthase RPIT_03430 PF02390 Putative methyltransferase RPIT_03435 PF03733 Inner membrane component domain RPIT_03440 PF14492 Elongation Factor G, domain II RPIT_03440 PF00679 Elongation factor G C-terminus RPIT_03440 PF03144 Elongation factor Tu domain 2 RPIT_03440 PF00009 Elongation factor Tu GTP binding domain RPIT_03440 PF03764 Elongation factor G, domain IV RPIT_03445 PF00572 Ribosomal protein L13 RPIT_03450 PF00380 Ribosomal protein S9/S16 RPIT_03455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RPIT_03455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RPIT_03455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RPIT_03455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RPIT_03465 PF00773 RNB domain RPIT_03465 PF00575 S1 RNA binding domain RPIT_03475 PF04168 A predicted alpha-helical domain with a conserved ER motif. RPIT_03475 PF14403 Circularly permuted ATP-grasp type 2 RPIT_03480 PF01841 Transglutaminase-like superfamily RPIT_03480 PF08379 Bacterial transglutaminase-like N-terminal region RPIT_03485 PF01841 Transglutaminase-like superfamily RPIT_03485 PF08379 Bacterial transglutaminase-like N-terminal region RPIT_03490 PF00557 Metallopeptidase family M24 RPIT_03500 PF03951 Glutamine synthetase, beta-Grasp domain RPIT_03500 PF00120 Glutamine synthetase, catalytic domain RPIT_03510 PF08335 GlnD PII-uridylyltransferase RPIT_03510 PF03710 Glutamate-ammonia ligase adenylyltransferase RPIT_03515 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_03520 PF09084 NMT1/THI5 like RPIT_03535 PF03176 MMPL family RPIT_03540 PF00120 Glutamine synthetase, catalytic domain RPIT_03540 PF03951 Glutamine synthetase, beta-Grasp domain RPIT_03545 PF00375 Sodium:dicarboxylate symporter family RPIT_03555 PF00005 ABC transporter RPIT_03555 PF16326 ABC transporter C-terminal domain RPIT_03555 PF12848 ABC transporter RPIT_03570 PF03099 Biotin/lipoate A/B protein ligase family RPIT_03580 PF00364 Biotin-requiring enzyme RPIT_03580 PF02817 e3 binding domain RPIT_03580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RPIT_03585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RPIT_03585 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_03595 PF02789 Cytosol aminopeptidase family, N-terminal domain RPIT_03595 PF00883 Cytosol aminopeptidase family, catalytic domain RPIT_03625 PF02595 Glycerate kinase family RPIT_03630 PF01521 Iron-sulphur cluster biosynthesis RPIT_03635 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RPIT_03640 PF00115 Cytochrome C and Quinol oxidase polypeptide I RPIT_03655 PF01695 IstB-like ATP binding protein RPIT_03685 PF07238 PilZ domain RPIT_03685 PF00535 Glycosyl transferase family 2 RPIT_03685 PF03552 Cellulose synthase RPIT_03690 PF00005 ABC transporter RPIT_03690 PF13732 Domain of unknown function (DUF4162) RPIT_03695 PF02678 Pirin RPIT_03695 PF05726 Pirin C-terminal cupin domain RPIT_03700 PF00571 CBS domain RPIT_03700 PF00478 IMP dehydrogenase / GMP reductase domain RPIT_03705 PF13631 Cytochrome b(N-terminal)/b6/petB RPIT_03710 PF00355 Rieske [2Fe-2S] domain RPIT_03715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RPIT_03715 PF00034 Cytochrome c RPIT_03720 PF00510 Cytochrome c oxidase subunit III RPIT_03735 PF02885 Glycosyl transferase family, helical bundle domain RPIT_03735 PF00591 Glycosyl transferase family, a/b domain RPIT_03745 PF06224 Winged helix DNA-binding domain RPIT_03750 PF00573 Ribosomal protein L4/L1 family RPIT_03760 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RPIT_03765 PF00929 Exonuclease RPIT_03765 PF01541 GIY-YIG catalytic domain RPIT_03770 PF00877 NlpC/P60 family RPIT_03790 PF00196 Bacterial regulatory proteins, luxR family RPIT_03790 PF00072 Response regulator receiver domain RPIT_03795 PF01474 Class-II DAHP synthetase family RPIT_03810 PF03793 PASTA domain RPIT_03810 PF00069 Protein kinase domain RPIT_03815 PF02581 Thiamine monophosphate synthase RPIT_03830 PF02219 Methylenetetrahydrofolate reductase RPIT_03840 PF13538 UvrD-like helicase C-terminal domain RPIT_03845 PF06965 Na+/H+ antiporter 1 RPIT_03845 PF13462 Thioredoxin RPIT_03870 PF00005 ABC transporter RPIT_03875 PF00005 ABC transporter RPIT_03875 PF02687 FtsX-like permease family RPIT_03875 PF12704 MacB-like periplasmic core domain RPIT_03890 PF01548 Transposase RPIT_03890 PF02371 Transposase IS116/IS110/IS902 family RPIT_03895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RPIT_03895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RPIT_03895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RPIT_03910 PF00005 ABC transporter RPIT_03910 PF00664 ABC transporter transmembrane region RPIT_03920 PF13439 Glycosyltransferase Family 4 RPIT_03920 PF00534 Glycosyl transferases group 1 RPIT_03950 PF14579 Helix-hairpin-helix motif RPIT_03950 PF02811 PHP domain RPIT_03950 PF07733 Bacterial DNA polymerase III alpha NTPase domain RPIT_03950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RPIT_03955 PF00817 impB/mucB/samB family RPIT_03955 PF11799 impB/mucB/samB family C-terminal domain RPIT_03980 PF17863 AAA lid domain RPIT_03980 PF07726 ATPase family associated with various cellular activities (AAA) RPIT_03985 PF02381 MraZ protein, putative antitoxin-like RPIT_03990 PF01795 MraW methylase family RPIT_04000 PF00905 Penicillin binding protein transpeptidase domain RPIT_04000 PF03717 Penicillin-binding Protein dimerisation domain RPIT_04005 PF08245 Mur ligase middle domain RPIT_04005 PF02875 Mur ligase family, glutamate ligase domain RPIT_04005 PF01225 Mur ligase family, catalytic domain RPIT_04010 PF02875 Mur ligase family, glutamate ligase domain RPIT_04010 PF01225 Mur ligase family, catalytic domain RPIT_04010 PF08245 Mur ligase middle domain RPIT_04015 PF00953 Glycosyl transferase family 4 RPIT_04015 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RPIT_04020 PF02875 Mur ligase family, glutamate ligase domain RPIT_04020 PF08245 Mur ligase middle domain RPIT_04025 PF01098 Cell cycle protein RPIT_04030 PF03033 Glycosyltransferase family 28 N-terminal domain RPIT_04030 PF04101 Glycosyltransferase family 28 C-terminal domain RPIT_04035 PF08245 Mur ligase middle domain RPIT_04035 PF02875 Mur ligase family, glutamate ligase domain RPIT_04035 PF01225 Mur ligase family, catalytic domain RPIT_04040 PF03799 Cell division protein FtsQ RPIT_04040 PF08478 POTRA domain, FtsQ-type RPIT_04045 PF00091 Tubulin/FtsZ family, GTPase domain RPIT_04045 PF12327 FtsZ family, C-terminal domain RPIT_04050 PF04472 Cell division protein SepF RPIT_04070 PF01252 Signal peptidase (SPase) II RPIT_04075 PF00849 RNA pseudouridylate synthase RPIT_04080 PF00224 Pyruvate kinase, barrel domain RPIT_04080 PF02887 Pyruvate kinase, alpha/beta domain RPIT_04090 PF00072 Response regulator receiver domain RPIT_04090 PF03861 ANTAR domain RPIT_04095 PF03061 Thioesterase superfamily RPIT_04100 PF00476 DNA polymerase family A RPIT_04100 PF01367 5'-3' exonuclease, C-terminal SAM fold RPIT_04100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RPIT_04120 PF00575 S1 RNA binding domain RPIT_04125 PF01121 Dephospho-CoA kinase RPIT_04130 PF02347 Glycine cleavage system P-protein RPIT_04135 PF01597 Glycine cleavage H-protein RPIT_04140 PF01571 Aminomethyltransferase folate-binding domain RPIT_04140 PF08669 Glycine cleavage T-protein C-terminal barrel domain RPIT_04155 PF12344 Ultra-violet resistance protein B RPIT_04155 PF00271 Helicase conserved C-terminal domain RPIT_04155 PF17757 UvrB interaction domain RPIT_04155 PF04851 Type III restriction enzyme, res subunit RPIT_04155 PF02151 UvrB/uvrC motif RPIT_04165 PF17760 UvrA interaction domain RPIT_04165 PF17755 UvrA DNA-binding domain RPIT_04165 PF00005 ABC transporter RPIT_04175 PF08459 UvrC Helix-hairpin-helix N-terminal RPIT_04175 PF02151 UvrB/uvrC motif RPIT_04175 PF01541 GIY-YIG catalytic domain RPIT_04180 PF02632 BioY family RPIT_04185 PF00005 ABC transporter RPIT_04190 PF02361 Cobalt transport protein RPIT_04195 PF03668 P-loop ATPase protein family RPIT_04200 PF01933 Uncharacterised protein family UPF0052 RPIT_04205 PF02650 WhiA C-terminal HTH domain RPIT_04205 PF14527 WhiA LAGLIDADG-like domain RPIT_04205 PF10298 WhiA N-terminal LAGLIDADG-like domain RPIT_04210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RPIT_04210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RPIT_04215 PF00162 Phosphoglycerate kinase RPIT_04220 PF00121 Triosephosphate isomerase RPIT_04230 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_04235 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_04245 PF00005 ABC transporter RPIT_04250 PF03840 Preprotein translocase SecG subunit RPIT_04260 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RPIT_04270 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RPIT_04270 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RPIT_04300 PF01040 UbiA prenyltransferase family RPIT_04310 PF04978 Protein of unknown function (DUF664) RPIT_04315 PF01432 Peptidase family M3 RPIT_04320 PF02628 Cytochrome oxidase assembly protein RPIT_04330 PF13732 Domain of unknown function (DUF4162) RPIT_04330 PF00005 ABC transporter RPIT_04340 PF01458 Uncharacterized protein family (UPF0051) RPIT_04345 PF01458 Uncharacterized protein family (UPF0051) RPIT_04355 PF00005 ABC transporter RPIT_04360 PF00266 Aminotransferase class-V RPIT_04365 PF01592 NifU-like N terminal domain RPIT_04370 PF01883 Iron-sulfur cluster assembly protein RPIT_04375 PF00561 alpha/beta hydrolase fold RPIT_04385 PF00196 Bacterial regulatory proteins, luxR family RPIT_04385 PF00072 Response regulator receiver domain RPIT_04390 PF00892 EamA-like transporter family RPIT_04395 PF16326 ABC transporter C-terminal domain RPIT_04395 PF12848 ABC transporter RPIT_04395 PF00005 ABC transporter RPIT_04410 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RPIT_04415 PF13649 Methyltransferase domain RPIT_04440 PF00005 ABC transporter RPIT_04450 PF01145 SPFH domain / Band 7 family RPIT_04455 PF13593 SBF-like CPA transporter family (DUF4137) RPIT_04465 PF00588 SpoU rRNA Methylase family RPIT_04480 PF01327 Polypeptide deformylase RPIT_04485 PF02899 Phage integrase, N-terminal SAM-like domain RPIT_04485 PF00589 Phage integrase family RPIT_04490 PF10145 Phage-related minor tail protein RPIT_04490 PF01464 Transglycosylase SLT domain RPIT_04490 PF01551 Peptidase family M23 RPIT_04495 PF00318 Ribosomal protein S2 RPIT_04500 PF00889 Elongation factor TS RPIT_04505 PF00696 Amino acid kinase family RPIT_04510 PF01765 Ribosome recycling factor RPIT_04520 PF04055 Radical SAM superfamily RPIT_04525 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RPIT_04525 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RPIT_04530 PF01636 Phosphotransferase enzyme family RPIT_04535 PF13288 DXP reductoisomerase C-terminal domain RPIT_04535 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RPIT_04535 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RPIT_04540 PF17820 PDZ domain RPIT_04540 PF02163 Peptidase family M50 RPIT_04545 PF04551 GcpE protein RPIT_04550 PF00583 Acetyltransferase (GNAT) family RPIT_04555 PF03129 Anticodon binding domain RPIT_04555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RPIT_04555 PF04073 Aminoacyl-tRNA editing domain RPIT_04570 PF17384 RimP C-terminal SH3 domain RPIT_04570 PF02576 RimP N-terminal domain RPIT_04575 PF08529 NusA N-terminal domain RPIT_04575 PF13184 NusA-like KH domain RPIT_04580 PF06737 Transglycosylase-like domain RPIT_04580 PF07501 G5 domain RPIT_04580 PF03990 G5-linked-Ubiquitin-like domain RPIT_04600 PF11987 Translation-initiation factor 2 RPIT_04600 PF00009 Elongation factor Tu GTP binding domain RPIT_04600 PF04760 Translation initiation factor IF-2, N-terminal region RPIT_04605 PF02033 Ribosome-binding factor A RPIT_04610 PF16198 tRNA pseudouridylate synthase B C-terminal domain RPIT_04610 PF01509 TruB family pseudouridylate synthase (N terminal domain) RPIT_04610 PF09142 tRNA Pseudouridine synthase II, C terminal RPIT_04615 PF01687 Riboflavin kinase RPIT_04615 PF06574 FAD synthetase RPIT_04630 PF00312 Ribosomal protein S15 RPIT_04635 PF14850 DNA-binding domain of Proline dehydrogenase RPIT_04635 PF00171 Aldehyde dehydrogenase family RPIT_04635 PF01619 Proline dehydrogenase RPIT_04635 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RPIT_04640 PF00013 KH domain RPIT_04640 PF01138 3' exoribonuclease family, domain 1 RPIT_04640 PF00575 S1 RNA binding domain RPIT_04640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RPIT_04645 PF05173 Dihydrodipicolinate reductase, C-terminus RPIT_04645 PF01113 Dihydrodipicolinate reductase, N-terminus RPIT_04650 PF02028 BCCT, betaine/carnitine/choline family transporter RPIT_04660 PF12706 Beta-lactamase superfamily domain RPIT_04660 PF17770 Ribonuclease J C-terminal domain RPIT_04660 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RPIT_04665 PF00829 Ribosomal prokaryotic L21 protein RPIT_04670 PF01016 Ribosomal L27 protein RPIT_04675 PF01018 GTP1/OBG RPIT_04675 PF09269 Domain of unknown function (DUF1967) RPIT_04675 PF01926 50S ribosome-binding GTPase RPIT_04680 PF01472 PUA domain RPIT_04680 PF00696 Amino acid kinase family RPIT_04690 PF00171 Aldehyde dehydrogenase family RPIT_04695 PF01467 Cytidylyltransferase-like RPIT_04705 PF00300 Histidine phosphatase superfamily (branch 1) RPIT_04715 PF01488 Shikimate / quinate 5-dehydrogenase RPIT_04715 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RPIT_04715 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RPIT_04720 PF01208 Uroporphyrinogen decarboxylase (URO-D) RPIT_04730 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RPIT_04730 PF03900 Porphobilinogen deaminase, C-terminal domain RPIT_04735 PF00490 Delta-aminolevulinic acid dehydratase RPIT_04740 PF00202 Aminotransferase class-III RPIT_04745 PF03900 Porphobilinogen deaminase, C-terminal domain RPIT_04745 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RPIT_04755 PF00875 DNA photolyase RPIT_04755 PF03441 FAD binding domain of DNA photolyase RPIT_04760 PF01593 Flavin containing amine oxidoreductase RPIT_04770 PF12804 MobA-like NTP transferase domain RPIT_04780 PF01384 Phosphate transporter family RPIT_04800 PF01471 Putative peptidoglycan binding domain RPIT_04800 PF07486 Cell Wall Hydrolase RPIT_04820 PF00294 pfkB family carbohydrate kinase RPIT_04825 PF08264 Anticodon-binding domain of tRNA RPIT_04825 PF00133 tRNA synthetases class I (I, L, M and V) RPIT_04825 PF13603 Leucyl-tRNA synthetase, Domain 2 RPIT_04825 PF09334 tRNA synthetases class I (M) RPIT_04845 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RPIT_04845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_04860 PF01649 Ribosomal protein S20 RPIT_04865 PF00679 Elongation factor G C-terminus RPIT_04865 PF00009 Elongation factor Tu GTP binding domain RPIT_04865 PF03144 Elongation factor Tu domain 2 RPIT_04865 PF06421 GTP-binding protein LepA C-terminus RPIT_04870 PF00270 DEAD/DEAH box helicase RPIT_04870 PF04408 Helicase associated domain (HA2) RPIT_04870 PF00271 Helicase conserved C-terminal domain RPIT_04870 PF08482 ATP-dependent helicase C-terminal RPIT_04880 PF04055 Radical SAM superfamily RPIT_04890 PF00392 Bacterial regulatory proteins, gntR family RPIT_04895 PF00005 ABC transporter RPIT_04910 PF00392 Bacterial regulatory proteins, gntR family RPIT_04955 PF00459 Inositol monophosphatase family RPIT_04960 PF16123 Hydroxyacylglutathione hydrolase C-terminus RPIT_04960 PF00753 Metallo-beta-lactamase superfamily RPIT_04965 PF01628 HrcA protein C terminal domain RPIT_04965 PF08220 DeoR-like helix-turn-helix domain RPIT_04970 PF01556 DnaJ C terminal domain RPIT_04970 PF00684 DnaJ central domain RPIT_04970 PF00226 DnaJ domain RPIT_04975 PF04452 RNA methyltransferase RPIT_04980 PF01702 Queuine tRNA-ribosyltransferase RPIT_04995 PF02562 PhoH-like protein RPIT_05000 PF02130 Uncharacterized protein family UPF0054 RPIT_05005 PF13520 Amino acid permease RPIT_05010 PF03471 Transporter associated domain RPIT_05010 PF01595 Cyclin M transmembrane N-terminal domain RPIT_05010 PF00571 CBS domain RPIT_05015 PF01926 50S ribosome-binding GTPase RPIT_05015 PF07650 KH domain RPIT_05025 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_05030 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_05035 PF08502 LeuA allosteric (dimerisation) domain RPIT_05035 PF00682 HMGL-like RPIT_05040 PF08148 DSHCT (NUC185) domain RPIT_05040 PF00270 DEAD/DEAH box helicase RPIT_05040 PF00271 Helicase conserved C-terminal domain RPIT_05050 PF01255 Putative undecaprenyl diphosphate synthase RPIT_05055 PF11967 Recombination protein O N terminal RPIT_05055 PF02565 Recombination protein O C terminal RPIT_05060 PF01475 Ferric uptake regulator family RPIT_05065 PF00950 ABC 3 transport family RPIT_05070 PF00005 ABC transporter RPIT_05075 PF01297 Zinc-uptake complex component A periplasmic RPIT_05085 PF01207 Dihydrouridine synthase (Dus) RPIT_05095 PF00285 Citrate synthase, C-terminal domain RPIT_05100 PF13286 Phosphohydrolase-associated domain RPIT_05100 PF01966 HD domain RPIT_05105 PF01807 CHC2 zinc finger RPIT_05105 PF08275 DNA primase catalytic core, N-terminal domain RPIT_05105 PF13662 Toprim domain RPIT_05105 PF08278 DNA primase DnaG DnaB-binding RPIT_05105 PF10410 DnaB-helicase binding domain of primase RPIT_05115 PF00474 Sodium:solute symporter family RPIT_05160 PF07726 ATPase family associated with various cellular activities (AAA) RPIT_05160 PF17863 AAA lid domain RPIT_05165 PF01882 Protein of unknown function DUF58 RPIT_05170 PF13519 von Willebrand factor type A domain RPIT_05170 PF07584 Aerotolerance regulator N-terminal RPIT_05175 PF13519 von Willebrand factor type A domain RPIT_05175 PF07584 Aerotolerance regulator N-terminal RPIT_05180 PF01168 Alanine racemase, N-terminal domain RPIT_05185 PF00326 Prolyl oligopeptidase family RPIT_05195 PF00109 Beta-ketoacyl synthase, N-terminal domain RPIT_05195 PF02801 Beta-ketoacyl synthase, C-terminal domain RPIT_05200 PF00550 Phosphopantetheine attachment site RPIT_05205 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RPIT_05205 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RPIT_05210 PF00698 Acyl transferase domain RPIT_05215 PF17853 GGDEF-like domain RPIT_05215 PF13556 PucR C-terminal helix-turn-helix domain RPIT_05220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RPIT_05225 PF01235 Sodium:alanine symporter family RPIT_05235 PF02811 PHP domain RPIT_05235 PF14716 Helix-hairpin-helix domain RPIT_05235 PF14791 DNA polymerase beta thumb RPIT_05250 PF00456 Transketolase, thiamine diphosphate binding domain RPIT_05250 PF17831 Pyruvate dehydrogenase E1 component middle domain RPIT_05255 PF11253 Protein of unknown function (DUF3052) RPIT_05260 PF00365 Phosphofructokinase RPIT_05265 PF02371 Transposase IS116/IS110/IS902 family RPIT_05265 PF01548 Transposase RPIT_05285 PF09424 Yqey-like protein RPIT_05290 PF00472 RF-1 domain RPIT_05290 PF03462 PCRF domain RPIT_05295 PF00005 ABC transporter RPIT_05300 PF18075 FtsX extracellular domain RPIT_05300 PF02687 FtsX-like permease family RPIT_05305 PF01551 Peptidase family M23 RPIT_05305 PF01464 Transglycosylase SLT domain RPIT_05305 PF10145 Phage-related minor tail protein RPIT_05310 PF01668 SmpB protein RPIT_05325 PF02622 Uncharacterized ACR, COG1678 RPIT_05330 PF00486 Transcriptional regulatory protein, C terminal RPIT_05330 PF00072 Response regulator receiver domain RPIT_05335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_05335 PF00512 His Kinase A (phospho-acceptor) domain RPIT_05335 PF00672 HAMP domain RPIT_05340 PF10646 Sporulation and spore germination RPIT_05340 PF10647 Lipoprotein LpqB beta-propeller domain RPIT_05345 PF00156 Phosphoribosyl transferase domain RPIT_05350 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RPIT_05350 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RPIT_05355 PF07516 SecA Wing and Scaffold domain RPIT_05355 PF07517 SecA DEAD-like domain RPIT_05355 PF01043 SecA preprotein cross-linking domain RPIT_05385 PF02735 Ku70/Ku80 beta-barrel domain RPIT_05400 PF02811 PHP domain RPIT_05405 PF00579 tRNA synthetases class I (W and Y) RPIT_05410 PF00270 DEAD/DEAH box helicase RPIT_05410 PF00271 Helicase conserved C-terminal domain RPIT_05425 PF13298 DNA polymerase Ligase (LigD) RPIT_05425 PF01068 ATP dependent DNA ligase domain RPIT_05425 PF04679 ATP dependent DNA ligase C terminal region RPIT_05430 PF00580 UvrD/REP helicase N-terminal domain RPIT_05430 PF13361 UvrD-like helicase C-terminal domain RPIT_05435 PF00580 UvrD/REP helicase N-terminal domain RPIT_05435 PF13361 UvrD-like helicase C-terminal domain RPIT_05440 PF00293 NUDIX domain RPIT_05440 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RPIT_05440 PF09297 NADH pyrophosphatase zinc ribbon domain RPIT_05445 PF04542 Sigma-70 region 2 RPIT_05445 PF08281 Sigma-70, region 4 RPIT_05460 PF00986 DNA gyrase B subunit, carboxyl terminus RPIT_05460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_05460 PF00204 DNA gyrase B RPIT_05460 PF01751 Toprim domain RPIT_05465 PF02589 LUD domain RPIT_05470 PF13183 4Fe-4S dicluster domain RPIT_05470 PF02589 LUD domain RPIT_05470 PF11870 Domain of unknown function (DUF3390) RPIT_05475 PF02754 Cysteine-rich domain RPIT_05480 PF02652 L-lactate permease RPIT_05485 PF00392 Bacterial regulatory proteins, gntR family RPIT_05485 PF07729 FCD domain RPIT_05490 PF00484 Carbonic anhydrase RPIT_05495 PF00521 DNA gyrase/topoisomerase IV, subunit A RPIT_05495 PF03989 DNA gyrase C-terminal domain, beta-propeller RPIT_05515 PF00534 Glycosyl transferases group 1 RPIT_05515 PF13439 Glycosyltransferase Family 4 RPIT_05520 PF00265 Thymidine kinase RPIT_05530 PF11268 Protein of unknown function (DUF3071) RPIT_05550 PF00692 dUTPase RPIT_05570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RPIT_05570 PF00367 phosphotransferase system, EIIB RPIT_05570 PF02378 Phosphotransferase system, EIIC RPIT_05575 PF02896 PEP-utilising enzyme, TIM barrel domain RPIT_05575 PF00391 PEP-utilising enzyme, mobile domain RPIT_05575 PF05524 PEP-utilising enzyme, N-terminal RPIT_05575 PF00381 PTS HPr component phosphorylation site RPIT_05575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RPIT_05585 PF13936 Helix-turn-helix domain RPIT_05585 PF00665 Integrase core domain RPIT_05590 PF02080 TrkA-C domain RPIT_05590 PF02254 TrkA-N domain RPIT_05595 PF02254 TrkA-N domain RPIT_05595 PF02080 TrkA-C domain RPIT_05600 PF13520 Amino acid permease RPIT_05605 PF05958 tRNA (Uracil-5-)-methyltransferase RPIT_05605 PF01938 TRAM domain RPIT_05610 PF00694 Aconitase C-terminal domain RPIT_05610 PF00330 Aconitase family (aconitate hydratase) RPIT_05620 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RPIT_05620 PF02779 Transketolase, pyrimidine binding domain RPIT_05620 PF02780 Transketolase, C-terminal domain RPIT_05635 PF01641 SelR domain RPIT_05665 PF03458 UPF0126 domain RPIT_05670 PF00892 EamA-like transporter family RPIT_05675 PF01063 Amino-transferase class IV RPIT_05680 PF04073 Aminoacyl-tRNA editing domain RPIT_05690 PF03129 Anticodon binding domain RPIT_05690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RPIT_05690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RPIT_05695 PF01230 HIT domain RPIT_05700 PF03279 Bacterial lipid A biosynthesis acyltransferase RPIT_05705 PF13439 Glycosyltransferase Family 4 RPIT_05720 PF06947 Protein of unknown function (DUF1290) RPIT_05725 PF05949 Bacterial protein of unknown function (DUF881) RPIT_05730 PF16697 Inner membrane component of T3SS, cytoplasmic domain RPIT_05735 PF00376 MerR family regulatory protein RPIT_05740 PF02577 Bifunctional nuclease RPIT_05745 PF13411 MerR HTH family regulatory protein RPIT_05750 PF03631 Virulence factor BrkB RPIT_05755 PF00365 Phosphofructokinase RPIT_05770 PF00248 Aldo/keto reductase family RPIT_05775 PF01300 Telomere recombination RPIT_05795 PF07969 Amidohydrolase family RPIT_05820 PF04675 DNA ligase N terminus RPIT_05820 PF04679 ATP dependent DNA ligase C terminal region RPIT_05820 PF01068 ATP dependent DNA ligase domain RPIT_05825 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_05830 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_05855 PF07859 alpha/beta hydrolase fold RPIT_05875 PF00196 Bacterial regulatory proteins, luxR family RPIT_05875 PF00072 Response regulator receiver domain RPIT_05880 PF00672 HAMP domain RPIT_05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_05880 PF07730 Histidine kinase RPIT_05885 PF00005 ABC transporter RPIT_05895 PF13443 Cro/C1-type HTH DNA-binding domain RPIT_05905 PF08241 Methyltransferase domain RPIT_05925 PF02661 Fic/DOC family RPIT_05935 PF00561 alpha/beta hydrolase fold RPIT_05945 PF02378 Phosphotransferase system, EIIC RPIT_05945 PF00367 phosphotransferase system, EIIB RPIT_05945 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RPIT_05955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RPIT_05955 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_05960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RPIT_05965 PF08543 Phosphomethylpyrimidine kinase RPIT_05975 PF13397 RNA polymerase-binding protein RPIT_05980 PF04186 FxsA cytoplasmic membrane protein RPIT_05985 PF00535 Glycosyl transferase family 2 RPIT_05990 PF00795 Carbon-nitrogen hydrolase RPIT_05990 PF00535 Glycosyl transferase family 2 RPIT_05995 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RPIT_05995 PF01367 5'-3' exonuclease, C-terminal SAM fold RPIT_06000 PF07021 Methionine biosynthesis protein MetW RPIT_06000 PF00561 alpha/beta hydrolase fold RPIT_06005 PF00561 alpha/beta hydrolase fold RPIT_06020 PF01053 Cys/Met metabolism PLP-dependent enzyme RPIT_06035 PF01268 Formate--tetrahydrofolate ligase RPIT_06060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RPIT_06085 PF02720 Domain of unknown function (DUF222) RPIT_06090 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RPIT_06090 PF01926 50S ribosome-binding GTPase RPIT_06095 PF02224 Cytidylate kinase RPIT_06100 PF02153 Prephenate dehydrogenase RPIT_06115 PF13419 Haloacid dehalogenase-like hydrolase RPIT_06120 PF02965 Vitamin B12 dependent methionine synthase, activation domain RPIT_06120 PF02310 B12 binding domain RPIT_06120 PF02574 Homocysteine S-methyltransferase RPIT_06120 PF02607 B12 binding domain RPIT_06120 PF00809 Pterin binding enzyme RPIT_06130 PF00834 Ribulose-phosphate 3 epimerase family RPIT_06135 PF01029 NusB family RPIT_06135 PF01189 16S rRNA methyltransferase RsmB/F RPIT_06140 PF02911 Formyl transferase, C-terminal domain RPIT_06140 PF00551 Formyl transferase RPIT_06145 PF17764 3′ DNA-binding domain (3′BD) RPIT_06150 PF00438 S-adenosylmethionine synthetase, N-terminal domain RPIT_06150 PF02772 S-adenosylmethionine synthetase, central domain RPIT_06150 PF02773 S-adenosylmethionine synthetase, C-terminal domain RPIT_06155 PF01192 RNA polymerase Rpb6 RPIT_06160 PF00625 Guanylate kinase RPIT_06170 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RPIT_06175 PF01180 Dihydroorotate dehydrogenase RPIT_06180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RPIT_06180 PF02142 MGS-like domain RPIT_06180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RPIT_06185 PF00117 Glutamine amidotransferase class-I RPIT_06185 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RPIT_06190 PF01029 NusB family RPIT_06195 PF01132 Elongation factor P (EF-P) OB domain RPIT_06195 PF08207 Elongation factor P (EF-P) KOW-like domain RPIT_06195 PF09285 Elongation factor P, C-terminal RPIT_06200 PF02028 BCCT, betaine/carnitine/choline family transporter RPIT_06205 PF01761 3-dehydroquinate synthase RPIT_06210 PF01202 Shikimate kinase RPIT_06215 PF01264 Chorismate synthase RPIT_06220 PF08501 Shikimate dehydrogenase substrate binding domain RPIT_06220 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RPIT_06230 PF03652 Holliday junction resolvase RPIT_06235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RPIT_06235 PF01411 tRNA synthetases class II (A) RPIT_06235 PF02272 DHHA1 domain RPIT_06250 PF16193 AAA C-terminal domain RPIT_06250 PF12002 MgsA AAA+ ATPase C terminal RPIT_06250 PF00004 ATPase family associated with various cellular activities (AAA) RPIT_06255 PF07690 Major Facilitator Superfamily RPIT_06260 PF02938 GAD domain RPIT_06260 PF00152 tRNA synthetases class II (D, K and N) RPIT_06260 PF01336 OB-fold nucleic acid binding domain RPIT_06275 PF03129 Anticodon binding domain RPIT_06275 PF13393 Histidyl-tRNA synthetase RPIT_06285 PF03993 Domain of Unknown Function (DUF349) RPIT_06290 PF04607 Region found in RelA / SpoT proteins RPIT_06290 PF13291 ACT domain RPIT_06290 PF02824 TGS domain RPIT_06300 PF00156 Phosphoribosyl transferase domain RPIT_06305 PF02355 Protein export membrane protein RPIT_06305 PF07549 SecD/SecF GG Motif RPIT_06310 PF02355 Protein export membrane protein RPIT_06310 PF07549 SecD/SecF GG Motif RPIT_06315 PF02699 Preprotein translocase subunit RPIT_06320 PF05496 Holliday junction DNA helicase RuvB P-loop domain RPIT_06320 PF05491 RuvB C-terminal winged helix domain RPIT_06320 PF17864 RuvB AAA lid domain RPIT_06325 PF07499 RuvA, C-terminal domain RPIT_06325 PF01330 RuvA N terminal domain RPIT_06330 PF02075 Crossover junction endodeoxyribonuclease RuvC RPIT_06335 PF01709 Transcriptional regulator RPIT_06360 PF00977 Histidine biosynthesis protein RPIT_06365 PF00117 Glutamine amidotransferase class-I RPIT_06370 PF00475 Imidazoleglycerol-phosphate dehydratase RPIT_06375 PF00155 Aminotransferase class I and II RPIT_06380 PF00815 Histidinol dehydrogenase RPIT_06390 PF07733 Bacterial DNA polymerase III alpha NTPase domain RPIT_06390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RPIT_06390 PF14579 Helix-hairpin-helix motif RPIT_06390 PF02811 PHP domain RPIT_06400 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_06405 PF08402 TOBE domain RPIT_06405 PF00005 ABC transporter RPIT_06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_06415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RPIT_06420 PF00310 Glutamine amidotransferases class-II RPIT_06420 PF04898 Glutamate synthase central domain RPIT_06420 PF01645 Conserved region in glutamate synthase RPIT_06420 PF01493 GXGXG motif RPIT_06425 PF02630 SCO1/SenC RPIT_06430 PF00290 Tryptophan synthase alpha chain RPIT_06435 PF00291 Pyridoxal-phosphate dependent enzyme RPIT_06440 PF00218 Indole-3-glycerol phosphate synthase RPIT_06455 PF00425 chorismate binding enzyme RPIT_06455 PF04715 Anthranilate synthase component I, N terminal region RPIT_06460 PF01502 Phosphoribosyl-AMP cyclohydrolase RPIT_06505 PF02637 GatB domain RPIT_06505 PF02934 GatB/GatE catalytic domain RPIT_06510 PF01425 Amidase RPIT_06515 PF02686 Glu-tRNAGln amidotransferase C subunit RPIT_06535 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RPIT_06535 PF00326 Prolyl oligopeptidase family RPIT_06540 PF00266 Aminotransferase class-V RPIT_06545 PF00128 Alpha amylase, catalytic domain RPIT_06545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RPIT_06550 PF11896 Domain of unknown function (DUF3416) RPIT_06555 PF01636 Phosphotransferase enzyme family RPIT_06555 PF18085 Maltokinase N-terminal cap domain RPIT_06560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RPIT_06560 PF02806 Alpha amylase, C-terminal all-beta domain RPIT_06560 PF00128 Alpha amylase, catalytic domain RPIT_06575 PF00571 CBS domain RPIT_06580 PF00128 Alpha amylase, catalytic domain RPIT_06585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RPIT_06585 PF00128 Alpha amylase, catalytic domain RPIT_06595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RPIT_06595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RPIT_06595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RPIT_06595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RPIT_06615 PF01594 AI-2E family transporter RPIT_06620 PF01939 Endonuclease NucS RPIT_06630 PF00561 alpha/beta hydrolase fold RPIT_06635 PF01548 Transposase RPIT_06635 PF02371 Transposase IS116/IS110/IS902 family RPIT_06640 PF01541 GIY-YIG catalytic domain RPIT_06645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RPIT_06650 PF01923 Cobalamin adenosyltransferase RPIT_06660 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RPIT_06665 PF02874 ATP synthase alpha/beta family, beta-barrel domain RPIT_06665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RPIT_06670 PF00231 ATP synthase RPIT_06675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RPIT_06675 PF02874 ATP synthase alpha/beta family, beta-barrel domain RPIT_06675 PF00306 ATP synthase alpha/beta chain, C terminal domain RPIT_06680 PF00213 ATP synthase delta (OSCP) subunit RPIT_06685 PF00430 ATP synthase B/B' CF(0) RPIT_06690 PF00137 ATP synthase subunit C RPIT_06695 PF00119 ATP synthase A chain RPIT_06710 PF00953 Glycosyl transferase family 4 RPIT_06715 PF01300 Telomere recombination RPIT_06720 PF17827 PrmC N-terminal domain RPIT_06720 PF13649 Methyltransferase domain RPIT_06725 PF00472 RF-1 domain RPIT_06725 PF03462 PCRF domain RPIT_06730 PF01197 Ribosomal protein L31 RPIT_06735 PF07498 Rho termination factor, N-terminal domain RPIT_06735 PF07497 Rho termination factor, RNA-binding domain RPIT_06735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RPIT_06740 PF00288 GHMP kinases N terminal domain RPIT_06740 PF08544 GHMP kinases C terminal RPIT_06745 PF01842 ACT domain RPIT_06745 PF00742 Homoserine dehydrogenase RPIT_06745 PF03447 Homoserine dehydrogenase, NAD binding domain RPIT_06750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RPIT_06750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RPIT_06770 PF16870 2-oxoglutarate dehydrogenase C-terminal RPIT_06770 PF00676 Dehydrogenase E1 component RPIT_06770 PF02779 Transketolase, pyrimidine binding domain RPIT_06770 PF16078 2-oxoglutarate dehydrogenase N-terminus RPIT_06770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RPIT_06775 PF10509 Galactokinase galactose-binding signature RPIT_06775 PF00288 GHMP kinases N terminal domain RPIT_06775 PF08544 GHMP kinases C terminal RPIT_06785 PF02467 Transcription factor WhiB RPIT_06800 PF04542 Sigma-70 region 2 RPIT_06800 PF08281 Sigma-70, region 4 RPIT_06805 PF02586 SOS response associated peptidase (SRAP) RPIT_06815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RPIT_06820 PF03193 RsgA GTPase RPIT_06825 PF00459 Inositol monophosphatase family RPIT_06830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RPIT_06830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RPIT_06835 PF00005 ABC transporter RPIT_06835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RPIT_06840 PF00005 ABC transporter RPIT_06840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RPIT_06850 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_06855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RPIT_06860 PF00356 Bacterial regulatory proteins, lacI family RPIT_06865 PF13350 Tyrosine phosphatase family RPIT_06880 PF00248 Aldo/keto reductase family RPIT_06895 PF03699 Uncharacterised protein family (UPF0182) RPIT_06915 PF00580 UvrD/REP helicase N-terminal domain RPIT_06915 PF13361 UvrD-like helicase C-terminal domain RPIT_06915 PF00570 HRDC domain RPIT_06925 PF13361 UvrD-like helicase C-terminal domain RPIT_06925 PF00580 UvrD/REP helicase N-terminal domain RPIT_06925 PF12705 PD-(D/E)XK nuclease superfamily RPIT_06930 PF13538 UvrD-like helicase C-terminal domain RPIT_06935 PF00155 Aminotransferase class I and II RPIT_06940 PF04107 Glutamate-cysteine ligase family 2(GCS2) RPIT_06945 PF00117 Glutamine amidotransferase class-I RPIT_06945 PF02540 NAD synthase RPIT_06945 PF00958 GMP synthase C terminal domain RPIT_06955 PF04545 Sigma-70, region 4 RPIT_06955 PF00140 Sigma-70 factor, region 1.2 RPIT_06955 PF04542 Sigma-70 region 2 RPIT_06955 PF04539 Sigma-70 region 3 RPIT_06960 PF04539 Sigma-70 region 3 RPIT_06960 PF04542 Sigma-70 region 2 RPIT_06960 PF00140 Sigma-70 factor, region 1.2 RPIT_06960 PF04545 Sigma-70, region 4 RPIT_06970 PF11898 Domain of unknown function (DUF3418) RPIT_06970 PF00270 DEAD/DEAH box helicase RPIT_06970 PF04408 Helicase associated domain (HA2) RPIT_06970 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RPIT_06970 PF00271 Helicase conserved C-terminal domain RPIT_07000 PF00920 Dehydratase family RPIT_07005 PF17385 Lacto-N-biose phosphorylase central domain RPIT_07005 PF17386 Lacto-N-biose phosphorylase C-terminal domain RPIT_07005 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain RPIT_07010 PF00581 Rhodanese-like domain RPIT_07015 PF00196 Bacterial regulatory proteins, luxR family RPIT_07015 PF00072 Response regulator receiver domain RPIT_07020 PF08471 Class II vitamin B12-dependent ribonucleotide reductase RPIT_07020 PF02867 Ribonucleotide reductase, barrel domain RPIT_07025 PF03477 ATP cone domain RPIT_07035 PF00717 Peptidase S24-like RPIT_07035 PF01726 LexA DNA binding domain RPIT_07040 PF13307 Helicase C-terminal domain RPIT_07045 PF16360 GTP-binding GTPase Middle Region RPIT_07045 PF13167 GTP-binding GTPase N-terminal RPIT_07045 PF01926 50S ribosome-binding GTPase RPIT_07050 PF01678 Diaminopimelate epimerase RPIT_07070 PF01263 Aldose 1-epimerase RPIT_07075 PF12072 Domain of unknown function (DUF3552) RPIT_07075 PF00013 KH domain RPIT_07075 PF01966 HD domain RPIT_07080 PF02631 RecX family RPIT_07085 PF00154 recA bacterial DNA recombination protein RPIT_07095 PF08220 DeoR-like helix-turn-helix domain RPIT_07095 PF00455 DeoR C terminal sensor domain RPIT_07105 PF00994 Probable molybdopterin binding domain RPIT_07105 PF18146 Damage-inducible protein CinA KH domain RPIT_07105 PF02464 Competence-damaged protein RPIT_07115 PF04055 Radical SAM superfamily RPIT_07115 PF18693 TRAM domain RPIT_07115 PF00919 Uncharacterized protein family UPF0004 RPIT_07120 PF17854 FtsK alpha domain RPIT_07120 PF09397 Ftsk gamma domain RPIT_07120 PF01580 FtsK/SpoIIIE family RPIT_07125 PF00586 AIR synthase related protein, N-terminal domain RPIT_07125 PF02769 AIR synthase related protein, C-terminal domain RPIT_07130 PF01820 D-ala D-ala ligase N-terminus RPIT_07130 PF07478 D-ala D-ala ligase C-terminus RPIT_07145 PF13673 Acetyltransferase (GNAT) domain RPIT_07150 PF01872 RibD C-terminal domain RPIT_07175 PF00106 short chain dehydrogenase RPIT_07180 PF00202 Aminotransferase class-III RPIT_07220 PF02371 Transposase IS116/IS110/IS902 family RPIT_07220 PF01548 Transposase RPIT_07230 PF00174 Oxidoreductase molybdopterin binding domain RPIT_07265 PF00072 Response regulator receiver domain RPIT_07265 PF00486 Transcriptional regulatory protein, C terminal RPIT_07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_07270 PF00512 His Kinase A (phospho-acceptor) domain RPIT_07270 PF00672 HAMP domain RPIT_07290 PF01790 Prolipoprotein diacylglyceryl transferase RPIT_07305 PF00403 Heavy-metal-associated domain RPIT_07310 PF02583 Metal-sensitive transcriptional repressor RPIT_07335 PF03422 Carbohydrate binding module (family 6) RPIT_07335 PF04616 Glycosyl hydrolases family 43 RPIT_07340 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain RPIT_07340 PF04616 Glycosyl hydrolases family 43 RPIT_07345 PF00356 Bacterial regulatory proteins, lacI family RPIT_07385 PF13635 Domain of unknown function (DUF4143) RPIT_07385 PF13173 AAA domain RPIT_07390 PF00106 short chain dehydrogenase RPIT_07435 PF13361 UvrD-like helicase C-terminal domain RPIT_07435 PF00580 UvrD/REP helicase N-terminal domain RPIT_07440 PF00270 DEAD/DEAH box helicase RPIT_07440 PF00271 Helicase conserved C-terminal domain RPIT_07440 PF08494 DEAD/H associated RPIT_07470 PF00128 Alpha amylase, catalytic domain RPIT_07505 PF00082 Subtilase family RPIT_07515 PF02371 Transposase IS116/IS110/IS902 family RPIT_07515 PF01548 Transposase RPIT_07595 PF00176 SNF2 family N-terminal domain RPIT_07595 PF00271 Helicase conserved C-terminal domain RPIT_07645 PF01850 PIN domain RPIT_07665 PF01545 Cation efflux family RPIT_07685 PF00005 ABC transporter RPIT_07705 PF00440 Bacterial regulatory proteins, tetR family RPIT_07705 PF16859 Tetracyclin repressor-like, C-terminal domain RPIT_07730 PF13443 Cro/C1-type HTH DNA-binding domain RPIT_07765 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RPIT_07765 PF00326 Prolyl oligopeptidase family RPIT_07765 PF07676 WD40-like Beta Propeller Repeat RPIT_07770 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_07770 PF00107 Zinc-binding dehydrogenase RPIT_07770 PF13823 Alcohol dehydrogenase GroES-associated RPIT_07775 PF03167 Uracil DNA glycosylase superfamily RPIT_07795 PF00072 Response regulator receiver domain RPIT_07795 PF00196 Bacterial regulatory proteins, luxR family RPIT_07825 PF00553 Cellulose binding domain RPIT_07825 PF01341 Glycosyl hydrolases family 6 RPIT_07840 PF00069 Protein kinase domain RPIT_07870 PF00069 Protein kinase domain RPIT_07885 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RPIT_07900 PF00694 Aconitase C-terminal domain RPIT_07905 PF00330 Aconitase family (aconitate hydratase) RPIT_07910 PF01614 Bacterial transcriptional regulator RPIT_07910 PF09339 IclR helix-turn-helix domain RPIT_07930 PF02517 CPBP intramembrane metalloprotease RPIT_07935 PF01557 Fumarylacetoacetate (FAA) hydrolase family RPIT_07940 PF00682 HMGL-like RPIT_07940 PF08502 LeuA allosteric (dimerisation) domain RPIT_07945 PF00180 Isocitrate/isopropylmalate dehydrogenase RPIT_07950 PF00391 PEP-utilising enzyme, mobile domain RPIT_07950 PF02896 PEP-utilising enzyme, TIM barrel domain RPIT_07950 PF05524 PEP-utilising enzyme, N-terminal RPIT_07955 PF13302 Acetyltransferase (GNAT) domain RPIT_07960 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RPIT_07960 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RPIT_07965 PF10369 Small subunit of acetolactate synthase RPIT_07970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RPIT_07970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RPIT_07970 PF00205 Thiamine pyrophosphate enzyme, central domain RPIT_07980 PF01230 HIT domain RPIT_07985 PF00977 Histidine biosynthesis protein RPIT_07990 PF00271 Helicase conserved C-terminal domain RPIT_07990 PF00270 DEAD/DEAH box helicase RPIT_07990 PF08148 DSHCT (NUC185) domain RPIT_07995 PF00781 Diacylglycerol kinase catalytic domain RPIT_08000 PF00902 Sec-independent protein translocase protein (TatC) RPIT_08005 PF02416 mttA/Hcf106 family RPIT_08010 PF13280 WYL domain RPIT_08015 PF13280 WYL domain RPIT_08020 PF00749 tRNA synthetases class I (E and Q), catalytic domain RPIT_08025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RPIT_08030 PF00849 RNA pseudouridylate synthase RPIT_08030 PF01479 S4 domain RPIT_08035 PF04079 Segregation and condensation complex subunit ScpB RPIT_08040 PF02616 Segregation and condensation protein ScpA RPIT_08050 PF13614 AAA domain RPIT_08070 PF02899 Phage integrase, N-terminal SAM-like domain RPIT_08070 PF00589 Phage integrase family RPIT_08080 PF06418 CTP synthase N-terminus RPIT_08080 PF00117 Glutamine amidotransferase class-I RPIT_08090 PF02463 RecF/RecN/SMC N terminal domain RPIT_08095 PF01513 ATP-NAD kinase RPIT_08100 PF01728 FtsJ-like methyltransferase RPIT_08100 PF01479 S4 domain RPIT_08110 PF13344 Haloacid dehalogenase-like hydrolase RPIT_08150 PF08281 Sigma-70, region 4 RPIT_08150 PF04542 Sigma-70 region 2 RPIT_08185 PF00579 tRNA synthetases class I (W and Y) RPIT_08190 PF01039 Carboxyl transferase domain RPIT_08195 PF14698 Argininosuccinate lyase C-terminal RPIT_08195 PF00206 Lyase RPIT_08200 PF01316 Arginine repressor, DNA binding domain RPIT_08200 PF02863 Arginine repressor, C-terminal domain RPIT_08205 PF00202 Aminotransferase class-III RPIT_08210 PF00696 Amino acid kinase family RPIT_08215 PF01960 ArgJ family RPIT_08220 PF02774 Semialdehyde dehydrogenase, dimerisation domain RPIT_08220 PF01118 Semialdehyde dehydrogenase, NAD binding domain RPIT_08235 PF17676 LD-carboxypeptidase C-terminal domain RPIT_08235 PF02016 LD-carboxypeptidase N-terminal domain RPIT_08240 PF00067 Cytochrome P450 RPIT_08245 PF02909 Tetracyclin repressor-like, C-terminal domain RPIT_08245 PF00440 Bacterial regulatory proteins, tetR family RPIT_08255 PF03147 Ferredoxin-fold anticodon binding domain RPIT_08255 PF01588 Putative tRNA binding domain RPIT_08255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RPIT_08255 PF03483 B3/4 domain RPIT_08255 PF03484 tRNA synthetase B5 domain RPIT_08260 PF01409 tRNA synthetases class II core domain (F) RPIT_08260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RPIT_08265 PF08032 RNA 2'-O ribose methyltransferase substrate binding RPIT_08265 PF00588 SpoU rRNA Methylase family RPIT_08270 PF00453 Ribosomal protein L20 RPIT_08275 PF01632 Ribosomal protein L35 RPIT_08280 PF00707 Translation initiation factor IF-3, C-terminal domain RPIT_08280 PF05198 Translation initiation factor IF-3, N-terminal domain RPIT_08300 PF08029 HisG, C-terminal domain RPIT_08300 PF01634 ATP phosphoribosyltransferase RPIT_08305 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RPIT_08310 PF01406 tRNA synthetases class I (C) catalytic domain RPIT_08330 PF02673 Bacitracin resistance protein BacA RPIT_08335 PF00248 Aldo/keto reductase family RPIT_08390 PF00270 DEAD/DEAH box helicase RPIT_08390 PF17191 RecG wedge domain RPIT_08390 PF13749 Putative ATP-dependent DNA helicase recG C-terminal RPIT_08405 PF00872 Transposase, Mutator family RPIT_08420 PF01230 HIT domain RPIT_08425 PF07731 Multicopper oxidase RPIT_08425 PF07732 Multicopper oxidase RPIT_08425 PF00394 Multicopper oxidase RPIT_08435 PF00072 Response regulator receiver domain RPIT_08435 PF00486 Transcriptional regulatory protein, C terminal RPIT_08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_08440 PF00512 His Kinase A (phospho-acceptor) domain RPIT_08440 PF00672 HAMP domain RPIT_08460 PF00005 ABC transporter RPIT_08460 PF02687 FtsX-like permease family RPIT_08460 PF12704 MacB-like periplasmic core domain RPIT_08490 PF00291 Pyridoxal-phosphate dependent enzyme RPIT_08495 PF13419 Haloacid dehalogenase-like hydrolase RPIT_08515 PF00005 ABC transporter RPIT_08535 PF02481 DNA recombination-mediator protein A RPIT_08535 PF17782 DprA winged helix domain RPIT_08545 PF02021 Uncharacterised protein family UPF0102 RPIT_08550 PF10611 Protein of unknown function (DUF2469) RPIT_08555 PF01351 Ribonuclease HII RPIT_08560 PF10502 Signal peptidase, peptidase S26 RPIT_08565 PF01245 Ribosomal protein L19 RPIT_08570 PF13085 2Fe-2S iron-sulfur cluster binding domain RPIT_08570 PF13183 4Fe-4S dicluster domain RPIT_08575 PF00890 FAD binding domain RPIT_08575 PF02910 Fumarate reductase flavoprotein C-term RPIT_08585 PF01746 tRNA (Guanine-1)-methyltransferase RPIT_08590 PF05239 PRC-barrel domain RPIT_08590 PF01782 RimM N-terminal domain RPIT_08600 PF00886 Ribosomal protein S16 RPIT_08615 PF01979 Amidohydrolase family RPIT_08640 PF00196 Bacterial regulatory proteins, luxR family RPIT_08640 PF00072 Response regulator receiver domain RPIT_08650 PF00005 ABC transporter RPIT_08655 PF00196 Bacterial regulatory proteins, luxR family RPIT_08660 PF00005 ABC transporter RPIT_08660 PF00664 ABC transporter transmembrane region RPIT_08665 PF02881 SRP54-type protein, helical bundle domain RPIT_08665 PF00448 SRP54-type protein, GTPase domain RPIT_08670 PF02463 RecF/RecN/SMC N terminal domain RPIT_08670 PF06470 SMC proteins Flexible Hinge Domain RPIT_08680 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_08680 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RPIT_08680 PF06827 Zinc finger found in FPG and IleRS RPIT_08685 PF00035 Double-stranded RNA binding motif RPIT_08685 PF14622 Ribonuclease-III-like RPIT_08690 PF01783 Ribosomal L32p protein family RPIT_08695 PF02620 Large ribosomal RNA subunit accumulation protein YceD RPIT_08700 PF01467 Cytidylyltransferase-like RPIT_08710 PF00270 DEAD/DEAH box helicase RPIT_08710 PF00271 Helicase conserved C-terminal domain RPIT_08710 PF17191 RecG wedge domain RPIT_08725 PF00830 Ribosomal L28 family RPIT_08730 PF10150 Ribonuclease E/G family RPIT_08740 PF07690 Major Facilitator Superfamily RPIT_08745 PF08903 Domain of unknown function (DUF1846) RPIT_08750 PF00364 Biotin-requiring enzyme RPIT_08750 PF00561 alpha/beta hydrolase fold RPIT_08755 PF00708 Acylphosphatase RPIT_08765 PF00334 Nucleoside diphosphate kinase RPIT_08775 PF02875 Mur ligase family, glutamate ligase domain RPIT_08775 PF08245 Mur ligase middle domain RPIT_08785 PF00133 tRNA synthetases class I (I, L, M and V) RPIT_08785 PF08264 Anticodon-binding domain of tRNA RPIT_08790 PF14685 Tricorn protease PDZ domain RPIT_08790 PF03572 Peptidase family S41 RPIT_08790 PF07676 WD40-like Beta Propeller Repeat RPIT_08790 PF14684 Tricorn protease C1 domain RPIT_08800 PF10431 C-terminal, D2-small domain, of ClpB protein RPIT_08800 PF06689 ClpX C4-type zinc finger RPIT_08800 PF07724 AAA domain (Cdc48 subfamily) RPIT_08805 PF00574 Clp protease RPIT_08810 PF00574 Clp protease RPIT_08815 PF01594 AI-2E family transporter RPIT_08820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RPIT_08820 PF05698 Bacterial trigger factor protein (TF) C-terminus RPIT_08820 PF05697 Bacterial trigger factor protein (TF) RPIT_08860 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_08875 PF00480 ROK family RPIT_08880 PF04960 Glutaminase RPIT_08900 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_08900 PF00107 Zinc-binding dehydrogenase RPIT_08910 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_08910 PF06827 Zinc finger found in FPG and IleRS RPIT_08910 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RPIT_08915 PF02502 Ribose/Galactose Isomerase RPIT_08920 PF13530 Sterol carrier protein domain RPIT_08920 PF17668 Acetyltransferase (GNAT) domain RPIT_08925 PF03120 NAD-dependent DNA ligase OB-fold domain RPIT_08925 PF12826 Helix-hairpin-helix motif RPIT_08925 PF01653 NAD-dependent DNA ligase adenylation domain RPIT_08925 PF00533 BRCA1 C Terminus (BRCT) domain RPIT_08925 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RPIT_08930 PF01433 Peptidase family M1 domain RPIT_08930 PF11838 ERAP1-like C-terminal domain RPIT_08940 PF00156 Phosphoribosyl transferase domain RPIT_08945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RPIT_08945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RPIT_08950 PF01979 Amidohydrolase family RPIT_08955 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RPIT_08955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RPIT_08960 PF00271 Helicase conserved C-terminal domain RPIT_08960 PF00270 DEAD/DEAH box helicase RPIT_08960 PF08494 DEAD/H associated RPIT_08965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_08965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RPIT_08970 PF00356 Bacterial regulatory proteins, lacI family RPIT_08975 PF02610 L-arabinose isomerase RPIT_08975 PF11762 L-arabinose isomerase C-terminal domain RPIT_08980 PF00596 Class II Aldolase and Adducin N-terminal domain RPIT_08990 PF00501 AMP-binding enzyme RPIT_09000 PF01565 FAD binding domain RPIT_09000 PF02913 FAD linked oxidases, C-terminal domain RPIT_09005 PF08281 Sigma-70, region 4 RPIT_09005 PF04542 Sigma-70 region 2 RPIT_09020 PF12848 ABC transporter RPIT_09020 PF00005 ABC transporter RPIT_09060 PF00929 Exonuclease RPIT_09095 PF00202 Aminotransferase class-III RPIT_09110 PF02649 Type I GTP cyclohydrolase folE2 RPIT_09115 PF00145 C-5 cytosine-specific DNA methylase RPIT_09115 PF12728 Helix-turn-helix domain RPIT_09190 PF00274 Fructose-bisphosphate aldolase class-I RPIT_09195 PF01266 FAD dependent oxidoreductase RPIT_09205 PF16657 Maltogenic Amylase, C-terminal domain RPIT_09205 PF00128 Alpha amylase, catalytic domain RPIT_09210 PF00085 Thioredoxin RPIT_09215 PF04239 Protein of unknown function (DUF421) RPIT_09225 PF13340 Putative transposase of IS4/5 family (DUF4096) RPIT_09290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RPIT_09290 PF00364 Biotin-requiring enzyme RPIT_09290 PF00289 Biotin carboxylase, N-terminal domain RPIT_09290 PF02785 Biotin carboxylase C-terminal domain RPIT_09295 PF00535 Glycosyl transferase family 2 RPIT_09295 PF02709 N-terminal domain of galactosyltransferase RPIT_09305 PF13439 Glycosyltransferase Family 4 RPIT_09305 PF00534 Glycosyl transferases group 1 RPIT_09340 PF01555 DNA methylase RPIT_09410 PF00578 AhpC/TSA family RPIT_09415 PF01205 Uncharacterized protein family UPF0029 RPIT_09415 PF09186 Domain of unknown function (DUF1949) RPIT_09425 PF04542 Sigma-70 region 2 RPIT_09425 PF08281 Sigma-70, region 4 RPIT_09450 PF01230 HIT domain RPIT_09475 PF00817 impB/mucB/samB family RPIT_09475 PF11799 impB/mucB/samB family C-terminal domain RPIT_09480 PF00186 Dihydrofolate reductase RPIT_09490 PF00303 Thymidylate synthase RPIT_09495 PF01725 Ham1 family RPIT_09500 PF01138 3' exoribonuclease family, domain 1 RPIT_09500 PF03725 3' exoribonuclease family, domain 2 RPIT_09505 PF01177 Asp/Glu/Hydantoin racemase RPIT_09515 PF02617 ATP-dependent Clp protease adaptor protein ClpS RPIT_09520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RPIT_09520 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RPIT_09535 PF02446 4-alpha-glucanotransferase RPIT_09545 PF07690 Major Facilitator Superfamily RPIT_09555 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RPIT_09555 PF05221 S-adenosyl-L-homocysteine hydrolase RPIT_09560 PF01220 Dehydroquinase class II RPIT_09570 PF03966 Trm112p-like protein RPIT_09575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RPIT_09575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RPIT_09575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RPIT_09575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RPIT_09600 PF02467 Transcription factor WhiB RPIT_09610 PF01050 Mannose-6-phosphate isomerase RPIT_09610 PF00483 Nucleotidyl transferase RPIT_09625 PF03816 Cell envelope-related transcriptional attenuator domain RPIT_09630 PF03816 Cell envelope-related transcriptional attenuator domain RPIT_09635 PF00731 AIR carboxylase RPIT_09640 PF02222 ATP-grasp domain RPIT_09640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RPIT_09655 PF01039 Carboxyl transferase domain RPIT_09665 PF02545 Maf-like protein RPIT_09680 PF00293 NUDIX domain RPIT_09685 PF00364 Biotin-requiring enzyme RPIT_09685 PF00289 Biotin carboxylase, N-terminal domain RPIT_09685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RPIT_09685 PF02785 Biotin carboxylase C-terminal domain RPIT_09695 PF13193 AMP-binding enzyme C-terminal domain RPIT_09695 PF00501 AMP-binding enzyme RPIT_09700 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_09700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RPIT_09705 PF01048 Phosphorylase superfamily RPIT_09710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RPIT_09710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RPIT_09710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RPIT_09710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RPIT_09730 PF09334 tRNA synthetases class I (M) RPIT_09730 PF08264 Anticodon-binding domain of tRNA RPIT_09735 PF00075 RNase H RPIT_09740 PF00072 Response regulator receiver domain RPIT_09740 PF00196 Bacterial regulatory proteins, luxR family RPIT_09745 PF13185 GAF domain RPIT_09745 PF07730 Histidine kinase RPIT_09745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_09745 PF13492 GAF domain RPIT_09755 PF00962 Adenosine/AMP deaminase RPIT_09765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RPIT_09785 PF02608 ABC transporter substrate-binding protein PnrA-like RPIT_09800 PF00571 CBS domain RPIT_09800 PF01595 Cyclin M transmembrane N-terminal domain RPIT_09800 PF03471 Transporter associated domain RPIT_09805 PF00551 Formyl transferase RPIT_09815 PF00474 Sodium:solute symporter family RPIT_09820 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RPIT_09820 PF00056 lactate/malate dehydrogenase, NAD binding domain RPIT_09840 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RPIT_09840 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RPIT_09845 PF02142 MGS-like domain RPIT_09845 PF01808 AICARFT/IMPCHase bienzyme RPIT_09850 PF00551 Formyl transferase RPIT_09865 PF00549 CoA-ligase RPIT_09865 PF02629 CoA binding domain RPIT_09870 PF08442 ATP-grasp domain RPIT_09870 PF00549 CoA-ligase RPIT_09880 PF13361 UvrD-like helicase C-terminal domain RPIT_09880 PF00580 UvrD/REP helicase N-terminal domain RPIT_09885 PF13091 PLD-like domain RPIT_09885 PF13396 Phospholipase_D-nuclease N-terminal RPIT_09895 PF04226 Transglycosylase associated protein RPIT_09900 PF00072 Response regulator receiver domain RPIT_09900 PF00196 Bacterial regulatory proteins, luxR family RPIT_09925 PF02540 NAD synthase RPIT_09925 PF00117 Glutamine amidotransferase class-I RPIT_09925 PF00958 GMP synthase C terminal domain RPIT_09930 PF00291 Pyridoxal-phosphate dependent enzyme RPIT_09940 PF01152 Bacterial-like globin RPIT_09945 PF01817 Chorismate mutase type II RPIT_09945 PF02153 Prephenate dehydrogenase RPIT_09950 PF00478 IMP dehydrogenase / GMP reductase domain RPIT_09955 PF00478 IMP dehydrogenase / GMP reductase domain RPIT_09955 PF00571 CBS domain RPIT_09965 PF00118 TCP-1/cpn60 chaperonin family RPIT_09970 PF00166 Chaperonin 10 Kd subunit RPIT_09975 PF04055 Radical SAM superfamily RPIT_09975 PF06968 Biotin and Thiamin Synthesis associated domain RPIT_09980 PF12464 Maltose acetyltransferase RPIT_09980 PF00132 Bacterial transferase hexapeptide (six repeats) RPIT_09990 PF02682 Carboxyltransferase domain, subdomain C and D RPIT_09995 PF03746 LamB/YcsF family RPIT_10005 PF18096 THUMP domain-like RPIT_10010 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RPIT_10010 PF00293 NUDIX domain RPIT_10010 PF09297 NADH pyrophosphatase zinc ribbon domain RPIT_10020 PF12911 N-terminal TM domain of oligopeptide transport permease C RPIT_10020 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_10025 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_10030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RPIT_10035 PF00814 Glycoprotease family RPIT_10040 PF00583 Acetyltransferase (GNAT) family RPIT_10045 PF00814 Glycoprotease family RPIT_10050 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RPIT_10055 PF00270 DEAD/DEAH box helicase RPIT_10055 PF00271 Helicase conserved C-terminal domain RPIT_10060 PF00534 Glycosyl transferases group 1 RPIT_10060 PF13439 Glycosyltransferase Family 4 RPIT_10065 PF04314 Copper chaperone PCu(A)C RPIT_10075 PF01256 Carbohydrate kinase RPIT_10075 PF03853 YjeF-related protein N-terminus RPIT_10080 PF01648 4'-phosphopantetheinyl transferase superfamily RPIT_10085 PF01380 SIS domain RPIT_10090 PF00485 Phosphoribulokinase / Uridine kinase family RPIT_10095 PF00294 pfkB family carbohydrate kinase RPIT_10100 PF05195 Aminopeptidase P, N-terminal domain RPIT_10100 PF00557 Metallopeptidase family M24 RPIT_10120 PF01769 Divalent cation transporter RPIT_10120 PF00571 CBS domain RPIT_10120 PF03448 MgtE intracellular N domain RPIT_10135 PF10609 NUBPL iron-transfer P-loop NTPase RPIT_10135 PF01883 Iron-sulfur cluster assembly protein RPIT_10140 PF02416 mttA/Hcf106 family RPIT_10150 PF04542 Sigma-70 region 2 RPIT_10150 PF08281 Sigma-70, region 4 RPIT_10155 PF00701 Dihydrodipicolinate synthetase family RPIT_10160 PF01596 O-methyltransferase RPIT_10165 PF00483 Nucleotidyl transferase RPIT_10170 PF13439 Glycosyltransferase Family 4 RPIT_10170 PF00534 Glycosyl transferases group 1 RPIT_10185 PF03641 Possible lysine decarboxylase RPIT_10190 PF01546 Peptidase family M20/M25/M40 RPIT_10190 PF07687 Peptidase dimerisation domain RPIT_10195 PF01841 Transglutaminase-like superfamily RPIT_10195 PF08379 Bacterial transglutaminase-like N-terminal region RPIT_10205 PF04174 A circularly permuted ATPgrasp RPIT_10215 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle RPIT_10215 PF14602 Hexapeptide repeat of succinyl-transferase RPIT_10225 PF00005 ABC transporter RPIT_10225 PF00664 ABC transporter transmembrane region RPIT_10230 PF00664 ABC transporter transmembrane region RPIT_10230 PF00005 ABC transporter RPIT_10235 PF01039 Carboxyl transferase domain RPIT_10245 PF00364 Biotin-requiring enzyme RPIT_10245 PF02436 Conserved carboxylase domain RPIT_10245 PF00682 HMGL-like RPIT_10250 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit RPIT_10255 PF00155 Aminotransferase class I and II RPIT_10260 PF00037 4Fe-4S binding domain RPIT_10270 PF01343 Peptidase family S49 RPIT_10275 PF02780 Transketolase, C-terminal domain RPIT_10275 PF02779 Transketolase, pyrimidine binding domain RPIT_10275 PF00456 Transketolase, thiamine diphosphate binding domain RPIT_10315 PF00857 Isochorismatase family RPIT_10320 PF02080 TrkA-C domain RPIT_10320 PF03471 Transporter associated domain RPIT_10320 PF00999 Sodium/hydrogen exchanger family RPIT_10335 PF00132 Bacterial transferase hexapeptide (six repeats) RPIT_10335 PF06426 Serine acetyltransferase, N-terminal RPIT_10345 PF00005 ABC transporter RPIT_10355 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RPIT_10355 PF06722 Protein of unknown function (DUF1205) RPIT_10380 PF03167 Uracil DNA glycosylase superfamily RPIT_10385 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RPIT_10385 PF01243 Pyridoxamine 5'-phosphate oxidase RPIT_10390 PF00378 Enoyl-CoA hydratase/isomerase RPIT_10405 PF01037 Lrp/AsnC ligand binding domain RPIT_10410 PF12697 Alpha/beta hydrolase family RPIT_10420 PF01381 Helix-turn-helix RPIT_10440 PF01381 Helix-turn-helix RPIT_10450 PF00072 Response regulator receiver domain RPIT_10465 PF01926 50S ribosome-binding GTPase RPIT_10465 PF06071 Protein of unknown function (DUF933) RPIT_10470 PF01497 Periplasmic binding protein RPIT_10475 PF01032 FecCD transport family RPIT_10480 PF01032 FecCD transport family RPIT_10485 PF00005 ABC transporter RPIT_10495 PF02127 Aminopeptidase I zinc metalloprotease (M18) RPIT_10500 PF02646 RmuC family RPIT_10505 PF00291 Pyridoxal-phosphate dependent enzyme RPIT_10505 PF00585 C-terminal regulatory domain of Threonine dehydratase RPIT_10510 PF02401 LytB protein RPIT_10520 PF02601 Exonuclease VII, large subunit RPIT_10520 PF13742 OB-fold nucleic acid binding domain RPIT_10525 PF02609 Exonuclease VII small subunit RPIT_10535 PF01255 Putative undecaprenyl diphosphate synthase RPIT_10540 PF03006 Haemolysin-III related RPIT_10545 PF13638 PIN domain RPIT_10545 PF02562 PhoH-like protein RPIT_10550 PF03190 Protein of unknown function, DUF255 RPIT_10555 PF01694 Rhomboid family RPIT_10560 PF02585 GlcNAc-PI de-N-acetylase RPIT_10570 PF01272 Transcription elongation factor, GreA/GreB, C-term RPIT_10570 PF03449 Transcription elongation factor, N-terminal RPIT_10585 PF03167 Uracil DNA glycosylase superfamily RPIT_10595 PF01625 Peptide methionine sulfoxide reductase RPIT_10610 PF00248 Aldo/keto reductase family RPIT_10625 PF04228 Putative neutral zinc metallopeptidase RPIT_10630 PF00293 NUDIX domain RPIT_10655 PF15975 Flotillin RPIT_10655 PF01145 SPFH domain / Band 7 family RPIT_10685 PF03060 Nitronate monooxygenase RPIT_10690 PF02541 Ppx/GppA phosphatase family RPIT_10705 PF03952 Enolase, N-terminal domain RPIT_10705 PF00113 Enolase, C-terminal TIM barrel domain RPIT_10710 PF03819 MazG nucleotide pyrophosphohydrolase domain RPIT_10720 PF00271 Helicase conserved C-terminal domain RPIT_10720 PF00270 DEAD/DEAH box helicase RPIT_10720 PF17757 UvrB interaction domain RPIT_10720 PF02559 CarD-like/TRCF domain RPIT_10720 PF03461 TRCF domain RPIT_10725 PF01195 Peptidyl-tRNA hydrolase RPIT_10730 PF01386 Ribosomal L25p family RPIT_10730 PF14693 Ribosomal protein TL5, C-terminal domain RPIT_10735 PF08021 Siderophore-interacting FAD-binding domain RPIT_10735 PF04954 Siderophore-interacting protein RPIT_10740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RPIT_10740 PF14572 Phosphoribosyl synthetase-associated domain RPIT_10745 PF00132 Bacterial transferase hexapeptide (six repeats) RPIT_10745 PF12804 MobA-like NTP transferase domain RPIT_10750 PF00512 His Kinase A (phospho-acceptor) domain RPIT_10750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_10750 PF00672 HAMP domain RPIT_10755 PF00486 Transcriptional regulatory protein, C terminal RPIT_10755 PF00072 Response regulator receiver domain RPIT_10765 PF00005 ABC transporter RPIT_10780 PF08281 Sigma-70, region 4 RPIT_10780 PF04542 Sigma-70 region 2 RPIT_10830 PF01568 Molydopterin dinucleotide binding domain RPIT_10830 PF00384 Molybdopterin oxidoreductase RPIT_10830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RPIT_10840 PF04976 DMSO reductase anchor subunit (DmsC) RPIT_10850 PF12161 HsdM N-terminal domain RPIT_10850 PF02384 N-6 DNA Methylase RPIT_10860 PF14338 Mrr N-terminal domain RPIT_10860 PF04471 Restriction endonuclease RPIT_10865 PF08463 EcoEI R protein C-terminal RPIT_10865 PF00271 Helicase conserved C-terminal domain RPIT_10865 PF04851 Type III restriction enzyme, res subunit RPIT_10865 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RPIT_10890 PF18267 Rubredoxin NAD+ reductase C-terminal domain RPIT_10890 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_10890 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RPIT_10890 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RPIT_10890 PF04324 BFD-like [2Fe-2S] binding domain RPIT_10895 PF18267 Rubredoxin NAD+ reductase C-terminal domain RPIT_10895 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_10895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RPIT_10895 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RPIT_10895 PF04324 BFD-like [2Fe-2S] binding domain RPIT_10900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RPIT_10900 PF01568 Molydopterin dinucleotide binding domain RPIT_10900 PF00384 Molybdopterin oxidoreductase RPIT_10905 PF07690 Major Facilitator Superfamily RPIT_10925 PF03352 Methyladenine glycosylase RPIT_10930 PF00440 Bacterial regulatory proteins, tetR family RPIT_10930 PF16925 Tetracyclin repressor-like, C-terminal domain RPIT_10940 PF01047 MarR family RPIT_10945 PF08544 GHMP kinases C terminal RPIT_10945 PF00288 GHMP kinases N terminal domain RPIT_10950 PF00398 Ribosomal RNA adenine dimethylase RPIT_10955 PF01026 TatD related DNase RPIT_10960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RPIT_10965 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RPIT_10965 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase RPIT_10980 PF00005 ABC transporter RPIT_11000 PF00860 Permease family RPIT_11025 PF03454 MoeA C-terminal region (domain IV) RPIT_11025 PF00994 Probable molybdopterin binding domain RPIT_11025 PF03453 MoeA N-terminal region (domain I and II) RPIT_11030 PF01812 5-formyltetrahydrofolate cyclo-ligase family RPIT_11045 PF01741 Large-conductance mechanosensitive channel, MscL RPIT_11090 PF01180 Dihydroorotate dehydrogenase RPIT_11095 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RPIT_11095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RPIT_11095 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RPIT_11095 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RPIT_11095 PF10371 Domain of unknown function RPIT_11100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RPIT_11100 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_11105 PF00085 Thioredoxin RPIT_11110 PF08241 Methyltransferase domain RPIT_11115 PF01325 Iron dependent repressor, N-terminal DNA binding domain RPIT_11115 PF18357 Diphteria toxin repressor SH3 domain RPIT_11115 PF02742 Iron dependent repressor, metal binding and dimerisation domain RPIT_11125 PF00266 Aminotransferase class-V RPIT_11140 PF02785 Biotin carboxylase C-terminal domain RPIT_11140 PF02436 Conserved carboxylase domain RPIT_11140 PF00682 HMGL-like RPIT_11140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RPIT_11140 PF00364 Biotin-requiring enzyme RPIT_11140 PF00289 Biotin carboxylase, N-terminal domain RPIT_11150 PF00860 Permease family RPIT_11160 PF11228 Protein of unknown function (DUF3027) RPIT_11165 PF00313 'Cold-shock' DNA-binding domain RPIT_11170 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RPIT_11180 PF00293 NUDIX domain RPIT_11195 PF00117 Glutamine amidotransferase class-I RPIT_11195 PF00958 GMP synthase C terminal domain RPIT_11195 PF02540 NAD synthase RPIT_11200 PF00118 TCP-1/cpn60 chaperonin family RPIT_11215 PF01238 Phosphomannose isomerase type I RPIT_11240 PF01053 Cys/Met metabolism PLP-dependent enzyme RPIT_11260 PF01323 DSBA-like thioredoxin domain RPIT_11265 PF09190 DALR domain RPIT_11265 PF01406 tRNA synthetases class I (C) catalytic domain RPIT_11270 PF00588 SpoU rRNA Methylase family RPIT_11270 PF08032 RNA 2'-O ribose methyltransferase substrate binding RPIT_11275 PF00464 Serine hydroxymethyltransferase RPIT_11290 PF02542 YgbB family RPIT_11295 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RPIT_11300 PF02559 CarD-like/TRCF domain RPIT_11310 PF00072 Response regulator receiver domain RPIT_11310 PF00486 Transcriptional regulatory protein, C terminal RPIT_11315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_11315 PF00512 His Kinase A (phospho-acceptor) domain RPIT_11320 PF01895 PhoU domain RPIT_11325 PF00300 Histidine phosphatase superfamily (branch 1) RPIT_11330 PF00300 Histidine phosphatase superfamily (branch 1) RPIT_11335 PF01594 AI-2E family transporter RPIT_11340 PF00128 Alpha amylase, catalytic domain RPIT_11340 PF11941 Domain of unknown function (DUF3459) RPIT_11345 PF00583 Acetyltransferase (GNAT) family RPIT_11350 PF00465 Iron-containing alcohol dehydrogenase RPIT_11355 PF00364 Biotin-requiring enzyme RPIT_11355 PF00682 HMGL-like RPIT_11355 PF02436 Conserved carboxylase domain RPIT_11365 PF01039 Carboxyl transferase domain RPIT_11370 PF00682 HMGL-like RPIT_11370 PF02436 Conserved carboxylase domain RPIT_11380 PF05448 Acetyl xylan esterase (AXE1) RPIT_11395 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11400 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11405 PF00356 Bacterial regulatory proteins, lacI family RPIT_11415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RPIT_11415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RPIT_11430 PF02779 Transketolase, pyrimidine binding domain RPIT_11430 PF02780 Transketolase, C-terminal domain RPIT_11435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RPIT_11435 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_11440 PF02817 e3 binding domain RPIT_11440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RPIT_11440 PF00364 Biotin-requiring enzyme RPIT_11445 PF00455 DeoR C terminal sensor domain RPIT_11445 PF08220 DeoR-like helix-turn-helix domain RPIT_11455 PF13460 NAD(P)H-binding RPIT_11455 PF11066 Protein of unknown function (DUF2867) RPIT_11460 PF00923 Transaldolase/Fructose-6-phosphate aldolase RPIT_11465 PF12146 Serine aminopeptidase, S33 RPIT_11470 PF03099 Biotin/lipoate A/B protein ligase family RPIT_11470 PF10437 Bacterial lipoate protein ligase C-terminus RPIT_11480 PF00356 Bacterial regulatory proteins, lacI family RPIT_11485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RPIT_11485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RPIT_11490 PF02952 L-fucose isomerase, C-terminal domain RPIT_11490 PF07881 L-fucose isomerase, first N-terminal domain RPIT_11490 PF07882 L-fucose isomerase, second N-terminal domain RPIT_11495 PF00356 Bacterial regulatory proteins, lacI family RPIT_11500 PF02653 Branched-chain amino acid transport system / permease component RPIT_11505 PF00005 ABC transporter RPIT_11520 PF04542 Sigma-70 region 2 RPIT_11520 PF08281 Sigma-70, region 4 RPIT_11550 PF00196 Bacterial regulatory proteins, luxR family RPIT_11555 PF01116 Fructose-bisphosphate aldolase class-II RPIT_11570 PF01595 Cyclin M transmembrane N-terminal domain RPIT_11570 PF00571 CBS domain RPIT_11570 PF03471 Transporter associated domain RPIT_11575 PF01595 Cyclin M transmembrane N-terminal domain RPIT_11575 PF03471 Transporter associated domain RPIT_11575 PF00571 CBS domain RPIT_11585 PF04264 YceI-like domain RPIT_11590 PF04011 LemA family RPIT_11595 PF00156 Phosphoribosyl transferase domain RPIT_11605 PF03023 Lipid II flippase MurJ RPIT_11630 PF00251 Glycosyl hydrolases family 32 N-terminal domain RPIT_11630 PF08244 Glycosyl hydrolases family 32 C terminal RPIT_11640 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11645 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11650 PF00356 Bacterial regulatory proteins, lacI family RPIT_11655 PF01266 FAD dependent oxidoreductase RPIT_11655 PF00355 Rieske [2Fe-2S] domain RPIT_11660 PF01238 Phosphomannose isomerase type I RPIT_11670 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11675 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11690 PF00356 Bacterial regulatory proteins, lacI family RPIT_11710 PF05552 Conserved TM helix RPIT_11710 PF00924 Mechanosensitive ion channel RPIT_11715 PF02540 NAD synthase RPIT_11720 PF00005 ABC transporter RPIT_11720 PF00571 CBS domain RPIT_11725 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11730 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11740 PF00571 CBS domain RPIT_11740 PF00005 ABC transporter RPIT_11745 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11760 PF00487 Fatty acid desaturase RPIT_11765 PF00111 2Fe-2S iron-sulfur cluster binding domain RPIT_11765 PF00970 Oxidoreductase FAD-binding domain RPIT_11765 PF00175 Oxidoreductase NAD-binding domain RPIT_11775 PF01554 MatE RPIT_11780 PF07995 Glucose / Sorbosone dehydrogenase RPIT_11790 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RPIT_11790 PF01243 Pyridoxamine 5'-phosphate oxidase RPIT_11795 PF00542 Ribosomal protein L7/L12 C-terminal domain RPIT_11795 PF16320 Ribosomal protein L7/L12 dimerisation domain RPIT_11800 PF02861 Clp amino terminal domain, pathogenicity island component RPIT_11800 PF17871 AAA lid domain RPIT_11800 PF07724 AAA domain (Cdc48 subfamily) RPIT_11800 PF00004 ATPase family associated with various cellular activities (AAA) RPIT_11800 PF10431 C-terminal, D2-small domain, of ClpB protein RPIT_11805 PF00128 Alpha amylase, catalytic domain RPIT_11805 PF11941 Domain of unknown function (DUF3459) RPIT_11815 PF10011 Predicted membrane protein (DUF2254) RPIT_11825 PF00933 Glycosyl hydrolase family 3 N terminal domain RPIT_11825 PF01915 Glycosyl hydrolase family 3 C-terminal domain RPIT_11835 PF02110 Hydroxyethylthiazole kinase family RPIT_11840 PF08543 Phosphomethylpyrimidine kinase RPIT_11840 PF02581 Thiamine monophosphate synthase RPIT_11840 PF03070 TENA/THI-4/PQQC family RPIT_11845 PF08543 Phosphomethylpyrimidine kinase RPIT_11850 PF02581 Thiamine monophosphate synthase RPIT_11850 PF03070 TENA/THI-4/PQQC family RPIT_11850 PF08543 Phosphomethylpyrimidine kinase RPIT_11855 PF02535 ZIP Zinc transporter RPIT_11875 PF00343 Carbohydrate phosphorylase RPIT_11890 PF02233 NAD(P) transhydrogenase beta subunit RPIT_11895 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RPIT_11895 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RPIT_11895 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RPIT_11905 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RPIT_11905 PF00056 lactate/malate dehydrogenase, NAD binding domain RPIT_11915 PF13411 MerR HTH family regulatory protein RPIT_11920 PF00226 DnaJ domain RPIT_11920 PF01556 DnaJ C terminal domain RPIT_11920 PF00684 DnaJ central domain RPIT_11925 PF01025 GrpE RPIT_11930 PF00012 Hsp70 protein RPIT_11940 PF17967 Pullulanase N2 domain RPIT_11940 PF11852 Domain of unknown function (DUF3372) RPIT_11940 PF03714 Bacterial pullanase-associated domain RPIT_11940 PF18494 Pullulanase Ins domain RPIT_11940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RPIT_11955 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11960 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_11980 PF02653 Branched-chain amino acid transport system / permease component RPIT_11985 PF00005 ABC transporter RPIT_11990 PF00480 ROK family RPIT_11995 PF00005 ABC transporter RPIT_12000 PF00356 Bacterial regulatory proteins, lacI family RPIT_12005 PF00251 Glycosyl hydrolases family 32 N-terminal domain RPIT_12005 PF08244 Glycosyl hydrolases family 32 C terminal RPIT_12010 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RPIT_12010 PF03033 Glycosyltransferase family 28 N-terminal domain RPIT_12030 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RPIT_12030 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RPIT_12105 PF00291 Pyridoxal-phosphate dependent enzyme RPIT_12105 PF14821 Threonine synthase N terminus RPIT_12130 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_12135 PF07681 DoxX RPIT_12140 PF00072 Response regulator receiver domain RPIT_12140 PF00486 Transcriptional regulatory protein, C terminal RPIT_12145 PF00512 His Kinase A (phospho-acceptor) domain RPIT_12145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_12145 PF00672 HAMP domain RPIT_12160 PF01206 Sulfurtransferase TusA RPIT_12165 PF04143 Sulphur transport RPIT_12170 PF01791 DeoC/LacD family aldolase RPIT_12175 PF00005 ABC transporter RPIT_12175 PF00664 ABC transporter transmembrane region RPIT_12190 PF00155 Aminotransferase class I and II RPIT_12195 PF00133 tRNA synthetases class I (I, L, M and V) RPIT_12195 PF08264 Anticodon-binding domain of tRNA RPIT_12200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RPIT_12205 PF00583 Acetyltransferase (GNAT) family RPIT_12210 PF04337 Protein of unknown function, DUF480 RPIT_12215 PF13840 ACT domain RPIT_12215 PF01842 ACT domain RPIT_12215 PF00696 Amino acid kinase family RPIT_12225 PF05872 Bacterial protein of unknown function (DUF853) RPIT_12260 PF14437 MafB19-like deaminase RPIT_12275 PF14256 YwiC-like protein RPIT_12280 PF00378 Enoyl-CoA hydratase/isomerase RPIT_12285 PF03009 Glycerophosphoryl diester phosphodiesterase family RPIT_12300 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RPIT_12300 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RPIT_12310 PF03816 Cell envelope-related transcriptional attenuator domain RPIT_12330 PF00849 RNA pseudouridylate synthase RPIT_12360 PF07690 Major Facilitator Superfamily RPIT_12385 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RPIT_12385 PF00754 F5/8 type C domain RPIT_12385 PF13088 BNR repeat-like domain RPIT_12390 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RPIT_12395 PF00480 ROK family RPIT_12400 PF00701 Dihydrodipicolinate synthetase family RPIT_12405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RPIT_12405 PF00005 ABC transporter RPIT_12410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RPIT_12410 PF00005 ABC transporter RPIT_12415 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_12420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RPIT_12425 PF07729 FCD domain RPIT_12425 PF00392 Bacterial regulatory proteins, gntR family RPIT_12435 PF02585 GlcNAc-PI de-N-acetylase RPIT_12440 PF00581 Rhodanese-like domain RPIT_12450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_12450 PF00512 His Kinase A (phospho-acceptor) domain RPIT_12450 PF00672 HAMP domain RPIT_12455 PF00072 Response regulator receiver domain RPIT_12455 PF00486 Transcriptional regulatory protein, C terminal RPIT_12480 PF03703 Bacterial PH domain RPIT_12490 PF00005 ABC transporter RPIT_12515 PF00534 Glycosyl transferases group 1 RPIT_12515 PF13439 Glycosyltransferase Family 4 RPIT_12525 PF01261 Xylose isomerase-like TIM barrel RPIT_12530 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RPIT_12535 PF00294 pfkB family carbohydrate kinase RPIT_12550 PF00128 Alpha amylase, catalytic domain RPIT_12550 PF02806 Alpha amylase, C-terminal all-beta domain RPIT_12550 PF00686 Starch binding domain RPIT_12560 PF02595 Glycerate kinase family RPIT_12570 PF17933 Tetracyclin repressor-like, C-terminal domain RPIT_12570 PF00440 Bacterial regulatory proteins, tetR family RPIT_12575 PF13732 Domain of unknown function (DUF4162) RPIT_12575 PF00005 ABC transporter RPIT_12590 PF01642 Methylmalonyl-CoA mutase RPIT_12595 PF02310 B12 binding domain RPIT_12595 PF01642 Methylmalonyl-CoA mutase RPIT_12605 PF00005 ABC transporter RPIT_12610 PF07730 Histidine kinase RPIT_12615 PF00196 Bacterial regulatory proteins, luxR family RPIT_12615 PF00072 Response regulator receiver domain RPIT_12625 PF00294 pfkB family carbohydrate kinase RPIT_12635 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RPIT_12640 PF00483 Nucleotidyl transferase RPIT_12645 PF16363 GDP-mannose 4,6 dehydratase RPIT_12650 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RPIT_12680 PF00689 Cation transporting ATPase, C-terminus RPIT_12680 PF00690 Cation transporter/ATPase, N-terminus RPIT_12685 PF00498 FHA domain RPIT_12685 PF12401 Protein of unknown function (DUF2662) RPIT_12700 PF01098 Cell cycle protein RPIT_12705 PF00905 Penicillin binding protein transpeptidase domain RPIT_12710 PF00069 Protein kinase domain RPIT_12710 PF03793 PASTA domain RPIT_12715 PF00117 Glutamine amidotransferase class-I RPIT_12725 PF06781 Cell division protein CrgA RPIT_12730 PF13419 Haloacid dehalogenase-like hydrolase RPIT_12735 PF01336 OB-fold nucleic acid binding domain RPIT_12735 PF00152 tRNA synthetases class II (D, K and N) RPIT_12745 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_12750 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_12755 PF00232 Glycosyl hydrolase family 1 RPIT_12760 PF00356 Bacterial regulatory proteins, lacI family RPIT_12765 PF00171 Aldehyde dehydrogenase family RPIT_12775 PF01381 Helix-turn-helix RPIT_12785 PF02445 Quinolinate synthetase A protein RPIT_12790 PF02910 Fumarate reductase flavoprotein C-term RPIT_12790 PF00890 FAD binding domain RPIT_12795 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RPIT_12795 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RPIT_12800 PF00923 Transaldolase/Fructose-6-phosphate aldolase RPIT_12810 PF07883 Cupin domain RPIT_12830 PF02653 Branched-chain amino acid transport system / permease component RPIT_12835 PF00005 ABC transporter RPIT_12850 PF00356 Bacterial regulatory proteins, lacI family RPIT_12855 PF00294 pfkB family carbohydrate kinase RPIT_12860 PF08125 Mannitol dehydrogenase C-terminal domain RPIT_12860 PF01232 Mannitol dehydrogenase Rossmann domain RPIT_12880 PF07929 Plasmid pRiA4b ORF-3-like protein RPIT_12890 PF00664 ABC transporter transmembrane region RPIT_12890 PF00005 ABC transporter RPIT_12895 PF00005 ABC transporter RPIT_12895 PF00664 ABC transporter transmembrane region RPIT_12900 PF00480 ROK family RPIT_12905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RPIT_12910 PF03976 Polyphosphate kinase 2 (PPK2) RPIT_12915 PF03965 Penicillinase repressor RPIT_12920 PF01654 Cytochrome bd terminal oxidase subunit I RPIT_12925 PF02322 Cytochrome bd terminal oxidase subunit II RPIT_12930 PF00005 ABC transporter RPIT_12930 PF00664 ABC transporter transmembrane region RPIT_12940 PF13439 Glycosyltransferase Family 4 RPIT_12940 PF00534 Glycosyl transferases group 1 RPIT_12945 PF10415 Fumarase C C-terminus RPIT_12945 PF00206 Lyase RPIT_12950 PF00403 Heavy-metal-associated domain RPIT_12960 PF02583 Metal-sensitive transcriptional repressor RPIT_12965 PF00772 DnaB-like helicase N terminal domain RPIT_12965 PF03796 DnaB-like helicase C terminal domain RPIT_12970 PF01022 Bacterial regulatory protein, arsR family RPIT_12975 PF06953 Arsenical resistance operon trans-acting repressor ArsD RPIT_12980 PF02374 Anion-transporting ATPase RPIT_12985 PF01451 Low molecular weight phosphotyrosine protein phosphatase RPIT_12990 PF01451 Low molecular weight phosphotyrosine protein phosphatase RPIT_13000 PF00730 HhH-GPD superfamily base excision DNA repair protein RPIT_13000 PF00633 Helix-hairpin-helix motif RPIT_13020 PF03330 Lytic transglycolase RPIT_13025 PF00483 Nucleotidyl transferase RPIT_13030 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RPIT_13030 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RPIT_13050 PF00781 Diacylglycerol kinase catalytic domain RPIT_13065 PF03030 Inorganic H+ pyrophosphatase RPIT_13075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RPIT_13080 PF09594 Glycosyltransferase family 87 RPIT_13085 PF02388 FemAB family RPIT_13100 PF00905 Penicillin binding protein transpeptidase domain RPIT_13100 PF00912 Transglycosylase RPIT_13105 PF00924 Mechanosensitive ion channel RPIT_13110 PF01743 Poly A polymerase head domain RPIT_13110 PF12627 Probable RNA and SrmB- binding site of polymerase A RPIT_13110 PF13735 tRNA nucleotidyltransferase domain 2 putative RPIT_13120 PF00069 Protein kinase domain RPIT_13120 PF03793 PASTA domain RPIT_13140 PF01068 ATP dependent DNA ligase domain RPIT_13140 PF04679 ATP dependent DNA ligase C terminal region RPIT_13145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RPIT_13145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RPIT_13150 PF00230 Major intrinsic protein RPIT_13160 PF03176 MMPL family RPIT_13165 PF08361 MAATS-type transcriptional repressor, C-terminal region RPIT_13165 PF00440 Bacterial regulatory proteins, tetR family RPIT_13175 PF06452 Carbohydrate family 9 binding domain-like RPIT_13175 PF02018 Carbohydrate binding domain RPIT_13175 PF00331 Glycosyl hydrolase family 10 RPIT_13175 PF00395 S-layer homology domain RPIT_13180 PF13649 Methyltransferase domain RPIT_13185 PF01593 Flavin containing amine oxidoreductase RPIT_13195 PF01593 Flavin containing amine oxidoreductase RPIT_13200 PF00293 NUDIX domain RPIT_13205 PF13411 MerR HTH family regulatory protein RPIT_13220 PF03741 Integral membrane protein TerC family RPIT_13230 PF00893 Small Multidrug Resistance protein RPIT_13235 PF00893 Small Multidrug Resistance protein RPIT_13240 PF06826 Predicted Permease Membrane Region RPIT_13240 PF02080 TrkA-C domain RPIT_13245 PF00296 Luciferase-like monooxygenase RPIT_13250 PF13443 Cro/C1-type HTH DNA-binding domain RPIT_13260 PF00356 Bacterial regulatory proteins, lacI family RPIT_13265 PF16875 Glycosyl hydrolase family 36 N-terminal domain RPIT_13265 PF16874 Glycosyl hydrolase family 36 C-terminal domain RPIT_13270 PF13407 Periplasmic binding protein domain RPIT_13275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RPIT_13275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RPIT_13280 PF02653 Branched-chain amino acid transport system / permease component RPIT_13285 PF00005 ABC transporter RPIT_13295 PF00290 Tryptophan synthase alpha chain RPIT_13305 PF00356 Bacterial regulatory proteins, lacI family RPIT_13325 PF01323 DSBA-like thioredoxin domain RPIT_13330 PF00375 Sodium:dicarboxylate symporter family RPIT_13345 PF00005 ABC transporter RPIT_13345 PF12704 MacB-like periplasmic core domain RPIT_13345 PF02687 FtsX-like permease family RPIT_13365 PF01022 Bacterial regulatory protein, arsR family RPIT_13370 PF02146 Sir2 family RPIT_13375 PF05661 Protein of unknown function (DUF808) RPIT_13380 PF00248 Aldo/keto reductase family RPIT_13395 PF03176 MMPL family RPIT_13405 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RPIT_13415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RPIT_13420 PF13784 Fic/DOC family N-terminal RPIT_13420 PF02661 Fic/DOC family RPIT_13470 PF13538 UvrD-like helicase C-terminal domain RPIT_13470 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain RPIT_13470 PF14490 Helix-hairpin-helix containing domain RPIT_13495 PF00394 Multicopper oxidase RPIT_13495 PF07731 Multicopper oxidase RPIT_13495 PF07732 Multicopper oxidase RPIT_13515 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RPIT_13515 PF01266 FAD dependent oxidoreductase RPIT_13520 PF04198 Putative sugar-binding domain RPIT_13535 PF00085 Thioredoxin RPIT_13545 PF00155 Aminotransferase class I and II RPIT_13550 PF07478 D-ala D-ala ligase C-terminus RPIT_13550 PF01820 D-ala D-ala ligase N-terminus RPIT_13565 PF17762 HTH domain found in ParB protein RPIT_13565 PF02195 ParB-like nuclease domain RPIT_13570 PF13614 AAA domain RPIT_13575 PF02527 rRNA small subunit methyltransferase G RPIT_13585 PF02096 60Kd inner membrane protein RPIT_13590 PF01809 Putative membrane protein insertion efficiency factor RPIT_13595 PF00825 Ribonuclease P RPIT_13600 PF00468 Ribosomal protein L34 RPIT_13605 PF08299 Bacterial dnaA protein helix-turn-helix RPIT_13605 PF00308 Bacterial dnaA protein RPIT_13610 PF02583 Metal-sensitive transcriptional repressor RPIT_13620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RPIT_13620 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_13625 PF00005 ABC transporter RPIT_13630 PF00005 ABC transporter RPIT_13630 PF02687 FtsX-like permease family RPIT_13630 PF12704 MacB-like periplasmic core domain RPIT_13635 PF02768 DNA polymerase III beta subunit, C-terminal domain RPIT_13635 PF00712 DNA polymerase III beta subunit, N-terminal domain RPIT_13635 PF02767 DNA polymerase III beta subunit, central domain RPIT_13645 PF02463 RecF/RecN/SMC N terminal domain RPIT_13655 PF05258 Dna[CI] antecedent, DciA RPIT_13665 PF00986 DNA gyrase B subunit, carboxyl terminus RPIT_13665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_13665 PF01751 Toprim domain RPIT_13665 PF00204 DNA gyrase B RPIT_13670 PF00521 DNA gyrase/topoisomerase IV, subunit A RPIT_13670 PF03989 DNA gyrase C-terminal domain, beta-propeller RPIT_13675 PF12089 Transmembrane domain of unknown function (DUF3566) RPIT_13685 PF02661 Fic/DOC family RPIT_13685 PF13784 Fic/DOC family N-terminal RPIT_13700 PF06965 Na+/H+ antiporter 1 RPIT_13720 PF02146 Sir2 family RPIT_13730 PF02421 Ferrous iron transport protein B RPIT_13730 PF07664 Ferrous iron transport protein B C terminus RPIT_13730 PF07670 Nucleoside recognition RPIT_13750 PF01694 Rhomboid family RPIT_13760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RPIT_13765 PF02397 Bacterial sugar transferase RPIT_13775 PF13477 Glycosyl transferase 4-like RPIT_13775 PF00534 Glycosyl transferases group 1 RPIT_13780 PF01370 NAD dependent epimerase/dehydratase family RPIT_13785 PF13614 AAA domain RPIT_13795 PF01522 Polysaccharide deacetylase RPIT_13805 PF00534 Glycosyl transferases group 1 RPIT_13820 PF05362 Lon protease (S16) C-terminal proteolytic domain RPIT_13820 PF02190 ATP-dependent protease La (LON) substrate-binding domain RPIT_13820 PF00004 ATPase family associated with various cellular activities (AAA) RPIT_13835 PF00535 Glycosyl transferase family 2 RPIT_13840 PF00535 Glycosyl transferase family 2 RPIT_13855 PF00535 Glycosyl transferase family 2 RPIT_13860 PF00535 Glycosyl transferase family 2 RPIT_13870 PF02780 Transketolase, C-terminal domain RPIT_13870 PF02779 Transketolase, pyrimidine binding domain RPIT_13875 PF00456 Transketolase, thiamine diphosphate binding domain RPIT_13880 PF00248 Aldo/keto reductase family RPIT_13885 PF02397 Bacterial sugar transferase RPIT_13915 PF00535 Glycosyl transferase family 2 RPIT_13920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RPIT_13920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RPIT_13945 PF13614 AAA domain RPIT_14005 PF00535 Glycosyl transferase family 2 RPIT_14010 PF00872 Transposase, Mutator family RPIT_14025 PF00664 ABC transporter transmembrane region RPIT_14025 PF00005 ABC transporter RPIT_14040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RPIT_14040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RPIT_14040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RPIT_14060 PF00535 Glycosyl transferase family 2 RPIT_14070 PF02719 Polysaccharide biosynthesis protein RPIT_14085 PF01235 Sodium:alanine symporter family RPIT_14090 PF05681 Fumarate hydratase (Fumerase) RPIT_14090 PF05683 Fumarase C-terminus RPIT_14100 PF02371 Transposase IS116/IS110/IS902 family RPIT_14100 PF01548 Transposase RPIT_14105 PF00072 Response regulator receiver domain RPIT_14105 PF00486 Transcriptional regulatory protein, C terminal RPIT_14110 PF00512 His Kinase A (phospho-acceptor) domain RPIT_14110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RPIT_14110 PF18719 ArlS sensor domain RPIT_14115 PF02785 Biotin carboxylase C-terminal domain RPIT_14115 PF00289 Biotin carboxylase, N-terminal domain RPIT_14115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RPIT_14135 PF13545 Crp-like helix-turn-helix domain RPIT_14135 PF00027 Cyclic nucleotide-binding domain RPIT_14145 PF07690 Major Facilitator Superfamily RPIT_14150 PF00664 ABC transporter transmembrane region RPIT_14150 PF00005 ABC transporter RPIT_14155 PF07690 Major Facilitator Superfamily RPIT_14160 PF02417 Chromate transporter RPIT_14165 PF00285 Citrate synthase, C-terminal domain RPIT_14185 PF14572 Phosphoribosyl synthetase-associated domain RPIT_14185 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RPIT_14190 PF03358 NADPH-dependent FMN reductase RPIT_14195 PF03315 Serine dehydratase beta chain RPIT_14195 PF03313 Serine dehydratase alpha chain RPIT_14205 PF08240 Alcohol dehydrogenase GroES-like domain RPIT_14205 PF00107 Zinc-binding dehydrogenase RPIT_14230 PF00437 Type II/IV secretion system protein RPIT_14255 PF01063 Amino-transferase class IV RPIT_14265 PF03358 NADPH-dependent FMN reductase RPIT_14280 PF02585 GlcNAc-PI de-N-acetylase RPIT_14320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RPIT_14320 PF00128 Alpha amylase, catalytic domain RPIT_14325 PF03618 Kinase/pyrophosphorylase RPIT_14345 PF00391 PEP-utilising enzyme, mobile domain RPIT_14345 PF02896 PEP-utilising enzyme, TIM barrel domain RPIT_14345 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RPIT_14375 PF00209 Sodium:neurotransmitter symporter family RPIT_14380 PF03883 Peroxide stress protein YaaA RPIT_14400 PF00501 AMP-binding enzyme RPIT_14400 PF01553 Acyltransferase RPIT_14405 PF00106 short chain dehydrogenase RPIT_14415 PF01548 Transposase RPIT_14415 PF02371 Transposase IS116/IS110/IS902 family RPIT_14420 PF00871 Acetokinase family RPIT_14425 PF07085 DRTGG domain RPIT_14425 PF01515 Phosphate acetyl/butaryl transferase RPIT_14440 PF00296 Luciferase-like monooxygenase RPIT_14445 PF03334 Na+/H+ antiporter subunit RPIT_14455 PF01899 Na+/H+ ion antiporter subunit RPIT_14470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RPIT_14470 PF00361 Proton-conducting membrane transporter RPIT_14470 PF13244 Domain of unknown function (DUF4040) RPIT_14470 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RPIT_14475 PF01261 Xylose isomerase-like TIM barrel RPIT_14480 PF00501 AMP-binding enzyme RPIT_14490 PF00581 Rhodanese-like domain RPIT_14500 PF01250 Ribosomal protein S6 RPIT_14505 PF00436 Single-strand binding protein family RPIT_14510 PF01084 Ribosomal protein S18 RPIT_14515 PF03948 Ribosomal protein L9, C-terminal domain RPIT_14515 PF01281 Ribosomal protein L9, N-terminal domain RPIT_14520 PF00962 Adenosine/AMP deaminase RPIT_14540 PF17755 UvrA DNA-binding domain RPIT_14540 PF17760 UvrA interaction domain RPIT_14540 PF00005 ABC transporter RPIT_14545 PF06902 Divergent 4Fe-4S mono-cluster RPIT_14550 PF00583 Acetyltransferase (GNAT) family RPIT_14565 PF00999 Sodium/hydrogen exchanger family RPIT_14565 PF02254 TrkA-N domain RPIT_14570 PF00106 short chain dehydrogenase RPIT_14580 PF01699 Sodium/calcium exchanger protein RPIT_14595 PF02796 Helix-turn-helix domain of resolvase RPIT_14595 PF00239 Resolvase, N terminal domain RPIT_14600 PF01636 Phosphotransferase enzyme family RPIT_14605 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RPIT_14630 PF13614 AAA domain RPIT_14645 PF00239 Resolvase, N terminal domain RPIT_14645 PF02796 Helix-turn-helix domain of resolvase RPIT_14650 PF00872 Transposase, Mutator family RPIT_14665 PF00809 Pterin binding enzyme RPIT_14685 PF07676 WD40-like Beta Propeller Repeat RPIT_14685 PF00326 Prolyl oligopeptidase family RPIT_14685 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RPIT_14700 PF01594 AI-2E family transporter RPIT_14715 PF00005 ABC transporter RPIT_14715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RPIT_14720 PF00005 ABC transporter RPIT_14720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RPIT_14725 PF12911 N-terminal TM domain of oligopeptide transport permease C RPIT_14725 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_14730 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_14735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RPIT_14740 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RPIT_14740 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RPIT_14745 PF01261 Xylose isomerase-like TIM barrel RPIT_14750 PF01022 Bacterial regulatory protein, arsR family RPIT_14775 PF13632 Glycosyl transferase family group 2 RPIT_14775 PF00535 Glycosyl transferase family 2 RPIT_14780 PF00009 Elongation factor Tu GTP binding domain RPIT_14780 PF03144 Elongation factor Tu domain 2 RPIT_14780 PF16658 Class II release factor RF3, C-terminal domain RPIT_14785 PF09278 MerR, DNA binding RPIT_14785 PF00376 MerR family regulatory protein RPIT_14795 PF00011 Hsp20/alpha crystallin family RPIT_14805 PF16363 GDP-mannose 4,6 dehydratase RPIT_14820 PF01740 STAS domain RPIT_14820 PF00916 Sulfate permease family RPIT_14830 PF03006 Haemolysin-III related RPIT_14845 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_14850 PF00528 Binding-protein-dependent transport system inner membrane component RPIT_14870 PF04358 DsrC like protein RPIT_14875 PF07992 Pyridine nucleotide-disulphide oxidoreductase RPIT_14880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RPIT_14880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain