RPIT_00010	PWY-5278	sulfite oxidation III
RPIT_00010	PWY-5340	sulfate activation for sulfonation
RPIT_00010	PWY-6683	sulfate reduction III (assimilatory)
RPIT_00010	PWY-6932	selenate reduction
RPIT_00015	PWY-5278	sulfite oxidation III
RPIT_00015	PWY-5340	sulfate activation for sulfonation
RPIT_00015	PWY-6683	sulfate reduction III (assimilatory)
RPIT_00015	PWY-6932	selenate reduction
RPIT_00025	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_00030	PWY-5392	reductive TCA cycle II
RPIT_00030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_00040	PWY-5194	siroheme biosynthesis
RPIT_00040	PWY-5196	factor 430 biosynthesis
RPIT_00040	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_00045	PWY-5194	siroheme biosynthesis
RPIT_00045	PWY-5196	factor 430 biosynthesis
RPIT_00045	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_00115	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_00115	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_00115	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_00115	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_00340	PWY-4981	L-proline biosynthesis II (from arginine)
RPIT_00340	PWY-4984	urea cycle
RPIT_00340	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_00370	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_00380	PWY-7801	RPIT_00380
RPIT_00415	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
RPIT_00430	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RPIT_00465	PWY-4983	L-citrulline-nitric oxide cycle
RPIT_00465	PWY-4984	urea cycle
RPIT_00465	PWY-5	canavanine biosynthesis
RPIT_00465	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_00465	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_00495	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
RPIT_00495	PWY-7820	RPIT_00495
RPIT_00600	PWY-7378	aminopropanol phosphate biosynthesis II
RPIT_00620	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_00620	PWY-5054	sorbitol biosynthesis I
RPIT_00620	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RPIT_00620	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_00620	PWY-5659	GDP-mannose biosynthesis
RPIT_00620	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_00620	PWY-621	sucrose degradation III (sucrose invertase)
RPIT_00620	PWY-622	starch biosynthesis
RPIT_00620	PWY-6981	chitin biosynthesis
RPIT_00620	PWY-6992	1,5-anhydrofructose degradation
RPIT_00620	PWY-7238	sucrose biosynthesis II
RPIT_00620	PWY-7347	sucrose biosynthesis III
RPIT_00620	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_00675	PWY-1042	glycolysis IV (plant cytosol)
RPIT_00675	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_00675	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_00675	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_01075	PWY-6807	xyloglucan degradation II (exoglucanase)
RPIT_01115	PWY-4261	glycerol degradation I
RPIT_01115	PWY-6118	glycerol-3-phosphate shuttle
RPIT_01115	PWY-6952	glycerophosphodiester degradation
RPIT_01120	PWY-4261	glycerol degradation I
RPIT_01120	PWY-6118	glycerol-3-phosphate shuttle
RPIT_01120	PWY-6952	glycerophosphodiester degradation
RPIT_01225	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
RPIT_01230	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
RPIT_01290	PWY-7181	pyrimidine deoxyribonucleosides degradation
RPIT_01330	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_01360	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_01360	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_01360	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_01360	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_01465	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_01465	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_01465	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_01465	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RPIT_01465	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_01465	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_01540	PWY-7805	RPIT_01540
RPIT_01540	PWY-7807	RPIT_01540
RPIT_01545	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_01545	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_01560	PWY-6599	guanine and guanosine salvage II
RPIT_01560	PWY-6609	adenine and adenosine salvage III
RPIT_01560	PWY-6610	adenine and adenosine salvage IV
RPIT_01560	PWY-6620	guanine and guanosine salvage
RPIT_01570	PWY-5663	tetrahydrobiopterin biosynthesis I
RPIT_01570	PWY-5664	tetrahydrobiopterin biosynthesis II
RPIT_01570	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_01570	PWY-6703	preQ<sub>0</sub> biosynthesis
RPIT_01570	PWY-6983	tetrahydrobiopterin biosynthesis III
RPIT_01570	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RPIT_01570	PWY-7852	RPIT_01570
RPIT_01575	PWY-6614	tetrahydrofolate biosynthesis
RPIT_01580	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_01580	PWY-6148	tetrahydromethanopterin biosynthesis
RPIT_01580	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RPIT_01580	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RPIT_01585	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_01585	PWY-6148	tetrahydromethanopterin biosynthesis
RPIT_01585	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RPIT_01585	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RPIT_01585	PWY-7852	RPIT_01585
RPIT_01585	PWY-7853	RPIT_01585
RPIT_01595	PWY-6614	tetrahydrofolate biosynthesis
RPIT_01680	PWY-2941	L-lysine biosynthesis II
RPIT_01680	PWY-2942	L-lysine biosynthesis III
RPIT_01680	PWY-5097	L-lysine biosynthesis VI
RPIT_01680	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_01680	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
RPIT_01680	PWY-6559	spermidine biosynthesis II
RPIT_01680	PWY-6562	norspermidine biosynthesis
RPIT_01680	PWY-7153	grixazone biosynthesis
RPIT_01680	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_01680	PWY-7977	RPIT_01680
RPIT_01685	PWY-3341	L-proline biosynthesis III
RPIT_01685	PWY-4981	L-proline biosynthesis II (from arginine)
RPIT_01685	PWY-6344	L-ornithine degradation II (Stickland reaction)
RPIT_01700	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_01700	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_01875	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_01905	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_01905	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_01905	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_01915	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RPIT_01915	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
RPIT_01915	PWY-6920	6-gingerol analog biosynthesis
RPIT_01915	PWY-7007	methyl ketone biosynthesis
RPIT_01915	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
RPIT_01915	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
RPIT_01915	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
RPIT_01915	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
RPIT_01915	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
RPIT_01915	PWY-735	jasmonic acid biosynthesis
RPIT_01915	PWY-7574	propanoyl-CoA degradation II
RPIT_01915	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RPIT_01915	PWY-7726	RPIT_01915
RPIT_01915	PWY-7854	RPIT_01915
RPIT_01915	PWY-7858	RPIT_01915
RPIT_01945	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_01945	PWY-6124	inosine-5'-phosphate biosynthesis II
RPIT_01945	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_01945	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_01970	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_01975	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_01975	PWY-6124	inosine-5'-phosphate biosynthesis II
RPIT_01975	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_01990	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_01990	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_01990	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_01995	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_01995	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_01995	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_02015	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_02015	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_02015	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_02050	PWY-5392	reductive TCA cycle II
RPIT_02050	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_02050	PWY-5690	TCA cycle II (plants and fungi)
RPIT_02050	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_02050	PWY-6728	methylaspartate cycle
RPIT_02050	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_02050	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_02050	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_02055	PWY-723	alkylnitronates degradation
RPIT_02115	PWY-6823	molybdenum cofactor biosynthesis
RPIT_02130	PWY-6748	nitrate reduction VII (denitrification)
RPIT_02135	PWY-6748	nitrate reduction VII (denitrification)
RPIT_02160	PWY-6823	molybdenum cofactor biosynthesis
RPIT_02160	PWY-7887	RPIT_02160
RPIT_02170	PWY-6823	molybdenum cofactor biosynthesis
RPIT_02340	PWY-6823	molybdenum cofactor biosynthesis
RPIT_02380	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_02380	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_02380	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_02380	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_02385	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_02385	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_02385	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_02410	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_02410	PWY-6549	L-glutamine biosynthesis III
RPIT_02410	PWY-6728	methylaspartate cycle
RPIT_02410	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_02410	PWY-7124	ethylene biosynthesis V (engineered)
RPIT_02410	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_02410	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_02430	PWY-5674	nitrate reduction IV (dissimilatory)
RPIT_02550	PWY-3821	galactose degradation III
RPIT_02550	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_02550	PWY-6527	stachyose degradation
RPIT_02575	PWY-5839	menaquinol-7 biosynthesis
RPIT_02575	PWY-5851	demethylmenaquinol-9 biosynthesis
RPIT_02575	PWY-5852	demethylmenaquinol-8 biosynthesis I
RPIT_02575	PWY-5853	demethylmenaquinol-6 biosynthesis I
RPIT_02575	PWY-5890	menaquinol-10 biosynthesis
RPIT_02575	PWY-5891	menaquinol-11 biosynthesis
RPIT_02575	PWY-5892	menaquinol-12 biosynthesis
RPIT_02575	PWY-5895	menaquinol-13 biosynthesis
RPIT_02580	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_02585	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_02595	PWY-5839	menaquinol-7 biosynthesis
RPIT_02595	PWY-5844	menaquinol-9 biosynthesis
RPIT_02595	PWY-5849	menaquinol-6 biosynthesis
RPIT_02595	PWY-5890	menaquinol-10 biosynthesis
RPIT_02595	PWY-5891	menaquinol-11 biosynthesis
RPIT_02595	PWY-5892	menaquinol-12 biosynthesis
RPIT_02595	PWY-5895	menaquinol-13 biosynthesis
RPIT_02620	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_02620	PWY-5901	2,3-dihydroxybenzoate biosynthesis
RPIT_02620	PWY-6406	salicylate biosynthesis I
RPIT_02720	PWY-5392	reductive TCA cycle II
RPIT_02720	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_02785	PWY-4202	arsenate detoxification I (glutaredoxin)
RPIT_02785	PWY-5532	adenosine nucleotides degradation IV
RPIT_02785	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_02785	PWY-6608	guanosine nucleotides degradation III
RPIT_02785	PWY-6609	adenine and adenosine salvage III
RPIT_02785	PWY-6611	adenine and adenosine salvage V
RPIT_02785	PWY-6620	guanine and guanosine salvage
RPIT_02785	PWY-6627	salinosporamide A biosynthesis
RPIT_02785	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
RPIT_02785	PWY-7179	purine deoxyribonucleosides degradation I
RPIT_02785	PWY-7179-1	purine deoxyribonucleosides degradation
RPIT_02815	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_02815	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_02815	PWY-7953	RPIT_02815
RPIT_02870	PWY-7942	RPIT_02870
RPIT_02965	PWY-5480	pyruvate fermentation to ethanol I
RPIT_02965	PWY-5485	pyruvate fermentation to acetate IV
RPIT_02965	PWY-5493	reductive monocarboxylic acid cycle
RPIT_03000	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_03030	PWY-6807	xyloglucan degradation II (exoglucanase)
RPIT_03110	PWY-5350	thiosulfate disproportionation III (rhodanese)
RPIT_03110	PWY-7927	RPIT_03110
RPIT_03200	PWY-7799	RPIT_03200
RPIT_03200	PWY-7800	RPIT_03200
RPIT_03225	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_03225	PWY-5723	Rubisco shunt
RPIT_03230	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RPIT_03240	PWY-6717	(1,4)-&beta;-xylan degradation
RPIT_03240	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RPIT_03285	PWY-5642	2,4-dinitrotoluene degradation
RPIT_03310	PWY-5940	streptomycin biosynthesis
RPIT_03310	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
RPIT_03310	PWY-7241	<I>myo</I>-inositol degradation II
RPIT_03415	PWY-6854	ethylene biosynthesis III (microbes)
RPIT_03455	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_03490	PWY-7799	RPIT_03490
RPIT_03490	PWY-7800	RPIT_03490
RPIT_03500	PWY-381	nitrate reduction II (assimilatory)
RPIT_03500	PWY-5675	nitrate reduction V (assimilatory)
RPIT_03500	PWY-6549	L-glutamine biosynthesis III
RPIT_03500	PWY-6963	ammonia assimilation cycle I
RPIT_03500	PWY-6964	ammonia assimilation cycle II
RPIT_03540	PWY-381	nitrate reduction II (assimilatory)
RPIT_03540	PWY-5675	nitrate reduction V (assimilatory)
RPIT_03540	PWY-6549	L-glutamine biosynthesis III
RPIT_03540	PWY-6963	ammonia assimilation cycle I
RPIT_03540	PWY-6964	ammonia assimilation cycle II
RPIT_03570	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RPIT_03570	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RPIT_03640	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_03640	PWY-4521	arsenite oxidation I (respiratory)
RPIT_03640	PWY-6692	Fe(II) oxidation
RPIT_03640	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_03645	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_03645	PWY-4521	arsenite oxidation I (respiratory)
RPIT_03645	PWY-6692	Fe(II) oxidation
RPIT_03645	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_03700	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_03700	PWY-6596	adenosine nucleotides degradation I
RPIT_03700	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_03715	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_03715	PWY-6692	Fe(II) oxidation
RPIT_03715	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
RPIT_03715	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_03795	PWY-6164	3-dehydroquinate biosynthesis I
RPIT_03815	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RPIT_03815	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RPIT_03815	PWY-6897	thiamin salvage II
RPIT_03815	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RPIT_03815	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RPIT_03815	PWY-7356	thiamin salvage IV (yeast)
RPIT_03815	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_03830	PWY-2201	folate transformations I
RPIT_03830	PWY-3841	folate transformations II
RPIT_03895	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
RPIT_03895	PWY-7820	RPIT_03895
RPIT_03925	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_03925	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_03925	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_03925	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_04010	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_04010	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_04010	PWY-7953	RPIT_04010
RPIT_04015	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_04015	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_04015	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_04020	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_04020	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_04025	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_04025	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_04025	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_04025	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_04030	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_04030	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_04030	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_04030	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_04035	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_04035	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_04035	PWY-7953	RPIT_04035
RPIT_04070	PWY-7884	RPIT_04070
RPIT_04080	PWY-1042	glycolysis IV (plant cytosol)
RPIT_04080	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_04080	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_04080	PWY-5723	Rubisco shunt
RPIT_04080	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_04080	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_04080	PWY-6901	superpathway of glucose and xylose degradation
RPIT_04080	PWY-7003	glycerol degradation to butanol
RPIT_04080	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RPIT_04080	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_04125	PWY-7851	RPIT_04125
RPIT_04210	PWY-1042	glycolysis IV (plant cytosol)
RPIT_04210	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_04210	PWY-6901	superpathway of glucose and xylose degradation
RPIT_04210	PWY-7003	glycerol degradation to butanol
RPIT_04215	PWY-1042	glycolysis IV (plant cytosol)
RPIT_04215	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_04215	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_04215	PWY-6901	superpathway of glucose and xylose degradation
RPIT_04215	PWY-7003	glycerol degradation to butanol
RPIT_04220	PWY-1042	glycolysis IV (plant cytosol)
RPIT_04220	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_04220	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_04220	PWY-7003	glycerol degradation to butanol
RPIT_04260	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_04260	PWY-6855	chitin degradation I (archaea)
RPIT_04260	PWY-6906	chitin derivatives degradation
RPIT_04270	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_04295	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_04295	PWY-4521	arsenite oxidation I (respiratory)
RPIT_04295	PWY-6692	Fe(II) oxidation
RPIT_04295	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_04360	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RPIT_04400	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_04435	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RPIT_04435	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RPIT_04435	PWY-5989	stearate biosynthesis II (bacteria and plants)
RPIT_04435	PWY-6113	superpathway of mycolate biosynthesis
RPIT_04435	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RPIT_04435	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RPIT_04435	PWY-7663	gondoate biosynthesis (anaerobic)
RPIT_04435	PWY-7664	oleate biosynthesis IV (anaerobic)
RPIT_04435	PWY-7858	RPIT_04435
RPIT_04435	PWYG-321	mycolate biosynthesis
RPIT_04515	PWY-5667	CDP-diacylglycerol biosynthesis I
RPIT_04515	PWY-5981	CDP-diacylglycerol biosynthesis III
RPIT_04515	PWY-7817	RPIT_04515
RPIT_04535	PWY-7560	methylerythritol phosphate pathway II
RPIT_04615	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RPIT_04615	PWY-6167	flavin biosynthesis II (archaea)
RPIT_04615	PWY-6168	flavin biosynthesis III (fungi)
RPIT_04615	PWY-7863	RPIT_04615
RPIT_04635	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
RPIT_04635	PWY-6853	ethylene biosynthesis II (microbes)
RPIT_04635	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_04645	PWY-2941	L-lysine biosynthesis II
RPIT_04645	PWY-2942	L-lysine biosynthesis III
RPIT_04645	PWY-5097	L-lysine biosynthesis VI
RPIT_04680	PWY-3341	L-proline biosynthesis III
RPIT_04680	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_04690	PWY-3341	L-proline biosynthesis III
RPIT_04690	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_04695	PWY-5381	pyridine nucleotide cycling (plants)
RPIT_04695	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RPIT_04695	PWY-7761	RPIT_04695
RPIT_04715	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_04720	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RPIT_04720	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RPIT_04720	PWY-7766	RPIT_04720
RPIT_04730	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_04730	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_04735	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_04735	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_04740	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_04745	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_04745	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_04980	PWY-6700	queuosine biosynthesis
RPIT_05035	PWY-6871	3-methylbutanol biosynthesis
RPIT_05180	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_05205	PWY-4381	fatty acid biosynthesis initiation I
RPIT_05250	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_05250	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_05250	PWY-7560	methylerythritol phosphate pathway II
RPIT_05260	PWY-1042	glycolysis IV (plant cytosol)
RPIT_05260	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_05260	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_05260	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_05490	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RPIT_05490	PWY-5743	3-hydroxypropanoate cycle
RPIT_05490	PWY-5744	glyoxylate assimilation
RPIT_05490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_05490	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_05490	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_05490	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPIT_05520	PWY-7199	pyrimidine deoxyribonucleosides salvage
RPIT_05620	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_05620	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_05620	PWY-7560	methylerythritol phosphate pathway II
RPIT_05675	PWY-5057	L-valine degradation II
RPIT_05675	PWY-5076	L-leucine degradation III
RPIT_05675	PWY-5078	L-isoleucine degradation II
RPIT_05675	PWY-5101	L-isoleucine biosynthesis II
RPIT_05675	PWY-5103	L-isoleucine biosynthesis III
RPIT_05675	PWY-5104	L-isoleucine biosynthesis IV
RPIT_05675	PWY-5108	L-isoleucine biosynthesis V
RPIT_05675	PWY-7767	RPIT_05675
RPIT_05710	PWY-5269	cardiolipin biosynthesis II
RPIT_05710	PWY-5668	cardiolipin biosynthesis I
RPIT_05710	PWY-7817	RPIT_05710
RPIT_05755	PWY-1042	glycolysis IV (plant cytosol)
RPIT_05755	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_05755	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_05755	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_05955	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RPIT_05955	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPIT_05965	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RPIT_05965	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_06000	PWY-5344	L-homocysteine biosynthesis
RPIT_06035	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RPIT_06035	PWY-2161	folate polyglutamylation
RPIT_06035	PWY-2201	folate transformations I
RPIT_06035	PWY-3841	folate transformations II
RPIT_06095	PWY-7205	CMP phosphorylation
RPIT_06100	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
RPIT_06120	PWY-2201	folate transformations I
RPIT_06120	PWY-3841	folate transformations II
RPIT_06120	PWY-7977	RPIT_06120
RPIT_06130	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_06130	PWY-5723	Rubisco shunt
RPIT_06150	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPIT_06150	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RPIT_06160	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_06170	PWY-5686	UMP biosynthesis
RPIT_06170	PWY-7790	RPIT_06170
RPIT_06170	PWY-7791	RPIT_06170
RPIT_06175	PWY-5686	UMP biosynthesis
RPIT_06180	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_06180	PWY-5686	UMP biosynthesis
RPIT_06180	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_06180	PWY-7790	RPIT_06180
RPIT_06180	PWY-7791	RPIT_06180
RPIT_06185	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_06185	PWY-5686	UMP biosynthesis
RPIT_06185	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_06185	PWY-7790	RPIT_06185
RPIT_06185	PWY-7791	RPIT_06185
RPIT_06205	PWY-6164	3-dehydroquinate biosynthesis I
RPIT_06210	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_06215	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_06220	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_06300	PWY-6605	adenine and adenosine salvage II
RPIT_06300	PWY-6610	adenine and adenosine salvage IV
RPIT_06300	PWY-7805	RPIT_06300
RPIT_06300	PWY-7807	RPIT_06300
RPIT_06355	PWY-5884	wax esters biosynthesis I
RPIT_06355	PWY-6733	sporopollenin precursors biosynthesis
RPIT_06355	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
RPIT_06355	PWY-7782	RPIT_06355
RPIT_06455	PWY-5958	acridone alkaloid biosynthesis
RPIT_06455	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RPIT_06455	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RPIT_06510	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RPIT_06525	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPIT_06525	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RPIT_06525	PWY-6936	seleno-amino acid biosynthesis
RPIT_06525	PWY-702	L-methionine biosynthesis II
RPIT_06530	PWY-7887	RPIT_06530
RPIT_06530	PWY-7892	RPIT_06530
RPIT_06540	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RPIT_06550	PWY-7900	RPIT_06550
RPIT_06560	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
RPIT_06560	PWY-622	starch biosynthesis
RPIT_06560	PWY-7900	RPIT_06560
RPIT_06580	PWY-2661	trehalose biosynthesis V
RPIT_06585	PWY-2661	trehalose biosynthesis V
RPIT_06595	PWY-2723	trehalose degradation V
RPIT_06595	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_06595	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RPIT_06595	PWY-5661	GDP-glucose biosynthesis
RPIT_06595	PWY-5940	streptomycin biosynthesis
RPIT_06595	PWY-5941	glycogen degradation II (eukaryotic)
RPIT_06595	PWY-622	starch biosynthesis
RPIT_06595	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_06595	PWY-6731	starch degradation III
RPIT_06595	PWY-6737	starch degradation V
RPIT_06595	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_06595	PWY-6981	chitin biosynthesis
RPIT_06595	PWY-7238	sucrose biosynthesis II
RPIT_06595	PWY-7343	UDP-glucose biosynthesis
RPIT_06595	PWY-7900	RPIT_06595
RPIT_06595	PWY-7902	RPIT_06595
RPIT_06605	PWY-5741	ethylmalonyl-CoA pathway
RPIT_06605	PWY-5743	3-hydroxypropanoate cycle
RPIT_06605	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_06605	PWY-6728	methylaspartate cycle
RPIT_06605	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_06605	PWY-7854	RPIT_06605
RPIT_06665	PWY-7980	RPIT_06665
RPIT_06675	PWY-7980	RPIT_06675
RPIT_06710	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_06710	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_06710	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_06735	PWY-7980	RPIT_06735
RPIT_06740	PWY-702	L-methionine biosynthesis II
RPIT_06750	PWY-2941	L-lysine biosynthesis II
RPIT_06750	PWY-2942	L-lysine biosynthesis III
RPIT_06750	PWY-5097	L-lysine biosynthesis VI
RPIT_06770	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPIT_06775	PWY-3821	galactose degradation III
RPIT_06775	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_06775	PWY-6527	stachyose degradation
RPIT_06815	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_06935	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_06935	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
RPIT_06935	PWY-6638	sulfolactate degradation III
RPIT_06935	PWY-6642	(<i>R</i>)-cysteate degradation
RPIT_06935	PWY-6643	coenzyme M biosynthesis II
RPIT_06935	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_06935	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPIT_06935	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_06940	PWY-6840	homoglutathione biosynthesis
RPIT_06940	PWY-7255	ergothioneine biosynthesis I (bacteria)
RPIT_07000	PWY-5101	L-isoleucine biosynthesis II
RPIT_07000	PWY-5103	L-isoleucine biosynthesis III
RPIT_07000	PWY-5104	L-isoleucine biosynthesis IV
RPIT_07000	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_07010	PWY-5350	thiosulfate disproportionation III (rhodanese)
RPIT_07010	PWY-7927	RPIT_07010
RPIT_07020	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_07020	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_07020	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_07020	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_07020	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_07020	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_07020	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_07020	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPIT_07050	PWY-2941	L-lysine biosynthesis II
RPIT_07050	PWY-5097	L-lysine biosynthesis VI
RPIT_07055	PWY-2781	<i>cis</i>-zeatin biosynthesis
RPIT_07110	PWY-5269	cardiolipin biosynthesis II
RPIT_07110	PWY-5668	cardiolipin biosynthesis I
RPIT_07110	PWY-7817	RPIT_07110
RPIT_07125	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RPIT_07125	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RPIT_07125	PWY-6896	thiamin salvage I
RPIT_07125	PWY-6897	thiamin salvage II
RPIT_07130	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_07130	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_07130	PWY-7953	RPIT_07130
RPIT_07180	PWY-3341	L-proline biosynthesis III
RPIT_07180	PWY-4981	L-proline biosynthesis II (from arginine)
RPIT_07180	PWY-6344	L-ornithine degradation II (Stickland reaction)
RPIT_07180	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_07700	PWY-6825	phosphatidylcholine biosynthesis V
RPIT_07940	PWY-5101	L-isoleucine biosynthesis II
RPIT_07940	PWY-6871	3-methylbutanol biosynthesis
RPIT_07960	PWY-5103	L-isoleucine biosynthesis III
RPIT_07960	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_07965	PWY-5101	L-isoleucine biosynthesis II
RPIT_07965	PWY-5103	L-isoleucine biosynthesis III
RPIT_07965	PWY-5104	L-isoleucine biosynthesis IV
RPIT_07965	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RPIT_07965	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RPIT_07965	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RPIT_07965	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_07970	PWY-5101	L-isoleucine biosynthesis II
RPIT_07970	PWY-5103	L-isoleucine biosynthesis III
RPIT_07970	PWY-5104	L-isoleucine biosynthesis IV
RPIT_07970	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RPIT_07970	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RPIT_07970	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RPIT_07970	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_08080	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RPIT_08080	PWY-7177	UTP and CTP dephosphorylation II
RPIT_08080	PWY-7185	UTP and CTP dephosphorylation I
RPIT_08095	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RPIT_08095	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_08095	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RPIT_08190	PWY-4381	fatty acid biosynthesis initiation I
RPIT_08190	PWY-5743	3-hydroxypropanoate cycle
RPIT_08190	PWY-5744	glyoxylate assimilation
RPIT_08190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_08190	PWY-6722	candicidin biosynthesis
RPIT_08195	PWY-4983	L-citrulline-nitric oxide cycle
RPIT_08195	PWY-4984	urea cycle
RPIT_08195	PWY-5	canavanine biosynthesis
RPIT_08195	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_08195	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_08210	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_08210	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_08215	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_08220	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_08220	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_08330	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
RPIT_08570	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_08570	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RPIT_08570	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_08570	PWY-5690	TCA cycle II (plants and fungi)
RPIT_08570	PWY-6728	methylaspartate cycle
RPIT_08570	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_08570	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_08570	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_08575	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_08575	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RPIT_08575	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_08575	PWY-5690	TCA cycle II (plants and fungi)
RPIT_08575	PWY-6728	methylaspartate cycle
RPIT_08575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_08575	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_08575	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_08585	PWY-6829	tRNA methylation (yeast)
RPIT_08585	PWY-7285	methylwyosine biosynthesis
RPIT_08585	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RPIT_08700	PWY-7851	RPIT_08700
RPIT_08765	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_08765	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RPIT_08765	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_08765	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_08765	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RPIT_08765	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_08765	PWY-7205	CMP phosphorylation
RPIT_08765	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_08765	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_08765	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_08765	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_08765	PWY-7224	purine deoxyribonucleosides salvage
RPIT_08765	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_08765	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPIT_08775	PWY-2161	folate polyglutamylation
RPIT_08940	PWY-7183	pyrimidine nucleobases salvage I
RPIT_08945	PWY-5686	UMP biosynthesis
RPIT_08945	PWY-7790	RPIT_08945
RPIT_08945	PWY-7791	RPIT_08945
RPIT_08950	PWY-5686	UMP biosynthesis
RPIT_08950	PWY-7790	RPIT_08950
RPIT_08950	PWY-7791	RPIT_08950
RPIT_09110	PWY-5663	tetrahydrobiopterin biosynthesis I
RPIT_09110	PWY-5664	tetrahydrobiopterin biosynthesis II
RPIT_09110	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_09110	PWY-6703	preQ<sub>0</sub> biosynthesis
RPIT_09110	PWY-6983	tetrahydrobiopterin biosynthesis III
RPIT_09110	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RPIT_09110	PWY-7852	RPIT_09110
RPIT_09190	PWY-1042	glycolysis IV (plant cytosol)
RPIT_09190	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_09190	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_09190	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_09190	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_09205	PWY-2622	trehalose biosynthesis IV
RPIT_09205	PWY-7900	RPIT_09205
RPIT_09300	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_09300	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_09300	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_09300	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_09480	PWY-3841	folate transformations II
RPIT_09480	PWY-6614	tetrahydrofolate biosynthesis
RPIT_09490	PWY-3841	folate transformations II
RPIT_09490	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_09490	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_09490	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_09490	PWY-7199	pyrimidine deoxyribonucleosides salvage
RPIT_09490	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_09505	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_09505	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_09520	PWY-5381	pyridine nucleotide cycling (plants)
RPIT_09535	PWY-5941	glycogen degradation II (eukaryotic)
RPIT_09535	PWY-6724	starch degradation II
RPIT_09535	PWY-6737	starch degradation V
RPIT_09535	PWY-7238	sucrose biosynthesis II
RPIT_09555	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPIT_09560	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_09560	PWY-6416	quinate degradation II
RPIT_09560	PWY-6707	gallate biosynthesis
RPIT_09565	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_09565	PWY-3861	mannitol degradation II
RPIT_09565	PWY-3881	mannitol biosynthesis
RPIT_09565	PWY-5054	sorbitol biosynthesis I
RPIT_09565	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RPIT_09565	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_09565	PWY-5659	GDP-mannose biosynthesis
RPIT_09565	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_09565	PWY-621	sucrose degradation III (sucrose invertase)
RPIT_09565	PWY-622	starch biosynthesis
RPIT_09565	PWY-6981	chitin biosynthesis
RPIT_09565	PWY-6992	1,5-anhydrofructose degradation
RPIT_09565	PWY-7238	sucrose biosynthesis II
RPIT_09565	PWY-7347	sucrose biosynthesis III
RPIT_09565	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_09565	PWY-7456	mannan degradation
RPIT_09565	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
RPIT_09565	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
RPIT_09575	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_09635	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_09635	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_09655	PWY-4381	fatty acid biosynthesis initiation I
RPIT_09655	PWY-5743	3-hydroxypropanoate cycle
RPIT_09655	PWY-5744	glyoxylate assimilation
RPIT_09655	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_09655	PWY-6722	candicidin biosynthesis
RPIT_09705	PWY-4202	arsenate detoxification I (glutaredoxin)
RPIT_09705	PWY-5532	adenosine nucleotides degradation IV
RPIT_09705	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_09705	PWY-6608	guanosine nucleotides degradation III
RPIT_09705	PWY-6609	adenine and adenosine salvage III
RPIT_09705	PWY-6611	adenine and adenosine salvage V
RPIT_09705	PWY-6620	guanine and guanosine salvage
RPIT_09705	PWY-6627	salinosporamide A biosynthesis
RPIT_09705	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
RPIT_09705	PWY-7179	purine deoxyribonucleosides degradation I
RPIT_09705	PWY-7179-1	purine deoxyribonucleosides degradation
RPIT_09710	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_09765	PWY-6556	pyrimidine ribonucleosides salvage II
RPIT_09765	PWY-7181	pyrimidine deoxyribonucleosides degradation
RPIT_09765	PWY-7193	pyrimidine ribonucleosides salvage I
RPIT_09765	PWY-7199	pyrimidine deoxyribonucleosides salvage
RPIT_09805	PWY-2201	folate transformations I
RPIT_09805	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_09805	PWY-7909	RPIT_09805
RPIT_09820	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_09820	PWY-5392	reductive TCA cycle II
RPIT_09820	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_09820	PWY-5690	TCA cycle II (plants and fungi)
RPIT_09820	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_09820	PWY-6728	methylaspartate cycle
RPIT_09820	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_09820	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_09820	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_09840	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RPIT_09840	PWY-2201	folate transformations I
RPIT_09840	PWY-3841	folate transformations II
RPIT_09840	PWY-5030	L-histidine degradation III
RPIT_09840	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_09840	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RPIT_09840	PWY-7909	RPIT_09840
RPIT_09845	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_09845	PWY-6124	inosine-5'-phosphate biosynthesis II
RPIT_09845	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_09850	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_09850	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RPIT_09865	PWY-5392	reductive TCA cycle II
RPIT_09865	PWY-5537	pyruvate fermentation to acetate V
RPIT_09865	PWY-5538	pyruvate fermentation to acetate VI
RPIT_09865	PWY-5690	TCA cycle II (plants and fungi)
RPIT_09865	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_09865	PWY-6728	methylaspartate cycle
RPIT_09865	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_09865	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_09870	PWY-5392	reductive TCA cycle II
RPIT_09870	PWY-5537	pyruvate fermentation to acetate V
RPIT_09870	PWY-5538	pyruvate fermentation to acetate VI
RPIT_09870	PWY-5690	TCA cycle II (plants and fungi)
RPIT_09870	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_09870	PWY-6728	methylaspartate cycle
RPIT_09870	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_09870	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_09925	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_09930	PWY-6936	seleno-amino acid biosynthesis
RPIT_09945	PWY-3461	L-tyrosine biosynthesis II
RPIT_09945	PWY-3462	L-phenylalanine biosynthesis II
RPIT_09945	PWY-6120	L-tyrosine biosynthesis III
RPIT_09945	PWY-6627	salinosporamide A biosynthesis
RPIT_09945	PWY-7626	bacilysin biosynthesis
RPIT_09955	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_09955	PWY-6596	adenosine nucleotides degradation I
RPIT_09955	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_09975	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RPIT_09995	PWY-4041	&gamma;-glutamyl cycle
RPIT_09995	PWY-7942	RPIT_09995
RPIT_10075	PWY-6938	NADH repair
RPIT_10080	PWY-6012	acyl carrier protein metabolism I
RPIT_10080	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RPIT_10080	PWY-6289	petrobactin biosynthesis
RPIT_10085	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_10090	PWY-3961	phosphopantothenate biosynthesis II
RPIT_10155	PWY-2941	L-lysine biosynthesis II
RPIT_10155	PWY-2942	L-lysine biosynthesis III
RPIT_10155	PWY-5097	L-lysine biosynthesis VI
RPIT_10165	PWY-622	starch biosynthesis
RPIT_10165	PWY-7902	RPIT_10165
RPIT_10170	PWY-7900	RPIT_10170
RPIT_10235	PWY-4381	fatty acid biosynthesis initiation I
RPIT_10235	PWY-5743	3-hydroxypropanoate cycle
RPIT_10235	PWY-5744	glyoxylate assimilation
RPIT_10235	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_10235	PWY-6722	candicidin biosynthesis
RPIT_10275	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_10275	PWY-5723	Rubisco shunt
RPIT_10275	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_10275	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_10275	PWY-6901	superpathway of glucose and xylose degradation
RPIT_10275	PWY-7560	methylerythritol phosphate pathway II
RPIT_10335	PWY-6936	seleno-amino acid biosynthesis
RPIT_10335	PWY-7274	D-cycloserine biosynthesis
RPIT_10335	PWY-7870	RPIT_10335
RPIT_10355	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_10355	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_10355	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_10355	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_10385	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RPIT_10385	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_10510	PWY-7560	methylerythritol phosphate pathway II
RPIT_10685	PWY-723	alkylnitronates degradation
RPIT_10705	PWY-1042	glycolysis IV (plant cytosol)
RPIT_10705	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_10705	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_10705	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_10705	PWY-5723	Rubisco shunt
RPIT_10705	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_10705	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_10705	PWY-6901	superpathway of glucose and xylose degradation
RPIT_10705	PWY-7003	glycerol degradation to butanol
RPIT_10705	PWY-7124	ethylene biosynthesis V (engineered)
RPIT_10705	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RPIT_10725	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
RPIT_10745	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_10800	PWY-2582	brassinosteroid biosynthesis II
RPIT_10800	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RPIT_10800	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RPIT_10800	PWY-6948	sitosterol degradation to androstenedione
RPIT_10800	PWY-699	brassinosteroid biosynthesis I
RPIT_10800	PWY-7299	progesterone biosynthesis
RPIT_10880	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_10890	PWY-6683	sulfate reduction III (assimilatory)
RPIT_10945	PWY-7560	methylerythritol phosphate pathway II
RPIT_10965	PWY-7921	RPIT_10965
RPIT_10965	PWY-7922	RPIT_10965
RPIT_10965	PWY-7979	RPIT_10965
RPIT_10970	PWY-6807	xyloglucan degradation II (exoglucanase)
RPIT_11010	PWY-7918	RPIT_11010
RPIT_11010	PWY-7919	RPIT_11010
RPIT_11025	PWY-6823	molybdenum cofactor biosynthesis
RPIT_11055	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_11055	PWY-6527	stachyose degradation
RPIT_11055	PWY-7238	sucrose biosynthesis II
RPIT_11055	PWY-7343	UDP-glucose biosynthesis
RPIT_11055	PWY-7817	RPIT_11055
RPIT_11060	PWY-6523	nitrite-dependent anaerobic methane oxidation
RPIT_11060	PWY-6748	nitrate reduction VII (denitrification)
RPIT_11060	PWY-7084	nitrifier denitrification
RPIT_11120	PWY-6906	chitin derivatives degradation
RPIT_11120	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
RPIT_11120	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
RPIT_11140	PWY-5750	itaconate biosynthesis
RPIT_11140	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_11140	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
RPIT_11170	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_11170	PWY-6855	chitin degradation I (archaea)
RPIT_11170	PWY-6906	chitin derivatives degradation
RPIT_11195	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_11215	PWY-3861	mannitol degradation II
RPIT_11215	PWY-3881	mannitol biosynthesis
RPIT_11215	PWY-5659	GDP-mannose biosynthesis
RPIT_11215	PWY-6992	1,5-anhydrofructose degradation
RPIT_11215	PWY-7456	mannan degradation
RPIT_11215	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
RPIT_11215	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
RPIT_11240	PWY-801	L-homocysteine and L-cysteine interconversion
RPIT_11275	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_11275	PWY-181	photorespiration
RPIT_11275	PWY-2161	folate polyglutamylation
RPIT_11275	PWY-2201	folate transformations I
RPIT_11275	PWY-3661	glycine betaine degradation I
RPIT_11275	PWY-3661-1	glycine betaine degradation II (mammalian)
RPIT_11275	PWY-3841	folate transformations II
RPIT_11275	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_11290	PWY-7560	methylerythritol phosphate pathway II
RPIT_11295	PWY-7560	methylerythritol phosphate pathway II
RPIT_11325	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_11325	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_11330	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_11330	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_11340	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
RPIT_11340	PWY-622	starch biosynthesis
RPIT_11340	PWY-7900	RPIT_11340
RPIT_11365	PWY-4381	fatty acid biosynthesis initiation I
RPIT_11365	PWY-5743	3-hydroxypropanoate cycle
RPIT_11365	PWY-5744	glyoxylate assimilation
RPIT_11365	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_11365	PWY-6722	candicidin biosynthesis
RPIT_11435	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RPIT_11435	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPIT_11460	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_11460	PWY-5723	Rubisco shunt
RPIT_11470	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RPIT_11470	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RPIT_11555	PWY-1042	glycolysis IV (plant cytosol)
RPIT_11555	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_11555	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_11555	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_11555	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_11595	PWY-5686	UMP biosynthesis
RPIT_11595	PWY-7790	RPIT_11595
RPIT_11595	PWY-7791	RPIT_11595
RPIT_11660	PWY-3861	mannitol degradation II
RPIT_11660	PWY-3881	mannitol biosynthesis
RPIT_11660	PWY-5659	GDP-mannose biosynthesis
RPIT_11660	PWY-6992	1,5-anhydrofructose degradation
RPIT_11660	PWY-7456	mannan degradation
RPIT_11660	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
RPIT_11660	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
RPIT_11790	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RPIT_11790	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_11835	PWY-6897	thiamin salvage II
RPIT_11835	PWY-7356	thiamin salvage IV (yeast)
RPIT_11835	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_11840	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RPIT_11840	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RPIT_11840	PWY-6897	thiamin salvage II
RPIT_11840	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RPIT_11840	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RPIT_11840	PWY-7356	thiamin salvage IV (yeast)
RPIT_11840	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_11845	PWY-6910	hydroxymethylpyrimidine salvage
RPIT_11845	PWY-7356	thiamin salvage IV (yeast)
RPIT_11845	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_11875	PWY-5941	glycogen degradation II (eukaryotic)
RPIT_11875	PWY-6731	starch degradation III
RPIT_11875	PWY-6737	starch degradation V
RPIT_11875	PWY-7238	sucrose biosynthesis II
RPIT_11905	PWY-5481	pyruvate fermentation to lactate
RPIT_11905	PWY-6901	superpathway of glucose and xylose degradation
RPIT_12170	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
RPIT_12215	PWY-2941	L-lysine biosynthesis II
RPIT_12215	PWY-2942	L-lysine biosynthesis III
RPIT_12215	PWY-5097	L-lysine biosynthesis VI
RPIT_12215	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
RPIT_12215	PWY-6559	spermidine biosynthesis II
RPIT_12215	PWY-6562	norspermidine biosynthesis
RPIT_12215	PWY-7153	grixazone biosynthesis
RPIT_12215	PWY-7977	RPIT_12215
RPIT_12270	PWY-7183	pyrimidine nucleobases salvage I
RPIT_12280	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_12355	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_12355	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RPIT_12355	PWY-7242	D-fructuronate degradation
RPIT_12355	PWY-7310	D-glucosaminate degradation
RPIT_12355	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
RPIT_12400	PWY-2941	L-lysine biosynthesis II
RPIT_12400	PWY-2942	L-lysine biosynthesis III
RPIT_12400	PWY-5097	L-lysine biosynthesis VI
RPIT_12440	PWY-5350	thiosulfate disproportionation III (rhodanese)
RPIT_12440	PWY-7927	RPIT_12440
RPIT_12510	PWY-5530	sorbitol biosynthesis II
RPIT_12510	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_12590	PWY-5743	3-hydroxypropanoate cycle
RPIT_12590	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_12590	PWY-6728	methylaspartate cycle
RPIT_12590	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_12590	PWY-7854	RPIT_12590
RPIT_12640	PWY-3221	dTDP-L-rhamnose biosynthesis II
RPIT_12640	PWY-6808	dTDP-D-forosamine biosynthesis
RPIT_12640	PWY-6942	dTDP-D-desosamine biosynthesis
RPIT_12640	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RPIT_12640	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RPIT_12640	PWY-6974	dTDP-L-olivose biosynthesis
RPIT_12640	PWY-6976	dTDP-L-mycarose biosynthesis
RPIT_12640	PWY-7104	dTDP-L-megosamine biosynthesis
RPIT_12640	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RPIT_12640	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RPIT_12640	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RPIT_12640	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RPIT_12640	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RPIT_12640	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RPIT_12640	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RPIT_12640	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RPIT_12640	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RPIT_12640	PWY-7688	RPIT_12640
RPIT_12640	PWY-7814	RPIT_12640
RPIT_12645	PWY-3221	dTDP-L-rhamnose biosynthesis II
RPIT_12645	PWY-6808	dTDP-D-forosamine biosynthesis
RPIT_12645	PWY-6942	dTDP-D-desosamine biosynthesis
RPIT_12645	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RPIT_12645	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RPIT_12645	PWY-6974	dTDP-L-olivose biosynthesis
RPIT_12645	PWY-6976	dTDP-L-mycarose biosynthesis
RPIT_12645	PWY-7104	dTDP-L-megosamine biosynthesis
RPIT_12645	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RPIT_12645	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RPIT_12645	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RPIT_12645	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RPIT_12645	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RPIT_12645	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RPIT_12645	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RPIT_12645	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RPIT_12645	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RPIT_12645	PWY-7688	RPIT_12645
RPIT_12645	PWY-7814	RPIT_12645
RPIT_12700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_12700	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_12700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_12700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_12715	PWY-5958	acridone alkaloid biosynthesis
RPIT_12715	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RPIT_12715	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RPIT_12755	PWY-3121	linamarin degradation
RPIT_12755	PWY-5176	coumarin biosynthesis (via 2-coumarate)
RPIT_12755	PWY-6002	lotaustralin degradation
RPIT_12755	PWY-6788	cellulose degradation II (fungi)
RPIT_12755	PWY-7091	linustatin bioactivation
RPIT_12755	PWY-7092	neolinustatin bioactivation
RPIT_12755	PWY-7913	RPIT_12755
RPIT_12785	PWY-5316	nicotine biosynthesis
RPIT_12785	PWY-7342	superpathway of nicotine biosynthesis
RPIT_12790	PWY-5316	nicotine biosynthesis
RPIT_12790	PWY-7342	superpathway of nicotine biosynthesis
RPIT_12795	PWY-5316	nicotine biosynthesis
RPIT_12795	PWY-5381	pyridine nucleotide cycling (plants)
RPIT_12795	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RPIT_12795	PWY-7342	superpathway of nicotine biosynthesis
RPIT_12800	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_12800	PWY-5723	Rubisco shunt
RPIT_12905	PWY-5386	methylglyoxal degradation I
RPIT_12945	PWY-5392	reductive TCA cycle II
RPIT_12945	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_12945	PWY-5690	TCA cycle II (plants and fungi)
RPIT_12945	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_12945	PWY-6728	methylaspartate cycle
RPIT_12945	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_12945	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_12945	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_12980	PWY-4621	arsenate detoxification II (glutaredoxin)
RPIT_13035	PWY-6558	heparan sulfate biosynthesis (late stages)
RPIT_13065	PWY-7805	RPIT_13065
RPIT_13065	PWY-7807	RPIT_13065
RPIT_13090	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_13100	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_13100	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_13100	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_13100	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_13145	PWY-4261	glycerol degradation I
RPIT_13175	PWY-6717	(1,4)-&beta;-xylan degradation
RPIT_13175	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RPIT_13180	PWY-5839	menaquinol-7 biosynthesis
RPIT_13180	PWY-5844	menaquinol-9 biosynthesis
RPIT_13180	PWY-5849	menaquinol-6 biosynthesis
RPIT_13180	PWY-5890	menaquinol-10 biosynthesis
RPIT_13180	PWY-5891	menaquinol-11 biosynthesis
RPIT_13180	PWY-5892	menaquinol-12 biosynthesis
RPIT_13180	PWY-5895	menaquinol-13 biosynthesis
RPIT_13200	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
RPIT_13200	PWY-6174	mevalonate pathway II (archaea)
RPIT_13200	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
RPIT_13200	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
RPIT_13200	PWY-7102	bisabolene biosynthesis
RPIT_13200	PWY-7391	isoprene biosynthesis II (engineered)
RPIT_13200	PWY-7524	mevalonate pathway III (archaea)
RPIT_13200	PWY-7560	methylerythritol phosphate pathway II
RPIT_13200	PWY-922	mevalonate pathway I
RPIT_13265	PWY-6527	stachyose degradation
RPIT_13275	PWY-4261	glycerol degradation I
RPIT_13515	PWY-4261	glycerol degradation I
RPIT_13515	PWY-6118	glycerol-3-phosphate shuttle
RPIT_13515	PWY-6952	glycerophosphodiester degradation
RPIT_13550	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_13550	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_13550	PWY-7953	RPIT_13550
RPIT_13650	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_13875	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_13875	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_13875	PWY-7560	methylerythritol phosphate pathway II
RPIT_14090	PWY-5392	reductive TCA cycle II
RPIT_14090	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_14090	PWY-5690	TCA cycle II (plants and fungi)
RPIT_14090	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_14090	PWY-6728	methylaspartate cycle
RPIT_14090	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_14090	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_14090	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_14115	PWY-4381	fatty acid biosynthesis initiation I
RPIT_14115	PWY-5743	3-hydroxypropanoate cycle
RPIT_14115	PWY-5744	glyoxylate assimilation
RPIT_14115	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_14115	PWY-6679	jadomycin biosynthesis
RPIT_14115	PWY-6722	candicidin biosynthesis
RPIT_14115	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_14255	PWY-5057	L-valine degradation II
RPIT_14255	PWY-5076	L-leucine degradation III
RPIT_14255	PWY-5078	L-isoleucine degradation II
RPIT_14255	PWY-5101	L-isoleucine biosynthesis II
RPIT_14255	PWY-5103	L-isoleucine biosynthesis III
RPIT_14255	PWY-5104	L-isoleucine biosynthesis IV
RPIT_14255	PWY-5108	L-isoleucine biosynthesis V
RPIT_14255	PWY-7767	RPIT_14255
RPIT_14345	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RPIT_14345	PWY-6549	L-glutamine biosynthesis III
RPIT_14345	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_14345	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPIT_14420	PWY-5482	pyruvate fermentation to acetate II
RPIT_14420	PWY-5485	pyruvate fermentation to acetate IV
RPIT_14420	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_14425	PWY-1281	sulfoacetaldehyde degradation I
RPIT_14425	PWY-5482	pyruvate fermentation to acetate II
RPIT_14425	PWY-5485	pyruvate fermentation to acetate IV
RPIT_14425	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_14425	PWY-6637	sulfolactate degradation II
RPIT_14665	PWY-6614	tetrahydrofolate biosynthesis
RPIT_14690	PWY-6717	(1,4)-&beta;-xylan degradation
RPIT_14690	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RPIT_14740	PWY-4261	glycerol degradation I
RPIT_14805	PWY-3821	galactose degradation III
RPIT_14805	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_14805	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
RPIT_14805	PWY-6527	stachyose degradation
RPIT_14805	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
RPIT_14805	PWY-7344	UDP-D-galactose biosynthesis
RPIT_14880	PWY-6683	sulfate reduction III (assimilatory)