RPIT_00085 SM00327 von Willebrand factor (vWF) type A domain RPIT_00105 SM00506 Appr-1"-p processing enzyme RPIT_00140 SM00237 Domains in Na-Ca exchangers and integrin-beta4 RPIT_00200 SM00642 Alpha-amylase domain RPIT_00295 SM00530 Helix-turn-helix XRE-family like proteins RPIT_00325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_00325 SM00387 Histidine kinase-like ATPases RPIT_00325 SM00388 His Kinase A (phosphoacceptor) domain RPIT_00330 SM00448 cheY-homologous receiver domain RPIT_00330 SM00862 Transcriptional regulatory protein, C terminal RPIT_00335 SM00226 Low molecular weight phosphatase family RPIT_00355 SM00861 Transketolase, pyrimidine binding domain RPIT_00370 SM01005 Alanine racemase, C-terminal domain RPIT_00385 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_00385 SM01232 RPIT_00385 RPIT_00400 SM00642 Alpha-amylase domain RPIT_00420 SM00046 Diacylglycerol kinase catalytic domain (presumed) RPIT_00445 SM00642 Alpha-amylase domain RPIT_00495 SM00984 UDP binding domain RPIT_00500 SM00342 helix_turn_helix, arabinose operon control protein RPIT_00530 SM00382 ATPases associated with a variety of cellular activities RPIT_00550 SM00984 UDP binding domain RPIT_00560 SM00530 Helix-turn-helix XRE-family like proteins RPIT_00600 SM00829 Enoylreductase RPIT_00605 SM00984 UDP binding domain RPIT_00615 SM00829 Enoylreductase RPIT_00640 SM00420 helix_turn_helix, Deoxyribose operon repressor RPIT_00640 SM01134 RPIT_00640 RPIT_00650 SM00836 DALR anticodon binding domain RPIT_00650 SM01016 Arginyl tRNA synthetase N terminal dom RPIT_00725 SM00382 ATPases associated with a variety of cellular activities RPIT_00725 SM00930 RPIT_00725 RPIT_00760 SM00855 Phosphoglycerate mutase family RPIT_00805 SM01060 RPIT_00805 RPIT_00845 SM00220 Serine/Threonine protein kinases, catalytic domain RPIT_00870 SM00382 ATPases associated with a variety of cellular activities RPIT_00895 SM00354 helix_turn _helix lactose operon repressor RPIT_01000 SM00382 ATPases associated with a variety of cellular activities RPIT_01020 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_01020 SM00895 RPIT_01020 RPIT_01035 SM00421 helix_turn_helix, Lux Regulon RPIT_01035 SM00448 cheY-homologous receiver domain RPIT_01050 SM00382 ATPases associated with a variety of cellular activities RPIT_01075 SM01038 Beta galactosidase small chain RPIT_01080 SM00354 helix_turn _helix lactose operon repressor RPIT_01140 SM00901 RPIT_01140 RPIT_01200 SM00382 ATPases associated with a variety of cellular activities RPIT_01210 SM00493 RPIT_01210 RPIT_01220 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_01235 SM00382 ATPases associated with a variety of cellular activities RPIT_01250 SM00919 Malic enzyme, NAD binding domain RPIT_01250 SM01274 RPIT_01250 RPIT_01285 SM00014 Acid phosphatase homologues RPIT_01290 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RPIT_01300 SM00382 ATPases associated with a variety of cellular activities RPIT_01315 SM00635 Bacterial Ig-like domain 2 RPIT_01320 SM00813 Alpha-L-arabinofuranosidase C-terminus RPIT_01325 SM00560 LamG-like jellyroll fold domain RPIT_01325 SM00635 Bacterial Ig-like domain 2 RPIT_01380 SM00478 endonuclease III RPIT_01380 SM00525 RPIT_01380 RPIT_01420 SM00487 DEAD-like helicases superfamily RPIT_01420 SM00490 helicase superfamily c-terminal domain RPIT_01450 SM00382 ATPases associated with a variety of cellular activities RPIT_01455 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RPIT_01455 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RPIT_01455 SM00493 RPIT_01455 RPIT_01510 SM00938 Nitrogen regulatory protein P-II RPIT_01520 SM00855 Phosphoglycerate mutase family RPIT_01565 SM00382 ATPases associated with a variety of cellular activities RPIT_01580 SM00905 Dihydroneopterin aldolase RPIT_01615 SM00382 ATPases associated with a variety of cellular activities RPIT_01615 SM01086 C-terminal, D2-small domain, of ClpB protein RPIT_01625 SM00382 ATPases associated with a variety of cellular activities RPIT_01645 SM00567 E-Z type HEAT repeats RPIT_01650 SM00422 helix_turn_helix, mercury resistance RPIT_01650 SM00567 E-Z type HEAT repeats RPIT_01655 SM00382 ATPases associated with a variety of cellular activities RPIT_01680 SM00859 Semialdehyde dehydrogenase, NAD binding domain RPIT_01690 SM01155 RPIT_01690 RPIT_01705 SM00855 Phosphoglycerate mutase family RPIT_01735 SM00822 RPIT_01735 RPIT_01755 SM00382 ATPases associated with a variety of cellular activities RPIT_01790 SM00862 Transcriptional regulatory protein, C terminal RPIT_01865 SM01120 RPIT_01865 RPIT_01875 SM00788 Adenylosuccinate synthetase RPIT_01905 SM01209 RPIT_01905 RPIT_01905 SM01210 RPIT_01905 RPIT_01930 SM00822 RPIT_01930 RPIT_01945 SM00998 Adenylosuccinate lyase C-terminus RPIT_01995 SM01211 RPIT_01995 RPIT_02070 SM00642 Alpha-amylase domain RPIT_02075 SM00354 helix_turn _helix lactose operon repressor RPIT_02115 SM00729 Elongator protein 3, MiaB family, Radical SAM RPIT_02130 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RPIT_02170 SM00852 Probable molybdopterin binding domain RPIT_02235 SM00530 Helix-turn-helix XRE-family like proteins RPIT_02295 SM00382 ATPases associated with a variety of cellular activities RPIT_02305 SM00382 ATPases associated with a variety of cellular activities RPIT_02345 SM00852 Probable molybdopterin binding domain RPIT_02350 SM00382 ATPases associated with a variety of cellular activities RPIT_02355 SM00382 ATPases associated with a variety of cellular activities RPIT_02400 SM00347 helix_turn_helix multiple antibiotic resistance protein RPIT_02435 SM00028 Tetratricopeptide repeats RPIT_02480 SM00287 Bacterial SH3 domain homologues RPIT_02515 SM00642 Alpha-amylase domain RPIT_02520 SM00642 Alpha-amylase domain RPIT_02530 SM00642 Alpha-amylase domain RPIT_02560 SM01120 RPIT_02560 RPIT_02580 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RPIT_02610 SM00382 ATPases associated with a variety of cellular activities RPIT_02655 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RPIT_02660 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RPIT_02660 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RPIT_02730 SM00487 DEAD-like helicases superfamily RPIT_02730 SM00490 helicase superfamily c-terminal domain RPIT_02820 SM00047 Lysozyme subfamily 2 RPIT_02835 SM00382 ATPases associated with a variety of cellular activities RPIT_02840 SM00382 ATPases associated with a variety of cellular activities RPIT_02855 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RPIT_02855 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RPIT_02860 SM00649 Ribosomal protein L11/L12 RPIT_02880 SM00855 Phosphoglycerate mutase family RPIT_02890 SM00382 ATPases associated with a variety of cellular activities RPIT_02900 SM00062 Bacterial periplasmic substrate-binding proteins RPIT_02920 SM00663 RNA polymerase I subunit A N-terminus RPIT_02930 SM00382 ATPases associated with a variety of cellular activities RPIT_02960 SM00838 Elongation factor G C-terminus RPIT_02960 SM00889 Elongation factor G, domain IV RPIT_03015 SM00487 DEAD-like helicases superfamily RPIT_03020 SM00479 RPIT_03020 RPIT_03025 SM00100 Cyclic nucleotide-monophosphate binding domain RPIT_03025 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_03030 SM01038 Beta galactosidase small chain RPIT_03035 SM01403 RPIT_03035 RPIT_03055 SM01382 RPIT_03055 RPIT_03055 SM01383 RPIT_03055 RPIT_03070 SM00322 K homology RNA-binding domain RPIT_03105 SM00450 Rhodanese Homology Domain RPIT_03105 SM00849 Metallo-beta-lactamase superfamily RPIT_03110 SM00450 Rhodanese Homology Domain RPIT_03135 SM00487 DEAD-like helicases superfamily RPIT_03135 SM00490 helicase superfamily c-terminal domain RPIT_03140 SM01374 RPIT_03140 RPIT_03145 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RPIT_03265 SM00420 helix_turn_helix, Deoxyribose operon repressor RPIT_03265 SM01134 RPIT_03265 RPIT_03295 SM00382 ATPases associated with a variety of cellular activities RPIT_03330 SM00829 Enoylreductase RPIT_03370 SM00662 RNA polymerases D RPIT_03395 SM00382 ATPases associated with a variety of cellular activities RPIT_03440 SM00838 Elongation factor G C-terminus RPIT_03440 SM00889 Elongation factor G, domain IV RPIT_03465 SM00955 RPIT_03465 RPIT_03480 SM00460 Transglutaminase/protease-like homologues RPIT_03485 SM00460 Transglutaminase/protease-like homologues RPIT_03500 SM01230 RPIT_03500 RPIT_03540 SM01230 RPIT_03540 RPIT_03555 SM00382 ATPases associated with a variety of cellular activities RPIT_03655 SM00382 ATPases associated with a variety of cellular activities RPIT_03690 SM00382 ATPases associated with a variety of cellular activities RPIT_03700 SM01240 RPIT_03700 RPIT_03765 SM00465 GIY-YIG type nucleases (URI domain) RPIT_03765 SM00479 RPIT_03765 RPIT_03780 SM00563 Phosphate acyltransferases RPIT_03790 SM00421 helix_turn_helix, Lux Regulon RPIT_03790 SM00448 cheY-homologous receiver domain RPIT_03810 SM00220 Serine/Threonine protein kinases, catalytic domain RPIT_03810 SM00740 RPIT_03810 RPIT_03870 SM00382 ATPases associated with a variety of cellular activities RPIT_03895 SM00984 UDP binding domain RPIT_03910 SM00382 ATPases associated with a variety of cellular activities RPIT_03950 SM00481 DNA polymerase alpha chain like domain RPIT_03965 SM00460 Transglutaminase/protease-like homologues RPIT_04045 SM00864 Tubulin/FtsZ family, GTPase domain RPIT_04045 SM00865 Tubulin/FtsZ family, C-terminal domain RPIT_04090 SM00448 cheY-homologous receiver domain RPIT_04090 SM01012 RPIT_04090 RPIT_04100 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RPIT_04100 SM00474 3'-5' exonuclease RPIT_04100 SM00475 5'-3' exonuclease RPIT_04100 SM00482 DNA polymerase A domain RPIT_04120 SM00316 Ribosomal protein S1-like RNA-binding domain RPIT_04155 SM00487 DEAD-like helicases superfamily RPIT_04155 SM00490 helicase superfamily c-terminal domain RPIT_04165 SM00382 ATPases associated with a variety of cellular activities RPIT_04175 SM00465 GIY-YIG type nucleases (URI domain) RPIT_04185 SM00382 ATPases associated with a variety of cellular activities RPIT_04210 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RPIT_04245 SM00382 ATPases associated with a variety of cellular activities RPIT_04285 SM00244 prohibitin homologues RPIT_04330 SM00382 ATPases associated with a variety of cellular activities RPIT_04335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RPIT_04355 SM00382 ATPases associated with a variety of cellular activities RPIT_04385 SM00421 helix_turn_helix, Lux Regulon RPIT_04385 SM00448 cheY-homologous receiver domain RPIT_04395 SM00382 ATPases associated with a variety of cellular activities RPIT_04405 SM00642 Alpha-amylase domain RPIT_04430 SM00822 RPIT_04430 RPIT_04440 SM00382 ATPases associated with a variety of cellular activities RPIT_04450 SM00244 prohibitin homologues RPIT_04475 SM00736 Dystroglycan-type cadherin-like domains. RPIT_04525 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RPIT_04580 SM01208 RPIT_04580 RPIT_04615 SM00904 Riboflavin kinase RPIT_04630 SM01387 RPIT_04630 RPIT_04640 SM00316 Ribosomal protein S1-like RNA-binding domain RPIT_04640 SM00322 K homology RNA-binding domain RPIT_04660 SM00849 Metallo-beta-lactamase superfamily RPIT_04680 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RPIT_04705 SM00855 Phosphoglycerate mutase family RPIT_04735 SM01004 Delta-aminolevulinic acid dehydratase RPIT_04830 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RPIT_04835 SM00849 Metallo-beta-lactamase superfamily RPIT_04865 SM00838 Elongation factor G C-terminus RPIT_04870 SM00487 DEAD-like helicases superfamily RPIT_04870 SM00490 helicase superfamily c-terminal domain RPIT_04870 SM00847 Helicase associated domain (HA2) Add an annotation RPIT_04880 SM00729 Elongator protein 3, MiaB family, Radical SAM RPIT_04890 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_04895 SM00382 ATPases associated with a variety of cellular activities RPIT_04910 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_04960 SM00849 Metallo-beta-lactamase superfamily RPIT_04970 SM00271 DnaJ molecular chaperone homology domain RPIT_05010 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_05010 SM01091 Transporter associated domain RPIT_05035 SM00917 LeuA allosteric (dimerisation) domain RPIT_05040 SM00487 DEAD-like helicases superfamily RPIT_05040 SM00490 helicase superfamily c-terminal domain RPIT_05070 SM00382 ATPases associated with a variety of cellular activities RPIT_05100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RPIT_05105 SM00400 zinc finger RPIT_05105 SM00493 RPIT_05105 RPIT_05105 SM00766 DNA primase DnaG DnaB-binding RPIT_05170 SM00327 von Willebrand factor (vWF) type A domain RPIT_05175 SM00327 von Willebrand factor (vWF) type A domain RPIT_05195 SM00825 Beta-ketoacyl synthase RPIT_05210 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RPIT_05235 SM00481 DNA polymerase alpha chain like domain RPIT_05290 SM00937 RPIT_05290 RPIT_05295 SM00382 ATPases associated with a variety of cellular activities RPIT_05330 SM00448 cheY-homologous receiver domain RPIT_05330 SM00862 Transcriptional regulatory protein, C terminal RPIT_05335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_05335 SM00387 Histidine kinase-like ATPases RPIT_05335 SM00388 His Kinase A (phosphoacceptor) domain RPIT_05340 SM00909 Sporulation and spore germination RPIT_05355 SM00957 SecA DEAD-like domain RPIT_05355 SM00958 SecA preprotein cross-linking domain RPIT_05385 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RPIT_05400 SM00481 DNA polymerase alpha chain like domain RPIT_05410 SM00487 DEAD-like helicases superfamily RPIT_05410 SM00490 helicase superfamily c-terminal domain RPIT_05420 SM00331 Sigma factor PP2C-like phosphatases RPIT_05420 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RPIT_05460 SM00387 Histidine kinase-like ATPases RPIT_05460 SM00433 TopoisomeraseII RPIT_05485 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_05485 SM00895 RPIT_05485 RPIT_05490 SM00947 Carbonic anhydrase RPIT_05495 SM00434 DNA Topoisomerase IV RPIT_05620 SM00861 Transketolase, pyrimidine binding domain RPIT_05625 SM00474 3'-5' exonuclease RPIT_05690 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RPIT_05730 SM00240 Forkhead associated domain RPIT_05735 SM00422 helix_turn_helix, mercury resistance RPIT_05745 SM00422 helix_turn_helix, mercury resistance RPIT_05875 SM00421 helix_turn_helix, Lux Regulon RPIT_05875 SM00448 cheY-homologous receiver domain RPIT_05885 SM00382 ATPases associated with a variety of cellular activities RPIT_05895 SM00530 Helix-turn-helix XRE-family like proteins RPIT_05960 SM00530 Helix-turn-helix XRE-family like proteins RPIT_05995 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RPIT_05995 SM00475 5'-3' exonuclease RPIT_06045 SM01022 RPIT_06045 RPIT_06085 SM00507 HNH nucleases RPIT_06090 SM00382 ATPases associated with a variety of cellular activities RPIT_06120 SM01018 B12 binding domain RPIT_06155 SM01409 RPIT_06155 RPIT_06160 SM00072 Guanylate kinase homologues. RPIT_06170 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RPIT_06180 SM00851 MGS-like domain RPIT_06180 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RPIT_06185 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RPIT_06195 SM00841 Elongation factor P, C-terminal RPIT_06195 SM01185 RPIT_06195 RPIT_06230 SM00732 Likely ribonuclease with RNase H fold. RPIT_06235 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RPIT_06250 SM00382 ATPases associated with a variety of cellular activities RPIT_06265 SM01058 CarD-like/TRCF domain RPIT_06290 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RPIT_06290 SM00954 Region found in RelA / SpoT proteins RPIT_06315 SM01323 RPIT_06315 RPIT_06320 SM00382 ATPases associated with a variety of cellular activities RPIT_06325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RPIT_06390 SM00481 DNA polymerase alpha chain like domain RPIT_06405 SM00382 ATPases associated with a variety of cellular activities RPIT_06505 SM00845 GatB domain RPIT_06545 SM00642 Alpha-amylase domain RPIT_06550 SM00642 Alpha-amylase domain RPIT_06560 SM00642 Alpha-amylase domain RPIT_06575 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_06580 SM00642 Alpha-amylase domain RPIT_06585 SM00642 Alpha-amylase domain RPIT_06665 SM00382 ATPases associated with a variety of cellular activities RPIT_06725 SM00937 RPIT_06725 RPIT_06735 SM00357 Cold shock protein domain RPIT_06735 SM00382 ATPases associated with a variety of cellular activities RPIT_06735 SM00959 Rho termination factor, N-terminal domain RPIT_06770 SM00861 Transketolase, pyrimidine binding domain RPIT_06835 SM00382 ATPases associated with a variety of cellular activities RPIT_06840 SM00382 ATPases associated with a variety of cellular activities RPIT_06860 SM00354 helix_turn _helix lactose operon repressor RPIT_06915 SM00341 Helicase and RNase D C-terminal RPIT_06930 SM00382 ATPases associated with a variety of cellular activities RPIT_06970 SM00487 DEAD-like helicases superfamily RPIT_06970 SM00490 helicase superfamily c-terminal domain RPIT_06970 SM00847 Helicase associated domain (HA2) Add an annotation RPIT_07010 SM00450 Rhodanese Homology Domain RPIT_07015 SM00421 helix_turn_helix, Lux Regulon RPIT_07040 SM00487 DEAD-like helicases superfamily RPIT_07040 SM00491 RPIT_07040 RPIT_07075 SM00322 K homology RNA-binding domain RPIT_07075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RPIT_07085 SM00382 ATPases associated with a variety of cellular activities RPIT_07095 SM00420 helix_turn_helix, Deoxyribose operon repressor RPIT_07095 SM01134 RPIT_07095 RPIT_07100 SM00530 Helix-turn-helix XRE-family like proteins RPIT_07115 SM00729 Elongator protein 3, MiaB family, Radical SAM RPIT_07120 SM00382 ATPases associated with a variety of cellular activities RPIT_07120 SM00843 RPIT_07120 RPIT_07135 SM00563 Phosphate acyltransferases RPIT_07190 SM00871 Bacterial transcription activator, effector binding domain RPIT_07265 SM00448 cheY-homologous receiver domain RPIT_07265 SM00862 Transcriptional regulatory protein, C terminal RPIT_07270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_07270 SM00387 Histidine kinase-like ATPases RPIT_07270 SM00388 His Kinase A (phosphoacceptor) domain RPIT_07305 SM00746 metallochaperone-like domain RPIT_07335 SM00606 Cellulose Binding Domain Type IV RPIT_07440 SM00487 DEAD-like helicases superfamily RPIT_07440 SM00490 helicase superfamily c-terminal domain RPIT_07470 SM00642 Alpha-amylase domain RPIT_07505 SM00327 von Willebrand factor (vWF) type A domain RPIT_07595 SM00487 DEAD-like helicases superfamily RPIT_07595 SM00490 helicase superfamily c-terminal domain RPIT_07625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RPIT_07675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RPIT_07685 SM00382 ATPases associated with a variety of cellular activities RPIT_07730 SM00530 Helix-turn-helix XRE-family like proteins RPIT_07770 SM00829 Enoylreductase RPIT_07775 SM00986 Uracil DNA glycosylase superfamily RPIT_07775 SM00987 UreE urease accessory protein, C-terminal domain RPIT_07795 SM00421 helix_turn_helix, Lux Regulon RPIT_07835 SM00327 von Willebrand factor (vWF) type A domain RPIT_07840 SM00220 Serine/Threonine protein kinases, catalytic domain RPIT_07865 SM00327 von Willebrand factor (vWF) type A domain RPIT_07870 SM00220 Serine/Threonine protein kinases, catalytic domain RPIT_07910 SM00346 helix_turn_helix isocitrate lyase regulation RPIT_07940 SM00917 LeuA allosteric (dimerisation) domain RPIT_07945 SM01329 RPIT_07945 RPIT_07990 SM00487 DEAD-like helicases superfamily RPIT_07990 SM00490 helicase superfamily c-terminal domain RPIT_07990 SM01142 RPIT_07990 RPIT_07995 SM00046 Diacylglycerol kinase catalytic domain (presumed) RPIT_08030 SM00363 S4 RNA-binding domain RPIT_08100 SM00363 S4 RNA-binding domain RPIT_08180 SM00854 Bacterial capsule synthesis protein PGA_cap RPIT_08220 SM00859 Semialdehyde dehydrogenase, NAD binding domain RPIT_08255 SM00873 B3/4 domain RPIT_08255 SM00874 tRNA synthetase B5 domain RPIT_08255 SM00896 Ferredoxin-fold anticodon binding domain RPIT_08265 SM00967 RNA 2'-O ribose methyltransferase substrate binding RPIT_08325 SM00855 Phosphoglycerate mutase family RPIT_08435 SM00448 cheY-homologous receiver domain RPIT_08435 SM00862 Transcriptional regulatory protein, C terminal RPIT_08440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_08440 SM00387 Histidine kinase-like ATPases RPIT_08440 SM00388 His Kinase A (phosphoacceptor) domain RPIT_08460 SM00382 ATPases associated with a variety of cellular activities RPIT_08515 SM00382 ATPases associated with a variety of cellular activities RPIT_08525 SM00369 Leucine-rich repeats, typical (most populated) subfamily RPIT_08640 SM00421 helix_turn_helix, Lux Regulon RPIT_08640 SM00448 cheY-homologous receiver domain RPIT_08650 SM00382 ATPases associated with a variety of cellular activities RPIT_08655 SM00421 helix_turn_helix, Lux Regulon RPIT_08660 SM00382 ATPases associated with a variety of cellular activities RPIT_08665 SM00382 ATPases associated with a variety of cellular activities RPIT_08665 SM00962 SRP54-type protein, GTPase domain RPIT_08665 SM00963 SRP54-type protein, helical bundle domain RPIT_08670 SM00968 SMC proteins Flexible Hinge Domain RPIT_08680 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_08680 SM01232 RPIT_08680 RPIT_08685 SM00358 Double-stranded RNA binding motif RPIT_08685 SM00535 Ribonuclease III family RPIT_08710 SM00487 DEAD-like helicases superfamily RPIT_08710 SM00490 helicase superfamily c-terminal domain RPIT_08720 SM00421 helix_turn_helix, Lux Regulon RPIT_08730 SM00316 Ribosomal protein S1-like RNA-binding domain RPIT_08760 SM00729 Elongator protein 3, MiaB family, Radical SAM RPIT_08765 SM00562 RPIT_08765 RPIT_08790 SM00245 tail specific protease RPIT_08800 SM00382 ATPases associated with a variety of cellular activities RPIT_08800 SM00994 ClpX C4-type zinc finger RPIT_08800 SM01086 C-terminal, D2-small domain, of ClpB protein RPIT_08910 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_08910 SM01232 RPIT_08910 RPIT_08925 SM00292 breast cancer carboxy-terminal domain RPIT_08925 SM00532 Ligase N family RPIT_08955 SM01350 RPIT_08955 RPIT_08960 SM00487 DEAD-like helicases superfamily RPIT_08960 SM00490 helicase superfamily c-terminal domain RPIT_08965 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RPIT_08965 SM01232 RPIT_08965 RPIT_08970 SM00354 helix_turn _helix lactose operon repressor RPIT_08980 SM01007 Class II Aldolase and Adducin N-terminal domain RPIT_08995 SM00347 helix_turn_helix multiple antibiotic resistance protein RPIT_09020 SM00382 ATPases associated with a variety of cellular activities RPIT_09060 SM00479 RPIT_09060 RPIT_09140 SM00530 Helix-turn-helix XRE-family like proteins RPIT_09205 SM00642 Alpha-amylase domain RPIT_09555 SM00996 S-adenosyl-L-homocysteine hydrolase RPIT_09555 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RPIT_09635 SM01001 AIR carboxylase RPIT_09685 SM00878 Biotin carboxylase C-terminal domain RPIT_09740 SM00421 helix_turn_helix, Lux Regulon RPIT_09740 SM00448 cheY-homologous receiver domain RPIT_09745 SM00387 Histidine kinase-like ATPases RPIT_09780 SM00382 ATPases associated with a variety of cellular activities RPIT_09800 SM01091 Transporter associated domain RPIT_09825 SM00756 RPIT_09825 RPIT_09845 SM00798 AICARFT/IMPCHase bienzyme RPIT_09845 SM00851 MGS-like domain RPIT_09865 SM00881 CoA binding domain RPIT_09885 SM00155 Phospholipase D. Active site motifs. RPIT_09900 SM00421 helix_turn_helix, Lux Regulon RPIT_09900 SM00448 cheY-homologous receiver domain RPIT_09945 SM00830 Chorismate mutase type II RPIT_09950 SM01240 RPIT_09950 RPIT_09955 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_09955 SM01240 RPIT_09955 RPIT_09960 SM00320 WD40 repeats RPIT_09960 SM00530 Helix-turn-helix XRE-family like proteins RPIT_09970 SM00883 Chaperonin 10 Kd subunit RPIT_09975 SM00729 Elongator protein 3, MiaB family, Radical SAM RPIT_09975 SM00876 Biotin and Thiamin Synthesis associated domain RPIT_09980 SM01266 RPIT_09980 RPIT_09990 SM00796 Allophanate hydrolase subunit 1 RPIT_09990 SM00797 Allophanate hydrolase subunit 2 RPIT_10055 SM00487 DEAD-like helicases superfamily RPIT_10055 SM00490 helicase superfamily c-terminal domain RPIT_10100 SM01011 Aminopeptidase P, N-terminal domain RPIT_10120 SM00924 MgtE intracellular N domain RPIT_10155 SM01130 RPIT_10155 RPIT_10195 SM00460 Transglutaminase/protease-like homologues RPIT_10210 SM00450 Rhodanese Homology Domain RPIT_10225 SM00382 ATPases associated with a variety of cellular activities RPIT_10275 SM00861 Transketolase, pyrimidine binding domain RPIT_10300 SM00849 Metallo-beta-lactamase superfamily RPIT_10325 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_10330 SM00450 Rhodanese Homology Domain RPIT_10335 SM00971 Serine acetyltransferase, N-terminal RPIT_10345 SM00382 ATPases associated with a variety of cellular activities RPIT_10380 SM00986 Uracil DNA glycosylase superfamily RPIT_10380 SM00987 UreE urease accessory protein, C-terminal domain RPIT_10395 SM00507 HNH nucleases RPIT_10405 SM00344 helix_turn_helix ASNC type RPIT_10420 SM00530 Helix-turn-helix XRE-family like proteins RPIT_10440 SM00530 Helix-turn-helix XRE-family like proteins RPIT_10450 SM00448 cheY-homologous receiver domain RPIT_10485 SM00382 ATPases associated with a variety of cellular activities RPIT_10545 SM00670 Large family of predicted nucleotide-binding domains RPIT_10585 SM00986 Uracil DNA glycosylase superfamily RPIT_10585 SM00987 UreE urease accessory protein, C-terminal domain RPIT_10640 SM00849 Metallo-beta-lactamase superfamily RPIT_10640 SM01027 Beta-Casp domain RPIT_10655 SM00244 prohibitin homologues RPIT_10705 SM01192 RPIT_10705 RPIT_10705 SM01193 RPIT_10705 RPIT_10720 SM00487 DEAD-like helicases superfamily RPIT_10720 SM00490 helicase superfamily c-terminal domain RPIT_10720 SM00982 RPIT_10720 RPIT_10720 SM01058 CarD-like/TRCF domain RPIT_10740 SM01400 RPIT_10740 RPIT_10750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_10750 SM00387 Histidine kinase-like ATPases RPIT_10750 SM00388 His Kinase A (phosphoacceptor) domain RPIT_10755 SM00448 cheY-homologous receiver domain RPIT_10755 SM00862 Transcriptional regulatory protein, C terminal RPIT_10765 SM00382 ATPases associated with a variety of cellular activities RPIT_10830 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RPIT_10865 SM00487 DEAD-like helicases superfamily RPIT_10900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RPIT_10940 SM00347 helix_turn_helix multiple antibiotic resistance protein RPIT_10950 SM00650 Ribosomal RNA adenine dimethylases RPIT_10980 SM00382 ATPases associated with a variety of cellular activities RPIT_11005 SM00903 Flavin reductase like domain RPIT_11025 SM00852 Probable molybdopterin binding domain RPIT_11035 SM00834 Putative regulatory protein RPIT_11040 SM00858 RPIT_11040 RPIT_11095 SM00890 Domain of unknown function RPIT_11115 SM00529 Helix-turn-helix diphteria tox regulatory element RPIT_11140 SM00878 Biotin carboxylase C-terminal domain RPIT_11165 SM00357 Cold shock protein domain RPIT_11265 SM00840 RPIT_11265 RPIT_11270 SM00967 RNA 2'-O ribose methyltransferase substrate binding RPIT_11300 SM01058 CarD-like/TRCF domain RPIT_11310 SM00448 cheY-homologous receiver domain RPIT_11310 SM00862 Transcriptional regulatory protein, C terminal RPIT_11315 SM00387 Histidine kinase-like ATPases RPIT_11315 SM00388 His Kinase A (phosphoacceptor) domain RPIT_11325 SM00855 Phosphoglycerate mutase family RPIT_11330 SM00855 Phosphoglycerate mutase family RPIT_11340 SM00642 Alpha-amylase domain RPIT_11385 SM01217 RPIT_11385 RPIT_11405 SM00354 helix_turn _helix lactose operon repressor RPIT_11430 SM00861 Transketolase, pyrimidine binding domain RPIT_11445 SM00420 helix_turn_helix, Deoxyribose operon repressor RPIT_11445 SM01134 RPIT_11445 RPIT_11480 SM00354 helix_turn _helix lactose operon repressor RPIT_11505 SM00382 ATPases associated with a variety of cellular activities RPIT_11550 SM00421 helix_turn_helix, Lux Regulon RPIT_11570 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_11575 SM00116 Domain in cystathionine beta-synthase and other proteins. RPIT_11575 SM01091 Transporter associated domain RPIT_11585 SM00867 YceI-like domain RPIT_11630 SM00640 Glycosyl hydrolases family 32 RPIT_11650 SM00354 helix_turn _helix lactose operon repressor RPIT_11690 SM00354 helix_turn _helix lactose operon repressor RPIT_11720 SM00382 ATPases associated with a variety of cellular activities RPIT_11740 SM00382 ATPases associated with a variety of cellular activities RPIT_11800 SM00382 ATPases associated with a variety of cellular activities RPIT_11800 SM01086 C-terminal, D2-small domain, of ClpB protein RPIT_11895 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RPIT_11895 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RPIT_11915 SM00422 helix_turn_helix, mercury resistance RPIT_11920 SM00271 DnaJ molecular chaperone homology domain RPIT_11940 SM00642 Alpha-amylase domain RPIT_11985 SM00382 ATPases associated with a variety of cellular activities RPIT_11995 SM00382 ATPases associated with a variety of cellular activities RPIT_12000 SM00354 helix_turn _helix lactose operon repressor RPIT_12005 SM00640 Glycosyl hydrolases family 32 RPIT_12035 SM01154 RPIT_12035 RPIT_12140 SM00448 cheY-homologous receiver domain RPIT_12140 SM00862 Transcriptional regulatory protein, C terminal RPIT_12145 SM00387 Histidine kinase-like ATPases RPIT_12145 SM00388 His Kinase A (phosphoacceptor) domain RPIT_12170 SM01133 RPIT_12170 RPIT_12175 SM00382 ATPases associated with a variety of cellular activities RPIT_12245 SM00891 ERCC4 domain RPIT_12345 SM00287 Bacterial SH3 domain homologues RPIT_12375 SM01117 RPIT_12375 RPIT_12400 SM01130 RPIT_12400 RPIT_12405 SM00382 ATPases associated with a variety of cellular activities RPIT_12410 SM00382 ATPases associated with a variety of cellular activities RPIT_12425 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_12425 SM00895 RPIT_12425 RPIT_12440 SM00450 Rhodanese Homology Domain RPIT_12450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_12450 SM00387 Histidine kinase-like ATPases RPIT_12450 SM00388 His Kinase A (phosphoacceptor) domain RPIT_12455 SM00448 cheY-homologous receiver domain RPIT_12455 SM00862 Transcriptional regulatory protein, C terminal RPIT_12490 SM00382 ATPases associated with a variety of cellular activities RPIT_12520 SM00855 Phosphoglycerate mutase family RPIT_12540 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_12540 SM00866 RPIT_12540 RPIT_12550 SM00632 RPIT_12550 RPIT_12550 SM00642 Alpha-amylase domain RPIT_12575 SM00382 ATPases associated with a variety of cellular activities RPIT_12605 SM00382 ATPases associated with a variety of cellular activities RPIT_12615 SM00421 helix_turn_helix, Lux Regulon RPIT_12615 SM00448 cheY-homologous receiver domain RPIT_12680 SM00831 Cation transporter/ATPase, N-terminus RPIT_12685 SM00240 Forkhead associated domain RPIT_12690 SM00240 Forkhead associated domain RPIT_12695 SM00331 Sigma factor PP2C-like phosphatases RPIT_12695 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RPIT_12710 SM00220 Serine/Threonine protein kinases, catalytic domain RPIT_12710 SM00740 RPIT_12710 RPIT_12760 SM00354 helix_turn _helix lactose operon repressor RPIT_12770 SM00886 Stress responsive A/B Barrel Domain RPIT_12775 SM00530 Helix-turn-helix XRE-family like proteins RPIT_12815 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RPIT_12835 SM00382 ATPases associated with a variety of cellular activities RPIT_12850 SM00354 helix_turn _helix lactose operon repressor RPIT_12890 SM00382 ATPases associated with a variety of cellular activities RPIT_12895 SM00382 ATPases associated with a variety of cellular activities RPIT_12930 SM00382 ATPases associated with a variety of cellular activities RPIT_12965 SM00382 ATPases associated with a variety of cellular activities RPIT_12970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RPIT_12985 SM00226 Low molecular weight phosphatase family RPIT_12990 SM00226 Low molecular weight phosphatase family RPIT_13000 SM00478 endonuclease III RPIT_13000 SM00525 RPIT_13000 RPIT_13030 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RPIT_13030 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RPIT_13110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RPIT_13120 SM00220 Serine/Threonine protein kinases, catalytic domain RPIT_13170 SM00849 Metallo-beta-lactamase superfamily RPIT_13175 SM00633 Glycosyl hydrolase family 10 RPIT_13205 SM00422 helix_turn_helix, mercury resistance RPIT_13250 SM00530 Helix-turn-helix XRE-family like proteins RPIT_13260 SM00354 helix_turn _helix lactose operon repressor RPIT_13285 SM00382 ATPases associated with a variety of cellular activities RPIT_13290 SM00345 helix_turn_helix gluconate operon transcriptional repressor RPIT_13290 SM00866 RPIT_13290 RPIT_13305 SM00354 helix_turn _helix lactose operon repressor RPIT_13365 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RPIT_13405 SM00813 Alpha-L-arabinofuranosidase C-terminus RPIT_13565 SM00470 ParB-like nuclease domain RPIT_13580 SM00393 Putative single-stranded nucleic acids-binding domain RPIT_13590 SM01234 RPIT_13590 RPIT_13605 SM00382 ATPases associated with a variety of cellular activities RPIT_13605 SM00760 Bacterial dnaA protein helix-turn-helix domain RPIT_13620 SM00450 Rhodanese Homology Domain RPIT_13625 SM00382 ATPases associated with a variety of cellular activities RPIT_13635 SM00480 DNA polymerase III beta subunit RPIT_13665 SM00387 Histidine kinase-like ATPases RPIT_13665 SM00433 TopoisomeraseII RPIT_13670 SM00434 DNA Topoisomerase IV RPIT_13725 SM00899 RPIT_13725 RPIT_13870 SM00861 Transketolase, pyrimidine binding domain RPIT_13980 SM00226 Low molecular weight phosphatase family RPIT_14025 SM00382 ATPases associated with a variety of cellular activities RPIT_14040 SM00984 UDP binding domain RPIT_14055 SM00226 Low molecular weight phosphatase family RPIT_14105 SM00448 cheY-homologous receiver domain RPIT_14105 SM00862 Transcriptional regulatory protein, C terminal RPIT_14110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RPIT_14110 SM00387 Histidine kinase-like ATPases RPIT_14110 SM00388 His Kinase A (phosphoacceptor) domain RPIT_14115 SM00878 Biotin carboxylase C-terminal domain RPIT_14135 SM00100 Cyclic nucleotide-monophosphate binding domain RPIT_14135 SM00419 helix_turn_helix, cAMP Regulatory protein RPIT_14150 SM00382 ATPases associated with a variety of cellular activities RPIT_14180 SM00729 Elongator protein 3, MiaB family, Radical SAM RPIT_14185 SM01400 RPIT_14185 RPIT_14205 SM00829 Enoylreductase RPIT_14220 SM00858 RPIT_14220 RPIT_14250 SM00257 Lysin motif RPIT_14290 SM00244 prohibitin homologues RPIT_14320 SM00642 Alpha-amylase domain RPIT_14400 SM00563 Phosphate acyltransferases RPIT_14405 SM00822 RPIT_14405 RPIT_14475 SM00518 AP endonuclease family 2 RPIT_14490 SM00450 Rhodanese Homology Domain RPIT_14545 SM00091 PAS domain RPIT_14595 SM00857 Resolvase, N terminal domain RPIT_14645 SM00857 Resolvase, N terminal domain RPIT_14690 SM00633 Glycosyl hydrolase family 10 RPIT_14715 SM00382 ATPases associated with a variety of cellular activities RPIT_14720 SM00382 ATPases associated with a variety of cellular activities RPIT_14750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RPIT_14785 SM00422 helix_turn_helix, mercury resistance RPIT_14800 SM00363 S4 RNA-binding domain