locus-tag class description CFI11_00005 PF02545 Maf-like protein CFI11_00010 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CFI11_00010 PF08501 Shikimate dehydrogenase substrate binding domain CFI11_00010 PF01488 Shikimate / quinate 5-dehydrogenase CFI11_00015 PF01121 Dephospho-CoA kinase CFI11_00020 PF00929 Exonuclease CFI11_00025 PF02556 Preprotein translocase subunit SecB CFI11_00030 PF04186 FxsA cytoplasmic membrane protein CFI11_00060 PF07724 AAA domain (Cdc48 subfamily) CFI11_00060 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_00065 PF00227 Proteasome subunit CFI11_00075 PF00085 Thioredoxin CFI11_00080 PF00580 UvrD/REP helicase N-terminal domain CFI11_00080 PF13361 UvrD-like helicase C-terminal domain CFI11_00080 PF12705 PD-(D/E)XK nuclease superfamily CFI11_00090 PF12804 MobA-like NTP transferase domain CFI11_00095 PF01636 Phosphotransferase enzyme family CFI11_00100 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CFI11_00110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_00110 PF00512 His Kinase A (phospho-acceptor) domain CFI11_00115 PF02630 SCO1/SenC CFI11_00120 PF00072 Response regulator receiver domain CFI11_00130 PF01966 HD domain CFI11_00135 PF00107 Zinc-binding dehydrogenase CFI11_00135 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_00145 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CFI11_00145 PF05221 S-adenosyl-L-homocysteine hydrolase CFI11_00175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CFI11_00175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CFI11_00180 PF00814 Glycoprotease family CFI11_00210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_00210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_00240 PF00579 tRNA synthetases class I (W and Y) CFI11_00270 PF00005 ABC transporter CFI11_00280 PF02632 BioY family CFI11_00285 PF00501 AMP-binding enzyme CFI11_00285 PF13193 AMP-binding enzyme C-terminal domain CFI11_00295 PF12832 MFS_1 like family CFI11_00300 PF13193 AMP-binding enzyme C-terminal domain CFI11_00300 PF00501 AMP-binding enzyme CFI11_00305 PF00106 short chain dehydrogenase CFI11_00350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFI11_00350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFI11_00365 PF13193 AMP-binding enzyme C-terminal domain CFI11_00365 PF00501 AMP-binding enzyme CFI11_00375 PF13193 AMP-binding enzyme C-terminal domain CFI11_00375 PF00501 AMP-binding enzyme CFI11_00380 PF00067 Cytochrome P450 CFI11_00385 PF13193 AMP-binding enzyme C-terminal domain CFI11_00385 PF00501 AMP-binding enzyme CFI11_00390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFI11_00395 PF00005 ABC transporter CFI11_00415 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_00415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_00415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_00420 PF01648 4'-phosphopantetheinyl transferase superfamily CFI11_00425 PF12833 Helix-turn-helix domain CFI11_00430 PF02119 Flagellar P-ring protein CFI11_00445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFI11_00445 PF00460 Flagella basal body rod protein CFI11_00445 PF07559 Flagellar basal body protein FlaE CFI11_00450 PF13677 Membrane MotB of proton-channel complex MotA/MotB CFI11_00450 PF00691 OmpA family CFI11_00455 PF00813 FliP family CFI11_00460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFI11_00470 PF08345 Flagellar M-ring protein C-terminal CFI11_00470 PF01514 Secretory protein of YscJ/FliF family CFI11_00490 PF01618 MotA/TolQ/ExbB proton channel family CFI11_00505 PF00771 FHIPEP family CFI11_00515 PF01312 FlhB HrpN YscU SpaS Family CFI11_00530 PF02107 Flagellar L-ring protein CFI11_00540 PF00460 Flagella basal body rod protein CFI11_00540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFI11_00545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFI11_00545 PF00460 Flagella basal body rod protein CFI11_00550 PF01313 Bacterial export proteins, family 3 CFI11_00555 PF02049 Flagellar hook-basal body complex protein FliE CFI11_00560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFI11_00570 PF18269 T3SS EscN ATPase C-terminal domain CFI11_00570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFI11_00570 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFI11_00580 PF07378 Flagellar protein FlbT CFI11_00590 PF00669 Bacterial flagellin N-terminal helical region CFI11_00590 PF00700 Bacterial flagellin C-terminal helical region CFI11_00610 PF13860 FlgD Ig-like domain CFI11_00610 PF03963 Flagellar hook capping protein - N-terminal region CFI11_00610 PF13861 FlgD Tudor-like domain CFI11_00615 PF01266 FAD dependent oxidoreductase CFI11_00620 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_00625 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_00630 PF08402 TOBE domain CFI11_00630 PF00005 ABC transporter CFI11_00635 PF13416 Bacterial extracellular solute-binding protein CFI11_00640 PF00392 Bacterial regulatory proteins, gntR family CFI11_00640 PF07729 FCD domain CFI11_00645 PF00202 Aminotransferase class-III CFI11_00650 PF00005 ABC transporter CFI11_00650 PF08402 TOBE domain CFI11_00660 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_00665 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_00675 PF13406 Transglycosylase SLT domain CFI11_00680 PF13280 WYL domain CFI11_00680 PF08279 HTH domain CFI11_00700 PF00743 Flavin-binding monooxygenase-like CFI11_00705 PF00685 Sulfotransferase domain CFI11_00725 PF01063 Amino-transferase class IV CFI11_00730 PF12802 MarR family CFI11_00735 PF00072 Response regulator receiver domain CFI11_00735 PF00486 Transcriptional regulatory protein, C terminal CFI11_00740 PF00850 Histone deacetylase domain CFI11_00745 PF02609 Exonuclease VII small subunit CFI11_00750 PF00348 Polyprenyl synthetase CFI11_00755 PF02779 Transketolase, pyrimidine binding domain CFI11_00755 PF02780 Transketolase, C-terminal domain CFI11_00755 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CFI11_00775 PF05138 Phenylacetic acid catabolic protein CFI11_00780 PF06243 Phenylacetic acid degradation B CFI11_00785 PF05138 Phenylacetic acid catabolic protein CFI11_00790 PF01883 Iron-sulfur cluster assembly protein CFI11_00800 PF00175 Oxidoreductase NAD-binding domain CFI11_00800 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_00800 PF00970 Oxidoreductase FAD-binding domain CFI11_00810 PF00378 Enoyl-CoA hydratase/isomerase CFI11_00820 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_00820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_00820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_00825 PF00596 Class II Aldolase and Adducin N-terminal domain CFI11_00825 PF01008 Initiation factor 2 subunit family CFI11_00840 PF03960 ArsC family CFI11_00845 PF01979 Amidohydrolase family CFI11_00845 PF13382 Adenine deaminase C-terminal domain CFI11_00850 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CFI11_00850 PF01048 Phosphorylase superfamily CFI11_00875 PF12833 Helix-turn-helix domain CFI11_00875 PF01965 DJ-1/PfpI family CFI11_00890 PF00005 ABC transporter CFI11_00890 PF00664 ABC transporter transmembrane region CFI11_00895 PF00255 Glutathione peroxidase CFI11_00900 PF01641 SelR domain CFI11_00905 PF01625 Peptide methionine sulfoxide reductase CFI11_00915 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CFI11_00915 PF12557 Cob(I)alamin adenosyltransferase N terminal CFI11_00920 PF00892 EamA-like transporter family CFI11_00945 PF00266 Aminotransferase class-V CFI11_00950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFI11_00950 PF01842 ACT domain CFI11_00950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFI11_00955 PF00149 Calcineurin-like phosphoesterase CFI11_00960 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_00965 PF00107 Zinc-binding dehydrogenase CFI11_00965 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_00970 PF00155 Aminotransferase class I and II CFI11_00975 PF07883 Cupin domain CFI11_00975 PF01381 Helix-turn-helix CFI11_00980 PF00108 Thiolase, N-terminal domain CFI11_00980 PF02803 Thiolase, C-terminal domain CFI11_00985 PF03109 ABC1 family CFI11_00990 PF01209 ubiE/COQ5 methyltransferase family CFI11_00995 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CFI11_00995 PF06827 Zinc finger found in FPG and IleRS CFI11_00995 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CFI11_01000 PF00378 Enoyl-CoA hydratase/isomerase CFI11_01005 PF01649 Ribosomal protein S20 CFI11_01010 PF11638 DnaA N-terminal domain CFI11_01010 PF08299 Bacterial dnaA protein helix-turn-helix CFI11_01010 PF00308 Bacterial dnaA protein CFI11_01015 PF00712 DNA polymerase III beta subunit, N-terminal domain CFI11_01015 PF02768 DNA polymerase III beta subunit, C-terminal domain CFI11_01015 PF02767 DNA polymerase III beta subunit, central domain CFI11_01020 PF02463 RecF/RecN/SMC N terminal domain CFI11_01025 PF01751 Toprim domain CFI11_01025 PF00204 DNA gyrase B CFI11_01025 PF00986 DNA gyrase B subunit, carboxyl terminus CFI11_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_01030 PF00535 Glycosyl transferase family 2 CFI11_01040 PF01370 NAD dependent epimerase/dehydratase family CFI11_01045 PF08421 Putative zinc binding domain CFI11_01045 PF08484 C-methyltransferase C-terminal domain CFI11_01050 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CFI11_01055 PF16363 GDP-mannose 4,6 dehydratase CFI11_01060 PF00483 Nucleotidyl transferase CFI11_01075 PF00857 Isochorismatase family CFI11_01080 PF00072 Response regulator receiver domain CFI11_01080 PF09308 LuxQ, periplasmic CFI11_01080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_01080 PF00512 His Kinase A (phospho-acceptor) domain CFI11_01085 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CFI11_01085 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CFI11_01090 PF00472 RF-1 domain CFI11_01095 PF02592 Putative vitamin uptake transporter CFI11_01105 PF03411 Penicillin-insensitive murein endopeptidase CFI11_01125 PF16124 RecQ zinc-binding CFI11_01125 PF00570 HRDC domain CFI11_01125 PF09382 RQC domain CFI11_01125 PF00271 Helicase conserved C-terminal domain CFI11_01125 PF00270 DEAD/DEAH box helicase CFI11_01130 PF03883 Peroxide stress protein YaaA CFI11_01135 PF00072 Response regulator receiver domain CFI11_01135 PF00672 HAMP domain CFI11_01135 PF00512 His Kinase A (phospho-acceptor) domain CFI11_01135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_01135 PF01627 Hpt domain CFI11_01135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CFI11_01140 PF07678 A-macroglobulin TED domain CFI11_01140 PF17962 Bacterial macroglobulin domain 6 CFI11_01140 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CFI11_01140 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CFI11_01140 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CFI11_01140 PF07703 Alpha-2-macroglobulin bait region domain CFI11_01140 PF01835 MG2 domain CFI11_01140 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CFI11_01140 PF00207 Alpha-2-macroglobulin family CFI11_01145 PF06832 Penicillin-Binding Protein C-terminus Family CFI11_01145 PF00912 Transglycosylase CFI11_01145 PF00905 Penicillin binding protein transpeptidase domain CFI11_01175 PF07726 ATPase family associated with various cellular activities (AAA) CFI11_01175 PF17863 AAA lid domain CFI11_01205 PF01367 5'-3' exonuclease, C-terminal SAM fold CFI11_01205 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CFI11_01205 PF00476 DNA polymerase family A CFI11_01205 PF01612 3'-5' exonuclease CFI11_01220 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_01235 PF00005 ABC transporter CFI11_01245 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CFI11_01245 PF01676 Metalloenzyme superfamily CFI11_01255 PF03572 Peptidase family S41 CFI11_01255 PF13180 PDZ domain CFI11_01265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_01270 PF02685 Glucokinase CFI11_01275 PF01081 KDPG and KHG aldolase CFI11_01280 PF00920 Dehydratase family CFI11_01300 PF00920 Dehydratase family CFI11_01305 PF00005 ABC transporter CFI11_01305 PF03412 Peptidase C39 family CFI11_01305 PF00664 ABC transporter transmembrane region CFI11_01310 PF02517 CPBP intramembrane metalloprotease CFI11_01315 PF17848 Acetyl-coA carboxylase zinc finger domain CFI11_01315 PF01039 Carboxyl transferase domain CFI11_01320 PF02875 Mur ligase family, glutamate ligase domain CFI11_01320 PF08245 Mur ligase middle domain CFI11_01325 PF03969 AFG1-like ATPase CFI11_01335 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFI11_01345 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CFI11_01350 PF00756 Putative esterase CFI11_01355 PF03547 Membrane transport protein CFI11_01365 PF00440 Bacterial regulatory proteins, tetR family CFI11_01365 PF18665 Tetracyclin repressor-like, C-terminal domain CFI11_01375 PF00107 Zinc-binding dehydrogenase CFI11_01375 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_01380 PF07690 Major Facilitator Superfamily CFI11_01385 PF01336 OB-fold nucleic acid binding domain CFI11_01385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFI11_01385 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFI11_01385 PF02811 PHP domain CFI11_01385 PF14579 Helix-hairpin-helix motif CFI11_01415 PF00108 Thiolase, N-terminal domain CFI11_01415 PF02803 Thiolase, C-terminal domain CFI11_01420 PF03061 Thioesterase superfamily CFI11_01425 PF01575 MaoC like domain CFI11_01425 PF00171 Aldehyde dehydrogenase family CFI11_01430 PF07848 PaaX-like protein CFI11_01430 PF08223 PaaX-like protein C-terminal domain CFI11_01435 PF13581 Histidine kinase-like ATPase domain CFI11_01460 PF01799 [2Fe-2S] binding domain CFI11_01460 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_01465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_01465 PF03466 LysR substrate binding domain CFI11_01480 PF03466 LysR substrate binding domain CFI11_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_01485 PF00583 Acetyltransferase (GNAT) family CFI11_01490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFI11_01490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFI11_01495 PF13193 AMP-binding enzyme C-terminal domain CFI11_01495 PF00668 Condensation domain CFI11_01495 PF07993 Male sterility protein CFI11_01495 PF00550 Phosphopantetheine attachment site CFI11_01495 PF00501 AMP-binding enzyme CFI11_01505 PF06339 Ectoine synthase CFI11_01510 PF00202 Aminotransferase class-III CFI11_01515 PF00696 Amino acid kinase family CFI11_01515 PF13840 ACT domain CFI11_01520 PF17645 Arylmalonate decarboxylase CFI11_01540 PF07690 Major Facilitator Superfamily CFI11_01555 PF00877 NlpC/P60 family CFI11_01560 PF02789 Cytosol aminopeptidase family, N-terminal domain CFI11_01560 PF00883 Cytosol aminopeptidase family, catalytic domain CFI11_01570 PF00484 Carbonic anhydrase CFI11_01580 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFI11_01580 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFI11_01595 PF03328 HpcH/HpaI aldolase/citrate lyase family CFI11_01600 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_01605 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_01610 PF00282 Pyridoxal-dependent decarboxylase conserved domain CFI11_01615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_01620 PF00171 Aldehyde dehydrogenase family CFI11_01630 PF01047 MarR family CFI11_01635 PF14403 Circularly permuted ATP-grasp type 2 CFI11_01645 PF08379 Bacterial transglutaminase-like N-terminal region CFI11_01645 PF01841 Transglutaminase-like superfamily CFI11_01660 PF01197 Ribosomal protein L31 CFI11_01665 PF01245 Ribosomal protein L19 CFI11_01670 PF01746 tRNA (Guanine-1)-methyltransferase CFI11_01675 PF05239 PRC-barrel domain CFI11_01675 PF01782 RimM N-terminal domain CFI11_01680 PF00881 Nitroreductase family CFI11_01685 PF00886 Ribosomal protein S16 CFI11_01720 PF02978 Signal peptide binding domain CFI11_01720 PF02881 SRP54-type protein, helical bundle domain CFI11_01720 PF00448 SRP54-type protein, GTPase domain CFI11_01740 PF00753 Metallo-beta-lactamase superfamily CFI11_01765 PF00180 Isocitrate/isopropylmalate dehydrogenase CFI11_01770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFI11_01770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFI11_01775 PF07729 FCD domain CFI11_01775 PF00392 Bacterial regulatory proteins, gntR family CFI11_01780 PF07722 Peptidase C26 CFI11_01790 PF05532 CsbD-like CFI11_01795 PF12282 Signal transduction histidine kinase CFI11_01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_01795 PF07568 Histidine kinase CFI11_01800 PF08281 Sigma-70, region 4 CFI11_01800 PF04542 Sigma-70 region 2 CFI11_01805 PF00072 Response regulator receiver domain CFI11_01810 PF00210 Ferritin-like domain CFI11_01820 PF13545 Crp-like helix-turn-helix domain CFI11_01820 PF00027 Cyclic nucleotide-binding domain CFI11_01825 PF03631 Virulence factor BrkB CFI11_01835 PF01738 Dienelactone hydrolase family CFI11_01840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_01845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_01845 PF03466 LysR substrate binding domain CFI11_01850 PF01226 Formate/nitrite transporter CFI11_01855 PF00296 Luciferase-like monooxygenase CFI11_01865 PF02525 Flavodoxin-like fold CFI11_01895 PF03466 LysR substrate binding domain CFI11_01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_01900 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter CFI11_01905 PF00119 ATP synthase A chain CFI11_01910 PF00137 ATP synthase subunit C CFI11_01915 PF00430 ATP synthase B/B' CF(0) CFI11_01920 PF00430 ATP synthase B/B' CF(0) CFI11_01925 PF00005 ABC transporter CFI11_01930 PF00392 Bacterial regulatory proteins, gntR family CFI11_01930 PF07729 FCD domain CFI11_01940 PF02463 RecF/RecN/SMC N terminal domain CFI11_01955 PF03186 CobD/Cbib protein CFI11_01960 PF00155 Aminotransferase class I and II CFI11_01970 PF13409 Glutathione S-transferase, N-terminal domain CFI11_01985 PF00155 Aminotransferase class I and II CFI11_01990 PF01327 Polypeptide deformylase CFI11_01995 PF01327 Polypeptide deformylase CFI11_02000 PF01327 Polypeptide deformylase CFI11_02005 PF00551 Formyl transferase CFI11_02005 PF02911 Formyl transferase, C-terminal domain CFI11_02015 PF00075 RNase H CFI11_02035 PF01810 LysE type translocator CFI11_02040 PF02401 LytB protein CFI11_02050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CFI11_02055 PF01192 RNA polymerase Rpb6 CFI11_02060 PF02824 TGS domain CFI11_02060 PF04607 Region found in RelA / SpoT proteins CFI11_02060 PF13291 ACT domain CFI11_02070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CFI11_02075 PF01810 LysE type translocator CFI11_02085 PF01648 4'-phosphopantetheinyl transferase superfamily CFI11_02090 PF10502 Signal peptidase, peptidase S26 CFI11_02095 PF14622 Ribonuclease-III-like CFI11_02095 PF00035 Double-stranded RNA binding motif CFI11_02100 PF07650 KH domain CFI11_02100 PF01926 50S ribosome-binding GTPase CFI11_02110 PF11967 Recombination protein O N terminal CFI11_02110 PF02565 Recombination protein O C terminal CFI11_02130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_02130 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_02130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_02140 PF10414 Sirohaem synthase dimerisation region CFI11_02140 PF14824 Sirohaem biosynthesis protein central CFI11_02140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_02145 PF00591 Glycosyl transferase family, a/b domain CFI11_02145 PF02885 Glycosyl transferase family, helical bundle domain CFI11_02150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFI11_02150 PF00384 Molybdopterin oxidoreductase CFI11_02150 PF04324 BFD-like [2Fe-2S] binding domain CFI11_02150 PF01568 Molydopterin dinucleotide binding domain CFI11_02155 PF00355 Rieske [2Fe-2S] domain CFI11_02160 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFI11_02160 PF18267 Rubredoxin NAD+ reductase C-terminal domain CFI11_02160 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_02160 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFI11_02160 PF04324 BFD-like [2Fe-2S] binding domain CFI11_02165 PF00005 ABC transporter CFI11_02170 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_02185 PF00005 ABC transporter CFI11_02190 PF08376 Nitrate and nitrite sensing CFI11_02190 PF03861 ANTAR domain CFI11_02195 PF01293 Phosphoenolpyruvate carboxykinase CFI11_02200 PF00486 Transcriptional regulatory protein, C terminal CFI11_02200 PF00072 Response regulator receiver domain CFI11_02205 PF00672 HAMP domain CFI11_02205 PF13756 Stimulus-sensing domain CFI11_02205 PF13755 Sensor N-terminal transmembrane domain CFI11_02205 PF00512 His Kinase A (phospho-acceptor) domain CFI11_02205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_02210 PF02603 HPr Serine kinase N terminus CFI11_02210 PF07475 HPr Serine kinase C-terminal domain CFI11_02215 PF03668 P-loop ATPase protein family CFI11_02220 PF03610 PTS system fructose IIA component CFI11_02220 PF03830 PTS system sorbose subfamily IIB component CFI11_02225 PF00381 PTS HPr component phosphorylation site CFI11_02235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFI11_02235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFI11_02245 PF00766 Electron transfer flavoprotein FAD-binding domain CFI11_02245 PF01012 Electron transfer flavoprotein domain CFI11_02250 PF01012 Electron transfer flavoprotein domain CFI11_02255 PF01923 Cobalamin adenosyltransferase CFI11_02265 PF00106 short chain dehydrogenase CFI11_02270 PF08239 Bacterial SH3 domain CFI11_02270 PF01520 N-acetylmuramoyl-L-alanine amidase CFI11_02275 PF00521 DNA gyrase/topoisomerase IV, subunit A CFI11_02275 PF03989 DNA gyrase C-terminal domain, beta-propeller CFI11_02280 PF00067 Cytochrome P450 CFI11_02290 PF03143 Elongation factor Tu C-terminal domain CFI11_02290 PF03144 Elongation factor Tu domain 2 CFI11_02290 PF00009 Elongation factor Tu GTP binding domain CFI11_02305 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_02315 PF02515 CoA-transferase family III CFI11_02370 PF03852 DNA mismatch endonuclease Vsr CFI11_02375 PF00145 C-5 cytosine-specific DNA methylase CFI11_02400 PF00589 Phage integrase family CFI11_02400 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_02460 PF00467 KOW motif CFI11_02460 PF02357 Transcription termination factor nusG CFI11_02465 PF00298 Ribosomal protein L11, RNA binding domain CFI11_02465 PF03946 Ribosomal protein L11, N-terminal domain CFI11_02470 PF00687 Ribosomal protein L1p/L10e family CFI11_02475 PF00466 Ribosomal protein L10 CFI11_02480 PF00542 Ribosomal protein L7/L12 C-terminal domain CFI11_02480 PF16320 Ribosomal protein L7/L12 dimerisation domain CFI11_02485 PF04563 RNA polymerase beta subunit CFI11_02485 PF04565 RNA polymerase Rpb2, domain 3 CFI11_02485 PF10385 RNA polymerase beta subunit external 1 domain CFI11_02485 PF04560 RNA polymerase Rpb2, domain 7 CFI11_02485 PF04561 RNA polymerase Rpb2, domain 2 CFI11_02485 PF00562 RNA polymerase Rpb2, domain 6 CFI11_02490 PF04997 RNA polymerase Rpb1, domain 1 CFI11_02490 PF00623 RNA polymerase Rpb1, domain 2 CFI11_02490 PF04998 RNA polymerase Rpb1, domain 5 CFI11_02490 PF05000 RNA polymerase Rpb1, domain 4 CFI11_02490 PF04983 RNA polymerase Rpb1, domain 3 CFI11_02495 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_02495 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_02500 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_02505 PF00005 ABC transporter CFI11_02505 PF08402 TOBE domain CFI11_02510 PF00005 ABC transporter CFI11_02510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_02550 PF00164 Ribosomal protein S12/S23 CFI11_02555 PF00177 Ribosomal protein S7p/S5e CFI11_02560 PF14492 Elongation Factor G, domain II CFI11_02560 PF00009 Elongation factor Tu GTP binding domain CFI11_02560 PF00679 Elongation factor G C-terminus CFI11_02560 PF03144 Elongation factor Tu domain 2 CFI11_02560 PF03764 Elongation factor G, domain IV CFI11_02570 PF03144 Elongation factor Tu domain 2 CFI11_02570 PF03143 Elongation factor Tu C-terminal domain CFI11_02570 PF00009 Elongation factor Tu GTP binding domain CFI11_02575 PF00338 Ribosomal protein S10p/S20e CFI11_02580 PF00297 Ribosomal protein L3 CFI11_02585 PF00573 Ribosomal protein L4/L1 family CFI11_02590 PF00276 Ribosomal protein L23 CFI11_02600 PF00181 Ribosomal Proteins L2, RNA binding domain CFI11_02600 PF03947 Ribosomal Proteins L2, C-terminal domain CFI11_02605 PF00203 Ribosomal protein S19 CFI11_02610 PF00237 Ribosomal protein L22p/L17e CFI11_02615 PF07650 KH domain CFI11_02615 PF00189 Ribosomal protein S3, C-terminal domain CFI11_02620 PF00252 Ribosomal protein L16p/L10e CFI11_02630 PF00831 Ribosomal L29 protein CFI11_02635 PF00366 Ribosomal protein S17 CFI11_02640 PF00238 Ribosomal protein L14p/L23e CFI11_02645 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CFI11_02645 PF00467 KOW motif CFI11_02650 PF00673 ribosomal L5P family C-terminus CFI11_02650 PF00281 Ribosomal protein L5 CFI11_02655 PF00253 Ribosomal protein S14p/S29e CFI11_02660 PF00410 Ribosomal protein S8 CFI11_02665 PF00347 Ribosomal protein L6 CFI11_02670 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CFI11_02675 PF00333 Ribosomal protein S5, N-terminal domain CFI11_02675 PF03719 Ribosomal protein S5, C-terminal domain CFI11_02680 PF00327 Ribosomal protein L30p/L7e CFI11_02685 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_02685 PF00672 HAMP domain CFI11_02690 PF01323 DSBA-like thioredoxin domain CFI11_02700 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CFI11_02705 PF00344 SecY translocase CFI11_02715 PF00416 Ribosomal protein S13/S18 CFI11_02720 PF00411 Ribosomal protein S11 CFI11_02725 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CFI11_02725 PF01000 RNA polymerase Rpb3/RpoA insert domain CFI11_02725 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CFI11_02730 PF01196 Ribosomal protein L17 CFI11_02735 PF13180 PDZ domain CFI11_02740 PF16193 AAA C-terminal domain CFI11_02740 PF12002 MgsA AAA+ ATPase C terminal CFI11_02740 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_02745 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CFI11_02750 PF01479 S4 domain CFI11_02750 PF00849 RNA pseudouridylate synthase CFI11_02755 PF13419 Haloacid dehalogenase-like hydrolase CFI11_02765 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFI11_02770 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_02775 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_02780 PF00005 ABC transporter CFI11_02800 PF00696 Amino acid kinase family CFI11_02805 PF01926 50S ribosome-binding GTPase CFI11_02815 PF14849 YidC periplasmic domain CFI11_02815 PF02096 60Kd inner membrane protein CFI11_02820 PF12792 CSS motif domain associated with EAL CFI11_02820 PF00563 EAL domain CFI11_02825 PF01171 PP-loop family CFI11_02840 PF01809 Putative membrane protein insertion efficiency factor CFI11_02845 PF00825 Ribonuclease P CFI11_02850 PF00468 Ribosomal protein L34 CFI11_02860 PF00403 Heavy-metal-associated domain CFI11_02860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_02860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFI11_02865 PF00989 PAS fold CFI11_02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_02865 PF00512 His Kinase A (phospho-acceptor) domain CFI11_02875 PF03737 Aldolase/RraA CFI11_02880 PF00596 Class II Aldolase and Adducin N-terminal domain CFI11_02885 PF07005 Sugar-binding N-terminal domain CFI11_02885 PF17042 Nucleotide-binding C-terminal domain CFI11_02895 PF00180 Isocitrate/isopropylmalate dehydrogenase CFI11_02910 PF01970 Tripartite tricarboxylate transporter TctA family CFI11_02915 PF00392 Bacterial regulatory proteins, gntR family CFI11_02915 PF07729 FCD domain CFI11_02920 PF02142 MGS-like domain CFI11_02960 PF02687 FtsX-like permease family CFI11_02960 PF00005 ABC transporter CFI11_02960 PF12704 MacB-like periplasmic core domain CFI11_02990 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_02995 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03000 PF00005 ABC transporter CFI11_03000 PF17912 MalK OB fold domain CFI11_03045 PF00005 ABC transporter CFI11_03050 PF01032 FecCD transport family CFI11_03060 PF00593 TonB dependent receptor CFI11_03060 PF07715 TonB-dependent Receptor Plug Domain CFI11_03110 PF13416 Bacterial extracellular solute-binding protein CFI11_03115 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03120 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03125 PF08402 TOBE domain CFI11_03125 PF00005 ABC transporter CFI11_03130 PF01546 Peptidase family M20/M25/M40 CFI11_03130 PF07687 Peptidase dimerisation domain CFI11_03135 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_03135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFI11_03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_03140 PF03466 LysR substrate binding domain CFI11_03150 PF01042 Endoribonuclease L-PSP CFI11_03170 PF03466 LysR substrate binding domain CFI11_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_03175 PF00578 AhpC/TSA family CFI11_03175 PF10417 C-terminal domain of 1-Cys peroxiredoxin CFI11_03190 PF04143 Sulphur transport CFI11_03200 PF00753 Metallo-beta-lactamase superfamily CFI11_03210 PF00916 Sulfate permease family CFI11_03210 PF01740 STAS domain CFI11_03215 PF00392 Bacterial regulatory proteins, gntR family CFI11_03215 PF07729 FCD domain CFI11_03220 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_03230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_03240 PF00501 AMP-binding enzyme CFI11_03240 PF13193 AMP-binding enzyme C-terminal domain CFI11_03265 PF02424 ApbE family CFI11_03270 PF11973 NQRA C-terminal domain CFI11_03270 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CFI11_03275 PF03116 NQR2, RnfD, RnfE family CFI11_03280 PF04205 FMN-binding domain CFI11_03285 PF02508 Rnf-Nqr subunit, membrane protein CFI11_03290 PF02508 Rnf-Nqr subunit, membrane protein CFI11_03295 PF00970 Oxidoreductase FAD-binding domain CFI11_03295 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_03295 PF00175 Oxidoreductase NAD-binding domain CFI11_03305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_03305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFI11_03310 PF08450 SMP-30/Gluconolactonase/LRE-like region CFI11_03315 PF02653 Branched-chain amino acid transport system / permease component CFI11_03320 PF02653 Branched-chain amino acid transport system / permease component CFI11_03325 PF00005 ABC transporter CFI11_03330 PF13407 Periplasmic binding protein domain CFI11_03335 PF00356 Bacterial regulatory proteins, lacI family CFI11_03335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CFI11_03345 PF03209 PUCC protein CFI11_03350 PF00556 Antenna complex alpha/beta subunit CFI11_03355 PF00556 Antenna complex alpha/beta subunit CFI11_03360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFI11_03365 PF01098 Cell cycle protein CFI11_03370 PF00905 Penicillin binding protein transpeptidase domain CFI11_03370 PF03717 Penicillin-binding Protein dimerisation domain CFI11_03380 PF04085 rod shape-determining protein MreC CFI11_03390 PF01494 FAD binding domain CFI11_03400 PF02540 NAD synthase CFI11_03400 PF00795 Carbon-nitrogen hydrolase CFI11_03415 PF01266 FAD dependent oxidoreductase CFI11_03435 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFI11_03440 PF01554 MatE CFI11_03450 PF02082 Transcriptional regulator CFI11_03460 PF00005 ABC transporter CFI11_03465 PF13472 GDSL-like Lipase/Acylhydrolase family CFI11_03475 PF00313 'Cold-shock' DNA-binding domain CFI11_03495 PF03734 L,D-transpeptidase catalytic domain CFI11_03495 PF17969 L,D-transpeptidase C-terminal domain CFI11_03505 PF00034 Cytochrome c CFI11_03505 PF03150 Di-haem cytochrome c peroxidase CFI11_03515 PF00005 ABC transporter CFI11_03515 PF12848 ABC transporter CFI11_03520 PF01467 Cytidylyltransferase-like CFI11_03535 PF01921 tRNA synthetases class I (K) CFI11_03560 PF13614 AAA domain CFI11_03580 PF00582 Universal stress protein family CFI11_03590 PF17757 UvrB interaction domain CFI11_03590 PF12344 Ultra-violet resistance protein B CFI11_03590 PF02151 UvrB/uvrC motif CFI11_03590 PF00271 Helicase conserved C-terminal domain CFI11_03590 PF04851 Type III restriction enzyme, res subunit CFI11_03605 PF00583 Acetyltransferase (GNAT) family CFI11_03620 PF01037 Lrp/AsnC ligand binding domain CFI11_03620 PF13404 AsnC-type helix-turn-helix domain CFI11_03625 PF07969 Amidohydrolase family CFI11_03630 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03635 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03635 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_03640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_03645 PF01979 Amidohydrolase family CFI11_03650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_03650 PF00005 ABC transporter CFI11_03655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_03655 PF00005 ABC transporter CFI11_03660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_03660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_03670 PF00005 ABC transporter CFI11_03675 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03680 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03685 PF00795 Carbon-nitrogen hydrolase CFI11_03690 PF01613 Flavin reductase like domain CFI11_03695 PF00701 Dihydrodipicolinate synthetase family CFI11_03705 PF01979 Amidohydrolase family CFI11_03705 PF00449 Urease alpha-subunit, N-terminal domain CFI11_03710 PF01177 Asp/Glu/Hydantoin racemase CFI11_03715 PF03466 LysR substrate binding domain CFI11_03715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_03725 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFI11_03740 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CFI11_03740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFI11_03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_03745 PF03466 LysR substrate binding domain CFI11_03750 PF12801 4Fe-4S binding domain CFI11_03750 PF13746 4Fe-4S dicluster domain CFI11_03750 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CFI11_03760 PF00403 Heavy-metal-associated domain CFI11_03765 PF03597 Cytochrome oxidase maturation protein cbb3-type CFI11_03770 PF07943 Penicillin-binding protein 5, C-terminal domain CFI11_03770 PF00768 D-alanyl-D-alanine carboxypeptidase CFI11_03775 PF00005 ABC transporter CFI11_03775 PF12848 ABC transporter CFI11_03785 PF02617 ATP-dependent Clp protease adaptor protein ClpS CFI11_03790 PF08468 Methyltransferase small domain N-terminal CFI11_03790 PF05175 Methyltransferase small domain CFI11_03800 PF01218 Coproporphyrinogen III oxidase CFI11_03815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CFI11_03815 PF03900 Porphobilinogen deaminase, C-terminal domain CFI11_03820 PF01208 Uroporphyrinogen decarboxylase (URO-D) CFI11_03830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_03840 PF14824 Sirohaem biosynthesis protein central CFI11_03840 PF10414 Sirohaem synthase dimerisation region CFI11_03840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_03845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CFI11_03845 PF07685 CobB/CobQ-like glutamine amidotransferase domain CFI11_03850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_03860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_03865 PF02571 Precorrin-6x reductase CbiJ/CobK CFI11_03870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_03875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_03880 PF02570 Precorrin-8X methylmutase CFI11_03885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFI11_03890 PF02514 CobN/Magnesium Chelatase CFI11_03895 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFI11_03895 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFI11_03915 PF00005 ABC transporter CFI11_03920 PF00501 AMP-binding enzyme CFI11_03925 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_03925 PF00005 ABC transporter CFI11_03935 PF02653 Branched-chain amino acid transport system / permease component CFI11_03940 PF02653 Branched-chain amino acid transport system / permease component CFI11_03950 PF00005 ABC transporter CFI11_03965 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_03970 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFI11_03970 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFI11_03975 PF07969 Amidohydrolase family CFI11_03980 PF03466 LysR substrate binding domain CFI11_03980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_03985 PF00561 alpha/beta hydrolase fold CFI11_03990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_03995 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04000 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_04000 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04005 PF00005 ABC transporter CFI11_04005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_04010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_04010 PF00005 ABC transporter CFI11_04015 PF00444 Ribosomal protein L36 CFI11_04030 PF11799 impB/mucB/samB family C-terminal domain CFI11_04030 PF00817 impB/mucB/samB family CFI11_04040 PF00453 Ribosomal protein L20 CFI11_04045 PF01632 Ribosomal protein L35 CFI11_04055 PF02887 Pyruvate kinase, alpha/beta domain CFI11_04055 PF00224 Pyruvate kinase, barrel domain CFI11_04070 PF03328 HpcH/HpaI aldolase/citrate lyase family CFI11_04080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFI11_04080 PF13378 Enolase C-terminal domain-like CFI11_04085 PF01063 Amino-transferase class IV CFI11_04110 PF01272 Transcription elongation factor, GreA/GreB, C-term CFI11_04110 PF03449 Transcription elongation factor, N-terminal CFI11_04125 PF00376 MerR family regulatory protein CFI11_04125 PF09278 MerR, DNA binding CFI11_04145 PF08544 GHMP kinases C terminal CFI11_04150 PF00348 Polyprenyl synthetase CFI11_04175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_04175 PF03466 LysR substrate binding domain CFI11_04185 PF02803 Thiolase, C-terminal domain CFI11_04185 PF00108 Thiolase, N-terminal domain CFI11_04195 PF03352 Methyladenine glycosylase CFI11_04205 PF04116 Fatty acid hydroxylase superfamily CFI11_04220 PF08534 Redoxin CFI11_04225 PF00206 Lyase CFI11_04225 PF14698 Argininosuccinate lyase C-terminal CFI11_04245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFI11_04245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFI11_04260 PF00005 ABC transporter CFI11_04280 PF02469 Fasciclin domain CFI11_04285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFI11_04285 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_04300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFI11_04300 PF00364 Biotin-requiring enzyme CFI11_04300 PF02817 e3 binding domain CFI11_04305 PF16078 2-oxoglutarate dehydrogenase N-terminus CFI11_04305 PF16870 2-oxoglutarate dehydrogenase C-terminal CFI11_04305 PF00676 Dehydrogenase E1 component CFI11_04305 PF02779 Transketolase, pyrimidine binding domain CFI11_04315 PF00549 CoA-ligase CFI11_04315 PF02629 CoA binding domain CFI11_04325 PF08442 ATP-grasp domain CFI11_04325 PF00549 CoA-ligase CFI11_04335 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_04340 PF00056 lactate/malate dehydrogenase, NAD binding domain CFI11_04340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CFI11_04355 PF03328 HpcH/HpaI aldolase/citrate lyase family CFI11_04370 PF01575 MaoC like domain CFI11_04385 PF03544 Gram-negative bacterial TonB protein C-terminal CFI11_04400 PF01618 MotA/TolQ/ExbB proton channel family CFI11_04415 PF05171 Haemin-degrading HemS.ChuX domain CFI11_04420 PF01497 Periplasmic binding protein CFI11_04425 PF01032 FecCD transport family CFI11_04430 PF00005 ABC transporter CFI11_04485 PF01037 Lrp/AsnC ligand binding domain CFI11_04495 PF00245 Alkaline phosphatase CFI11_04505 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CFI11_04510 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04515 PF00005 ABC transporter CFI11_04550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_04550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_04550 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_04560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_04560 PF03466 LysR substrate binding domain CFI11_04565 PF00893 Small Multidrug Resistance protein CFI11_04575 PF01694 Rhomboid family CFI11_04595 PF04199 Putative cyclase CFI11_04610 PF13193 AMP-binding enzyme C-terminal domain CFI11_04610 PF00501 AMP-binding enzyme CFI11_04615 PF00866 Ring hydroxylating beta subunit CFI11_04620 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CFI11_04620 PF00355 Rieske [2Fe-2S] domain CFI11_04635 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_04645 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_04665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_04665 PF00005 ABC transporter CFI11_04670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_04670 PF00005 ABC transporter CFI11_04675 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_04675 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04680 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_04695 PF04199 Putative cyclase CFI11_04700 PF01593 Flavin containing amine oxidoreductase CFI11_04710 PF02626 Carboxyltransferase domain, subdomain A and B CFI11_04720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFI11_04720 PF00289 Biotin carboxylase, N-terminal domain CFI11_04720 PF02785 Biotin carboxylase C-terminal domain CFI11_04730 PF03746 LamB/YcsF family CFI11_04735 PF02653 Branched-chain amino acid transport system / permease component CFI11_04740 PF00005 ABC transporter CFI11_04745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CFI11_04750 PF03466 LysR substrate binding domain CFI11_04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_04755 PF03358 NADPH-dependent FMN reductase CFI11_04760 PF00892 EamA-like transporter family CFI11_04770 PF14031 Putative serine dehydratase domain CFI11_04770 PF01168 Alanine racemase, N-terminal domain CFI11_04775 PF00266 Aminotransferase class-V CFI11_04785 PF03466 LysR substrate binding domain CFI11_04795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_04800 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04805 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04805 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_04810 PF00005 ABC transporter CFI11_04810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_04815 PF04264 YceI-like domain CFI11_04835 PF13439 Glycosyltransferase Family 4 CFI11_04835 PF00534 Glycosyl transferases group 1 CFI11_04840 PF00459 Inositol monophosphatase family CFI11_04865 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFI11_04865 PF01872 RibD C-terminal domain CFI11_04875 PF00485 Phosphoribulokinase / Uridine kinase family CFI11_04880 PF09278 MerR, DNA binding CFI11_04880 PF00376 MerR family regulatory protein CFI11_04885 PF00403 Heavy-metal-associated domain CFI11_04910 PF03705 CheR methyltransferase, all-alpha domain CFI11_04910 PF01339 CheB methylesterase CFI11_04910 PF08448 PAS fold CFI11_04910 PF01739 CheR methyltransferase, SAM binding domain CFI11_04920 PF00356 Bacterial regulatory proteins, lacI family CFI11_04930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFI11_04930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFI11_04945 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_04955 PF03459 TOBE domain CFI11_04955 PF17912 MalK OB fold domain CFI11_04955 PF00005 ABC transporter CFI11_04960 PF08402 TOBE domain CFI11_04960 PF00005 ABC transporter CFI11_04965 PF02733 Dak1 domain CFI11_04965 PF02734 DAK2 domain CFI11_04970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFI11_04970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFI11_04975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFI11_04975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFI11_04985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_05005 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05010 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05010 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_05020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_05020 PF00005 ABC transporter CFI11_05025 PF00005 ABC transporter CFI11_05025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_05030 PF00884 Sulfatase CFI11_05030 PF16347 Domain of unknown function (DUF4976) CFI11_05035 PF09339 IclR helix-turn-helix domain CFI11_05035 PF01614 Bacterial transcriptional regulator CFI11_05040 PF00266 Aminotransferase class-V CFI11_05045 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_05055 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFI11_05060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFI11_05060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFI11_05075 PF00128 Alpha amylase, catalytic domain CFI11_05080 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFI11_05085 PF01730 UreF CFI11_05090 PF05194 UreE urease accessory protein, C-terminal domain CFI11_05090 PF02814 UreE urease accessory protein, N-terminal domain CFI11_05105 PF01979 Amidohydrolase family CFI11_05105 PF00449 Urease alpha-subunit, N-terminal domain CFI11_05120 PF02627 Carboxymuconolactone decarboxylase family CFI11_05125 PF04199 Putative cyclase CFI11_05130 PF00699 Urease beta subunit CFI11_05135 PF00547 Urease, gamma subunit CFI11_05140 PF01774 UreD urease accessory protein CFI11_05145 PF00958 GMP synthase C terminal domain CFI11_05145 PF02540 NAD synthase CFI11_05145 PF00117 Glutamine amidotransferase class-I CFI11_05150 PF00067 Cytochrome P450 CFI11_05155 PF03951 Glutamine synthetase, beta-Grasp domain CFI11_05155 PF00120 Glutamine synthetase, catalytic domain CFI11_05160 PF00512 His Kinase A (phospho-acceptor) domain CFI11_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_05170 PF00072 Response regulator receiver domain CFI11_05170 PF00196 Bacterial regulatory proteins, luxR family CFI11_05195 PF00005 ABC transporter CFI11_05230 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_05230 PF01799 [2Fe-2S] binding domain CFI11_05235 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFI11_05235 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_05240 PF03450 CO dehydrogenase flavoprotein C-terminal domain CFI11_05240 PF00941 FAD binding domain in molybdopterin dehydrogenase CFI11_05250 PF12801 4Fe-4S binding domain CFI11_05250 PF04205 FMN-binding domain CFI11_05255 PF08042 PqqA family CFI11_05260 PF12706 Beta-lactamase superfamily domain CFI11_05265 PF03070 TENA/THI-4/PQQC family CFI11_05270 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CFI11_05275 PF13186 Iron-sulfur cluster-binding domain CFI11_05275 PF04055 Radical SAM superfamily CFI11_05280 PF00202 Aminotransferase class-III CFI11_05285 PF01614 Bacterial transcriptional regulator CFI11_05285 PF09339 IclR helix-turn-helix domain CFI11_05290 PF03401 Tripartite tricarboxylate transporter family receptor CFI11_05300 PF01970 Tripartite tricarboxylate transporter TctA family CFI11_05315 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_05325 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_05345 PF00378 Enoyl-CoA hydratase/isomerase CFI11_05345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFI11_05345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFI11_05350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_05350 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_05350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_05355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_05355 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_05355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_05365 PF00378 Enoyl-CoA hydratase/isomerase CFI11_05370 PF00501 AMP-binding enzyme CFI11_05370 PF13193 AMP-binding enzyme C-terminal domain CFI11_05375 PF00834 Ribulose-phosphate 3 epimerase family CFI11_05380 PF00005 ABC transporter CFI11_05390 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05395 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05400 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_05400 PF14602 Hexapeptide repeat of succinyl-transferase CFI11_05400 PF12804 MobA-like NTP transferase domain CFI11_05405 PF00392 Bacterial regulatory proteins, gntR family CFI11_05405 PF07702 UTRA domain CFI11_05410 PF06754 Phosphonate metabolism protein PhnG CFI11_05415 PF05845 Bacterial phosphonate metabolism protein (PhnH) CFI11_05420 PF05861 Bacterial phosphonate metabolism protein (PhnI) CFI11_05425 PF06007 Phosphonate metabolism protein PhnJ CFI11_05430 PF12697 Alpha/beta hydrolase family CFI11_05430 PF08241 Methyltransferase domain CFI11_05435 PF00005 ABC transporter CFI11_05440 PF00005 ABC transporter CFI11_05455 PF07969 Amidohydrolase family CFI11_05465 PF00512 His Kinase A (phospho-acceptor) domain CFI11_05465 PF08446 PAS fold CFI11_05465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_05465 PF01590 GAF domain CFI11_05465 PF00360 Phytochrome region CFI11_05490 PF00300 Histidine phosphatase superfamily (branch 1) CFI11_05495 PF13439 Glycosyltransferase Family 4 CFI11_05495 PF00534 Glycosyl transferases group 1 CFI11_05500 PF00534 Glycosyl transferases group 1 CFI11_05510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFI11_05510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFI11_05510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFI11_05515 PF00924 Mechanosensitive ion channel CFI11_05525 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05525 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_05530 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05540 PF00005 ABC transporter CFI11_05540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_05555 PF00005 ABC transporter CFI11_05560 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_05565 PF07969 Amidohydrolase family CFI11_05575 PF02525 Flavodoxin-like fold CFI11_05580 PF02525 Flavodoxin-like fold CFI11_05595 PF01515 Phosphate acetyl/butaryl transferase CFI11_05600 PF00871 Acetokinase family CFI11_05610 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CFI11_05615 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFI11_05615 PF00361 Proton-conducting membrane transporter CFI11_05615 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CFI11_05620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_05620 PF03466 LysR substrate binding domain CFI11_05630 PF01037 Lrp/AsnC ligand binding domain CFI11_05635 PF05922 Peptidase inhibitor I9 CFI11_05635 PF00082 Subtilase family CFI11_05640 PF08453 Peptidase family M9 N-terminal CFI11_05640 PF01752 Collagenase CFI11_05640 PF18496 Collagenase G catalytic helper subdomain CFI11_05645 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_05645 PF00672 HAMP domain CFI11_05655 PF00005 ABC transporter CFI11_05655 PF00664 ABC transporter transmembrane region CFI11_05660 PF00486 Transcriptional regulatory protein, C terminal CFI11_05660 PF00072 Response regulator receiver domain CFI11_05665 PF00672 HAMP domain CFI11_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_05665 PF00512 His Kinase A (phospho-acceptor) domain CFI11_05685 PF01425 Amidase CFI11_05690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFI11_05690 PF13378 Enolase C-terminal domain-like CFI11_05695 PF00107 Zinc-binding dehydrogenase CFI11_05695 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_05700 PF07690 Major Facilitator Superfamily CFI11_05705 PF10397 Adenylosuccinate lyase C-terminus CFI11_05705 PF00206 Lyase CFI11_05710 PF00775 Dioxygenase CFI11_05715 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CFI11_05715 PF00775 Dioxygenase CFI11_05720 PF02627 Carboxymuconolactone decarboxylase family CFI11_05725 PF12146 Serine aminopeptidase, S33 CFI11_05735 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_05740 PF00561 alpha/beta hydrolase fold CFI11_05740 PF00364 Biotin-requiring enzyme CFI11_05755 PF00109 Beta-ketoacyl synthase, N-terminal domain CFI11_05755 PF02801 Beta-ketoacyl synthase, C-terminal domain CFI11_05760 PF07977 FabA-like domain CFI11_05785 PF00919 Uncharacterized protein family UPF0004 CFI11_05785 PF04055 Radical SAM superfamily CFI11_05785 PF01938 TRAM domain CFI11_05790 PF00691 OmpA family CFI11_05800 PF02562 PhoH-like protein CFI11_05805 PF02130 Uncharacterized protein family UPF0054 CFI11_05810 PF03471 Transporter associated domain CFI11_05810 PF00571 CBS domain CFI11_05815 PF00795 Carbon-nitrogen hydrolase CFI11_05820 PF00438 S-adenosylmethionine synthetase, N-terminal domain CFI11_05820 PF02773 S-adenosylmethionine synthetase, C-terminal domain CFI11_05820 PF02772 S-adenosylmethionine synthetase, central domain CFI11_05835 PF02390 Putative methyltransferase CFI11_05845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFI11_05850 PF02224 Cytidylate kinase CFI11_05860 PF00575 S1 RNA binding domain CFI11_05865 PF00216 Bacterial DNA-binding protein CFI11_05875 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CFI11_05885 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_05915 PF01195 Peptidyl-tRNA hydrolase CFI11_05920 PF03992 Antibiotic biosynthesis monooxygenase CFI11_05925 PF01386 Ribosomal L25p family CFI11_05925 PF14693 Ribosomal protein TL5, C-terminal domain CFI11_05940 PF01070 FMN-dependent dehydrogenase CFI11_05955 PF01575 MaoC like domain CFI11_05960 PF00290 Tryptophan synthase alpha chain CFI11_05965 PF06071 Protein of unknown function (DUF933) CFI11_05965 PF01926 50S ribosome-binding GTPase CFI11_05975 PF00005 ABC transporter CFI11_05975 PF12704 MacB-like periplasmic core domain CFI11_05975 PF02687 FtsX-like permease family CFI11_05985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFI11_05985 PF00529 HlyD membrane-fusion protein of T1SS CFI11_06080 PF00043 Glutathione S-transferase, C-terminal domain CFI11_06080 PF02798 Glutathione S-transferase, N-terminal domain CFI11_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_06105 PF03466 LysR substrate binding domain CFI11_06130 PF00589 Phage integrase family CFI11_06130 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_06170 PF13378 Enolase C-terminal domain-like CFI11_06170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFI11_06175 PF08450 SMP-30/Gluconolactonase/LRE-like region CFI11_06180 PF00941 FAD binding domain in molybdopterin dehydrogenase CFI11_06180 PF03450 CO dehydrogenase flavoprotein C-terminal domain CFI11_06185 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_06185 PF01799 [2Fe-2S] binding domain CFI11_06190 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFI11_06190 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_06195 PF00440 Bacterial regulatory proteins, tetR family CFI11_06195 PF18665 Tetracyclin repressor-like, C-terminal domain CFI11_06200 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFI11_06200 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFI11_06205 PF02780 Transketolase, C-terminal domain CFI11_06205 PF02779 Transketolase, pyrimidine binding domain CFI11_06225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_06225 PF03466 LysR substrate binding domain CFI11_06245 PF00106 short chain dehydrogenase CFI11_06255 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_06255 PF00589 Phage integrase family CFI11_06260 PF01425 Amidase CFI11_06270 PF01179 Copper amine oxidase, enzyme domain CFI11_06270 PF02728 Copper amine oxidase, N3 domain CFI11_06270 PF02727 Copper amine oxidase, N2 domain CFI11_06280 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_06280 PF00005 ABC transporter CFI11_06285 PF00005 ABC transporter CFI11_06290 PF02653 Branched-chain amino acid transport system / permease component CFI11_06320 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFI11_06320 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFI11_06320 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFI11_06330 PF00196 Bacterial regulatory proteins, luxR family CFI11_06330 PF00072 Response regulator receiver domain CFI11_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_06340 PF00512 His Kinase A (phospho-acceptor) domain CFI11_06340 PF18415 Histidine kinase receptor ArcB trans-membrane domain CFI11_06340 PF01627 Hpt domain CFI11_06340 PF00989 PAS fold CFI11_06340 PF00072 Response regulator receiver domain CFI11_06345 PF01593 Flavin containing amine oxidoreductase CFI11_06360 PF08533 Beta-galactosidase C-terminal domain CFI11_06360 PF02449 Beta-galactosidase CFI11_06360 PF08532 Beta-galactosidase trimerisation domain CFI11_06365 PF08450 SMP-30/Gluconolactonase/LRE-like region CFI11_06370 PF01081 KDPG and KHG aldolase CFI11_06375 PF05035 2-keto-3-deoxy-galactonokinase CFI11_06385 PF11975 Family 4 glycosyl hydrolase C-terminal domain CFI11_06385 PF02056 Family 4 glycosyl hydrolase CFI11_06390 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_06405 PF09339 IclR helix-turn-helix domain CFI11_06405 PF01614 Bacterial transcriptional regulator CFI11_06410 PF00005 ABC transporter CFI11_06410 PF17912 MalK OB fold domain CFI11_06415 PF00005 ABC transporter CFI11_06420 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_06425 PF13416 Bacterial extracellular solute-binding protein CFI11_06435 PF00512 His Kinase A (phospho-acceptor) domain CFI11_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_06435 PF00672 HAMP domain CFI11_06440 PF00486 Transcriptional regulatory protein, C terminal CFI11_06440 PF00072 Response regulator receiver domain CFI11_06445 PF01547 Bacterial extracellular solute-binding protein CFI11_06455 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_06460 PF00005 ABC transporter CFI11_06460 PF17912 MalK OB fold domain CFI11_06480 PF00106 short chain dehydrogenase CFI11_06490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFI11_06490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFI11_06490 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFI11_06505 PF00483 Nucleotidyl transferase CFI11_06505 PF01050 Mannose-6-phosphate isomerase CFI11_06520 PF16824 C-terminal carbohydrate-binding module CFI11_06520 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX CFI11_06540 PF01479 S4 domain CFI11_06540 PF00163 Ribosomal protein S4/S9 N-terminal domain CFI11_06545 PF00155 Aminotransferase class I and II CFI11_06550 PF02153 Prephenate dehydrogenase CFI11_06565 PF04752 ChaC-like protein CFI11_06575 PF01389 OmpA-like transmembrane domain CFI11_06575 PF00691 OmpA family CFI11_06585 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_06585 PF02861 Clp amino terminal domain, pathogenicity island component CFI11_06585 PF17871 AAA lid domain CFI11_06585 PF07724 AAA domain (Cdc48 subfamily) CFI11_06585 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_06590 PF16123 Hydroxyacylglutathione hydrolase C-terminus CFI11_06590 PF00753 Metallo-beta-lactamase superfamily CFI11_06595 PF08241 Methyltransferase domain CFI11_06600 PF00213 ATP synthase delta (OSCP) subunit CFI11_06605 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFI11_06605 PF00306 ATP synthase alpha/beta chain, C terminal domain CFI11_06605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFI11_06610 PF00231 ATP synthase CFI11_06615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFI11_06615 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFI11_06620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CFI11_06625 PF09458 H-type lectin domain CFI11_06635 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CFI11_06635 PF14572 Phosphoribosyl synthetase-associated domain CFI11_06650 PF01212 Beta-eliminating lyase CFI11_06655 PF03692 Putative zinc- or iron-chelating domain CFI11_06660 PF01687 Riboflavin kinase CFI11_06660 PF06574 FAD synthetase CFI11_06665 PF01575 MaoC like domain CFI11_06675 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_06680 PF00571 CBS domain CFI11_06680 PF00005 ABC transporter CFI11_06690 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_06690 PF01571 Aminomethyltransferase folate-binding domain CFI11_06695 PF00356 Bacterial regulatory proteins, lacI family CFI11_06700 PF02833 DHHA2 domain CFI11_06700 PF01368 DHH family CFI11_06710 PF13673 Acetyltransferase (GNAT) domain CFI11_06725 PF00166 Chaperonin 10 Kd subunit CFI11_06730 PF00118 TCP-1/cpn60 chaperonin family CFI11_06740 PF00892 EamA-like transporter family CFI11_06750 PF07969 Amidohydrolase family CFI11_06755 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CFI11_06755 PF02222 ATP-grasp domain CFI11_06760 PF00731 AIR carboxylase CFI11_06770 PF00011 Hsp20/alpha crystallin family CFI11_06790 PF14306 PUA-like domain CFI11_06790 PF01747 ATP-sulfurylase CFI11_06795 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_06800 PF01037 Lrp/AsnC ligand binding domain CFI11_06820 PF01790 Prolipoprotein diacylglyceryl transferase CFI11_06835 PF14748 Pyrroline-5-carboxylate reductase dimerisation CFI11_06835 PF03807 NADP oxidoreductase coenzyme F420-dependent CFI11_06840 PF01588 Putative tRNA binding domain CFI11_06845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFI11_06845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFI11_06850 PF00265 Thymidine kinase CFI11_06855 PF03358 NADPH-dependent FMN reductase CFI11_06860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFI11_06860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFI11_06880 PF02142 MGS-like domain CFI11_06880 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFI11_06880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFI11_06885 PF02310 B12 binding domain CFI11_06885 PF04055 Radical SAM superfamily CFI11_06890 PF02830 V4R domain CFI11_06900 PF00152 tRNA synthetases class II (D, K and N) CFI11_06900 PF02938 GAD domain CFI11_06900 PF01336 OB-fold nucleic acid binding domain CFI11_06920 PF00486 Transcriptional regulatory protein, C terminal CFI11_06920 PF00072 Response regulator receiver domain CFI11_06935 PF00043 Glutathione S-transferase, C-terminal domain CFI11_06935 PF13417 Glutathione S-transferase, N-terminal domain CFI11_06945 PF00881 Nitroreductase family CFI11_06950 PF00850 Histone deacetylase domain CFI11_06980 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CFI11_06990 PF04055 Radical SAM superfamily CFI11_06990 PF18693 TRAM domain CFI11_06990 PF00919 Uncharacterized protein family UPF0004 CFI11_07000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFI11_07000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFI11_07000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFI11_07000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFI11_07005 PF00793 DAHP synthetase I family CFI11_07015 PF00005 ABC transporter CFI11_07020 PF06965 Na+/H+ antiporter 1 CFI11_07050 PF01061 ABC-2 type transporter CFI11_07070 PF00893 Small Multidrug Resistance protein CFI11_07080 PF00873 AcrB/AcrD/AcrF family CFI11_07090 PF02569 Pantoate-beta-alanine ligase CFI11_07095 PF02548 Ketopantoate hydroxymethyltransferase CFI11_07100 PF01042 Endoribonuclease L-PSP CFI11_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_07105 PF03466 LysR substrate binding domain CFI11_07110 PF00582 Universal stress protein family CFI11_07125 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CFI11_07130 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFI11_07140 PF01899 Na+/H+ ion antiporter subunit CFI11_07145 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CFI11_07150 PF03334 Na+/H+ antiporter subunit CFI11_07170 PF02798 Glutathione S-transferase, N-terminal domain CFI11_07175 PF00202 Aminotransferase class-III CFI11_07180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFI11_07180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFI11_07190 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CFI11_07190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_07200 PF00271 Helicase conserved C-terminal domain CFI11_07200 PF00270 DEAD/DEAH box helicase CFI11_07200 PF04408 Helicase associated domain (HA2) CFI11_07200 PF08482 ATP-dependent helicase C-terminal CFI11_07210 PF00873 AcrB/AcrD/AcrF family CFI11_07240 PF01638 HxlR-like helix-turn-helix CFI11_07255 PF00830 Ribosomal L28 family CFI11_07265 PF02146 Sir2 family CFI11_07270 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFI11_07275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_07275 PF03466 LysR substrate binding domain CFI11_07285 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_07305 PF03144 Elongation factor Tu domain 2 CFI11_07305 PF00679 Elongation factor G C-terminus CFI11_07305 PF00009 Elongation factor Tu GTP binding domain CFI11_07305 PF06421 GTP-binding protein LepA C-terminus CFI11_07310 PF13274 Protein of unknown function (DUF4065) CFI11_07340 PF00561 alpha/beta hydrolase fold CFI11_07350 PF05675 Protein of unknown function (DUF817) CFI11_07355 PF00464 Serine hydroxymethyltransferase CFI11_07360 PF01513 ATP-NAD kinase CFI11_07365 PF13193 AMP-binding enzyme C-terminal domain CFI11_07365 PF00501 AMP-binding enzyme CFI11_07370 PF01425 Amidase CFI11_07375 PF13193 AMP-binding enzyme C-terminal domain CFI11_07375 PF00501 AMP-binding enzyme CFI11_07375 PF16177 Acetyl-coenzyme A synthetase N-terminus CFI11_07380 PF00390 Malic enzyme, N-terminal domain CFI11_07380 PF03949 Malic enzyme, NAD binding domain CFI11_07380 PF01515 Phosphate acetyl/butaryl transferase CFI11_07390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFI11_07395 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CFI11_07395 PF00591 Glycosyl transferase family, a/b domain CFI11_07395 PF02885 Glycosyl transferase family, helical bundle domain CFI11_07400 PF01676 Metalloenzyme superfamily CFI11_07420 PF13193 AMP-binding enzyme C-terminal domain CFI11_07420 PF00501 AMP-binding enzyme CFI11_07440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFI11_07440 PF00378 Enoyl-CoA hydratase/isomerase CFI11_07440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFI11_07450 PF02803 Thiolase, C-terminal domain CFI11_07450 PF00108 Thiolase, N-terminal domain CFI11_07460 PF13409 Glutathione S-transferase, N-terminal domain CFI11_07465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_07465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_07465 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_07475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_07475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_07475 PF12806 Acetyl-CoA dehydrogenase C-terminal like CFI11_07475 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_07480 PF13411 MerR HTH family regulatory protein CFI11_07485 PF00376 MerR family regulatory protein CFI11_07485 PF09278 MerR, DNA binding CFI11_07500 PF01554 MatE CFI11_07505 PF01180 Dihydroorotate dehydrogenase CFI11_07520 PF02872 5'-nucleotidase, C-terminal domain CFI11_07520 PF00149 Calcineurin-like phosphoesterase CFI11_07525 PF02586 SOS response associated peptidase (SRAP) CFI11_07530 PF12802 MarR family CFI11_07535 PF03746 LamB/YcsF family CFI11_07540 PF02626 Carboxyltransferase domain, subdomain A and B CFI11_07555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_07565 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_07570 PF01266 FAD dependent oxidoreductase CFI11_07595 PF08402 TOBE domain CFI11_07595 PF00005 ABC transporter CFI11_07610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFI11_07610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFI11_07620 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_07625 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_07630 PF17912 MalK OB fold domain CFI11_07630 PF00005 ABC transporter CFI11_07635 PF00005 ABC transporter CFI11_07635 PF17912 MalK OB fold domain CFI11_07645 PF08220 DeoR-like helix-turn-helix domain CFI11_07645 PF00455 DeoR C terminal sensor domain CFI11_07650 PF01266 FAD dependent oxidoreductase CFI11_07650 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CFI11_07655 PF00501 AMP-binding enzyme CFI11_07655 PF13193 AMP-binding enzyme C-terminal domain CFI11_07660 PF01494 FAD binding domain CFI11_07675 PF00664 ABC transporter transmembrane region CFI11_07675 PF00005 ABC transporter CFI11_07690 PF00501 AMP-binding enzyme CFI11_07690 PF13193 AMP-binding enzyme C-terminal domain CFI11_07695 PF07859 alpha/beta hydrolase fold CFI11_07700 PF00005 ABC transporter CFI11_07700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_07710 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_07715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_07720 PF02595 Glycerate kinase family CFI11_07725 PF00939 Sodium:sulfate symporter transmembrane region CFI11_07735 PF05161 MOFRL family CFI11_07735 PF13660 Domain of unknown function (DUF4147) CFI11_07740 PF02580 D-Tyr-tRNA(Tyr) deacylase CFI11_07750 PF00011 Hsp20/alpha crystallin family CFI11_07775 PF05816 Toxic anion resistance protein (TelA) CFI11_07785 PF00849 RNA pseudouridylate synthase CFI11_07785 PF01479 S4 domain CFI11_07790 PF14437 MafB19-like deaminase CFI11_07800 PF00890 FAD binding domain CFI11_07805 PF01758 Sodium Bile acid symporter family CFI11_07810 PF03600 Citrate transporter CFI11_07810 PF02080 TrkA-C domain CFI11_07815 PF01709 Transcriptional regulator CFI11_07835 PF00664 ABC transporter transmembrane region CFI11_07835 PF00005 ABC transporter CFI11_07840 PF00266 Aminotransferase class-V CFI11_07850 PF00155 Aminotransferase class I and II CFI11_07860 PF00378 Enoyl-CoA hydratase/isomerase CFI11_07865 PF08264 Anticodon-binding domain of tRNA CFI11_07865 PF10458 Valyl tRNA synthetase tRNA binding arm CFI11_07865 PF00133 tRNA synthetases class I (I, L, M and V) CFI11_07870 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFI11_07870 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_07885 PF02219 Methylenetetrahydrofolate reductase CFI11_07890 PF03466 LysR substrate binding domain CFI11_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_07900 PF00107 Zinc-binding dehydrogenase CFI11_07900 PF16884 N-terminal domain of oxidoreductase CFI11_07905 PF00107 Zinc-binding dehydrogenase CFI11_07905 PF16884 N-terminal domain of oxidoreductase CFI11_07915 PF00459 Inositol monophosphatase family CFI11_07930 PF00171 Aldehyde dehydrogenase family CFI11_07930 PF01619 Proline dehydrogenase CFI11_07930 PF14850 DNA-binding domain of Proline dehydrogenase CFI11_07930 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CFI11_07935 PF01037 Lrp/AsnC ligand binding domain CFI11_07950 PF09334 tRNA synthetases class I (M) CFI11_07960 PF04264 YceI-like domain CFI11_07965 PF00248 Aldo/keto reductase family CFI11_07970 PF01965 DJ-1/PfpI family CFI11_07970 PF12833 Helix-turn-helix domain CFI11_07975 PF05853 beta-keto acid cleavage enzyme CFI11_07980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFI11_07980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFI11_08030 PF00072 Response regulator receiver domain CFI11_08030 PF00990 Diguanylate cyclase, GGDEF domain CFI11_08060 PF00563 EAL domain CFI11_08060 PF00990 Diguanylate cyclase, GGDEF domain CFI11_08060 PF03707 Bacterial signalling protein N terminal repeat CFI11_08065 PF00005 ABC transporter CFI11_08090 PF02329 Histidine carboxylase PI chain CFI11_08120 PF13439 Glycosyltransferase Family 4 CFI11_08120 PF00534 Glycosyl transferases group 1 CFI11_08195 PF06956 Regulator of RNA terminal phosphate cyclase CFI11_08195 PF00158 Sigma-54 interaction domain CFI11_08205 PF01368 DHH family CFI11_08205 PF02272 DHHA1 domain CFI11_08205 PF17768 RecJ OB domain CFI11_08210 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CFI11_08215 PF03447 Homoserine dehydrogenase, NAD binding domain CFI11_08215 PF00742 Homoserine dehydrogenase CFI11_08215 PF01842 ACT domain CFI11_08235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_08235 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFI11_08260 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFI11_08260 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFI11_08270 PF01266 FAD dependent oxidoreductase CFI11_08275 PF04267 Sarcosine oxidase, delta subunit family CFI11_08280 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_08280 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_08280 PF17806 Sarcosine oxidase A3 domain CFI11_08280 PF01571 Aminomethyltransferase folate-binding domain CFI11_08295 PF01807 CHC2 zinc finger CFI11_08295 PF08275 DNA primase catalytic core, N-terminal domain CFI11_08295 PF13662 Toprim domain CFI11_08295 PF08278 DNA primase DnaG DnaB-binding CFI11_08295 PF10410 DnaB-helicase binding domain of primase CFI11_08300 PF03979 Sigma-70 factor, region 1.1 CFI11_08300 PF00140 Sigma-70 factor, region 1.2 CFI11_08300 PF04542 Sigma-70 region 2 CFI11_08300 PF04539 Sigma-70 region 3 CFI11_08300 PF04546 Sigma-70, non-essential region CFI11_08300 PF04545 Sigma-70, region 4 CFI11_08315 PF01894 Uncharacterised protein family UPF0047 CFI11_08320 PF03477 ATP cone domain CFI11_08325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFI11_08325 PF01872 RibD C-terminal domain CFI11_08330 PF05159 Capsule polysaccharide biosynthesis protein CFI11_08340 PF05159 Capsule polysaccharide biosynthesis protein CFI11_08345 PF00677 Lumazine binding domain CFI11_08355 PF00925 GTP cyclohydrolase II CFI11_08355 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CFI11_08360 PF00885 6,7-dimethyl-8-ribityllumazine synthase CFI11_08365 PF01029 NusB family CFI11_08385 PF00364 Biotin-requiring enzyme CFI11_08385 PF00682 HMGL-like CFI11_08385 PF02785 Biotin carboxylase C-terminal domain CFI11_08385 PF02436 Conserved carboxylase domain CFI11_08385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFI11_08385 PF00289 Biotin carboxylase, N-terminal domain CFI11_08390 PF01070 FMN-dependent dehydrogenase CFI11_08395 PF13361 UvrD-like helicase C-terminal domain CFI11_08395 PF00580 UvrD/REP helicase N-terminal domain CFI11_08410 PF02381 MraZ protein, putative antitoxin-like CFI11_08415 PF01795 MraW methylase family CFI11_08425 PF00905 Penicillin binding protein transpeptidase domain CFI11_08425 PF03717 Penicillin-binding Protein dimerisation domain CFI11_08430 PF02875 Mur ligase family, glutamate ligase domain CFI11_08430 PF01225 Mur ligase family, catalytic domain CFI11_08430 PF08245 Mur ligase middle domain CFI11_08435 PF01225 Mur ligase family, catalytic domain CFI11_08435 PF02875 Mur ligase family, glutamate ligase domain CFI11_08435 PF08245 Mur ligase middle domain CFI11_08440 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CFI11_08440 PF00953 Glycosyl transferase family 4 CFI11_08455 PF02875 Mur ligase family, glutamate ligase domain CFI11_08455 PF08245 Mur ligase middle domain CFI11_08465 PF01098 Cell cycle protein CFI11_08470 PF03033 Glycosyltransferase family 28 N-terminal domain CFI11_08470 PF04101 Glycosyltransferase family 28 C-terminal domain CFI11_08475 PF02875 Mur ligase family, glutamate ligase domain CFI11_08475 PF01225 Mur ligase family, catalytic domain CFI11_08475 PF08245 Mur ligase middle domain CFI11_08485 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CFI11_08485 PF01565 FAD binding domain CFI11_08490 PF01820 D-ala D-ala ligase N-terminus CFI11_08490 PF07478 D-ala D-ala ligase C-terminus CFI11_08495 PF03799 Cell division protein FtsQ CFI11_08500 PF02491 SHS2 domain inserted in FTSA CFI11_08505 PF00091 Tubulin/FtsZ family, GTPase domain CFI11_08505 PF12327 FtsZ family, C-terminal domain CFI11_08510 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CFI11_08515 PF13525 Outer membrane lipoprotein CFI11_08520 PF02463 RecF/RecN/SMC N terminal domain CFI11_08525 PF00654 Voltage gated chloride channel CFI11_08540 PF11775 Cobalamin biosynthesis protein CobT VWA domain CFI11_08540 PF06213 Cobalamin biosynthesis protein CobT CFI11_08555 PF12556 Cobaltochelatase CobS subunit N terminal CFI11_08555 PF08406 CbbQ/NirQ/NorQ C-terminal CFI11_08555 PF07728 AAA domain (dynein-related subfamily) CFI11_08560 PF00226 DnaJ domain CFI11_08560 PF01556 DnaJ C terminal domain CFI11_08560 PF00684 DnaJ central domain CFI11_08585 PF13545 Crp-like helix-turn-helix domain CFI11_08585 PF00027 Cyclic nucleotide-binding domain CFI11_08590 PF00596 Class II Aldolase and Adducin N-terminal domain CFI11_08600 PF02637 GatB domain CFI11_08600 PF02934 GatB/GatE catalytic domain CFI11_08610 PF12697 Alpha/beta hydrolase family CFI11_08625 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CFI11_08625 PF01433 Peptidase family M1 domain CFI11_08625 PF11940 Domain of unknown function (DUF3458) Ig-like fold CFI11_08635 PF00875 DNA photolyase CFI11_08635 PF03441 FAD binding domain of DNA photolyase CFI11_08650 PF01274 Malate synthase CFI11_08660 PF07722 Peptidase C26 CFI11_08665 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_08665 PF00034 Cytochrome c CFI11_08665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFI11_08670 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_08670 PF01799 [2Fe-2S] binding domain CFI11_08675 PF08361 MAATS-type transcriptional repressor, C-terminal region CFI11_08675 PF00440 Bacterial regulatory proteins, tetR family CFI11_08680 PF03301 Tryptophan 2,3-dioxygenase CFI11_08690 PF00266 Aminotransferase class-V CFI11_08700 PF00106 short chain dehydrogenase CFI11_08715 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CFI11_08715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CFI11_08715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CFI11_08720 PF02233 NAD(P) transhydrogenase beta subunit CFI11_08730 PF13411 MerR HTH family regulatory protein CFI11_08735 PF02627 Carboxymuconolactone decarboxylase family CFI11_08745 PF04143 Sulphur transport CFI11_08755 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_08755 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_08760 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_08765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_08770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_08770 PF00005 ABC transporter CFI11_08775 PF01546 Peptidase family M20/M25/M40 CFI11_08775 PF07687 Peptidase dimerisation domain CFI11_08780 PF01546 Peptidase family M20/M25/M40 CFI11_08780 PF07687 Peptidase dimerisation domain CFI11_08785 PF01546 Peptidase family M20/M25/M40 CFI11_08785 PF07687 Peptidase dimerisation domain CFI11_08790 PF00534 Glycosyl transferases group 1 CFI11_08795 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CFI11_08800 PF06463 Molybdenum Cofactor Synthesis C CFI11_08800 PF04055 Radical SAM superfamily CFI11_08825 PF01380 SIS domain CFI11_08830 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_08830 PF12804 MobA-like NTP transferase domain CFI11_08835 PF13419 Haloacid dehalogenase-like hydrolase CFI11_08840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFI11_08850 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_08850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_08850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_08855 PF03922 OmpW family CFI11_08860 PF01039 Carboxyl transferase domain CFI11_08870 PF02785 Biotin carboxylase C-terminal domain CFI11_08870 PF00289 Biotin carboxylase, N-terminal domain CFI11_08870 PF00364 Biotin-requiring enzyme CFI11_08870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFI11_08875 PF00682 HMGL-like CFI11_08880 PF00378 Enoyl-CoA hydratase/isomerase CFI11_08885 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CFI11_08890 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFI11_08900 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CFI11_08905 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CFI11_08915 PF00829 Ribosomal prokaryotic L21 protein CFI11_08920 PF17272 Family of unknown function (DUF5337) CFI11_08925 PF10531 SLBB domain CFI11_08925 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFI11_08925 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CFI11_08955 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CFI11_08955 PF00384 Molybdopterin oxidoreductase CFI11_08955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFI11_08965 PF00146 NADH dehydrogenase CFI11_08975 PF12838 4Fe-4S dicluster domain CFI11_08985 PF02627 Carboxymuconolactone decarboxylase family CFI11_08990 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CFI11_08995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFI11_09000 PF00361 Proton-conducting membrane transporter CFI11_09000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFI11_09005 PF00361 Proton-conducting membrane transporter CFI11_09010 PF00361 Proton-conducting membrane transporter CFI11_09015 PF02237 Biotin protein ligase C terminal domain CFI11_09015 PF03099 Biotin/lipoate A/B protein ligase family CFI11_09020 PF03309 Type III pantothenate kinase CFI11_09025 PF12706 Beta-lactamase superfamily domain CFI11_09025 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CFI11_09025 PF17770 Ribonuclease J C-terminal domain CFI11_09030 PF00270 DEAD/DEAH box helicase CFI11_09030 PF00271 Helicase conserved C-terminal domain CFI11_09045 PF16658 Class II release factor RF3, C-terminal domain CFI11_09045 PF03144 Elongation factor Tu domain 2 CFI11_09045 PF00009 Elongation factor Tu GTP binding domain CFI11_09060 PF18364 Molybdopterin oxidoreductase N-terminal domain CFI11_09060 PF00384 Molybdopterin oxidoreductase CFI11_09060 PF01568 Molydopterin dinucleotide binding domain CFI11_09075 PF08713 DNA alkylation repair enzyme CFI11_09080 PF08402 TOBE domain CFI11_09080 PF00005 ABC transporter CFI11_09085 PF01209 ubiE/COQ5 methyltransferase family CFI11_09090 PF03466 LysR substrate binding domain CFI11_09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_09095 PF08279 HTH domain CFI11_09095 PF13280 WYL domain CFI11_09105 PF02416 mttA/Hcf106 family CFI11_09110 PF02416 mttA/Hcf106 family CFI11_09115 PF00902 Sec-independent protein translocase protein (TatC) CFI11_09135 PF01551 Peptidase family M23 CFI11_09135 PF01476 LysM domain CFI11_09145 PF01975 Survival protein SurE CFI11_09150 PF00106 short chain dehydrogenase CFI11_09160 PF13537 Glutamine amidotransferase domain CFI11_09160 PF00156 Phosphoribosyl transferase domain CFI11_09170 PF18073 Rubredoxin metal binding domain CFI11_09170 PF06745 KaiC CFI11_09185 PF08502 LeuA allosteric (dimerisation) domain CFI11_09185 PF00682 HMGL-like CFI11_09195 PF00005 ABC transporter CFI11_09200 PF02405 Permease MlaE CFI11_09205 PF00842 Alanine racemase, C-terminal domain CFI11_09205 PF01168 Alanine racemase, N-terminal domain CFI11_09215 PF00772 DnaB-like helicase N terminal domain CFI11_09215 PF03796 DnaB-like helicase C terminal domain CFI11_09220 PF00156 Phosphoribosyl transferase domain CFI11_09225 PF01979 Amidohydrolase family CFI11_09265 PF02625 XdhC and CoxI family CFI11_09265 PF13478 XdhC Rossmann domain CFI11_09290 PF07690 Major Facilitator Superfamily CFI11_09300 PF00733 Asparagine synthase CFI11_09300 PF13537 Glutamine amidotransferase domain CFI11_09310 PF01619 Proline dehydrogenase CFI11_09320 PF05198 Translation initiation factor IF-3, N-terminal domain CFI11_09320 PF00707 Translation initiation factor IF-3, C-terminal domain CFI11_09330 PF07690 Major Facilitator Superfamily CFI11_09335 PF00970 Oxidoreductase FAD-binding domain CFI11_09335 PF00175 Oxidoreductase NAD-binding domain CFI11_09345 PF01507 Phosphoadenosine phosphosulfate reductase family CFI11_09350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFI11_09350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFI11_09360 PF10414 Sirohaem synthase dimerisation region CFI11_09360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_09365 PF01037 Lrp/AsnC ligand binding domain CFI11_09370 PF00067 Cytochrome P450 CFI11_09375 PF00512 His Kinase A (phospho-acceptor) domain CFI11_09375 PF02743 Cache domain CFI11_09375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_09380 PF00158 Sigma-54 interaction domain CFI11_09380 PF02954 Bacterial regulatory protein, Fis family CFI11_09380 PF00072 Response regulator receiver domain CFI11_09385 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_09390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CFI11_09395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_09400 PF00121 Triosephosphate isomerase CFI11_09410 PF01521 Iron-sulphur cluster biosynthesis CFI11_09420 PF01883 Iron-sulfur cluster assembly protein CFI11_09425 PF01702 Queuine tRNA-ribosyltransferase CFI11_09430 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_09430 PF05362 Lon protease (S16) C-terminal proteolytic domain CFI11_09430 PF02190 ATP-dependent protease La (LON) substrate-binding domain CFI11_09445 PF00300 Histidine phosphatase superfamily (branch 1) CFI11_09450 PF05726 Pirin C-terminal cupin domain CFI11_09450 PF02678 Pirin CFI11_09475 PF00561 alpha/beta hydrolase fold CFI11_09485 PF01266 FAD dependent oxidoreductase CFI11_09490 PF00155 Aminotransferase class I and II CFI11_09500 PF04551 GcpE protein CFI11_09520 PF11741 AMIN domain CFI11_09520 PF01520 N-acetylmuramoyl-L-alanine amidase CFI11_09525 PF17092 Penicillin-binding protein OB-like domain CFI11_09525 PF00905 Penicillin binding protein transpeptidase domain CFI11_09525 PF00912 Transglycosylase CFI11_09535 PF03462 PCRF domain CFI11_09535 PF00472 RF-1 domain CFI11_09540 PF01425 Amidase CFI11_09555 PF00355 Rieske [2Fe-2S] domain CFI11_09555 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CFI11_09570 PF10369 Small subunit of acetolactate synthase CFI11_09585 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_09585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_09585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_09595 PF00196 Bacterial regulatory proteins, luxR family CFI11_09595 PF00072 Response regulator receiver domain CFI11_09600 PF17200 Single Cache domain 2 CFI11_09600 PF07730 Histidine kinase CFI11_09605 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_09615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_09625 PF00795 Carbon-nitrogen hydrolase CFI11_09630 PF12833 Helix-turn-helix domain CFI11_09630 PF02311 AraC-like ligand binding domain CFI11_09655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_09660 PF04376 Arginine-tRNA-protein transferase, N terminus CFI11_09660 PF04377 Arginine-tRNA-protein transferase, C terminus CFI11_09760 PF10124 Mu-like prophage major head subunit gpT CFI11_09805 PF03237 Terminase-like family CFI11_09950 PF09299 Mu transposase, C-terminal CFI11_09950 PF02914 Bacteriophage Mu transposase CFI11_09950 PF09039 Mu DNA binding, I gamma subdomain CFI11_09950 PF02316 Mu DNA-binding domain CFI11_09990 PF08335 GlnD PII-uridylyltransferase CFI11_09990 PF03710 Glutamate-ammonia ligase adenylyltransferase CFI11_10000 PF10672 S-adenosylmethionine-dependent methyltransferase CFI11_10000 PF17785 PUA-like domain CFI11_10015 PF00067 Cytochrome P450 CFI11_10020 PF01037 Lrp/AsnC ligand binding domain CFI11_10050 PF03435 Saccharopine dehydrogenase NADP binding domain CFI11_10085 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_10085 PF07724 AAA domain (Cdc48 subfamily) CFI11_10085 PF02861 Clp amino terminal domain, pathogenicity island component CFI11_10085 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_10085 PF17871 AAA lid domain CFI11_10090 PF01258 Prokaryotic dksA/traR C4-type zinc finger CFI11_10095 PF01494 FAD binding domain CFI11_10120 PF01521 Iron-sulphur cluster biosynthesis CFI11_10125 PF01966 HD domain CFI11_10125 PF13286 Phosphohydrolase-associated domain CFI11_10130 PF03485 Arginyl tRNA synthetase N terminal domain CFI11_10130 PF05746 DALR anticodon binding domain CFI11_10130 PF00750 tRNA synthetases class I (R) CFI11_10140 PF00933 Glycosyl hydrolase family 3 N terminal domain CFI11_10145 PF02616 Segregation and condensation protein ScpA CFI11_10150 PF04079 Segregation and condensation complex subunit ScpB CFI11_10170 PF00692 dUTPase CFI11_10185 PF00216 Bacterial DNA-binding protein CFI11_10190 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFI11_10190 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFI11_10195 PF02504 Fatty acid synthesis protein CFI11_10200 PF01783 Ribosomal L32p protein family CFI11_10225 PF14602 Hexapeptide repeat of succinyl-transferase CFI11_10225 PF12464 Maltose acetyltransferase CFI11_10230 PF00106 short chain dehydrogenase CFI11_10245 PF00579 tRNA synthetases class I (W and Y) CFI11_10250 PF03702 Anhydro-N-acetylmuramic acid kinase CFI11_10280 PF03952 Enolase, N-terminal domain CFI11_10280 PF00113 Enolase, C-terminal TIM barrel domain CFI11_10285 PF00892 EamA-like transporter family CFI11_10295 PF01475 Ferric uptake regulator family CFI11_10300 PF00270 DEAD/DEAH box helicase CFI11_10300 PF00271 Helicase conserved C-terminal domain CFI11_10315 PF00892 EamA-like transporter family CFI11_10320 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CFI11_10330 PF01156 Inosine-uridine preferring nucleoside hydrolase CFI11_10345 PF03819 MazG nucleotide pyrophosphohydrolase domain CFI11_10350 PF01546 Peptidase family M20/M25/M40 CFI11_10350 PF07687 Peptidase dimerisation domain CFI11_10355 PF00491 Arginase family CFI11_10360 PF00491 Arginase family CFI11_10375 PF03462 PCRF domain CFI11_10375 PF00472 RF-1 domain CFI11_10380 PF17827 PrmC N-terminal domain CFI11_10380 PF05175 Methyltransferase small domain CFI11_10390 PF00398 Ribosomal RNA adenine dimethylase CFI11_10395 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CFI11_10405 PF04453 LPS transport system D CFI11_10405 PF03968 OstA-like protein CFI11_10420 PF00883 Cytosol aminopeptidase family, catalytic domain CFI11_10435 PF00005 ABC transporter CFI11_10435 PF12848 ABC transporter CFI11_10440 PF00334 Nucleoside diphosphate kinase CFI11_10455 PF01679 Proteolipid membrane potential modulator CFI11_10465 PF08281 Sigma-70, region 4 CFI11_10465 PF04542 Sigma-70 region 2 CFI11_10485 PF00155 Aminotransferase class I and II CFI11_10495 PF09190 DALR domain CFI11_10495 PF01406 tRNA synthetases class I (C) catalytic domain CFI11_10500 PF08502 LeuA allosteric (dimerisation) domain CFI11_10500 PF00682 HMGL-like CFI11_10510 PF07690 Major Facilitator Superfamily CFI11_10520 PF00561 alpha/beta hydrolase fold CFI11_10525 PF00849 RNA pseudouridylate synthase CFI11_10535 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFI11_10540 PF00491 Arginase family CFI11_10550 PF02600 Disulfide bond formation protein DsbB CFI11_10555 PF09335 SNARE associated Golgi protein CFI11_10570 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_10570 PF12804 MobA-like NTP transferase domain CFI11_10575 PF16350 FAD dependent oxidoreductase central domain CFI11_10575 PF01571 Aminomethyltransferase folate-binding domain CFI11_10575 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_10575 PF01266 FAD dependent oxidoreductase CFI11_10580 PF10011 Predicted membrane protein (DUF2254) CFI11_10585 PF16350 FAD dependent oxidoreductase central domain CFI11_10585 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_10585 PF01266 FAD dependent oxidoreductase CFI11_10585 PF01571 Aminomethyltransferase folate-binding domain CFI11_10595 PF00501 AMP-binding enzyme CFI11_10595 PF13193 AMP-binding enzyme C-terminal domain CFI11_10600 PF03471 Transporter associated domain CFI11_10600 PF01595 Cyclin M transmembrane N-terminal domain CFI11_10600 PF00571 CBS domain CFI11_10605 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_10605 PF00589 Phage integrase family CFI11_10615 PF01202 Shikimate kinase CFI11_10620 PF01761 3-dehydroquinate synthase CFI11_10630 PF00436 Single-strand binding protein family CFI11_10635 PF01464 Transglycosylase SLT domain CFI11_10635 PF01551 Peptidase family M23 CFI11_10635 PF10145 Phage-related minor tail protein CFI11_10655 PF00005 ABC transporter CFI11_10655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_10665 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_10685 PF00696 Amino acid kinase family CFI11_10690 PF01765 Ribosome recycling factor CFI11_10695 PF01255 Putative undecaprenyl diphosphate synthase CFI11_10705 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CFI11_10705 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CFI11_10705 PF13288 DXP reductoisomerase C-terminal domain CFI11_10710 PF02163 Peptidase family M50 CFI11_10710 PF17820 PDZ domain CFI11_10715 PF07244 Surface antigen variable number repeat CFI11_10715 PF01103 Surface antigen CFI11_10725 PF07977 FabA-like domain CFI11_10730 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CFI11_10730 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_10735 PF06230 LpxI C-terminal domain CFI11_10735 PF17930 LpxI N-terminal domain CFI11_10740 PF02684 Lipid-A-disaccharide synthetase CFI11_10760 PF13302 Acetyltransferase (GNAT) domain CFI11_10775 PF00486 Transcriptional regulatory protein, C terminal CFI11_10775 PF00072 Response regulator receiver domain CFI11_10780 PF03120 NAD-dependent DNA ligase OB-fold domain CFI11_10780 PF12826 Helix-hairpin-helix motif CFI11_10780 PF01653 NAD-dependent DNA ligase adenylation domain CFI11_10780 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CFI11_10780 PF00533 BRCA1 C Terminus (BRCT) domain CFI11_10785 PF00270 DEAD/DEAH box helicase CFI11_10785 PF00271 Helicase conserved C-terminal domain CFI11_10785 PF17191 RecG wedge domain CFI11_10795 PF01502 Phosphoribosyl-AMP cyclohydrolase CFI11_10800 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFI11_10810 PF01134 Glucose inhibited division protein A CFI11_10820 PF00378 Enoyl-CoA hydratase/isomerase CFI11_10835 PF00155 Aminotransferase class I and II CFI11_10835 PF00392 Bacterial regulatory proteins, gntR family CFI11_10840 PF00572 Ribosomal protein L13 CFI11_10845 PF00380 Ribosomal protein S9/S16 CFI11_10855 PF13977 BetI-type transcriptional repressor, C-terminal CFI11_10855 PF00440 Bacterial regulatory proteins, tetR family CFI11_10860 PF03976 Polyphosphate kinase 2 (PPK2) CFI11_10865 PF00561 alpha/beta hydrolase fold CFI11_10870 PF04204 Homoserine O-succinyltransferase CFI11_10890 PF00892 EamA-like transporter family CFI11_10895 PF00958 GMP synthase C terminal domain CFI11_10895 PF00117 Glutamine amidotransferase class-I CFI11_10900 PF06253 Trimethylamine methyltransferase (MTTB) CFI11_10920 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CFI11_10920 PF04055 Radical SAM superfamily CFI11_10930 PF03364 Polyketide cyclase / dehydrase and lipid transport CFI11_10940 PF02464 Competence-damaged protein CFI11_10945 PF04608 Phosphatidylglycerophosphatase A CFI11_10950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CFI11_10950 PF02542 YgbB family CFI11_10955 PF01207 Dihydrouridine synthase (Dus) CFI11_10960 PF00512 His Kinase A (phospho-acceptor) domain CFI11_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_10965 PF14532 Sigma-54 interaction domain CFI11_10965 PF00072 Response regulator receiver domain CFI11_10965 PF02954 Bacterial regulatory protein, Fis family CFI11_10970 PF00989 PAS fold CFI11_10970 PF00512 His Kinase A (phospho-acceptor) domain CFI11_10970 PF00672 HAMP domain CFI11_10970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_10975 PF00158 Sigma-54 interaction domain CFI11_10975 PF02954 Bacterial regulatory protein, Fis family CFI11_10975 PF00072 Response regulator receiver domain CFI11_10985 PF02080 TrkA-C domain CFI11_10985 PF02254 TrkA-N domain CFI11_10990 PF02386 Cation transport protein CFI11_10995 PF17209 Hfq protein CFI11_11000 PF13167 GTP-binding GTPase N-terminal CFI11_11000 PF16360 GTP-binding GTPase Middle Region CFI11_11000 PF01926 50S ribosome-binding GTPase CFI11_11010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFI11_11010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_11025 PF00490 Delta-aminolevulinic acid dehydratase CFI11_11035 PF00271 Helicase conserved C-terminal domain CFI11_11035 PF17757 UvrB interaction domain CFI11_11035 PF03461 TRCF domain CFI11_11035 PF02559 CarD-like/TRCF domain CFI11_11035 PF00270 DEAD/DEAH box helicase CFI11_11045 PF07690 Major Facilitator Superfamily CFI11_11050 PF00027 Cyclic nucleotide-binding domain CFI11_11050 PF00520 Ion transport protein CFI11_11060 PF13193 AMP-binding enzyme C-terminal domain CFI11_11060 PF00501 AMP-binding enzyme CFI11_11075 PF00230 Major intrinsic protein CFI11_11090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_11115 PF04227 Indigoidine synthase A like protein CFI11_11135 PF04349 Periplasmic glucan biosynthesis protein, MdoG CFI11_11140 PF02581 Thiamine monophosphate synthase CFI11_11150 PF00588 SpoU rRNA Methylase family CFI11_11155 PF02628 Cytochrome oxidase assembly protein CFI11_11160 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CFI11_11170 PF03466 LysR substrate binding domain CFI11_11170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_11180 PF00521 DNA gyrase/topoisomerase IV, subunit A CFI11_11180 PF03989 DNA gyrase C-terminal domain, beta-propeller CFI11_11185 PF06233 Usg-like family CFI11_11190 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFI11_11190 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFI11_11195 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CFI11_11200 PF00342 Phosphoglucose isomerase CFI11_11205 PF13193 AMP-binding enzyme C-terminal domain CFI11_11205 PF00501 AMP-binding enzyme CFI11_11230 PF00571 CBS domain CFI11_11230 PF00478 IMP dehydrogenase / GMP reductase domain CFI11_11235 PF01029 NusB family CFI11_11235 PF01189 16S rRNA methyltransferase RsmB/F CFI11_11240 PF00072 Response regulator receiver domain CFI11_11240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_11240 PF00512 His Kinase A (phospho-acceptor) domain CFI11_11240 PF08448 PAS fold CFI11_11240 PF13188 PAS domain CFI11_11250 PF00154 recA bacterial DNA recombination protein CFI11_11255 PF02272 DHHA1 domain CFI11_11255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFI11_11255 PF01411 tRNA synthetases class II (A) CFI11_11275 PF00180 Isocitrate/isopropylmalate dehydrogenase CFI11_11290 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CFI11_11300 PF00266 Aminotransferase class-V CFI11_11305 PF01458 Uncharacterized protein family (UPF0051) CFI11_11320 PF01906 Putative heavy-metal-binding CFI11_11325 PF00005 ABC transporter CFI11_11330 PF01458 Uncharacterized protein family (UPF0051) CFI11_11345 PF00266 Aminotransferase class-V CFI11_11355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_11355 PF03466 LysR substrate binding domain CFI11_11365 PF07690 Major Facilitator Superfamily CFI11_11375 PF06441 Epoxide hydrolase N terminus CFI11_11380 PF03466 LysR substrate binding domain CFI11_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_11390 PF03743 Bacterial conjugation TrbI-like protein CFI11_11400 PF04335 VirB8 protein CFI11_11405 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CFI11_11420 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CFI11_11435 PF00437 Type II/IV secretion system protein CFI11_11440 PF03466 LysR substrate binding domain CFI11_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_11465 PF02534 Type IV secretory system Conjugative DNA transfer CFI11_11475 PF01464 Transglycosylase SLT domain CFI11_11480 PF10502 Signal peptidase, peptidase S26 CFI11_11525 PF05284 Protein of unknown function (DUF736) CFI11_11585 PF03880 DbpA RNA binding domain CFI11_11585 PF00270 DEAD/DEAH box helicase CFI11_11585 PF12343 Cold shock protein DEAD box A CFI11_11585 PF00271 Helicase conserved C-terminal domain CFI11_11605 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_11605 PF00589 Phage integrase family CFI11_11610 PF05951 Bacterial protein of unknown function (DUF882) CFI11_11615 PF01471 Putative peptidoglycan binding domain CFI11_11615 PF03734 L,D-transpeptidase catalytic domain CFI11_11620 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CFI11_11620 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_11625 PF00550 Phosphopantetheine attachment site CFI11_11630 PF02801 Beta-ketoacyl synthase, C-terminal domain CFI11_11630 PF00109 Beta-ketoacyl synthase, N-terminal domain CFI11_11640 PF05872 Bacterial protein of unknown function (DUF853) CFI11_11670 PF02653 Branched-chain amino acid transport system / permease component CFI11_11680 PF00005 ABC transporter CFI11_11685 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_11685 PF00005 ABC transporter CFI11_11695 PF07995 Glucose / Sorbosone dehydrogenase CFI11_11705 PF01965 DJ-1/PfpI family CFI11_11705 PF12833 Helix-turn-helix domain CFI11_11710 PF01474 Class-II DAHP synthetase family CFI11_11720 PF08340 Domain of unknown function (DUF1732) CFI11_11720 PF03755 YicC-like family, N-terminal region CFI11_11725 PF00625 Guanylate kinase CFI11_11730 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_11735 PF01053 Cys/Met metabolism PLP-dependent enzyme CFI11_11740 PF16736 Single Cache-like CFI11_11740 PF00512 His Kinase A (phospho-acceptor) domain CFI11_11740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_11740 PF00989 PAS fold CFI11_11750 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_11755 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_11760 PF00005 ABC transporter CFI11_11765 PF01895 PhoU domain CFI11_11770 PF00072 Response regulator receiver domain CFI11_11770 PF00486 Transcriptional regulatory protein, C terminal CFI11_11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_11775 PF03466 LysR substrate binding domain CFI11_11780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_11780 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_11780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_11785 PF02779 Transketolase, pyrimidine binding domain CFI11_11785 PF02780 Transketolase, C-terminal domain CFI11_11790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_11790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_11790 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_11795 PF02515 CoA-transferase family III CFI11_11810 PF04349 Periplasmic glucan biosynthesis protein, MdoG CFI11_11815 PF13632 Glycosyl transferase family group 2 CFI11_11830 PF17243 POTRA domain TamA domain 1 CFI11_11830 PF07244 Surface antigen variable number repeat CFI11_11830 PF01103 Surface antigen CFI11_11845 PF13193 AMP-binding enzyme C-terminal domain CFI11_11845 PF00501 AMP-binding enzyme CFI11_11850 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_11850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_11850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_11875 PF13193 AMP-binding enzyme C-terminal domain CFI11_11875 PF00501 AMP-binding enzyme CFI11_11880 PF00144 Beta-lactamase CFI11_11885 PF00378 Enoyl-CoA hydratase/isomerase CFI11_11890 PF00043 Glutathione S-transferase, C-terminal domain CFI11_11890 PF02798 Glutathione S-transferase, N-terminal domain CFI11_11895 PF00106 short chain dehydrogenase CFI11_11900 PF01323 DSBA-like thioredoxin domain CFI11_11925 PF00106 short chain dehydrogenase CFI11_11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_11930 PF03466 LysR substrate binding domain CFI11_11945 PF01810 LysE type translocator CFI11_11960 PF00005 ABC transporter CFI11_11965 PF00005 ABC transporter CFI11_11965 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_11975 PF02653 Branched-chain amino acid transport system / permease component CFI11_11985 PF09339 IclR helix-turn-helix domain CFI11_12005 PF02803 Thiolase, C-terminal domain CFI11_12005 PF00108 Thiolase, N-terminal domain CFI11_12010 PF00106 short chain dehydrogenase CFI11_12020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_12020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_12025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_12025 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_12025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_12030 PF16197 Ketoacyl-synthetase C-terminal extension CFI11_12030 PF00109 Beta-ketoacyl synthase, N-terminal domain CFI11_12030 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_12030 PF00698 Acyl transferase domain CFI11_12030 PF14765 Polyketide synthase dehydratase CFI11_12030 PF00550 Phosphopantetheine attachment site CFI11_12030 PF08659 KR domain CFI11_12030 PF00107 Zinc-binding dehydrogenase CFI11_12030 PF02801 Beta-ketoacyl synthase, C-terminal domain CFI11_12040 PF16884 N-terminal domain of oxidoreductase CFI11_12040 PF00107 Zinc-binding dehydrogenase CFI11_12045 PF01575 MaoC like domain CFI11_12050 PF01220 Dehydroquinase class II CFI11_12055 PF00196 Bacterial regulatory proteins, luxR family CFI11_12055 PF03472 Autoinducer binding domain CFI11_12065 PF00889 Elongation factor TS CFI11_12070 PF00318 Ribosomal protein S2 CFI11_12090 PF10090 Histidine phosphotransferase C-terminal domain CFI11_12095 PF00171 Aldehyde dehydrogenase family CFI11_12100 PF00696 Amino acid kinase family CFI11_12100 PF01472 PUA domain CFI11_12105 PF01018 GTP1/OBG CFI11_12105 PF01926 50S ribosome-binding GTPase CFI11_12120 PF01810 LysE type translocator CFI11_12135 PF01016 Ribosomal L27 protein CFI11_12140 PF00829 Ribosomal prokaryotic L21 protein CFI11_12170 PF09857 Putative toxin of bacterial toxin-antitoxin pair CFI11_12175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFI11_12175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFI11_12185 PF00534 Glycosyl transferases group 1 CFI11_12185 PF13439 Glycosyltransferase Family 4 CFI11_12190 PF01370 NAD dependent epimerase/dehydratase family CFI11_12205 PF02219 Methylenetetrahydrofolate reductase CFI11_12215 PF02541 Ppx/GppA phosphatase family CFI11_12220 PF01728 FtsJ-like methyltransferase CFI11_12240 PF00550 Phosphopantetheine attachment site CFI11_12240 PF02801 Beta-ketoacyl synthase, C-terminal domain CFI11_12240 PF00109 Beta-ketoacyl synthase, N-terminal domain CFI11_12240 PF16197 Ketoacyl-synthetase C-terminal extension CFI11_12240 PF00698 Acyl transferase domain CFI11_12240 PF00668 Condensation domain CFI11_12250 PF00550 Phosphopantetheine attachment site CFI11_12250 PF00668 Condensation domain CFI11_12250 PF13193 AMP-binding enzyme C-terminal domain CFI11_12250 PF00668 Condensation domain CFI11_12250 PF00975 Thioesterase domain CFI11_12250 PF13193 AMP-binding enzyme C-terminal domain CFI11_12250 PF00501 AMP-binding enzyme CFI11_12250 PF00501 AMP-binding enzyme CFI11_12250 PF00975 Thioesterase domain CFI11_12250 PF00550 Phosphopantetheine attachment site CFI11_12255 PF01648 4'-phosphopantetheinyl transferase superfamily CFI11_12255 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CFI11_12285 PF02397 Bacterial sugar transferase CFI11_12300 PF01494 FAD binding domain CFI11_12315 PF02653 Branched-chain amino acid transport system / permease component CFI11_12320 PF00005 ABC transporter CFI11_12330 PF00857 Isochorismatase family CFI11_12335 PF02538 Hydantoinase B/oxoprolinase CFI11_12340 PF05378 Hydantoinase/oxoprolinase N-terminal region CFI11_12340 PF01968 Hydantoinase/oxoprolinase CFI11_12350 PF02515 CoA-transferase family III CFI11_12355 PF00682 HMGL-like CFI11_12360 PF07729 FCD domain CFI11_12360 PF00392 Bacterial regulatory proteins, gntR family CFI11_12380 PF00005 ABC transporter CFI11_12380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_12385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_12385 PF00005 ABC transporter CFI11_12395 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_12400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_12415 PF05378 Hydantoinase/oxoprolinase N-terminal region CFI11_12415 PF01968 Hydantoinase/oxoprolinase CFI11_12435 PF02653 Branched-chain amino acid transport system / permease component CFI11_12445 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_12445 PF00005 ABC transporter CFI11_12450 PF00005 ABC transporter CFI11_12455 PF12802 MarR family CFI11_12465 PF01799 [2Fe-2S] binding domain CFI11_12465 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_12465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_12465 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFI11_12470 PF00037 4Fe-4S binding domain CFI11_12495 PF00440 Bacterial regulatory proteins, tetR family CFI11_12495 PF08359 YsiA-like protein, C-terminal region CFI11_12500 PF00144 Beta-lactamase CFI11_12505 PF02153 Prephenate dehydrogenase CFI11_12510 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CFI11_12510 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CFI11_12515 PF01063 Amino-transferase class IV CFI11_12525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_12530 PF01494 FAD binding domain CFI11_12555 PF13409 Glutathione S-transferase, N-terminal domain CFI11_12575 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_12580 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_12585 PF00005 ABC transporter CFI11_12585 PF08402 TOBE domain CFI11_12595 PF08220 DeoR-like helix-turn-helix domain CFI11_12595 PF00455 DeoR C terminal sensor domain CFI11_12630 PF01979 Amidohydrolase family CFI11_12640 PF12795 Mechanosensitive ion channel porin domain CFI11_12640 PF12794 Mechanosensitive ion channel inner membrane domain 1 CFI11_12640 PF00924 Mechanosensitive ion channel CFI11_12645 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_12645 PF00571 CBS domain CFI11_12650 PF00293 NUDIX domain CFI11_12665 PF03441 FAD binding domain of DNA photolyase CFI11_12665 PF00875 DNA photolyase CFI11_12670 PF00266 Aminotransferase class-V CFI11_12675 PF02028 BCCT, betaine/carnitine/choline family transporter CFI11_12680 PF00107 Zinc-binding dehydrogenase CFI11_12685 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_12685 PF01571 Aminomethyltransferase folate-binding domain CFI11_12705 PF00392 Bacterial regulatory proteins, gntR family CFI11_12705 PF07729 FCD domain CFI11_12740 PF02417 Chromate transporter CFI11_12750 PF00206 Lyase CFI11_12750 PF10415 Fumarase C C-terminus CFI11_12770 PF00274 Fructose-bisphosphate aldolase class-I CFI11_12775 PF00067 Cytochrome P450 CFI11_12785 PF02683 Cytochrome C biogenesis protein transmembrane region CFI11_12790 PF01206 Sulfurtransferase TusA CFI11_12795 PF10150 Ribonuclease E/G family CFI11_12795 PF12111 Polyribonucleotide phosphorylase C terminal CFI11_12795 PF00575 S1 RNA binding domain CFI11_12810 PF02954 Bacterial regulatory protein, Fis family CFI11_12810 PF00072 Response regulator receiver domain CFI11_12810 PF00158 Sigma-54 interaction domain CFI11_12815 PF00512 His Kinase A (phospho-acceptor) domain CFI11_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_12815 PF02743 Cache domain CFI11_12825 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CFI11_12830 PF01259 SAICAR synthetase CFI11_12840 PF00152 tRNA synthetases class II (D, K and N) CFI11_12840 PF16995 Transmembrane region of lysyl-tRNA synthetase CFI11_12840 PF09924 Uncharacterised conserved protein (DUF2156) CFI11_12840 PF01336 OB-fold nucleic acid binding domain CFI11_12845 PF02574 Homocysteine S-methyltransferase CFI11_12845 PF02310 B12 binding domain CFI11_12845 PF02607 B12 binding domain CFI11_12845 PF02965 Vitamin B12 dependent methionine synthase, activation domain CFI11_12845 PF00809 Pterin binding enzyme CFI11_12850 PF04055 Radical SAM superfamily CFI11_12855 PF02310 B12 binding domain CFI11_12855 PF02607 B12 binding domain CFI11_12865 PF02657 Fe-S metabolism associated domain CFI11_12875 PF00570 HRDC domain CFI11_12875 PF01612 3'-5' exonuclease CFI11_12880 PF00551 Formyl transferase CFI11_12885 PF02769 AIR synthase related protein, C-terminal domain CFI11_12885 PF00586 AIR synthase related protein, N-terminal domain CFI11_12900 PF00512 His Kinase A (phospho-acceptor) domain CFI11_12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_12900 PF00672 HAMP domain CFI11_12905 PF00753 Metallo-beta-lactamase superfamily CFI11_12905 PF16123 Hydroxyacylglutathione hydrolase C-terminus CFI11_12920 PF02867 Ribonucleotide reductase, barrel domain CFI11_12920 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CFI11_12935 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFI11_12935 PF12833 Helix-turn-helix domain CFI11_12935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFI11_12935 PF02805 Metal binding domain of Ada CFI11_12975 PF13614 AAA domain CFI11_13000 PF00959 Phage lysozyme CFI11_13120 PF04860 Phage portal protein CFI11_13200 PF13356 Arm DNA-binding domain CFI11_13200 PF00589 Phage integrase family CFI11_13270 PF00313 'Cold-shock' DNA-binding domain CFI11_13275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CFI11_13275 PF01243 Pyridoxamine 5'-phosphate oxidase CFI11_13285 PF01810 LysE type translocator CFI11_13290 PF01810 LysE type translocator CFI11_13295 PF00156 Phosphoribosyl transferase domain CFI11_13300 PF00155 Aminotransferase class I and II CFI11_13310 PF00425 chorismate binding enzyme CFI11_13310 PF04715 Anthranilate synthase component I, N terminal region CFI11_13325 PF00117 Glutamine amidotransferase class-I CFI11_13330 PF02885 Glycosyl transferase family, helical bundle domain CFI11_13330 PF00591 Glycosyl transferase family, a/b domain CFI11_13335 PF00218 Indole-3-glycerol phosphate synthase CFI11_13340 PF01967 MoaC family CFI11_13345 PF03453 MoeA N-terminal region (domain I and II) CFI11_13345 PF00994 Probable molybdopterin binding domain CFI11_13345 PF03454 MoeA C-terminal region (domain IV) CFI11_13350 PF00717 Peptidase S24-like CFI11_13350 PF01726 LexA DNA binding domain CFI11_13355 PF03772 Competence protein CFI11_13355 PF13567 Domain of unknown function (DUF4131) CFI11_13355 PF00753 Metallo-beta-lactamase superfamily CFI11_13360 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFI11_13365 PF00285 Citrate synthase, C-terminal domain CFI11_13395 PF00378 Enoyl-CoA hydratase/isomerase CFI11_13400 PF03918 Cytochrome C biogenesis protein CFI11_13405 PF01578 Cytochrome C assembly protein CFI11_13405 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CFI11_13420 PF03100 CcmE CFI11_13425 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFI11_13425 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFI11_13430 PF01177 Asp/Glu/Hydantoin racemase CFI11_13445 PF03466 LysR substrate binding domain CFI11_13445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_13460 PF00586 AIR synthase related protein, N-terminal domain CFI11_13460 PF02769 AIR synthase related protein, C-terminal domain CFI11_13460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CFI11_13475 PF00462 Glutaredoxin CFI11_13490 PF02779 Transketolase, pyrimidine binding domain CFI11_13490 PF02780 Transketolase, C-terminal domain CFI11_13490 PF00456 Transketolase, thiamine diphosphate binding domain CFI11_13500 PF05661 Protein of unknown function (DUF808) CFI11_13505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFI11_13505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFI11_13510 PF01467 Cytidylyltransferase-like CFI11_13520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_13520 PF03466 LysR substrate binding domain CFI11_13525 PF00171 Aldehyde dehydrogenase family CFI11_13540 PF03734 L,D-transpeptidase catalytic domain CFI11_13545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_13545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_13545 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_13550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_13550 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFI11_13560 PF10442 FIST C domain CFI11_13560 PF00990 Diguanylate cyclase, GGDEF domain CFI11_13560 PF08495 FIST N domain CFI11_13560 PF00563 EAL domain CFI11_13570 PF17755 UvrA DNA-binding domain CFI11_13570 PF17760 UvrA interaction domain CFI11_13570 PF00005 ABC transporter CFI11_13580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFI11_13580 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_13595 PF02547 Queuosine biosynthesis protein CFI11_13605 PF00578 AhpC/TSA family CFI11_13610 PF04305 Protein of unknown function (DUF455) CFI11_13615 PF01551 Peptidase family M23 CFI11_13625 PF07690 Major Facilitator Superfamily CFI11_13635 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFI11_13640 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFI11_13645 PF00162 Phosphoglycerate kinase CFI11_13650 PF04977 Septum formation initiator CFI11_13655 PF00676 Dehydrogenase E1 component CFI11_13660 PF02780 Transketolase, C-terminal domain CFI11_13660 PF02779 Transketolase, pyrimidine binding domain CFI11_13660 PF00364 Biotin-requiring enzyme CFI11_13665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFI11_13665 PF02817 e3 binding domain CFI11_13665 PF00364 Biotin-requiring enzyme CFI11_13670 PF06426 Serine acetyltransferase, N-terminal CFI11_13670 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_13750 PF04860 Phage portal protein CFI11_13765 PF02618 YceG-like family CFI11_13770 PF00109 Beta-ketoacyl synthase, N-terminal domain CFI11_13770 PF02801 Beta-ketoacyl synthase, C-terminal domain CFI11_13780 PF00977 Histidine biosynthesis protein CFI11_13790 PF00550 Phosphopantetheine attachment site CFI11_13800 PF00698 Acyl transferase domain CFI11_13805 PF01292 Prokaryotic cytochrome b561 CFI11_13810 PF04264 YceI-like domain CFI11_13820 PF01250 Ribosomal protein S6 CFI11_13825 PF01084 Ribosomal protein S18 CFI11_13830 PF01281 Ribosomal protein L9, N-terminal domain CFI11_13830 PF03948 Ribosomal protein L9, C-terminal domain CFI11_13835 PF13443 Cro/C1-type HTH DNA-binding domain CFI11_13860 PF02872 5'-nucleotidase, C-terminal domain CFI11_13860 PF00149 Calcineurin-like phosphoesterase CFI11_13865 PF05697 Bacterial trigger factor protein (TF) CFI11_13865 PF05698 Bacterial trigger factor protein (TF) C-terminus CFI11_13865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFI11_13880 PF00873 AcrB/AcrD/AcrF family CFI11_13920 PF00665 Integrase core domain CFI11_13945 PF03389 MobA/MobL family CFI11_13945 PF01443 Viral (Superfamily 1) RNA helicase CFI11_13945 PF17841 BID domain of Bartonella effector protein (Bep) CFI11_13955 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CFI11_13965 PF01555 DNA methylase CFI11_13975 PF00816 H-NS histone family CFI11_14010 PF07943 Penicillin-binding protein 5, C-terminal domain CFI11_14010 PF00768 D-alanyl-D-alanine carboxypeptidase CFI11_14035 PF08379 Bacterial transglutaminase-like N-terminal region CFI11_14035 PF01841 Transglutaminase-like superfamily CFI11_14045 PF00270 DEAD/DEAH box helicase CFI11_14045 PF00271 Helicase conserved C-terminal domain CFI11_14050 PF00313 'Cold-shock' DNA-binding domain CFI11_14070 PF02525 Flavodoxin-like fold CFI11_14080 PF07724 AAA domain (Cdc48 subfamily) CFI11_14080 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_14080 PF06689 ClpX C4-type zinc finger CFI11_14090 PF01965 DJ-1/PfpI family CFI11_14185 PF03099 Biotin/lipoate A/B protein ligase family CFI11_14200 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFI11_14220 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CFI11_14220 PF00117 Glutamine amidotransferase class-I CFI11_14230 PF00392 Bacterial regulatory proteins, gntR family CFI11_14230 PF07729 FCD domain CFI11_14245 PF01494 FAD binding domain CFI11_14260 PF13404 AsnC-type helix-turn-helix domain CFI11_14260 PF01037 Lrp/AsnC ligand binding domain CFI11_14270 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CFI11_14270 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CFI11_14280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFI11_14280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFI11_14280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFI11_14280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFI11_14285 PF00809 Pterin binding enzyme CFI11_14290 PF02152 Dihydroneopterin aldolase CFI11_14295 PF01471 Putative peptidoglycan binding domain CFI11_14295 PF07486 Cell Wall Hydrolase CFI11_14300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CFI11_14300 PF02896 PEP-utilising enzyme, TIM barrel domain CFI11_14300 PF00391 PEP-utilising enzyme, mobile domain CFI11_14305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_14320 PF16177 Acetyl-coenzyme A synthetase N-terminus CFI11_14320 PF00501 AMP-binding enzyme CFI11_14320 PF13193 AMP-binding enzyme C-terminal domain CFI11_14325 PF05191 Adenylate kinase, active site lid CFI11_14335 PF00474 Sodium:solute symporter family CFI11_14340 PF00571 CBS domain CFI11_14340 PF00478 IMP dehydrogenase / GMP reductase domain CFI11_14350 PF00929 Exonuclease CFI11_14355 PF01613 Flavin reductase like domain CFI11_14370 PF10609 NUBPL iron-transfer P-loop NTPase CFI11_14370 PF01883 Iron-sulfur cluster assembly protein CFI11_14410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFI11_14410 PF01568 Molydopterin dinucleotide binding domain CFI11_14410 PF00384 Molybdopterin oxidoreductase CFI11_14415 PF13247 4Fe-4S dicluster domain CFI11_14430 PF00034 Cytochrome c CFI11_14440 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14445 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14450 PF00005 ABC transporter CFI11_14455 PF01979 Amidohydrolase family CFI11_14465 PF01546 Peptidase family M20/M25/M40 CFI11_14465 PF07687 Peptidase dimerisation domain CFI11_14470 PF08362 YcdC-like protein, C-terminal region CFI11_14470 PF00440 Bacterial regulatory proteins, tetR family CFI11_14480 PF01180 Dihydroorotate dehydrogenase CFI11_14485 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_14485 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFI11_14495 PF12849 PBP superfamily domain CFI11_14500 PF00005 ABC transporter CFI11_14505 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14525 PF01053 Cys/Met metabolism PLP-dependent enzyme CFI11_14530 PF04402 Protein of unknown function (DUF541) CFI11_14545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_14555 PF00999 Sodium/hydrogen exchanger family CFI11_14555 PF02254 TrkA-N domain CFI11_14560 PF02277 Phosphoribosyltransferase CFI11_14565 PF02654 Cobalamin-5-phosphate synthase CFI11_14570 PF02559 CarD-like/TRCF domain CFI11_14575 PF00037 4Fe-4S binding domain CFI11_14575 PF11953 Domain of unknown function (DUF3470) CFI11_14580 PF01479 S4 domain CFI11_14610 PF04679 ATP dependent DNA ligase C terminal region CFI11_14610 PF01068 ATP dependent DNA ligase domain CFI11_14610 PF04675 DNA ligase N terminus CFI11_14635 PF01244 Membrane dipeptidase (Peptidase family M19) CFI11_14640 PF00140 Sigma-70 factor, region 1.2 CFI11_14640 PF04542 Sigma-70 region 2 CFI11_14640 PF04545 Sigma-70, region 4 CFI11_14645 PF00849 RNA pseudouridylate synthase CFI11_14660 PF00583 Acetyltransferase (GNAT) family CFI11_14700 PF00005 ABC transporter CFI11_14705 PF13193 AMP-binding enzyme C-terminal domain CFI11_14705 PF16177 Acetyl-coenzyme A synthetase N-terminus CFI11_14705 PF00501 AMP-binding enzyme CFI11_14720 PF01968 Hydantoinase/oxoprolinase CFI11_14720 PF05378 Hydantoinase/oxoprolinase N-terminal region CFI11_14725 PF01266 FAD dependent oxidoreductase CFI11_14735 PF09339 IclR helix-turn-helix domain CFI11_14735 PF01614 Bacterial transcriptional regulator CFI11_14740 PF01568 Molydopterin dinucleotide binding domain CFI11_14740 PF00384 Molybdopterin oxidoreductase CFI11_14745 PF01053 Cys/Met metabolism PLP-dependent enzyme CFI11_14755 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14760 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14765 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFI11_14775 PF07724 AAA domain (Cdc48 subfamily) CFI11_14775 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_14775 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_14775 PF17871 AAA lid domain CFI11_14830 PF13677 Membrane MotB of proton-channel complex MotA/MotB CFI11_14830 PF00691 OmpA family CFI11_14845 PF02563 Polysaccharide biosynthesis/export protein CFI11_14855 PF00475 Imidazoleglycerol-phosphate dehydratase CFI11_14860 PF00117 Glutamine amidotransferase class-I CFI11_14885 PF00977 Histidine biosynthesis protein CFI11_14895 PF03625 Domain of unknown function DUF302 CFI11_14895 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CFI11_14900 PF00977 Histidine biosynthesis protein CFI11_14905 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CFI11_14920 PF13380 CoA binding domain CFI11_14935 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFI11_14935 PF00588 SpoU rRNA Methylase family CFI11_14945 PF00356 Bacterial regulatory proteins, lacI family CFI11_14955 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14960 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_14965 PF00005 ABC transporter CFI11_14965 PF08402 TOBE domain CFI11_14975 PF08125 Mannitol dehydrogenase C-terminal domain CFI11_14975 PF01232 Mannitol dehydrogenase Rossmann domain CFI11_14980 PF00294 pfkB family carbohydrate kinase CFI11_14985 PF00005 ABC transporter CFI11_14985 PF03459 TOBE domain CFI11_14985 PF10649 Protein of unknown function (DUF2478) CFI11_14990 PF03453 MoeA N-terminal region (domain I and II) CFI11_14990 PF00994 Probable molybdopterin binding domain CFI11_14990 PF03454 MoeA C-terminal region (domain IV) CFI11_14995 PF03453 MoeA N-terminal region (domain I and II) CFI11_14995 PF03454 MoeA C-terminal region (domain IV) CFI11_14995 PF00994 Probable molybdopterin binding domain CFI11_15005 PF18465 Rieske 3Fe-4S CFI11_15005 PF00384 Molybdopterin oxidoreductase CFI11_15005 PF01568 Molydopterin dinucleotide binding domain CFI11_15015 PF03150 Di-haem cytochrome c peroxidase CFI11_15020 PF03150 Di-haem cytochrome c peroxidase CFI11_15025 PF03466 LysR substrate binding domain CFI11_15025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_15030 PF00141 Peroxidase CFI11_15055 PF00196 Bacterial regulatory proteins, luxR family CFI11_15055 PF03472 Autoinducer binding domain CFI11_15065 PF01266 FAD dependent oxidoreductase CFI11_15075 PF01979 Amidohydrolase family CFI11_15080 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15085 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15095 PF08402 TOBE domain CFI11_15095 PF00005 ABC transporter CFI11_15100 PF03466 LysR substrate binding domain CFI11_15100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_15105 PF00795 Carbon-nitrogen hydrolase CFI11_15130 PF01032 FecCD transport family CFI11_15135 PF01032 FecCD transport family CFI11_15140 PF00005 ABC transporter CFI11_15145 PF00664 ABC transporter transmembrane region CFI11_15145 PF00005 ABC transporter CFI11_15150 PF00593 TonB dependent receptor CFI11_15150 PF07715 TonB-dependent Receptor Plug Domain CFI11_15165 PF13977 BetI-type transcriptional repressor, C-terminal CFI11_15165 PF00440 Bacterial regulatory proteins, tetR family CFI11_15170 PF00893 Small Multidrug Resistance protein CFI11_15175 PF01047 MarR family CFI11_15185 PF01042 Endoribonuclease L-PSP CFI11_15205 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15210 PF03459 TOBE domain CFI11_15210 PF00005 ABC transporter CFI11_15215 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CFI11_15230 PF00753 Metallo-beta-lactamase superfamily CFI11_15245 PF16736 Single Cache-like CFI11_15245 PF00989 PAS fold CFI11_15245 PF00512 His Kinase A (phospho-acceptor) domain CFI11_15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_15255 PF00072 Response regulator receiver domain CFI11_15255 PF00486 Transcriptional regulatory protein, C terminal CFI11_15260 PF01381 Helix-turn-helix CFI11_15260 PF06114 IrrE N-terminal-like domain CFI11_15260 PF09856 Predicted transcriptional regulator (DUF2083) CFI11_15270 PF02653 Branched-chain amino acid transport system / permease component CFI11_15280 PF00005 ABC transporter CFI11_15280 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_15285 PF00005 ABC transporter CFI11_15295 PF00501 AMP-binding enzyme CFI11_15295 PF13193 AMP-binding enzyme C-terminal domain CFI11_15300 PF00364 Biotin-requiring enzyme CFI11_15305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFI11_15305 PF02785 Biotin carboxylase C-terminal domain CFI11_15305 PF00289 Biotin carboxylase, N-terminal domain CFI11_15310 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CFI11_15335 PF07724 AAA domain (Cdc48 subfamily) CFI11_15335 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_15335 PF06689 ClpX C4-type zinc finger CFI11_15340 PF00574 Clp protease CFI11_15360 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_15375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFI11_15375 PF02817 e3 binding domain CFI11_15375 PF00364 Biotin-requiring enzyme CFI11_15380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFI11_15380 PF00364 Biotin-requiring enzyme CFI11_15380 PF02817 e3 binding domain CFI11_15385 PF00676 Dehydrogenase E1 component CFI11_15390 PF02780 Transketolase, C-terminal domain CFI11_15390 PF02779 Transketolase, pyrimidine binding domain CFI11_15405 PF00034 Cytochrome c CFI11_15410 PF00174 Oxidoreductase molybdopterin binding domain CFI11_15415 PF00149 Calcineurin-like phosphoesterase CFI11_15415 PF02872 5'-nucleotidase, C-terminal domain CFI11_15445 PF02683 Cytochrome C biogenesis protein transmembrane region CFI11_15460 PF01022 Bacterial regulatory protein, arsR family CFI11_15465 PF04143 Sulphur transport CFI11_15475 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus CFI11_15475 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term CFI11_15490 PF05853 beta-keto acid cleavage enzyme CFI11_15515 PF07690 Major Facilitator Superfamily CFI11_15535 PF07943 Penicillin-binding protein 5, C-terminal domain CFI11_15535 PF00768 D-alanyl-D-alanine carboxypeptidase CFI11_15540 PF02223 Thymidylate kinase CFI11_15545 PF09115 DNA polymerase III, delta subunit, C terminal CFI11_15550 PF01026 TatD related DNase CFI11_15555 PF12706 Beta-lactamase superfamily domain CFI11_15570 PF02560 Cyanate lyase C-terminal domain CFI11_15580 PF00005 ABC transporter CFI11_15585 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15595 PF01590 GAF domain CFI11_15595 PF00158 Sigma-54 interaction domain CFI11_15605 PF00005 ABC transporter CFI11_15625 PF04545 Sigma-70, region 4 CFI11_15625 PF04542 Sigma-70 region 2 CFI11_15675 PF00440 Bacterial regulatory proteins, tetR family CFI11_15675 PF13977 BetI-type transcriptional repressor, C-terminal CFI11_15695 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFI11_15695 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFI11_15700 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFI11_15700 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFI11_15715 PF07690 Major Facilitator Superfamily CFI11_15740 PF02028 BCCT, betaine/carnitine/choline family transporter CFI11_15750 PF00582 Universal stress protein family CFI11_15755 PF00873 AcrB/AcrD/AcrF family CFI11_15760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFI11_15770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_15770 PF00005 ABC transporter CFI11_15775 PF00005 ABC transporter CFI11_15775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_15780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_15785 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15805 PF00392 Bacterial regulatory proteins, gntR family CFI11_15805 PF07729 FCD domain CFI11_15815 PF07364 Metallopeptidase family M81 CFI11_15815 PF07171 MlrC C-terminus CFI11_15820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_15825 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15830 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15835 PF00005 ABC transporter CFI11_15835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_15840 PF07687 Peptidase dimerisation domain CFI11_15840 PF01546 Peptidase family M20/M25/M40 CFI11_15845 PF07687 Peptidase dimerisation domain CFI11_15845 PF01546 Peptidase family M20/M25/M40 CFI11_15860 PF12804 MobA-like NTP transferase domain CFI11_15860 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_15865 PF13478 XdhC Rossmann domain CFI11_15865 PF02625 XdhC and CoxI family CFI11_15880 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_15880 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFI11_15885 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_15885 PF01799 [2Fe-2S] binding domain CFI11_15890 PF03450 CO dehydrogenase flavoprotein C-terminal domain CFI11_15890 PF00941 FAD binding domain in molybdopterin dehydrogenase CFI11_15895 PF00563 EAL domain CFI11_15895 PF13188 PAS domain CFI11_15895 PF03707 Bacterial signalling protein N terminal repeat CFI11_15895 PF00990 Diguanylate cyclase, GGDEF domain CFI11_15920 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_15920 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_15945 PF00543 Nitrogen regulatory protein P-II CFI11_15950 PF00120 Glutamine synthetase, catalytic domain CFI11_15950 PF03951 Glutamine synthetase, beta-Grasp domain CFI11_15955 PF13406 Transglycosylase SLT domain CFI11_15965 PF05593 RHS Repeat CFI11_15965 PF03527 RHS protein CFI11_15980 PF04717 Type VI secretion system, phage-baseplate injector CFI11_15985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFI11_15990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFI11_15990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFI11_16010 PF00557 Metallopeptidase family M24 CFI11_16015 PF00905 Penicillin binding protein transpeptidase domain CFI11_16020 PF03466 LysR substrate binding domain CFI11_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_16040 PF10397 Adenylosuccinate lyase C-terminus CFI11_16040 PF00206 Lyase CFI11_16045 PF14842 FliG N-terminal domain CFI11_16045 PF01706 FliG C-terminal domain CFI11_16045 PF14841 FliG middle domain CFI11_16050 PF05746 DALR anticodon binding domain CFI11_16050 PF02092 Glycyl-tRNA synthetase beta subunit CFI11_16060 PF02091 Glycyl-tRNA synthetase alpha subunit CFI11_16070 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_16070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_16070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_16075 PF02386 Cation transport protein CFI11_16095 PF02649 Type I GTP cyclohydrolase folE2 CFI11_16100 PF01053 Cys/Met metabolism PLP-dependent enzyme CFI11_16110 PF00043 Glutathione S-transferase, C-terminal domain CFI11_16110 PF02798 Glutathione S-transferase, N-terminal domain CFI11_16115 PF04279 Intracellular septation protein A CFI11_16125 PF02881 SRP54-type protein, helical bundle domain CFI11_16125 PF00448 SRP54-type protein, GTPase domain CFI11_16130 PF10531 SLBB domain CFI11_16130 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CFI11_16130 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFI11_16135 PF00487 Fatty acid desaturase CFI11_16145 PF02601 Exonuclease VII, large subunit CFI11_16145 PF13742 OB-fold nucleic acid binding domain CFI11_16150 PF02844 Phosphoribosylglycinamide synthetase, N domain CFI11_16150 PF02843 Phosphoribosylglycinamide synthetase, C domain CFI11_16150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFI11_16160 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_16170 PF13180 PDZ domain CFI11_16180 PF01145 SPFH domain / Band 7 family CFI11_16185 PF01145 SPFH domain / Band 7 family CFI11_16190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFI11_16190 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_16195 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CFI11_16205 PF13417 Glutathione S-transferase, N-terminal domain CFI11_16210 PF03315 Serine dehydratase beta chain CFI11_16210 PF03313 Serine dehydratase alpha chain CFI11_16235 PF00376 MerR family regulatory protein CFI11_16235 PF09278 MerR, DNA binding CFI11_16245 PF00709 Adenylosuccinate synthetase CFI11_16250 PF02522 Aminoglycoside 3-N-acetyltransferase CFI11_16260 PF08443 RimK-like ATP-grasp domain CFI11_16260 PF18030 RimK PreATP-grasp domain CFI11_16275 PF02979 Nitrile hydratase, alpha chain CFI11_16285 PF00117 Glutamine amidotransferase class-I CFI11_16285 PF06418 CTP synthase N-terminus CFI11_16290 PF16363 GDP-mannose 4,6 dehydratase CFI11_16295 PF01244 Membrane dipeptidase (Peptidase family M19) CFI11_16320 PF00005 ABC transporter CFI11_16325 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFI11_16330 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_16335 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_16340 PF00120 Glutamine synthetase, catalytic domain CFI11_16345 PF00958 GMP synthase C terminal domain CFI11_16345 PF00117 Glutamine amidotransferase class-I CFI11_16345 PF02540 NAD synthase CFI11_16350 PF00120 Glutamine synthetase, catalytic domain CFI11_16355 PF01266 FAD dependent oxidoreductase CFI11_16360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFI11_16365 PF01063 Amino-transferase class IV CFI11_16380 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CFI11_16380 PF00561 alpha/beta hydrolase fold CFI11_16435 PF03129 Anticodon binding domain CFI11_16435 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFI11_16435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFI11_16435 PF02824 TGS domain CFI11_16445 PF05114 Protein of unknown function (DUF692) CFI11_16465 PF03960 ArsC family CFI11_16470 PF00313 'Cold-shock' DNA-binding domain CFI11_16485 PF00067 Cytochrome P450 CFI11_16490 PF02511 Thymidylate synthase complementing protein CFI11_16505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_16515 PF12802 MarR family CFI11_16525 PF00717 Peptidase S24-like CFI11_16525 PF01381 Helix-turn-helix CFI11_16540 PF01554 MatE CFI11_16545 PF03824 High-affinity nickel-transport protein CFI11_16560 PF03796 DnaB-like helicase C terminal domain CFI11_16565 PF00561 alpha/beta hydrolase fold CFI11_16575 PF01145 SPFH domain / Band 7 family CFI11_16575 PF15975 Flotillin CFI11_16590 PF00204 DNA gyrase B CFI11_16590 PF00986 DNA gyrase B subunit, carboxyl terminus CFI11_16590 PF01751 Toprim domain CFI11_16590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_16620 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CFI11_16620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFI11_16630 PF02615 Malate/L-lactate dehydrogenase CFI11_16635 PF00005 ABC transporter CFI11_16640 PF12704 MacB-like periplasmic core domain CFI11_16640 PF02687 FtsX-like permease family CFI11_16660 PF03129 Anticodon binding domain CFI11_16660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFI11_16665 PF01594 AI-2E family transporter CFI11_16675 PF13089 Polyphosphate kinase N-terminal domain CFI11_16675 PF13090 Polyphosphate kinase C-terminal domain 2 CFI11_16675 PF02503 Polyphosphate kinase middle domain CFI11_16675 PF17941 Polyphosphate kinase C-terminal domain 1 CFI11_16685 PF02541 Ppx/GppA phosphatase family CFI11_16700 PF05099 Tellurite resistance protein TerB CFI11_16700 PF00226 DnaJ domain CFI11_16730 PF00289 Biotin carboxylase, N-terminal domain CFI11_16730 PF02785 Biotin carboxylase C-terminal domain CFI11_16730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFI11_16765 PF01039 Carboxyl transferase domain CFI11_16770 PF07690 Major Facilitator Superfamily CFI11_16775 PF01381 Helix-turn-helix CFI11_16775 PF06114 IrrE N-terminal-like domain CFI11_16775 PF09856 Predicted transcriptional regulator (DUF2083) CFI11_16785 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFI11_16785 PF13378 Enolase C-terminal domain-like CFI11_16790 PF05199 GMC oxidoreductase CFI11_16790 PF00732 GMC oxidoreductase CFI11_16795 PF00171 Aldehyde dehydrogenase family CFI11_16800 PF12411 Choline sulfatase enzyme C terminal CFI11_16800 PF00884 Sulfatase CFI11_16805 PF00440 Bacterial regulatory proteins, tetR family CFI11_16805 PF13977 BetI-type transcriptional repressor, C-terminal CFI11_16810 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CFI11_16820 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_16825 PF00571 CBS domain CFI11_16825 PF00005 ABC transporter CFI11_16830 PF00892 EamA-like transporter family CFI11_16850 PF09285 Elongation factor P, C-terminal CFI11_16850 PF08207 Elongation factor P (EF-P) KOW-like domain CFI11_16850 PF01132 Elongation factor P (EF-P) OB domain CFI11_16865 PF07685 CobB/CobQ-like glutamine amidotransferase domain CFI11_16875 PF02321 Outer membrane efflux protein CFI11_16890 PF00005 ABC transporter CFI11_16895 PF00005 ABC transporter CFI11_16895 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_16905 PF02653 Branched-chain amino acid transport system / permease component CFI11_16920 PF00743 Flavin-binding monooxygenase-like CFI11_16925 PF00144 Beta-lactamase CFI11_16930 PF08543 Phosphomethylpyrimidine kinase CFI11_16935 PF17391 Urocanase N-terminal domain CFI11_16935 PF01175 Urocanase Rossmann-like domain CFI11_16935 PF17392 Urocanase C-terminal domain CFI11_16945 PF00221 Aromatic amino acid lyase CFI11_16950 PF01979 Amidohydrolase family CFI11_16955 PF03600 Citrate transporter CFI11_16955 PF02080 TrkA-C domain CFI11_16965 PF13277 YmdB-like protein CFI11_16970 PF01812 5-formyltetrahydrofolate cyclo-ligase family CFI11_16975 PF00571 CBS domain CFI11_16975 PF03448 MgtE intracellular N domain CFI11_16975 PF01769 Divalent cation transporter CFI11_16980 PF01979 Amidohydrolase family CFI11_16985 PF01979 Amidohydrolase family CFI11_16990 PF00459 Inositol monophosphatase family CFI11_16995 PF01381 Helix-turn-helix CFI11_17000 PF08990 Erythronolide synthase docking CFI11_17000 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_17000 PF00698 Acyl transferase domain CFI11_17000 PF00109 Beta-ketoacyl synthase, N-terminal domain CFI11_17000 PF14765 Polyketide synthase dehydratase CFI11_17000 PF00550 Phosphopantetheine attachment site CFI11_17000 PF16197 Ketoacyl-synthetase C-terminal extension CFI11_17000 PF08659 KR domain CFI11_17000 PF02801 Beta-ketoacyl synthase, C-terminal domain CFI11_17005 PF03466 LysR substrate binding domain CFI11_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_17015 PF01027 Inhibitor of apoptosis-promoting Bax1 CFI11_17025 PF00471 Ribosomal protein L33 CFI11_17045 PF01510 N-acetylmuramoyl-L-alanine amidase CFI11_17055 PF01425 Amidase CFI11_17060 PF02686 Glu-tRNAGln amidotransferase C subunit CFI11_17065 PF02627 Carboxymuconolactone decarboxylase family CFI11_17075 PF12706 Beta-lactamase superfamily domain CFI11_17080 PF05524 PEP-utilising enzyme, N-terminal CFI11_17080 PF00391 PEP-utilising enzyme, mobile domain CFI11_17080 PF02896 PEP-utilising enzyme, TIM barrel domain CFI11_17085 PF01842 ACT domain CFI11_17085 PF00696 Amino acid kinase family CFI11_17085 PF13840 ACT domain CFI11_17120 PF01740 STAS domain CFI11_17120 PF00916 Sulfate permease family CFI11_17125 PF01048 Phosphorylase superfamily CFI11_17130 PF01810 LysE type translocator CFI11_17135 PF00156 Phosphoribosyl transferase domain CFI11_17140 PF01565 FAD binding domain CFI11_17140 PF02913 FAD linked oxidases, C-terminal domain CFI11_17155 PF05193 Peptidase M16 inactive domain CFI11_17155 PF00675 Insulinase (Peptidase family M16) CFI11_17160 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_17160 PF14821 Threonine synthase N terminus CFI11_17165 PF02104 SURF1 family CFI11_17170 PF00510 Cytochrome c oxidase subunit III CFI11_17175 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CFI11_17180 PF01040 UbiA prenyltransferase family CFI11_17185 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFI11_17185 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CFI11_17190 PF01523 Putative modulator of DNA gyrase CFI11_17200 PF02481 DNA recombination-mediator protein A CFI11_17205 PF13368 Topoisomerase C-terminal repeat CFI11_17205 PF01131 DNA topoisomerase CFI11_17205 PF01396 Topoisomerase DNA binding C4 zinc finger CFI11_17205 PF01751 Toprim domain CFI11_17210 PF01144 Coenzyme A transferase CFI11_17215 PF13426 PAS domain CFI11_17215 PF07568 Histidine kinase CFI11_17215 PF13581 Histidine kinase-like ATPase domain CFI11_17220 PF01144 Coenzyme A transferase CFI11_17245 PF13629 Pilus formation protein N terminal region CFI11_17245 PF04972 BON domain CFI11_17245 PF00263 Bacterial type II and III secretion system protein CFI11_17250 PF00691 OmpA family CFI11_17250 PF05736 OprF membrane domain CFI11_17260 PF00437 Type II/IV secretion system protein CFI11_17300 PF00271 Helicase conserved C-terminal domain CFI11_17300 PF08494 DEAD/H associated CFI11_17300 PF00270 DEAD/DEAH box helicase CFI11_17315 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFI11_17315 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFI11_17325 PF01268 Formate--tetrahydrofolate ligase CFI11_17335 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_17335 PF01434 Peptidase family M41 CFI11_17335 PF17862 AAA+ lid domain CFI11_17335 PF06480 FtsH Extracellular CFI11_17340 PF01171 PP-loop family CFI11_17350 PF00691 OmpA family CFI11_17355 PF04052 TolB amino-terminal domain CFI11_17355 PF07676 WD40-like Beta Propeller Repeat CFI11_17365 PF02472 Biopolymer transport protein ExbD/TolR CFI11_17370 PF01618 MotA/TolQ/ExbB proton channel family CFI11_17375 PF03061 Thioesterase superfamily CFI11_17385 PF17864 RuvB AAA lid domain CFI11_17385 PF05496 Holliday junction DNA helicase RuvB P-loop domain CFI11_17385 PF05491 RuvB C-terminal winged helix domain CFI11_17390 PF01330 RuvA N terminal domain CFI11_17390 PF07499 RuvA, C-terminal domain CFI11_17395 PF02075 Crossover junction endodeoxyribonuclease RuvC CFI11_17420 PF18074 Primosomal protein N C-terminal domain CFI11_17420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CFI11_17420 PF17764 3′ DNA-binding domain (3′BD) CFI11_17420 PF00270 DEAD/DEAH box helicase CFI11_17425 PF00923 Transaldolase/Fructose-6-phosphate aldolase CFI11_17435 PF00589 Phage integrase family CFI11_17435 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_17440 PF01066 CDP-alcohol phosphatidyltransferase CFI11_17450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFI11_17450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFI11_17460 PF08264 Anticodon-binding domain of tRNA CFI11_17460 PF00133 tRNA synthetases class I (I, L, M and V) CFI11_17470 PF00085 Thioredoxin CFI11_17470 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_17475 PF05128 Domain of unknown function (DUF697) CFI11_17485 PF04317 YcjX-like family, DUF463 CFI11_17490 PF01416 tRNA pseudouridine synthase CFI11_17510 PF00582 Universal stress protein family CFI11_17515 PF02347 Glycine cleavage system P-protein CFI11_17520 PF01597 Glycine cleavage H-protein CFI11_17525 PF01571 Aminomethyltransferase folate-binding domain CFI11_17525 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_17530 PF00120 Glutamine synthetase, catalytic domain CFI11_17535 PF00355 Rieske [2Fe-2S] domain CFI11_17545 PF01042 Endoribonuclease L-PSP CFI11_17550 PF00005 ABC transporter CFI11_17555 PF00005 ABC transporter CFI11_17560 PF11862 Domain of unknown function (DUF3382) CFI11_17560 PF02653 Branched-chain amino acid transport system / permease component CFI11_17565 PF02653 Branched-chain amino acid transport system / permease component CFI11_17575 PF00501 AMP-binding enzyme CFI11_17575 PF13193 AMP-binding enzyme C-terminal domain CFI11_17580 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_17580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_17580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_17585 PF00378 Enoyl-CoA hydratase/isomerase CFI11_17595 PF00106 short chain dehydrogenase CFI11_17600 PF01494 FAD binding domain CFI11_17605 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_17605 PF01266 FAD dependent oxidoreductase CFI11_17605 PF16350 FAD dependent oxidoreductase central domain CFI11_17605 PF01571 Aminomethyltransferase folate-binding domain CFI11_17620 PF14791 DNA polymerase beta thumb CFI11_17620 PF14716 Helix-hairpin-helix domain CFI11_17620 PF02811 PHP domain CFI11_17625 PF03109 ABC1 family CFI11_17630 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_17655 PF03060 Nitronate monooxygenase CFI11_17660 PF01425 Amidase CFI11_17670 PF01739 CheR methyltransferase, SAM binding domain CFI11_17670 PF03705 CheR methyltransferase, all-alpha domain CFI11_17670 PF01339 CheB methylesterase CFI11_17670 PF08448 PAS fold CFI11_17685 PF03707 Bacterial signalling protein N terminal repeat CFI11_17685 PF00990 Diguanylate cyclase, GGDEF domain CFI11_17685 PF00563 EAL domain CFI11_17695 PF00072 Response regulator receiver domain CFI11_17695 PF13426 PAS domain CFI11_17695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_17705 PF13667 ThiC-associated domain CFI11_17705 PF01964 Radical SAM ThiC family CFI11_17710 PF01266 FAD dependent oxidoreductase CFI11_17720 PF05690 Thiazole biosynthesis protein ThiG CFI11_17725 PF02581 Thiamine monophosphate synthase CFI11_17730 PF00899 ThiF family CFI11_17735 PF00317 Ribonucleotide reductase, all-alpha domain CFI11_17735 PF02867 Ribonucleotide reductase, barrel domain CFI11_17735 PF03477 ATP cone domain CFI11_17745 PF13360 PQQ-like domain CFI11_17745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFI11_17755 PF00501 AMP-binding enzyme CFI11_17760 PF00005 ABC transporter CFI11_17775 PF02653 Branched-chain amino acid transport system / permease component CFI11_17775 PF11862 Domain of unknown function (DUF3382) CFI11_17780 PF00005 ABC transporter CFI11_17780 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFI11_17785 PF01634 ATP phosphoribosyltransferase CFI11_17790 PF13393 Histidyl-tRNA synthetase CFI11_17795 PF13393 Histidyl-tRNA synthetase CFI11_17795 PF03129 Anticodon binding domain CFI11_17800 PF00378 Enoyl-CoA hydratase/isomerase CFI11_17815 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFI11_17815 PF14579 Helix-hairpin-helix motif CFI11_17815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFI11_17815 PF02811 PHP domain CFI11_17820 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_17820 PF01799 [2Fe-2S] binding domain CFI11_17825 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFI11_17825 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_17850 PF02608 ABC transporter substrate-binding protein PnrA-like CFI11_17855 PF00571 CBS domain CFI11_17860 PF00248 Aldo/keto reductase family CFI11_17865 PF01266 FAD dependent oxidoreductase CFI11_17875 PF16350 FAD dependent oxidoreductase central domain CFI11_17875 PF01571 Aminomethyltransferase folate-binding domain CFI11_17875 PF01266 FAD dependent oxidoreductase CFI11_17875 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_17880 PF01565 FAD binding domain CFI11_17880 PF02913 FAD linked oxidases, C-terminal domain CFI11_17890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFI11_17890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFI11_17900 PF00561 alpha/beta hydrolase fold CFI11_17905 PF00107 Zinc-binding dehydrogenase CFI11_17905 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_17920 PF13411 MerR HTH family regulatory protein CFI11_17935 PF00082 Subtilase family CFI11_17935 PF01483 Proprotein convertase P-domain CFI11_17940 PF01223 DNA/RNA non-specific endonuclease CFI11_17945 PF12833 Helix-turn-helix domain CFI11_17945 PF02311 AraC-like ligand binding domain CFI11_17950 PF00144 Beta-lactamase CFI11_17955 PF17912 MalK OB fold domain CFI11_17955 PF00005 ABC transporter CFI11_17960 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_17965 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_17970 PF13416 Bacterial extracellular solute-binding protein CFI11_17975 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_17980 PF00005 ABC transporter CFI11_17990 PF01266 FAD dependent oxidoreductase CFI11_17995 PF00202 Aminotransferase class-III CFI11_18000 PF00392 Bacterial regulatory proteins, gntR family CFI11_18000 PF00155 Aminotransferase class I and II CFI11_18005 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_18005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_18005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_18010 PF00871 Acetokinase family CFI11_18015 PF03601 Conserved hypothetical protein 698 CFI11_18020 PF00384 Molybdopterin oxidoreductase CFI11_18020 PF01568 Molydopterin dinucleotide binding domain CFI11_18020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFI11_18030 PF13247 4Fe-4S dicluster domain CFI11_18030 PF12800 4Fe-4S binding domain CFI11_18040 PF00701 Dihydrodipicolinate synthetase family CFI11_18045 PF01464 Transglycosylase SLT domain CFI11_18045 PF14718 Soluble lytic murein transglycosylase L domain CFI11_18055 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CFI11_18055 PF01266 FAD dependent oxidoreductase CFI11_18070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_18080 PF00691 OmpA family CFI11_18080 PF13488 Glycine zipper CFI11_18090 PF12833 Helix-turn-helix domain CFI11_18090 PF02805 Metal binding domain of Ada CFI11_18090 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFI11_18090 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFI11_18095 PF00633 Helix-hairpin-helix motif CFI11_18095 PF10576 Iron-sulfur binding domain of endonuclease III CFI11_18095 PF00730 HhH-GPD superfamily base excision DNA repair protein CFI11_18100 PF00294 pfkB family carbohydrate kinase CFI11_18110 PF00293 NUDIX domain CFI11_18115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFI11_18115 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_18140 PF01544 CorA-like Mg2+ transporter protein CFI11_18150 PF03466 LysR substrate binding domain CFI11_18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_18155 PF00691 OmpA family CFI11_18155 PF05736 OprF membrane domain CFI11_18170 PF02464 Competence-damaged protein CFI11_18170 PF00994 Probable molybdopterin binding domain CFI11_18170 PF18146 Damage-inducible protein CinA KH domain CFI11_18175 PF17746 SfsA N-terminal OB domain CFI11_18175 PF03749 Sugar fermentation stimulation protein RE domain CFI11_18180 PF00557 Metallopeptidase family M24 CFI11_18195 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_18195 PF14759 Reductase C-terminal CFI11_18200 PF08534 Redoxin CFI11_18205 PF13581 Histidine kinase-like ATPase domain CFI11_18205 PF07568 Histidine kinase CFI11_18205 PF13426 PAS domain CFI11_18210 PF01329 Pterin 4 alpha carbinolamine dehydratase CFI11_18230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFI11_18230 PF00529 HlyD membrane-fusion protein of T1SS CFI11_18235 PF00005 ABC transporter CFI11_18235 PF00664 ABC transporter transmembrane region CFI11_18240 PF04333 MlaA lipoprotein CFI11_18250 PF00912 Transglycosylase CFI11_18250 PF17092 Penicillin-binding protein OB-like domain CFI11_18250 PF00905 Penicillin binding protein transpeptidase domain CFI11_18255 PF00543 Nitrogen regulatory protein P-II CFI11_18260 PF00909 Ammonium Transporter Family CFI11_18265 PF00155 Aminotransferase class I and II CFI11_18270 PF00581 Rhodanese-like domain CFI11_18280 PF01668 SmpB protein CFI11_18305 PF07509 Protein of unknown function (DUF1523) CFI11_18345 PF01321 Creatinase/Prolidase N-terminal domain CFI11_18345 PF00557 Metallopeptidase family M24 CFI11_18355 PF00171 Aldehyde dehydrogenase family CFI11_18365 PF00011 Hsp20/alpha crystallin family CFI11_18370 PF00089 Trypsin CFI11_18375 PF02754 Cysteine-rich domain CFI11_18375 PF13183 4Fe-4S dicluster domain CFI11_18385 PF01565 FAD binding domain CFI11_18390 PF01565 FAD binding domain CFI11_18390 PF02913 FAD linked oxidases, C-terminal domain CFI11_18400 PF02590 Predicted SPOUT methyltransferase CFI11_18415 PF00924 Mechanosensitive ion channel CFI11_18415 PF12795 Mechanosensitive ion channel porin domain CFI11_18415 PF12794 Mechanosensitive ion channel inner membrane domain 1 CFI11_18440 PF00330 Aconitase family (aconitate hydratase) CFI11_18445 PF00694 Aconitase C-terminal domain CFI11_18470 PF00180 Isocitrate/isopropylmalate dehydrogenase CFI11_18490 PF02470 MlaD protein CFI11_18495 PF04403 Paraquat-inducible protein A CFI11_18510 PF00392 Bacterial regulatory proteins, gntR family CFI11_18510 PF07702 UTRA domain CFI11_18515 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_18525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_18530 PF03884 DNA gyrase inhibitor YacG CFI11_18540 PF02545 Maf-like protein CFI11_18545 PF01176 Translation initiation factor 1A / IF-1 CFI11_18550 PF00795 Carbon-nitrogen hydrolase CFI11_18575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFI11_18585 PF00583 Acetyltransferase (GNAT) family CFI11_18595 PF06793 Uncharacterised protein family (UPF0262) CFI11_18615 PF02082 Transcriptional regulator CFI11_18620 PF02627 Carboxymuconolactone decarboxylase family CFI11_18645 PF04542 Sigma-70 region 2 CFI11_18645 PF08281 Sigma-70, region 4 CFI11_18650 PF05922 Peptidase inhibitor I9 CFI11_18650 PF00082 Subtilase family CFI11_18655 PF11339 Protein of unknown function (DUF3141) CFI11_18670 PF00072 Response regulator receiver domain CFI11_18670 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_18675 PF09339 IclR helix-turn-helix domain CFI11_18675 PF01614 Bacterial transcriptional regulator CFI11_18680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_18695 PF05199 GMC oxidoreductase CFI11_18695 PF00732 GMC oxidoreductase CFI11_18700 PF00892 EamA-like transporter family CFI11_18720 PF00694 Aconitase C-terminal domain CFI11_18720 PF00330 Aconitase family (aconitate hydratase) CFI11_18730 PF08534 Redoxin CFI11_18740 PF01578 Cytochrome C assembly protein CFI11_18745 PF03379 CcmB protein CFI11_18750 PF00005 ABC transporter CFI11_18755 PF04430 Protein of unknown function (DUF498/DUF598) CFI11_18760 PF02355 Protein export membrane protein CFI11_18760 PF07549 SecD/SecF GG Motif CFI11_18765 PF02355 Protein export membrane protein CFI11_18770 PF02699 Preprotein translocase subunit CFI11_18780 PF02403 Seryl-tRNA synthetase N-terminal domain CFI11_18780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFI11_18795 PF00487 Fatty acid desaturase CFI11_18800 PF01926 50S ribosome-binding GTPase CFI11_18800 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CFI11_18805 PF13360 PQQ-like domain CFI11_18820 PF00873 AcrB/AcrD/AcrF family CFI11_18825 PF00005 ABC transporter CFI11_18825 PF00664 ABC transporter transmembrane region CFI11_18835 PF03641 Possible lysine decarboxylase CFI11_18845 PF01965 DJ-1/PfpI family CFI11_18850 PF00149 Calcineurin-like phosphoesterase CFI11_18855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CFI11_18855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CFI11_18870 PF17806 Sarcosine oxidase A3 domain CFI11_18870 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_18870 PF01571 Aminomethyltransferase folate-binding domain CFI11_18870 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_18895 PF01266 FAD dependent oxidoreductase CFI11_18905 PF03652 Holliday junction resolvase CFI11_18920 PF01925 Sulfite exporter TauE/SafE CFI11_18925 PF01207 Dihydrouridine synthase (Dus) CFI11_18955 PF00486 Transcriptional regulatory protein, C terminal CFI11_18955 PF00072 Response regulator receiver domain CFI11_18960 PF01738 Dienelactone hydrolase family CFI11_18965 PF01292 Prokaryotic cytochrome b561 CFI11_19025 PF01435 Peptidase family M48 CFI11_19040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_19040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFI11_19055 PF00512 His Kinase A (phospho-acceptor) domain CFI11_19055 PF02743 Cache domain CFI11_19055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_19060 PF00158 Sigma-54 interaction domain CFI11_19060 PF00072 Response regulator receiver domain CFI11_19060 PF02954 Bacterial regulatory protein, Fis family CFI11_19100 PF03631 Virulence factor BrkB CFI11_19145 PF03466 LysR substrate binding domain CFI11_19145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_19155 PF12833 Helix-turn-helix domain CFI11_19155 PF01965 DJ-1/PfpI family CFI11_19165 PF03466 LysR substrate binding domain CFI11_19165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_19175 PF00171 Aldehyde dehydrogenase family CFI11_19180 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CFI11_19180 PF00355 Rieske [2Fe-2S] domain CFI11_19185 PF07859 alpha/beta hydrolase fold CFI11_19190 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_19195 PF00571 CBS domain CFI11_19195 PF00005 ABC transporter CFI11_19205 PF13977 BetI-type transcriptional repressor, C-terminal CFI11_19205 PF00440 Bacterial regulatory proteins, tetR family CFI11_19215 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_19215 PF00589 Phage integrase family CFI11_19225 PF00692 dUTPase CFI11_19290 PF04079 Segregation and condensation complex subunit ScpB CFI11_19320 PF01810 LysE type translocator CFI11_19330 PF03466 LysR substrate binding domain CFI11_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_19350 PF12823 Domain of unknown function (DUF3817) CFI11_19365 PF13847 Methyltransferase domain CFI11_19370 PF07690 Major Facilitator Superfamily CFI11_19375 PF02082 Transcriptional regulator CFI11_19390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFI11_19395 PF00682 HMGL-like CFI11_19395 PF07836 DmpG-like communication domain CFI11_19400 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CFI11_19400 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFI11_19405 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_19410 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_19415 PF12697 Alpha/beta hydrolase family CFI11_19420 PF00355 Rieske [2Fe-2S] domain CFI11_19420 PF11723 Homotrimeric ring hydroxylase CFI11_19430 PF00440 Bacterial regulatory proteins, tetR family CFI11_19430 PF08361 MAATS-type transcriptional repressor, C-terminal region CFI11_19435 PF00175 Oxidoreductase NAD-binding domain CFI11_19435 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_19445 PF00149 Calcineurin-like phosphoesterase CFI11_19445 PF02872 5'-nucleotidase, C-terminal domain CFI11_19460 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFI11_19460 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFI11_19465 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_19465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_19495 PF02254 TrkA-N domain CFI11_19495 PF02080 TrkA-C domain CFI11_19500 PF02386 Cation transport protein CFI11_19505 PF00924 Mechanosensitive ion channel CFI11_19540 PF00893 Small Multidrug Resistance protein CFI11_19545 PF06689 ClpX C4-type zinc finger CFI11_19545 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_19545 PF07724 AAA domain (Cdc48 subfamily) CFI11_19570 PF00771 FHIPEP family CFI11_19615 PF00263 Bacterial type II and III secretion system protein CFI11_19615 PF03958 Bacterial type II/III secretion system short domain CFI11_19620 PF01312 FlhB HrpN YscU SpaS Family CFI11_19630 PF01313 Bacterial export proteins, family 3 CFI11_19635 PF00813 FliP family CFI11_19640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFI11_19650 PF18269 T3SS EscN ATPase C-terminal domain CFI11_19650 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFI11_19650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFI11_19665 PF01514 Secretory protein of YscJ/FliF family CFI11_19685 PF00072 Response regulator receiver domain CFI11_19685 PF00486 Transcriptional regulatory protein, C terminal CFI11_19695 PF02311 AraC-like ligand binding domain CFI11_19695 PF12833 Helix-turn-helix domain CFI11_19705 PF07690 Major Facilitator Superfamily CFI11_19710 PF07690 Major Facilitator Superfamily CFI11_19715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_19715 PF03466 LysR substrate binding domain CFI11_19755 PF05762 VWA domain containing CoxE-like protein CFI11_19765 PF07728 AAA domain (dynein-related subfamily) CFI11_19770 PF13569 Domain of unknown function (DUF4132) CFI11_19780 PF00258 Flavodoxin CFI11_19785 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_19790 PF00171 Aldehyde dehydrogenase family CFI11_19795 PF01958 Domain of unknown function DUF108 CFI11_19795 PF03447 Homoserine dehydrogenase, NAD binding domain CFI11_19800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_19800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_19800 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_19815 PF00561 alpha/beta hydrolase fold CFI11_19825 PF00355 Rieske [2Fe-2S] domain CFI11_19830 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_19840 PF00005 ABC transporter CFI11_19855 PF01614 Bacterial transcriptional regulator CFI11_19855 PF09339 IclR helix-turn-helix domain CFI11_19860 PF01970 Tripartite tricarboxylate transporter TctA family CFI11_19880 PF02558 Ketopantoate reductase PanE/ApbA CFI11_19880 PF08546 Ketopantoate reductase PanE/ApbA C terminal CFI11_19885 PF00501 AMP-binding enzyme CFI11_19885 PF13193 AMP-binding enzyme C-terminal domain CFI11_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_19905 PF07730 Histidine kinase CFI11_19905 PF05384 Sensor protein DegS CFI11_19910 PF00072 Response regulator receiver domain CFI11_19910 PF00196 Bacterial regulatory proteins, luxR family CFI11_19925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_19925 PF00512 His Kinase A (phospho-acceptor) domain CFI11_19925 PF08521 Two-component sensor kinase N-terminal CFI11_19930 PF00072 Response regulator receiver domain CFI11_19930 PF00486 Transcriptional regulatory protein, C terminal CFI11_19945 PF07715 TonB-dependent Receptor Plug Domain CFI11_19945 PF00593 TonB dependent receptor CFI11_19950 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CFI11_19960 PF04183 IucA / IucC family CFI11_19960 PF06276 Ferric iron reductase FhuF-like transporter CFI11_19970 PF06276 Ferric iron reductase FhuF-like transporter CFI11_19970 PF04183 IucA / IucC family CFI11_19980 PF01042 Endoribonuclease L-PSP CFI11_19990 PF00171 Aldehyde dehydrogenase family CFI11_19995 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CFI11_20000 PF00392 Bacterial regulatory proteins, gntR family CFI11_20000 PF07729 FCD domain CFI11_20005 PF00701 Dihydrodipicolinate synthetase family CFI11_20010 PF13378 Enolase C-terminal domain-like CFI11_20010 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFI11_20015 PF01970 Tripartite tricarboxylate transporter TctA family CFI11_20030 PF07995 Glucose / Sorbosone dehydrogenase CFI11_20035 PF13545 Crp-like helix-turn-helix domain CFI11_20035 PF00027 Cyclic nucleotide-binding domain CFI11_20040 PF04055 Radical SAM superfamily CFI11_20045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_20045 PF00005 ABC transporter CFI11_20050 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_20050 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_20055 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_20060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_20065 PF00034 Cytochrome c CFI11_20070 PF01842 ACT domain CFI11_20070 PF01817 Chorismate mutase type II CFI11_20070 PF00800 Prephenate dehydratase CFI11_20080 PF09297 NADH pyrophosphatase zinc ribbon domain CFI11_20080 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CFI11_20080 PF00293 NUDIX domain CFI11_20085 PF00149 Calcineurin-like phosphoesterase CFI11_20085 PF02872 5'-nucleotidase, C-terminal domain CFI11_20095 PF00561 alpha/beta hydrolase fold CFI11_20105 PF00440 Bacterial regulatory proteins, tetR family CFI11_20115 PF12170 DNA polymerase III tau subunit V interacting with alpha CFI11_20115 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CFI11_20115 PF12169 DNA polymerase III subunits gamma and tau domain III CFI11_20125 PF02575 YbaB/EbfC DNA-binding family CFI11_20135 PF13662 Toprim domain CFI11_20135 PF02132 RecR protein CFI11_20145 PF00857 Isochorismatase family CFI11_20150 PF03466 LysR substrate binding domain CFI11_20150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_20160 PF00445 Ribonuclease T2 family CFI11_20165 PF04116 Fatty acid hydroxylase superfamily CFI11_20175 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_20175 PF00107 Zinc-binding dehydrogenase CFI11_20185 PF00107 Zinc-binding dehydrogenase CFI11_20185 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_20200 PF01165 Ribosomal protein S21 CFI11_20205 PF01425 Amidase CFI11_20210 PF12833 Helix-turn-helix domain CFI11_20210 PF02311 AraC-like ligand binding domain CFI11_20220 PF01037 Lrp/AsnC ligand binding domain CFI11_20225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CFI11_20225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CFI11_20230 PF01741 Large-conductance mechanosensitive channel, MscL CFI11_20235 PF00043 Glutathione S-transferase, C-terminal domain CFI11_20235 PF02798 Glutathione S-transferase, N-terminal domain CFI11_20240 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ CFI11_20245 PF03484 tRNA synthetase B5 domain CFI11_20245 PF03147 Ferredoxin-fold anticodon binding domain CFI11_20245 PF01588 Putative tRNA binding domain CFI11_20245 PF03483 B3/4 domain CFI11_20245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CFI11_20265 PF01409 tRNA synthetases class II core domain (F) CFI11_20265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CFI11_20275 PF00144 Beta-lactamase CFI11_20285 PF00994 Probable molybdopterin binding domain CFI11_20285 PF03453 MoeA N-terminal region (domain I and II) CFI11_20285 PF03454 MoeA C-terminal region (domain IV) CFI11_20295 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CFI11_20300 PF12804 MobA-like NTP transferase domain CFI11_20305 PF02634 FdhD/NarQ family CFI11_20340 PF02770 Acyl-CoA dehydrogenase, middle domain CFI11_20340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFI11_20340 PF12806 Acetyl-CoA dehydrogenase C-terminal like CFI11_20340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFI11_20345 PF01300 Telomere recombination CFI11_20345 PF03481 Putative GTP-binding controlling metal-binding CFI11_20350 PF02622 Uncharacterized ACR, COG1678 CFI11_20365 PF00873 AcrB/AcrD/AcrF family CFI11_20375 PF00994 Probable molybdopterin binding domain CFI11_20380 PF01810 LysE type translocator CFI11_20385 PF03167 Uracil DNA glycosylase superfamily CFI11_20390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFI11_20390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFI11_20405 PF01979 Amidohydrolase family CFI11_20410 PF02660 Glycerol-3-phosphate acyltransferase CFI11_20415 PF00326 Prolyl oligopeptidase family CFI11_20415 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CFI11_20450 PF04452 RNA methyltransferase CFI11_20455 PF01040 UbiA prenyltransferase family CFI11_20470 PF02391 MoaE protein CFI11_20480 PF01066 CDP-alcohol phosphatidyltransferase CFI11_20485 PF02151 UvrB/uvrC motif CFI11_20485 PF08459 UvrC Helix-hairpin-helix N-terminal CFI11_20485 PF12826 Helix-hairpin-helix motif CFI11_20485 PF01541 GIY-YIG catalytic domain CFI11_20495 PF01699 Sodium/calcium exchanger protein CFI11_20500 PF06965 Na+/H+ antiporter 1 CFI11_20500 PF01343 Peptidase family S49 CFI11_20505 PF01061 ABC-2 type transporter CFI11_20510 PF00005 ABC transporter CFI11_20515 PF00892 EamA-like transporter family CFI11_20520 PF00378 Enoyl-CoA hydratase/isomerase CFI11_20535 PF12833 Helix-turn-helix domain CFI11_20535 PF02311 AraC-like ligand binding domain CFI11_20540 PF00144 Beta-lactamase CFI11_20550 PF01432 Peptidase family M3 CFI11_20555 PF00899 ThiF family CFI11_20560 PF00692 dUTPase CFI11_20565 PF02441 Flavoprotein CFI11_20565 PF04127 DNA / pantothenate metabolism flavoprotein CFI11_20575 PF00140 Sigma-70 factor, region 1.2 CFI11_20575 PF04542 Sigma-70 region 2 CFI11_20575 PF04545 Sigma-70, region 4 CFI11_20580 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CFI11_20595 PF01078 Magnesium chelatase, subunit ChlI CFI11_20595 PF13335 Magnesium chelatase, subunit ChlI C-terminal CFI11_20600 PF07859 alpha/beta hydrolase fold CFI11_20605 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CFI11_20605 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CFI11_20610 PF02021 Uncharacterised protein family UPF0102 CFI11_20615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFI11_20625 PF01966 HD domain CFI11_20625 PF08335 GlnD PII-uridylyltransferase CFI11_20630 PF03023 Lipid II flippase MurJ CFI11_20640 PF00579 tRNA synthetases class I (W and Y) CFI11_20645 PF01063 Amino-transferase class IV CFI11_20665 PF03485 Arginyl tRNA synthetase N terminal domain CFI11_20665 PF00750 tRNA synthetases class I (R) CFI11_20665 PF05746 DALR anticodon binding domain CFI11_20670 PF01106 NifU-like domain CFI11_20705 PF01925 Sulfite exporter TauE/SafE CFI11_20715 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CFI11_20715 PF14490 Helix-hairpin-helix containing domain CFI11_20715 PF13538 UvrD-like helicase C-terminal domain CFI11_20720 PF00765 Autoinducer synthase CFI11_20725 PF03472 Autoinducer binding domain CFI11_20725 PF00196 Bacterial regulatory proteins, luxR family CFI11_20740 PF01553 Acyltransferase CFI11_20750 PF00816 H-NS histone family CFI11_20755 PF01048 Phosphorylase superfamily CFI11_20775 PF13085 2Fe-2S iron-sulfur cluster binding domain CFI11_20775 PF13237 4Fe-4S dicluster domain CFI11_20795 PF00890 FAD binding domain CFI11_20795 PF02910 Fumarate reductase flavoprotein C-term CFI11_20805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CFI11_20810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_20820 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_20825 PF00266 Aminotransferase class-V CFI11_20830 PF02913 FAD linked oxidases, C-terminal domain CFI11_20830 PF01565 FAD binding domain CFI11_20830 PF13183 4Fe-4S dicluster domain CFI11_20835 PF07729 FCD domain CFI11_20835 PF00392 Bacterial regulatory proteins, gntR family CFI11_20870 PF04717 Type VI secretion system, phage-baseplate injector CFI11_20890 PF01032 FecCD transport family CFI11_20895 PF00005 ABC transporter CFI11_20900 PF00440 Bacterial regulatory proteins, tetR family CFI11_20905 PF13533 Biotin-lipoyl like CFI11_20915 PF02798 Glutathione S-transferase, N-terminal domain CFI11_20915 PF14497 Glutathione S-transferase, C-terminal domain CFI11_20925 PF01494 FAD binding domain CFI11_20935 PF00753 Metallo-beta-lactamase superfamily CFI11_20945 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_20950 PF04209 homogentisate 1,2-dioxygenase CFI11_20965 PF00282 Pyridoxal-dependent decarboxylase conserved domain CFI11_20975 PF03328 HpcH/HpaI aldolase/citrate lyase family CFI11_20980 PF00378 Enoyl-CoA hydratase/isomerase CFI11_20990 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_20990 PF01799 [2Fe-2S] binding domain CFI11_20995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFI11_21015 PF00958 GMP synthase C terminal domain CFI11_21015 PF00117 Glutamine amidotransferase class-I CFI11_21015 PF02540 NAD synthase CFI11_21025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_21040 PF01047 MarR family CFI11_21045 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_21055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_21070 PF00034 Cytochrome c CFI11_21075 PF04542 Sigma-70 region 2 CFI11_21075 PF08281 Sigma-70, region 4 CFI11_21120 PF01794 Ferric reductase like transmembrane component CFI11_21125 PF00174 Oxidoreductase molybdopterin binding domain CFI11_21130 PF01645 Conserved region in glutamate synthase CFI11_21140 PF02469 Fasciclin domain CFI11_21145 PF02469 Fasciclin domain CFI11_21155 PF02861 Clp amino terminal domain, pathogenicity island component CFI11_21155 PF17871 AAA lid domain CFI11_21155 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_21155 PF07724 AAA domain (Cdc48 subfamily) CFI11_21155 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_21165 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CFI11_21190 PF00512 His Kinase A (phospho-acceptor) domain CFI11_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_21195 PF00486 Transcriptional regulatory protein, C terminal CFI11_21195 PF00072 Response regulator receiver domain CFI11_21205 PF07687 Peptidase dimerisation domain CFI11_21205 PF01546 Peptidase family M20/M25/M40 CFI11_21210 PF01568 Molydopterin dinucleotide binding domain CFI11_21210 PF00384 Molybdopterin oxidoreductase CFI11_21210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFI11_21210 PF12838 4Fe-4S dicluster domain CFI11_21210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFI11_21220 PF14497 Glutathione S-transferase, C-terminal domain CFI11_21220 PF02798 Glutathione S-transferase, N-terminal domain CFI11_21255 PF01593 Flavin containing amine oxidoreductase CFI11_21260 PF04545 Sigma-70, region 4 CFI11_21260 PF04542 Sigma-70 region 2 CFI11_21265 PF12973 ChrR Cupin-like domain CFI11_21270 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_21280 PF02646 RmuC family CFI11_21285 PF01119 DNA mismatch repair protein, C-terminal domain CFI11_21285 PF08676 MutL C terminal dimerisation domain CFI11_21295 PF02322 Cytochrome bd terminal oxidase subunit II CFI11_21300 PF01654 Cytochrome bd terminal oxidase subunit I CFI11_21310 PF00202 Aminotransferase class-III CFI11_21315 PF00860 Permease family CFI11_21320 PF04115 Ureidoglycolate lyase CFI11_21325 PF07883 Cupin domain CFI11_21325 PF05899 Protein of unknown function (DUF861) CFI11_21335 PF00576 HIUase/Transthyretin family CFI11_21340 PF00950 ABC 3 transport family CFI11_21345 PF00950 ABC 3 transport family CFI11_21350 PF00005 ABC transporter CFI11_21355 PF01297 Zinc-uptake complex component A periplasmic CFI11_21360 PF01791 DeoC/LacD family aldolase CFI11_21365 PF00171 Aldehyde dehydrogenase family CFI11_21375 PF05193 Peptidase M16 inactive domain CFI11_21380 PF05193 Peptidase M16 inactive domain CFI11_21380 PF00675 Insulinase (Peptidase family M16) CFI11_21390 PF01252 Signal peptidase (SPase) II CFI11_21395 PF01808 AICARFT/IMPCHase bienzyme CFI11_21395 PF02142 MGS-like domain CFI11_21405 PF01029 NusB family CFI11_21405 PF01189 16S rRNA methyltransferase RsmB/F CFI11_21420 PF05173 Dihydrodipicolinate reductase, C-terminus CFI11_21420 PF01113 Dihydrodipicolinate reductase, N-terminus CFI11_21425 PF02033 Ribosome-binding factor A CFI11_21430 PF09992 Phosphodiester glycosidase CFI11_21435 PF01509 TruB family pseudouridylate synthase (N terminal domain) CFI11_21435 PF16198 tRNA pseudouridylate synthase B C-terminal domain CFI11_21450 PF00312 Ribosomal protein S15 CFI11_21455 PF00326 Prolyl oligopeptidase family CFI11_21460 PF00013 KH domain CFI11_21460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CFI11_21460 PF01138 3' exoribonuclease family, domain 1 CFI11_21460 PF03725 3' exoribonuclease family, domain 2 CFI11_21460 PF00575 S1 RNA binding domain CFI11_21470 PF10417 C-terminal domain of 1-Cys peroxiredoxin CFI11_21470 PF00578 AhpC/TSA family CFI11_21475 PF00171 Aldehyde dehydrogenase family CFI11_21480 PF01531 Glycosyl transferase family 11 CFI11_21485 PF00849 RNA pseudouridylate synthase CFI11_21495 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_21495 PF01266 FAD dependent oxidoreductase CFI11_21495 PF01571 Aminomethyltransferase folate-binding domain CFI11_21495 PF16350 FAD dependent oxidoreductase central domain CFI11_21505 PF01266 FAD dependent oxidoreductase CFI11_21505 PF01571 Aminomethyltransferase folate-binding domain CFI11_21505 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFI11_21505 PF16350 FAD dependent oxidoreductase central domain CFI11_21515 PF01810 LysE type translocator CFI11_21530 PF00108 Thiolase, N-terminal domain CFI11_21530 PF02803 Thiolase, C-terminal domain CFI11_21535 PF01740 STAS domain CFI11_21570 PF09397 Ftsk gamma domain CFI11_21570 PF01580 FtsK/SpoIIIE family CFI11_21570 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CFI11_21570 PF17854 FtsK alpha domain CFI11_21575 PF00155 Aminotransferase class I and II CFI11_21580 PF01425 Amidase CFI11_21585 PF01494 FAD binding domain CFI11_21590 PF03966 Trm112p-like protein CFI11_21600 PF00085 Thioredoxin CFI11_21605 PF03372 Endonuclease/Exonuclease/phosphatase family CFI11_21620 PF00072 Response regulator receiver domain CFI11_21620 PF00486 Transcriptional regulatory protein, C terminal CFI11_21625 PF00925 GTP cyclohydrolase II CFI11_21640 PF01168 Alanine racemase, N-terminal domain CFI11_21655 PF12100 Domain of unknown function (DUF3576) CFI11_21660 PF09334 tRNA synthetases class I (M) CFI11_21660 PF00133 tRNA synthetases class I (I, L, M and V) CFI11_21660 PF13603 Leucyl-tRNA synthetase, Domain 2 CFI11_21660 PF08264 Anticodon-binding domain of tRNA CFI11_21675 PF02798 Glutathione S-transferase, N-terminal domain CFI11_21675 PF14497 Glutathione S-transferase, C-terminal domain CFI11_21690 PF00378 Enoyl-CoA hydratase/isomerase CFI11_21705 PF01523 Putative modulator of DNA gyrase CFI11_21710 PF00459 Inositol monophosphatase family CFI11_21725 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CFI11_21730 PF02515 CoA-transferase family III CFI11_21735 PF13462 Thioredoxin CFI11_21735 PF06965 Na+/H+ antiporter 1 CFI11_21745 PF10576 Iron-sulfur binding domain of endonuclease III CFI11_21745 PF00633 Helix-hairpin-helix motif CFI11_21745 PF00730 HhH-GPD superfamily base excision DNA repair protein CFI11_21745 PF14815 NUDIX domain CFI11_21755 PF00487 Fatty acid desaturase CFI11_21765 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_21765 PF00072 Response regulator receiver domain CFI11_21780 PF01555 DNA methylase CFI11_21780 PF18755 Restriction Enzyme Adenine Methylase Associated CFI11_21785 PF01351 Ribonuclease HII CFI11_21790 PF00682 HMGL-like CFI11_21790 PF08502 LeuA allosteric (dimerisation) domain CFI11_21795 PF00106 short chain dehydrogenase CFI11_21800 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CFI11_21815 PF03466 LysR substrate binding domain CFI11_21815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_21910 PF00589 Phage integrase family CFI11_21910 PF02899 Phage integrase, N-terminal SAM-like domain CFI11_21965 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_21965 PF05362 Lon protease (S16) C-terminal proteolytic domain CFI11_21965 PF02190 ATP-dependent protease La (LON) substrate-binding domain CFI11_21975 PF00356 Bacterial regulatory proteins, lacI family CFI11_21975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CFI11_21980 PF06224 Winged helix DNA-binding domain CFI11_21990 PF01202 Shikimate kinase CFI11_22000 PF00258 Flavodoxin CFI11_22025 PF00501 AMP-binding enzyme CFI11_22025 PF13193 AMP-binding enzyme C-terminal domain CFI11_22035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_22045 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_22050 PF01494 FAD binding domain CFI11_22055 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_22060 PF07883 Cupin domain CFI11_22065 PF01970 Tripartite tricarboxylate transporter TctA family CFI11_22080 PF00486 Transcriptional regulatory protein, C terminal CFI11_22080 PF00072 Response regulator receiver domain CFI11_22085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_22085 PF00512 His Kinase A (phospho-acceptor) domain CFI11_22130 PF01209 ubiE/COQ5 methyltransferase family CFI11_22145 PF00005 ABC transporter CFI11_22155 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22160 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22170 PF08241 Methyltransferase domain CFI11_22185 PF00356 Bacterial regulatory proteins, lacI family CFI11_22215 PF00202 Aminotransferase class-III CFI11_22225 PF16868 NMT1-like family CFI11_22235 PF00582 Universal stress protein family CFI11_22250 PF00890 FAD binding domain CFI11_22250 PF04205 FMN-binding domain CFI11_22290 PF00486 Transcriptional regulatory protein, C terminal CFI11_22295 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFI11_22295 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFI11_22300 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_22300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_22300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_22320 PF05114 Protein of unknown function (DUF692) CFI11_22350 PF01321 Creatinase/Prolidase N-terminal domain CFI11_22350 PF00557 Metallopeptidase family M24 CFI11_22360 PF04072 Leucine carboxyl methyltransferase CFI11_22365 PF00202 Aminotransferase class-III CFI11_22370 PF13193 AMP-binding enzyme C-terminal domain CFI11_22370 PF00668 Condensation domain CFI11_22370 PF00550 Phosphopantetheine attachment site CFI11_22370 PF00501 AMP-binding enzyme CFI11_22375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFI11_22375 PF00205 Thiamine pyrophosphate enzyme, central domain CFI11_22375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFI11_22390 PF00501 AMP-binding enzyme CFI11_22390 PF13193 AMP-binding enzyme C-terminal domain CFI11_22390 PF00668 Condensation domain CFI11_22390 PF00550 Phosphopantetheine attachment site CFI11_22395 PF16911 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus CFI11_22410 PF00557 Metallopeptidase family M24 CFI11_22410 PF01321 Creatinase/Prolidase N-terminal domain CFI11_22420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_22430 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22440 PF00005 ABC transporter CFI11_22440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_22445 PF00005 ABC transporter CFI11_22445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_22450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_22455 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22460 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_22460 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22460 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22460 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_22465 PF00005 ABC transporter CFI11_22465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_22470 PF00005 ABC transporter CFI11_22475 PF02653 Branched-chain amino acid transport system / permease component CFI11_22495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_22495 PF03466 LysR substrate binding domain CFI11_22505 PF10609 NUBPL iron-transfer P-loop NTPase CFI11_22510 PF01106 NifU-like domain CFI11_22510 PF01521 Iron-sulphur cluster biosynthesis CFI11_22515 PF00682 HMGL-like CFI11_22520 PF02515 CoA-transferase family III CFI11_22525 PF00330 Aconitase family (aconitate hydratase) CFI11_22530 PF00694 Aconitase C-terminal domain CFI11_22535 PF02538 Hydantoinase B/oxoprolinase CFI11_22540 PF01968 Hydantoinase/oxoprolinase CFI11_22540 PF05378 Hydantoinase/oxoprolinase N-terminal region CFI11_22550 PF00392 Bacterial regulatory proteins, gntR family CFI11_22550 PF07702 UTRA domain CFI11_22555 PF16347 Domain of unknown function (DUF4976) CFI11_22555 PF00884 Sulfatase CFI11_22565 PF16868 NMT1-like family CFI11_22570 PF03466 LysR substrate binding domain CFI11_22570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_22585 PF00149 Calcineurin-like phosphoesterase CFI11_22590 PF00158 Sigma-54 interaction domain CFI11_22590 PF00072 Response regulator receiver domain CFI11_22590 PF02954 Bacterial regulatory protein, Fis family CFI11_22595 PF13426 PAS domain CFI11_22595 PF13188 PAS domain CFI11_22595 PF00989 PAS fold CFI11_22595 PF00512 His Kinase A (phospho-acceptor) domain CFI11_22595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFI11_22600 PF00034 Cytochrome c CFI11_22600 PF03150 Di-haem cytochrome c peroxidase CFI11_22600 PF14376 Haem-binding domain CFI11_22610 PF00175 Oxidoreductase NAD-binding domain CFI11_22610 PF00970 Oxidoreductase FAD-binding domain CFI11_22610 PF00111 2Fe-2S iron-sulfur cluster binding domain CFI11_22615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_22615 PF03466 LysR substrate binding domain CFI11_22620 PF03466 LysR substrate binding domain CFI11_22620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_22635 PF13677 Membrane MotB of proton-channel complex MotA/MotB CFI11_22635 PF00691 OmpA family CFI11_22655 PF16671 Actin cross-linking domain CFI11_22655 PF04717 Type VI secretion system, phage-baseplate injector CFI11_22665 PF17871 AAA lid domain CFI11_22665 PF00004 ATPase family associated with various cellular activities (AAA) CFI11_22665 PF10431 C-terminal, D2-small domain, of ClpB protein CFI11_22665 PF07724 AAA domain (Cdc48 subfamily) CFI11_22705 PF03793 PASTA domain CFI11_22705 PF00069 Protein kinase domain CFI11_22720 PF01594 AI-2E family transporter CFI11_22765 PF00211 Adenylate and Guanylate cyclase catalytic domain CFI11_22765 PF00672 HAMP domain CFI11_22765 PF02743 Cache domain CFI11_22775 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFI11_22795 PF13439 Glycosyltransferase Family 4 CFI11_22795 PF00534 Glycosyl transferases group 1 CFI11_22805 PF03466 LysR substrate binding domain CFI11_22805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_22815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_22825 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_22830 PF00392 Bacterial regulatory proteins, gntR family CFI11_22830 PF07729 FCD domain CFI11_22840 PF01678 Diaminopimelate epimerase CFI11_22845 PF04055 Radical SAM superfamily CFI11_22845 PF00919 Uncharacterized protein family UPF0004 CFI11_22850 PF00027 Cyclic nucleotide-binding domain CFI11_22850 PF13545 Crp-like helix-turn-helix domain CFI11_22855 PF02167 Cytochrome C1 family CFI11_22860 PF00033 Cytochrome b/b6/petB CFI11_22860 PF00032 Cytochrome b(C-terminal)/b6/petD CFI11_22865 PF00355 Rieske [2Fe-2S] domain CFI11_22865 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CFI11_22870 PF13417 Glutathione S-transferase, N-terminal domain CFI11_22870 PF00043 Glutathione S-transferase, C-terminal domain CFI11_22875 PF04299 Putative FMN-binding domain CFI11_22880 PF00885 6,7-dimethyl-8-ribityllumazine synthase CFI11_22885 PF00005 ABC transporter CFI11_22890 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_22900 PF01264 Chorismate synthase CFI11_22905 PF04055 Radical SAM superfamily CFI11_22925 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_22930 PF00132 Bacterial transferase hexapeptide (six repeats) CFI11_22930 PF14602 Hexapeptide repeat of succinyl-transferase CFI11_22930 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CFI11_22950 PF07687 Peptidase dimerisation domain CFI11_22950 PF01546 Peptidase family M20/M25/M40 CFI11_22955 PF08461 Ribonuclease R winged-helix domain CFI11_22955 PF08206 Ribonuclease B OB domain CFI11_22955 PF00773 RNB domain CFI11_22955 PF17876 Cold shock domain CFI11_22955 PF00575 S1 RNA binding domain CFI11_22975 PF01593 Flavin containing amine oxidoreductase CFI11_22985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CFI11_22985 PF12833 Helix-turn-helix domain CFI11_23005 PF01968 Hydantoinase/oxoprolinase CFI11_23005 PF05378 Hydantoinase/oxoprolinase N-terminal region CFI11_23010 PF08331 Domain of unknown function (DUF1730) CFI11_23015 PF00043 Glutathione S-transferase, C-terminal domain CFI11_23015 PF13417 Glutathione S-transferase, N-terminal domain CFI11_23020 PF00912 Transglycosylase CFI11_23025 PF00310 Glutamine amidotransferases class-II CFI11_23025 PF04898 Glutamate synthase central domain CFI11_23025 PF01645 Conserved region in glutamate synthase CFI11_23025 PF01493 GXGXG motif CFI11_23045 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFI11_23045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFI11_23050 PF02673 Bacitracin resistance protein BacA CFI11_23075 PF01612 3'-5' exonuclease CFI11_23075 PF00570 HRDC domain CFI11_23080 PF00571 CBS domain CFI11_23080 PF01380 SIS domain CFI11_23095 PF00005 ABC transporter CFI11_23100 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CFI11_23100 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CFI11_23105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CFI11_23125 PF00534 Glycosyl transferases group 1 CFI11_23125 PF13439 Glycosyltransferase Family 4 CFI11_23130 PF16363 GDP-mannose 4,6 dehydratase CFI11_23135 PF00483 Nucleotidyl transferase CFI11_23145 PF02348 Cytidylyltransferase CFI11_23150 PF00459 Inositol monophosphatase family CFI11_23165 PF13532 2OG-Fe(II) oxygenase superfamily CFI11_23175 PF00012 Hsp70 protein CFI11_23180 PF01556 DnaJ C terminal domain CFI11_23180 PF00684 DnaJ central domain CFI11_23180 PF00226 DnaJ domain CFI11_23190 PF04002 RadC-like JAB domain CFI11_23195 PF12849 PBP superfamily domain CFI11_23205 PF01043 SecA preprotein cross-linking domain CFI11_23205 PF02810 SEC-C motif CFI11_23205 PF07517 SecA DEAD-like domain CFI11_23205 PF07516 SecA Wing and Scaffold domain CFI11_23210 PF05698 Bacterial trigger factor protein (TF) C-terminus CFI11_23215 PF01960 ArgJ family CFI11_23220 PF00293 NUDIX domain CFI11_23230 PF04760 Translation initiation factor IF-2, N-terminal region CFI11_23230 PF08364 Bacterial translation initiation factor IF-2 associated region CFI11_23230 PF11987 Translation-initiation factor 2 CFI11_23230 PF00009 Elongation factor Tu GTP binding domain CFI11_23240 PF13184 NusA-like KH domain CFI11_23240 PF08529 NusA N-terminal domain CFI11_23240 PF00575 S1 RNA binding domain CFI11_23245 PF17384 RimP C-terminal SH3 domain CFI11_23245 PF02576 RimP N-terminal domain CFI11_23255 PF00561 alpha/beta hydrolase fold CFI11_23270 PF00795 Carbon-nitrogen hydrolase CFI11_23275 PF00462 Glutaredoxin CFI11_23280 PF00156 Phosphoribosyl transferase domain CFI11_23285 PF08241 Methyltransferase domain CFI11_23290 PF00762 Ferrochelatase CFI11_23300 PF03734 L,D-transpeptidase catalytic domain CFI11_23310 PF03734 L,D-transpeptidase catalytic domain CFI11_23320 PF05958 tRNA (Uracil-5-)-methyltransferase CFI11_23325 PF00005 ABC transporter CFI11_23325 PF00664 ABC transporter transmembrane region CFI11_23330 PF00005 ABC transporter CFI11_23330 PF00664 ABC transporter transmembrane region CFI11_23335 PF01743 Poly A polymerase head domain CFI11_23335 PF12627 Probable RNA and SrmB- binding site of polymerase A CFI11_23335 PF13735 tRNA nucleotidyltransferase domain 2 putative CFI11_23340 PF00293 NUDIX domain CFI11_23345 PF01430 Hsp33 protein CFI11_23350 PF00293 NUDIX domain CFI11_23355 PF00486 Transcriptional regulatory protein, C terminal CFI11_23355 PF00072 Response regulator receiver domain CFI11_23365 PF00106 short chain dehydrogenase CFI11_23370 PF00291 Pyridoxal-phosphate dependent enzyme CFI11_23370 PF00585 C-terminal regulatory domain of Threonine dehydratase CFI11_23380 PF00764 Arginosuccinate synthase CFI11_23395 PF01063 Amino-transferase class IV CFI11_23400 PF01625 Peptide methionine sulfoxide reductase CFI11_23405 PF00294 pfkB family carbohydrate kinase CFI11_23410 PF00390 Malic enzyme, N-terminal domain CFI11_23410 PF03949 Malic enzyme, NAD binding domain CFI11_23410 PF01515 Phosphate acetyl/butaryl transferase CFI11_23415 PF05190 MutS family domain IV CFI11_23415 PF00488 MutS domain V CFI11_23415 PF05192 MutS domain III CFI11_23415 PF01624 MutS domain I CFI11_23415 PF05188 MutS domain II CFI11_23420 PF01025 GrpE CFI11_23425 PF01628 HrcA protein C terminal domain CFI11_23430 PF01138 3' exoribonuclease family, domain 1 CFI11_23430 PF03725 3' exoribonuclease family, domain 2 CFI11_23435 PF01725 Ham1 family CFI11_23440 PF06969 HemN C-terminal domain CFI11_23440 PF04055 Radical SAM superfamily CFI11_23445 PF17762 HTH domain found in ParB protein CFI11_23445 PF02195 ParB-like nuclease domain CFI11_23450 PF13614 AAA domain CFI11_23455 PF02527 rRNA small subunit methyltransferase G CFI11_23460 PF01134 Glucose inhibited division protein A CFI11_23460 PF13932 GidA associated domain CFI11_23465 PF01926 50S ribosome-binding GTPase CFI11_23465 PF12631 MnmE helical domain CFI11_23465 PF10396 GTP-binding protein TrmE N-terminus CFI11_23470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFI11_23470 PF07497 Rho termination factor, RNA-binding domain CFI11_23470 PF07498 Rho termination factor, N-terminal domain CFI11_23480 PF13614 AAA domain CFI11_23485 PF17762 HTH domain found in ParB protein CFI11_23485 PF02195 ParB-like nuclease domain CFI11_23490 PF00561 alpha/beta hydrolase fold CFI11_23495 PF17863 AAA lid domain CFI11_23500 PF17863 AAA lid domain CFI11_23500 PF01078 Magnesium chelatase, subunit ChlI CFI11_23510 PF01593 Flavin containing amine oxidoreductase CFI11_23520 PF03073 TspO/MBR family CFI11_23530 PF01593 Flavin containing amine oxidoreductase CFI11_23535 PF00348 Polyprenyl synthetase CFI11_23540 PF00891 O-methyltransferase domain CFI11_23540 PF16864 Dimerisation domain CFI11_23550 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CFI11_23555 PF00148 Nitrogenase component 1 type Oxidoreductase CFI11_23560 PF08369 Proto-chlorophyllide reductase 57 kD subunit CFI11_23560 PF00148 Nitrogenase component 1 type Oxidoreductase CFI11_23565 PF05398 PufQ cytochrome subunit CFI11_23570 PF00556 Antenna complex alpha/beta subunit CFI11_23575 PF00556 Antenna complex alpha/beta subunit CFI11_23580 PF00124 Photosynthetic reaction centre protein CFI11_23585 PF00124 Photosynthetic reaction centre protein CFI11_23590 PF02276 Photosynthetic reaction centre cytochrome C subunit CFI11_23595 PF02780 Transketolase, C-terminal domain CFI11_23595 PF02779 Transketolase, pyrimidine binding domain CFI11_23595 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CFI11_23600 PF00561 alpha/beta hydrolase fold CFI11_23605 PF03576 Peptidase family S58 CFI11_23610 PF07883 Cupin domain CFI11_23620 PF00171 Aldehyde dehydrogenase family CFI11_23630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_23630 PF00005 ABC transporter CFI11_23640 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_23645 PF00850 Histone deacetylase domain CFI11_23650 PF00266 Aminotransferase class-V CFI11_23655 PF01545 Cation efflux family CFI11_23660 PF02583 Metal-sensitive transcriptional repressor CFI11_23665 PF01040 UbiA prenyltransferase family CFI11_23670 PF03209 PUCC protein CFI11_23680 PF00293 NUDIX domain CFI11_23685 PF01494 FAD binding domain CFI11_23690 PF16363 GDP-mannose 4,6 dehydratase CFI11_23700 PF02563 Polysaccharide biosynthesis/export protein CFI11_23710 PF02397 Bacterial sugar transferase CFI11_23715 PF02719 Polysaccharide biosynthesis protein CFI11_23720 PF06082 Exopolysaccharide biosynthesis protein YbjH CFI11_23735 PF00294 pfkB family carbohydrate kinase CFI11_23740 PF00356 Bacterial regulatory proteins, lacI family CFI11_23745 PF17912 MalK OB fold domain CFI11_23745 PF00005 ABC transporter CFI11_23755 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_23760 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_23775 PF03928 Haem-degrading CFI11_23780 PF00107 Zinc-binding dehydrogenase CFI11_23780 PF08240 Alcohol dehydrogenase GroES-like domain CFI11_23790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_23790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFI11_23800 PF01979 Amidohydrolase family CFI11_23805 PF07702 UTRA domain CFI11_23805 PF00392 Bacterial regulatory proteins, gntR family CFI11_23810 PF02515 CoA-transferase family III CFI11_23815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_23825 PF02954 Bacterial regulatory protein, Fis family CFI11_23825 PF13426 PAS domain CFI11_23825 PF13188 PAS domain CFI11_23835 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) CFI11_23840 PF00148 Nitrogenase component 1 type Oxidoreductase CFI11_23845 PF08369 Proto-chlorophyllide reductase 57 kD subunit CFI11_23845 PF00148 Nitrogenase component 1 type Oxidoreductase CFI11_23850 PF02514 CobN/Magnesium Chelatase CFI11_23850 PF11965 Domain of unknown function (DUF3479) CFI11_23855 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CFI11_23860 PF05175 Methyltransferase small domain CFI11_23860 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus CFI11_23865 PF03209 PUCC protein CFI11_23870 PF05239 PRC-barrel domain CFI11_23870 PF03967 Photosynthetic reaction centre, H-chain N-terminal region CFI11_23875 PF03703 Bacterial PH domain CFI11_23890 PF02915 Rubrerythrin CFI11_23895 PF12291 Protein of unknown function (DUF3623) CFI11_23900 PF00155 Aminotransferase class I and II CFI11_23910 PF13181 Tetratricopeptide repeat CFI11_23915 PF01850 PIN domain CFI11_23930 PF10134 Replication initiator protein A CFI11_23935 PF01050 Mannose-6-phosphate isomerase CFI11_23935 PF00483 Nucleotidyl transferase CFI11_23940 PF16363 GDP-mannose 4,6 dehydratase CFI11_23945 PF01370 NAD dependent epimerase/dehydratase family CFI11_23950 PF03275 UDP-galactopyranose mutase CFI11_23970 PF00535 Glycosyl transferase family 2 CFI11_24010 PF00005 ABC transporter CFI11_24015 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CFI11_24015 PF00413 Matrixin CFI11_24015 PF08548 Peptidase M10 serralysin C terminal CFI11_24025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CFI11_24030 PF16363 GDP-mannose 4,6 dehydratase CFI11_24035 PF04321 RmlD substrate binding domain CFI11_24040 PF00483 Nucleotidyl transferase CFI11_24110 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFI11_24110 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFI11_24110 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFI11_24145 PF13614 AAA domain CFI11_24145 PF00376 MerR family regulatory protein CFI11_24150 PF13614 AAA domain CFI11_24160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFI11_24160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFI11_24165 PF13378 Enolase C-terminal domain-like CFI11_24165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFI11_24170 PF14489 QueF-like protein CFI11_24185 PF00356 Bacterial regulatory proteins, lacI family CFI11_24185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CFI11_24190 PF01370 NAD dependent epimerase/dehydratase family CFI11_24195 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_24205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_24210 PF17042 Nucleotide-binding C-terminal domain CFI11_24210 PF07005 Sugar-binding N-terminal domain CFI11_24215 PF00596 Class II Aldolase and Adducin N-terminal domain CFI11_24220 PF01261 Xylose isomerase-like TIM barrel CFI11_24225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFI11_24225 PF03466 LysR substrate binding domain CFI11_24230 PF01244 Membrane dipeptidase (Peptidase family M19) CFI11_24235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFI11_24240 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_24245 PF12911 N-terminal TM domain of oligopeptide transport permease C CFI11_24245 PF00528 Binding-protein-dependent transport system inner membrane component CFI11_24250 PF00005 ABC transporter CFI11_24250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_24255 PF00005 ABC transporter CFI11_24255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFI11_24270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFI11_24270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFI11_24275 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFI11_24280 PF00920 Dehydratase family CFI11_24290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFI11_24290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFI11_24295 PF07729 FCD domain CFI11_24295 PF00392 Bacterial regulatory proteins, gntR family CFI11_24300 PF03480 Bacterial extracellular solute-binding protein, family 7 CFI11_24310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CFI11_24315 PF08666 SAF domain CFI11_24315 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CFI11_24320 PF03435 Saccharopine dehydrogenase NADP binding domain CFI11_24320 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CFI11_24320 PF08501 Shikimate dehydrogenase substrate binding domain CFI11_24330 PF00892 EamA-like transporter family CFI11_24335 PF01232 Mannitol dehydrogenase Rossmann domain CFI11_24335 PF08125 Mannitol dehydrogenase C-terminal domain CFI11_24340 PF02614 Glucuronate isomerase CFI11_24355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFI11_24355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFI11_24360 PF03786 D-mannonate dehydratase (UxuA) CFI11_24415 PF03466 LysR substrate binding domain CFI11_24415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family