locus-tag class description TOL_0001 PF11638 DnaA N-terminal domain TOL_0001 PF08299 Bacterial dnaA protein helix-turn-helix TOL_0001 PF00308 Bacterial dnaA protein TOL_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain TOL_0002 PF02767 DNA polymerase III beta subunit, central domain TOL_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain TOL_0003 PF02463 RecF/RecN/SMC N terminal domain TOL_0010 PF12146 Serine aminopeptidase, S33 TOL_0011 PF01527 Transposase TOL_0012 PF13333 Integrase core domain TOL_0012 PF00665 Integrase core domain TOL_0012 PF13276 HTH-like domain TOL_0027 PF00563 EAL domain TOL_0027 PF00990 Diguanylate cyclase, GGDEF domain TOL_0027 PF03707 Bacterial signalling protein N terminal repeat TOL_0029 PF05728 Uncharacterised protein family (UPF0227) TOL_0036 PF01370 NAD dependent epimerase/dehydratase family TOL_0052 PF17841 BID domain of Bartonella effector protein (Bep) TOL_0052 PF02661 Fic/DOC family TOL_0060 PF08281 Sigma-70, region 4 TOL_0060 PF04542 Sigma-70 region 2 TOL_0072 PF01380 SIS domain TOL_0073 PF08220 DeoR-like helix-turn-helix domain TOL_0073 PF00455 DeoR C terminal sensor domain TOL_0082 PF05199 GMC oxidoreductase TOL_0082 PF00732 GMC oxidoreductase TOL_0085 PF01636 Phosphotransferase enzyme family TOL_0086 PF10005 zinc-ribbon domain TOL_0086 PF15887 Putative zinc-binding metallo-peptidase TOL_0090 PF04973 Nicotinamide mononucleotide transporter TOL_0114 PF08501 Shikimate dehydrogenase substrate binding domain TOL_0114 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TOL_0114 PF01488 Shikimate / quinate 5-dehydrogenase TOL_0115 PF01218 Coproporphyrinogen III oxidase TOL_0116 PF01300 Telomere recombination TOL_0118 PF02481 DNA recombination-mediator protein A TOL_0118 PF17782 DprA winged helix domain TOL_0121 PF02911 Formyl transferase, C-terminal domain TOL_0121 PF00551 Formyl transferase TOL_0122 PF01189 16S rRNA methyltransferase RsmB/F TOL_0122 PF01029 NusB family TOL_0123 PF02080 TrkA-C domain TOL_0123 PF02254 TrkA-N domain TOL_0126 PF00582 Universal stress protein family TOL_0127 PF08281 Sigma-70, region 4 TOL_0127 PF04542 Sigma-70 region 2 TOL_0136 PF00448 SRP54-type protein, GTPase domain TOL_0136 PF02881 SRP54-type protein, helical bundle domain TOL_0137 PF00005 ABC transporter TOL_0138 PF18075 FtsX extracellular domain TOL_0142 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TOL_0145 PF00528 Binding-protein-dependent transport system inner membrane component TOL_0146 PF00528 Binding-protein-dependent transport system inner membrane component TOL_0147 PF00005 ABC transporter TOL_0151 PF00486 Transcriptional regulatory protein, C terminal TOL_0151 PF00072 Response regulator receiver domain TOL_0157 PF00072 Response regulator receiver domain TOL_0158 PF00512 His Kinase A (phospho-acceptor) domain TOL_0158 PF00989 PAS fold TOL_0158 PF11808 Phosphate regulon sensor protein PhoR TOL_0158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_0163 PF18113 Rubredoxin binding C-terminal domain TOL_0163 PF07992 Pyridine nucleotide-disulphide oxidoreductase TOL_0164 PF00216 Bacterial DNA-binding protein TOL_0167 PF00375 Sodium:dicarboxylate symporter family TOL_0170 PF00270 DEAD/DEAH box helicase TOL_0170 PF17191 RecG wedge domain TOL_0170 PF00271 Helicase conserved C-terminal domain TOL_0175 PF02824 TGS domain TOL_0175 PF13291 ACT domain TOL_0175 PF04607 Region found in RelA / SpoT proteins TOL_0176 PF01192 RNA polymerase Rpb6 TOL_0177 PF00625 Guanylate kinase TOL_0188 PF12161 HsdM N-terminal domain TOL_0188 PF02384 N-6 DNA Methylase TOL_0192 PF00069 Protein kinase domain TOL_0192 PF03793 PASTA domain TOL_0209 PF00692 dUTPase TOL_0219 PF00037 4Fe-4S binding domain TOL_0231 PF00902 Sec-independent protein translocase protein (TatC) TOL_0232 PF02416 mttA/Hcf106 family TOL_0233 PF02416 mttA/Hcf106 family TOL_0234 PF01230 HIT domain TOL_0235 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TOL_0236 PF01502 Phosphoribosyl-AMP cyclohydrolase TOL_0242 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TOL_0242 PF00072 Response regulator receiver domain TOL_0242 PF01627 Hpt domain TOL_0242 PF00512 His Kinase A (phospho-acceptor) domain TOL_0242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_0242 PF00672 HAMP domain TOL_0244 PF00593 TonB dependent receptor TOL_0244 PF07715 TonB-dependent Receptor Plug Domain TOL_0251 PF01435 Peptidase family M48 TOL_0252 PF04011 LemA family TOL_0254 PF13617 YnbE-like lipoprotein TOL_0260 PF01678 Diaminopimelate epimerase TOL_0261 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TOL_0261 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TOL_0265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TOL_0265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TOL_0266 PF00156 Phosphoribosyl transferase domain TOL_0267 PF03652 Holliday junction resolvase TOL_0272 PF00072 Response regulator receiver domain TOL_0273 PF01584 CheW-like domain TOL_0274 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TOL_0274 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TOL_0275 PF01739 CheR methyltransferase, SAM binding domain TOL_0275 PF03705 CheR methyltransferase, all-alpha domain TOL_0276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_0276 PF01584 CheW-like domain TOL_0276 PF01627 Hpt domain TOL_0276 PF02895 Signal transducing histidine kinase, homodimeric domain TOL_0276 PF07194 P2 response regulator binding domain TOL_0277 PF01339 CheB methylesterase TOL_0277 PF00072 Response regulator receiver domain TOL_0300 PF00528 Binding-protein-dependent transport system inner membrane component TOL_0308 PF00202 Aminotransferase class-III TOL_0314 PF01521 Iron-sulphur cluster biosynthesis TOL_0328 PF08502 LeuA allosteric (dimerisation) domain TOL_0328 PF00682 HMGL-like TOL_0330 PF00583 Acetyltransferase (GNAT) family TOL_0332 PF00072 Response regulator receiver domain TOL_0332 PF02954 Bacterial regulatory protein, Fis family TOL_0338 PF00570 HRDC domain TOL_0338 PF09382 RQC domain TOL_0338 PF16124 RecQ zinc-binding TOL_0338 PF00271 Helicase conserved C-terminal domain TOL_0338 PF00270 DEAD/DEAH box helicase TOL_0350 PF04362 Bacterial Fe(2+) trafficking TOL_0351 PF00730 HhH-GPD superfamily base excision DNA repair protein TOL_0351 PF14815 NUDIX domain TOL_0351 PF00633 Helix-hairpin-helix motif TOL_0356 PF00117 Glutamine amidotransferase class-I TOL_0357 PF00977 Histidine biosynthesis protein TOL_0362 PF12706 Beta-lactamase superfamily domain TOL_0362 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TOL_0362 PF17770 Ribonuclease J C-terminal domain TOL_0364 PF01145 SPFH domain / Band 7 family TOL_0393 PF05860 haemagglutination activity domain TOL_0402 PF00032 Cytochrome b(C-terminal)/b6/petD TOL_0402 PF00033 Cytochrome b/b6/petB TOL_0424 PF13817 IS66 C-terminal element TOL_0424 PF13005 zinc-finger binding domain of transposase IS66 TOL_0424 PF03050 Transposase IS66 family TOL_0424 PF13007 Transposase C of IS166 homeodomain TOL_0436 PF00873 AcrB/AcrD/AcrF family TOL_0437 PF02464 Competence-damaged protein TOL_0439 PF02631 RecX family TOL_0470 PF06252 Protein of unknown function (DUF1018) TOL_0480 PF08461 Ribonuclease R winged-helix domain TOL_0481 PF11985 Protein of unknown function (DUF3486) TOL_0482 PF03237 Terminase-like family TOL_0483 PF06074 Protein of unknown function (DUF935) TOL_0485 PF04233 Phage Mu protein F like protein TOL_0493 PF10124 Mu-like prophage major head subunit gpT TOL_0499 PF17482 Phage tail sheath C-terminal domain TOL_0499 PF04984 Phage tail sheath protein subtilisin-like domain TOL_0512 PF12729 Four helix bundle sensory module for signal transduction TOL_0512 PF00672 HAMP domain TOL_0512 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TOL_0526 PF00378 Enoyl-CoA hydratase/isomerase TOL_0530 PF00563 EAL domain TOL_0530 PF01590 GAF domain TOL_0530 PF00360 Phytochrome region TOL_0530 PF00990 Diguanylate cyclase, GGDEF domain TOL_0536 PF03050 Transposase IS66 family TOL_0536 PF13005 zinc-finger binding domain of transposase IS66 TOL_0536 PF13817 IS66 C-terminal element TOL_0536 PF13007 Transposase C of IS166 homeodomain TOL_0540 PF09278 MerR, DNA binding TOL_0540 PF00376 MerR family regulatory protein TOL_0541 PF02411 MerT mercuric transport protein TOL_0542 PF00403 Heavy-metal-associated domain TOL_0550 PF00873 AcrB/AcrD/AcrF family TOL_0552 PF01545 Cation efflux family TOL_0553 PF02694 Uncharacterised BCR, YnfA/UPF0060 family TOL_0556 PF00512 His Kinase A (phospho-acceptor) domain TOL_0556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_0556 PF00672 HAMP domain TOL_0559 PF00394 Multicopper oxidase TOL_0559 PF07731 Multicopper oxidase TOL_0559 PF07732 Multicopper oxidase TOL_0560 PF05275 Copper resistance protein B precursor (CopB) TOL_0572 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TOL_0584 PF02152 Dihydroneopterin aldolase TOL_0585 PF00809 Pterin binding enzyme TOL_0585 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TOL_0592 PF04285 Protein of unknown function (DUF444) TOL_0596 PF00149 Calcineurin-like phosphoesterase TOL_0597 PF04379 ApaG domain TOL_0598 PF00398 Ribosomal RNA adenine dimethylase TOL_0599 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TOL_0600 PF00639 PPIC-type PPIASE domain TOL_0600 PF09312 SurA N-terminal domain TOL_0603 PF00483 Nucleotidyl transferase TOL_0605 PF00472 RF-1 domain TOL_0624 PF01618 MotA/TolQ/ExbB proton channel family TOL_0638 PF01636 Phosphotransferase enzyme family TOL_0639 PF00156 Phosphoribosyl transferase domain TOL_0650 PF00117 Glutamine amidotransferase class-I TOL_0651 PF00591 Glycosyl transferase family, a/b domain TOL_0651 PF02885 Glycosyl transferase family, helical bundle domain TOL_0655 PF02566 OsmC-like protein TOL_0658 PF05175 Methyltransferase small domain TOL_0658 PF08468 Methyltransferase small domain N-terminal TOL_0666 PF17149 Periplasmic sensor domain found in signal transduction proteins TOL_0666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_0666 PF00072 Response regulator receiver domain TOL_0666 PF01627 Hpt domain TOL_0666 PF00512 His Kinase A (phospho-acceptor) domain TOL_0666 PF00672 HAMP domain TOL_0669 PF02441 Flavoprotein TOL_0687 PF03884 DNA gyrase inhibitor YacG TOL_0688 PF01121 Dephospho-CoA kinase TOL_0689 PF06750 Bacterial Peptidase A24 N-terminal domain TOL_0689 PF01478 Type IV leader peptidase family TOL_0690 PF00482 Type II secretion system (T2SS), protein F TOL_0700 PF02277 Phosphoribosyltransferase TOL_0702 PF02654 Cobalamin-5-phosphate synthase TOL_0706 PF00456 Transketolase, thiamine diphosphate binding domain TOL_0706 PF17831 Pyruvate dehydrogenase E1 component middle domain TOL_0707 PF00364 Biotin-requiring enzyme TOL_0707 PF02817 e3 binding domain TOL_0707 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TOL_0715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TOL_0715 PF02770 Acyl-CoA dehydrogenase, middle domain TOL_0715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TOL_0716 PF00108 Thiolase, N-terminal domain TOL_0716 PF02803 Thiolase, C-terminal domain TOL_0732 PF09905 DNA-binding protein VF530 TOL_0734 PF00999 Sodium/hydrogen exchanger family TOL_0779 PF08241 Methyltransferase domain TOL_0788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_0788 PF00512 His Kinase A (phospho-acceptor) domain TOL_0789 PF00072 Response regulator receiver domain TOL_0789 PF00486 Transcriptional regulatory protein, C terminal TOL_0794 PF01795 MraW methylase family TOL_0796 PF03717 Penicillin-binding Protein dimerisation domain TOL_0796 PF00905 Penicillin binding protein transpeptidase domain TOL_0797 PF08245 Mur ligase middle domain TOL_0797 PF02875 Mur ligase family, glutamate ligase domain TOL_0797 PF01225 Mur ligase family, catalytic domain TOL_0798 PF08245 Mur ligase middle domain TOL_0798 PF01225 Mur ligase family, catalytic domain TOL_0798 PF02875 Mur ligase family, glutamate ligase domain TOL_0799 PF00953 Glycosyl transferase family 4 TOL_0799 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TOL_0800 PF08245 Mur ligase middle domain TOL_0800 PF02875 Mur ligase family, glutamate ligase domain TOL_0801 PF01098 Cell cycle protein TOL_0802 PF03033 Glycosyltransferase family 28 N-terminal domain TOL_0802 PF04101 Glycosyltransferase family 28 C-terminal domain TOL_0803 PF01225 Mur ligase family, catalytic domain TOL_0803 PF08245 Mur ligase middle domain TOL_0803 PF02875 Mur ligase family, glutamate ligase domain TOL_0804 PF07478 D-ala D-ala ligase C-terminus TOL_0804 PF01820 D-ala D-ala ligase N-terminus TOL_0805 PF08478 POTRA domain, FtsQ-type TOL_0805 PF03799 Cell division protein FtsQ TOL_0806 PF02491 SHS2 domain inserted in FTSA TOL_0807 PF00091 Tubulin/FtsZ family, GTPase domain TOL_0807 PF12327 FtsZ family, C-terminal domain TOL_0810 PF07516 SecA Wing and Scaffold domain TOL_0810 PF02810 SEC-C motif TOL_0810 PF07517 SecA DEAD-like domain TOL_0810 PF01043 SecA preprotein cross-linking domain TOL_0811 PF01960 ArgJ family TOL_0812 PF00293 NUDIX domain TOL_0815 PF00795 Carbon-nitrogen hydrolase TOL_0816 PF03471 Transporter associated domain TOL_0816 PF00571 CBS domain TOL_0817 PF02130 Uncharacterized protein family UPF0054 TOL_0818 PF02562 PhoH-like protein TOL_0827 PF01195 Peptidyl-tRNA hydrolase TOL_0831 PF08544 GHMP kinases C terminal TOL_0831 PF00288 GHMP kinases N terminal domain TOL_0832 PF03550 Outer membrane lipoprotein LolB TOL_0835 PF00472 RF-1 domain TOL_0835 PF03462 PCRF domain TOL_0836 PF13847 Methyltransferase domain TOL_0836 PF17827 PrmC N-terminal domain TOL_0841 PF02021 Uncharacterised protein family UPF0102 TOL_0842 PF04348 LppC putative lipoprotein TOL_0869 PF03186 CobD/Cbib protein TOL_0870 PF00155 Aminotransferase class I and II TOL_0899 PF01618 MotA/TolQ/ExbB proton channel family TOL_0900 PF01618 MotA/TolQ/ExbB proton channel family TOL_0901 PF02472 Biopolymer transport protein ExbD/TolR TOL_0902 PF03544 Gram-negative bacterial TonB protein C-terminal TOL_0906 PF00561 alpha/beta hydrolase fold TOL_0915 PF03872 Anti sigma-E protein RseA, N-terminal domain TOL_0915 PF03873 Anti sigma-E protein RseA, C-terminal domain TOL_0916 PF17188 MucB/RseB C-terminal domain TOL_0916 PF03888 MucB/RseB N-terminal domain TOL_0918 PF13180 PDZ domain TOL_0921 PF14622 Ribonuclease-III-like TOL_0921 PF00035 Double-stranded RNA binding motif TOL_0922 PF07650 KH domain TOL_0922 PF01926 50S ribosome-binding GTPase TOL_0923 PF02565 Recombination protein O C terminal TOL_0923 PF11967 Recombination protein O N terminal TOL_0924 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TOL_0925 PF01648 4'-phosphopantetheinyl transferase superfamily TOL_0929 PF04607 Region found in RelA / SpoT proteins TOL_0929 PF13291 ACT domain TOL_0929 PF02824 TGS domain TOL_0937 PF02673 Bacitracin resistance protein BacA TOL_0945 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_0949 PF04055 Radical SAM superfamily TOL_0951 PF04551 GcpE protein TOL_0952 PF03129 Anticodon binding domain TOL_0952 PF13393 Histidyl-tRNA synthetase TOL_0964 PF02492 CobW/HypB/UreG, nucleotide-binding domain TOL_0965 PF01730 UreF TOL_0966 PF02814 UreE urease accessory protein, N-terminal domain TOL_0966 PF05194 UreE urease accessory protein, C-terminal domain TOL_0967 PF00449 Urease alpha-subunit, N-terminal domain TOL_0967 PF01979 Amidohydrolase family TOL_0968 PF00699 Urease beta subunit TOL_0969 PF00547 Urease, gamma subunit TOL_0976 PF01894 Uncharacterised protein family UPF0047 TOL_0978 PF11867 Domain of unknown function (DUF3387) TOL_0978 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TOL_0978 PF18766 SWI2/SNF2 ATPase TOL_0980 PF17191 RecG wedge domain TOL_0980 PF00270 DEAD/DEAH box helicase TOL_0980 PF13749 Putative ATP-dependent DNA helicase recG C-terminal TOL_0982 PF06250 YhcG PDDEXK nuclease domain TOL_0982 PF17761 DUF1016 N-terminal domain TOL_0983 PF02384 N-6 DNA Methylase TOL_0983 PF12161 HsdM N-terminal domain TOL_1013 PF01026 TatD related DNase TOL_1016 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain TOL_1016 PF01464 Transglycosylase SLT domain TOL_1025 PF17768 RecJ OB domain TOL_1025 PF02272 DHHA1 domain TOL_1025 PF01368 DHH family TOL_1034 PF00106 short chain dehydrogenase TOL_1037 PF05193 Peptidase M16 inactive domain TOL_1037 PF00675 Insulinase (Peptidase family M16) TOL_1037 PF16187 Middle or third domain of peptidase_M16 TOL_1055 PF07085 DRTGG domain TOL_1055 PF01515 Phosphate acetyl/butaryl transferase TOL_1056 PF00871 Acetokinase family TOL_1073 PF03379 CcmB protein TOL_1074 PF01578 Cytochrome C assembly protein TOL_1075 PF04995 Heme exporter protein D (CcmD) TOL_1076 PF03100 CcmE TOL_1077 PF01578 Cytochrome C assembly protein TOL_1077 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TOL_1078 PF08534 Redoxin TOL_1079 PF03918 Cytochrome C biogenesis protein TOL_1083 PF04972 BON domain TOL_1083 PF00691 OmpA family TOL_1100 PF00990 Diguanylate cyclase, GGDEF domain TOL_1100 PF00563 EAL domain TOL_1100 PF13426 PAS domain TOL_1136 PF00149 Calcineurin-like phosphoesterase TOL_1137 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease TOL_1137 PF01694 Rhomboid family TOL_1140 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TOL_1140 PF01433 Peptidase family M1 domain TOL_1140 PF11940 Domain of unknown function (DUF3458) Ig-like fold TOL_1152 PF00873 AcrB/AcrD/AcrF family TOL_1188 PF13519 von Willebrand factor type A domain TOL_1188 PF07584 Aerotolerance regulator N-terminal TOL_1190 PF01882 Protein of unknown function DUF58 TOL_1191 PF17863 AAA lid domain TOL_1191 PF07726 ATPase family associated with various cellular activities (AAA) TOL_1209 PF02146 Sir2 family TOL_1224 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TOL_1232 PF12794 Mechanosensitive ion channel inner membrane domain 1 TOL_1232 PF12795 Mechanosensitive ion channel porin domain TOL_1232 PF00924 Mechanosensitive ion channel TOL_1243 PF01206 Sulfurtransferase TusA TOL_1247 PF00929 Exonuclease TOL_1247 PF08411 Exonuclease C-terminal TOL_1255 PF00270 DEAD/DEAH box helicase TOL_1255 PF03880 DbpA RNA binding domain TOL_1255 PF00271 Helicase conserved C-terminal domain TOL_1260 PF01551 Peptidase family M23 TOL_1260 PF08525 Opacity-associated protein A N-terminal motif TOL_1260 PF01476 LysM domain TOL_1287 PF03050 Transposase IS66 family TOL_1287 PF13005 zinc-finger binding domain of transposase IS66 TOL_1287 PF13817 IS66 C-terminal element TOL_1287 PF13007 Transposase C of IS166 homeodomain TOL_1299 PF02424 ApbE family TOL_1302 PF00578 AhpC/TSA family TOL_1313 PF07549 SecD/SecF GG Motif TOL_1313 PF13721 SecD export protein N-terminal TM region TOL_1313 PF02355 Protein export membrane protein TOL_1323 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TOL_1323 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TOL_1338 PF13333 Integrase core domain TOL_1338 PF13276 HTH-like domain TOL_1338 PF00665 Integrase core domain TOL_1346 PF13649 Methyltransferase domain TOL_1347 PF01546 Peptidase family M20/M25/M40 TOL_1347 PF07687 Peptidase dimerisation domain TOL_1358 PF00873 AcrB/AcrD/AcrF family TOL_1371 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_1373 PF02222 ATP-grasp domain TOL_1373 PF01370 NAD dependent epimerase/dehydratase family TOL_1399 PF04205 FMN-binding domain TOL_1400 PF03116 NQR2, RnfD, RnfE family TOL_1401 PF10531 SLBB domain TOL_1401 PF13375 RnfC Barrel sandwich hybrid domain TOL_1401 PF12838 4Fe-4S dicluster domain TOL_1401 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TOL_1402 PF04060 Putative Fe-S cluster TOL_1406 PF00528 Binding-protein-dependent transport system inner membrane component TOL_1407 PF00528 Binding-protein-dependent transport system inner membrane component TOL_1407 PF12911 N-terminal TM domain of oligopeptide transport permease C TOL_1408 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TOL_1408 PF00005 ABC transporter TOL_1419 PF00849 RNA pseudouridylate synthase TOL_1419 PF01479 S4 domain TOL_1420 PF05199 GMC oxidoreductase TOL_1420 PF00732 GMC oxidoreductase TOL_1421 PF00171 Aldehyde dehydrogenase family TOL_1427 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TOL_1427 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TOL_1428 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TOL_1433 PF01464 Transglycosylase SLT domain TOL_1433 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain TOL_1436 PF03352 Methyladenine glycosylase TOL_1448 PF13806 Rieske-like [2Fe-2S] domain TOL_1454 PF00005 ABC transporter TOL_1455 PF00528 Binding-protein-dependent transport system inner membrane component TOL_1472 PF13361 UvrD-like helicase C-terminal domain TOL_1472 PF00580 UvrD/REP helicase N-terminal domain TOL_1472 PF12705 PD-(D/E)XK nuclease superfamily TOL_1473 PF13538 UvrD-like helicase C-terminal domain TOL_1478 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase TOL_1491 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TOL_1492 PF02910 Fumarate reductase flavoprotein C-term TOL_1492 PF00890 FAD binding domain TOL_1495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TOL_1495 PF00364 Biotin-requiring enzyme TOL_1495 PF02817 e3 binding domain TOL_1497 PF08442 ATP-grasp domain TOL_1497 PF00549 CoA-ligase TOL_1509 PF13333 Integrase core domain TOL_1509 PF00665 Integrase core domain TOL_1509 PF13276 HTH-like domain TOL_1521 PF00171 Aldehyde dehydrogenase family TOL_1522 PF00557 Metallopeptidase family M24 TOL_1522 PF01321 Creatinase/Prolidase N-terminal domain TOL_1523 PF00202 Aminotransferase class-III TOL_1525 PF01515 Phosphate acetyl/butaryl transferase TOL_1526 PF00582 Universal stress protein family TOL_1529 PF00694 Aconitase C-terminal domain TOL_1537 PF00291 Pyridoxal-phosphate dependent enzyme TOL_1539 PF08245 Mur ligase middle domain TOL_1539 PF02875 Mur ligase family, glutamate ligase domain TOL_1542 PF00156 Phosphoribosyl transferase domain TOL_1551 PF00248 Aldo/keto reductase family TOL_1563 PF07722 Peptidase C26 TOL_1567 PF00271 Helicase conserved C-terminal domain TOL_1567 PF00270 DEAD/DEAH box helicase TOL_1573 PF01367 5'-3' exonuclease, C-terminal SAM fold TOL_1573 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TOL_1586 PF02575 YbaB/EbfC DNA-binding family TOL_1587 PF02132 RecR protein TOL_1587 PF13662 Toprim domain TOL_1588 PF01612 3'-5' exonuclease TOL_1588 PF00570 HRDC domain TOL_1589 PF05166 YcgL domain TOL_1590 PF03692 Putative zinc- or iron-chelating domain TOL_1612 PF05114 Protein of unknown function (DUF692) TOL_1636 PF00285 Citrate synthase, C-terminal domain TOL_1642 PF13419 Haloacid dehalogenase-like hydrolase TOL_1643 PF01343 Peptidase family S49 TOL_1645 PF01783 Ribosomal L32p protein family TOL_1646 PF02504 Fatty acid synthesis protein TOL_1651 PF02618 YceG-like family TOL_1652 PF02223 Thymidylate kinase TOL_1653 PF09115 DNA polymerase III, delta subunit, C terminal TOL_1657 PF12796 Ankyrin repeats (3 copies) TOL_1664 PF01618 MotA/TolQ/ExbB proton channel family TOL_1665 PF01618 MotA/TolQ/ExbB proton channel family TOL_1666 PF02472 Biopolymer transport protein ExbD/TolR TOL_1677 PF00106 short chain dehydrogenase TOL_1684 PF01526 Tn3 transposase DDE domain TOL_1684 PF13700 Domain of unknown function (DUF4158) TOL_1685 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TOL_1703 PF00529 HlyD membrane-fusion protein of T1SS TOL_1703 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TOL_1709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_1709 PF00672 HAMP domain TOL_1709 PF00512 His Kinase A (phospho-acceptor) domain TOL_1712 PF05275 Copper resistance protein B precursor (CopB) TOL_1722 PF00403 Heavy-metal-associated domain TOL_1729 PF11897 Protein of unknown function (DUF3417) TOL_1729 PF00343 Carbohydrate phosphorylase TOL_1735 PF01545 Cation efflux family TOL_1741 PF03960 ArsC family TOL_1743 PF03358 NADPH-dependent FMN reductase TOL_1751 PF03976 Polyphosphate kinase 2 (PPK2) TOL_1757 PF03934 Type II secretion system (T2SS), protein K TOL_1759 PF02501 Type II secretion system (T2SS), protein I TOL_1759 PF07963 Prokaryotic N-terminal methylation motif TOL_1760 PF07963 Prokaryotic N-terminal methylation motif TOL_1760 PF12019 Type II transport protein GspH TOL_1761 PF08334 Type II secretion system (T2SS), protein G TOL_1761 PF07963 Prokaryotic N-terminal methylation motif TOL_1762 PF00482 Type II secretion system (T2SS), protein F TOL_1763 PF00437 Type II/IV secretion system protein TOL_1774 PF01066 CDP-alcohol phosphatidyltransferase TOL_1775 PF01541 GIY-YIG catalytic domain TOL_1775 PF08459 UvrC Helix-hairpin-helix N-terminal TOL_1775 PF02151 UvrB/uvrC motif TOL_1776 PF00072 Response regulator receiver domain TOL_1776 PF00196 Bacterial regulatory proteins, luxR family TOL_1781 PF02635 DsrE/DsrF-like family TOL_1783 PF04358 DsrC like protein TOL_1786 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TOL_1786 PF14824 Sirohaem biosynthesis protein central TOL_1786 PF10414 Sirohaem synthase dimerisation region TOL_1787 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TOL_1787 PF02403 Seryl-tRNA synthetase N-terminal domain TOL_1788 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TOL_1789 PF00004 ATPase family associated with various cellular activities (AAA) TOL_1789 PF16193 AAA C-terminal domain TOL_1789 PF12002 MgsA AAA+ ATPase C terminal TOL_1790 PF03548 Outer membrane lipoprotein carrier protein LolA TOL_1793 PF04377 Arginine-tRNA-protein transferase, C terminus TOL_1793 PF04376 Arginine-tRNA-protein transferase, N terminus TOL_1800 PF00293 NUDIX domain TOL_1802 PF04356 Protein of unknown function (DUF489) TOL_1815 PF05175 Methyltransferase small domain TOL_1823 PF00300 Histidine phosphatase superfamily (branch 1) TOL_1825 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TOL_1825 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TOL_1827 PF00072 Response regulator receiver domain TOL_1831 PF01554 MatE TOL_1832 PF03009 Glycerophosphoryl diester phosphodiesterase family TOL_1836 PF08240 Alcohol dehydrogenase GroES-like domain TOL_1836 PF00107 Zinc-binding dehydrogenase TOL_1843 PF00075 RNase H TOL_1845 PF01464 Transglycosylase SLT domain TOL_1845 PF01476 LysM domain TOL_1850 PF00216 Bacterial DNA-binding protein TOL_1875 PF01451 Low molecular weight phosphotyrosine protein phosphatase TOL_1876 PF03966 Trm112p-like protein TOL_1877 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TOL_1878 PF00005 ABC transporter TOL_1878 PF00664 ABC transporter transmembrane region TOL_1900 PF13673 Acetyltransferase (GNAT) domain TOL_1903 PF01370 NAD dependent epimerase/dehydratase family TOL_1927 PF05275 Copper resistance protein B precursor (CopB) TOL_1929 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_1929 PF00512 His Kinase A (phospho-acceptor) domain TOL_1932 PF13276 HTH-like domain TOL_1932 PF00665 Integrase core domain TOL_1932 PF13333 Integrase core domain TOL_1939 PF01061 ABC-2 type transporter TOL_1948 PF01047 MarR family TOL_1953 PF11890 Domain of unknown function (DUF3410) TOL_1953 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TOL_1953 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TOL_1954 PF00384 Molybdopterin oxidoreductase TOL_1954 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TOL_1954 PF01568 Molydopterin dinucleotide binding domain TOL_1967 PF07690 Major Facilitator Superfamily TOL_1987 PF00563 EAL domain TOL_1987 PF03707 Bacterial signalling protein N terminal repeat TOL_1987 PF00990 Diguanylate cyclase, GGDEF domain TOL_2005 PF00403 Heavy-metal-associated domain TOL_2006 PF03597 Cytochrome oxidase maturation protein cbb3-type TOL_2014 PF01556 DnaJ C terminal domain TOL_2014 PF00226 DnaJ domain TOL_2014 PF00684 DnaJ central domain TOL_2019 PF01852 START domain TOL_2027 PF00916 Sulfate permease family TOL_2027 PF01740 STAS domain TOL_2032 PF01227 GTP cyclohydrolase I TOL_2033 PF13396 Phospholipase_D-nuclease N-terminal TOL_2033 PF13091 PLD-like domain TOL_2048 PF02810 SEC-C motif TOL_2053 PF01758 Sodium Bile acid symporter family TOL_2072 PF02508 Rnf-Nqr subunit, membrane protein TOL_2073 PF02508 Rnf-Nqr subunit, membrane protein TOL_2074 PF04205 FMN-binding domain TOL_2075 PF03116 NQR2, RnfD, RnfE family TOL_2083 PF00933 Glycosyl hydrolase family 3 N terminal domain TOL_2084 PF03734 L,D-transpeptidase catalytic domain TOL_2084 PF17969 L,D-transpeptidase C-terminal domain TOL_2093 PF05690 Thiazole biosynthesis protein ThiG TOL_2095 PF01266 FAD dependent oxidoreductase TOL_2100 PF00072 Response regulator receiver domain TOL_2112 PF01081 KDPG and KHG aldolase TOL_2113 PF00920 Dehydratase family TOL_2114 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TOL_2130 PF00701 Dihydrodipicolinate synthetase family TOL_2131 PF01594 AI-2E family transporter TOL_2133 PF01435 Peptidase family M48 TOL_2133 PF13181 Tetratricopeptide repeat TOL_2138 PF00691 OmpA family TOL_2139 PF04052 TolB amino-terminal domain TOL_2139 PF07676 WD40-like Beta Propeller Repeat TOL_2141 PF02472 Biopolymer transport protein ExbD/TolR TOL_2142 PF01618 MotA/TolQ/ExbB proton channel family TOL_2143 PF03061 Thioesterase superfamily TOL_2144 PF05496 Holliday junction DNA helicase RuvB P-loop domain TOL_2144 PF17864 RuvB AAA lid domain TOL_2144 PF05491 RuvB C-terminal winged helix domain TOL_2156 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TOL_2156 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TOL_2156 PF02770 Acyl-CoA dehydrogenase, middle domain TOL_2160 PF02222 ATP-grasp domain TOL_2160 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TOL_2166 PF02687 FtsX-like permease family TOL_2166 PF12704 MacB-like periplasmic core domain TOL_2166 PF00005 ABC transporter TOL_2167 PF02687 FtsX-like permease family TOL_2167 PF00005 ABC transporter TOL_2167 PF12704 MacB-like periplasmic core domain TOL_2168 PF12704 MacB-like periplasmic core domain TOL_2168 PF00005 ABC transporter TOL_2168 PF02687 FtsX-like permease family TOL_2172 PF00892 EamA-like transporter family TOL_2174 PF03747 ADP-ribosylglycohydrolase TOL_2183 PF00216 Bacterial DNA-binding protein TOL_2184 PF01588 Putative tRNA binding domain TOL_2184 PF03147 Ferredoxin-fold anticodon binding domain TOL_2184 PF03484 tRNA synthetase B5 domain TOL_2184 PF03483 B3/4 domain TOL_2184 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TOL_2187 PF01632 Ribosomal protein L35 TOL_2193 PF13580 SIS domain TOL_2194 PF08532 Beta-galactosidase trimerisation domain TOL_2194 PF08533 Beta-galactosidase C-terminal domain TOL_2194 PF02449 Beta-galactosidase TOL_2195 PF00483 Nucleotidyl transferase TOL_2203 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_2203 PF06426 Serine acetyltransferase, N-terminal TOL_2210 PF00550 Phosphopantetheine attachment site TOL_2211 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_2217 PF00528 Binding-protein-dependent transport system inner membrane component TOL_2218 PF00005 ABC transporter TOL_2232 PF01867 CRISPR associated protein Cas1 TOL_2236 PF09704 CRISPR-associated protein (Cas_Cas5) TOL_2252 PF12833 Helix-turn-helix domain TOL_2252 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term TOL_2258 PF00308 Bacterial dnaA protein TOL_2261 PF00551 Formyl transferase TOL_2263 PF00692 dUTPase TOL_2264 PF16363 GDP-mannose 4,6 dehydratase TOL_2266 PF02719 Polysaccharide biosynthesis protein TOL_2267 PF02397 Bacterial sugar transferase TOL_2268 PF01370 NAD dependent epimerase/dehydratase family TOL_2269 PF13333 Integrase core domain TOL_2269 PF00665 Integrase core domain TOL_2269 PF13276 HTH-like domain TOL_2270 PF13007 Transposase C of IS166 homeodomain TOL_2270 PF13817 IS66 C-terminal element TOL_2270 PF03050 Transposase IS66 family TOL_2270 PF13005 zinc-finger binding domain of transposase IS66 TOL_2273 PF00534 Glycosyl transferases group 1 TOL_2273 PF13477 Glycosyl transferase 4-like TOL_2277 PF00005 ABC transporter TOL_2279 PF00534 Glycosyl transferases group 1 TOL_2285 PF02224 Cytidylate kinase TOL_2286 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TOL_2287 PF00155 Aminotransferase class I and II TOL_2288 PF01842 ACT domain TOL_2288 PF00800 Prephenate dehydratase TOL_2288 PF01817 Chorismate mutase type II TOL_2289 PF00266 Aminotransferase class-V TOL_2294 PF13419 Haloacid dehalogenase-like hydrolase TOL_2298 PF04079 Segregation and condensation complex subunit ScpB TOL_2299 PF02616 Segregation and condensation protein ScpA TOL_2300 PF00579 tRNA synthetases class I (W and Y) TOL_2301 PF00579 tRNA synthetases class I (W and Y) TOL_2302 PF01300 Telomere recombination TOL_2305 PF03795 YCII-related domain TOL_2318 PF05175 Methyltransferase small domain TOL_2319 PF01734 Patatin-like phospholipase TOL_2325 PF03631 Virulence factor BrkB TOL_2327 PF03358 NADPH-dependent FMN reductase TOL_2329 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ TOL_2335 PF00012 Hsp70 protein TOL_2349 PF01458 Uncharacterized protein family (UPF0051) TOL_2350 PF00266 Aminotransferase class-V TOL_2351 PF01521 Iron-sulphur cluster biosynthesis TOL_2352 PF01883 Iron-sulfur cluster assembly protein TOL_2359 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle TOL_2359 PF14602 Hexapeptide repeat of succinyl-transferase TOL_2408 PF00892 EamA-like transporter family TOL_2410 PF01402 Ribbon-helix-helix protein, copG family TOL_2410 PF08753 NikR C terminal nickel binding domain TOL_2411 PF00120 Glutamine synthetase, catalytic domain TOL_2412 PF02633 Creatinine amidohydrolase TOL_2413 PF00005 ABC transporter TOL_2432 PF01351 Ribonuclease HII TOL_2433 PF02684 Lipid-A-disaccharide synthetase TOL_2434 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TOL_2434 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_2435 PF07977 FabA-like domain TOL_2436 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_2436 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TOL_2438 PF07244 Surface antigen variable number repeat TOL_2438 PF01103 Surface antigen TOL_2439 PF13180 PDZ domain TOL_2439 PF17820 PDZ domain TOL_2439 PF02163 Peptidase family M50 TOL_2440 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TOL_2440 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TOL_2440 PF13288 DXP reductoisomerase C-terminal domain TOL_2442 PF01255 Putative undecaprenyl diphosphate synthase TOL_2443 PF01765 Ribosome recycling factor TOL_2444 PF00696 Amino acid kinase family TOL_2448 PF01909 Nucleotidyltransferase domain TOL_2448 PF01966 HD domain TOL_2448 PF01842 ACT domain TOL_2448 PF08335 GlnD PII-uridylyltransferase TOL_2464 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TOL_2464 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TOL_2468 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TOL_2468 PF03466 LysR substrate binding domain TOL_2473 PF00111 2Fe-2S iron-sulfur cluster binding domain TOL_2474 PF00578 AhpC/TSA family TOL_2485 PF01339 CheB methylesterase TOL_2485 PF00072 Response regulator receiver domain TOL_2486 PF01627 Hpt domain TOL_2486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_2486 PF02895 Signal transducing histidine kinase, homodimeric domain TOL_2486 PF07194 P2 response regulator binding domain TOL_2486 PF01584 CheW-like domain TOL_2487 PF04344 Chemotaxis phosphatase, CheZ TOL_2489 PF04539 Sigma-70 region 3 TOL_2489 PF04545 Sigma-70, region 4 TOL_2489 PF04542 Sigma-70 region 2 TOL_2490 PF10609 NUBPL iron-transfer P-loop NTPase TOL_2491 PF00448 SRP54-type protein, GTPase domain TOL_2494 PF01311 Bacterial export proteins, family 1 TOL_2495 PF01313 Bacterial export proteins, family 3 TOL_2496 PF00813 FliP family TOL_2497 PF04347 Flagellar biosynthesis protein, FliO TOL_2498 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TOL_2499 PF02154 Flagellar motor switch protein FliM TOL_2499 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TOL_2503 PF00072 Response regulator receiver domain TOL_2504 PF13466 STAS domain TOL_2505 PF01339 CheB methylesterase TOL_2505 PF00072 Response regulator receiver domain TOL_2506 PF03975 CheD chemotactic sensory transduction TOL_2507 PF01739 CheR methyltransferase, SAM binding domain TOL_2507 PF03705 CheR methyltransferase, all-alpha domain TOL_2508 PF02203 Tar ligand binding domain homologue TOL_2508 PF00672 HAMP domain TOL_2508 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TOL_2509 PF01584 CheW-like domain TOL_2510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_2510 PF01584 CheW-like domain TOL_2510 PF01627 Hpt domain TOL_2510 PF09078 CheY binding TOL_2510 PF02895 Signal transducing histidine kinase, homodimeric domain TOL_2511 PF00072 Response regulator receiver domain TOL_2514 PF18269 T3SS EscN ATPase C-terminal domain TOL_2514 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOL_2516 PF14842 FliG N-terminal domain TOL_2516 PF14841 FliG middle domain TOL_2516 PF01706 FliG C-terminal domain TOL_2517 PF08345 Flagellar M-ring protein C-terminal TOL_2517 PF01514 Secretory protein of YscJ/FliF family TOL_2519 PF00072 Response regulator receiver domain TOL_2519 PF02954 Bacterial regulatory protein, Fis family TOL_2519 PF00158 Sigma-54 interaction domain TOL_2527 PF04324 BFD-like [2Fe-2S] binding domain TOL_2532 PF13614 AAA domain TOL_2533 PF02563 Polysaccharide biosynthesis/export protein TOL_2538 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TOL_2538 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TOL_2538 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TOL_2539 PF04321 RmlD substrate binding domain TOL_2541 PF00483 Nucleotidyl transferase TOL_2551 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TOL_2551 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TOL_2551 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TOL_2551 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TOL_2563 PF01380 SIS domain TOL_2563 PF00571 CBS domain TOL_2565 PF01370 NAD dependent epimerase/dehydratase family TOL_2566 PF16363 GDP-mannose 4,6 dehydratase TOL_2567 PF00534 Glycosyl transferases group 1 TOL_2567 PF13579 Glycosyl transferase 4-like domain TOL_2568 PF00132 Bacterial transferase hexapeptide (six repeats) TOL_2579 PF00149 Calcineurin-like phosphoesterase TOL_2580 PF00669 Bacterial flagellin N-terminal helical region TOL_2582 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TOL_2582 PF10135 Rod binding protein TOL_2587 PF02107 Flagellar L-ring protein TOL_2588 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOL_2588 PF00460 Flagella basal body rod protein TOL_2589 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOL_2589 PF00460 Flagella basal body rod protein TOL_2591 PF00460 Flagella basal body rod protein TOL_2591 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOL_2591 PF07559 Flagellar basal body protein FlaE TOL_2592 PF13861 FlgD Tudor-like domain TOL_2592 PF13860 FlgD Ig-like domain TOL_2592 PF03963 Flagellar hook capping protein - N-terminal region TOL_2593 PF00460 Flagella basal body rod protein TOL_2593 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TOL_2595 PF03705 CheR methyltransferase, all-alpha domain TOL_2595 PF01739 CheR methyltransferase, SAM binding domain TOL_2597 PF13144 Chaperone for flagella basal body P-ring formation TOL_2604 PF12146 Serine aminopeptidase, S33 TOL_2611 PF01906 Putative heavy-metal-binding TOL_2618 PF13638 PIN domain TOL_2618 PF02562 PhoH-like protein TOL_2620 PF02254 TrkA-N domain TOL_2620 PF00999 Sodium/hydrogen exchanger family TOL_2623 PF00849 RNA pseudouridylate synthase TOL_2626 PF01746 tRNA (Guanine-1)-methyltransferase TOL_2627 PF05239 PRC-barrel domain TOL_2627 PF01782 RimM N-terminal domain TOL_2628 PF00886 Ribosomal protein S16 TOL_2636 PF13005 zinc-finger binding domain of transposase IS66 TOL_2636 PF13007 Transposase C of IS166 homeodomain TOL_2636 PF13817 IS66 C-terminal element TOL_2636 PF03050 Transposase IS66 family TOL_2648 PF02525 Flavodoxin-like fold TOL_2663 PF05985 Ethanolamine ammonia-lyase light chain (EutC) TOL_2667 PF00043 Glutathione S-transferase, C-terminal domain TOL_2667 PF02798 Glutathione S-transferase, N-terminal domain TOL_2675 PF00005 ABC transporter TOL_2675 PF12399 Branched-chain amino acid ATP-binding cassette transporter TOL_2676 PF00005 ABC transporter TOL_2677 PF00795 Carbon-nitrogen hydrolase TOL_2678 PF07724 AAA domain (Cdc48 subfamily) TOL_2678 PF10431 C-terminal, D2-small domain, of ClpB protein TOL_2679 PF03069 Acetamidase/Formamidase family TOL_2685 PF02540 NAD synthase TOL_2685 PF00958 GMP synthase C terminal domain TOL_2685 PF00117 Glutamine amidotransferase class-I TOL_2690 PF00364 Biotin-requiring enzyme TOL_2690 PF02436 Conserved carboxylase domain TOL_2690 PF00682 HMGL-like TOL_2694 PF13649 Methyltransferase domain TOL_2696 PF02646 RmuC family TOL_2697 PF13419 Haloacid dehalogenase-like hydrolase TOL_2698 PF00834 Ribulose-phosphate 3 epimerase family TOL_2706 PF02567 Phenazine biosynthesis-like protein TOL_2714 PF01509 TruB family pseudouridylate synthase (N terminal domain) TOL_2714 PF16198 tRNA pseudouridylate synthase B C-terminal domain TOL_2714 PF09157 Pseudouridine synthase II TruB, C-terminal TOL_2715 PF02033 Ribosome-binding factor A TOL_2717 PF00575 S1 RNA binding domain TOL_2717 PF08529 NusA N-terminal domain TOL_2717 PF13184 NusA-like KH domain TOL_2720 PF03840 Preprotein translocase SecG subunit TOL_2722 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TOL_2722 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TOL_2722 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TOL_2722 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TOL_2732 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TOL_2732 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TOL_2732 PF02142 MGS-like domain TOL_2733 PF00117 Glutamine amidotransferase class-I TOL_2733 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TOL_2745 PF03364 Polyketide cyclase / dehydrase and lipid transport TOL_2760 PF01618 MotA/TolQ/ExbB proton channel family TOL_2761 PF02472 Biopolymer transport protein ExbD/TolR TOL_2765 PF01070 FMN-dependent dehydrogenase TOL_2766 PF18331 PKHD-type hydroxylase C-terminal domain TOL_2766 PF13640 2OG-Fe(II) oxygenase superfamily TOL_2771 PF03061 Thioesterase superfamily TOL_2772 PF00465 Iron-containing alcohol dehydrogenase TOL_2776 PF04244 Deoxyribodipyrimidine photo-lyase-related protein TOL_2778 PF00875 DNA photolyase TOL_2778 PF03441 FAD binding domain of DNA photolyase TOL_2780 PF00528 Binding-protein-dependent transport system inner membrane component TOL_2801 PF03050 Transposase IS66 family TOL_2801 PF13817 IS66 C-terminal element TOL_2801 PF13007 Transposase C of IS166 homeodomain TOL_2801 PF13005 zinc-finger binding domain of transposase IS66 TOL_2803 PF08338 Domain of unknown function (DUF1731) TOL_2803 PF01370 NAD dependent epimerase/dehydratase family TOL_2808 PF13411 MerR HTH family regulatory protein TOL_2809 PF00875 DNA photolyase TOL_2809 PF03441 FAD binding domain of DNA photolyase TOL_2812 PF00106 short chain dehydrogenase TOL_2824 PF02811 PHP domain TOL_2824 PF01336 OB-fold nucleic acid binding domain TOL_2824 PF14579 Helix-hairpin-helix motif TOL_2824 PF07733 Bacterial DNA polymerase III alpha NTPase domain TOL_2824 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TOL_2826 PF07690 Major Facilitator Superfamily TOL_2829 PF02558 Ketopantoate reductase PanE/ApbA TOL_2829 PF08546 Ketopantoate reductase PanE/ApbA C terminal TOL_2830 PF00512 His Kinase A (phospho-acceptor) domain TOL_2830 PF13426 PAS domain TOL_2830 PF13188 PAS domain TOL_2830 PF00989 PAS fold TOL_2830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_2846 PF00034 Cytochrome c TOL_2853 PF01207 Dihydrouridine synthase (Dus) TOL_2855 PF02142 MGS-like domain TOL_2855 PF01808 AICARFT/IMPCHase bienzyme TOL_2856 PF02844 Phosphoribosylglycinamide synthetase, N domain TOL_2856 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TOL_2856 PF02843 Phosphoribosylglycinamide synthetase, C domain TOL_2857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_2857 PF00072 Response regulator receiver domain TOL_2857 PF01627 Hpt domain TOL_2857 PF00512 His Kinase A (phospho-acceptor) domain TOL_2867 PF00512 His Kinase A (phospho-acceptor) domain TOL_2867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_2877 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TOL_2878 PF01252 Signal peptidase (SPase) II TOL_2879 PF06827 Zinc finger found in FPG and IleRS TOL_2879 PF00133 tRNA synthetases class I (I, L, M and V) TOL_2879 PF08264 Anticodon-binding domain of tRNA TOL_2881 PF03023 Lipid II flippase MurJ TOL_2884 PF01472 PUA domain TOL_2884 PF00696 Amino acid kinase family TOL_2885 PF01926 50S ribosome-binding GTPase TOL_2885 PF01018 GTP1/OBG TOL_2889 PF02683 Cytochrome C biogenesis protein transmembrane region TOL_2889 PF11412 Disulphide bond corrector protein DsbC TOL_2894 PF03099 Biotin/lipoate A/B protein ligase family TOL_2903 PF09335 SNARE associated Golgi protein TOL_2908 PF01467 Cytidylyltransferase-like TOL_2910 PF02590 Predicted SPOUT methyltransferase TOL_2911 PF00905 Penicillin binding protein transpeptidase domain TOL_2911 PF03717 Penicillin-binding Protein dimerisation domain TOL_2912 PF01098 Cell cycle protein TOL_2913 PF13406 Transglycosylase SLT domain TOL_2914 PF03330 Lytic transglycolase TOL_2914 PF05036 Sporulation related domain TOL_2917 PF13439 Glycosyltransferase Family 4 TOL_2917 PF00534 Glycosyl transferases group 1 TOL_2930 PF00258 Flavodoxin TOL_2935 PF01569 PAP2 superfamily TOL_2938 PF03775 Septum formation inhibitor MinC, C-terminal domain TOL_2938 PF05209 Septum formation inhibitor MinC, N-terminal domain TOL_2939 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TOL_2940 PF03776 Septum formation topological specificity factor MinE TOL_2960 PF00263 Bacterial type II and III secretion system protein TOL_2960 PF03958 Bacterial type II/III secretion system short domain TOL_2977 PF00581 Rhodanese-like domain TOL_2979 PF01551 Peptidase family M23 TOL_2981 PF04748 Divergent polysaccharide deacetylase TOL_2985 PF01544 CorA-like Mg2+ transporter protein TOL_2989 PF00005 ABC transporter TOL_2994 PF03749 Sugar fermentation stimulation protein RE domain TOL_2994 PF17746 SfsA N-terminal OB domain TOL_2997 PF00749 tRNA synthetases class I (E and Q), catalytic domain TOL_2999 PF08447 PAS fold TOL_2999 PF00989 PAS fold TOL_2999 PF00512 His Kinase A (phospho-acceptor) domain TOL_2999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3002 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TOL_3003 PF02548 Ketopantoate hydroxymethyltransferase TOL_3004 PF02569 Pantoate-beta-alanine ligase TOL_3008 PF00596 Class II Aldolase and Adducin N-terminal domain TOL_3009 PF03079 ARD/ARD' family TOL_3010 PF13419 Haloacid dehalogenase-like hydrolase TOL_3017 PF00583 Acetyltransferase (GNAT) family TOL_3017 PF00795 Carbon-nitrogen hydrolase TOL_3020 PF13393 Histidyl-tRNA synthetase TOL_3027 PF01119 DNA mismatch repair protein, C-terminal domain TOL_3027 PF08676 MutL C terminal dimerisation domain TOL_3028 PF11741 AMIN domain TOL_3028 PF01520 N-acetylmuramoyl-L-alanine amidase TOL_3029 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TOL_3031 PF08331 Domain of unknown function (DUF1730) TOL_3037 PF00581 Rhodanese-like domain TOL_3038 PF02666 Phosphatidylserine decarboxylase TOL_3039 PF03466 LysR substrate binding domain TOL_3039 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TOL_3041 PF05199 GMC oxidoreductase TOL_3041 PF00732 GMC oxidoreductase TOL_3043 PF00152 tRNA synthetases class II (D, K and N) TOL_3050 PF00211 Adenylate and Guanylate cyclase catalytic domain TOL_3050 PF00072 Response regulator receiver domain TOL_3061 PF01975 Survival protein SurE TOL_3062 PF01142 tRNA pseudouridine synthase D (TruD) TOL_3063 PF02542 YgbB family TOL_3064 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TOL_3076 PF00113 Enolase, C-terminal TIM barrel domain TOL_3076 PF03952 Enolase, N-terminal domain TOL_3077 PF00117 Glutamine amidotransferase class-I TOL_3077 PF06418 CTP synthase N-terminus TOL_3080 PF05661 Protein of unknown function (DUF808) TOL_3088 PF01634 ATP phosphoribosyltransferase TOL_3089 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TOL_3092 PF02470 MlaD protein TOL_3093 PF02405 Permease MlaE TOL_3096 PF01380 SIS domain TOL_3096 PF00571 CBS domain TOL_3098 PF03968 OstA-like protein TOL_3099 PF12399 Branched-chain amino acid ATP-binding cassette transporter TOL_3099 PF00005 ABC transporter TOL_3101 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TOL_3102 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TOL_3103 PF03668 P-loop ATPase protein family TOL_3104 PF00381 PTS HPr component phosphorylation site TOL_3106 PF04751 Protein of unknown function (DUF615) TOL_3109 PF10150 Ribonuclease E/G family TOL_3109 PF00575 S1 RNA binding domain TOL_3110 PF02545 Maf-like protein TOL_3111 PF04093 rod shape-determining protein MreD TOL_3115 PF01425 Amidase TOL_3121 PF03050 Transposase IS66 family TOL_3121 PF13817 IS66 C-terminal element TOL_3121 PF13005 zinc-finger binding domain of transposase IS66 TOL_3121 PF13007 Transposase C of IS166 homeodomain TOL_3132 PF01557 Fumarylacetoacetate (FAA) hydrolase family TOL_3143 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TOL_3143 PF01872 RibD C-terminal domain TOL_3144 PF00677 Lumazine binding domain TOL_3145 PF00925 GTP cyclohydrolase II TOL_3145 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TOL_3146 PF00885 6,7-dimethyl-8-ribityllumazine synthase TOL_3147 PF01029 NusB family TOL_3152 PF04073 Aminoacyl-tRNA editing domain TOL_3160 PF08032 RNA 2'-O ribose methyltransferase substrate binding TOL_3160 PF00588 SpoU rRNA Methylase family TOL_3166 PF09423 PhoD-like phosphatase TOL_3166 PF16655 PhoD-like phosphatase, N-terminal domain TOL_3181 PF13419 Haloacid dehalogenase-like hydrolase TOL_3197 PF03783 Curli production assembly/transport component CsgG TOL_3199 PF00588 SpoU rRNA Methylase family TOL_3199 PF08032 RNA 2'-O ribose methyltransferase substrate binding TOL_3207 PF00753 Metallo-beta-lactamase superfamily TOL_3211 PF04608 Phosphatidylglycerophosphatase A TOL_3215 PF00497 Bacterial extracellular solute-binding proteins, family 3 TOL_3215 PF00512 His Kinase A (phospho-acceptor) domain TOL_3215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3217 PF00348 Polyprenyl synthetase TOL_3219 PF01618 MotA/TolQ/ExbB proton channel family TOL_3220 PF00691 OmpA family TOL_3220 PF13677 Membrane MotB of proton-channel complex MotA/MotB TOL_3222 PF04452 RNA methyltransferase TOL_3226 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TOL_3228 PF00361 Proton-conducting membrane transporter TOL_3229 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TOL_3236 PF01761 3-dehydroquinate synthase TOL_3237 PF01202 Shikimate kinase TOL_3247 PF00005 ABC transporter TOL_3248 PF01230 HIT domain TOL_3249 PF00990 Diguanylate cyclase, GGDEF domain TOL_3249 PF00072 Response regulator receiver domain TOL_3263 PF02657 Fe-S metabolism associated domain TOL_3278 PF01979 Amidohydrolase family TOL_3279 PF04115 Ureidoglycolate lyase TOL_3280 PF00576 HIUase/Transthyretin family TOL_3282 PF03561 Allantoicase repeat TOL_3284 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TOL_3284 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TOL_3289 PF01156 Inosine-uridine preferring nucleoside hydrolase TOL_3293 PF01618 MotA/TolQ/ExbB proton channel family TOL_3294 PF01618 MotA/TolQ/ExbB proton channel family TOL_3295 PF02472 Biopolymer transport protein ExbD/TolR TOL_3308 PF04237 YjbR TOL_3320 PF13276 HTH-like domain TOL_3320 PF00665 Integrase core domain TOL_3320 PF13333 Integrase core domain TOL_3323 PF13007 Transposase C of IS166 homeodomain TOL_3323 PF13817 IS66 C-terminal element TOL_3323 PF03050 Transposase IS66 family TOL_3323 PF13005 zinc-finger binding domain of transposase IS66 TOL_3344 PF01084 Ribosomal protein S18 TOL_3349 PF00258 Flavodoxin TOL_3351 PF09297 NADH pyrophosphatase zinc ribbon domain TOL_3351 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TOL_3351 PF00293 NUDIX domain TOL_3354 PF03280 Proteobacterial lipase chaperone protein TOL_3359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3359 PF00672 HAMP domain TOL_3359 PF16527 Two-component sensor protein CpxA, periplasmic domain TOL_3359 PF00512 His Kinase A (phospho-acceptor) domain TOL_3375 PF03781 Sulfatase-modifying factor enzyme 1 TOL_3375 PF12867 DinB superfamily TOL_3378 PF00005 ABC transporter TOL_3388 PF03965 Penicillinase repressor TOL_3392 PF00873 AcrB/AcrD/AcrF family TOL_3398 PF04851 Type III restriction enzyme, res subunit TOL_3400 PF01554 MatE TOL_3410 PF00581 Rhodanese-like domain TOL_3412 PF08173 Membrane bound YbgT-like protein TOL_3413 PF02322 Cytochrome bd terminal oxidase subunit II TOL_3414 PF01654 Cytochrome bd terminal oxidase subunit I TOL_3421 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TOL_3425 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TOL_3425 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TOL_3425 PF01000 RNA polymerase Rpb3/RpoA insert domain TOL_3426 PF01479 S4 domain TOL_3426 PF00163 Ribosomal protein S4/S9 N-terminal domain TOL_3427 PF00411 Ribosomal protein S11 TOL_3429 PF00444 Ribosomal protein L36 TOL_3430 PF00344 SecY translocase TOL_3431 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TOL_3432 PF00327 Ribosomal protein L30p/L7e TOL_3433 PF00333 Ribosomal protein S5, N-terminal domain TOL_3433 PF03719 Ribosomal protein S5, C-terminal domain TOL_3434 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TOL_3435 PF00347 Ribosomal protein L6 TOL_3436 PF00410 Ribosomal protein S8 TOL_3437 PF00253 Ribosomal protein S14p/S29e TOL_3438 PF00673 ribosomal L5P family C-terminus TOL_3438 PF00281 Ribosomal protein L5 TOL_3439 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TOL_3440 PF00238 Ribosomal protein L14p/L23e TOL_3441 PF00366 Ribosomal protein S17 TOL_3442 PF00831 Ribosomal L29 protein TOL_3443 PF00252 Ribosomal protein L16p/L10e TOL_3444 PF07650 KH domain TOL_3444 PF00189 Ribosomal protein S3, C-terminal domain TOL_3445 PF00237 Ribosomal protein L22p/L17e TOL_3446 PF00203 Ribosomal protein S19 TOL_3447 PF00181 Ribosomal Proteins L2, RNA binding domain TOL_3447 PF03947 Ribosomal Proteins L2, C-terminal domain TOL_3448 PF00276 Ribosomal protein L23 TOL_3449 PF00573 Ribosomal protein L4/L1 family TOL_3450 PF00297 Ribosomal protein L3 TOL_3453 PF00679 Elongation factor G C-terminus TOL_3453 PF14492 Elongation Factor G, domain II TOL_3453 PF03764 Elongation factor G, domain IV TOL_3453 PF00009 Elongation factor Tu GTP binding domain TOL_3453 PF03144 Elongation factor Tu domain 2 TOL_3457 PF00562 RNA polymerase Rpb2, domain 6 TOL_3457 PF04563 RNA polymerase beta subunit TOL_3457 PF04561 RNA polymerase Rpb2, domain 2 TOL_3457 PF10385 RNA polymerase beta subunit external 1 domain TOL_3457 PF04565 RNA polymerase Rpb2, domain 3 TOL_3457 PF04560 RNA polymerase Rpb2, domain 7 TOL_3459 PF00466 Ribosomal protein L10 TOL_3460 PF00687 Ribosomal protein L1p/L10e family TOL_3461 PF00298 Ribosomal protein L11, RNA binding domain TOL_3461 PF03946 Ribosomal protein L11, N-terminal domain TOL_3462 PF02357 Transcription termination factor nusG TOL_3462 PF00467 KOW motif TOL_3463 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TOL_3472 PF03309 Type III pantothenate kinase TOL_3474 PF00912 Transglycosylase TOL_3474 PF06832 Penicillin-Binding Protein C-terminus Family TOL_3474 PF00905 Penicillin binding protein transpeptidase domain TOL_3477 PF07715 TonB-dependent Receptor Plug Domain TOL_3477 PF00593 TonB dependent receptor TOL_3490 PF03050 Transposase IS66 family TOL_3490 PF13817 IS66 C-terminal element TOL_3490 PF13007 Transposase C of IS166 homeodomain TOL_3490 PF13005 zinc-finger binding domain of transposase IS66 TOL_3493 PF00990 Diguanylate cyclase, GGDEF domain TOL_3493 PF01590 GAF domain TOL_3493 PF00360 Phytochrome region TOL_3493 PF00563 EAL domain TOL_3496 PF11867 Domain of unknown function (DUF3387) TOL_3496 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TOL_3496 PF18766 SWI2/SNF2 ATPase TOL_3499 PF02463 RecF/RecN/SMC N terminal domain TOL_3501 PF01420 Type I restriction modification DNA specificity domain TOL_3513 PF00082 Subtilase family TOL_3520 PF12804 MobA-like NTP transferase domain TOL_3521 PF00994 Probable molybdopterin binding domain TOL_3522 PF01967 MoaC family TOL_3523 PF02597 ThiS family TOL_3529 PF02325 YGGT family TOL_3530 PF02594 Uncharacterised ACR, YggU family COG1872 TOL_3531 PF00561 alpha/beta hydrolase fold TOL_3532 PF00561 alpha/beta hydrolase fold TOL_3532 PF07021 Methionine biosynthesis protein MetW TOL_3534 PF01725 Ham1 family TOL_3536 PF04055 Radical SAM superfamily TOL_3536 PF06969 HemN C-terminal domain TOL_3539 PF13840 ACT domain TOL_3539 PF00696 Amino acid kinase family TOL_3540 PF06339 Ectoine synthase TOL_3541 PF00202 Aminotransferase class-III TOL_3555 PF01553 Acyltransferase TOL_3569 PF00543 Nitrogen regulatory protein P-II TOL_3573 PF12399 Branched-chain amino acid ATP-binding cassette transporter TOL_3573 PF00005 ABC transporter TOL_3575 PF02653 Branched-chain amino acid transport system / permease component TOL_3577 PF07729 FCD domain TOL_3577 PF00392 Bacterial regulatory proteins, gntR family TOL_3581 PF00437 Type II/IV secretion system protein TOL_3584 PF00583 Acetyltransferase (GNAT) family TOL_3584 PF00696 Amino acid kinase family TOL_3588 PF03062 MBOAT, membrane-bound O-acyltransferase family TOL_3595 PF00186 Dihydrofolate reductase TOL_3596 PF00303 Thymidylate synthase TOL_3597 PF01790 Prolipoprotein diacylglyceryl transferase TOL_3602 PF02896 PEP-utilising enzyme, TIM barrel domain TOL_3602 PF00391 PEP-utilising enzyme, mobile domain TOL_3602 PF05524 PEP-utilising enzyme, N-terminal TOL_3602 PF01590 GAF domain TOL_3610 PF00557 Metallopeptidase family M24 TOL_3610 PF05195 Aminopeptidase P, N-terminal domain TOL_3615 PF01812 5-formyltetrahydrofolate cyclo-ligase family TOL_3624 PF00672 HAMP domain TOL_3624 PF00512 His Kinase A (phospho-acceptor) domain TOL_3624 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3625 PF00486 Transcriptional regulatory protein, C terminal TOL_3625 PF00072 Response regulator receiver domain TOL_3626 PF01594 AI-2E family transporter TOL_3629 PF04172 LrgB-like family TOL_3630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3630 PF00512 His Kinase A (phospho-acceptor) domain TOL_3630 PF09308 LuxQ, periplasmic TOL_3630 PF00072 Response regulator receiver domain TOL_3633 PF01479 S4 domain TOL_3634 PF01430 Hsp33 protein TOL_3646 PF00753 Metallo-beta-lactamase superfamily TOL_3646 PF14863 Alkyl sulfatase dimerisation TOL_3646 PF14864 Alkyl sulfatase C-terminal TOL_3647 PF12697 Alpha/beta hydrolase family TOL_3648 PF04304 Protein of unknown function (DUF454) TOL_3662 PF12706 Beta-lactamase superfamily domain TOL_3673 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase TOL_3674 PF02602 Uroporphyrinogen-III synthase HemD TOL_3676 PF00072 Response regulator receiver domain TOL_3676 PF04397 LytTr DNA-binding domain TOL_3677 PF07694 5TMR of 5TMR-LYT TOL_3677 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3677 PF06580 Histidine kinase TOL_3683 PF14403 Circularly permuted ATP-grasp type 2 TOL_3683 PF04168 A predicted alpha-helical domain with a conserved ER motif. TOL_3695 PF02874 ATP synthase alpha/beta family, beta-barrel domain TOL_3695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOL_3696 PF00231 ATP synthase TOL_3697 PF00306 ATP synthase alpha/beta chain, C terminal domain TOL_3697 PF02874 ATP synthase alpha/beta family, beta-barrel domain TOL_3697 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TOL_3698 PF00213 ATP synthase delta (OSCP) subunit TOL_3699 PF00430 ATP synthase B/B' CF(0) TOL_3700 PF00137 ATP synthase subunit C TOL_3704 PF02195 ParB-like nuclease domain TOL_3704 PF17762 HTH domain found in ParB protein TOL_3705 PF13614 AAA domain TOL_3712 PF00486 Transcriptional regulatory protein, C terminal TOL_3712 PF00072 Response regulator receiver domain TOL_3713 PF08918 PhoQ Sensor TOL_3713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOL_3715 PF10070 Uncharacterized protein conserved in bacteria (DUF2309)