R615_00005 PF00712 DNA polymerase III beta subunit, N-terminal domain R615_00005 PF02767 DNA polymerase III beta subunit, central domain R615_00005 PF02768 DNA polymerase III beta subunit, C-terminal domain R615_00010 PF02463 RecF/RecN/SMC N terminal domain R615_00015 PF00204 DNA gyrase B R615_00015 PF00986 DNA gyrase B subunit, carboxyl terminus R615_00015 PF01751 Toprim domain R615_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_00020 PF07693 R615_00020 R615_00040 PF00561 alpha/beta hydrolase fold R615_00050 PF10118 R615_00050 R615_00055 PF00924 Mechanosensitive ion channel R615_00060 PF13396 R615_00060 R615_00065 PF01553 Acyltransferase R615_00070 PF13242 HAD-hyrolase-like R615_00075 PF04828 Glutathione-dependent formaldehyde-activating enzyme R615_00080 PF02092 R615_00080 R615_00080 PF05746 DALR anticodon binding domain R615_00085 PF02091 Glycyl-tRNA synthetase alpha subunit R615_00090 PF01564 Spermine/spermidine synthase R615_00090 PF17284 R615_00090 R615_00100 PF00561 alpha/beta hydrolase fold R615_00105 PF06094 AIG2-like family R615_00115 PF00521 DNA gyrase/topoisomerase IV, subunit A R615_00115 PF03989 DNA gyrase C-terminal domain, beta-propeller R615_00130 PF00204 DNA gyrase B R615_00130 PF00986 DNA gyrase B subunit, carboxyl terminus R615_00130 PF01751 Toprim domain R615_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_00135 PF05728 Uncharacterised protein family (UPF0227) R615_00140 PF00149 Calcineurin-like phosphoesterase R615_00145 PF06853 R615_00145 R615_00150 PF00293 NUDIX domain R615_00155 PF02321 Outer membrane efflux protein R615_00160 PF00534 Glycosyl transferases group 1 R615_00160 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) R615_00165 PF00294 pfkB family carbohydrate kinase R615_00165 PF01467 Cytidylyltransferase R615_00170 PF01370 NAD dependent epimerase/dehydratase family R615_00175 PF03279 R615_00175 R615_00180 PF00155 Aminotransferase class I and II R615_00180 PF00392 Bacterial regulatory proteins, gntR family R615_00185 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase R615_00185 PF12801 R615_00185 R615_00185 PF13746 4Fe-4S dicluster domain R615_00190 PF00069 Protein kinase domain R615_00190 PF13672 Protein phosphatase 2C R615_00195 PF01226 Formate/nitrite transporter R615_00200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_00200 PF02770 Acyl-CoA dehydrogenase, middle domain R615_00200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_00205 PF00106 short chain dehydrogenase R615_00210 PF01636 Phosphotransferase enzyme family R615_00215 PF00300 Histidine phosphatase superfamily (branch 1) R615_00220 PF13561 Enoyl-(Acyl carrier protein) reductase R615_00225 PF03088 Strictosidine synthase R615_00230 PF00082 Subtilase family R615_00235 PF01078 Magnesium chelatase, subunit ChlI R615_00235 PF13335 R615_00235 R615_00235 PF13541 Subunit ChlI of Mg-chelatase R615_00245 PF02661 Fic/DOC family R615_00255 PF00563 EAL domain R615_00260 PF00580 UvrD/REP helicase N-terminal domain R615_00260 PF13361 UvrD-like helicase C-terminal domain R615_00285 PF04542 Sigma-70 region 2 R615_00285 PF08281 Sigma-70, region 4 R615_00290 PF00082 Subtilase family R615_00295 PF04575 R615_00295 R615_00310 PF02254 TrkA-N domain R615_00310 PF07885 Ion channel R615_00315 PF01564 Spermine/spermidine synthase R615_00320 PF03994 R615_00320 R615_00330 PF13785 R615_00330 R615_00335 PF05816 R615_00335 R615_00345 PF01380 SIS domain R615_00345 PF13522 Glutamine amidotransferase domain R615_00350 PF00455 R615_00350 R615_00350 PF08220 DeoR-like helix-turn-helix domain R615_00355 PF00990 GGDEF domain R615_00360 PF03372 Endonuclease/Exonuclease/phosphatase family R615_00365 PF01323 DSBA-like thioredoxin domain R615_00370 PF00034 Cytochrome c R615_00370 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_00375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_00380 PF01926 50S ribosome-binding GTPase R615_00395 PF00732 GMC oxidoreductase R615_00395 PF05199 GMC oxidoreductase R615_00395 PF10518 TAT (twin-arginine translocation) pathway signal sequence R615_00400 PF00476 DNA polymerase family A R615_00400 PF01367 5'-3' exonuclease, C-terminal SAM fold R615_00400 PF01612 3'-5' exonuclease R615_00400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain R615_00405 PF11191 Protein of unknown function (DUF2782) R615_00410 PF01636 Phosphotransferase enzyme family R615_00415 PF10005 R615_00415 R615_00415 PF15887 R615_00415 R615_00425 PF00226 DnaJ domain R615_00430 PF01636 Phosphotransferase enzyme family R615_00435 PF04973 R615_00435 R615_00440 PF07615 YKOF-related Family R615_00445 PF00593 TonB dependent receptor R615_00445 PF07715 TonB-dependent Receptor Plug Domain R615_00450 PF01435 Peptidase family M48 R615_00455 PF00072 Response regulator receiver domain R615_00455 PF00512 His Kinase A (phospho-acceptor) domain R615_00455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_00455 PF03924 CHASE domain R615_00455 PF05231 R615_00455 R615_00460 PF00487 R615_00460 R615_00465 PF02169 LPP20 lipoprotein R615_00470 PF13036 Protein of unknown function (DUF3897) R615_00480 PF12697 Alpha/beta hydrolase family R615_00500 PF09526 R615_00500 R615_00505 PF01432 Peptidase family M3 R615_00510 PF00132 Bacterial transferase hexapeptide (six repeats) R615_00515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily R615_00530 PF08279 HTH domain R615_00530 PF13280 R615_00530 R615_00540 PF00067 Cytochrome P450 R615_00550 PF03942 R615_00550 R615_00555 PF02666 R615_00555 R615_00560 PF01709 Transcriptional regulator R615_00575 PF01488 Shikimate / quinate 5-dehydrogenase R615_00575 PF08501 Shikimate dehydrogenase substrate binding domain R615_00580 PF01218 Coproporphyrinogen III oxidase R615_00590 PF01300 Telomere recombination R615_00595 PF02481 DNA recombination-mediator protein A R615_00600 PF01476 LysM domain R615_00605 PF01327 Polypeptide deformylase R615_00610 PF00551 Formyl transferase R615_00610 PF02911 Formyl transferase, C-terminal domain R615_00615 PF01029 NusB family R615_00615 PF01189 NOL1/NOP2/sun family R615_00620 PF02080 TrkA-C domain R615_00620 PF02254 TrkA-N domain R615_00625 PF02386 Cation transport protein R615_00630 PF00916 R615_00630 R615_00630 PF01740 STAS domain R615_00635 PF00582 Universal stress protein family R615_00640 PF04542 Sigma-70 region 2 R615_00640 PF08281 Sigma-70, region 4 R615_00645 PF13490 Putative zinc-finger R615_00655 PF07681 R615_00655 R615_00660 PF03279 R615_00660 R615_00665 PF00072 Response regulator receiver domain R615_00665 PF13432 Tetratricopeptide repeat R615_00670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_00675 PF03602 Conserved hypothetical protein 95 R615_00685 PF00448 SRP54-type protein, GTPase domain R615_00685 PF02881 SRP54-type protein, helical bundle domain R615_00690 PF00005 ABC transporter R615_00700 PF04542 Sigma-70 region 2 R615_00700 PF04545 Sigma-70, region 4 R615_00705 PF03061 Thioesterase superfamily R615_00710 PF06808 R615_00710 R615_00715 PF04290 R615_00715 R615_00720 PF12849 PBP superfamily domain R615_00725 PF00528 Binding-protein-dependent transport system inner membrane component R615_00725 PF12501 R615_00725 R615_00730 PF00528 Binding-protein-dependent transport system inner membrane component R615_00730 PF11812 R615_00730 R615_00735 PF00005 ABC transporter R615_00740 PF01895 PhoU domain R615_00745 PF13609 Gram-negative porin R615_00750 PF00512 His Kinase A (phospho-acceptor) domain R615_00750 PF00989 PAS fold R615_00750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_00750 PF11808 R615_00750 R615_00755 PF00072 Response regulator receiver domain R615_00755 PF00486 Transcriptional regulatory protein, C terminal R615_00770 PF11872 R615_00770 R615_00780 PF00588 SpoU rRNA Methylase family R615_00780 PF12105 SpoU, rRNA methylase, C-terminal R615_00785 PF07264 Etoposide-induced protein 2 R615_00790 PF00072 Response regulator receiver domain R615_00795 PF00512 His Kinase A (phospho-acceptor) domain R615_00795 PF00989 PAS fold R615_00795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_00795 PF11808 R615_00795 R615_00800 PF00072 Response regulator receiver domain R615_00800 PF00486 Transcriptional regulatory protein, C terminal R615_00805 PF01040 UbiA prenyltransferase family R615_00810 PF00301 Rubredoxin R615_00815 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_00820 PF00216 Bacterial DNA-binding protein R615_00825 PF07209 R615_00825 R615_00830 PF02036 SCP-2 sterol transfer family R615_00835 PF00375 Sodium:dicarboxylate symporter family R615_00845 PF08668 HDOD domain R615_00850 PF00270 DEAD/DEAH box helicase R615_00850 PF00271 Helicase conserved C-terminal domain R615_00850 PF17191 R615_00850 R615_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_00855 PF03466 LysR substrate binding domain R615_00860 PF13460 NADH(P)-binding R615_00870 PF01042 Endoribonuclease L-PSP R615_00875 PF02824 TGS domain R615_00875 PF04607 Region found in RelA / SpoT proteins R615_00875 PF13291 ACT domain R615_00875 PF13328 HD domain R615_00880 PF01192 RNA polymerase Rpb6 R615_00885 PF00625 Guanylate kinase R615_00890 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase R615_00895 PF03755 R615_00895 R615_00895 PF08340 R615_00895 R615_00900 PF01138 3' exoribonuclease family, domain 1 R615_00900 PF03725 3' exoribonuclease family, domain 2 R615_00910 PF00156 Phosphoribosyl transferase domain R615_00920 PF00440 Bacterial regulatory proteins, tetR family R615_00925 PF00696 Amino acid kinase family R615_00930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain R615_00930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I R615_00930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II R615_00930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III R615_00935 PF00692 dUTPase R615_00940 PF02441 Flavoprotein R615_00940 PF04127 DNA / pantothenate metabolism flavoprotein R615_00945 PF04002 RadC-like JAB domain R615_00950 PF00830 Ribosomal L28 family R615_00955 PF00471 Ribosomal protein L33 R615_00960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain R615_00960 PF06827 Zinc finger found in FPG and IleRS R615_00960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain R615_00970 PF02698 DUF218 domain R615_00975 PF01019 Gamma-glutamyltranspeptidase R615_00980 PF12838 4Fe-4S dicluster domain R615_00985 PF01467 Cytidylyltransferase R615_00990 PF00732 GMC oxidoreductase R615_00990 PF05199 GMC oxidoreductase R615_01000 PF00171 Aldehyde dehydrogenase family R615_01005 PF00440 Bacterial regulatory proteins, tetR family R615_01005 PF13972 Bacterial transcriptional repressor R615_01010 PF11279 R615_01010 R615_01015 PF02265 S1/P1 Nuclease R615_01030 PF02080 TrkA-C domain R615_01030 PF03600 Citrate transporter R615_01035 PF01040 UbiA prenyltransferase family R615_01040 PF00902 Sec-independent protein translocase protein (TatC) R615_01045 PF02416 mttA/Hcf106 family R615_01050 PF02416 mttA/Hcf106 family R615_01055 PF01230 HIT domain R615_01060 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase R615_01065 PF01502 Phosphoribosyl-AMP cyclohydrolase R615_01070 PF03109 R615_01070 R615_01075 PF02036 SCP-2 sterol transfer family R615_01080 PF01209 ubiE/COQ5 methyltransferase family R615_01085 PF06611 R615_01085 R615_01090 PF08668 HDOD domain R615_01095 PF00072 Response regulator receiver domain R615_01095 PF00563 EAL domain R615_01095 PF00990 GGDEF domain R615_01095 PF01627 Hpt domain R615_01095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_01100 PF00512 His Kinase A (phospho-acceptor) domain R615_01100 PF00672 HAMP domain R615_01100 PF17152 R615_01100 R615_01105 PF13689 R615_01105 R615_01110 PF00593 TonB dependent receptor R615_01110 PF07715 TonB-dependent Receptor Plug Domain R615_01115 PF00691 OmpA family R615_01115 PF13505 Outer membrane protein beta-barrel domain R615_01120 PF08212 Lipocalin-like domain R615_01125 PF13472 GDSL-like Lipase/Acylhydrolase family R615_01130 PF00005 ABC transporter R615_01140 PF01435 Peptidase family M48 R615_01145 PF04011 LemA family R615_01150 PF07027 R615_01150 R615_01155 PF13617 R615_01155 R615_01160 PF00270 DEAD/DEAH box helicase R615_01160 PF00271 Helicase conserved C-terminal domain R615_01165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_01175 PF13419 Haloacid dehalogenase-like hydrolase R615_01180 PF04340 Protein of unknown function, DUF484 R615_01185 PF01678 Diaminopimelate epimerase R615_01190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain R615_01190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain R615_01195 PF13627 R615_01195 R615_01200 PF01295 R615_01200 R615_01200 PF12633 R615_01200 R615_01205 PF01979 Amidohydrolase family R615_01210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain R615_01210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain R615_01215 PF00156 Phosphoribosyl transferase domain R615_01220 PF03652 Uncharacterised protein family (UPF0081) R615_01225 PF02622 Uncharacterized ACR, COG1678 R615_01230 PF03544 Gram-negative bacterial TonB protein C-terminal R615_01240 PF02951 Prokaryotic glutathione synthetase, N-terminal domain R615_01240 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain R615_01245 PF00072 Response regulator receiver domain R615_01250 PF00072 Response regulator receiver domain R615_01255 PF01584 CheW-like domain R615_01260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_01260 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term R615_01265 PF01739 CheR methyltransferase, SAM binding domain R615_01265 PF03705 CheR methyltransferase, all-alpha domain R615_01270 PF00072 Response regulator receiver domain R615_01270 PF01584 CheW-like domain R615_01270 PF01627 Hpt domain R615_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_01270 PF02895 Signal transducing histidine kinase, homodimeric domain R615_01275 PF01339 CheB methylesterase R615_01280 PF01584 CheW-like domain R615_01300 PF00884 Sulfatase R615_01300 PF08019 R615_01300 R615_01310 PF04932 R615_01310 R615_01315 PF13704 R615_01315 R615_01325 PF05159 R615_01325 R615_01330 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain R615_01330 PF05221 S-adenosyl-L-homocysteine hydrolase R615_01335 PF00438 S-adenosylmethionine synthetase, N-terminal domain R615_01335 PF02772 S-adenosylmethionine synthetase, central domain R615_01335 PF02773 S-adenosylmethionine synthetase, C-terminal domain R615_01340 PF12840 Helix-turn-helix domain R615_01340 PF13489 Methyltransferase domain R615_01345 PF07726 ATPase family associated with various cellular activities (AAA) R615_01350 PF01882 R615_01350 R615_01355 PF01841 Transglutaminase-like superfamily R615_01360 PF13410 Glutathione S-transferase, C-terminal domain R615_01360 PF13417 Glutathione S-transferase, N-terminal domain R615_01365 PF01131 DNA topoisomerase R615_01365 PF01751 Toprim domain R615_01370 PF13230 Glutamine amidotransferases class-II R615_01380 PF01063 Aminotransferase class IV R615_01385 PF03710 Glutamate-ammonia ligase adenylyltransferase R615_01385 PF08335 GlnD PII-uridylyltransferase R615_01390 PF00528 Binding-protein-dependent transport system inner membrane component R615_01395 PF00528 Binding-protein-dependent transport system inner membrane component R615_01400 PF00005 ABC transporter R615_01400 PF08402 TOBE domain R615_01405 PF13416 Bacterial extracellular solute-binding protein R615_01415 PF00905 Penicillin binding protein transpeptidase domain R615_01415 PF00912 Transglycosylase R615_01415 PF14814 Bifunctional transglycosylase second domain R615_01420 PF14559 Tetratricopeptide repeat R615_01425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_01435 PF00202 Aminotransferase class-III R615_01440 PF03653 R615_01440 R615_01445 PF00654 Voltage gated chloride channel R615_01450 PF01118 Semialdehyde dehydrogenase, NAD binding domain R615_01450 PF02774 Semialdehyde dehydrogenase, dimerisation domain R615_01460 PF04519 R615_01460 R615_01465 PF01521 Iron-sulphur cluster biosynthesis R615_01470 PF02635 DsrE/DsrF-like family R615_01475 PF03702 Uncharacterised protein family (UPF0075) R615_01480 PF01551 Peptidase family M23 R615_01485 PF00579 tRNA synthetases class I (W and Y) R615_01525 PF00682 HMGL-like R615_01525 PF08502 LeuA allosteric (dimerisation) domain R615_01535 PF00583 Acetyltransferase (GNAT) family R615_01540 PF01891 Cobalt uptake substrate-specific transmembrane region R615_01545 PF00072 Response regulator receiver domain R615_01545 PF02954 Bacterial regulatory protein, Fis family R615_01555 PF00487 R615_01555 R615_01560 PF00750 tRNA synthetases class I (R) R615_01560 PF03485 Arginyl tRNA synthetase N terminal domain R615_01560 PF05746 DALR anticodon binding domain R615_01565 PF05036 Sporulation related domain R615_01570 PF00270 DEAD/DEAH box helicase R615_01570 PF00271 Helicase conserved C-terminal domain R615_01570 PF16124 R615_01570 R615_01575 PF12697 Alpha/beta hydrolase family R615_01580 PF01244 Membrane dipeptidase (Peptidase family M19) R615_01595 PF04362 Bacterial Fe(2+) trafficking R615_01600 PF00633 Helix-hairpin-helix motif R615_01600 PF00730 HhH-GPD superfamily base excision DNA repair protein R615_01600 PF10576 Iron-sulfur binding domain of endonuclease III R615_01600 PF14815 NUDIX domain R615_01605 PF00563 EAL domain R615_01605 PF00990 GGDEF domain R615_01605 PF08447 PAS fold R615_01605 PF17152 R615_01605 R615_01610 PF05494 Toluene tolerance, Ttg2 R615_01615 PF12568 Acetyltransferase (GNAT) domain R615_01620 PF00475 Imidazoleglycerol-phosphate dehydratase R615_01625 PF00117 Glutamine amidotransferase class-I R615_01630 PF00977 Histidine biosynthesis protein R615_01635 PF00977 Histidine biosynthesis protein R615_01640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_01650 PF00920 Dehydratase family R615_01655 PF04134 R615_01655 R615_01660 PF00753 Metallo-beta-lactamase superfamily R615_01660 PF07521 RNA-metabolising metallo-beta-lactamase R615_01665 PF01957 NfeD-like C-terminal, partner-binding R615_01670 PF01145 SPFH domain / Band 7 family R615_01670 PF16200 R615_01670 R615_01675 PF00069 Protein kinase domain R615_01675 PF03781 Sulfatase-modifying factor enzyme 1 R615_01680 PF00498 FHA domain R615_01685 PF12790 Type VI secretion lipoprotein R615_01690 PF05936 R615_01690 R615_01695 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) R615_01700 PF06744 R615_01700 R615_01700 PF06761 R615_01700 R615_01700 PF14331 R615_01700 R615_01705 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) R615_01710 PF06812 R615_01710 R615_01715 PF05591 R615_01715 R615_01720 PF05943 R615_01720 R615_01725 PF05943 R615_01725 R615_01730 PF04965 Gene 25-like lysozyme R615_01735 PF05947 R615_01735 R615_01740 PF06996 R615_01740 R615_01745 PF00004 ATPase family associated with various cellular activities (AAA) R615_01745 PF02861 Clp amino terminal domain R615_01745 PF07724 AAA domain (Cdc48 subfamily) R615_01745 PF10431 C-terminal, D2-small domain, of ClpB protein R615_01750 PF07581 R615_01750 R615_01770 PF05717 R615_01770 R615_01805 PF05488 PAAR motif R615_01815 PF05954 Phage late control gene D protein (GPD) R615_01820 PF05638 Protein of unknown function (DUF796) R615_01825 PF01797 Transposase IS200 like R615_01830 PF13672 Protein phosphatase 2C R615_01835 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB R615_01835 PF08479 POTRA domain, ShlB-type R615_01840 PF05860 haemagglutination activity domain R615_01845 PF01476 LysM domain R615_01850 PF07581 R615_01850 R615_01860 PF07581 R615_01860 R615_01865 PF06808 R615_01865 R615_01870 PF00009 Elongation factor Tu GTP binding domain R615_01870 PF03144 Elongation factor Tu domain 2 R615_01870 PF16658 R615_01870 R615_01880 PF00572 Ribosomal protein L13 R615_01885 PF00380 Ribosomal protein S9/S16 R615_01890 PF00355 Rieske [2Fe-2S] domain R615_01890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal R615_01895 PF00032 Cytochrome b(C-terminal)/b6/petD R615_01895 PF00033 Cytochrome b(N-terminal)/b6/petB R615_01900 PF02167 Cytochrome C1 family R615_01905 PF00043 Glutathione S-transferase, C-terminal domain R615_01905 PF13417 Glutathione S-transferase, N-terminal domain R615_01910 PF04386 Stringent starvation protein B R615_01915 PF01132 Elongation factor P (EF-P) OB domain R615_01915 PF08207 Elongation factor P (EF-P) KOW-like domain R615_01915 PF09285 Elongation factor P, C-terminal R615_01935 PF11655 R615_01935 R615_01945 PF00384 Molybdopterin oxidoreductase R615_01945 PF01568 Molydopterin dinucleotide binding domain R615_01960 PF13430 R615_01960 R615_01980 PF06769 Plasmid encoded toxin Txe R615_01985 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system R615_02010 PF05717 R615_02010 R615_02025 PF05016 Plasmid stabilisation system protein R615_02030 PF03693 Uncharacterised protein family (UPF0156) R615_02040 PF02637 GatB domain R615_02040 PF02934 GatB/GatE catalytic domain R615_02045 PF01425 Amidase R615_02050 PF02686 Glu-tRNAGln amidotransferase C subunit R615_02055 PF06723 MreB/Mbl protein R615_02060 PF04085 rod shape-determining protein MreC R615_02065 PF04093 R615_02065 R615_02070 PF02545 Maf-like protein R615_02075 PF00575 S1 RNA binding domain R615_02075 PF10150 Ribonuclease E/G family R615_02080 PF13116 R615_02080 R615_02080 PF13502 R615_02080 R615_02085 PF00795 Carbon-nitrogen hydrolase R615_02090 PF04751 Protein of unknown function (DUF615) R615_02095 PF00571 CBS domain R615_02095 PF01769 Divalent cation transporter R615_02095 PF03448 MgtE intracellular N domain R615_02100 PF00381 PTS HPr component phosphorylation site R615_02105 PF03668 R615_02105 R615_02110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 R615_02115 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein R615_02120 PF00309 R615_02120 R615_02120 PF04552 Sigma-54, DNA binding domain R615_02120 PF04963 Sigma-54 factor, core binding domain R615_02125 PF00005 ABC transporter R615_02125 PF12399 Branched-chain amino acid ATP-binding cassette transporter R615_02130 PF03968 OstA-like protein R615_02135 PF06835 Lipopolysaccharide-assembly, LptC-related R615_02140 PF00571 CBS domain R615_02140 PF01380 SIS domain R615_02145 PF01699 Sodium/calcium exchanger protein R615_02150 PF00005 ABC transporter R615_02155 PF02405 R615_02155 R615_02160 PF02470 R615_02160 R615_02165 PF13466 STAS domain R615_02170 PF01722 BolA-like protein R615_02175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) R615_02180 PF01634 ATP phosphoribosyltransferase R615_02185 PF00815 Histidinol dehydrogenase R615_02190 PF00155 Aminotransferase class I and II R615_02195 PF13180 PDZ domain R615_02195 PF13365 Trypsin-like peptidase domain R615_02200 PF01784 NIF3 (NGG1p interacting factor 3) R615_02210 PF05661 R615_02210 R615_02215 PF00892 EamA-like transporter family R615_02225 PF00117 Glutamine amidotransferase class-I R615_02225 PF06418 CTP synthase N-terminus R615_02230 PF00113 Enolase, C-terminal TIM barrel domain R615_02230 PF03952 Enolase, N-terminal domain R615_02255 PF00415 Regulator of chromosome condensation (RCC1) repeat R615_02255 PF13540 Regulator of chromosome condensation (RCC1) repeat R615_02260 PF00211 Adenylate and Guanylate cyclase catalytic domain R615_02260 PF00498 FHA domain R615_02280 PF00990 GGDEF domain R615_02285 PF04977 Septum formation initiator R615_02290 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase R615_02295 PF02542 YgbB family R615_02300 PF01142 tRNA pseudouridine synthase D (TruD) R615_02305 PF01975 Survival protein SurE R615_02310 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) R615_02315 PF04018 R615_02315 R615_02320 PF01476 LysM domain R615_02320 PF01551 Peptidase family M23 R615_02325 PF00140 Sigma-70 factor, region 1 R615_02325 PF04539 Sigma-70 region 3 R615_02325 PF04542 Sigma-70 region 2 R615_02325 PF04545 Sigma-70, region 4 R615_02330 PF00436 Single-strand binding protein family R615_02335 PF07690 Major Facilitator Superfamily R615_02340 PF00196 Bacterial regulatory proteins, luxR family R615_02345 PF00005 ABC transporter R615_02350 PF03942 R615_02350 R615_02365 PF00211 Adenylate and Guanylate cyclase catalytic domain R615_02375 PF12710 haloacid dehalogenase-like hydrolase R615_02375 PF13740 ACT domain R615_02380 PF00563 EAL domain R615_02380 PF00990 GGDEF domain R615_02380 PF13188 PAS domain R615_02390 PF04055 Radical SAM superfamily R615_02390 PF13353 4Fe-4S single cluster domain R615_02395 PF01132 Elongation factor P (EF-P) OB domain R615_02395 PF08207 Elongation factor P (EF-P) KOW-like domain R615_02395 PF09285 Elongation factor P, C-terminal R615_02400 PF00152 tRNA synthetases class II (D, K and N) R615_02405 PF02627 Carboxymuconolactone decarboxylase family R615_02410 PF00732 GMC oxidoreductase R615_02410 PF00890 FAD binding domain R615_02410 PF05199 GMC oxidoreductase R615_02420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_02420 PF03466 LysR substrate binding domain R615_02425 PF02666 R615_02425 R615_02430 PF00581 Rhodanese-like domain R615_02435 PF08668 HDOD domain R615_02440 PF01618 R615_02440 R615_02445 PF00691 OmpA family R615_02445 PF13677 R615_02445 R615_02455 PF03193 Protein of unknown function, DUF258 R615_02460 PF00929 Exonuclease R615_02465 PF08331 R615_02465 R615_02465 PF13484 R615_02465 R615_02470 PF01256 Carbohydrate kinase R615_02470 PF03853 YjeF-related protein N-terminus R615_02475 PF02367 Uncharacterised P-loop hydrolase UPF0079 R615_02480 PF01476 LysM domain R615_02480 PF01520 N-acetylmuramoyl-L-alanine amidase R615_02480 PF11741 AMIN domain R615_02485 PF01119 DNA mismatch repair protein, C-terminal domain R615_02485 PF08676 MutL C terminal dimerisation domain R615_02485 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_02490 PF01715 IPP transferase R615_02495 PF17209 R615_02495 R615_02500 PF01926 50S ribosome-binding GTPase R615_02500 PF13167 R615_02500 R615_02500 PF16360 R615_02500 R615_02505 PF01145 SPFH domain / Band 7 family R615_02505 PF12221 R615_02505 R615_02510 PF01145 SPFH domain / Band 7 family R615_02520 PF13393 Histidyl-tRNA synthetase R615_02525 PF00709 Adenylosuccinate synthetase R615_02530 PF13279 Thioesterase-like superfamily R615_02535 PF00583 Acetyltransferase (GNAT) family R615_02535 PF00795 Carbon-nitrogen hydrolase R615_02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_02540 PF03466 LysR substrate binding domain R615_02545 PF00107 Zinc-binding dehydrogenase R615_02545 PF08240 Alcohol dehydrogenase GroES-like domain R615_02550 PF00756 Putative esterase R615_02560 PF05591 R615_02560 R615_02560 PF05943 R615_02560 R615_02565 PF01841 Transglutaminase-like superfamily R615_02580 PF03079 ARD/ARD' family R615_02585 PF00596 Class II Aldolase and Adducin N-terminal domain R615_02590 PF01008 Initiation factor 2 subunit family R615_02595 PF00342 Phosphoglucose isomerase R615_02600 PF02261 Aspartate decarboxylase R615_02605 PF02569 Pantoate-beta-alanine ligase R615_02610 PF02548 Ketopantoate hydroxymethyltransferase R615_02615 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) R615_02620 PF01743 Poly A polymerase head domain R615_02620 PF12626 Polymerase A arginine-rich C-terminus R615_02620 PF12627 Probable RNA and SrmB- binding site of polymerase A R615_02625 PF00072 Response regulator receiver domain R615_02625 PF00158 Sigma-54 interaction domain R615_02630 PF00512 His Kinase A (phospho-acceptor) domain R615_02630 PF00989 PAS fold R615_02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_02640 PF00749 tRNA synthetases class I (E and Q), catalytic domain R615_02645 PF01258 Prokaryotic dksA/traR C4-type zinc finger R615_02650 PF00155 Aminotransferase class I and II R615_02655 PF03749 Sugar fermentation stimulation protein R615_02660 PF03168 Late embryogenesis abundant protein R615_02670 PF00583 Acetyltransferase (GNAT) family R615_02670 PF00795 Carbon-nitrogen hydrolase R615_02675 PF00355 Rieske [2Fe-2S] domain R615_02680 PF01032 FecCD transport family R615_02685 PF00005 ABC transporter R615_02690 PF00027 Cyclic nucleotide-binding domain R615_02695 PF00805 Pentapeptide repeats (8 copies) R615_02700 PF00136 DNA polymerase family B R615_02700 PF03104 DNA polymerase family B, exonuclease domain R615_02705 PF01544 CorA-like Mg2+ transporter protein R615_02710 PF03062 R615_02710 R615_02725 PF04748 Divergent polysaccharide deacetylase R615_02730 PF03572 Peptidase family S41 R615_02730 PF13180 PDZ domain R615_02735 PF01551 Peptidase family M23 R615_02740 PF01676 Metalloenzyme superfamily R615_02740 PF06415 BPG-independent PGAM N-terminus (iPGM_N) R615_02745 PF00581 Rhodanese-like domain R615_02750 PF02556 Preprotein translocase subunit SecB R615_02770 PF05598 R615_02770 R615_02770 PF13751 R615_02770 R615_02790 PF00588 SpoU rRNA Methylase family R615_02805 PF04612 Type II secretion system (T2SS), protein M R615_02815 PF00263 R615_02815 R615_02815 PF07655 R615_02815 R615_02820 PF13401 AAA domain R615_02830 PF00437 Type II/IV secretion system protein R615_02830 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain R615_02835 PF00482 Type II secretion system (T2SS), protein F R615_02845 PF07963 Prokaryotic N-terminal methylation motif R615_02850 PF07963 Prokaryotic N-terminal methylation motif R615_02855 PF07963 Prokaryotic N-terminal methylation motif R615_02860 PF07963 Prokaryotic N-terminal methylation motif R615_02890 PF00072 Response regulator receiver domain R615_02890 PF00158 Sigma-54 interaction domain R615_02890 PF02954 Bacterial regulatory protein, Fis family R615_02895 PF00512 His Kinase A (phospho-acceptor) domain R615_02895 PF00989 PAS fold R615_02895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_02900 PF13511 R615_02900 R615_02905 PF02580 D-Tyr-tRNA(Tyr) deacylase R615_02910 PF04247 R615_02910 R615_02920 PF02321 Outer membrane efflux protein R615_02925 PF16576 R615_02925 R615_02930 PF00873 AcrB/AcrD/AcrF family R615_02935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_02935 PF00672 HAMP domain R615_02935 PF12729 R615_02935 R615_02940 PF13640 2OG-Fe(II) oxygenase superfamily R615_02945 PF01169 R615_02945 R615_02965 PF09084 NMT1/THI5 like R615_02970 PF00639 PPIC-type PPIASE domain R615_02975 PF04403 R615_02975 R615_02980 PF03776 Septum formation topological specificity factor MinE R615_02985 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain R615_02990 PF03775 Septum formation inhibitor MinC, C-terminal domain R615_02990 PF05209 Septum formation inhibitor MinC, N-terminal domain R615_03000 PF00817 impB/mucB/samB family R615_03000 PF11798 IMS family HHH motif R615_03005 PF01569 PAP2 superfamily R615_03010 PF00534 Glycosyl transferases group 1 R615_03010 PF13439 Glycosyltransferase Family 4 R615_03015 PF12625 R615_03015 R615_03015 PF12833 Helix-turn-helix domain R615_03030 PF00258 Flavodoxin R615_03035 PF04338 Protein of unknown function, DUF481 R615_03045 PF00440 Bacterial regulatory proteins, tetR family R615_03055 PF01266 FAD dependent oxidoreductase R615_03065 PF10981 R615_03065 R615_03075 PF14357 R615_03075 R615_03080 PF00571 CBS domain R615_03085 PF02954 Bacterial regulatory protein, Fis family R615_03090 PF00534 Glycosyl transferases group 1 R615_03090 PF13439 Glycosyltransferase Family 4 R615_03105 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel R615_03105 PF05036 Sporulation related domain R615_03110 PF13406 Transglycosylase SLT domain R615_03115 PF01098 R615_03115 R615_03120 PF00905 Penicillin binding protein transpeptidase domain R615_03120 PF03717 Penicillin-binding Protein dimerisation domain R615_03125 PF02590 Predicted SPOUT methyltransferase R615_03130 PF02410 Oligomerisation domain R615_03135 PF01467 Cytidylyltransferase R615_03140 PF00171 Aldehyde dehydrogenase family R615_03145 PF00990 GGDEF domain R615_03150 PF00990 GGDEF domain R615_03160 PF04072 Leucine carboxyl methyltransferase R615_03165 PF09335 R615_03165 R615_03175 PF04287 tRNA pseudouridine synthase C R615_03180 PF12069 R615_03180 R615_03185 PF02810 SEC-C motif R615_03200 PF00768 D-alanyl-D-alanine carboxypeptidase R615_03200 PF07943 Penicillin-binding protein 5, C-terminal domain R615_03205 PF04359 Protein of unknown function (DUF493) R615_03210 PF03099 Biotin/lipoate A/B protein ligase family R615_03215 PF04055 Radical SAM superfamily R615_03215 PF16881 R615_03215 R615_03220 PF04325 Protein of unknown function (DUF465) R615_03225 PF00072 Response regulator receiver domain R615_03235 PF00085 Thioredoxin R615_03240 PF00085 Thioredoxin R615_03240 PF02683 R615_03240 R615_03240 PF11412 Disulphide bond corrector protein DsbC R615_03245 PF00348 Polyprenyl synthetase R615_03250 PF00829 Ribosomal prokaryotic L21 protein R615_03255 PF01016 Ribosomal L27 protein R615_03260 PF01018 GTP1/OBG R615_03260 PF01926 50S ribosome-binding GTPase R615_03265 PF00696 Amino acid kinase family R615_03265 PF01472 PUA domain R615_03270 PF00793 DAHP synthetase I family R615_03275 PF01649 Ribosomal protein S20 R615_03280 PF03023 R615_03280 R615_03285 PF01687 Riboflavin kinase R615_03285 PF06574 FAD synthetase R615_03290 PF00133 tRNA synthetases class I (I, L, M and V) R615_03290 PF06827 Zinc finger found in FPG and IleRS R615_03290 PF08264 Anticodon-binding domain of tRNA R615_03295 PF01252 R615_03295 R615_03300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase R615_03305 PF02401 LytB protein R615_03310 PF07963 Prokaryotic N-terminal methylation motif R615_03310 PF16732 R615_03310 R615_03315 PF05567 Neisseria PilC beta-propeller domain R615_03320 PF14341 R615_03320 R615_03325 PF16074 R615_03325 R615_03330 PF07963 Prokaryotic N-terminal methylation motif R615_03335 PF07963 Prokaryotic N-terminal methylation motif R615_03335 PF12019 Type II transport protein GspH R615_03350 PF00072 Response regulator receiver domain R615_03350 PF00158 Sigma-54 interaction domain R615_03350 PF02954 Bacterial regulatory protein, Fis family R615_03355 PF00512 His Kinase A (phospho-acceptor) domain R615_03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_03360 PF00795 Carbon-nitrogen hydrolase R615_03360 PF02540 NAD synthase R615_03375 PF13525 Outer membrane lipoprotein R615_03380 PF00849 RNA pseudouridylate synthase R615_03380 PF01479 S4 domain R615_03385 PF02578 Multi-copper polyphenol oxidoreductase laccase R615_03390 PF00205 Thiamine pyrophosphate enzyme, central domain R615_03390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain R615_03390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain R615_03395 PF10369 Small subunit of acetolactate synthase R615_03395 PF13710 ACT domain R615_03400 PF03232 R615_03400 R615_03405 PF00004 ATPase family associated with various cellular activities (AAA) R615_03410 PF00072 Response regulator receiver domain R615_03410 PF00512 His Kinase A (phospho-acceptor) domain R615_03410 PF07696 7TMR-DISM extracellular 2 R615_03415 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain R615_03415 PF02843 Phosphoribosylglycinamide synthetase, C domain R615_03415 PF02844 Phosphoribosylglycinamide synthetase, N domain R615_03420 PF01808 AICARFT/IMPCHase bienzyme R615_03420 PF02142 MGS-like domain R615_03425 PF02954 Bacterial regulatory protein, Fis family R615_03430 PF01207 Dihydrouridine synthase (Dus) R615_03435 PF11906 R615_03435 R615_03435 PF13719 R615_03435 R615_03440 PF06325 Ribosomal protein L11 methyltransferase (PrmA) R615_03445 PF01220 Dehydroquinase class II R615_03450 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP R615_03455 PF00563 EAL domain R615_03455 PF00990 GGDEF domain R615_03455 PF16448 R615_03455 R615_03460 PF04314 Protein of unknown function (DUF461) R615_03465 PF00034 Cytochrome c R615_03470 PF01968 Hydantoinase/oxoprolinase R615_03470 PF02538 R615_03470 R615_03470 PF05378 R615_03470 R615_03475 PF09851 R615_03475 R615_03480 PF00005 ABC transporter R615_03480 PF12848 ABC transporter R615_03485 PF00990 GGDEF domain R615_03490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family R615_03505 PF00149 Calcineurin-like phosphoesterase R615_03505 PF02872 5'-nucleotidase, C-terminal domain R615_03510 PF00462 Glutaredoxin R615_03515 PF00487 R615_03515 R615_03520 PF02449 Beta-galactosidase R615_03530 PF01464 Transglycosylase SLT domain R615_03530 PF14718 Soluble lytic murein transglycosylase L domain R615_03535 PF01923 Cobalamin adenosyltransferase R615_03540 PF00593 TonB dependent receptor R615_03540 PF07715 TonB-dependent Receptor Plug Domain R615_03545 PF00512 His Kinase A (phospho-acceptor) domain R615_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_03545 PF08448 PAS fold R615_03550 PF02558 Ketopantoate reductase PanE/ApbA R615_03550 PF08546 Ketopantoate reductase PanE/ApbA C terminal R615_03560 PF04461 Protein of unknown function (DUF520) R615_03565 PF07690 Major Facilitator Superfamily R615_03570 PF02811 PHP domain R615_03570 PF07733 Bacterial DNA polymerase III alpha subunit R615_03570 PF14579 Helix-hairpin-helix motif R615_03575 PF00817 impB/mucB/samB family R615_03580 PF03846 Cell division inhibitor SulA R615_03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_03590 PF03466 LysR substrate binding domain R615_03595 PF07715 TonB-dependent Receptor Plug Domain R615_03605 PF11086 R615_03605 R615_03610 PF02353 Mycolic acid cyclopropane synthetase R615_03615 PF07103 R615_03615 R615_03620 PF01593 Flavin containing amine oxidoreductase R615_03625 PF00106 short chain dehydrogenase R615_03630 PF12680 SnoaL-like domain R615_03635 PF00487 R615_03635 R615_03640 PF00875 DNA photolyase R615_03640 PF03441 FAD binding domain of DNA photolyase R615_03645 PF13411 MerR HTH family regulatory protein R615_03650 PF04463 R615_03650 R615_03650 PF08349 R615_03650 R615_03655 PF01903 CbiX R615_03660 PF01593 Flavin containing amine oxidoreductase R615_03660 PF13450 NAD(P)-binding Rossmann-like domain R615_03665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_03665 PF02770 Acyl-CoA dehydrogenase, middle domain R615_03665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_03665 PF12418 R615_03665 R615_03665 PF12806 R615_03665 R615_03670 PF01370 NAD dependent epimerase/dehydratase family R615_03670 PF08338 Domain of unknown function (DUF1731) R615_03695 PF08808 R615_03695 R615_03715 PF05717 R615_03715 R615_03720 PF03050 R615_03720 R615_03720 PF13005 R615_03720 R615_03720 PF13007 R615_03720 R615_03720 PF13817 R615_03720 R615_03740 PF02917 Pertussis toxin, subunit 1 R615_03750 PF01645 Conserved region in glutamate synthase R615_03755 PF02696 R615_03755 R615_03765 PF13531 Bacterial extracellular solute-binding protein R615_03770 PF00528 Binding-protein-dependent transport system inner membrane component R615_03775 PF00005 ABC transporter R615_03775 PF03459 TOBE domain R615_03780 PF00875 DNA photolyase R615_03780 PF03441 FAD binding domain of DNA photolyase R615_03785 PF04244 Deoxyribodipyrimidine photo-lyase-related protein R615_03795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain R615_03795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain R615_03800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_03800 PF02770 Acyl-CoA dehydrogenase, middle domain R615_03800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_03800 PF12418 R615_03800 R615_03800 PF12806 R615_03800 R615_03805 PF00465 Iron-containing alcohol dehydrogenase R615_03810 PF03061 Thioesterase superfamily R615_03815 PF00171 Aldehyde dehydrogenase family R615_03820 PF02219 Methylenetetrahydrofolate reductase R615_03825 PF00487 R615_03825 R615_03830 PF12625 R615_03830 R615_03830 PF12833 Helix-turn-helix domain R615_03840 PF07695 R615_03840 R615_03845 PF07696 7TMR-DISM extracellular 2 R615_03850 PF00990 GGDEF domain R615_03850 PF07695 R615_03850 R615_03850 PF07696 7TMR-DISM extracellular 2 R615_03860 PF01381 Helix-turn-helix R615_03865 PF07804 HipA-like C-terminal domain R615_03865 PF13657 HipA N-terminal domain R615_03875 PF04851 Type III restriction enzyme, res subunit R615_03880 PF13310 R615_03880 R615_03885 PF01555 DNA methylase R615_03890 PF00176 SNF2 family N-terminal domain R615_03890 PF00271 Helicase conserved C-terminal domain R615_03895 PF12728 Helix-turn-helix domain R615_03900 PF01668 SmpB protein R615_03905 PF00209 Sodium:neurotransmitter symporter family R615_03910 PF03364 Polyketide cyclase / dehydrase and lipid transport R615_03915 PF03658 RnfH family Ubiquitin R615_03920 PF04355 SmpA / OmlA family R615_03925 PF01475 Ferric uptake regulator family R615_03930 PF02463 RecF/RecN/SMC N terminal domain R615_03935 PF01025 GrpE R615_03940 PF00012 Hsp70 protein R615_03945 PF00226 DnaJ domain R615_03945 PF00684 DnaJ central domain R615_03945 PF01556 DnaJ C terminal domain R615_03950 PF01113 Dihydrodipicolinate reductase, N-terminus R615_03950 PF05173 Dihydrodipicolinate reductase, C-terminus R615_03960 PF00440 Bacterial regulatory proteins, tetR family R615_03965 PF00117 Glutamine amidotransferase class-I R615_03965 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain R615_03970 PF02142 MGS-like domain R615_03970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain R615_03970 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain R615_03975 PF01272 Transcription elongation factor, GreA/GreB, C-term R615_03975 PF03449 Transcription elongation factor, N-terminal R615_03980 PF00487 R615_03980 R615_03985 PF08223 PaaX-like protein C-terminal domain R615_03990 PF03061 Thioesterase superfamily R615_03995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal R615_03995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III R615_04000 PF01985 CRS1 / YhbY (CRM) domain R615_04005 PF01728 FtsJ-like methyltransferase R615_04010 PF00004 ATPase family associated with various cellular activities (AAA) R615_04010 PF01434 Peptidase family M41 R615_04010 PF06480 FtsH Extracellular R615_04015 PF00809 Pterin binding enzyme R615_04020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain R615_04020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I R615_04020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II R615_04020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III R615_04025 PF00121 Triosephosphate isomerase R615_04030 PF03840 Preprotein translocase SecG subunit R615_04040 PF02576 Uncharacterised BCR, YhbC family COG0779 R615_04040 PF17384 R615_04040 R615_04045 PF00575 S1 RNA binding domain R615_04045 PF08529 NusA N-terminal domain R615_04045 PF13184 NusA-like KH domain R615_04045 PF14520 Helix-hairpin-helix domain R615_04050 PF00009 Elongation factor Tu GTP binding domain R615_04050 PF04760 Translation initiation factor IF-2, N-terminal region R615_04050 PF08364 R615_04050 R615_04050 PF11987 Translation-initiation factor 2 R615_04055 PF02033 Ribosome-binding factor A R615_04060 PF01509 TruB family pseudouridylate synthase (N terminal domain) R615_04060 PF09157 Pseudouridine synthase II TruB, C-terminal R615_04060 PF16198 R615_04060 R615_04065 PF00312 Ribosomal protein S15 R615_04070 PF00013 KH domain R615_04070 PF00575 S1 RNA binding domain R615_04070 PF01138 3' exoribonuclease family, domain 1 R615_04070 PF03725 3' exoribonuclease family, domain 2 R615_04070 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain R615_04075 PF02668 Taurine catabolism dioxygenase TauD, TfdA family R615_04080 PF00082 Subtilase family R615_04095 PF02567 Phenazine biosynthesis-like protein R615_04100 PF00753 Metallo-beta-lactamase superfamily R615_04100 PF07521 RNA-metabolising metallo-beta-lactamase R615_04100 PF10996 Beta-Casp domain R615_04105 PF00591 Glycosyl transferase family, a/b domain R615_04105 PF02885 Glycosyl transferase family, helical bundle domain R615_04105 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain R615_04110 PF00156 Phosphoribosyl transferase domain R615_04110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase R615_04115 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase R615_04115 PF09364 XFP N-terminal domain R615_04120 PF00753 Metallo-beta-lactamase superfamily R615_04130 PF12048 R615_04130 R615_04135 PF00834 Ribulose-phosphate 3 epimerase family R615_04140 PF13419 Haloacid dehalogenase-like hydrolase R615_04145 PF02646 R615_04145 R615_04150 PF00990 GGDEF domain R615_04155 PF13649 Methyltransferase domain R615_04160 PF08003 Protein of unknown function (DUF1698) R615_04165 PF01207 Dihydrouridine synthase (Dus) R615_04170 PF04277 R615_04170 R615_04175 PF00364 Biotin-requiring enzyme R615_04175 PF00682 HMGL-like R615_04175 PF02436 Conserved carboxylase domain R615_04180 PF03977 R615_04180 R615_04185 PF13616 PPIC-type PPIASE domain R615_04190 PF11743 R615_04190 R615_04195 PF14542 GCN5-related N-acetyl-transferase R615_04200 PF00117 Glutamine amidotransferase class-I R615_04205 PF12843 R615_04205 R615_04215 PF00563 EAL domain R615_04215 PF00990 GGDEF domain R615_04215 PF08447 PAS fold R615_04215 PF13426 PAS domain R615_04220 PF06865 Protein of unknown function (DUF1255) R615_04225 PF00270 DEAD/DEAH box helicase R615_04225 PF00271 Helicase conserved C-terminal domain R615_04225 PF03880 DbpA RNA binding domain R615_04230 PF09723 R615_04230 R615_04235 PF03069 Acetamidase/Formamidase family R615_04240 PF07724 AAA domain (Cdc48 subfamily) R615_04240 PF10431 C-terminal, D2-small domain, of ClpB protein R615_04245 PF00795 Carbon-nitrogen hydrolase R615_04250 PF00005 ABC transporter R615_04255 PF00005 ABC transporter R615_04255 PF12399 Branched-chain amino acid ATP-binding cassette transporter R615_04260 PF02653 R615_04260 R615_04265 PF02653 R615_04265 R615_04270 PF13433 Periplasmic binding protein domain R615_04275 PF00072 Response regulator receiver domain R615_04275 PF00512 His Kinase A (phospho-acceptor) domain R615_04275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_04280 PF00072 Response regulator receiver domain R615_04280 PF00196 Bacterial regulatory proteins, luxR family R615_04285 PF00440 Bacterial regulatory proteins, tetR family R615_04290 PF00043 Glutathione S-transferase, C-terminal domain R615_04290 PF02798 Glutathione S-transferase, N-terminal domain R615_04295 PF00043 Glutathione S-transferase, C-terminal domain R615_04295 PF02798 Glutathione S-transferase, N-terminal domain R615_04300 PF03358 NADPH-dependent FMN reductase R615_04305 PF12833 Helix-turn-helix domain R615_04310 PF06751 Ethanolamine ammonia lyase large subunit (EutB) R615_04315 PF05985 Ethanolamine ammonia-lyase light chain (EutC) R615_04320 PF13520 Amino acid permease R615_04325 PF01936 NYN domain R615_04330 PF04828 Glutathione-dependent formaldehyde-activating enzyme R615_04340 PF00580 UvrD/REP helicase N-terminal domain R615_04340 PF13361 UvrD-like helicase C-terminal domain R615_04345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase R615_04355 PF08774 VRR-NUC domain R615_04360 PF04126 Cyclophilin-like R615_04365 PF00682 HMGL-like R615_04365 PF08502 LeuA allosteric (dimerisation) domain R615_04370 PF01037 AsnC family R615_04370 PF13412 Winged helix-turn-helix DNA-binding R615_04375 PF00512 His Kinase A (phospho-acceptor) domain R615_04375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_04380 PF01253 Translation initiation factor SUI1 R615_04385 PF02525 Flavodoxin-like fold R615_04390 PF00999 Sodium/hydrogen exchanger family R615_04390 PF02254 TrkA-N domain R615_04395 PF13279 Thioesterase-like superfamily R615_04400 PF14437 R615_04400 R615_04405 PF00497 Bacterial extracellular solute-binding proteins, family 3 R615_04405 PF01464 Transglycosylase SLT domain R615_04410 PF02769 AIR synthase related protein, C-terminal domain R615_04410 PF13507 CobB/CobQ-like glutamine amidotransferase domain R615_04415 PF12476 R615_04415 R615_04415 PF13175 AAA ATPase domain R615_04425 PF01381 Helix-turn-helix R615_04430 PF06296 R615_04430 R615_04440 PF05717 R615_04440 R615_04445 PF03050 R615_04445 R615_04445 PF13005 R615_04445 R615_04445 PF13007 R615_04445 R615_04445 PF13817 R615_04445 R615_04450 PF00027 Cyclic nucleotide-binding domain R615_04455 PF01124 MAPEG family R615_04470 PF01507 Phosphoadenosine phosphosulfate reductase family R615_04480 PF00520 Ion transport protein R615_04490 PF01895 PhoU domain R615_04490 PF02690 R615_04490 R615_04500 PF07690 Major Facilitator Superfamily R615_04510 PF00886 Ribosomal protein S16 R615_04515 PF01782 RimM N-terminal domain R615_04515 PF05239 PRC-barrel domain R615_04520 PF01746 tRNA (Guanine-1)-methyltransferase R615_04525 PF01245 Ribosomal protein L19 R615_04530 PF13098 Thioredoxin-like domain R615_04535 PF00849 RNA pseudouridylate synthase R615_04540 PF12697 Alpha/beta hydrolase family R615_04550 PF00999 Sodium/hydrogen exchanger family R615_04550 PF02254 TrkA-N domain R615_04560 PF02562 PhoH-like protein R615_04560 PF13638 PIN domain R615_04575 PF06808 R615_04575 R615_04585 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_04590 PF01435 Peptidase family M48 R615_04595 PF01906 Putative heavy-metal-binding R615_04600 PF01906 Putative heavy-metal-binding R615_04605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_04605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_04605 PF09317 R615_04605 R615_04615 PF00691 OmpA family R615_04625 PF02627 Carboxymuconolactone decarboxylase family R615_04630 PF12146 Putative lysophospholipase R615_04635 PF00753 Metallo-beta-lactamase superfamily R615_04640 PF00440 Bacterial regulatory proteins, tetR family R615_04645 PF07751 R615_04645 R615_04650 PF06114 Domain of unknown function (DUF955) R615_04655 PF09907 R615_04655 R615_04665 PF01420 Type I restriction modification DNA specificity domain R615_04670 PF02384 N-6 DNA Methylase R615_04670 PF12161 HsdM N-terminal domain R615_04675 PF00271 Helicase conserved C-terminal domain R615_04675 PF04851 Type III restriction enzyme, res subunit R615_04675 PF08463 R615_04675 R615_04675 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) R615_04685 PF14090 R615_04685 R615_04690 PF05930 Prophage CP4-57 regulatory protein (AlpA) R615_04700 PF00589 Phage integrase family R615_04700 PF13356 Domain of unknown function (DUF4102) R615_04710 PF07238 PilZ domain R615_04710 PF07317 Flagellar regulator YcgR R615_04715 PF05130 FlgN protein R615_04720 PF04316 Anti-sigma-28 factor, FlgM R615_04725 PF13144 SAF-like R615_04730 PF00072 Response regulator receiver domain R615_04730 PF01584 CheW-like domain R615_04735 PF01739 CheR methyltransferase, SAM binding domain R615_04735 PF03705 CheR methyltransferase, all-alpha domain R615_04740 PF00460 Flagella basal body rod protein R615_04745 PF00460 Flagella basal body rod protein R615_04745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal R615_04750 PF03963 R615_04750 R615_04750 PF13860 FlgD Ig-like domain R615_04750 PF13861 FlgD Tudor-like domain R615_04755 PF00460 Flagella basal body rod protein R615_04755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal R615_04755 PF07559 Flagellar basal body protein FlaE R615_04760 PF00460 Flagella basal body rod protein R615_04760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal R615_04765 PF00460 Flagella basal body rod protein R615_04765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal R615_04770 PF02107 R615_04770 R615_04775 PF01797 Transposase IS200 like R615_04785 PF02119 R615_04785 R615_04790 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase R615_04790 PF10135 R615_04790 R615_04795 PF00460 Flagella basal body rod protein R615_04795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal R615_04800 PF00669 Bacterial flagellin N-terminal helical region R615_04800 PF00700 Bacterial flagellin C-terminal helical region R615_04805 PF00149 Calcineurin-like phosphoesterase R615_04810 PF04932 R615_04810 R615_04820 PF01583 Adenylylsulphate kinase R615_04830 PF01370 NAD dependent epimerase/dehydratase family R615_04835 PF04230 R615_04835 R615_04840 PF13440 R615_04840 R615_04845 PF04932 R615_04845 R615_04850 PF13692 Glycosyl transferases group 1 R615_04860 PF03808 R615_04860 R615_04865 PF16363 R615_04865 R615_04870 PF01370 NAD dependent epimerase/dehydratase family R615_04875 PF00293 NUDIX domain R615_04905 PF05717 R615_04905 R615_04930 PF01909 Nucleotidyltransferase domain R615_04935 PF08780 Nucleotidyltransferase substrate binding protein like R615_04940 PF00483 Nucleotidyl transferase R615_04940 PF01050 Mannose-6-phosphate isomerase R615_04945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain R615_04945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I R615_04945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II R615_04945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III R615_04960 PF01909 Nucleotidyltransferase domain R615_04965 PF08780 Nucleotidyltransferase substrate binding protein like R615_04970 PF16363 R615_04970 R615_04975 PF00483 Nucleotidyl transferase R615_04980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase R615_04985 PF04321 RmlD substrate binding domain R615_04990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain R615_04990 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain R615_04990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain R615_04995 PF00753 Metallo-beta-lactamase superfamily R615_04995 PF07521 RNA-metabolising metallo-beta-lactamase R615_04995 PF10996 Beta-Casp domain R615_05000 PF02397 R615_05000 R615_05000 PF13727 CoA-binding domain R615_05010 PF10082 R615_05010 R615_05015 PF02563 Polysaccharide biosynthesis/export protein R615_05015 PF10531 SLBB domain R615_05020 PF02706 Chain length determinant protein R615_05020 PF13614 AAA domain R615_05020 PF13807 R615_05020 R615_05030 PF00669 Bacterial flagellin N-terminal helical region R615_05030 PF00700 Bacterial flagellin C-terminal helical region R615_05030 PF07196 Flagellin hook IN motif R615_05035 PF03646 FlaG protein R615_05040 PF02465 R615_05040 R615_05040 PF07195 R615_05040 R615_05040 PF07196 Flagellin hook IN motif R615_05045 PF04324 BFD-like [2Fe-2S] binding domain R615_05050 PF00472 RF-1 domain R615_05050 PF03462 PCRF domain R615_05055 PF00152 tRNA synthetases class II (D, K and N) R615_05055 PF01336 OB-fold nucleic acid binding domain R615_05060 PF03167 Uracil DNA glycosylase superfamily R615_05065 PF13847 Methyltransferase domain R615_05070 PF02561 Flagellar protein FliS R615_05075 PF00158 Sigma-54 interaction domain R615_05075 PF02954 Bacterial regulatory protein, Fis family R615_05075 PF06490 R615_05075 R615_05085 PF00512 His Kinase A (phospho-acceptor) domain R615_05085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_05090 PF00072 Response regulator receiver domain R615_05090 PF00158 Sigma-54 interaction domain R615_05090 PF02954 Bacterial regulatory protein, Fis family R615_05095 PF02049 R615_05095 R615_05100 PF01514 Secretory protein of YscJ/FliF family R615_05100 PF08345 R615_05100 R615_05105 PF01706 FliG C-terminal domain R615_05105 PF14841 FliG middle domain R615_05105 PF14842 FliG N-terminal domain R615_05110 PF02108 R615_05110 R615_05115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain R615_05115 PF02874 ATP synthase alpha/beta family, beta-barrel domain R615_05120 PF02050 Flagellar FliJ protein R615_05125 PF13466 STAS domain R615_05130 PF00072 Response regulator receiver domain R615_05135 PF01584 CheW-like domain R615_05135 PF01627 Hpt domain R615_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_05135 PF02895 Signal transducing histidine kinase, homodimeric domain R615_05150 PF01739 CheR methyltransferase, SAM binding domain R615_05150 PF03705 CheR methyltransferase, all-alpha domain R615_05155 PF03975 CheD chemotactic sensory transduction R615_05160 PF00072 Response regulator receiver domain R615_05160 PF01339 CheB methylesterase R615_05165 PF13466 STAS domain R615_05170 PF00072 Response regulator receiver domain R615_05170 PF07228 Stage II sporulation protein E (SpoIIE) R615_05170 PF13581 Histidine kinase-like ATPase domain R615_05175 PF01627 Hpt domain R615_05180 PF02120 Flagellar hook-length control protein FliK R615_05185 PF03748 R615_05185 R615_05190 PF01052 Surface presentation of antigens (SPOA) R615_05190 PF02154 Flagellar motor switch protein FliM R615_05195 PF01052 Surface presentation of antigens (SPOA) R615_05200 PF04347 R615_05200 R615_05205 PF00813 R615_05205 R615_05210 PF01313 R615_05210 R615_05215 PF01311 R615_05215 R615_05220 PF01312 FlhB HrpN YscU SpaS Family R615_05230 PF00771 FHIPEP family R615_05235 PF00448 SRP54-type protein, GTPase domain R615_05240 PF10609 ParA/MinD ATPase like R615_05245 PF04539 Sigma-70 region 3 R615_05245 PF04542 Sigma-70 region 2 R615_05245 PF04545 Sigma-70, region 4 R615_05250 PF00072 Response regulator receiver domain R615_05255 PF04344 Chemotaxis phosphatase, CheZ R615_05260 PF01584 CheW-like domain R615_05260 PF01627 Hpt domain R615_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_05260 PF02895 Signal transducing histidine kinase, homodimeric domain R615_05265 PF00072 Response regulator receiver domain R615_05265 PF01339 CheB methylesterase R615_05270 PF13614 AAA domain R615_05280 PF01584 CheW-like domain R615_05285 PF01584 CheW-like domain R615_05290 PF10975 R615_05290 R615_05300 PF01124 MAPEG family R615_05310 PF06127 R615_05310 R615_05315 PF12625 R615_05315 R615_05315 PF12833 Helix-turn-helix domain R615_05320 PF00578 AhpC/TSA family R615_05325 PF00111 2Fe-2S iron-sulfur cluster binding domain R615_05330 PF00268 Ribonucleotide reductase, small chain R615_05335 PF00317 Ribonucleotide reductase, all-alpha domain R615_05335 PF02867 Ribonucleotide reductase, barrel domain R615_05335 PF03477 ATP cone domain R615_05340 PF00072 Response regulator receiver domain R615_05340 PF00486 Transcriptional regulatory protein, C terminal R615_05345 PF00512 His Kinase A (phospho-acceptor) domain R615_05345 PF00672 HAMP domain R615_05345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_05350 PF03466 LysR substrate binding domain R615_05355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_05355 PF08447 PAS fold R615_05360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain R615_05360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain R615_05365 PF00990 GGDEF domain R615_05370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain R615_05370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain R615_05375 PF00202 Aminotransferase class-III R615_05380 PF08443 RimK-like ATP-grasp domain R615_05385 PF05618 Putative ATP-dependant zinc protease R615_05390 PF04219 R615_05390 R615_05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_05395 PF03466 LysR substrate binding domain R615_05400 PF00107 Zinc-binding dehydrogenase R615_05400 PF08240 Alcohol dehydrogenase GroES-like domain R615_05410 PF06508 Queuosine biosynthesis protein QueC R615_05430 PF00042 Globin R615_05435 PF01435 Peptidase family M48 R615_05440 PF00270 DEAD/DEAH box helicase R615_05440 PF00271 Helicase conserved C-terminal domain R615_05445 PF02678 Pirin R615_05445 PF05726 Pirin C-terminal cupin domain R615_05450 PF01966 HD domain R615_05450 PF08335 GlnD PII-uridylyltransferase R615_05455 PF00557 Metallopeptidase family M24 R615_05460 PF00318 Ribosomal protein S2 R615_05465 PF00889 Elongation factor TS R615_05470 PF00696 Amino acid kinase family R615_05475 PF01765 Ribosome recycling factor R615_05480 PF01255 Putative undecaprenyl diphosphate synthase R615_05485 PF01148 Cytidylyltransferase family R615_05490 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase R615_05490 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal R615_05490 PF13288 DXP reductoisomerase C-terminal domain R615_05495 PF02163 Peptidase family M50 R615_05495 PF13180 PDZ domain R615_05500 PF01103 Surface antigen R615_05500 PF07244 Surface antigen variable number repeat R615_05505 PF03938 Outer membrane protein (OmpH-like) R615_05510 PF00132 Bacterial transferase hexapeptide (six repeats) R615_05510 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD R615_05515 PF07977 FabA-like domain R615_05520 PF00132 Bacterial transferase hexapeptide (six repeats) R615_05520 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 R615_05525 PF02684 R615_05525 R615_05530 PF01351 Ribonuclease HII R615_05535 PF01553 Acyltransferase R615_05540 PF03486 HI0933-like protein R615_05550 PF00072 Response regulator receiver domain R615_05550 PF13487 HD domain R615_05555 PF07700 Heme NO binding R615_05560 PF00512 His Kinase A (phospho-acceptor) domain R615_05560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_05565 PF02129 X-Pro dipeptidyl-peptidase (S15 family) R615_05570 PF00463 Isocitrate lyase family R615_05575 PF00111 2Fe-2S iron-sulfur cluster binding domain R615_05575 PF00175 Oxidoreductase NAD-binding domain R615_05575 PF00970 Oxidoreductase FAD-binding domain R615_05580 PF00487 R615_05580 R615_05585 PF02608 Basic membrane protein R615_05590 PF00962 Adenosine/AMP deaminase R615_05595 PF00378 Enoyl-CoA hydratase/isomerase family R615_05600 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain R615_05600 PF00364 Biotin-requiring enzyme R615_05600 PF02626 Allophanate hydrolase subunit 2 R615_05600 PF02682 Allophanate hydrolase subunit 1 R615_05600 PF02785 Biotin carboxylase C-terminal domain R615_05600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain R615_05605 PF09347 Domain of unknown function (DUF1989) R615_05610 PF09347 Domain of unknown function (DUF1989) R615_05615 PF09084 NMT1/THI5 like R615_05620 PF00528 Binding-protein-dependent transport system inner membrane component R615_05625 PF00005 ABC transporter R615_05630 PF02633 Creatinine amidohydrolase R615_05635 PF00120 Glutamine synthetase, catalytic domain R615_05640 PF01402 Ribbon-helix-helix protein, copG family R615_05640 PF08753 NikR C terminal nickel binding domain R615_05645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_05645 PF03466 LysR substrate binding domain R615_05650 PF00892 EamA-like transporter family R615_05655 PF13740 ACT domain R615_05660 PF00155 Aminotransferase class I and II R615_05665 PF00742 Homoserine dehydrogenase R615_05665 PF01842 ACT domain R615_05665 PF03447 Homoserine dehydrogenase, NAD binding domain R615_05675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_05675 PF03466 LysR substrate binding domain R615_05685 PF00849 RNA pseudouridylate synthase R615_05685 PF01479 S4 domain R615_05690 PF01263 Aldose 1-epimerase R615_05695 PF01272 Transcription elongation factor, GreA/GreB, C-term R615_05700 PF07045 Protein of unknown function (DUF1330) R615_05705 PF06062 R615_05705 R615_05710 PF00929 Exonuclease R615_05715 PF01979 Amidohydrolase family R615_05720 PF00691 OmpA family R615_05725 PF00764 Arginosuccinate synthase R615_05735 PF05016 Plasmid stabilisation system protein R615_05740 PF01381 Helix-turn-helix R615_05745 PF13175 AAA ATPase domain R615_05750 PF13245 Part of AAA domain R615_05750 PF13361 UvrD-like helicase C-terminal domain R615_05765 PF05717 R615_05765 R615_05770 PF03050 R615_05770 R615_05770 PF13005 R615_05770 R615_05770 PF13007 R615_05770 R615_05770 PF13817 R615_05770 R615_05790 PF00849 RNA pseudouridylate synthase R615_05815 PF14375 R615_05815 R615_05820 PF01863 Protein of unknown function DUF45 R615_05825 PF06146 R615_05825 R615_05830 PF13450 NAD(P)-binding Rossmann-like domain R615_05835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_05835 PF03466 LysR substrate binding domain R615_05840 PF00175 Oxidoreductase NAD-binding domain R615_05840 PF00970 Oxidoreductase FAD-binding domain R615_05850 PF02253 Phospholipase A1 R615_05855 PF01513 ATP-NAD kinase R615_05860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_05865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily R615_05870 PF00633 Helix-hairpin-helix motif R615_05870 PF00730 HhH-GPD superfamily base excision DNA repair protein R615_05870 PF10576 Iron-sulfur binding domain of endonuclease III R615_05880 PF00691 OmpA family R615_05880 PF13505 Outer membrane protein beta-barrel domain R615_05885 PF14602 Hexapeptide repeat of succinyl-transferase R615_05885 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle R615_05890 PF03960 ArsC family R615_05895 PF00072 Response regulator receiver domain R615_05895 PF00512 His Kinase A (phospho-acceptor) domain R615_05895 PF01627 Hpt domain R615_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_05895 PF08448 PAS fold R615_05900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_05900 PF08376 Nitrate and nitrite sensing R615_05905 PF02230 Phospholipase/Carboxylesterase R615_05910 PF01168 Alanine racemase, N-terminal domain R615_05915 PF01883 Domain of unknown function DUF59 R615_05920 PF01521 Iron-sulphur cluster biosynthesis R615_05925 PF00266 Aminotransferase class-V R615_05930 PF01458 Uncharacterized protein family (UPF0051) R615_05935 PF00005 ABC transporter R615_05940 PF01458 Uncharacterized protein family (UPF0051) R615_05945 PF02082 Transcriptional regulator R615_05950 PF09932 R615_05950 R615_05955 PF00899 ThiF family R615_05970 PF11067 R615_05970 R615_05975 PF01926 50S ribosome-binding GTPase R615_05975 PF11981 R615_05975 R615_05980 PF04245 R615_05980 R615_05985 PF11042 R615_05985 R615_05990 PF00255 Glutathione peroxidase R615_05995 PF02308 R615_05995 R615_06000 PF00012 Hsp70 protein R615_06005 PF01914 R615_06005 R615_06010 PF06934 R615_06010 R615_06015 PF00043 Glutathione S-transferase, C-terminal domain R615_06015 PF02798 Glutathione S-transferase, N-terminal domain R615_06020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_06020 PF02743 Cache domain R615_06030 PF11071 R615_06030 R615_06035 PF09842 R615_06035 R615_06040 PF03358 NADPH-dependent FMN reductase R615_06045 PF03960 ArsC family R615_06050 PF03631 R615_06050 R615_06055 PF11902 R615_06055 R615_06070 PF05960 Bacterial protein of unknown function (DUF885) R615_06075 PF16234 R615_06075 R615_06080 PF01734 Patatin-like phospholipase R615_06085 PF05175 Methyltransferase small domain R615_06090 PF01264 Chorismate synthase R615_06095 PF12832 MFS_1 like family R615_06105 PF09361 R615_06105 R615_06110 PF07167 R615_06110 R615_06120 PF06794 Uncharacterised protein family (UPF0270) R615_06125 PF01266 FAD dependent oxidoreductase R615_06125 PF05430 S-adenosyl-L-methionine-dependent methyltransferase R615_06130 PF03547 R615_06130 R615_06135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD R615_06140 PF10262 Rdx family R615_06145 PF08239 Bacterial SH3 domain R615_06150 PF03795 YCII-related domain R615_06155 PF04279 R615_06155 R615_06160 PF02811 PHP domain R615_06165 PF01300 Telomere recombination R615_06170 PF00579 tRNA synthetases class I (W and Y) R615_06175 PF00579 tRNA synthetases class I (W and Y) R615_06180 PF02616 ScpA/B protein R615_06185 PF04079 Putative transcriptional regulators (Ypuh-like) R615_06190 PF00849 RNA pseudouridylate synthase R615_06190 PF01479 S4 domain R615_06195 PF00990 GGDEF domain R615_06200 PF00106 short chain dehydrogenase R615_06205 PF13419 Haloacid dehalogenase-like hydrolase R615_06210 PF13489 Methyltransferase domain R615_06215 PF01979 Amidohydrolase family R615_06220 PF00521 DNA gyrase/topoisomerase IV, subunit A R615_06220 PF03989 DNA gyrase C-terminal domain, beta-propeller R615_06225 PF02706 Chain length determinant protein R615_06225 PF13807 R615_06225 R615_06230 PF00266 Aminotransferase class-V R615_06235 PF00800 Prephenate dehydratase R615_06235 PF01817 Chorismate mutase type II R615_06235 PF01842 ACT domain R615_06240 PF00155 Aminotransferase class I and II R615_06245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) R615_06245 PF02153 Prephenate dehydrogenase R615_06250 PF02224 Cytidylate kinase R615_06255 PF00575 S1 RNA binding domain R615_06260 PF00216 Bacterial DNA-binding protein R615_06265 PF13432 Tetratricopeptide repeat R615_06270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family R615_06275 PF02357 Transcription termination factor nusG R615_06280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain R615_06285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain R615_06285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain R615_06285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain R615_06290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold R615_06290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain R615_06295 PF00132 Bacterial transferase hexapeptide (six repeats) R615_06300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family R615_06315 PF02350 UDP-N-acetylglucosamine 2-epimerase R615_06320 PF00534 Glycosyl transferases group 1 R615_06320 PF13439 Glycosyltransferase Family 4 R615_06325 PF00535 Glycosyl transferase family 2 R615_06330 PF16363 R615_06330 R615_06335 PF00483 Nucleotidyl transferase R615_06340 PF05523 WxcM-like, C-terminal R615_06345 PF13302 Acetyltransferase (GNAT) domain R615_06350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family R615_06355 PF02397 R615_06355 R615_06360 PF00132 Bacterial transferase hexapeptide (six repeats) R615_06380 PF16363 R615_06380 R615_06385 PF00692 dUTPase R615_06390 PF11306 Protein of unknown function (DUF3108) R615_06395 PF00551 Formyl transferase R615_06400 PF00586 AIR synthase related protein, N-terminal domain R615_06400 PF02769 AIR synthase related protein, C-terminal domain R615_06405 PF09839 R615_06405 R615_06410 PF00308 Bacterial dnaA protein R615_06415 PF00155 Aminotransferase class I and II R615_06420 PF00271 Helicase conserved C-terminal domain R615_06420 PF02151 UvrB/uvrC motif R615_06420 PF04851 Type III restriction enzyme, res subunit R615_06420 PF12344 Ultra-violet resistance protein B R615_06425 PF02333 Phytase R615_06430 PF00593 TonB dependent receptor R615_06430 PF07715 TonB-dependent Receptor Plug Domain R615_06430 PF13620 Carboxypeptidase regulatory-like domain R615_06435 PF00990 GGDEF domain R615_06440 PF12625 R615_06440 R615_06440 PF12833 Helix-turn-helix domain R615_06455 PF00149 Calcineurin-like phosphoesterase R615_06455 PF02872 5'-nucleotidase, C-terminal domain R615_06460 PF07730 Histidine kinase R615_06465 PF00072 Response regulator receiver domain R615_06465 PF00196 Bacterial regulatory proteins, luxR family R615_06470 PF08450 SMP-30/Gluconolaconase/LRE-like region R615_06475 PF02384 N-6 DNA Methylase R615_06475 PF12161 HsdM N-terminal domain R615_06495 PF14088 R615_06495 R615_06505 PF06414 Zeta toxin R615_06515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) R615_06515 PF04851 Type III restriction enzyme, res subunit R615_06515 PF11867 R615_06515 R615_06535 PF05717 R615_06535 R615_06550 PF00586 AIR synthase related protein, N-terminal domain R615_06550 PF02769 AIR synthase related protein, C-terminal domain R615_06560 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein R615_06565 PF00005 ABC transporter R615_06575 PF04116 R615_06575 R615_06580 PF12625 R615_06580 R615_06580 PF12833 Helix-turn-helix domain R615_06585 PF07859 alpha/beta hydrolase fold R615_06590 PF13469 Sulfotransferase family R615_06595 PF00132 Bacterial transferase hexapeptide (six repeats) R615_06600 PF00132 Bacterial transferase hexapeptide (six repeats) R615_06605 PF00550 Phosphopantetheine attachment site R615_06610 PF01947 Protein of unknown function (DUF98) R615_06615 PF00501 AMP-binding enzyme R615_06615 PF13193 AMP-binding enzyme C-terminal domain R615_06620 PF00535 Glycosyl transferase family 2 R615_06625 PF00288 GHMP kinases N terminal domain R615_06625 PF08544 GHMP kinases C terminal R615_06630 PF13439 Glycosyltransferase Family 4 R615_06630 PF13692 Glycosyl transferases group 1 R615_06640 PF00132 Bacterial transferase hexapeptide (six repeats) R615_06645 PF04307 R615_06645 R615_06650 PF16576 R615_06650 R615_06655 PF02321 Outer membrane efflux protein R615_06660 PF01943 R615_06660 R615_06660 PF14667 Polysaccharide biosynthesis C-terminal domain R615_06675 PF13231 R615_06675 R615_06680 PF00483 Nucleotidyl transferase R615_06685 PF02449 Beta-galactosidase R615_06690 PF13580 SIS domain R615_06700 PF09423 PhoD-like phosphatase R615_06700 PF16655 R615_06700 R615_06705 PF02449 Beta-galactosidase R615_06710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) R615_06710 PF02824 TGS domain R615_06710 PF03129 Anticodon binding domain R615_06710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain R615_06715 PF00707 Translation initiation factor IF-3, C-terminal domain R615_06715 PF05198 Translation initiation factor IF-3, N-terminal domain R615_06720 PF01632 Ribosomal protein L35 R615_06725 PF00453 Ribosomal protein L20 R615_06730 PF01409 tRNA synthetases class II core domain (F) R615_06730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain R615_06735 PF01588 Putative tRNA binding domain R615_06735 PF03147 Ferredoxin-fold anticodon binding domain R615_06735 PF03483 B3/4 domain R615_06735 PF03484 tRNA synthetase B5 domain R615_06740 PF00216 Bacterial DNA-binding protein R615_06745 PF13411 MerR HTH family regulatory protein R615_06760 PF00106 short chain dehydrogenase R615_06770 PF05717 R615_06770 R615_06775 PF13007 R615_06775 R615_06780 PF14552 Tautomerase enzyme R615_06785 PF09905 Uncharacterized conserved protein (DUF2132) R615_06795 PF00043 Glutathione S-transferase, C-terminal domain R615_06795 PF13417 Glutathione S-transferase, N-terminal domain R615_06825 PF00892 EamA-like transporter family R615_06830 PF02687 R615_06830 R615_06830 PF12704 MacB-like periplasmic core domain R615_06835 PF02687 R615_06835 R615_06835 PF12704 MacB-like periplasmic core domain R615_06840 PF00005 ABC transporter R615_06845 PF00529 HlyD family secretion protein R615_06845 PF16576 R615_06845 R615_06850 PF00156 Phosphoribosyl transferase domain R615_06855 PF00156 Phosphoribosyl transferase domain R615_06865 PF09831 R615_06865 R615_06870 PF02222 ATP-grasp domain R615_06875 PF00731 AIR carboxylase R615_06880 PF00512 His Kinase A (phospho-acceptor) domain R615_06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_06885 PF00501 AMP-binding enzyme R615_06885 PF13193 AMP-binding enzyme C-terminal domain R615_06890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_06890 PF02770 Acyl-CoA dehydrogenase, middle domain R615_06895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_06895 PF02770 Acyl-CoA dehydrogenase, middle domain R615_06895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_06900 PF03883 R615_06900 R615_06905 PF03923 R615_06905 R615_06910 PF00595 PDZ domain (Also known as DHR or GLGF) R615_06910 PF03572 Peptidase family S41 R615_06910 PF11818 R615_06910 R615_06915 PF13279 Thioesterase-like superfamily R615_06920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_06920 PF03466 LysR substrate binding domain R615_06925 PF00892 EamA-like transporter family R615_06930 PF00004 ATPase family associated with various cellular activities (AAA) R615_06930 PF02861 Clp amino terminal domain R615_06930 PF07724 AAA domain (Cdc48 subfamily) R615_06930 PF10431 C-terminal, D2-small domain, of ClpB protein R615_06935 PF14343 R615_06935 R615_06940 PF02075 Crossover junction endodeoxyribonuclease RuvC R615_06945 PF01330 RuvA N terminal domain R615_06945 PF07499 RuvA, C-terminal domain R615_06945 PF14520 Helix-hairpin-helix domain R615_06950 PF05491 Holliday junction DNA helicase ruvB C-terminus R615_06950 PF05496 Holliday junction DNA helicase ruvB N-terminus R615_06955 PF03061 Thioesterase superfamily R615_06960 PF01618 R615_06960 R615_06965 PF02472 Biopolymer transport protein ExbD/TolR R615_06975 PF04052 TolB amino-terminal domain R615_06975 PF07676 WD40-like Beta Propeller Repeat R615_06980 PF00691 OmpA family R615_06985 PF13174 Tetratricopeptide repeat R615_06985 PF13432 Tetratricopeptide repeat R615_06985 PF16331 R615_06985 R615_07000 PF02445 Quinolinate synthetase A protein R615_07005 PF01435 Peptidase family M48 R615_07005 PF14559 Tetratricopeptide repeat R615_07010 PF01206 Sulfurtransferase TusA R615_07015 PF01594 R615_07015 R615_07020 PF00701 Dihydrodipicolinate synthetase family R615_07025 PF06804 NlpB/DapX lipoprotein R615_07030 PF12706 Beta-lactamase superfamily domain R615_07035 PF01259 SAICAR synthetase R615_07055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase R615_07055 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase R615_07075 PF00483 Nucleotidyl transferase R615_07080 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain R615_07080 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain R615_07085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase R615_07090 PF00920 Dehydratase family R615_07095 PF01081 KDPG and KHG aldolase R615_07100 PF00128 Alpha amylase, catalytic domain R615_07105 PF04116 R615_07105 R615_07110 PF01163 RIO1 family R615_07120 PF08282 haloacid dehalogenase-like hydrolase R615_07125 PF00485 Phosphoribulokinase / Uridine kinase family R615_07130 PF00800 Prephenate dehydratase R615_07135 PF00072 Response regulator receiver domain R615_07135 PF00512 His Kinase A (phospho-acceptor) domain R615_07135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_07135 PF07695 R615_07135 R615_07135 PF07696 7TMR-DISM extracellular 2 R615_07140 PF12625 R615_07140 R615_07140 PF12833 Helix-turn-helix domain R615_07145 PF00990 GGDEF domain R615_07155 PF13622 Thioesterase-like superfamily R615_07160 PF03061 Thioesterase superfamily R615_07165 PF03061 Thioesterase superfamily R615_07170 PF01964 ThiC family R615_07170 PF13667 ThiC-associated domain R615_07175 PF01266 FAD dependent oxidoreductase R615_07180 PF02597 ThiS family R615_07185 PF05690 Thiazole biosynthesis protein ThiG R615_07190 PF02581 Thiamine monophosphate synthase/TENI R615_07190 PF08543 Phosphomethylpyrimidine kinase R615_07195 PF00183 Hsp90 protein R615_07195 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_07200 PF07437 R615_07200 R615_07215 PF03846 Cell division inhibitor SulA R615_07220 PF00717 Peptidase S24-like R615_07220 PF01726 LexA DNA binding domain R615_07225 PF00440 Bacterial regulatory proteins, tetR family R615_07230 PF03734 L,D-transpeptidase catalytic domain R615_07235 PF00933 Glycosyl hydrolase family 3 N terminal domain R615_07240 PF01048 Phosphorylase superfamily R615_07250 PF03092 R615_07250 R615_07255 PF10972 R615_07255 R615_07260 PF00270 DEAD/DEAH box helicase R615_07260 PF00271 Helicase conserved C-terminal domain R615_07260 PF02559 CarD-like/TRCF domain R615_07260 PF03461 TRCF domain R615_07265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain R615_07265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain R615_07270 PF05896 R615_07270 R615_07270 PF11973 R615_07270 R615_07275 PF03116 R615_07275 R615_07280 PF04205 FMN-binding domain R615_07285 PF02508 R615_07285 R615_07290 PF02508 R615_07290 R615_07295 PF00111 2Fe-2S iron-sulfur cluster binding domain R615_07295 PF00175 Oxidoreductase NAD-binding domain R615_07295 PF00970 Oxidoreductase FAD-binding domain R615_07300 PF00487 R615_07300 R615_07305 PF00182 Chitinase class I R615_07305 PF01471 Putative peptidoglycan binding domain R615_07310 PF00106 short chain dehydrogenase R615_07355 PF03235 R615_07355 R615_07365 PF14065 R615_07365 R615_07375 PF04984 Phage tail sheath protein R615_07375 PF17482 R615_07375 R615_07380 PF06841 R615_07380 R615_07385 PF06841 R615_07385 R615_07400 PF05954 Phage late control gene D protein (GPD) R615_07405 PF05488 PAAR motif R615_07410 PF04965 Gene 25-like lysozyme R615_07415 PF04865 R615_07415 R615_07435 PF13699 R615_07435 R615_07440 PF00004 ATPase family associated with various cellular activities (AAA) R615_07445 PF12833 Helix-turn-helix domain R615_07450 PF13508 Acetyltransferase (GNAT) domain R615_07460 PF03435 Saccharopine dehydrogenase R615_07465 PF01022 Bacterial regulatory protein, arsR family R615_07470 PF01451 Low molecular weight phosphotyrosine protein phosphatase R615_07475 PF01758 Sodium Bile acid symporter family R615_07485 PF04654 R615_07485 R615_07490 PF00171 Aldehyde dehydrogenase family R615_07490 PF01619 Proline dehydrogenase R615_07490 PF14850 DNA-binding domain of Proline dehydrogenase R615_07495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase R615_07495 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase R615_07505 PF00270 DEAD/DEAH box helicase R615_07505 PF00271 Helicase conserved C-terminal domain R615_07510 PF07152 YaeQ protein R615_07515 PF13560 Helix-turn-helix domain R615_07520 PF07804 HipA-like C-terminal domain R615_07520 PF13657 HipA N-terminal domain R615_07530 PF00563 EAL domain R615_07530 PF00990 GGDEF domain R615_07535 PF00487 R615_07535 R615_07540 PF12625 R615_07540 R615_07540 PF12833 Helix-turn-helix domain R615_07545 PF00501 AMP-binding enzyme R615_07545 PF13193 AMP-binding enzyme C-terminal domain R615_07550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_07550 PF02770 Acyl-CoA dehydrogenase, middle domain R615_07550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_07550 PF12418 R615_07550 R615_07550 PF12806 R615_07550 R615_07555 PF17149 R615_07555 R615_07560 PF03922 OmpW family R615_07565 PF00106 short chain dehydrogenase R615_07570 PF13091 PLD-like domain R615_07570 PF13396 R615_07570 R615_07575 PF01227 GTP cyclohydrolase I R615_07580 PF01177 Asp/Glu/Hydantoin racemase R615_07585 PF00990 GGDEF domain R615_07590 PF04264 YceI-like domain R615_07595 PF10675 R615_07595 R615_07600 PF00916 R615_07600 R615_07600 PF01740 STAS domain R615_07605 PF01022 Bacterial regulatory protein, arsR family R615_07610 PF00753 Metallo-beta-lactamase superfamily R615_07615 PF05117 R615_07615 R615_07620 PF01926 50S ribosome-binding GTPase R615_07635 PF01722 BolA-like protein R615_07640 PF01852 START domain R615_07645 PF00691 OmpA family R615_07645 PF12849 PBP superfamily domain R615_07650 PF03695 Uncharacterised protein family (UPF0149) R615_07655 PF01863 Protein of unknown function DUF45 R615_07660 PF01522 Polysaccharide deacetylase R615_07665 PF00226 DnaJ domain R615_07665 PF12339 R615_07665 R615_07670 PF09656 R615_07670 R615_07675 PF01272 Transcription elongation factor, GreA/GreB, C-term R615_07675 PF03449 Transcription elongation factor, N-terminal R615_07685 PF01171 PP-loop family R615_07695 PF00027 Cyclic nucleotide-binding domain R615_07695 PF13545 Crp-like helix-turn-helix domain R615_07700 PF13386 R615_07700 R615_07705 PF03597 R615_07705 R615_07710 PF00122 E1-E2 ATPase R615_07710 PF00403 Heavy-metal-associated domain R615_07710 PF00702 haloacid dehalogenase-like hydrolase R615_07710 PF12156 R615_07710 R615_07715 PF05751 R615_07715 R615_07720 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase R615_07720 PF12801 R615_07720 R615_07720 PF13746 4Fe-4S dicluster domain R615_07725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_07725 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP R615_07730 PF05545 R615_07730 R615_07735 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO R615_07740 PF00115 Cytochrome C and Quinol oxidase polypeptide I R615_07745 PF12697 Alpha/beta hydrolase family R615_07750 PF03992 Antibiotic biosynthesis monooxygenase R615_07755 PF13280 R615_07755 R615_07775 PF11325 R615_07775 R615_07780 PF00106 short chain dehydrogenase R615_07785 PF00109 Beta-ketoacyl synthase, N-terminal domain R615_07785 PF02801 Beta-ketoacyl synthase, C-terminal domain R615_07790 PF12833 Helix-turn-helix domain R615_07795 PF00989 PAS fold R615_07795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_07795 PF07568 R615_07795 R615_07795 PF08448 PAS fold R615_07795 PF13426 PAS domain R615_07800 PF00072 Response regulator receiver domain R615_07800 PF00563 EAL domain R615_07800 PF00990 GGDEF domain R615_07800 PF13426 PAS domain R615_07805 PF04261 Dyp-type peroxidase family R615_07810 PF00919 Uncharacterized protein family UPF0004 R615_07810 PF04055 Radical SAM superfamily R615_07815 PF00072 Response regulator receiver domain R615_07815 PF00990 GGDEF domain R615_07820 PF00072 Response regulator receiver domain R615_07820 PF00512 His Kinase A (phospho-acceptor) domain R615_07820 PF01590 GAF domain R615_07820 PF01627 Hpt domain R615_07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_07820 PF08447 PAS fold R615_07820 PF13426 PAS domain R615_07825 PF13511 R615_07825 R615_07835 PF08443 RimK-like ATP-grasp domain R615_07835 PF14401 R615_07835 R615_07845 PF00583 Acetyltransferase (GNAT) family R615_07845 PF11814 R615_07845 R615_07855 PF04339 R615_07855 R615_07860 PF01230 HIT domain R615_07865 PF00753 Metallo-beta-lactamase superfamily R615_07865 PF16123 R615_07865 R615_07870 PF00216 Bacterial DNA-binding protein R615_07875 PF00106 short chain dehydrogenase R615_07880 PF00152 tRNA synthetases class II (D, K and N) R615_07880 PF01336 OB-fold nucleic acid binding domain R615_07880 PF02938 GAD domain R615_07900 PF01553 Acyltransferase R615_07900 PF05977 Transmembrane secretion effector R615_07915 PF00106 short chain dehydrogenase R615_07920 PF01738 Dienelactone hydrolase family R615_07925 PF00330 Aconitase family (aconitate hydratase) R615_07925 PF00694 Aconitase C-terminal domain R615_07935 PF08843 Nucleotidyl transferase of unknown function (DUF1814) R615_07945 PF14730 Domain of unknown function (DUF4468) with TBP-like fold R615_07965 PF00330 Aconitase family (aconitate hydratase) R615_07965 PF06434 Aconitate hydratase 2 N-terminus R615_07965 PF11791 Aconitate B N-terminal domain R615_07975 PF00384 Molybdopterin oxidoreductase R615_07975 PF01568 Molydopterin dinucleotide binding domain R615_07975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain R615_07980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain R615_07980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain R615_07980 PF11890 Domain of unknown function (DUF3410) R615_07990 PF00155 Aminotransferase class I and II R615_07995 PF01641 SelR domain R615_08000 PF00255 Glutathione peroxidase R615_08005 PF01047 MarR family R615_08040 PF00005 ABC transporter R615_08045 PF01061 R615_08045 R615_08050 PF14489 QueF-like protein R615_08050 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term R615_08055 PF00211 Adenylate and Guanylate cyclase catalytic domain R615_08055 PF05230 R615_08055 R615_08060 PF00881 Nitroreductase family R615_08070 PF00072 Response regulator receiver domain R615_08070 PF00512 His Kinase A (phospho-acceptor) domain R615_08070 PF00989 PAS fold R615_08070 PF01627 Hpt domain R615_08070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_08070 PF03924 CHASE domain R615_08070 PF08447 PAS fold R615_08070 PF13426 PAS domain R615_08075 PF12625 R615_08075 R615_08075 PF12833 Helix-turn-helix domain R615_08080 PF03583 Secretory lipase R615_08090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_08090 PF13682 Chemoreceptor zinc-binding domain R615_08095 PF00749 tRNA synthetases class I (E and Q), catalytic domain R615_08110 PF08282 haloacid dehalogenase-like hydrolase R615_08115 PF01370 NAD dependent epimerase/dehydratase family R615_08120 PF02348 Cytidylyltransferase R615_08125 PF11911 R615_08125 R615_08130 PF13673 Acetyltransferase (GNAT) domain R615_08135 PF08007 Cupin superfamily protein R615_08140 PF00206 Lyase R615_08140 PF08328 Adenylosuccinate lyase C-terminal R615_08145 PF09335 R615_08145 R615_08150 PF01242 6-pyruvoyl tetrahydropterin synthase R615_08165 PF01274 Malate synthase R615_08180 PF13401 AAA domain R615_08185 PF16537 R615_08185 R615_08190 PF00270 DEAD/DEAH box helicase R615_08190 PF13307 Helicase C-terminal domain R615_08195 PF12697 Alpha/beta hydrolase family R615_08205 PF02687 R615_08205 R615_08205 PF12704 MacB-like periplasmic core domain R615_08210 PF00005 ABC transporter R615_08215 PF09835 R615_08215 R615_08220 PF00753 Metallo-beta-lactamase superfamily R615_08220 PF03772 R615_08220 R615_08220 PF13567 R615_08220 R615_08225 PF01618 R615_08225 R615_08230 PF02472 Biopolymer transport protein ExbD/TolR R615_08235 PF00005 ABC transporter R615_08235 PF00664 ABC transporter transmembrane region R615_08240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase R615_08245 PF03966 Trm112p-like protein R615_08250 PF01451 Low molecular weight phosphotyrosine protein phosphatase R615_08255 PF01565 FAD binding domain R615_08255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain R615_08260 PF00149 Calcineurin-like phosphoesterase R615_08265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD R615_08270 PF00749 tRNA synthetases class I (E and Q), catalytic domain R615_08270 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain R615_08275 PF01406 tRNA synthetases class I (C) catalytic domain R615_08275 PF09190 DALR domain R615_08285 PF13271 R615_08285 R615_08295 PF03458 R615_08295 R615_08300 PF01612 3'-5' exonuclease R615_08305 PF03543 Yersinia/Haemophilus virulence surface antigen R615_08310 PF01841 Transglutaminase-like superfamily R615_08310 PF08379 R615_08310 R615_08315 PF07995 Glucose / Sorbosone dehydrogenase R615_08320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain R615_08320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain R615_08345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase R615_08345 PF05697 Bacterial trigger factor protein (TF) R615_08345 PF05698 Bacterial trigger factor protein (TF) C-terminus R615_08350 PF00574 Clp protease R615_08355 PF06689 ClpX C4-type zinc finger R615_08355 PF07724 AAA domain (Cdc48 subfamily) R615_08355 PF10431 C-terminal, D2-small domain, of ClpB protein R615_08360 PF00004 ATPase family associated with various cellular activities (AAA) R615_08360 PF02190 ATP-dependent protease La (LON) domain R615_08360 PF05362 Lon protease (S16) C-terminal proteolytic domain R615_08365 PF00216 Bacterial DNA-binding protein R615_08375 PF13145 PPIC-type PPIASE domain R615_08375 PF13616 PPIC-type PPIASE domain R615_08375 PF13624 SurA N-terminal domain R615_08380 PF13561 Enoyl-(Acyl carrier protein) reductase R615_08385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle R615_08390 PF01464 Transglycosylase SLT domain R615_08390 PF01476 LysM domain R615_08395 PF08241 Methyltransferase domain R615_08400 PF00075 RNase H R615_08405 PF00929 Exonuclease R615_08410 PF06450 R615_08410 R615_08425 PF02036 SCP-2 sterol transfer family R615_08430 PF01343 Peptidase family S49 R615_08430 PF08496 R615_08430 R615_08435 PF00107 Zinc-binding dehydrogenase R615_08435 PF08240 Alcohol dehydrogenase GroES-like domain R615_08440 PF00999 Sodium/hydrogen exchanger family R615_08445 PF06073 R615_08445 R615_08450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain R615_08450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain R615_08455 PF03009 Glycerophosphoryl diester phosphodiesterase family R615_08460 PF01554 MatE R615_08465 PF00809 Pterin binding enzyme R615_08465 PF02310 B12 binding domain R615_08465 PF02574 Homocysteine S-methyltransferase R615_08465 PF02607 B12 binding domain R615_08465 PF02965 Vitamin B12 dependent methionine synthase, activation domain R615_08470 PF01106 NifU-like domain R615_08470 PF01521 Iron-sulphur cluster biosynthesis R615_08475 PF07238 PilZ domain R615_08480 PF00072 Response regulator receiver domain R615_08480 PF07228 Stage II sporulation protein E (SpoIIE) R615_08490 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus R615_08490 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus R615_08495 PF14333 R615_08495 R615_08500 PF00300 Histidine phosphatase superfamily (branch 1) R615_08505 PF12697 Alpha/beta hydrolase family R615_08510 PF00561 alpha/beta hydrolase fold R615_08515 PF07314 R615_08515 R615_08520 PF00849 RNA pseudouridylate synthase R615_08525 PF01136 R615_08525 R615_08525 PF16325 R615_08525 R615_08540 PF05175 Methyltransferase small domain R615_08550 PF03547 R615_08550 R615_08555 PF13271 R615_08555 R615_08560 PF01022 Bacterial regulatory protein, arsR family R615_08565 PF02424 ApbE family R615_08570 PF04400 R615_08570 R615_08575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain R615_08575 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_08585 PF05099 Tellurite resistance protein TerB R615_08590 PF00923 Transaldolase R615_08595 PF00581 Rhodanese-like domain R615_08600 PF01207 Dihydrouridine synthase (Dus) R615_08605 PF04356 Protein of unknown function (DUF489) R615_08610 PF03054 tRNA methyl transferase R615_08615 PF00293 NUDIX domain R615_08620 PF00849 RNA pseudouridylate synthase R615_08625 PF03971 Monomeric isocitrate dehydrogenase R615_08630 PF00313 'Cold-shock' DNA-binding domain R615_08635 PF02617 ATP-dependent Clp protease adaptor protein ClpS R615_08640 PF00004 ATPase family associated with various cellular activities (AAA) R615_08640 PF02861 Clp amino terminal domain R615_08640 PF07724 AAA domain (Cdc48 subfamily) R615_08640 PF10431 C-terminal, D2-small domain, of ClpB protein R615_08645 PF01176 Translation initiation factor 1A / IF-1 R615_08650 PF04376 R615_08650 R615_08650 PF04377 R615_08650 R615_08655 PF03588 Leucyl/phenylalanyl-tRNA protein transferase R615_08660 PF01580 FtsK/SpoIIIE family R615_08660 PF09397 Ftsk gamma domain R615_08660 PF13491 R615_08660 R615_08665 PF03548 Outer membrane lipoprotein carrier protein LolA R615_08670 PF00004 ATPase family associated with various cellular activities (AAA) R615_08670 PF12002 MgsA AAA+ ATPase C terminal R615_08670 PF16193 R615_08670 R615_08675 PF02537 R615_08675 R615_08680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) R615_08680 PF02403 Seryl-tRNA synthetase N-terminal domain R615_08685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases R615_08685 PF10414 Sirohaem synthase dimerisation region R615_08685 PF13241 Putative NAD(P)-binding R615_08685 PF14824 Sirohaem biosynthesis protein central R615_08695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_08700 PF02885 Glycosyl transferase family, helical bundle domain R615_08705 PF04358 DsrC like protein R615_08710 PF04077 DsrH like protein R615_08715 PF02635 DsrE/DsrF-like family R615_08720 PF02635 DsrE/DsrF-like family R615_08730 PF00850 Histone deacetylase domain R615_08735 PF00583 Acetyltransferase (GNAT) family R615_08735 PF13380 CoA binding domain R615_08735 PF13549 ATP-grasp domain R615_08735 PF13607 Succinyl-CoA ligase like flavodoxin domain R615_08740 PF00072 Response regulator receiver domain R615_08740 PF00196 Bacterial regulatory proteins, luxR family R615_08745 PF01541 GIY-YIG catalytic domain R615_08745 PF02151 UvrB/uvrC motif R615_08745 PF08459 UvrC Helix-hairpin-helix N-terminal R615_08745 PF14520 Helix-hairpin-helix domain R615_08750 PF01066 CDP-alcohol phosphatidyltransferase R615_08770 PF04055 Radical SAM superfamily R615_08775 PF06938 Protein of unknown function (DUF1285) R615_08785 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase R615_08785 PF13450 NAD(P)-binding Rossmann-like domain R615_08790 PF01012 Electron transfer flavoprotein domain R615_08795 PF00766 Electron transfer flavoprotein FAD-binding domain R615_08795 PF01012 Electron transfer flavoprotein domain R615_08800 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain R615_08800 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain R615_08800 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain R615_08805 PF00437 Type II/IV secretion system protein R615_08810 PF00482 Type II secretion system (T2SS), protein F R615_08815 PF07963 Prokaryotic N-terminal methylation motif R615_08815 PF08334 Type II secretion system (T2SS), protein G R615_08820 PF07963 Prokaryotic N-terminal methylation motif R615_08825 PF02501 Type II secretion system (T2SS), protein I R615_08825 PF07963 Prokaryotic N-terminal methylation motif R615_08830 PF07963 Prokaryotic N-terminal methylation motif R615_08830 PF11612 Type II secretion system (T2SS), protein J R615_08835 PF03934 Type II secretion system (T2SS), protein K R615_08840 PF05134 Type II secretion system (T2SS), protein L R615_08840 PF12693 GspL periplasmic domain R615_08845 PF04612 Type II secretion system (T2SS), protein M R615_08850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain R615_08850 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_08855 PF00176 SNF2 family N-terminal domain R615_08855 PF00271 Helicase conserved C-terminal domain R615_08855 PF12137 RNA polymerase recycling family C-terminal R615_08860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain R615_08860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I R615_08860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II R615_08860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III R615_08865 PF03976 Polyphosphate kinase 2 (PPK2) R615_08870 PF01526 R615_08870 R615_08875 PF00355 Rieske [2Fe-2S] domain R615_08875 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal R615_08880 PF00343 Carbohydrate phosphorylase R615_08890 PF04191 Phospholipid methyltransferase R615_08895 PF11666 R615_08895 R615_08905 PF00543 Nitrogen regulatory protein P-II R615_08910 PF13473 Cupredoxin-like domain R615_08915 PF00122 E1-E2 ATPase R615_08915 PF00403 Heavy-metal-associated domain R615_08915 PF00702 haloacid dehalogenase-like hydrolase R615_08920 PF09278 MerR, DNA binding R615_08955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_08965 PF05275 R615_08965 R615_08970 PF00394 Multicopper oxidase R615_08970 PF07731 Multicopper oxidase R615_08970 PF07732 Multicopper oxidase R615_08975 PF00072 Response regulator receiver domain R615_08975 PF00486 Transcriptional regulatory protein, C terminal R615_08980 PF00512 His Kinase A (phospho-acceptor) domain R615_08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_08985 PF13520 Amino acid permease R615_09005 PF00873 AcrB/AcrD/AcrF family R615_09010 PF11604 Copper binding periplasmic protein CusF R615_09010 PF16576 R615_09010 R615_09015 PF02321 Outer membrane efflux protein R615_09020 PF04214 R615_09020 R615_09030 PF13560 Helix-turn-helix domain R615_09045 PF00330 Aconitase family (aconitate hydratase) R615_09045 PF00694 Aconitase C-terminal domain R615_09055 PF02321 Outer membrane efflux protein R615_09060 PF16576 R615_09060 R615_09065 PF00873 AcrB/AcrD/AcrF family R615_09070 PF00231 ATP synthase R615_09080 PF13173 AAA domain R615_09080 PF13635 R615_09080 R615_09085 PF13411 MerR HTH family regulatory protein R615_09090 PF02411 R615_09090 R615_09095 PF00403 Heavy-metal-associated domain R615_09100 PF03239 R615_09100 R615_09100 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_09105 PF00376 MerR family regulatory protein R615_09105 PF09278 MerR, DNA binding R615_09110 PF01545 Cation efflux family R615_09120 PF02321 Outer membrane efflux protein R615_09125 PF16576 R615_09125 R615_09130 PF00873 AcrB/AcrD/AcrF family R615_09140 PF01545 Cation efflux family R615_09145 PF02694 R615_09145 R615_09150 PF04116 R615_09150 R615_09155 PF01545 Cation efflux family R615_09160 PF02583 Metal-sensitive transcriptional repressor R615_09170 PF13561 Enoyl-(Acyl carrier protein) reductase R615_09180 PF02568 Thiamine biosynthesis protein (ThiI) R615_09180 PF02926 THUMP domain R615_09185 PF11730 R615_09185 R615_09190 PF13417 Glutathione S-transferase, N-terminal domain R615_09200 PF03372 Endonuclease/Exonuclease/phosphatase family R615_09205 PF02412 Thrombospondin type 3 repeat R615_09215 PF03544 Gram-negative bacterial TonB protein C-terminal R615_09220 PF02472 Biopolymer transport protein ExbD/TolR R615_09225 PF01618 R615_09225 R615_09230 PF01618 R615_09230 R615_09235 PF11932 R615_09235 R615_09240 PF00675 Insulinase (Peptidase family M16) R615_09240 PF05193 Peptidase M16 inactive domain R615_09240 PF08367 Peptidase M16C associated R615_09245 PF00266 Aminotransferase class-V R615_09250 PF07624 R615_09250 R615_09250 PF07626 R615_09250 R615_09250 PF07627 R615_09250 R615_09250 PF07631 R615_09250 R615_09250 PF07637 R615_09250 R615_09255 PF07586 R615_09255 R615_09260 PF00023 Ankyrin repeat R615_09260 PF12796 Ankyrin repeats (3 copies) R615_09265 PF01322 Cytochrome C' R615_09270 PF01292 Prokaryotic cytochrome b561 R615_09275 PF07238 PilZ domain R615_09280 PF13177 DNA polymerase III, delta subunit R615_09285 PF02223 Thymidylate kinase R615_09290 PF02618 YceG-like family R615_09295 PF01063 Aminotransferase class IV R615_09300 PF00550 Phosphopantetheine attachment site R615_09305 PF13561 Enoyl-(Acyl carrier protein) reductase R615_09310 PF00698 Acyl transferase domain R615_09315 PF02504 Fatty acid synthesis protein R615_09320 PF01783 Ribosomal L32p protein family R615_09325 PF02620 R615_09325 R615_09330 PF01343 Peptidase family S49 R615_09335 PF13419 Haloacid dehalogenase-like hydrolase R615_09340 PF00849 RNA pseudouridylate synthase R615_09340 PF01479 S4 domain R615_09345 PF00575 S1 RNA binding domain R615_09345 PF10150 Ribonuclease E/G family R615_09350 PF04303 PrpF protein R615_09355 PF00990 GGDEF domain R615_09360 PF00330 Aconitase family (aconitate hydratase) R615_09360 PF00694 Aconitase C-terminal domain R615_09365 PF00285 Citrate synthase R615_09370 PF13714 Phosphoenolpyruvate phosphomutase R615_09375 PF00392 Bacterial regulatory proteins, gntR family R615_09375 PF07729 FCD domain R615_09380 PF13450 NAD(P)-binding Rossmann-like domain R615_09385 PF03737 Demethylmenaquinone methyltransferase R615_09390 PF01370 NAD dependent epimerase/dehydratase family R615_09395 PF00561 alpha/beta hydrolase fold R615_09400 PF00391 PEP-utilising enzyme, mobile domain R615_09400 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain R615_09400 PF02896 PEP-utilising enzyme, TIM barrel domain R615_09405 PF03618 R615_09405 R615_09410 PF12697 Alpha/beta hydrolase family R615_09420 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) R615_09430 PF03412 Peptidase C39 family R615_09440 PF00425 chorismate binding enzyme R615_09445 PF00702 haloacid dehalogenase-like hydrolase R615_09450 PF01507 Phosphoadenosine phosphosulfate reductase family R615_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_09455 PF03466 LysR substrate binding domain R615_09460 PF01925 R615_09460 R615_09465 PF12728 Helix-turn-helix domain R615_09470 PF00793 DAHP synthetase I family R615_09470 PF14549 DNA-binding transcriptional regulator Cro R615_09475 PF04333 R615_09475 R615_09480 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) R615_09485 PF05114 Protein of unknown function (DUF692) R615_09495 PF00270 DEAD/DEAH box helicase R615_09495 PF00271 Helicase conserved C-terminal domain R615_09495 PF04408 Helicase associated domain (HA2) R615_09495 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold R615_09495 PF11898 R615_09495 R615_09500 PF00501 AMP-binding enzyme R615_09500 PF13193 AMP-binding enzyme C-terminal domain R615_09505 PF01575 MaoC like domain R615_09510 PF16031 R615_09510 R615_09515 PF02472 Biopolymer transport protein ExbD/TolR R615_09520 PF02472 Biopolymer transport protein ExbD/TolR R615_09525 PF01618 R615_09525 R615_09535 PF13414 TPR repeat R615_09535 PF13432 Tetratricopeptide repeat R615_09540 PF13174 Tetratricopeptide repeat R615_09540 PF13432 Tetratricopeptide repeat R615_09570 PF05762 VWA domain containing CoxE-like protein R615_09575 PF00004 ATPase family associated with various cellular activities (AAA) R615_09580 PF00092 von Willebrand factor type A domain R615_09595 PF03692 R615_09595 R615_09600 PF05166 YcgL domain R615_09605 PF00570 HRDC domain R615_09605 PF01612 3'-5' exonuclease R615_09610 PF02132 RecR protein R615_09610 PF13662 Toprim domain R615_09615 PF02575 YbaB/EbfC DNA-binding family R615_09625 PF01402 Ribbon-helix-helix protein, copG family R615_09635 PF00072 Response regulator receiver domain R615_09635 PF00512 His Kinase A (phospho-acceptor) domain R615_09635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_09640 PF16036 R615_09640 R615_09645 PF14300 Domain of unknown function (DUF4375) R615_09650 PF12697 Alpha/beta hydrolase family R615_09660 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) R615_09665 PF03061 Thioesterase superfamily R615_09670 PF01367 5'-3' exonuclease, C-terminal SAM fold R615_09670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain R615_09675 PF00005 ABC transporter R615_09675 PF00664 ABC transporter transmembrane region R615_09680 PF00246 Zinc carboxypeptidase R615_09685 PF09694 R615_09685 R615_09690 PF12697 Alpha/beta hydrolase family R615_09700 PF00270 DEAD/DEAH box helicase R615_09700 PF00271 Helicase conserved C-terminal domain R615_09705 PF04315 R615_09705 R615_09710 PF01554 MatE R615_09715 PF09335 R615_09715 R615_09720 PF07722 Peptidase C26 R615_09725 PF12224 R615_09725 R615_09730 PF00171 Aldehyde dehydrogenase family R615_09735 PF12847 Methyltransferase domain R615_09745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_09755 PF00462 Glutaredoxin R615_09760 PF01243 Pyridoxamine 5'-phosphate oxidase R615_09765 PF03473 MOSC domain R615_09770 PF00248 Aldo/keto reductase family R615_09775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_09775 PF17200 R615_09775 R615_09780 PF00085 Thioredoxin R615_09790 PF01841 Transglutaminase-like superfamily R615_09790 PF11992 R615_09790 R615_09795 PF01882 R615_09795 R615_09800 PF07726 ATPase family associated with various cellular activities (AAA) R615_09805 PF01053 Cys/Met metabolism PLP-dependent enzyme R615_09810 PF00156 Phosphoribosyl transferase domain R615_09810 PF13522 Glutamine amidotransferase domain R615_09815 PF02674 R615_09815 R615_09820 PF05036 Sporulation related domain R615_09825 PF08245 Mur ligase middle domain R615_09830 PF00290 Tryptophan synthase alpha chain R615_09835 PF00291 Pyridoxal-phosphate dependent enzyme R615_09840 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase R615_09845 PF12625 R615_09845 R615_09845 PF12833 Helix-turn-helix domain R615_09855 PF01416 tRNA pseudouridine synthase R615_09865 PF01118 Semialdehyde dehydrogenase, NAD binding domain R615_09865 PF02774 Semialdehyde dehydrogenase, dimerisation domain R615_09870 PF00180 Isocitrate/isopropylmalate dehydrogenase R615_09875 PF00694 Aconitase C-terminal domain R615_09880 PF00330 Aconitase family (aconitate hydratase) R615_09885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_09885 PF03466 LysR substrate binding domain R615_09890 PF00582 Universal stress protein family R615_09895 PF01515 Phosphate acetyl/butaryl transferase R615_09900 PF01546 Peptidase family M20/M25/M40 R615_09900 PF07687 Peptidase dimerisation domain R615_09905 PF00202 Aminotransferase class-III R615_09910 PF00557 Metallopeptidase family M24 R615_09910 PF01321 Creatinase/Prolidase N-terminal domain R615_09915 PF00171 Aldehyde dehydrogenase family R615_09925 PF00501 AMP-binding enzyme R615_09925 PF13193 AMP-binding enzyme C-terminal domain R615_09925 PF16177 R615_09925 R615_09930 PF06945 R615_09930 R615_09935 PF00582 Universal stress protein family R615_09945 PF00665 Integrase core domain R615_09945 PF13276 R615_09945 R615_09950 PF01527 Transposase R615_09960 PF01545 Cation efflux family R615_09965 PF04326 Divergent AAA domain R615_09980 PF00549 CoA-ligase R615_09980 PF02629 CoA binding domain R615_09985 PF00549 CoA-ligase R615_09985 PF08442 ATP-grasp domain R615_09990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain R615_09990 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_09995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) R615_09995 PF00364 Biotin-requiring enzyme R615_09995 PF02817 e3 binding domain R615_10000 PF00676 Dehydrogenase E1 component R615_10000 PF02779 Transketolase, pyrimidine binding domain R615_10000 PF16078 R615_10000 R615_10000 PF16870 R615_10000 R615_10005 PF13085 2Fe-2S iron-sulfur cluster binding domain R615_10005 PF13534 4Fe-4S dicluster domain R615_10010 PF00890 FAD binding domain R615_10010 PF02910 Fumarate reductase flavoprotein C-term R615_10015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit R615_10020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit R615_10025 PF00285 Citrate synthase R615_10030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase R615_10030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase R615_10040 PF00072 Response regulator receiver domain R615_10040 PF01584 CheW-like domain R615_10045 PF00563 EAL domain R615_10045 PF08668 HDOD domain R615_10050 PF01266 FAD dependent oxidoreductase R615_10050 PF16901 R615_10050 R615_10060 PF01075 Glycosyltransferase family 9 (heptosyltransferase) R615_10065 PF03706 R615_10065 R615_10070 PF00535 Glycosyl transferase family 2 R615_10075 PF13231 R615_10075 R615_10080 PF01569 PAP2 superfamily R615_10085 PF00109 Beta-ketoacyl synthase, N-terminal domain R615_10085 PF02801 Beta-ketoacyl synthase, C-terminal domain R615_10090 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain R615_10090 PF01039 Carboxyl transferase domain R615_10090 PF02785 Biotin carboxylase C-terminal domain R615_10090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain R615_10095 PF05359 R615_10095 R615_10100 PF13538 UvrD-like helicase C-terminal domain R615_10100 PF13604 AAA domain R615_10105 PF00580 UvrD/REP helicase N-terminal domain R615_10105 PF12705 PD-(D/E)XK nuclease superfamily R615_10105 PF13361 UvrD-like helicase C-terminal domain R615_10110 PF04257 Exodeoxyribonuclease V, gamma subunit R615_10135 PF08719 Domain of unknown function (DUF1768) R615_10140 PF10604 Polyketide cyclase / dehydrase and lipid transport R615_10145 PF00583 Acetyltransferase (GNAT) family R615_10150 PF00120 Glutamine synthetase, catalytic domain R615_10150 PF12437 Glutamine synthetase type III N terminal R615_10155 PF01262 Alanine dehydrogenase/PNT, C-terminal domain R615_10155 PF05222 Alanine dehydrogenase/PNT, N-terminal domain R615_10165 PF00593 TonB dependent receptor R615_10165 PF07715 TonB-dependent Receptor Plug Domain R615_10175 PF03929 R615_10175 R615_10180 PF11804 R615_10180 R615_10190 PF04055 Radical SAM superfamily R615_10190 PF08497 R615_10190 R615_10190 PF11842 R615_10190 R615_10195 PF00072 Response regulator receiver domain R615_10195 PF03861 ANTAR domain R615_10200 PF13379 NMT1-like family R615_10205 PF13379 NMT1-like family R615_10210 PF00528 Binding-protein-dependent transport system inner membrane component R615_10215 PF00005 ABC transporter R615_10225 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_10240 PF07690 Major Facilitator Superfamily R615_10245 PF13806 Rieske-like [2Fe-2S] domain R615_10250 PF01077 Nitrite and sulphite reductase 4Fe-4S domain R615_10250 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain R615_10250 PF04324 BFD-like [2Fe-2S] binding domain R615_10250 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_10255 PF00384 Molybdopterin oxidoreductase R615_10255 PF01568 Molydopterin dinucleotide binding domain R615_10255 PF04324 BFD-like [2Fe-2S] binding domain R615_10255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain R615_10260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases R615_10265 PF13673 Acetyltransferase (GNAT) domain R615_10270 PF01402 Ribbon-helix-helix protein, copG family R615_10275 PF05016 Plasmid stabilisation system protein R615_10280 PF05016 Plasmid stabilisation system protein R615_10285 PF03693 Uncharacterised protein family (UPF0156) R615_10325 PF03352 Methyladenine glycosylase R615_10330 PF06080 R615_10330 R615_10335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) R615_10335 PF03129 Anticodon binding domain R615_10335 PF04073 Aminoacyl-tRNA editing domain R615_10340 PF01464 Transglycosylase SLT domain R615_10345 PF00857 Isochorismatase family R615_10350 PF00990 GGDEF domain R615_10355 PF03480 Bacterial extracellular solute-binding protein, family 7 R615_10360 PF02233 NAD(P) transhydrogenase beta subunit R615_10365 PF12769 Domain of unknown function (DUF3814) R615_10370 PF01262 Alanine dehydrogenase/PNT, C-terminal domain R615_10370 PF05222 Alanine dehydrogenase/PNT, N-terminal domain R615_10375 PF06039 R615_10375 R615_10385 PF00196 Bacterial regulatory proteins, luxR family R615_10390 PF00487 R615_10390 R615_10395 PF00301 Rubredoxin R615_10400 PF00171 Aldehyde dehydrogenase family R615_10405 PF00732 GMC oxidoreductase R615_10405 PF05199 GMC oxidoreductase R615_10410 PF00849 RNA pseudouridylate synthase R615_10415 PF01152 Bacterial-like globin R615_10420 PF13555 P-loop containing region of AAA domain R615_10420 PF13558 Putative exonuclease SbcCD, C subunit R615_10425 PF13835 R615_10425 R615_10440 PF00989 PAS fold R615_10440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_10440 PF07695 R615_10440 R615_10440 PF07696 7TMR-DISM extracellular 2 R615_10445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family R615_10445 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_10450 PF01883 Domain of unknown function DUF59 R615_10450 PF10609 ParA/MinD ATPase like R615_10455 PF02386 Cation transport protein R615_10465 PF00005 ABC transporter R615_10465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region R615_10470 PF00528 Binding-protein-dependent transport system inner membrane component R615_10475 PF00528 Binding-protein-dependent transport system inner membrane component R615_10480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle R615_10485 PF00122 E1-E2 ATPase R615_10485 PF00689 Cation transporting ATPase, C-terminus R615_10485 PF00690 Cation transporter/ATPase, N-terminus R615_10485 PF08282 haloacid dehalogenase-like hydrolase R615_10485 PF13246 Putative hydrolase of sodium-potassium ATPase alpha subunit R615_10490 PF02508 R615_10490 R615_10495 PF04060 Putative Fe-S cluster R615_10495 PF14697 4Fe-4S dicluster domain R615_10500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit R615_10500 PF10531 SLBB domain R615_10500 PF13237 4Fe-4S dicluster domain R615_10500 PF13375 RnfC Barrel sandwich hybrid domain R615_10505 PF03116 R615_10505 R615_10510 PF04205 FMN-binding domain R615_10515 PF02508 R615_10515 R615_10525 PF00581 Rhodanese-like domain R615_10530 PF04542 Sigma-70 region 2 R615_10530 PF08281 Sigma-70, region 4 R615_10535 PF10099 R615_10535 R615_10540 PF13855 Leucine rich repeat R615_10555 PF00440 Bacterial regulatory proteins, tetR family R615_10560 PF00578 AhpC/TSA family R615_10565 PF03692 R615_10565 R615_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_10570 PF02743 Cache domain R615_10575 PF01527 Transposase R615_10580 PF00665 Integrase core domain R615_10590 PF13761 R615_10590 R615_10600 PF05717 R615_10600 R615_10620 PF00665 Integrase core domain R615_10620 PF13276 R615_10620 R615_10625 PF01527 Transposase R615_10630 PF00211 Adenylate and Guanylate cyclase catalytic domain R615_10640 PF01425 Amidase R615_10645 PF12146 Putative lysophospholipase R615_10650 PF00440 Bacterial regulatory proteins, tetR family R615_10655 PF00849 RNA pseudouridylate synthase R615_10655 PF01479 S4 domain R615_10660 PF01717 Cobalamin-independent synthase, Catalytic domain R615_10660 PF08267 Cobalamin-independent synthase, N-terminal domain R615_10665 PF12915 R615_10665 R615_10675 PF13411 MerR HTH family regulatory protein R615_10685 PF11747 R615_10685 R615_10695 PF01370 NAD dependent epimerase/dehydratase family R615_10695 PF02222 ATP-grasp domain R615_10700 PF06945 R615_10700 R615_10705 PF00132 Bacterial transferase hexapeptide (six repeats) R615_10710 PF00293 NUDIX domain R615_10715 PF11333 R615_10715 R615_10720 PF00293 NUDIX domain R615_10720 PF14803 Nudix N-terminal R615_10730 PF03692 R615_10730 R615_10755 PF00873 AcrB/AcrD/AcrF family R615_10760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_10765 PF00873 AcrB/AcrD/AcrF family R615_10770 PF16576 R615_10770 R615_10775 PF02321 Outer membrane efflux protein R615_10785 PF17131 R615_10785 R615_10790 PF03176 MMPL family R615_10795 PF00440 Bacterial regulatory proteins, tetR family R615_10800 PF13690 Chemotaxis phosphatase CheX R615_10805 PF00156 Phosphoribosyl transferase domain R615_10810 PF03843 R615_10810 R615_10815 PF01546 Peptidase family M20/M25/M40 R615_10815 PF07687 Peptidase dimerisation domain R615_10820 PF13649 Methyltransferase domain R615_10825 PF04364 DNA polymerase III chi subunit, HolC R615_10835 PF00133 tRNA synthetases class I (I, L, M and V) R615_10835 PF08264 Anticodon-binding domain of tRNA R615_10835 PF10458 Valyl tRNA synthetase tRNA binding arm R615_10840 PF05973 R615_10840 R615_10845 PF13744 Helix-turn-helix domain R615_10865 PF13476 AAA domain R615_10880 PF08378 R615_10880 R615_10890 PF12973 ChrR Cupin-like domain R615_10900 PF07308 R615_10900 R615_10905 PF02412 Thrombospondin type 3 repeat R615_10915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain R615_10915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain R615_10920 PF10458 Valyl tRNA synthetase tRNA binding arm R615_10935 PF01027 Inhibitor of apoptosis-promoting Bax1 R615_10940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_10940 PF03466 LysR substrate binding domain R615_10950 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ R615_10955 PF02355 Protein export membrane protein R615_10955 PF07549 SecD/SecF GG Motif R615_10960 PF02355 Protein export membrane protein R615_10960 PF07549 SecD/SecF GG Motif R615_10960 PF13721 SecD export protein N-terminal TM region R615_10965 PF02699 Preprotein translocase subunit R615_10970 PF01702 Queuine tRNA-ribosyltransferase R615_10975 PF02547 Queuosine biosynthesis protein R615_10995 PF00990 GGDEF domain R615_10995 PF07695 R615_10995 R615_10995 PF07696 7TMR-DISM extracellular 2 R615_11000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III R615_11005 PF07394 R615_11005 R615_11010 PF00578 AhpC/TSA family R615_11015 PF14086 R615_11015 R615_11020 PF12094 R615_11020 R615_11025 PF02424 ApbE family R615_11030 PF00106 short chain dehydrogenase R615_11035 PF09694 R615_11035 R615_11040 PF03969 AFG1-like ATPase R615_11045 PF00561 alpha/beta hydrolase fold R615_11050 PF01507 Phosphoadenosine phosphosulfate reductase family R615_11055 PF00009 Elongation factor Tu GTP binding domain R615_11065 PF13505 Outer membrane protein beta-barrel domain R615_11070 PF13671 AAA domain R615_11075 PF11903 R615_11075 R615_11080 PF03881 Fructosamine kinase R615_11085 PF01243 Pyridoxamine 5'-phosphate oxidase R615_11085 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region R615_11090 PF06271 R615_11090 R615_11095 PF03739 R615_11095 R615_11100 PF03739 R615_11100 R615_11110 PF00883 Cytosol aminopeptidase family, catalytic domain R615_11110 PF02789 Cytosol aminopeptidase family, N-terminal domain R615_11115 PF00881 Nitroreductase family R615_11120 PF00497 Bacterial extracellular solute-binding proteins, family 3 R615_11125 PF00691 OmpA family R615_11130 PF13505 Outer membrane protein beta-barrel domain R615_11135 PF17164 R615_11135 R615_11145 PF00117 Glutamine amidotransferase class-I R615_11145 PF00958 GMP synthase C terminal domain R615_11145 PF02540 NAD synthase R615_11150 PF00478 IMP dehydrogenase / GMP reductase domain R615_11150 PF00571 CBS domain R615_11155 PF12146 Putative lysophospholipase R615_11160 PF13387 R615_11160 R615_11165 PF11220 R615_11165 R615_11170 PF02601 R615_11170 R615_11170 PF13742 R615_11170 R615_11175 PF01551 Peptidase family M23 R615_11185 PF13279 Thioesterase-like superfamily R615_11190 PF13622 Thioesterase-like superfamily R615_11195 PF05958 tRNA (Uracil-5-)-methyltransferase R615_11200 PF00270 DEAD/DEAH box helicase R615_11200 PF00271 Helicase conserved C-terminal domain R615_11200 PF03880 DbpA RNA binding domain R615_11210 PF02678 Pirin R615_11210 PF05726 Pirin C-terminal cupin domain R615_11225 PF03352 Methyladenine glycosylase R615_11230 PF00462 Glutaredoxin R615_11235 PF00929 Exonuclease R615_11235 PF08411 Exonuclease C-terminal R615_11240 PF00561 alpha/beta hydrolase fold R615_11245 PF03993 R615_11245 R615_11250 PF07581 R615_11250 R615_11255 PF01206 Sulfurtransferase TusA R615_11260 PF07690 Major Facilitator Superfamily R615_11265 PF00108 Thiolase, N-terminal domain R615_11265 PF02803 Thiolase, C-terminal domain R615_11270 PF13561 Enoyl-(Acyl carrier protein) reductase R615_11275 PF00571 CBS domain R615_11280 PF00588 SpoU rRNA Methylase family R615_11285 PF05971 Protein of unknown function (DUF890) R615_11290 PF08327 Activator of Hsp90 ATPase homolog 1-like protein R615_11295 PF00924 Mechanosensitive ion channel R615_11315 PF00270 DEAD/DEAH box helicase R615_11315 PF00271 Helicase conserved C-terminal domain R615_11315 PF04408 Helicase associated domain (HA2) R615_11315 PF08482 R615_11315 R615_11320 PF01925 R615_11320 R615_11325 PF00665 Integrase core domain R615_11325 PF13276 R615_11325 R615_11330 PF01527 Transposase R615_11335 PF06769 Plasmid encoded toxin Txe R615_11340 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system R615_11345 PF00210 Ferritin-like domain R615_11350 PF01548 R615_11350 R615_11350 PF02371 R615_11350 R615_11365 PF01925 R615_11365 R615_11370 PF13417 Glutathione S-transferase, N-terminal domain R615_11375 PF00677 Lumazine binding domain R615_11380 PF01734 Patatin-like phospholipase R615_11385 PF02146 Sir2 family R615_11390 PF16576 R615_11390 R615_11395 PF00873 AcrB/AcrD/AcrF family R615_11400 PF04994 TfoX C-terminal domain R615_11405 PF09360 Iron-binding zinc finger CDGSH type R615_11430 PF07859 alpha/beta hydrolase fold R615_11435 PF00909 Ammonium Transporter Family R615_11440 PF01170 Putative RNA methylase family UPF0020 R615_11440 PF02926 THUMP domain R615_11440 PF10672 S-adenosylmethionine-dependent methyltransferase R615_11445 PF04957 Ribosome modulation factor R615_11450 PF01180 Dihydroorotate dehydrogenase R615_11455 PF11197 R615_11455 R615_11465 PF05088 R615_11465 R615_11470 PF07726 ATPase family associated with various cellular activities (AAA) R615_11475 PF01882 R615_11475 R615_11480 PF14316 R615_11480 R615_11485 PF00092 von Willebrand factor type A domain R615_11485 PF07584 R615_11485 R615_11490 PF07719 Tetratricopeptide repeat R615_11490 PF13519 von Willebrand factor type A domain R615_11495 PF13584 R615_11495 R615_11500 PF13192 Thioredoxin domain R615_11505 PF03773 R615_11505 R615_11510 PF13302 Acetyltransferase (GNAT) domain R615_11515 PF04828 Glutathione-dependent formaldehyde-activating enzyme R615_11520 PF00117 Glutamine amidotransferase class-I R615_11525 PF00533 BRCA1 C Terminus (BRCT) domain R615_11525 PF01653 NAD-dependent DNA ligase adenylation domain R615_11525 PF03119 NAD-dependent DNA ligase C4 zinc finger domain R615_11525 PF03120 NAD-dependent DNA ligase OB-fold domain R615_11525 PF12826 Helix-hairpin-helix motif R615_11525 PF14520 Helix-hairpin-helix domain R615_11530 PF04354 ZipA, C-terminal FtsZ-binding domain R615_11535 PF02463 RecF/RecN/SMC N terminal domain R615_11535 PF06470 SMC proteins Flexible Hinge Domain R615_11540 PF00392 Bacterial regulatory proteins, gntR family R615_11540 PF07729 FCD domain R615_11545 PF00487 R615_11545 R615_11555 PF03009 Glycerophosphoryl diester phosphodiesterase family R615_11570 PF03806 R615_11570 R615_11580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family R615_11585 PF03358 NADPH-dependent FMN reductase R615_11590 PF13670 R615_11590 R615_11595 PF01292 Prokaryotic cytochrome b561 R615_11600 PF00893 Small Multidrug Resistance protein R615_11615 PF13508 Acetyltransferase (GNAT) domain R615_11635 PF16133 R615_11635 R615_11645 PF11157 R615_11645 R615_11650 PF05598 R615_11650 R615_11650 PF13751 R615_11650 R615_11670 PF00108 Thiolase, N-terminal domain R615_11670 PF02803 Thiolase, C-terminal domain R615_11675 PF00378 Enoyl-CoA hydratase/isomerase family R615_11675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain R615_11675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain R615_11690 PF00005 ABC transporter R615_11690 PF12848 ABC transporter R615_11690 PF16326 R615_11690 R615_11695 PF16576 R615_11695 R615_11700 PF00873 AcrB/AcrD/AcrF family R615_11735 PF12625 R615_11735 R615_11735 PF12833 Helix-turn-helix domain R615_11745 PF03176 MMPL family R615_11750 PF14870 Photosynthesis system II assembly factor YCF48 R615_11755 PF07044 Protein of unknown function (DUF1329) R615_11760 PF01433 Peptidase family M1 R615_11760 PF11940 Domain of unknown function (DUF3458) R615_11760 PF17432 R615_11760 R615_11765 PF10977 R615_11765 R615_11770 PF07023 R615_11770 R615_11775 PF01694 Rhomboid family R615_11775 PF16733 R615_11775 R615_11780 PF00149 Calcineurin-like phosphoesterase R615_11785 PF01513 ATP-NAD kinase R615_11790 PF08907 R615_11790 R615_11795 PF00291 Pyridoxal-phosphate dependent enzyme R615_11810 PF12836 Helix-hairpin-helix motif R615_11820 PF05768 Glutaredoxin-like domain (DUF836) R615_11835 PF12625 R615_11835 R615_11835 PF12833 Helix-turn-helix domain R615_11840 PF01575 MaoC like domain R615_11855 PF12625 R615_11855 R615_11855 PF12833 Helix-turn-helix domain R615_11860 PF00293 NUDIX domain R615_11865 PF01694 Rhomboid family R615_11870 PF05547 R615_11870 R615_11875 PF12697 Alpha/beta hydrolase family R615_11880 PF00462 Glutaredoxin R615_11885 PF00717 Peptidase S24-like R615_11885 PF10502 Signal peptidase, peptidase S26 R615_11890 PF00561 alpha/beta hydrolase fold R615_11895 PF01595 R615_11895 R615_11895 PF03471 Transporter associated domain R615_11900 PF01966 HD domain R615_11905 PF03176 MMPL family R615_11910 PF01914 R615_11910 R615_11920 PF13937 R615_11920 R615_11925 PF00474 Sodium:solute symporter family R615_11930 PF07859 alpha/beta hydrolase fold R615_11935 PF08534 Redoxin R615_11940 PF01152 Bacterial-like globin R615_11945 PF11231 R615_11945 R615_11950 PF00563 EAL domain R615_11950 PF00990 GGDEF domain R615_11950 PF14827 Sensory domain of two-component sensor kinase R615_11960 PF00929 Exonuclease R615_11965 PF00027 Cyclic nucleotide-binding domain R615_11965 PF00571 CBS domain R615_11965 PF03445 R615_11965 R615_11965 PF10335 R615_11965 R615_11970 PF00474 Sodium:solute symporter family R615_11975 PF04341 R615_11975 R615_11980 PF00512 His Kinase A (phospho-acceptor) domain R615_11980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_11980 PF12860 R615_11980 R615_11985 PF00072 Response regulator receiver domain R615_11985 PF00196 Bacterial regulatory proteins, luxR family R615_11990 PF00501 AMP-binding enzyme R615_11990 PF13193 AMP-binding enzyme C-terminal domain R615_11990 PF16177 R615_11990 R615_12000 PF01345 R615_12000 R615_12000 PF11824 R615_12000 R615_12010 PF01345 R615_12010 R615_12015 PF01345 R615_12015 R615_12020 PF00691 OmpA family R615_12020 PF01345 R615_12020 R615_12025 PF10974 R615_12025 R615_12035 PF03918 Cytochrome C biogenesis protein R615_12040 PF08534 Redoxin R615_12045 PF01578 R615_12045 R615_12045 PF16327 R615_12045 R615_12050 PF03100 CcmE R615_12055 PF04995 R615_12055 R615_12060 PF01578 R615_12060 R615_12065 PF03379 R615_12065 R615_12070 PF00005 ABC transporter R615_12075 PF02120 Flagellar hook-length control protein FliK R615_12080 PF01312 FlhB HrpN YscU SpaS Family R615_12090 PF00710 Asparaginase R615_12095 PF00440 Bacterial regulatory proteins, tetR family R615_12095 PF13305 WHG domain R615_12100 PF04055 Radical SAM superfamily R615_12100 PF06969 HemN C-terminal domain R615_12105 PF08534 Redoxin R615_12115 PF13444 Acetyltransferase (GNAT) domain R615_12120 PF14539 Domain of unknown function (DUF4442) R615_12130 PF00072 Response regulator receiver domain R615_12130 PF00990 GGDEF domain R615_12135 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase R615_12145 PF00871 Acetokinase family R615_12150 PF01515 Phosphate acetyl/butaryl transferase R615_12150 PF07085 DRTGG domain R615_12150 PF13500 AAA domain R615_12155 PF01553 Acyltransferase R615_12165 PF00291 Pyridoxal-phosphate dependent enzyme R615_12170 PF13532 2OG-Fe(II) oxygenase superfamily R615_12180 PF01545 Cation efflux family R615_12180 PF16916 R615_12180 R615_12190 PF00072 Response regulator receiver domain R615_12200 PF13174 Tetratricopeptide repeat R615_12205 PF14302 R615_12205 R615_12210 PF01553 Acyltransferase R615_12220 PF00072 Response regulator receiver domain R615_12220 PF00512 His Kinase A (phospho-acceptor) domain R615_12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_12220 PF08448 PAS fold R615_12225 PF12728 Helix-turn-helix domain R615_12230 PF00072 Response regulator receiver domain R615_12230 PF00563 EAL domain R615_12240 PF00675 Insulinase (Peptidase family M16) R615_12240 PF05193 Peptidase M16 inactive domain R615_12240 PF16187 R615_12240 R615_12245 PF12625 R615_12245 R615_12245 PF12833 Helix-turn-helix domain R615_12250 PF00743 Flavin-binding monooxygenase-like R615_12255 PF00106 short chain dehydrogenase R615_12270 PF09835 R615_12270 R615_12275 PF00672 HAMP domain R615_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_12280 PF13433 Periplasmic binding protein domain R615_12285 PF00529 HlyD family secretion protein R615_12285 PF16576 R615_12285 R615_12290 PF00873 AcrB/AcrD/AcrF family R615_12295 PF13511 R615_12295 R615_12300 PF01368 DHH family R615_12300 PF02272 DHHA1 domain R615_12305 PF14743 DNA ligase OB-like domain R615_12310 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) R615_12315 PF00106 short chain dehydrogenase R615_12330 PF12625 R615_12330 R615_12330 PF12833 Helix-turn-helix domain R615_12340 PF06325 Ribosomal protein L11 methyltransferase (PrmA) R615_12345 PF01464 Transglycosylase SLT domain R615_12345 PF11873 Domain of unknown function (DUF3393) R615_12350 PF07044 Protein of unknown function (DUF1329) R615_12355 PF06930 R615_12355 R615_12360 PF01026 TatD related DNase R615_12365 PF01625 Peptide methionine sulfoxide reductase R615_12370 PF12706 Beta-lactamase superfamily domain R615_12375 PF06325 Ribosomal protein L11 methyltransferase (PrmA) R615_12380 PF00773 RNB domain R615_12380 PF08206 Ribonuclease B OB domain R615_12390 PF04023 FeoA domain R615_12395 PF02421 Ferrous iron transport protein B R615_12395 PF07664 R615_12395 R615_12395 PF07670 Nucleoside recognition R615_12400 PF01613 Flavin reductase like domain R615_12405 PF01758 Sodium Bile acid symporter family R615_12410 PF07273 Protein of unknown function (DUF1439) R615_12415 PF00313 'Cold-shock' DNA-binding domain R615_12420 PF06945 R615_12420 R615_12425 PF01261 Xylose isomerase-like TIM barrel R615_12430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase R615_12430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase R615_12435 PF08668 HDOD domain R615_12440 PF14397 R615_12440 R615_12445 PF14400 R615_12445 R615_12445 PF14402 R615_12445 R615_12450 PF05618 Putative ATP-dependant zinc protease R615_12455 PF00210 Ferritin-like domain R615_12460 PF00210 Ferritin-like domain R615_12465 PF11163 R615_12465 R615_12470 PF00291 Pyridoxal-phosphate dependent enzyme R615_12470 PF14821 Threonine synthase N terminus R615_12480 PF07298 R615_12480 R615_12485 PF11286 R615_12485 R615_12490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family R615_12495 PF00011 Hsp20/alpha crystallin family R615_12500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily R615_12505 PF01894 Uncharacterised protein family UPF0047 R615_12515 PF00448 SRP54-type protein, GTPase domain R615_12515 PF02881 SRP54-type protein, helical bundle domain R615_12515 PF02978 Signal peptide binding domain R615_12520 PF01578 R615_12520 R615_12525 PF00571 CBS domain R615_12525 PF01595 R615_12525 R615_12525 PF03471 Transporter associated domain R615_12530 PF01588 Putative tRNA binding domain R615_12530 PF09334 tRNA synthetases class I (M) R615_12535 PF01774 UreD urease accessory protein R615_12540 PF00547 Urease, gamma subunit R615_12545 PF00699 Urease beta subunit R615_12550 PF00449 Urease alpha-subunit, N-terminal domain R615_12550 PF01979 Amidohydrolase family R615_12555 PF02814 UreE urease accessory protein, N-terminal domain R615_12555 PF05194 UreE urease accessory protein, C-terminal domain R615_12560 PF01730 UreF R615_12565 PF02492 CobW/HypB/UreG, nucleotide-binding domain R615_12570 PF04955 R615_12570 R615_12575 PF01132 Elongation factor P (EF-P) OB domain R615_12575 PF08207 Elongation factor P (EF-P) KOW-like domain R615_12575 PF09285 Elongation factor P, C-terminal R615_12580 PF10093 R615_12580 R615_12585 PF04280 Tim44-like domain R615_12595 PF01965 DJ-1/PfpI family R615_12595 PF12833 Helix-turn-helix domain R615_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_12600 PF02770 Acyl-CoA dehydrogenase, middle domain R615_12600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_12600 PF12418 R615_12600 R615_12600 PF12806 R615_12600 R615_12605 PF00378 Enoyl-CoA hydratase/isomerase family R615_12610 PF01926 50S ribosome-binding GTPase R615_12610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal R615_12615 PF13360 PQQ-like domain R615_12620 PF09976 Tetratricopeptide repeat R615_12625 PF03129 Anticodon binding domain R615_12625 PF13393 Histidyl-tRNA synthetase R615_12630 PF04551 GcpE protein R615_12635 PF13181 Tetratricopeptide repeat R615_12635 PF13432 Tetratricopeptide repeat R615_12640 PF04055 Radical SAM superfamily R615_12645 PF00334 Nucleoside diphosphate kinase R615_12650 PF00266 Aminotransferase class-V R615_12655 PF02082 Transcriptional regulator R615_12660 PF00132 Bacterial transferase hexapeptide (six repeats) R615_12665 PF00588 SpoU rRNA Methylase family R615_12670 PF00459 Inositol monophosphatase family R615_12680 PF00313 'Cold-shock' DNA-binding domain R615_12685 PF04102 SlyX R615_12690 PF01553 Acyltransferase R615_12695 PF04445 Putative SAM-dependent methyltransferase R615_12700 PF02673 R615_12700 R615_12705 PF00814 Glycoprotease family R615_12710 PF02178 AT hook motif R615_12715 PF00406 Adenylate kinase R615_12715 PF05191 Adenylate kinase, active site lid R615_12720 PF00311 Phosphoenolpyruvate carboxylase R615_12725 PF03819 MazG nucleotide pyrophosphohydrolase domain R615_12730 PF02824 TGS domain R615_12730 PF04607 Region found in RelA / SpoT proteins R615_12730 PF13291 ACT domain R615_12730 PF13328 HD domain R615_12735 PF05958 tRNA (Uracil-5-)-methyltransferase R615_12740 PF00291 Pyridoxal-phosphate dependent enzyme R615_12745 PF00072 Response regulator receiver domain R615_12745 PF00512 His Kinase A (phospho-acceptor) domain R615_12745 PF01627 Hpt domain R615_12745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_12745 PF09984 R615_12745 R615_12750 PF01648 4'-phosphopantetheinyl transferase superfamily R615_12755 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ R615_12760 PF02565 Recombination protein O C terminal R615_12765 PF01926 50S ribosome-binding GTPase R615_12765 PF07650 KH domain R615_12770 PF00035 Double-stranded RNA binding motif R615_12770 PF14622 Ribonuclease-III-like R615_12775 PF16137 R615_12775 R615_12780 PF00009 Elongation factor Tu GTP binding domain R615_12780 PF00679 Elongation factor G C-terminus R615_12780 PF03144 Elongation factor Tu domain 2 R615_12780 PF06421 GTP-binding protein LepA C-terminus R615_12785 PF13180 PDZ domain R615_12785 PF13365 Trypsin-like peptidase domain R615_12790 PF04246 R615_12790 R615_12795 PF03888 MucB/RseB family R615_12795 PF17188 R615_12795 R615_12800 PF03872 Anti sigma-E protein RseA, N-terminal domain R615_12805 PF04542 Sigma-70 region 2 R615_12805 PF08281 Sigma-70, region 4 R615_12810 PF00890 FAD binding domain R615_12810 PF02910 Fumarate reductase flavoprotein C-term R615_12820 PF03937 Flavinator of succinate dehydrogenase R615_12825 PF01571 Aminomethyltransferase folate-binding domain R615_12830 PF08668 HDOD domain R615_12845 PF00561 alpha/beta hydrolase fold R615_12850 PF14539 Domain of unknown function (DUF4442) R615_12855 PF13432 Tetratricopeptide repeat R615_12860 PF03544 Gram-negative bacterial TonB protein C-terminal R615_12865 PF02472 Biopolymer transport protein ExbD/TolR R615_12870 PF01618 R615_12870 R615_12875 PF01618 R615_12875 R615_12880 PF11932 R615_12880 R615_12890 PF00593 TonB dependent receptor R615_12890 PF07715 TonB-dependent Receptor Plug Domain R615_12890 PF13620 Carboxypeptidase regulatory-like domain R615_12895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_12895 PF03466 LysR substrate binding domain R615_12900 PF03150 Di-haem cytochrome c peroxidase R615_12900 PF07593 R615_12900 R615_12900 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella R615_12905 PF10095 R615_12905 R615_12910 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) R615_12915 PF01980 Uncharacterised protein family UPF0066 R615_12920 PF05724 Thiopurine S-methyltransferase (TPMT) R615_12925 PF03831 PhnA protein R615_12925 PF08274 PhnA Zinc-Ribbon R615_12930 PF10118 R615_12930 R615_12935 PF12625 R615_12935 R615_12935 PF12833 Helix-turn-helix domain R615_12940 PF01189 NOL1/NOP2/sun family R615_12945 PF00497 Bacterial extracellular solute-binding proteins, family 3 R615_12950 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain R615_12950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain R615_12955 PF00005 ABC transporter R615_12955 PF00664 ABC transporter transmembrane region R615_12960 PF00593 TonB dependent receptor R615_12965 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase R615_12970 PF09423 PhoD-like phosphatase R615_12980 PF00762 Ferrochelatase R615_12985 PF14403 R615_12985 R615_12990 PF04168 R615_12990 R615_12995 PF01841 Transglutaminase-like superfamily R615_12995 PF08379 R615_12995 R615_13000 PF00227 Proteasome subunit R615_13005 PF03358 NADPH-dependent FMN reductase R615_13020 PF13449 Esterase-like activity of phytase R615_13035 PF00881 Nitroreductase family R615_13040 PF01292 Prokaryotic cytochrome b561 R615_13055 PF01555 DNA methylase R615_13065 PF05717 R615_13065 R615_13080 PF06048 R615_13080 R615_13080 PF13362 Toprim domain R615_13090 PF00239 Resolvase, N terminal domain R615_13090 PF13384 Homeodomain-like domain R615_13095 PF13289 R615_13095 R615_13105 PF04002 RadC-like JAB domain R615_13110 PF01381 Helix-turn-helix R615_13125 PF00589 Phage integrase family R615_13135 PF00781 Diacylglycerol kinase catalytic domain R615_13140 PF12146 Putative lysophospholipase R615_13145 PF01047 MarR family R615_13150 PF00583 Acetyltransferase (GNAT) family R615_13155 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein R615_13185 PF03747 ADP-ribosylglycohydrolase R615_13190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases R615_13195 PF04348 LppC putative lipoprotein R615_13200 PF02021 Uncharacterised protein family UPF0102 R615_13205 PF13580 SIS domain R615_13210 PF01544 CorA-like Mg2+ transporter protein R615_13220 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_13225 PF00899 ThiF family R615_13230 PF05175 Methyltransferase small domain R615_13235 PF00472 RF-1 domain R615_13235 PF03462 PCRF domain R615_13240 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain R615_13240 PF01488 Shikimate / quinate 5-dehydrogenase R615_13240 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain R615_13245 PF13432 Tetratricopeptide repeat R615_13245 PF14559 Tetratricopeptide repeat R615_13250 PF03550 Outer membrane lipoprotein LolB R615_13255 PF00288 GHMP kinases N terminal domain R615_13265 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase R615_13265 PF14572 Phosphoribosyl synthetase-associated domain R615_13270 PF01386 Ribosomal L25p family R615_13270 PF14693 Ribosomal protein TL5, C-terminal domain R615_13275 PF01195 Peptidyl-tRNA hydrolase R615_13280 PF01926 50S ribosome-binding GTPase R615_13280 PF06071 Protein of unknown function (DUF933) R615_13285 PF07690 Major Facilitator Superfamily R615_13310 PF08850 R615_13310 R615_13315 PF00919 Uncharacterized protein family UPF0004 R615_13315 PF01938 TRAM domain R615_13315 PF04055 Radical SAM superfamily R615_13320 PF02562 PhoH-like protein R615_13325 PF02130 Uncharacterized protein family UPF0054 R615_13330 PF00571 CBS domain R615_13330 PF03471 Transporter associated domain R615_13335 PF00795 Carbon-nitrogen hydrolase R615_13340 PF00392 Bacterial regulatory proteins, gntR family R615_13350 PF00293 NUDIX domain R615_13355 PF01960 ArgJ family R615_13360 PF01043 SecA preprotein cross-linking domain R615_13360 PF02810 SEC-C motif R615_13360 PF07516 SecA Wing and Scaffold domain R615_13360 PF07517 SecA DEAD-like domain R615_13365 PF01551 Peptidase family M23 R615_13370 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase R615_13375 PF00091 Tubulin/FtsZ family, GTPase domain R615_13375 PF12327 FtsZ family, C-terminal domain R615_13380 PF02491 SHS2 domain inserted in FTSA R615_13380 PF14450 Cell division protein FtsA R615_13385 PF03799 Cell division protein FtsQ R615_13385 PF08478 POTRA domain, FtsQ-type R615_13390 PF01820 D-ala D-ala ligase N-terminus R615_13390 PF07478 D-ala D-ala ligase C-terminus R615_13395 PF01225 Mur ligase family, catalytic domain R615_13395 PF02875 Mur ligase family, glutamate ligase domain R615_13395 PF08245 Mur ligase middle domain R615_13400 PF03033 Glycosyltransferase family 28 N-terminal domain R615_13400 PF04101 Glycosyltransferase family 28 C-terminal domain R615_13405 PF01098 R615_13405 R615_13410 PF02875 Mur ligase family, glutamate ligase domain R615_13410 PF08245 Mur ligase middle domain R615_13415 PF00953 Glycosyl transferase family 4 R615_13415 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 R615_13420 PF01225 Mur ligase family, catalytic domain R615_13420 PF02875 Mur ligase family, glutamate ligase domain R615_13420 PF08245 Mur ligase middle domain R615_13425 PF01225 Mur ligase family, catalytic domain R615_13425 PF02875 Mur ligase family, glutamate ligase domain R615_13425 PF08245 Mur ligase middle domain R615_13430 PF00905 Penicillin binding protein transpeptidase domain R615_13430 PF03717 Penicillin-binding Protein dimerisation domain R615_13435 PF04999 R615_13435 R615_13440 PF01795 MraW methylase family R615_13445 PF02381 MraZ protein R615_13450 PF04367 R615_13450 R615_13460 PF09951 R615_13460 R615_13480 PF13505 Outer membrane protein beta-barrel domain R615_13485 PF00202 Aminotransferase class-III R615_13490 PF00155 Aminotransferase class I and II R615_13495 PF08241 Methyltransferase domain R615_13500 PF13500 AAA domain R615_13505 PF06808 R615_13505 R615_13510 PF00027 Cyclic nucleotide-binding domain R615_13515 PF00578 AhpC/TSA family R615_13515 PF10417 C-terminal domain of 1-Cys peroxiredoxin R615_13525 PF00999 Sodium/hydrogen exchanger family R615_13525 PF02254 TrkA-N domain R615_13530 PF12833 Helix-turn-helix domain R615_13535 PF01571 Aminomethyltransferase folate-binding domain R615_13535 PF08669 Glycine cleavage T-protein C-terminal barrel domain R615_13540 PF01597 Glycine cleavage H-protein R615_13545 PF02347 Glycine cleavage system P-protein R615_13550 PF00563 EAL domain R615_13550 PF00990 GGDEF domain R615_13555 PF00563 EAL domain R615_13555 PF00990 GGDEF domain R615_13565 PF00892 EamA-like transporter family R615_13570 PF00982 Glycosyltransferase family 20 R615_13570 PF05116 Sucrose-6F-phosphate phosphohydrolase R615_13575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_13575 PF00672 HAMP domain R615_13585 PF07690 Major Facilitator Superfamily R615_13590 PF00128 Alpha amylase, catalytic domain R615_13595 PF06039 R615_13595 R615_13600 PF13509 S1 domain R615_13605 PF06041 Bacterial protein of unknown function (DUF924) R615_13615 PF09905 Uncharacterized conserved protein (DUF2132) R615_13620 PF02028 BCCT family transporter R615_13625 PF00005 ABC transporter R615_13625 PF12848 ABC transporter R615_13630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_13635 PF03537 Glycoside-hydrolase family GH114 R615_13640 PF00027 Cyclic nucleotide-binding domain R615_13645 PF03600 Citrate transporter R615_13650 PF00043 Glutathione S-transferase, C-terminal domain R615_13650 PF13417 Glutathione S-transferase, N-terminal domain R615_13655 PF13279 Thioesterase-like superfamily R615_13665 PF01171 PP-loop family R615_13665 PF09179 TilS substrate binding domain R615_13665 PF11734 TilS substrate C-terminal domain R615_13670 PF02811 PHP domain R615_13670 PF07733 Bacterial DNA polymerase III alpha subunit R615_13670 PF14579 Helix-hairpin-helix motif R615_13675 PF08443 RimK-like ATP-grasp domain R615_13680 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family R615_13685 PF00885 6,7-dimethyl-8-ribityllumazine synthase R615_13695 PF01026 TatD related DNase R615_13705 PF00270 DEAD/DEAH box helicase R615_13705 PF00271 Helicase conserved C-terminal domain R615_13715 PF13437 HlyD family secretion protein R615_13715 PF13533 Biotin-lipoyl like R615_13720 PF00005 ABC transporter R615_13720 PF12698 ABC-2 family transporter protein R615_13725 PF12698 ABC-2 family transporter protein R615_13730 PF06912 R615_13730 R615_13735 PF09905 Uncharacterized conserved protein (DUF2132) R615_13750 PF13692 Glycosyl transferases group 1 R615_13770 PF09954 R615_13770 R615_13775 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) R615_13775 PF01844 HNH endonuclease R615_13775 PF08388 R615_13775 R615_13775 PF13655 R615_13775 R615_13785 PF00118 TCP-1/cpn60 chaperonin family R615_13790 PF00166 Chaperonin 10 Kd subunit R615_13795 PF04186 R615_13795 R615_13800 PF00743 Flavin-binding monooxygenase-like R615_13800 PF13450 NAD(P)-binding Rossmann-like domain R615_13810 PF04012 R615_13810 R615_13815 PF07290 R615_13815 R615_13820 PF15975 R615_13820 R615_13825 PF00378 Enoyl-CoA hydratase/isomerase family R615_13825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain R615_13825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain R615_13830 PF00108 Thiolase, N-terminal domain R615_13830 PF02803 Thiolase, C-terminal domain R615_13840 PF02515 CoA-transferase family III R615_13845 PF09278 MerR, DNA binding R615_13850 PF13561 Enoyl-(Acyl carrier protein) reductase R615_13855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain R615_13860 PF00743 Flavin-binding monooxygenase-like R615_13860 PF13450 NAD(P)-binding Rossmann-like domain R615_13865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain R615_13865 PF00672 HAMP domain R615_13870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) R615_13870 PF00364 Biotin-requiring enzyme R615_13870 PF02817 e3 binding domain R615_13875 PF00456 Transketolase, thiamine diphosphate binding domain R615_13880 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP R615_13880 PF12557 Cob(I)alamin adenosyltransferase N terminal R615_13885 PF01497 Periplasmic binding protein R615_13890 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain R615_13890 PF07685 CobB/CobQ-like glutamine amidotransferase domain R615_13895 PF02654 R615_13895 R615_13900 PF00300 Histidine phosphatase superfamily (branch 1) R615_13905 PF02277 Phosphoribosyltransferase R615_13910 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase R615_13915 PF07238 PilZ domain R615_13920 PF00480 ROK family R615_13930 PF01510 N-acetylmuramoyl-L-alanine amidase R615_13935 PF01235 R615_13935 R615_13940 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain R615_13940 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain R615_13945 PF07963 Prokaryotic N-terminal methylation motif R615_13955 PF00884 Sulfatase R615_13960 PF00437 Type II/IV secretion system protein R615_13960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain R615_13965 PF00482 Type II secretion system (T2SS), protein F R615_13970 PF01478 Type IV leader peptidase family R615_13970 PF06750 R615_13970 R615_13975 PF01121 Dephospho-CoA kinase R615_13980 PF03884 Domain of unknown function (DUF329) R615_13990 PF00196 Bacterial regulatory proteins, luxR family R615_13990 PF13401 AAA domain R615_13995 PF03929 R615_13995 R615_14000 PF04205 FMN-binding domain R615_14005 PF13609 Gram-negative porin R615_14010 PF00133 tRNA synthetases class I (I, L, M and V) R615_14010 PF08264 Anticodon-binding domain of tRNA R615_14010 PF09334 tRNA synthetases class I (M) R615_14010 PF13603 Leucyl-tRNA synthetase, Domain 2 R615_14015 PF04390 Lipopolysaccharide-assembly R615_14020 PF06144 DNA polymerase III, delta subunit R615_14020 PF14840 Processivity clamp loader gamma complex DNA pol III C-term R615_14030 PF04321 RmlD substrate binding domain R615_14035 PF00990 GGDEF domain R615_14035 PF07695 R615_14035 R615_14035 PF07696 7TMR-DISM extracellular 2 R615_14040 PF01161 Phosphatidylethanolamine-binding protein R615_14050 PF00462 Glutaredoxin R615_14050 PF08534 Redoxin R615_14060 PF02412 Thrombospondin type 3 repeat R615_14070 PF02441 Flavoprotein R615_14075 PF01225 Mur ligase family, catalytic domain R615_14075 PF02875 Mur ligase family, glutamate ligase domain R615_14075 PF08245 Mur ligase middle domain R615_14080 PF00316 Fructose-1-6-bisphosphatase R615_14085 PF00072 Response regulator receiver domain R615_14085 PF00512 His Kinase A (phospho-acceptor) domain R615_14085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_14095 PF07715 TonB-dependent Receptor Plug Domain R615_14105 PF07715 TonB-dependent Receptor Plug Domain R615_14110 PF00719 Inorganic pyrophosphatase R615_14115 PF13426 PAS domain R615_14120 PF13411 MerR HTH family regulatory protein R615_14125 PF05175 Methyltransferase small domain R615_14125 PF08468 Methyltransferase small domain N-terminal R615_14130 PF07690 Major Facilitator Superfamily R615_14135 PF02675 S-adenosylmethionine decarboxylase R615_14140 PF02566 OsmC-like protein R615_14145 PF00027 Cyclic nucleotide-binding domain R615_14145 PF00325 Bacterial regulatory proteins, crp family R615_14150 PF00218 Indole-3-glycerol phosphate synthase R615_14155 PF00591 Glycosyl transferase family, a/b domain R615_14155 PF02885 Glycosyl transferase family, helical bundle domain R615_14160 PF00117 Glutamine amidotransferase class-I R615_14165 PF00425 chorismate binding enzyme R615_14165 PF04715 Anthranilate synthase component I, N terminal region R615_14170 PF12710 haloacid dehalogenase-like hydrolase R615_14180 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein R615_14185 PF00440 Bacterial regulatory proteins, tetR family R615_14190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_14190 PF02770 Acyl-CoA dehydrogenase, middle domain R615_14190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_14190 PF12418 R615_14190 R615_14190 PF12806 R615_14190 R615_14195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain R615_14195 PF02770 Acyl-CoA dehydrogenase, middle domain R615_14195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain R615_14195 PF12418 R615_14195 R615_14195 PF12806 R615_14195 R615_14200 PF12118 R615_14200 R615_14210 PF04055 Radical SAM superfamily R615_14210 PF06968 Biotin and Thiamin Synthesis associated domain R615_14215 PF00156 Phosphoribosyl transferase domain R615_14220 PF01636 Phosphotransferase enzyme family R615_14225 PF13505 Outer membrane protein beta-barrel domain R615_14230 PF07044 Protein of unknown function (DUF1329) R615_14235 PF06980 R615_14235 R615_14240 PF12262 R615_14240 R615_14245 PF00108 Thiolase, N-terminal domain R615_14245 PF02803 Thiolase, C-terminal domain R615_14250 PF00551 Formyl transferase R615_14260 PF00571 CBS domain R615_14265 PF03641 Possible lysine decarboxylase R615_14265 PF11892 Domain of unknown function (DUF3412) R615_14265 PF14793 Domain of unknown function (DUF4478) R615_14270 PF00245 Alkaline phosphatase R615_14280 PF05787 Bacterial protein of unknown function (DUF839) R615_14285 PF00691 OmpA family R615_14285 PF13677 R615_14285 R615_14290 PF01618 R615_14290 R615_14295 PF01706 FliG C-terminal domain R615_14295 PF08345 R615_14295 R615_14295 PF14841 FliG middle domain R615_14300 PF07719 Tetratricopeptide repeat R615_14310 PF01329 Pterin 4 alpha carbinolamine dehydratase R615_14315 PF05681 R615_14315 R615_14315 PF05683 Fumarase C-terminus R615_14320 PF11008 R615_14320 R615_14345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain R615_14345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain R615_14350 PF02545 Maf-like protein R615_14355 PF00263 R615_14355 R615_14355 PF03958 Bacterial type II/III secretion system short domain R615_14360 PF11356 Type IV pilus biogenesis R615_14365 PF01203 R615_14365 R615_14370 PF01541 GIY-YIG catalytic domain R615_14375 PF03006 R615_14375 R615_14380 PF00472 RF-1 domain R615_14385 PF00226 DnaJ domain R615_14385 PF05099 Tellurite resistance protein TerB R615_14390 PF00483 Nucleotidyl transferase R615_14395 PF01636 Phosphotransferase enzyme family R615_14400 PF03968 OstA-like protein R615_14400 PF04453 Organic solvent tolerance protein R615_14405 PF00639 PPIC-type PPIASE domain R615_14405 PF09312 SurA N-terminal domain R615_14405 PF13616 PPIC-type PPIASE domain R615_14410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA R615_14415 PF00398 Ribosomal RNA adenine dimethylase R615_14420 PF04379 Protein of unknown function (DUF525) R615_14425 PF00149 Calcineurin-like phosphoesterase R615_14430 PF00581 Rhodanese-like domain R615_14435 PF06798 R615_14435 R615_14435 PF08298 PrkA AAA domain R615_14440 PF04285 R615_14440 R615_14445 PF04293 R615_14445 R615_14460 PF16538 R615_14460 R615_14460 PF16539 R615_14460 R615_14460 PF16548 R615_14460 R615_14465 PF02169 LPP20 lipoprotein R615_14470 PF00892 EamA-like transporter family R615_14475 PF13729 R615_14475 R615_14480 PF01743 Poly A polymerase head domain R615_14480 PF01966 HD domain R615_14480 PF12627 Probable RNA and SrmB- binding site of polymerase A R615_14485 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) R615_14490 PF02152 Dihydroneopterin aldolase R615_14495 PF00814 Glycoprotease family R615_14500 PF01165 Ribosomal protein S21 R615_14505 PF09424 Yqey-like protein R615_14510 PF01807 CHC2 zinc finger R615_14510 PF08275 DNA primase catalytic core, N-terminal domain R615_14510 PF08278 DNA primase DnaG DnaB-binding R615_14510 PF10410 DnaB-helicase binding domain of primase R615_14510 PF13662 Toprim domain R615_14515 PF00140 Sigma-70 factor, region 1 R615_14515 PF03979 Sigma-70 factor, region 1 R615_14515 PF04539 Sigma-70 region 3 R615_14515 PF04542 Sigma-70 region 2 R615_14515 PF04545 Sigma-70, region 4 R615_14515 PF04546 Sigma-70, non-essential region R615_14525 PF00990 GGDEF domain R615_14525 PF07695 R615_14525 R615_14525 PF07696 7TMR-DISM extracellular 2 R615_14530 PF12833 Helix-turn-helix domain R615_14540 PF03060 Nitronate monooxygenase R615_14545 PF00378 Enoyl-CoA hydratase/isomerase family R615_14550 PF12804 MobA-like NTP transferase domain R615_14555 PF00501 AMP-binding enzyme R615_14555 PF13193 AMP-binding enzyme C-terminal domain R615_14560 PF10118 R615_14560 R615_14565 PF10118 R615_14565 R615_14570 PF02639 R615_14570 R615_14575 PF02558 Ketopantoate reductase PanE/ApbA R615_14575 PF08546 Ketopantoate reductase PanE/ApbA C terminal R615_14580 PF13738 Pyridine nucleotide-disulphide oxidoreductase R615_14585 PF12625 R615_14585 R615_14585 PF12833 Helix-turn-helix domain R615_14590 PF00990 GGDEF domain R615_14600 PF13489 Methyltransferase domain R615_14605 PF04463 R615_14605 R615_14610 PF00596 Class II Aldolase and Adducin N-terminal domain R615_14630 PF02599 Global regulator protein family R615_14635 PF00696 Amino acid kinase family R615_14635 PF01842 ACT domain R615_14635 PF13840 ACT domain R615_14640 PF01411 tRNA synthetases class II (A) R615_14640 PF02272 DHHA1 domain R615_14640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain R615_14645 PF11127 Protein of unknown function (DUF2892) R615_14660 PF00561 alpha/beta hydrolase fold R615_14665 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_14670 PF12625 R615_14670 R615_14670 PF12833 Helix-turn-helix domain R615_14675 PF02631 RecX family R615_14680 PF00154 recA bacterial DNA recombination protein R615_14685 PF02464 Competence-damaged protein R615_14695 PF16576 R615_14695 R615_14700 PF00440 Bacterial regulatory proteins, tetR family R615_14700 PF13305 WHG domain R615_14710 PF00488 MutS domain V R615_14710 PF01624 MutS domain I R615_14710 PF05188 MutS domain II R615_14710 PF05190 MutS family domain IV R615_14710 PF05192 MutS domain III R615_14715 PF00037 4Fe-4S binding domain R615_14715 PF11953 Domain of unknown function (DUF3470) R615_14720 PF00994 Probable molybdopterin binding domain R615_14720 PF03453 MoeA N-terminal region (domain I and II) R615_14720 PF03454 MoeA C-terminal region (domain IV) R615_14725 PF01557 Fumarylacetoacetate (FAA) hydrolase family R615_14730 PF07238 PilZ domain R615_14735 PF00005 ABC transporter R615_14735 PF12848 ABC transporter R615_14740 PF00563 EAL domain R615_14740 PF00989 PAS fold R615_14740 PF00990 GGDEF domain R615_14740 PF08447 PAS fold R615_14740 PF13426 PAS domain R615_14745 PF00464 Serine hydroxymethyltransferase R615_14755 PF10118 R615_14755 R615_14760 PF10118 R615_14760 R615_14765 PF10118 R615_14765 R615_14770 PF03477 ATP cone domain R615_14775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region R615_14775 PF01872 RibD C-terminal domain R615_14780 PF00677 Lumazine binding domain R615_14785 PF00925 GTP cyclohydrolase II R615_14785 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase R615_14790 PF00885 6,7-dimethyl-8-ribityllumazine synthase R615_14795 PF01029 NusB family R615_14800 PF00586 AIR synthase related protein, N-terminal domain R615_14800 PF02769 AIR synthase related protein, C-terminal domain R615_14805 PF06844 Protein of unknown function (DUF1244) R615_14810 PF04402 Protein of unknown function (DUF541) R615_14815 PF07866 Protein of unknown function (DUF1653) R615_14820 PF04073 Aminoacyl-tRNA editing domain R615_14830 PF00206 Lyase R615_14830 PF10415 Fumarase C C-terminus R615_14835 PF00106 short chain dehydrogenase R615_14840 PF00106 short chain dehydrogenase R615_14845 PF13738 Pyridine nucleotide-disulphide oxidoreductase R615_14850 PF00440 Bacterial regulatory proteins, tetR family R615_14860 PF00588 SpoU rRNA Methylase family R615_14865 PF00456 Transketolase, thiamine diphosphate binding domain R615_14865 PF02779 Transketolase, pyrimidine binding domain R615_14865 PF02780 Transketolase, C-terminal domain R615_14870 PF13407 Periplasmic binding protein domain R615_14875 PF00849 RNA pseudouridylate synthase R615_14880 PF12697 Alpha/beta hydrolase family R615_14885 PF09423 PhoD-like phosphatase R615_14885 PF16655 R615_14885 R615_14890 PF00561 alpha/beta hydrolase fold R615_14910 PF00883 Cytosol aminopeptidase family, catalytic domain R615_14920 PF00484 Carbonic anhydrase R615_14925 PF00364 Biotin-requiring enzyme R615_14925 PF00682 HMGL-like R615_14925 PF02436 Conserved carboxylase domain R615_14930 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain R615_14930 PF02785 Biotin carboxylase C-terminal domain R615_14930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain R615_14935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_14935 PF03466 LysR substrate binding domain R615_14940 PF09995 R615_14940 R615_14950 PF07045 Protein of unknown function (DUF1330) R615_14955 PF13419 Haloacid dehalogenase-like hydrolase R615_14960 PF01925 R615_14960 R615_14965 PF02668 Taurine catabolism dioxygenase TauD, TfdA family R615_14970 PF05141 Pyoverdine/dityrosine biosynthesis protein R615_14975 PF04820 Tryptophan halogenase R615_14980 PF04273 Putative phosphatase (DUF442) R615_14985 PF03176 MMPL family R615_14985 PF17131 R615_14985 R615_15005 PF00296 Luciferase-like monooxygenase R615_15015 PF00563 EAL domain R615_15020 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_15020 PF13192 Thioredoxin domain R615_15025 PF00578 AhpC/TSA family R615_15025 PF10417 C-terminal domain of 1-Cys peroxiredoxin R615_15030 PF05643 Putative bacterial lipoprotein (DUF799) R615_15035 PF16068 R615_15035 R615_15040 PF03783 Curli production assembly/transport component CsgG R615_15045 PF00924 Mechanosensitive ion channel R615_15050 PF00588 SpoU rRNA Methylase family R615_15050 PF08032 RNA 2'-O ribose methyltransferase substrate binding R615_15055 PF00575 S1 RNA binding domain R615_15055 PF00773 RNB domain R615_15055 PF08206 Ribonuclease B OB domain R615_15060 PF06155 Protein of unknown function (DUF971) R615_15065 PF00004 ATPase family associated with various cellular activities (AAA) R615_15065 PF07724 AAA domain (Cdc48 subfamily) R615_15065 PF10431 C-terminal, D2-small domain, of ClpB protein R615_15070 PF00227 Proteasome subunit R615_15075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase R615_15080 PF02169 LPP20 lipoprotein R615_15090 PF00753 Metallo-beta-lactamase superfamily R615_15100 PF01197 Ribosomal protein L31 R615_15105 PF00270 DEAD/DEAH box helicase R615_15105 PF00271 Helicase conserved C-terminal domain R615_15110 PF04608 Phosphatidylglycerophosphatase A R615_15115 PF04298 R615_15115 R615_15120 PF00925 GTP cyclohydrolase II R615_15125 PF00072 Response regulator receiver domain R615_15125 PF13487 HD domain R615_15130 PF00512 His Kinase A (phospho-acceptor) domain R615_15130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_15135 PF02779 Transketolase, pyrimidine binding domain R615_15135 PF02780 Transketolase, C-terminal domain R615_15135 PF13292 1-deoxy-D-xylulose-5-phosphate synthase R615_15140 PF00348 Polyprenyl synthetase R615_15145 PF02609 Exonuclease VII small subunit R615_15150 PF01618 R615_15150 R615_15155 PF00691 OmpA family R615_15155 PF13677 R615_15155 R615_15160 PF07238 PilZ domain R615_15165 PF04452 RNA methyltransferase R615_15170 PF10277 R615_15170 R615_15175 PF13481 AAA domain R615_15175 PF13541 Subunit ChlI of Mg-chelatase R615_15180 PF03334 R615_15180 R615_15185 PF04066 R615_15185 R615_15190 PF01899 R615_15190 R615_15195 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains R615_15200 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L R615_15205 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains R615_15205 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus R615_15205 PF04039 R615_15205 R615_15205 PF13244 R615_15205 R615_15210 PF01208 Uroporphyrinogen decarboxylase (URO-D) R615_15220 PF07992 Pyridine nucleotide-disulphide oxidoreductase R615_15220 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster R615_15225 PF00310 Glutamine amidotransferases class-II R615_15225 PF01493 GXGXG motif R615_15225 PF01645 Conserved region in glutamate synthase R615_15225 PF04898 Glutamate synthase central domain R615_15230 PF05036 Sporulation related domain R615_15230 PF13401 AAA domain R615_15235 PF01761 3-dehydroquinate synthase R615_15240 PF01202 Shikimate kinase R615_15245 PF00263 R615_15245 R615_15245 PF03958 Bacterial type II/III secretion system short domain R615_15245 PF07660 Secretin and TonB N terminus short domain R615_15245 PF11741 AMIN domain R615_15250 PF04351 Pilus assembly protein, PilP R615_15255 PF04350 Pilus assembly protein, PilO R615_15260 PF05137 R615_15260 R615_15265 PF11104 Type IV pilus assembly protein PilM; R615_15270 PF00905 Penicillin binding protein transpeptidase domain R615_15270 PF00912 Transglycosylase R615_15270 PF17092 R615_15270 R615_15275 PF01565 FAD binding domain R615_15275 PF02913 FAD linked oxidases, C-terminal domain R615_15280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain R615_15280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain R615_15285 PF11871 R615_15285 R615_15285 PF13487 HD domain R615_15290 PF00005 ABC transporter R615_15295 PF01230 HIT domain R615_15300 PF00072 Response regulator receiver domain R615_15300 PF00990 GGDEF domain R615_15335 PF01794 R615_15335 R615_15340 PF00174 Oxidoreductase molybdopterin binding domain R615_15345 PF01066 CDP-alcohol phosphatidyltransferase R615_15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_15350 PF03466 LysR substrate binding domain R615_15355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain R615_15355 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain R615_15360 PF00990 GGDEF domain R615_15360 PF07695 R615_15360 R615_15365 PF00155 Aminotransferase class I and II R615_15370 PF02657 Fe-S metabolism associated domain R615_15380 PF00732 GMC oxidoreductase R615_15380 PF05199 GMC oxidoreductase R615_15385 PF01764 Lipase (class 3) R615_15395 PF01116 Fructose-bisphosphate aldolase class-II R615_15400 PF00162 Phosphoglycerate kinase R615_15405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain R615_15405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain R615_15410 PF13489 Methyltransferase domain R615_15420 PF06719 R615_15420 R615_15420 PF12833 Helix-turn-helix domain R615_15425 PF00171 Aldehyde dehydrogenase family R615_15430 PF08443 RimK-like ATP-grasp domain R615_15435 PF01522 Polysaccharide deacetylase R615_15440 PF06181 R615_15440 R615_15445 PF01979 Amidohydrolase family R615_15450 PF04115 Ureidoglycolate hydrolase R615_15455 PF00576 HIUase/Transthyretin family R615_15460 PF09349 OHCU decarboxylase R615_15465 PF03561 Allantoicase repeat R615_15470 PF02625 XdhC and CoxI family R615_15470 PF13478 XdhC Rossmann domain R615_15475 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain R615_15475 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase R615_15480 PF00111 2Fe-2S iron-sulfur cluster binding domain R615_15480 PF00941 FAD binding domain in molybdopterin dehydrogenase R615_15480 PF01799 [2Fe-2S] binding domain R615_15480 PF03450 CO dehydrogenase flavoprotein C-terminal domain R615_15485 PF00005 ABC transporter R615_15490 PF02653 R615_15490 R615_15495 PF02653 R615_15495 R615_15500 PF01156 Inosine-uridine preferring nucleoside hydrolase R615_15505 PF00962 Adenosine/AMP deaminase R615_15510 PF00593 TonB dependent receptor R615_15510 PF07715 TonB-dependent Receptor Plug Domain R615_15515 PF11932 R615_15515 R615_15520 PF01618 R615_15520 R615_15525 PF01618 R615_15525 R615_15530 PF02472 Biopolymer transport protein ExbD/TolR R615_15535 PF03544 Gram-negative bacterial TonB protein C-terminal R615_15540 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) R615_15540 PF13181 Tetratricopeptide repeat R615_15545 PF06516 R615_15545 R615_15550 PF00440 Bacterial regulatory proteins, tetR family R615_15550 PF08362 YcdC-like protein, C-terminal region R615_15555 PF02112 R615_15555 R615_15560 PF01979 Amidohydrolase family R615_15565 PF03929 R615_15565 R615_15570 PF00107 Zinc-binding dehydrogenase R615_15570 PF08240 Alcohol dehydrogenase GroES-like domain R615_15590 PF04237 YjbR R615_15595 PF00842 Alanine racemase, C-terminal domain R615_15595 PF01168 Alanine racemase, N-terminal domain R615_15605 PF11417 Loader and inhibitor of phage G40P R615_15610 PF04773 FecR protein R615_15615 PF14255 R615_15615 R615_15620 PF14076 R615_15620 R615_15635 PF00593 TonB dependent receptor R615_15635 PF07715 TonB-dependent Receptor Plug Domain R615_15640 PF13302 Acetyltransferase (GNAT) domain R615_15650 PF00772 DnaB-like helicase N terminal domain R615_15650 PF03796 DnaB-like helicase C terminal domain R615_15655 PF01281 Ribosomal protein L9, N-terminal domain R615_15655 PF03948 Ribosomal protein L9, C-terminal domain R615_15665 PF01084 Ribosomal protein S18 R615_15670 PF01250 Ribosomal protein S6 R615_15690 PF00258 Flavodoxin R615_15700 PF00293 NUDIX domain R615_15705 PF02492 CobW/HypB/UreG, nucleotide-binding domain R615_15710 PF00459 Inositol monophosphatase family R615_15715 PF03280 Proteobacterial lipase chaperone protein R615_15720 PF00561 alpha/beta hydrolase fold R615_15725 PF03060 Nitronate monooxygenase R615_15735 PF00512 His Kinase A (phospho-acceptor) domain R615_15735 PF00672 HAMP domain R615_15735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_15740 PF00072 Response regulator receiver domain R615_15740 PF00486 Transcriptional regulatory protein, C terminal R615_15745 PF10719 R615_15745 R615_15750 PF00571 CBS domain R615_15755 PF13795 R615_15755 R615_15770 PF14224 R615_15770 R615_15775 PF00132 Bacterial transferase hexapeptide (six repeats) R615_15775 PF12804 MobA-like NTP transferase domain R615_15775 PF14602 Hexapeptide repeat of succinyl-transferase R615_15780 PF03321 GH3 auxin-responsive promoter R615_15795 PF13437 HlyD family secretion protein R615_15800 PF00873 AcrB/AcrD/AcrF family R615_15805 PF14219 R615_15805 R615_15810 PF10017 R615_15810 R615_15815 PF03781 Sulfatase-modifying factor enzyme 1 R615_15815 PF12867 DinB superfamily R615_15820 PF01297 Periplasmic solute binding protein family R615_15825 PF01475 Ferric uptake regulator family R615_15830 PF00005 ABC transporter R615_15835 PF00950 R615_15835 R615_15840 PF02630 SCO1/SenC R615_15845 PF01554 MatE R615_15875 PF11903 R615_15875 R615_15880 PF07690 Major Facilitator Superfamily R615_15885 PF03965 Penicillinase repressor R615_15890 PF05569 BlaR1 peptidase M56 R615_15895 PF02321 Outer membrane efflux protein R615_15900 PF13437 HlyD family secretion protein R615_15900 PF13533 Biotin-lipoyl like R615_15905 PF00873 AcrB/AcrD/AcrF family R615_15910 PF13795 R615_15910 R615_15925 PF01381 Helix-turn-helix R615_15935 PF00271 Helicase conserved C-terminal domain R615_15935 PF04851 Type III restriction enzyme, res subunit R615_15940 PF00892 EamA-like transporter family R615_15945 PF01554 MatE R615_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_15955 PF03466 LysR substrate binding domain R615_15960 PF01292 Prokaryotic cytochrome b561 R615_15965 PF04264 YceI-like domain R615_15970 PF10099 R615_15970 R615_15975 PF04542 Sigma-70 region 2 R615_15975 PF04545 Sigma-70, region 4 R615_15980 PF01258 Prokaryotic dksA/traR C4-type zinc finger R615_15985 PF02566 OsmC-like protein R615_15990 PF11845 R615_15990 R615_15995 PF00581 Rhodanese-like domain R615_16000 PF09600 R615_16000 R615_16005 PF08173 R615_16005 R615_16010 PF02322 R615_16010 R615_16015 PF01654 R615_16015 R615_16025 PF00563 EAL domain R615_16025 PF00990 GGDEF domain R615_16025 PF07793 R615_16025 R615_16030 PF16811 R615_16030 R615_16035 PF03480 Bacterial extracellular solute-binding protein, family 7 R615_16040 PF04290 R615_16040 R615_16045 PF06808 R615_16045 R615_16050 PF07859 alpha/beta hydrolase fold R615_16055 PF01196 Ribosomal protein L17 R615_16060 PF01000 RNA polymerase Rpb3/RpoA insert domain R615_16060 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain R615_16060 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain R615_16065 PF00163 Ribosomal protein S4/S9 N-terminal domain R615_16065 PF01479 S4 domain R615_16070 PF00411 Ribosomal protein S11 R615_16075 PF00416 Ribosomal protein S13/S18 R615_16080 PF00344 SecY translocase R615_16085 PF00828 Ribosomal protein L18e/L15 R615_16090 PF00327 Ribosomal protein L30p/L7e R615_16095 PF00333 Ribosomal protein S5, N-terminal domain R615_16095 PF03719 Ribosomal protein S5, C-terminal domain R615_16100 PF00861 Ribosomal L18p/L5e family R615_16105 PF00347 Ribosomal protein L6 R615_16110 PF00410 Ribosomal protein S8 R615_16115 PF00253 Ribosomal protein S14p/S29e R615_16120 PF00281 Ribosomal protein L5 R615_16120 PF00673 ribosomal L5P family C-terminus R615_16125 PF00467 KOW motif R615_16125 PF17136 R615_16125 R615_16130 PF00238 Ribosomal protein L14p/L23e R615_16135 PF00366 Ribosomal protein S17 R615_16140 PF00831 Ribosomal L29 protein R615_16145 PF00252 Ribosomal protein L16p/L10e R615_16150 PF00189 Ribosomal protein S3, C-terminal domain R615_16150 PF07650 KH domain R615_16155 PF00237 Ribosomal protein L22p/L17e R615_16160 PF00203 Ribosomal protein S19 R615_16165 PF00181 Ribosomal Proteins L2, RNA binding domain R615_16165 PF03947 Ribosomal Proteins L2, C-terminal domain R615_16170 PF00276 Ribosomal protein L23 R615_16175 PF00573 Ribosomal protein L4/L1 family R615_16180 PF00297 Ribosomal protein L3 R615_16185 PF00338 Ribosomal protein S10p/S20e R615_16190 PF00009 Elongation factor Tu GTP binding domain R615_16190 PF03143 Elongation factor Tu C-terminal domain R615_16190 PF03144 Elongation factor Tu domain 2 R615_16195 PF00009 Elongation factor Tu GTP binding domain R615_16195 PF00679 Elongation factor G C-terminus R615_16195 PF03144 Elongation factor Tu domain 2 R615_16195 PF03764 Elongation factor G, domain IV R615_16195 PF14492 Elongation Factor G, domain II R615_16200 PF00177 Ribosomal protein S7p/S5e R615_16205 PF00164 Ribosomal protein S12/S23 R615_16210 PF00623 RNA polymerase Rpb1, domain 2 R615_16210 PF04983 RNA polymerase Rpb1, domain 3 R615_16210 PF04997 RNA polymerase Rpb1, domain 1 R615_16210 PF04998 RNA polymerase Rpb1, domain 5 R615_16210 PF05000 RNA polymerase Rpb1, domain 4 R615_16215 PF00562 RNA polymerase Rpb2, domain 6 R615_16215 PF04560 RNA polymerase Rpb2, domain 7 R615_16215 PF04561 RNA polymerase Rpb2, domain 2 R615_16215 PF04563 RNA polymerase beta subunit R615_16215 PF04565 RNA polymerase Rpb2, domain 3 R615_16215 PF10385 RNA polymerase beta subunit external 1 domain R615_16220 PF00542 Ribosomal protein L7/L12 C-terminal domain R615_16220 PF16320 R615_16220 R615_16225 PF00466 Ribosomal protein L10 R615_16230 PF00687 Ribosomal protein L1p/L10e family R615_16235 PF00298 Ribosomal protein L11, RNA binding domain R615_16235 PF03946 Ribosomal protein L11, N-terminal domain R615_16240 PF00467 KOW motif R615_16240 PF02357 Transcription termination factor nusG R615_16245 PF00584 SecE/Sec61-gamma subunits of protein translocation complex R615_16255 PF00009 Elongation factor Tu GTP binding domain R615_16255 PF03143 Elongation factor Tu C-terminal domain R615_16255 PF03144 Elongation factor Tu domain 2 R615_16260 PF00009 Elongation factor Tu GTP binding domain R615_16260 PF00679 Elongation factor G C-terminus R615_16260 PF03144 Elongation factor Tu domain 2 R615_16260 PF03764 Elongation factor G, domain IV R615_16260 PF14492 Elongation Factor G, domain II R615_16265 PF00009 Elongation factor Tu GTP binding domain R615_16265 PF03143 Elongation factor Tu C-terminal domain R615_16265 PF03144 Elongation factor Tu domain 2 R615_16290 PF03309 Type III pantothenate kinase R615_16295 PF02237 Biotin protein ligase C terminal domain R615_16295 PF03099 Biotin/lipoate A/B protein ligase family R615_16295 PF08279 HTH domain R615_16300 PF00905 Penicillin binding protein transpeptidase domain R615_16300 PF00912 Transglycosylase R615_16300 PF06832 R615_16300 R615_16305 PF00207 Alpha-2-macroglobulin family R615_16305 PF01835 MG2 domain R615_16305 PF07703 Alpha-2-macroglobulin family N-terminal region R615_16305 PF10569 Alpha-macro-globulin thiol-ester bond-forming region R615_16305 PF11974 Alpha-2-macroglobulin MG1 domain R615_16315 PF00593 TonB dependent receptor R615_16315 PF07715 TonB-dependent Receptor Plug Domain R615_16325 PF07885 Ion channel R615_16330 PF00294 pfkB family carbohydrate kinase R615_16340 PF02690 R615_16340 R615_16350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain R615_16365 PF00501 AMP-binding enzyme R615_16370 PF08241 Methyltransferase domain R615_16380 PF06100 Streptococcal 67 kDa myosin-cross-reactive antigen like family R615_16385 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family R615_16395 PF00141 Peroxidase R615_16420 PF16261 R615_16420 R615_16425 PF00082 Subtilase family R615_16430 PF07484 Phage Tail Collar Domain R615_16435 PF07484 Phage Tail Collar Domain R615_16440 PF07484 Phage Tail Collar Domain R615_16445 PF13673 Acetyltransferase (GNAT) domain R615_16455 PF04055 Radical SAM superfamily R615_16455 PF06463 Molybdenum Cofactor Synthesis C R615_16455 PF13353 4Fe-4S single cluster domain R615_16460 PF12804 MobA-like NTP transferase domain R615_16465 PF00994 Probable molybdopterin binding domain R615_16470 PF01967 MoaC family R615_16475 PF02597 ThiS family R615_16480 PF02391 MoaE protein R615_16485 PF00437 Type II/IV secretion system protein R615_16490 PF00437 Type II/IV secretion system protein R615_16495 PF01168 Alanine racemase, N-terminal domain R615_16500 PF03807 NADP oxidoreductase coenzyme F420-dependent R615_16500 PF14748 Pyrroline-5-carboxylate reductase dimerisation R615_16505 PF02325 R615_16505 R615_16510 PF02594 Uncharacterised ACR, YggU family COG1872 R615_16515 PF00561 alpha/beta hydrolase fold R615_16520 PF07021 Methionine biosynthesis protein MetW R615_16525 PF14467 Domain of unknown function (DUF4426) R615_16530 PF01725 Ham1 family R615_16540 PF04055 Radical SAM superfamily R615_16540 PF06969 HemN C-terminal domain R615_16545 PF01734 Patatin-like phospholipase R615_16555 PF00696 Amino acid kinase family R615_16555 PF13840 ACT domain R615_16560 PF06339 R615_16560 R615_16565 PF00202 Aminotransferase class-III R615_16570 PF00583 Acetyltransferase (GNAT) family R615_16575 PF01047 MarR family R615_16580 PF00108 Thiolase, N-terminal domain R615_16580 PF02803 Thiolase, C-terminal domain R615_16585 PF00501 AMP-binding enzyme R615_16585 PF13193 AMP-binding enzyme C-terminal domain R615_16595 PF06850 R615_16595 R615_16600 PF06127 R615_16600 R615_16605 PF01554 MatE R615_16610 PF00497 Bacterial extracellular solute-binding proteins, family 3 R615_16615 PF04338 Protein of unknown function, DUF481 R615_16620 PF07813 LTXXQ motif family protein R615_16630 PF01553 Acyltransferase R615_16635 PF00291 Pyridoxal-phosphate dependent enzyme R615_16635 PF00585 C-terminal regulatory domain of Threonine dehydratase R615_16640 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) R615_16645 PF11739 R615_16645 R615_16650 PF00490 Delta-aminolevulinic acid dehydratase R615_16655 PF02503 Polyphosphate kinase middle domain R615_16655 PF13089 Polyphosphate kinase N-terminal domain R615_16655 PF13090 Polyphosphate kinase C-terminal domain R615_16660 PF02541 Ppx/GppA phosphatase family R615_16665 PF00085 Thioredoxin R615_16670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain R615_16670 PF07497 Rho termination factor, RNA-binding domain R615_16670 PF07498 Rho termination factor, N-terminal domain R615_16675 PF03480 Bacterial extracellular solute-binding protein, family 7 R615_16680 PF00580 UvrD/REP helicase N-terminal domain R615_16680 PF13361 UvrD-like helicase C-terminal domain R615_16685 PF01380 SIS domain R615_16685 PF01418 Helix-turn-helix domain, rpiR family R615_16695 PF00909 Ammonium Transporter Family R615_16700 PF00543 Nitrogen regulatory protein P-II R615_16705 PF09694 R615_16705 R615_16710 PF04380 R615_16710 R615_16715 PF00005 ABC transporter R615_16720 PF00005 ABC transporter R615_16720 PF12399 Branched-chain amino acid ATP-binding cassette transporter R615_16725 PF02653 R615_16725 R615_16730 PF02653 R615_16730 R615_16735 PF13433 Periplasmic binding protein domain R615_16740 PF00392 Bacterial regulatory proteins, gntR family R615_16740 PF07729 FCD domain R615_16745 PF01425 Amidase R615_16750 PF03098 Animal haem peroxidase R615_16765 PF00437 Type II/IV secretion system protein R615_16765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain R615_16770 PF01928 CYTH domain R615_16775 PF01546 Peptidase family M20/M25/M40 R615_16775 PF07687 Peptidase dimerisation domain R615_16780 PF00583 Acetyltransferase (GNAT) family R615_16780 PF00696 Amino acid kinase family R615_16785 PF08241 Methyltransferase domain R615_16790 PF01758 Sodium Bile acid symporter family R615_16820 PF00186 Dihydrofolate reductase R615_16825 PF00303 Thymidylate synthase R615_16830 PF01790 R615_16830 R615_16835 PF01925 R615_16835 R615_16840 PF05742 R615_16840 R615_16845 PF01471 Putative peptidoglycan binding domain R615_16845 PF03734 L,D-transpeptidase catalytic domain R615_16850 PF05951 R615_16850 R615_16855 PF00391 PEP-utilising enzyme, mobile domain R615_16855 PF01590 GAF domain R615_16855 PF02896 PEP-utilising enzyme, TIM barrel domain R615_16855 PF05524 PEP-utilising enzyme, N-terminal R615_16860 PF00293 NUDIX domain R615_16865 PF12710 haloacid dehalogenase-like hydrolase R615_16870 PF09375 Imelysin R615_16875 PF10672 S-adenosylmethionine-dependent methyltransferase R615_16880 PF08668 HDOD domain R615_16885 PF01494 FAD binding domain R615_16890 PF01494 FAD binding domain R615_16895 PF00557 Metallopeptidase family M24 R615_16895 PF05195 Aminopeptidase P, N-terminal domain R615_16900 PF03695 Uncharacterised protein family (UPF0149) R615_16910 PF05164 Cell division protein ZapA R615_16915 PF01812 5-formyltetrahydrofolate cyclo-ligase family R615_16925 PF01878 EVE domain R615_16930 PF07366 SnoaL-like polyketide cyclase R615_16935 PF12146 Putative lysophospholipase R615_16940 PF00120 Glutamine synthetase, catalytic domain R615_16940 PF03951 Glutamine synthetase, beta-Grasp domain R615_16945 PF00009 Elongation factor Tu GTP binding domain R615_16945 PF00679 Elongation factor G C-terminus R615_16945 PF03144 Elongation factor Tu domain 2 R615_16950 PF00497 Bacterial extracellular solute-binding proteins, family 3 R615_16960 PF00390 Malic enzyme, N-terminal domain R615_16960 PF03949 Malic enzyme, NAD binding domain R615_16965 PF00512 His Kinase A (phospho-acceptor) domain R615_16965 PF00672 HAMP domain R615_16965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_16970 PF00072 Response regulator receiver domain R615_16970 PF00486 Transcriptional regulatory protein, C terminal R615_16975 PF01594 R615_16975 R615_16985 PF03788 R615_16985 R615_16990 PF04172 R615_16990 R615_16995 PF00072 Response regulator receiver domain R615_16995 PF00512 His Kinase A (phospho-acceptor) domain R615_16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_16995 PF08448 PAS fold R615_17000 PF00293 NUDIX domain R615_17005 PF13419 Haloacid dehalogenase-like hydrolase R615_17010 PF01479 S4 domain R615_17015 PF01430 Hsp33 protein R615_17020 PF01293 Phosphoenolpyruvate carboxykinase R615_17025 PF00575 S1 RNA binding domain R615_17025 PF09371 Tex-like protein N-terminal domain R615_17025 PF12836 Helix-hairpin-helix motif R615_17025 PF16921 R615_17025 R615_17030 PF04262 Glutamate-cysteine ligase R615_17035 PF03748 R615_17035 R615_17040 PF02600 Disulfide bond formation protein DsbB R615_17045 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ R615_17050 PF13360 PQQ-like domain R615_17055 PF13511 R615_17055 R615_17060 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain R615_17075 PF00440 Bacterial regulatory proteins, tetR family R615_17080 PF00753 Metallo-beta-lactamase superfamily R615_17080 PF14863 Alkyl sulfatase dimerisation R615_17080 PF14864 Alkyl sulfatase C-terminal R615_17085 PF00561 alpha/beta hydrolase fold R615_17090 PF04304 R615_17090 R615_17130 PF09523 R615_17130 R615_17135 PF00005 ABC transporter R615_17135 PF12848 ABC transporter R615_17135 PF16326 R615_17135 R615_17150 PF02390 Putative methyltransferase R615_17155 PF04241 R615_17155 R615_17160 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase R615_17175 PF00924 Mechanosensitive ion channel R615_17175 PF05552 Conserved TM helix R615_17190 PF07219 R615_17190 R615_17195 PF04375 R615_17195 R615_17200 PF02602 Uroporphyrinogen-III synthase HemD R615_17205 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain R615_17205 PF03900 Porphobilinogen deaminase, C-terminal domain R615_17210 PF00072 Response regulator receiver domain R615_17210 PF04397 LytTr DNA-binding domain R615_17215 PF06580 R615_17215 R615_17220 PF00206 Lyase R615_17220 PF14698 Argininosuccinate lyase C-terminal R615_17240 PF01841 Transglutaminase-like superfamily R615_17240 PF08379 R615_17240 R615_17245 PF04168 R615_17245 R615_17245 PF14403 R615_17245 R615_17250 PF01841 Transglutaminase-like superfamily R615_17250 PF08379 R615_17250 R615_17250 PF09899 R615_17250 R615_17255 PF04168 R615_17255 R615_17260 PF14403 R615_17260 R615_17270 PF13379 NMT1-like family R615_17275 PF00563 EAL domain R615_17275 PF00990 GGDEF domain R615_17280 PF02560 Cyanate lyase C-terminal domain R615_17285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_17285 PF03466 LysR substrate binding domain R615_17290 PF00501 AMP-binding enzyme R615_17300 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain R615_17300 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain R615_17305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain R615_17305 PF02874 ATP synthase alpha/beta family, beta-barrel domain R615_17310 PF00231 ATP synthase R615_17315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain R615_17315 PF00306 ATP synthase alpha/beta chain, C terminal domain R615_17315 PF02874 ATP synthase alpha/beta family, beta-barrel domain R615_17320 PF00213 ATP synthase delta (OSCP) subunit R615_17325 PF00430 ATP synthase B/B' CF(0) R615_17330 PF00137 ATP synthase subunit C R615_17335 PF00119 ATP synthase A chain R615_17340 PF03899 R615_17340 R615_17350 PF02195 ParB-like nuclease domain R615_17355 PF13614 AAA domain R615_17360 PF02527 rRNA small subunit methyltransferase G R615_17365 PF06779 R615_17365 R615_17370 PF01292 Prokaryotic cytochrome b561 R615_17375 PF09086 Domain of unknown function (DUF1924) R615_17380 PF09626 Dihaem cytochrome c R615_17385 PF03413 Peptidase propeptide and YPEB domain R615_17390 PF00072 Response regulator receiver domain R615_17390 PF00486 Transcriptional regulatory protein, C terminal R615_17395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase R615_17400 PF01507 Phosphoadenosine phosphosulfate reductase family R615_17405 PF10070 R615_17405 R615_17410 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains R615_17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family R615_17415 PF03466 LysR substrate binding domain R615_17425 PF01381 Helix-turn-helix R615_17430 PF07804 HipA-like C-terminal domain R615_17435 PF01134 Glucose inhibited division protein A R615_17435 PF13932 GidA associated domain 3 R615_17445 PF00440 Bacterial regulatory proteins, tetR family R615_17450 PF10118 R615_17450 R615_17465 PF00145 C-5 cytosine-specific DNA methylase R615_17480 PF08378 R615_17480 R615_17480 PF09848 Uncharacterized conserved protein (DUF2075) R615_17480 PF13538 UvrD-like helicase C-terminal domain R615_17485 PF00271 Helicase conserved C-terminal domain R615_17490 PF09369 R615_17490 R615_17495 PF15515 MvaI/BcnI restriction endonuclease family R615_17500 PF01926 50S ribosome-binding GTPase R615_17500 PF10396 GTP-binding protein TrmE N-terminus R615_17500 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE R615_17505 PF02096 60Kd inner membrane protein R615_17505 PF14849 YidC periplasmic domain R615_17510 PF00825 Ribonuclease P R615_17515 PF00468 Ribosomal protein L34