R615_05745 9989fd331a43961b75275e73c9b21154 566 Gene3D G3DSA:3.40.50.300 2 341 1.5E-23 T 12-10-2018 R615_05745 9989fd331a43961b75275e73c9b21154 566 Pfam PF13175 AAA ATPase domain 3 321 4.2E-26 T 12-10-2018 R615_05745 9989fd331a43961b75275e73c9b21154 566 SUPERFAMILY SSF52540 2 342 2.16E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16140 5ed2cef8d97b4416a33043609e42cf3a 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.373 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16140 5ed2cef8d97b4416a33043609e42cf3a 63 Gene3D G3DSA:1.10.287.310 1 62 6.5E-27 T 12-10-2018 R615_16140 5ed2cef8d97b4416a33043609e42cf3a 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 12-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16140 5ed2cef8d97b4416a33043609e42cf3a 63 SUPERFAMILY SSF46561 1 61 6.8E-20 T 12-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16140 5ed2cef8d97b4416a33043609e42cf3a 63 Pfam PF00831 Ribosomal L29 protein 5 59 1.6E-22 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16140 5ed2cef8d97b4416a33043609e42cf3a 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.9E-22 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.0E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.0E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.0E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 Gene3D G3DSA:3.40.50.720 1 247 5.8E-79 T 12-10-2018 R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 186 0.0044 T 12-10-2018 R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 244 7.0E-59 T 12-10-2018 R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 247 2.8E-109 T 12-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 SUPERFAMILY SSF51735 3 247 3.5E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 3.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09170 638bf8a6b6dff6f440b1ef4f88a0f127 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.0E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_10515 e364edf6edf24a24506f7632ea1c5448 237 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 202 2.0E-63 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_10515 e364edf6edf24a24506f7632ea1c5448 237 PIRSF PIRSF006102 2 221 6.8E-75 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_10515 e364edf6edf24a24506f7632ea1c5448 237 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 212 26.706 T 12-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 R615_10515 e364edf6edf24a24506f7632ea1c5448 237 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 11 210 1.3E-80 T 12-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 R615_15020 f9dfbd8240d136043a88fdb243818930 517 Pfam PF13192 Thioredoxin domain 121 195 6.4E-11 T 12-10-2018 IPR012336 Thioredoxin-like fold R615_15020 f9dfbd8240d136043a88fdb243818930 517 Gene3D G3DSA:3.50.50.60 326 449 6.5E-106 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 314 332 2.8E-40 T 12-10-2018 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 441 457 2.8E-40 T 12-10-2018 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 467 489 2.8E-40 T 12-10-2018 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 216 235 2.8E-40 T 12-10-2018 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 374 2.8E-40 T 12-10-2018 R615_15020 f9dfbd8240d136043a88fdb243818930 517 Gene3D G3DSA:3.40.30.80 1 201 1.2E-63 T 12-10-2018 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 315 323 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 215 237 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 352 376 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 443 464 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 477 495 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 404 420 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 267 277 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 247 262 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 337 349 1.5E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 PIRSF PIRSF000238 1 517 4.6E-252 T 12-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 R615_15020 f9dfbd8240d136043a88fdb243818930 517 SUPERFAMILY SSF52833 107 197 4.31E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_15020 f9dfbd8240d136043a88fdb243818930 517 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 344 364 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 517 2.5E-241 T 12-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 R615_15020 f9dfbd8240d136043a88fdb243818930 517 SUPERFAMILY SSF52833 1 102 3.35E-26 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_15020 f9dfbd8240d136043a88fdb243818930 517 SUPERFAMILY SSF51905 207 513 1.04E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_15020 f9dfbd8240d136043a88fdb243818930 517 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 214 495 1.1E-44 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_15020 f9dfbd8240d136043a88fdb243818930 517 Gene3D G3DSA:3.50.50.60 214 507 6.5E-106 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_11920 0866397d086437fb31bda21dd77690fb 89 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 11 87 6.0E-31 T 12-10-2018 IPR019886 Sodium symporter small subunit, predicted R615_11920 0866397d086437fb31bda21dd77690fb 89 Pfam PF13937 Domain of unknown function (DUF4212) 9 86 1.5E-30 T 12-10-2018 IPR019886 Sodium symporter small subunit, predicted R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 Gene3D G3DSA:1.10.287.470 101 174 1.1E-104 T 12-10-2018 R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 SUPERFAMILY SSF111369 55 291 5.1E-76 T 12-10-2018 R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 Pfam PF00529 HlyD membrane-fusion protein of T1SS 287 353 1.2E-6 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 Gene3D G3DSA:2.40.50.100 66 210 1.1E-104 T 12-10-2018 R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 368 3.2E-86 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 286 1.5E-20 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 Gene3D G3DSA:2.40.420.20 297 366 1.1E-104 T 12-10-2018 R615_12285 8ffec12e7b1fcbe41b8ea8aaa1b19125 372 Gene3D G3DSA:2.40.30.170 54 296 1.1E-104 T 12-10-2018 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 Gene3D G3DSA:2.60.40.180 1 114 2.1E-40 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 4 114 2.9E-41 T 12-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 ProSitePatterns PS00768 Transthyretin signature 1. 9 24 - T 12-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 SUPERFAMILY SSF49472 2 114 2.88E-40 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 Pfam PF00576 HIUase/Transthyretin family 6 113 1.2E-36 T 12-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 SMART SM00095 1 113 0.0018 T 12-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 PRINTS PR00189 Transthyretin signature 37 62 2.6E-11 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 PRINTS PR00189 Transthyretin signature 63 92 2.6E-11 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_15455 74c9414d993c9c2b998458a9bf10099a 114 PRINTS PR00189 Transthyretin signature 5 25 2.6E-11 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 R615_09835 e58600bfb1f265d668201a2666bebe09 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 16 398 2.9E-189 T 12-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09835 e58600bfb1f265d668201a2666bebe09 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 62 387 5.7E-47 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme R615_09835 e58600bfb1f265d668201a2666bebe09 404 PIRSF PIRSF001413 2 404 1.1E-164 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09835 e58600bfb1f265d668201a2666bebe09 404 SUPERFAMILY SSF53686 12 397 9.43E-150 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme R615_09835 e58600bfb1f265d668201a2666bebe09 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 90 104 - T 12-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09835 e58600bfb1f265d668201a2666bebe09 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 11 400 51.65 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09835 e58600bfb1f265d668201a2666bebe09 404 Gene3D G3DSA:3.40.50.1100 63 393 4.7E-188 T 12-10-2018 R615_09835 e58600bfb1f265d668201a2666bebe09 404 Gene3D G3DSA:3.40.50.1100 19 215 4.7E-188 T 12-10-2018 R615_02900 b50ff05d5fad9bd2f476bc418cbffb33 176 Pfam PF13511 Domain of unknown function (DUF4124) 13 65 3.0E-6 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 R615_06565 a93979795b39c9eca5887935e3e942f8 230 Gene3D G3DSA:3.40.50.300 4 229 3.3E-44 T 12-10-2018 R615_06565 a93979795b39c9eca5887935e3e942f8 230 Pfam PF00005 ABC transporter 25 157 5.1E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_06565 a93979795b39c9eca5887935e3e942f8 230 SUPERFAMILY SSF52540 7 213 5.2E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06565 a93979795b39c9eca5887935e3e942f8 230 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_06565 a93979795b39c9eca5887935e3e942f8 230 SMART SM00382 34 203 1.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 SMART SM01086 769 858 2.5E-35 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Pfam PF07724 AAA domain (Cdc48 subfamily) 599 762 1.7E-55 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 SMART SM00382 198 343 1.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 SMART SM00382 600 741 5.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Gene3D G3DSA:1.10.8.60 769 861 1.3E-26 T 12-10-2018 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 SUPERFAMILY SSF52540 549 859 2.7E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 678 696 1.5E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 711 725 1.5E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 604 622 1.5E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 667 1.5E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 634 652 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 64 3.2E-11 T 12-10-2018 IPR004176 Clp, N-terminal R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 2.0E-10 T 12-10-2018 IPR004176 Clp, N-terminal R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 SUPERFAMILY SSF81923 4 156 3.04E-37 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Gene3D G3DSA:3.40.50.300 148 342 5.1E-74 T 12-10-2018 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 SUPERFAMILY SSF52540 159 548 1.22E-97 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 848 1.9E-23 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Gene3D G3DSA:3.40.50.300 553 767 4.4E-87 T 12-10-2018 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 319 6.8E-14 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Gene3D G3DSA:1.10.1780.10 1 147 1.3E-31 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 858 0.0 T 12-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 R615_06930 597d6075c2d8bd4034b9fa1ee4883aea 861 Gene3D G3DSA:3.40.50.300 343 547 1.2E-68 T 12-10-2018 R615_09570 1c5f4a54deca59db3bde651753c80954 393 Pfam PF05762 VWA domain containing CoxE-like protein 187 275 8.4E-8 T 12-10-2018 IPR008912 Uncharacterised protein family CoxE-like R615_13145 662b41864e115a22e405c34bd36f1bf9 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 4.6E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_13145 662b41864e115a22e405c34bd36f1bf9 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 4.6E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_13145 662b41864e115a22e405c34bd36f1bf9 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 4.6E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_13145 662b41864e115a22e405c34bd36f1bf9 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 4.6E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_13145 662b41864e115a22e405c34bd36f1bf9 137 Gene3D G3DSA:1.10.10.10 1 135 1.9E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_13145 662b41864e115a22e405c34bd36f1bf9 137 SMART SM00347 23 123 1.4E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_13145 662b41864e115a22e405c34bd36f1bf9 137 Pfam PF01047 MarR family 31 88 1.4E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_13145 662b41864e115a22e405c34bd36f1bf9 137 SUPERFAMILY SSF46785 3 136 1.43E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 SUPERFAMILY SSF81333 3 74 1.7E-17 T 12-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 72 13.156 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 Pfam PF00137 ATP synthase subunit C 8 70 4.7E-10 T 12-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 Gene3D G3DSA:1.20.20.10 1 75 7.6E-28 T 12-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 PRINTS PR00124 ATP synthase C subunit signature 47 72 2.9E-9 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 PRINTS PR00124 ATP synthase C subunit signature 30 45 2.9E-9 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 PRINTS PR00124 ATP synthase C subunit signature 9 28 2.9E-9 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 18 74 4.9E-27 T 12-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 R615_17330 ae24bb4894fc81c8cd87738eea6c1710 75 ProSitePatterns PS00605 ATP synthase c subunit signature. 37 58 - T 12-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 8.2E-49 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 1.7E-142 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 Gene3D G3DSA:3.40.50.720 160 311 6.0E-46 T 12-10-2018 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 PIRSF PIRSF000445 1 424 3.7E-155 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 6.8E-49 T 12-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 Gene3D G3DSA:3.30.460.30 2 156 5.4E-56 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 SUPERFAMILY SSF69742 1 156 1.44E-47 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 415 7.6E-24 T 12-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 30.655 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 SUPERFAMILY SSF69075 315 416 5.1E-27 T 12-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 R615_13240 4d12e636f0d36f00561a1e935ba2e684 425 SUPERFAMILY SSF51735 160 313 3.11E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_14165 463513c7e12f81d1b684a3630586ca64 494 PRINTS PR00095 Anthranilate synthase component I signature 339 352 2.8E-26 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_14165 463513c7e12f81d1b684a3630586ca64 494 PRINTS PR00095 Anthranilate synthase component I signature 325 338 2.8E-26 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_14165 463513c7e12f81d1b684a3630586ca64 494 PRINTS PR00095 Anthranilate synthase component I signature 419 433 2.8E-26 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_14165 463513c7e12f81d1b684a3630586ca64 494 PRINTS PR00095 Anthranilate synthase component I signature 434 448 2.8E-26 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_14165 463513c7e12f81d1b684a3630586ca64 494 SUPERFAMILY SSF56322 14 485 2.88E-155 T 12-10-2018 IPR005801 ADC synthase GO:0009058 R615_14165 463513c7e12f81d1b684a3630586ca64 494 Pfam PF04715 Anthranilate synthase component I, N terminal region 26 169 1.8E-33 T 12-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_14165 463513c7e12f81d1b684a3630586ca64 494 Gene3D G3DSA:3.60.120.10 1 492 1.6E-176 T 12-10-2018 IPR005801 ADC synthase GO:0009058 R615_14165 463513c7e12f81d1b684a3630586ca64 494 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 485 3.2E-170 T 12-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_14165 463513c7e12f81d1b684a3630586ca64 494 Pfam PF00425 chorismate binding enzyme 224 477 2.0E-95 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF04565 RNA polymerase Rpb2, domain 3 518 585 1.8E-29 T 12-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 SUPERFAMILY SSF64484 11 1357 0.0 T 12-10-2018 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:2.40.270.10 1051 1257 8.2E-87 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1357 12.297 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF00562 RNA polymerase Rpb2, domain 6 722 1279 2.8E-158 T 12-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF10385 RNA polymerase beta subunit external 1 domain 596 661 1.8E-20 T 12-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1080 1092 - T 12-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:3.90.1800.10 1267 1321 9.2E-11 T 12-10-2018 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF04561 RNA polymerase Rpb2, domain 2 156 230 4.0E-8 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF04561 RNA polymerase Rpb2, domain 2 354 459 8.1E-18 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:2.40.50.150 839 959 1.9E-42 T 12-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:2.40.270.10 795 838 3.5E-6 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:3.90.1100.10 645 718 1.5E-21 T 12-10-2018 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:3.90.1100.10 18 179 2.0E-57 T 12-10-2018 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:3.90.1100.10 445 632 2.3E-68 T 12-10-2018 R615_16215 37837c9220c91a6af20650a358a3b969 1358 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1354 0.0 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF04560 RNA polymerase Rpb2, domain 7 1281 1355 4.9E-27 T 12-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:3.90.1110.10 323 444 1.2E-35 T 12-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Gene3D G3DSA:2.40.50.100 719 793 7.3E-33 T 12-10-2018 R615_16215 37837c9220c91a6af20650a358a3b969 1358 Pfam PF04563 RNA polymerase beta subunit 26 504 7.5E-43 T 12-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_05625 1a90b5689a703d1be1540dec3454651a 302 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_05625 1a90b5689a703d1be1540dec3454651a 302 Gene3D G3DSA:3.40.50.300 28 288 8.3E-72 T 12-10-2018 R615_05625 1a90b5689a703d1be1540dec3454651a 302 SMART SM00382 58 238 3.2E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_05625 1a90b5689a703d1be1540dec3454651a 302 Pfam PF00005 ABC transporter 49 188 5.4E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_05625 1a90b5689a703d1be1540dec3454651a 302 SUPERFAMILY SSF52540 30 255 2.66E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06635 4b4be97b12fe613bc0f17aae3d9063f0 914 SUPERFAMILY SSF110296 213 533 1.73E-8 T 12-10-2018 R615_06635 4b4be97b12fe613bc0f17aae3d9063f0 914 Gene3D G3DSA:4.10.1080.10 14 112 3.5E-5 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_06635 4b4be97b12fe613bc0f17aae3d9063f0 914 SUPERFAMILY SSF103647 48 182 8.76E-5 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_06635 4b4be97b12fe613bc0f17aae3d9063f0 914 Gene3D G3DSA:2.120.10.10 312 550 3.9E-6 T 12-10-2018 R615_06635 4b4be97b12fe613bc0f17aae3d9063f0 914 SUPERFAMILY SSF50939 381 560 2.0E-13 T 12-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 Gene3D G3DSA:3.30.300.30 496 626 3.6E-23 T 12-10-2018 R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 Gene3D G3DSA:3.40.50.12780 29 493 3.9E-99 T 12-10-2018 R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 SUPERFAMILY SSF56801 3 622 9.29E-153 T 12-10-2018 R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 Pfam PF13193 AMP-binding enzyme C-terminal domain 509 588 1.0E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 55 5.4E-16 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 Pfam PF00501 AMP-binding enzyme 64 500 1.9E-81 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_09925 1c43ca62c09f1fcf91390660fed6c9e3 631 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_05380 630f94f7c018647ea20b49874e37e499 301 SUPERFAMILY SSF56059 98 288 2.09E-49 T 12-10-2018 R615_05380 630f94f7c018647ea20b49874e37e499 301 Gene3D G3DSA:3.30.470.80 182 299 3.8E-44 T 12-10-2018 R615_05380 630f94f7c018647ea20b49874e37e499 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 284 1.3E-87 T 12-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 R615_05380 630f94f7c018647ea20b49874e37e499 301 Gene3D G3DSA:3.30.1490.20 115 181 7.8E-27 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_05380 630f94f7c018647ea20b49874e37e499 301 Gene3D G3DSA:3.40.50.20 1 114 7.8E-40 T 12-10-2018 R615_05380 630f94f7c018647ea20b49874e37e499 301 Pfam PF08443 RimK-like ATP-grasp domain 98 285 8.6E-70 T 12-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 R615_05380 630f94f7c018647ea20b49874e37e499 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.444 T 12-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.701 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.8E-159 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 SUPERFAMILY SSF81271 279 360 2.62E-35 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 4.9E-38 T 12-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 Gene3D G3DSA:3.40.50.300 4 278 7.7E-150 T 12-10-2018 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 Gene3D G3DSA:3.10.20.30 48 361 7.7E-150 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 PIRSF PIRSF006641 1 363 2.1E-156 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 Pfam PF01926 50S ribosome-binding GTPase 5 119 1.3E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 7.7E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 7.7E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 7.7E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 7.7E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 Gene3D G3DSA:1.10.150.300 113 200 7.7E-150 T 12-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 R615_13280 ca2a8764ff90ee29d78179408bd54dc1 363 SUPERFAMILY SSF52540 3 301 2.34E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13195 dab565fad8658bb9aff215a50b50ba74 644 SUPERFAMILY SSF53822 245 639 1.82E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I R615_13195 dab565fad8658bb9aff215a50b50ba74 644 Gene3D G3DSA:3.40.50.2300 403 556 4.0E-72 T 12-10-2018 R615_13195 dab565fad8658bb9aff215a50b50ba74 644 Gene3D G3DSA:1.25.40.650 139 241 6.9E-15 T 12-10-2018 R615_13195 dab565fad8658bb9aff215a50b50ba74 644 Pfam PF04348 LppC putative lipoprotein 59 295 5.1E-40 T 12-10-2018 IPR007443 Penicillin-binding protein activator LpoA R615_13195 dab565fad8658bb9aff215a50b50ba74 644 Pfam PF04348 LppC putative lipoprotein 340 636 9.6E-76 T 12-10-2018 IPR007443 Penicillin-binding protein activator LpoA R615_13195 dab565fad8658bb9aff215a50b50ba74 644 Gene3D G3DSA:3.40.50.2300 244 313 3.4E-8 T 12-10-2018 R615_13195 dab565fad8658bb9aff215a50b50ba74 644 Gene3D G3DSA:3.40.50.2300 328 627 4.0E-72 T 12-10-2018 R615_04390 696fe878b0a7bcdd3d5a7d32831d86f6 612 Pfam PF00999 Sodium/hydrogen exchanger family 11 381 6.5E-63 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 R615_04390 696fe878b0a7bcdd3d5a7d32831d86f6 612 Gene3D G3DSA:1.20.1530.20 3 387 2.8E-80 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_04390 696fe878b0a7bcdd3d5a7d32831d86f6 612 Gene3D G3DSA:3.40.50.720 411 572 2.5E-37 T 12-10-2018 R615_04390 696fe878b0a7bcdd3d5a7d32831d86f6 612 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 291 1.1E-77 T 12-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 R615_04390 696fe878b0a7bcdd3d5a7d32831d86f6 612 Pfam PF02254 TrkA-N domain 414 525 8.3E-22 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 R615_04390 696fe878b0a7bcdd3d5a7d32831d86f6 612 SUPERFAMILY SSF51735 412 540 1.48E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 7 855 0.0 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Pfam PF01624 MutS domain I 8 119 1.5E-42 T 12-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 SUPERFAMILY SSF52540 567 796 3.19E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Gene3D G3DSA:1.10.1420.10 386 502 1.6E-96 T 12-10-2018 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 7 850 24.708 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 SUPERFAMILY SSF53150 114 266 4.71E-42 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Pfam PF05192 MutS domain III 270 558 6.6E-37 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Pfam PF05190 MutS family domain IV 427 517 3.9E-30 T 12-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Gene3D G3DSA:3.40.50.300 567 836 1.9E-98 T 12-10-2018 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Gene3D G3DSA:1.10.1420.10 266 558 1.6E-96 T 12-10-2018 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Pfam PF05188 MutS domain II 128 253 2.4E-25 T 12-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 SMART SM00534 606 793 2.3E-114 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Gene3D G3DSA:3.30.420.110 127 262 4.6E-36 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Pfam PF00488 MutS domain V 609 796 5.2E-84 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 SUPERFAMILY SSF55271 3 113 7.06E-42 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 SUPERFAMILY SSF48334 267 562 1.44E-85 T 12-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 SMART SM00533 283 590 5.8E-94 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 687 703 - T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 Gene3D G3DSA:3.40.1170.10 1 121 2.0E-51 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 R615_14710 869cf674583aac9c7cfe01cfdd598d3f 858 PIRSF PIRSF037677 1 835 1.1E-148 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 Gene3D G3DSA:3.40.50.300 205 378 2.5E-40 T 12-10-2018 R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 Pfam PF00271 Helicase conserved C-terminal domain 239 333 5.1E-17 T 12-10-2018 IPR001650 Helicase, C-terminal R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 SUPERFAMILY SSF52540 63 345 3.5E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 Pfam PF00270 DEAD/DEAH box helicase 25 185 7.4E-16 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 Pfam PF16124 RecQ zinc-binding 530 575 1.2E-7 T 12-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 137 146 - T 12-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 Gene3D G3DSA:3.40.50.300 2 204 4.2E-69 T 12-10-2018 R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 13 351 8.6E-108 T 12-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 SMART SM00490 252 334 1.7E-26 T 12-10-2018 IPR001650 Helicase, C-terminal R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 SMART SM00487 18 214 1.1E-24 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_01570 f6b0fa9e19b52f9123b49c9ff8d5f3bc 662 Gene3D G3DSA:1.10.10.10 517 662 9.5E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15355 b48865d2776b9e5b39b285a931226f5b 496 Gene3D G3DSA:3.40.50.720 2 209 1.6E-85 T 12-10-2018 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 Gene3D G3DSA:1.10.1040.10 210 495 4.2E-115 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 36 205 1.5E-59 T 12-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 36 368 3.6E-120 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 23 489 37.359 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 SUPERFAMILY SSF48179 211 370 1.7E-40 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 SUPERFAMILY SSF51735 30 210 1.74E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_15355 b48865d2776b9e5b39b285a931226f5b 496 SUPERFAMILY SSF48179 350 488 3.23E-43 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 211 343 1.7E-27 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 R615_15355 b48865d2776b9e5b39b285a931226f5b 496 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 359 486 2.4E-17 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 R615_09285 eaa1108a16581bd94101a3f10aa85070 215 Gene3D G3DSA:3.40.50.300 3 215 1.0E-64 T 12-10-2018 R615_09285 eaa1108a16581bd94101a3f10aa85070 215 Hamap MF_00165 Thymidylate kinase [tmk]. 9 215 29.993 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 R615_09285 eaa1108a16581bd94101a3f10aa85070 215 SUPERFAMILY SSF52540 6 214 7.43E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09285 eaa1108a16581bd94101a3f10aa85070 215 Pfam PF02223 Thymidylate kinase 13 206 1.0E-49 T 12-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 R615_09285 eaa1108a16581bd94101a3f10aa85070 215 ProSitePatterns PS01331 Thymidylate kinase signature. 99 111 - T 12-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 R615_09285 eaa1108a16581bd94101a3f10aa85070 215 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 6 206 1.3E-52 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 5 228 6.7E-83 T 12-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 Gene3D G3DSA:1.10.1060.10 106 236 1.7E-55 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 3 109 1.1E-29 T 12-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 SUPERFAMILY SSF54292 3 105 3.68E-26 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 Gene3D G3DSA:3.10.20.30 1 105 1.9E-31 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 SUPERFAMILY SSF46548 106 233 4.88E-39 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 R615_10005 7a19da0246821f8386d0d04beb88d9a7 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 4.2E-9 T 12-10-2018 R615_05805 2f294cdf3f2468b073f141f071bd7b5d 300 SUPERFAMILY SSF53850 40 275 5.31E-8 T 12-10-2018 R615_05805 2f294cdf3f2468b073f141f071bd7b5d 300 TIGRFAM TIGR02285 TIGR02285: conserved hypothetical protein 31 277 5.6E-45 T 12-10-2018 IPR011972 Conserved hypothetical protein CHP02285 R615_05945 58fd62c3232ec0ce2042898a4e62de84 155 TIGRFAM TIGR02944 suf_reg_Xantho: FeS assembly SUF system regulator 1 130 1.1E-44 T 12-10-2018 IPR014290 SUF system FeS cluster assembly regulator R615_05945 58fd62c3232ec0ce2042898a4e62de84 155 SUPERFAMILY SSF46785 3 133 9.94E-32 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_05945 58fd62c3232ec0ce2042898a4e62de84 155 Gene3D G3DSA:1.10.10.10 1 142 1.6E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05945 58fd62c3232ec0ce2042898a4e62de84 155 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 130 3.2E-28 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type R615_05945 58fd62c3232ec0ce2042898a4e62de84 155 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site R615_05945 58fd62c3232ec0ce2042898a4e62de84 155 Pfam PF02082 Transcriptional regulator 3 82 6.8E-19 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type R615_08920 52f111184af51cd236929bb1f667d0c2 143 SMART SM00422 1 70 1.1E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_08920 52f111184af51cd236929bb1f667d0c2 143 SUPERFAMILY SSF46955 1 115 4.4E-25 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_08920 52f111184af51cd236929bb1f667d0c2 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 6.5E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_08920 52f111184af51cd236929bb1f667d0c2 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 6.5E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_08920 52f111184af51cd236929bb1f667d0c2 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 6.5E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_08920 52f111184af51cd236929bb1f667d0c2 143 Gene3D G3DSA:1.10.1660.10 1 115 7.7E-25 T 12-10-2018 R615_08920 52f111184af51cd236929bb1f667d0c2 143 Pfam PF09278 MerR, DNA binding 45 107 6.4E-15 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding R615_07615 249e07f52e90aad35dea4f280c6ccd41 147 Pfam PF05117 Family of unknown function (DUF695) 5 136 2.8E-30 T 12-10-2018 IPR016097 Domain of unknown function DUF695 R615_06600 7156af24fea1d976d0c08956a4c62f0c 194 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 R615_06600 7156af24fea1d976d0c08956a4c62f0c 194 SUPERFAMILY SSF51161 40 176 7.76E-36 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_06600 7156af24fea1d976d0c08956a4c62f0c 194 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 126 158 2.9E-10 T 12-10-2018 IPR001451 Hexapeptide repeat R615_06600 7156af24fea1d976d0c08956a4c62f0c 194 Gene3D G3DSA:2.160.10.10 79 192 3.7E-29 T 12-10-2018 R615_06600 7156af24fea1d976d0c08956a4c62f0c 194 PIRSF PIRSF000441 3 193 3.1E-49 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 R615_08685 ddb698a4219ded87f42956e33633164f 456 SUPERFAMILY SSF51735 2 114 2.56E-13 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08685 ddb698a4219ded87f42956e33633164f 456 SUPERFAMILY SSF75615 115 210 1.7E-20 T 12-10-2018 R615_08685 ddb698a4219ded87f42956e33633164f 456 SUPERFAMILY SSF53790 214 455 3.14E-79 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 R615_08685 ddb698a4219ded87f42956e33633164f 456 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 426 1.5E-50 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 R615_08685 ddb698a4219ded87f42956e33633164f 456 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 205 4.7E-46 T 12-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_08685 ddb698a4219ded87f42956e33633164f 456 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 450 9.6E-91 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_08685 ddb698a4219ded87f42956e33633164f 456 Pfam PF13241 Putative NAD(P)-binding 6 116 5.9E-22 T 12-10-2018 R615_08685 ddb698a4219ded87f42956e33633164f 456 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 295 328 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_08685 ddb698a4219ded87f42956e33633164f 456 PIRSF PIRSF036426 1 456 3.3E-174 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_08685 ddb698a4219ded87f42956e33633164f 456 Gene3D G3DSA:3.40.50.720 1 113 8.1E-23 T 12-10-2018 R615_08685 ddb698a4219ded87f42956e33633164f 456 Gene3D G3DSA:3.30.160.110 114 149 9.9E-15 T 12-10-2018 R615_08685 ddb698a4219ded87f42956e33633164f 456 Gene3D G3DSA:3.30.950.10 331 456 2.1E-46 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 R615_08685 ddb698a4219ded87f42956e33633164f 456 Gene3D G3DSA:3.40.1010.10 213 330 1.0E-44 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 R615_08685 ddb698a4219ded87f42956e33633164f 456 Pfam PF10414 Sirohaem synthase dimerisation region 152 207 1.7E-11 T 12-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_08685 ddb698a4219ded87f42956e33633164f 456 Pfam PF14824 Sirohaem biosynthesis protein central 120 146 2.2E-7 T 12-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Gene3D G3DSA:3.40.1110.10 527 636 1.3E-66 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Gene3D G3DSA:3.30.70.100 104 189 2.6E-14 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 237 806 1.1E-152 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Gene3D G3DSA:2.70.150.20 311 424 1.9E-31 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 SUPERFAMILY SSF56784 516 804 6.46E-48 T 12-10-2018 IPR036412 HAD-like superfamily R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 SUPERFAMILY SSF55008 99 174 3.8E-18 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 255 806 3.2E-162 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Pfam PF00403 Heavy-metal-associated domain 107 168 7.2E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 281 808 1.3E-113 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 SUPERFAMILY SSF81665 283 778 9.02E-10 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 519 525 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 291 782 6.5E-73 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Pfam PF00122 E1-E2 ATPase 328 496 2.7E-48 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 SUPERFAMILY SSF81653 329 419 8.5E-23 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Pfam PF00702 haloacid dehalogenase-like hydrolase 515 718 4.1E-31 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 13 100 3.4E-24 T 12-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 704 723 2.6E-23 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 727 739 2.6E-23 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 369 383 2.6E-23 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 517 531 2.6E-23 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 651 661 2.6E-23 T 12-10-2018 R615_07710 1924f3f42bd295543caeddcb360b2cbc 817 Gene3D G3DSA:3.40.50.1000 497 741 1.3E-66 T 12-10-2018 IPR023214 HAD superfamily R615_16790 a45a34b29a44c37990a0a3a0f2039aa2 294 Gene3D G3DSA:1.20.1530.20 1 289 1.6E-68 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_16790 a45a34b29a44c37990a0a3a0f2039aa2 294 Pfam PF01758 Sodium Bile acid symporter family 11 194 6.0E-26 T 12-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 R615_12925 f077897ecedf42683f54ce07aec3d4be 188 Pfam PF08274 PhnA Zinc-Ribbon 13 53 5.5E-8 T 12-10-2018 IPR013987 PhnA protein, N-terminal R615_12925 f077897ecedf42683f54ce07aec3d4be 188 Gene3D G3DSA:2.30.30.40 119 188 9.0E-26 T 12-10-2018 R615_12925 f077897ecedf42683f54ce07aec3d4be 188 SUPERFAMILY SSF82057 118 188 6.87E-22 T 12-10-2018 R615_12925 f077897ecedf42683f54ce07aec3d4be 188 Pfam PF03831 PhnA domain 123 188 7.9E-24 T 12-10-2018 IPR013988 PhnA protein, C-terminal R615_12925 f077897ecedf42683f54ce07aec3d4be 188 SMART SM00782 6 53 4.6E-18 T 12-10-2018 IPR013991 PhnA protein N-terminal, proteobacterial R615_02520 26e0da5908f7c8093823a238265c46d2 388 Gene3D G3DSA:3.30.930.10 5 336 9.9E-66 T 12-10-2018 R615_02520 26e0da5908f7c8093823a238265c46d2 388 PIRSF PIRSF001549 7 379 2.8E-41 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 R615_02520 26e0da5908f7c8093823a238265c46d2 388 SUPERFAMILY SSF55681 7 324 3.08E-53 T 12-10-2018 R615_02520 26e0da5908f7c8093823a238265c46d2 388 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 376 28.047 T 12-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 R615_02520 26e0da5908f7c8093823a238265c46d2 388 Pfam PF13393 Histidyl-tRNA synthetase 12 323 2.6E-108 T 12-10-2018 R615_05855 bbe6476ba0e2aaef1759ff801f436bb8 371 SUPERFAMILY SSF111331 73 140 6.1E-7 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily R615_05855 bbe6476ba0e2aaef1759ff801f436bb8 371 PIRSF PIRSF016907 1 371 2.9E-125 T 12-10-2018 IPR011386 Putative ATP-NAD kinase R615_05855 bbe6476ba0e2aaef1759ff801f436bb8 371 Pfam PF01513 ATP-NAD kinase 5 364 8.6E-42 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Gene3D G3DSA:3.30.1370.120 184 257 1.3E-18 T 12-10-2018 IPR038591 NolW-like superfamily R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 27 594 1.8E-161 T 12-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Pfam PF00263 Bacterial type II and III secretion system protein 421 584 1.4E-50 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 PRINTS PR00811 Bacterial general secretion pathway protein D signature 452 462 3.5E-35 T 12-10-2018 IPR001775 GspD/PilQ family R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 PRINTS PR00811 Bacterial general secretion pathway protein D signature 549 567 3.5E-35 T 12-10-2018 IPR001775 GspD/PilQ family R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 PRINTS PR00811 Bacterial general secretion pathway protein D signature 417 441 3.5E-35 T 12-10-2018 IPR001775 GspD/PilQ family R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 PRINTS PR00811 Bacterial general secretion pathway protein D signature 572 586 3.5E-35 T 12-10-2018 IPR001775 GspD/PilQ family R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 PRINTS PR00811 Bacterial general secretion pathway protein D signature 338 348 3.5E-35 T 12-10-2018 IPR001775 GspD/PilQ family R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Gene3D G3DSA:3.30.1370.120 264 336 2.0E-15 T 12-10-2018 IPR038591 NolW-like superfamily R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Gene3D G3DSA:3.30.1370.120 18 180 8.1E-52 T 12-10-2018 IPR038591 NolW-like superfamily R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Pfam PF03958 Bacterial type II/III secretion system short domain 122 181 1.8E-8 T 12-10-2018 IPR005644 NolW-like R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Pfam PF03958 Bacterial type II/III secretion system short domain 266 338 2.0E-16 T 12-10-2018 IPR005644 NolW-like R615_14355 428f800bb0a1c2dffe39c02183e7cf63 631 Pfam PF03958 Bacterial type II/III secretion system short domain 186 258 1.1E-15 T 12-10-2018 IPR005644 NolW-like R615_00400 e064c371eea6016c575ce68a89d0ea82 930 TIGRFAM TIGR00593 pola: DNA polymerase I 7 930 1.4E-293 T 12-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SMART SM00474 332 519 1.1E-41 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Gene3D G3DSA:1.20.1060.10 546 660 8.1E-40 T 12-10-2018 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 815 826 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 732 745 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 877 890 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 847 863 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 680 695 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 756 781 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 702 725 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 793 804 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 PRINTS PR00868 DNA-polymerase family A (pol I) signature 657 679 1.2E-81 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Gene3D G3DSA:1.10.150.20 171 250 3.9E-95 T 12-10-2018 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 167 1.1E-54 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SMART SM00279 170 205 7.1E-13 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SMART SM00482 688 894 3.6E-119 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Pfam PF01612 3'-5' exonuclease 332 519 4.8E-39 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SUPERFAMILY SSF56672 524 930 5.89E-159 T 12-10-2018 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Gene3D G3DSA:1.10.150.20 711 854 1.5E-113 T 12-10-2018 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Gene3D G3DSA:3.30.420.10 329 543 6.8E-72 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SMART SM00475 4 265 6.8E-126 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 168 266 1.5E-30 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Pfam PF00476 DNA polymerase family A 552 927 1.3E-157 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SUPERFAMILY SSF53098 335 520 5.91E-56 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_00400 e064c371eea6016c575ce68a89d0ea82 930 ProSitePatterns PS00447 DNA polymerase family A signature. 756 775 - T 12-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Gene3D G3DSA:3.40.50.1010 7 281 3.9E-95 T 12-10-2018 R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SUPERFAMILY SSF47807 168 288 4.78E-30 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily R615_00400 e064c371eea6016c575ce68a89d0ea82 930 SUPERFAMILY SSF88723 4 167 1.37E-54 T 12-10-2018 IPR029060 PIN-like domain superfamily R615_00400 e064c371eea6016c575ce68a89d0ea82 930 Gene3D G3DSA:3.30.70.370 666 926 1.5E-113 T 12-10-2018 R615_00315 0a1f505b7353516d228f9ad681612913 554 SUPERFAMILY SSF103473 6 216 1.1E-6 T 12-10-2018 IPR036259 MFS transporter superfamily R615_00315 0a1f505b7353516d228f9ad681612913 554 Gene3D G3DSA:1.20.1250.20 3 199 1.3E-6 T 12-10-2018 R615_00315 0a1f505b7353516d228f9ad681612913 554 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 295 308 - T 12-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_00315 0a1f505b7353516d228f9ad681612913 554 Pfam PF01564 Spermine/spermidine synthase domain 383 489 1.5E-10 T 12-10-2018 R615_00315 0a1f505b7353516d228f9ad681612913 554 Pfam PF01564 Spermine/spermidine synthase domain 275 353 7.5E-15 T 12-10-2018 R615_00315 0a1f505b7353516d228f9ad681612913 554 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 217 516 22.65 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_00315 0a1f505b7353516d228f9ad681612913 554 SUPERFAMILY SSF53335 223 524 3.8E-57 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_05935 c487e835a40b86095144aecec98484b6 252 SUPERFAMILY SSF52540 2 231 1.56E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05935 c487e835a40b86095144aecec98484b6 252 Gene3D G3DSA:3.40.50.300 1 248 1.8E-61 T 12-10-2018 R615_05935 c487e835a40b86095144aecec98484b6 252 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 3 244 6.3E-109 T 12-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 R615_05935 c487e835a40b86095144aecec98484b6 252 Pfam PF00005 ABC transporter 17 172 1.6E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_05935 c487e835a40b86095144aecec98484b6 252 SMART SM00382 26 223 1.3E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_07220 b103ff9b6e546bece7c7426e140ff774 199 Gene3D G3DSA:2.10.109.10 80 199 5.6E-44 T 12-10-2018 R615_07220 b103ff9b6e546bece7c7426e140ff774 199 SUPERFAMILY SSF51306 75 197 2.35E-35 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily R615_07220 b103ff9b6e546bece7c7426e140ff774 199 SUPERFAMILY SSF46785 3 70 3.84E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_07220 b103ff9b6e546bece7c7426e140ff774 199 Gene3D G3DSA:1.10.10.10 1 70 4.8E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_07220 b103ff9b6e546bece7c7426e140ff774 199 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 3.4E-9 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 R615_07220 b103ff9b6e546bece7c7426e140ff774 199 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 3.4E-9 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 R615_07220 b103ff9b6e546bece7c7426e140ff774 199 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 3.4E-9 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 R615_07220 b103ff9b6e546bece7c7426e140ff774 199 Hamap MF_00015 LexA repressor [lexA]. 3 199 33.001 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 R615_07220 b103ff9b6e546bece7c7426e140ff774 199 TIGRFAM TIGR00498 lexA: repressor LexA 1 198 4.7E-75 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 R615_07220 b103ff9b6e546bece7c7426e140ff774 199 Pfam PF00717 Peptidase S24-like 114 180 1.0E-14 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C R615_07220 b103ff9b6e546bece7c7426e140ff774 199 Pfam PF01726 LexA DNA binding domain 1 65 1.4E-30 T 12-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 234 1.0E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 SUPERFAMILY SSF47203 245 401 2.74E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 SUPERFAMILY SSF56645 1 259 9.29E-66 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 Gene3D G3DSA:1.10.540.10 1 131 4.1E-54 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 Gene3D G3DSA:1.20.140.10 247 407 1.0E-36 T 12-10-2018 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 246 395 2.8E-33 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 129 6.7E-17 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_00200 8a81c5ed75c3a5afb78cfcdbde8a5821 407 Gene3D G3DSA:2.40.110.10 132 246 6.2E-41 T 12-10-2018 R615_09875 99fabe1d40a44e4c3e4cd070f12e9e5c 214 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 2 196 1.2E-82 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 R615_09875 99fabe1d40a44e4c3e4cd070f12e9e5c 214 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 43.558 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 R615_09875 99fabe1d40a44e4c3e4cd070f12e9e5c 214 SUPERFAMILY SSF52016 3 205 1.86E-60 T 12-10-2018 R615_09875 99fabe1d40a44e4c3e4cd070f12e9e5c 214 Pfam PF00694 Aconitase C-terminal domain 3 132 4.5E-35 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 R615_09875 99fabe1d40a44e4c3e4cd070f12e9e5c 214 Gene3D G3DSA:3.20.19.10 1 188 4.5E-76 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 R615_12495 f72c4fb5870492cb046671cc0ac103da 224 Gene3D G3DSA:2.60.40.790 90 224 1.0E-15 T 12-10-2018 IPR008978 HSP20-like chaperone R615_12495 f72c4fb5870492cb046671cc0ac103da 224 SUPERFAMILY SSF49764 131 223 3.84E-9 T 12-10-2018 IPR008978 HSP20-like chaperone R615_12495 f72c4fb5870492cb046671cc0ac103da 224 Pfam PF00011 Hsp20/alpha crystallin family 139 223 1.7E-6 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain R615_04115 5ffd3808d8f8aa954be4d014fb476e2e 814 Gene3D G3DSA:3.40.50.970 65 418 1.2E-59 T 12-10-2018 R615_04115 5ffd3808d8f8aa954be4d014fb476e2e 814 Gene3D G3DSA:3.40.50.970 434 641 1.2E-39 T 12-10-2018 R615_04115 5ffd3808d8f8aa954be4d014fb476e2e 814 SUPERFAMILY SSF52518 97 377 1.93E-19 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_04115 5ffd3808d8f8aa954be4d014fb476e2e 814 Pfam PF09364 XFP N-terminal domain 81 362 9.8E-11 T 12-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal R615_04115 5ffd3808d8f8aa954be4d014fb476e2e 814 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 440 609 2.7E-42 T 12-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 R615_04115 5ffd3808d8f8aa954be4d014fb476e2e 814 SUPERFAMILY SSF52518 432 623 5.24E-6 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_00610 901f02af82041c0450f92cd2027bd973 316 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 3 305 36.782 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 R615_00610 901f02af82041c0450f92cd2027bd973 316 Gene3D G3DSA:3.10.25.10 208 309 1.1E-31 T 12-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_00610 901f02af82041c0450f92cd2027bd973 316 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_00610 901f02af82041c0450f92cd2027bd973 316 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 3 306 4.1E-99 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 R615_00610 901f02af82041c0450f92cd2027bd973 316 Pfam PF02911 Formyl transferase, C-terminal domain 205 302 2.4E-29 T 12-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_00610 901f02af82041c0450f92cd2027bd973 316 Gene3D G3DSA:3.40.50.170 1 207 1.0E-79 T 12-10-2018 R615_00610 901f02af82041c0450f92cd2027bd973 316 SUPERFAMILY SSF50486 206 306 8.48E-32 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 R615_00610 901f02af82041c0450f92cd2027bd973 316 SUPERFAMILY SSF53328 3 208 1.09E-65 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_00610 901f02af82041c0450f92cd2027bd973 316 Pfam PF00551 Formyl transferase 4 181 3.7E-47 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_08095 599d267c3d96122b3b502e564da635cf 504 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 467 2.6E-129 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 R615_08095 599d267c3d96122b3b502e564da635cf 504 SUPERFAMILY SSF48163 313 470 4.84E-30 T 12-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 R615_08095 599d267c3d96122b3b502e564da635cf 504 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.3E-22 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08095 599d267c3d96122b3b502e564da635cf 504 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.3E-22 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08095 599d267c3d96122b3b502e564da635cf 504 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.3E-22 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08095 599d267c3d96122b3b502e564da635cf 504 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 202 1.3E-22 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08095 599d267c3d96122b3b502e564da635cf 504 PRINTS PR00987 Glutamyl-tRNA synthetase signature 208 216 1.3E-22 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08095 599d267c3d96122b3b502e564da635cf 504 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 319 4.0E-108 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 R615_08095 599d267c3d96122b3b502e564da635cf 504 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_08095 599d267c3d96122b3b502e564da635cf 504 SUPERFAMILY SSF52374 3 307 2.36E-109 T 12-10-2018 R615_08095 599d267c3d96122b3b502e564da635cf 504 Gene3D G3DSA:1.10.10.350 370 493 2.2E-21 T 12-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 R615_08095 599d267c3d96122b3b502e564da635cf 504 Gene3D G3DSA:3.40.50.620 1 328 2.1E-142 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08095 599d267c3d96122b3b502e564da635cf 504 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 470 29.256 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 R615_04550 adccafd229d2d7a268cc9bb568e899e1 521 SUPERFAMILY SSF51735 385 510 1.29E-14 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04550 adccafd229d2d7a268cc9bb568e899e1 521 Gene3D G3DSA:1.20.1530.20 3 363 3.4E-47 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_04550 adccafd229d2d7a268cc9bb568e899e1 521 Gene3D G3DSA:3.40.50.720 380 518 1.2E-25 T 12-10-2018 R615_04550 adccafd229d2d7a268cc9bb568e899e1 521 Pfam PF02254 TrkA-N domain 385 500 6.1E-17 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 R615_04550 adccafd229d2d7a268cc9bb568e899e1 521 Pfam PF00999 Sodium/hydrogen exchanger family 4 347 4.5E-36 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 R615_05520 61b2da2926d83956f1155999991c14e4 256 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 2 254 8.5E-93 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 R615_05520 61b2da2926d83956f1155999991c14e4 256 Gene3D G3DSA:2.160.10.10 1 188 6.8E-55 T 12-10-2018 R615_05520 61b2da2926d83956f1155999991c14e4 256 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 174 255 1.7E-23 T 12-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 R615_05520 61b2da2926d83956f1155999991c14e4 256 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 256 41.176 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 R615_05520 61b2da2926d83956f1155999991c14e4 256 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 2 30 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 R615_05520 61b2da2926d83956f1155999991c14e4 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 46 4.0E-9 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05520 61b2da2926d83956f1155999991c14e4 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 102 131 4.6E-4 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05520 61b2da2926d83956f1155999991c14e4 256 Gene3D G3DSA:1.20.1180.10 191 256 1.3E-20 T 12-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 R615_05520 61b2da2926d83956f1155999991c14e4 256 SUPERFAMILY SSF51161 1 256 2.95E-78 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_05520 61b2da2926d83956f1155999991c14e4 256 PIRSF PIRSF000456 1 256 2.4E-96 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF55874 1 148 3.41E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.40.50.2300 122 260 6.3E-26 T 12-10-2018 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF01627 Hpt domain 452 531 1.3E-6 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF55073 818 976 1.73E-47 T 12-10-2018 IPR029787 Nucleotide cyclase R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:1.20.120.160 417 541 2.0E-19 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF00563 EAL domain 990 1224 4.3E-72 T 12-10-2018 IPR001633 EAL domain R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.40.50.12330 262 327 2.8E-20 T 12-10-2018 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF55785 680 800 3.26E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF00990 Diguanylate cyclase, GGDEF domain 813 969 1.7E-48 T 12-10-2018 IPR000160 GGDEF domain R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.30.565.10 1 117 4.0E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF47226 413 535 2.49E-18 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SMART SM00448 271 387 7.8E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SMART SM00448 558 671 1.3E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SMART SM00448 129 247 2.3E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 811 972 3.9E-42 T 12-10-2018 IPR000160 GGDEF domain R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF52172 127 251 7.12E-25 T 12-10-2018 IPR011006 CheY-like superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SMART SM00267 802 974 1.4E-64 T 12-10-2018 IPR000160 GGDEF domain R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.20.20.450 988 1236 1.5E-95 T 12-10-2018 IPR035919 EAL domain superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF00072 Response regulator receiver domain 131 246 2.6E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF00072 Response regulator receiver domain 560 671 1.5E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF00072 Response regulator receiver domain 273 384 2.7E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1 111 1.7E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF52172 271 392 1.85E-35 T 12-10-2018 IPR011006 CheY-like superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.40.50.2300 328 400 7.4E-16 T 12-10-2018 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF141868 989 1235 2.75E-85 T 12-10-2018 IPR035919 EAL domain superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 96 109 5.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 37 51 5.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 55 65 5.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 PRINTS PR00344 Bacterial sensor protein C-terminal signature 72 90 5.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SUPERFAMILY SSF52172 557 692 2.7E-35 T 12-10-2018 IPR011006 CheY-like superfamily R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SMART SM00052 984 1229 1.1E-113 T 12-10-2018 IPR001633 EAL domain R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.30.450.20 689 758 4.0E-12 T 12-10-2018 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.40.50.2300 546 688 1.6E-33 T 12-10-2018 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 Gene3D G3DSA:3.30.70.270 807 987 2.6E-56 T 12-10-2018 R615_01095 a5f0362f817317c309b274cc74c83d7d 1240 SMART SM00387 1 112 3.1E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 12-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 Gene3D G3DSA:3.20.20.70 1 336 1.3E-149 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 SUPERFAMILY SSF51569 7 335 1.88E-146 T 12-10-2018 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 3.9E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 3.9E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 3.9E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 3.9E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 3.9E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 308 327 3.9E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 PIRSF PIRSF001415 3 336 9.5E-151 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 SMART SM01004 10 334 4.7E-245 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_16650 52b6a1eef9bd75535a9113060ea7486c 336 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 333 1.3E-142 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 SMART SM01230 106 366 3.7E-90 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 SUPERFAMILY SSF54368 11 98 6.02E-13 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 Gene3D G3DSA:3.30.590.10 110 456 3.7E-109 T 12-10-2018 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 Pfam PF00120 Glutamine synthetase, catalytic domain 108 452 1.5E-96 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 14 453 1.5E-193 T 12-10-2018 IPR017536 Glutamine synthetase, type III R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 SUPERFAMILY SSF55931 107 452 2.55E-96 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 Gene3D G3DSA:3.10.20.70 7 105 1.7E-5 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_05635 e6297c2b5ecd2697c25668448d5a78fc 456 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 237 252 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 SUPERFAMILY SSF53732 403 913 6.15E-71 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Gene3D G3DSA:3.30.499.10 430 567 3.1E-110 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Pfam PF11791 Aconitate B N-terminal domain 7 162 4.3E-39 T 12-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 SUPERFAMILY SSF52016 169 394 4.91E-32 T 12-10-2018 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 SUPERFAMILY SSF74778 3 164 5.36E-38 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Gene3D G3DSA:3.40.1060.10 422 717 3.1E-110 T 12-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Gene3D G3DSA:3.30.499.10 732 820 9.6E-8 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Gene3D G3DSA:3.30.499.10 831 919 6.7E-17 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Pfam PF06434 Aconitate hydratase 2 N-terminus 176 406 2.4E-59 T 12-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Pfam PF00330 Aconitase family (aconitate hydratase) 410 894 3.8E-60 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Gene3D G3DSA:1.25.40.310 3 166 3.2E-46 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 R615_07965 5f911ebf5f94c07f3a704375abf3a900 931 Gene3D G3DSA:3.20.19.10 168 385 6.7E-31 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 SMART SM00487 23 224 1.7E-62 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 Pfam PF00270 DEAD/DEAH box helicase 29 195 7.5E-48 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 4 456 49.253 T 12-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 SUPERFAMILY SSF52540 76 359 1.2E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 Pfam PF00271 Helicase conserved C-terminal domain 233 341 2.5E-26 T 12-10-2018 IPR001650 Helicase, C-terminal R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 Gene3D G3DSA:3.40.50.300 215 375 5.1E-46 T 12-10-2018 R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 Gene3D G3DSA:3.40.50.300 2 212 2.0E-77 T 12-10-2018 R615_13705 29c7e460e45749a5039c1a3cd673b0a9 466 SMART SM00490 260 341 2.5E-31 T 12-10-2018 IPR001650 Helicase, C-terminal R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 Gene3D G3DSA:3.30.390.30 352 478 2.3E-48 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PIRSF PIRSF000350 1 472 2.7E-84 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 Gene3D G3DSA:3.50.50.60 163 284 2.6E-117 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.5E-38 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 1.5E-38 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-38 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 1.5E-38 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 1.5E-38 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 1.7E-67 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 SUPERFAMILY SSF55424 349 472 1.65E-42 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 SUPERFAMILY SSF51905 1 344 1.05E-61 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 462 1.8E-39 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 471 1.3E-159 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 46 56 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 Gene3D G3DSA:3.50.50.60 5 341 2.6E-117 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 3.0E-77 T 12-10-2018 R615_09990 ff4ff40a7e39c28c25bd78da16f6d325 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 3.0E-77 T 12-10-2018 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 23 454 2.1E-178 T 12-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 22 457 60.125 T 12-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 Gene3D G3DSA:2.40.50.140 397 460 5.3E-20 T 12-10-2018 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 161 181 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 Pfam PF00919 Uncharacterized protein family UPF0004 23 109 6.2E-22 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 Gene3D G3DSA:3.40.50.12160 23 145 4.3E-29 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 SUPERFAMILY SSF102114 131 387 2.88E-48 T 12-10-2018 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 Gene3D G3DSA:3.80.30.20 155 396 1.2E-70 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 23 455 3.4E-104 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 SMART SM00729 157 382 2.2E-51 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_07810 abf38ff7bc34936b4e54fff0185e969d 460 Pfam PF04055 Radical SAM superfamily 163 340 7.2E-27 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 Pfam PF00312 Ribosomal protein S15 8 88 5.1E-37 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 SUPERFAMILY SSF47060 3 89 6.18E-36 T 12-10-2018 IPR009068 S15/NS1, RNA-binding R615_04065 5a6a190fb25067d08517bbde6261deb2 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 1.2E-38 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 1.0E-23 T 12-10-2018 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 SMART SM01387 8 88 3.9E-52 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 Gene3D G3DSA:1.10.287.10 2 89 1.8E-35 T 12-10-2018 R615_04065 5a6a190fb25067d08517bbde6261deb2 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.631 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_08220 a34cd745614e6915c998c7a5b863be35 783 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 257 435 4.1E-19 T 12-10-2018 IPR004477 ComEC/Rec2-related protein R615_08220 a34cd745614e6915c998c7a5b863be35 783 Pfam PF03772 Competence protein 235 492 1.9E-43 T 12-10-2018 IPR004477 ComEC/Rec2-related protein R615_08220 a34cd745614e6915c998c7a5b863be35 783 Pfam PF13567 Domain of unknown function (DUF4131) 27 200 1.6E-12 T 12-10-2018 IPR025405 Domain of unknown function DUF4131 R615_08220 a34cd745614e6915c998c7a5b863be35 783 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 149 759 1.8E-80 T 12-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 R615_08220 a34cd745614e6915c998c7a5b863be35 783 SMART SM00849 530 730 1.2E-4 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_08220 a34cd745614e6915c998c7a5b863be35 783 Gene3D G3DSA:3.60.15.10 522 772 5.0E-48 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_08220 a34cd745614e6915c998c7a5b863be35 783 Pfam PF00753 Metallo-beta-lactamase superfamily 527 727 1.1E-11 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_08220 a34cd745614e6915c998c7a5b863be35 783 SUPERFAMILY SSF56281 523 769 8.39E-40 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 TIGRFAM TIGR02961 allantoicase: allantoicase 10 326 1.8E-119 T 12-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 Pfam PF03561 Allantoicase repeat 188 326 2.9E-42 T 12-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 Pfam PF03561 Allantoicase repeat 20 165 4.8E-44 T 12-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 PIRSF PIRSF016516 1 330 1.7E-121 T 12-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 Gene3D G3DSA:2.60.120.260 1 169 4.1E-58 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 Gene3D G3DSA:2.60.120.260 170 330 9.4E-52 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 SUPERFAMILY SSF49785 5 167 4.25E-55 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 Hamap MF_00813 Probable allantoicase [alc]. 1 329 42.979 T 12-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 R615_15465 b19f38a578fc70d7868ba47e1da01e0f 332 SUPERFAMILY SSF49785 177 330 2.3E-48 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_03940 bba928e386089ed923b020bf4c929670 636 Gene3D G3DSA:3.90.640.10 228 315 4.0E-166 T 12-10-2018 R615_03940 bba928e386089ed923b020bf4c929670 636 Gene3D G3DSA:2.60.34.10 382 522 1.8E-64 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 137 157 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 53 61 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 468 484 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 387 406 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 333 349 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.9E-80 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 SUPERFAMILY SSF53067 186 381 1.77E-66 T 12-10-2018 R615_03940 bba928e386089ed923b020bf4c929670 636 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 SUPERFAMILY SSF100920 383 539 7.32E-60 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 SUPERFAMILY SSF100934 506 609 6.67E-19 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 Gene3D G3DSA:1.20.1270.10 523 601 1.0E-24 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 Pfam PF00012 Hsp70 protein 4 602 1.2E-263 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_03940 bba928e386089ed923b020bf4c929670 636 Gene3D G3DSA:3.30.420.40 179 365 4.0E-166 T 12-10-2018 R615_03940 bba928e386089ed923b020bf4c929670 636 SUPERFAMILY SSF53067 1 182 3.4E-67 T 12-10-2018 R615_03940 bba928e386089ed923b020bf4c929670 636 Gene3D G3DSA:3.30.420.40 5 378 4.0E-166 T 12-10-2018 R615_03940 bba928e386089ed923b020bf4c929670 636 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 3.1E-287 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 R615_03940 bba928e386089ed923b020bf4c929670 636 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 36.563 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 Pfam PF04055 Radical SAM superfamily 57 230 6.4E-18 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 SUPERFAMILY SSF102114 5 445 9.68E-132 T 12-10-2018 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 SMART SM00729 51 271 1.1E-45 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 7 458 1.6E-176 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 Gene3D G3DSA:1.10.10.920 366 458 1.3E-28 T 12-10-2018 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 Gene3D G3DSA:3.80.30.20 2 365 1.0E-115 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe R615_12100 4a856ef6c47ee48862d046a89636ae07 458 PIRSF PIRSF000167 5 458 1.4E-161 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 R615_12100 4a856ef6c47ee48862d046a89636ae07 458 Pfam PF06969 HemN C-terminal domain 367 433 2.3E-10 T 12-10-2018 IPR010723 HemN, C-terminal R615_15980 745eed44bcab9ea22454c93fb6fd8a31 107 SUPERFAMILY SSF109635 4 77 5.89E-9 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily R615_15980 745eed44bcab9ea22454c93fb6fd8a31 107 SUPERFAMILY SSF57716 78 106 5.42E-6 T 12-10-2018 R615_15980 745eed44bcab9ea22454c93fb6fd8a31 107 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 81 105 - T 12-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site R615_15980 745eed44bcab9ea22454c93fb6fd8a31 107 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 76 106 2.1E-9 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 R615_15980 745eed44bcab9ea22454c93fb6fd8a31 107 Gene3D G3DSA:1.20.120.910 1 107 2.1E-28 T 12-10-2018 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 331 1.8E-77 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 634 2.5E-20 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 SUPERFAMILY SSF51971 334 526 1.18E-42 T 12-10-2018 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 SUPERFAMILY SSF51395 4 362 9.02E-111 T 12-10-2018 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 Gene3D G3DSA:3.20.20.70 3 369 5.7E-122 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 518 5.9E-13 T 12-10-2018 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 460 478 5.9E-13 T 12-10-2018 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 5.9E-13 T 12-10-2018 R615_10445 55f642791e9f8be5aeb43cbb55117577 680 Gene3D G3DSA:3.50.50.60 472 630 5.7E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10445 55f642791e9f8be5aeb43cbb55117577 680 SUPERFAMILY SSF51905 463 658 7.2E-16 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10445 55f642791e9f8be5aeb43cbb55117577 680 Gene3D G3DSA:3.40.50.720 376 673 5.7E-108 T 12-10-2018 R615_16480 4646bb6e93937721aba41afdf19fdc84 151 Gene3D G3DSA:3.90.1170.40 1 149 3.2E-51 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 R615_16480 4646bb6e93937721aba41afdf19fdc84 151 Pfam PF02391 MoaE protein 7 120 1.3E-35 T 12-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 R615_16480 4646bb6e93937721aba41afdf19fdc84 151 SUPERFAMILY SSF54690 4 149 1.11E-50 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 R615_03110 327b51cc461554e09b087c9d5b1e6549 320 Gene3D G3DSA:1.10.8.350 35 201 9.2E-109 T 12-10-2018 R615_03110 327b51cc461554e09b087c9d5b1e6549 320 Gene3D G3DSA:1.10.530.10 68 316 9.2E-109 T 12-10-2018 R615_03110 327b51cc461554e09b087c9d5b1e6549 320 Pfam PF13406 Transglycosylase SLT domain 27 317 3.3E-98 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 R615_03110 327b51cc461554e09b087c9d5b1e6549 320 SUPERFAMILY SSF53955 12 319 8.84E-83 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_03110 327b51cc461554e09b087c9d5b1e6549 320 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 31 318 9.4E-109 T 12-10-2018 IPR011757 Lytic transglycosylase MltB R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SUPERFAMILY SSF55785 258 329 1.92E-13 T 12-10-2018 IPR035965 PAS domain superfamily R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 333 458 3.6E-15 T 12-10-2018 IPR000014 PAS domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 458 622 8.0E-46 T 12-10-2018 IPR000160 GGDEF domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Pfam PF13426 PAS domain 348 449 1.6E-11 T 12-10-2018 IPR000014 PAS domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Gene3D G3DSA:2.10.70.100 283 330 1.5E-10 T 12-10-2018 R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SUPERFAMILY SSF141868 643 882 1.7E-85 T 12-10-2018 IPR035919 EAL domain superfamily R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 PIRSF PIRSF005925 326 455 7.2E-11 T 12-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 PIRSF PIRSF005925 222 341 33.0 T 12-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 PIRSF PIRSF005925 450 887 5.0E-145 T 12-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Pfam PF00990 Diguanylate cyclase, GGDEF domain 463 620 4.0E-48 T 12-10-2018 IPR000160 GGDEF domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Pfam PF08447 PAS fold 254 321 1.7E-9 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SMART SM00052 634 881 9.5E-109 T 12-10-2018 IPR001633 EAL domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Pfam PF00563 EAL domain 641 876 1.4E-74 T 12-10-2018 IPR001633 EAL domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SUPERFAMILY SSF55785 342 449 6.46E-24 T 12-10-2018 IPR035965 PAS domain superfamily R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SMART SM00091 337 403 2.0E-8 T 12-10-2018 IPR000014 PAS domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SMART SM00091 213 281 73.0 T 12-10-2018 IPR000014 PAS domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Gene3D G3DSA:3.30.450.20 332 459 5.7E-31 T 12-10-2018 R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SUPERFAMILY SSF55073 467 626 1.73E-48 T 12-10-2018 IPR029787 Nucleotide cyclase R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Gene3D G3DSA:3.30.70.270 460 636 7.7E-60 T 12-10-2018 R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SMART SM00267 451 624 6.8E-67 T 12-10-2018 IPR000160 GGDEF domain R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Gene3D G3DSA:3.30.450.20 210 280 5.1E-12 T 12-10-2018 R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 Gene3D G3DSA:3.20.20.450 637 888 1.1E-96 T 12-10-2018 IPR035919 EAL domain superfamily R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SMART SM00086 287 329 3.9E-5 T 12-10-2018 IPR001610 PAC motif R615_04215 1d6cdae003bdc1dfd86f992fa07681c3 890 SMART SM00086 409 451 4.7E-4 T 12-10-2018 IPR001610 PAC motif R615_16190 25a6299acfb12404f75fc14dc723e82c 407 SUPERFAMILY SSF52540 6 232 7.41E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16190 25a6299acfb12404f75fc14dc723e82c 407 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 142 2.3E-13 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 SUPERFAMILY SSF50465 311 406 8.92E-34 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Pfam PF00009 Elongation factor Tu GTP binding domain 10 214 4.2E-56 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Pfam PF03143 Elongation factor Tu C-terminal domain 311 405 5.8E-32 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal R615_16190 25a6299acfb12404f75fc14dc723e82c 407 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 406 2.5E-215 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Gene3D G3DSA:2.40.30.10 351 406 7.5E-29 T 12-10-2018 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Gene3D G3DSA:2.40.30.10 219 347 4.6E-50 T 12-10-2018 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 SUPERFAMILY SSF50447 218 314 2.36E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16190 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Gene3D G3DSA:3.40.50.300 1 216 5.2E-68 T 12-10-2018 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 407 57.736 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16190 25a6299acfb12404f75fc14dc723e82c 407 Pfam PF03144 Elongation factor Tu domain 2 238 306 2.9E-15 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 SUPERFAMILY SSF52540 6 232 7.41E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16265 25a6299acfb12404f75fc14dc723e82c 407 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 142 2.3E-13 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 SUPERFAMILY SSF50465 311 406 8.92E-34 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Pfam PF00009 Elongation factor Tu GTP binding domain 10 214 4.2E-56 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Pfam PF03143 Elongation factor Tu C-terminal domain 311 405 5.8E-32 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal R615_16265 25a6299acfb12404f75fc14dc723e82c 407 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 406 2.5E-215 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Gene3D G3DSA:2.40.30.10 351 406 7.5E-29 T 12-10-2018 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Gene3D G3DSA:2.40.30.10 219 347 4.6E-50 T 12-10-2018 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 SUPERFAMILY SSF50447 218 314 2.36E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16265 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Gene3D G3DSA:3.40.50.300 1 216 5.2E-68 T 12-10-2018 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 407 57.736 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16265 25a6299acfb12404f75fc14dc723e82c 407 Pfam PF03144 Elongation factor Tu domain 2 238 306 2.9E-15 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 6.3E-110 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 SUPERFAMILY SSF55874 4 215 4.85E-66 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 625 0.0 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 SMART SM00433 34 624 1.1E-205 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Gene3D G3DSA:3.30.230.10 216 389 1.5E-55 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 SMART SM00387 27 173 4.0E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 628 46.537 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Gene3D G3DSA:3.40.50.670 390 623 3.9E-87 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 169 7.8E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Gene3D G3DSA:3.30.565.10 2 215 2.3E-74 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 SUPERFAMILY SSF56719 388 621 2.62E-76 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 66 79 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 562 578 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 109 123 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 266 279 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 414 428 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 31 46 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 497 514 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 479 495 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 PRINTS PR00418 DNA topoisomerase II family signature 517 529 1.2E-58 T 12-10-2018 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 SUPERFAMILY SSF54211 217 382 3.79E-48 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Pfam PF00204 DNA gyrase B 218 384 6.9E-40 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 558 620 9.6E-25 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00130 fc5453d84fa9283fb966ac6770b2a138 629 Pfam PF01751 Toprim domain 413 522 3.9E-13 T 12-10-2018 IPR006171 TOPRIM domain R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 12 307 48.7 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 211 217 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 Gene3D G3DSA:3.40.50.150 111 280 9.3E-46 T 12-10-2018 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 21 293 7.6E-81 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 Gene3D G3DSA:1.10.8.10 20 110 6.1E-5 T 12-10-2018 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 SUPERFAMILY SSF53335 22 300 5.37E-50 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 Pfam PF05175 Methyltransferase small domain 141 232 2.2E-18 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 PIRSF PIRSF037167 6 313 5.1E-128 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 R615_06085 8f9fd0cb49d0d48ca781a060573eb75b 315 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 19 301 1.2E-121 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 R615_04670 215624d232efb77bf309b00b55989f8b 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 297 321 2.6E-21 T 12-10-2018 R615_04670 215624d232efb77bf309b00b55989f8b 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 268 280 2.6E-21 T 12-10-2018 R615_04670 215624d232efb77bf309b00b55989f8b 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 161 177 2.6E-21 T 12-10-2018 R615_04670 215624d232efb77bf309b00b55989f8b 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 185 199 2.6E-21 T 12-10-2018 R615_04670 215624d232efb77bf309b00b55989f8b 499 Gene3D G3DSA:1.20.1260.30 1 135 1.0E-44 T 12-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily R615_04670 215624d232efb77bf309b00b55989f8b 499 Gene3D G3DSA:3.40.50.150 136 453 1.2E-86 T 12-10-2018 R615_04670 215624d232efb77bf309b00b55989f8b 499 SUPERFAMILY SSF53335 3 481 6.17E-121 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_04670 215624d232efb77bf309b00b55989f8b 499 Pfam PF12161 HsdM N-terminal domain 4 128 1.0E-15 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain R615_04670 215624d232efb77bf309b00b55989f8b 499 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 271 277 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_04670 215624d232efb77bf309b00b55989f8b 499 Pfam PF02384 N-6 DNA Methylase 139 448 1.5E-82 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 SUPERFAMILY SSF56645 126 356 3.14E-39 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 361 508 6.6E-16 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 129 233 1.8E-15 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 Gene3D G3DSA:1.10.540.10 125 236 2.0E-90 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 SUPERFAMILY SSF47203 361 508 1.55E-26 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 Gene3D G3DSA:2.40.110.10 237 360 2.0E-90 T 12-10-2018 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 Gene3D G3DSA:1.20.140.10 361 508 2.0E-90 T 12-10-2018 R615_04605 58c7f753630e0d77d4b20b73599ca5e8 838 Pfam PF09317 Domain of unknown function (DUF1974) 515 804 7.3E-96 T 12-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 R615_12755 68a99d37584b08c2f920404388cf8a39 245 SUPERFAMILY SSF63892 7 243 1.57E-97 T 12-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 R615_12755 68a99d37584b08c2f920404388cf8a39 245 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 9 240 1.7E-100 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 R615_12755 68a99d37584b08c2f920404388cf8a39 245 Gene3D G3DSA:3.20.20.70 1 245 2.1E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_12755 68a99d37584b08c2f920404388cf8a39 245 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 245 125.585 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 R615_12755 68a99d37584b08c2f920404388cf8a39 245 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 9 242 1.6E-97 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 R615_08500 653df9af4a3fb8f8418a7d3dcef15c9e 154 Gene3D G3DSA:3.40.50.1240 1 153 1.7E-31 T 12-10-2018 IPR029033 Histidine phosphatase superfamily R615_08500 653df9af4a3fb8f8418a7d3dcef15c9e 154 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 75 1.0E-11 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 R615_08500 653df9af4a3fb8f8418a7d3dcef15c9e 154 SMART SM00855 2 110 1.2E-4 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 R615_08500 653df9af4a3fb8f8418a7d3dcef15c9e 154 SUPERFAMILY SSF53254 1 133 4.45E-19 T 12-10-2018 IPR029033 Histidine phosphatase superfamily R615_08500 653df9af4a3fb8f8418a7d3dcef15c9e 154 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 118 2.4E-23 T 12-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 R615_15065 e8e63326e6efd579274ffa855f661bea 447 Gene3D G3DSA:1.10.8.60 340 444 1.1E-35 T 12-10-2018 R615_15065 e8e63326e6efd579274ffa855f661bea 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 137 2.5E-7 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_15065 e8e63326e6efd579274ffa855f661bea 447 SUPERFAMILY SSF52540 3 445 1.23E-88 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15065 e8e63326e6efd579274ffa855f661bea 447 Pfam PF07724 AAA domain (Cdc48 subfamily) 189 334 8.0E-41 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_15065 e8e63326e6efd579274ffa855f661bea 447 SMART SM00382 49 337 1.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_15065 e8e63326e6efd579274ffa855f661bea 447 SMART SM01086 340 435 1.0E-19 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_15065 e8e63326e6efd579274ffa855f661bea 447 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 447 2.0E-214 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 R615_15065 e8e63326e6efd579274ffa855f661bea 447 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 447 42.545 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 R615_15065 e8e63326e6efd579274ffa855f661bea 447 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 340 410 5.4E-6 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:3.30.70.1320 138 330 1.2E-249 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82866 793 1015 5.1E-46 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82693 42 137 2.14E-18 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.6E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 1.6E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 1.6E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.6E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 1.6E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.6E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:3.30.2090.10 181 273 1.2E-249 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:3.30.70.1430 42 805 1.2E-249 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:3.30.2090.10 707 797 1.2E-249 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:1.20.1640.10 12 509 1.2E-249 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82866 295 492 9.55E-35 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82693 138 327 2.2E-17 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82714 186 267 6.41E-13 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82693 558 606 3.56E-5 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:3.30.70.1430 557 655 1.2E-249 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 SUPERFAMILY SSF82714 710 790 9.55E-7 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:1.20.1640.10 510 1009 1.2E-249 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Gene3D G3DSA:3.30.70.1440 656 857 1.2E-249 T 12-10-2018 R615_11395 8994828cad154ae64513fd5b2666e15a 1020 Pfam PF00873 AcrB/AcrD/AcrF family 7 1012 2.8E-161 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_00560 00823a1bfc74a6694a3c55756bb3d5a9 240 Gene3D G3DSA:1.10.10.200 17 78 1.1E-17 T 12-10-2018 IPR017856 Integrase-like, N-terminal R615_00560 00823a1bfc74a6694a3c55756bb3d5a9 240 SUPERFAMILY SSF75625 1 238 4.97E-70 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00560 00823a1bfc74a6694a3c55756bb3d5a9 240 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 238 25.626 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00560 00823a1bfc74a6694a3c55756bb3d5a9 240 Gene3D G3DSA:3.30.70.980 83 235 4.6E-40 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00560 00823a1bfc74a6694a3c55756bb3d5a9 240 Gene3D G3DSA:3.30.70.980 131 202 4.6E-40 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00560 00823a1bfc74a6694a3c55756bb3d5a9 240 Pfam PF01709 Transcriptional regulator 4 235 2.7E-68 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_10250 2ad082e148cc699be969c7077efcaea2 852 SUPERFAMILY SSF51905 2 189 1.21E-39 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10250 2ad082e148cc699be969c7077efcaea2 852 Gene3D G3DSA:1.10.10.1100 429 483 5.2E-11 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 Pfam PF04324 BFD-like [2Fe-2S] binding domain 492 539 1.5E-4 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain R615_10250 2ad082e148cc699be969c7077efcaea2 852 Pfam PF04324 BFD-like [2Fe-2S] binding domain 430 477 2.6E-9 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain R615_10250 2ad082e148cc699be969c7077efcaea2 852 SUPERFAMILY SSF55124 511 647 1.8E-24 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_10250 2ad082e148cc699be969c7077efcaea2 852 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 291 8.1E-52 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00397 Sirohaem Fe-binding site signature 685 703 4.8E-7 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00397 Sirohaem Fe-binding site signature 642 660 4.8E-7 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_10250 2ad082e148cc699be969c7077efcaea2 852 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 806 0.0 T 12-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PIRSF PIRSF037149 1 841 0.0 T 12-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 R615_10250 2ad082e148cc699be969c7077efcaea2 852 Gene3D G3DSA:3.50.50.60 110 245 9.4E-85 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10250 2ad082e148cc699be969c7077efcaea2 852 Gene3D G3DSA:3.50.50.60 7 282 9.4E-85 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10250 2ad082e148cc699be969c7077efcaea2 852 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 566 627 5.0E-10 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 3.7E-10 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 3.7E-10 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.7E-10 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.7E-10 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 638 774 2.5E-20 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_10250 2ad082e148cc699be969c7077efcaea2 852 SUPERFAMILY SSF51905 144 311 4.81E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10250 2ad082e148cc699be969c7077efcaea2 852 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 685 701 - T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 4.3E-17 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 4.3E-17 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.3E-17 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.3E-17 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 4.3E-17 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 Gene3D G3DSA:3.30.413.10 637 807 4.2E-36 T 12-10-2018 R615_10250 2ad082e148cc699be969c7077efcaea2 852 SUPERFAMILY SSF56014 639 815 2.36E-51 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 SUPERFAMILY SSF55021 627 702 1.3E-6 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 Pfam PF13291 ACT domain 625 701 7.5E-15 T 12-10-2018 IPR002912 ACT domain R615_00875 ec84a00de2c08742430c31c5203110ff 704 SUPERFAMILY SSF81301 180 391 9.16E-62 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 699 2.6E-242 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 R615_00875 ec84a00de2c08742430c31c5203110ff 704 Gene3D G3DSA:3.30.70.260 624 704 5.1E-14 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 SUPERFAMILY SSF109604 4 189 8.32E-71 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 SUPERFAMILY SSF81271 374 446 9.37E-22 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 R615_00875 ec84a00de2c08742430c31c5203110ff 704 SMART SM00471 41 153 4.0E-9 T 12-10-2018 IPR003607 HD/PDEase domain R615_00875 ec84a00de2c08742430c31c5203110ff 704 Pfam PF13328 HD domain 26 175 1.6E-50 T 12-10-2018 IPR003607 HD/PDEase domain R615_00875 ec84a00de2c08742430c31c5203110ff 704 Pfam PF02824 TGS domain 387 446 2.0E-19 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 R615_00875 ec84a00de2c08742430c31c5203110ff 704 Pfam PF04607 Region found in RelA / SpoT proteins 235 344 3.2E-35 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 R615_00875 ec84a00de2c08742430c31c5203110ff 704 Gene3D G3DSA:3.30.460.10 194 325 1.7E-46 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 Gene3D G3DSA:1.10.3210.10 2 190 7.7E-76 T 12-10-2018 R615_00875 ec84a00de2c08742430c31c5203110ff 704 Gene3D G3DSA:3.10.20.30 380 454 3.3E-30 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_00875 ec84a00de2c08742430c31c5203110ff 704 SMART SM00954 235 345 6.1E-62 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SUPERFAMILY SSF48452 424 584 1.17E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SUPERFAMILY SSF48452 208 375 2.44E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 Pfam PF13432 Tetratricopeptide repeat 489 544 2.0E-5 T 12-10-2018 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 449 482 78.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 211 244 0.0023 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 518 551 160.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 313 346 200.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 483 517 1.2 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 245 278 15.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 347 380 20.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SMART SM00028 143 176 150.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 Pfam PF14559 Tetratricopeptide repeat 225 288 1.4E-7 T 12-10-2018 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 Gene3D G3DSA:1.25.40.10 248 378 1.2E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 SUPERFAMILY SSF48452 120 172 9.8E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13245 aec5e7dfa6cb70b0b8431e6bd15adfb7 601 Gene3D G3DSA:1.25.40.10 423 594 9.7E-28 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 SUPERFAMILY SSF51905 4 214 4.17E-47 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 57 2.6E-6 T 12-10-2018 R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.3E-5 T 12-10-2018 R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 180 205 3.3E-5 T 12-10-2018 R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 Gene3D G3DSA:3.50.50.60 1 245 2.0E-53 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 Gene3D G3DSA:3.50.50.60 312 476 1.9E-7 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 SUPERFAMILY SSF51905 150 344 1.58E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13860 f994cad0708b0fa0dfd782fb3d866f1d 493 Pfam PF00743 Flavin-binding monooxygenase-like 80 346 2.1E-14 T 12-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 R615_11900 632f25c92504dfb851f203432de94f36 449 Gene3D G3DSA:1.10.3550.10 118 433 1.7E-155 T 12-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal R615_11900 632f25c92504dfb851f203432de94f36 449 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 440 1.1E-101 T 12-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 R615_11900 632f25c92504dfb851f203432de94f36 449 SUPERFAMILY SSF109604 29 437 1.26E-69 T 12-10-2018 R615_11900 632f25c92504dfb851f203432de94f36 449 Pfam PF01966 HD domain 67 176 5.0E-10 T 12-10-2018 IPR006674 HD domain R615_11900 632f25c92504dfb851f203432de94f36 449 Gene3D G3DSA:1.10.3210.10 32 242 1.7E-155 T 12-10-2018 R615_11900 632f25c92504dfb851f203432de94f36 449 SMART SM00471 63 259 6.6E-10 T 12-10-2018 IPR003607 HD/PDEase domain R615_11900 632f25c92504dfb851f203432de94f36 449 Gene3D G3DSA:1.10.3410.10 243 355 1.7E-155 T 12-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 Pfam PF00905 Penicillin binding protein transpeptidase domain 319 554 3.6E-14 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 SUPERFAMILY SSF53955 56 274 4.22E-64 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 Gene3D G3DSA:3.40.710.10 271 631 2.0E-76 T 12-10-2018 R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 SUPERFAMILY SSF56601 224 637 9.6E-94 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 Pfam PF00912 Transglycosylase 76 242 9.0E-49 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 Gene3D G3DSA:1.10.3810.10 60 258 1.2E-53 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 55 798 3.3E-230 T 12-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_16300 6b2671273d5c9bb19b9527aad0c204ea 798 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 707 795 3.7E-11 T 12-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 Gene3D G3DSA:2.60.40.3500 12 127 1.5E-27 T 12-10-2018 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 SUPERFAMILY SSF53187 149 369 1.76E-53 T 12-10-2018 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 SMART SM00257 391 434 1.3E-15 T 12-10-2018 IPR018392 LysM domain R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 151 366 5.6E-49 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 SMART SM00646 211 366 1.1E-59 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 Pfam PF01476 LysM domain 392 434 2.7E-13 T 12-10-2018 IPR018392 LysM domain R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 SUPERFAMILY SSF54106 390 434 5.1E-10 T 12-10-2018 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 Gene3D G3DSA:3.40.630.40 138 375 1.4E-76 T 12-10-2018 R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 Gene3D G3DSA:3.10.350.10 390 435 6.3E-16 T 12-10-2018 IPR036779 LysM domain superfamily R615_02480 a3764da37c8a2ba55f35f4153ccaf1be 436 Pfam PF11741 AMIN domain 24 124 1.4E-17 T 12-10-2018 IPR021731 AMIN domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 524 1.3E-46 T 12-10-2018 IPR000160 GGDEF domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Gene3D G3DSA:3.30.70.270 359 539 1.7E-65 T 12-10-2018 R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SMART SM00091 240 306 6.2E-5 T 12-10-2018 IPR000014 PAS domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Pfam PF00563 EAL domain 542 779 1.1E-79 T 12-10-2018 IPR001633 EAL domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SUPERFAMILY SSF141868 541 792 1.44E-93 T 12-10-2018 IPR035919 EAL domain superfamily R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SMART SM00052 536 784 4.0E-119 T 12-10-2018 IPR001633 EAL domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SMART SM00267 354 526 4.7E-69 T 12-10-2018 IPR000160 GGDEF domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Gene3D G3DSA:3.20.20.450 540 793 2.2E-104 T 12-10-2018 IPR035919 EAL domain superfamily R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SMART SM00086 312 354 2.2E-6 T 12-10-2018 IPR001610 PAC motif R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 522 1.1E-53 T 12-10-2018 IPR000160 GGDEF domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Pfam PF08447 PAS fold 264 347 7.9E-11 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 236 358 1.0E-13 T 12-10-2018 IPR000014 PAS domain R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Pfam PF17152 Periplasmic sensor domain 41 142 6.4E-9 T 12-10-2018 IPR033417 Periplasmic sensor domain CHASE8 R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 Gene3D G3DSA:3.30.450.20 232 351 1.8E-25 T 12-10-2018 R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SUPERFAMILY SSF55785 248 357 2.44E-19 T 12-10-2018 IPR035965 PAS domain superfamily R615_01605 70d0b58cade12f600e49bdc26ff82ab1 803 SUPERFAMILY SSF55073 370 528 5.81E-53 T 12-10-2018 IPR029787 Nucleotide cyclase R615_01630 4f82d918868bea9089bdeaa0b1fea941 246 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 9.9E-78 T 12-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 R615_01630 4f82d918868bea9089bdeaa0b1fea941 246 SUPERFAMILY SSF51366 1 237 4.08E-73 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_01630 4f82d918868bea9089bdeaa0b1fea941 246 Gene3D G3DSA:3.20.20.70 1 241 6.1E-85 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_01630 4f82d918868bea9089bdeaa0b1fea941 246 Pfam PF00977 Histidine biosynthesis protein 3 231 2.0E-77 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 R615_01630 4f82d918868bea9089bdeaa0b1fea941 246 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 239 35.805 T 12-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 R615_05930 6a8338be976037878efc57d86114397b 443 Pfam PF01458 Uncharacterized protein family (UPF0051) 179 403 2.2E-71 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 R615_05930 6a8338be976037878efc57d86114397b 443 SUPERFAMILY SSF101960 22 428 2.35E-97 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily R615_05930 6a8338be976037878efc57d86114397b 443 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 143 416 1.8E-78 T 12-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 SUPERFAMILY SSF52440 1 83 2.88E-10 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 Gene3D G3DSA:3.30.1490.20 89 162 1.3E-26 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 Pfam PF02222 ATP-grasp domain 93 262 2.1E-52 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 335 35.311 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 SUPERFAMILY SSF56059 84 281 1.1E-56 T 12-10-2018 R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 Gene3D G3DSA:3.40.50.20 1 88 5.5E-12 T 12-10-2018 R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 Gene3D G3DSA:3.30.470.20 163 354 8.6E-59 T 12-10-2018 R615_06870 aa11f8bcadfb2dd4fdbf9a7e9158f536 358 SUPERFAMILY SSF51246 289 354 2.04E-11 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 R615_15475 b67b7eb87d917e39817b9dae347431de 792 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 25 778 0.0 T 12-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 R615_15475 b67b7eb87d917e39817b9dae347431de 792 Gene3D G3DSA:3.30.365.10 461 611 2.4E-270 T 12-10-2018 R615_15475 b67b7eb87d917e39817b9dae347431de 792 SMART SM01008 37 144 2.9E-28 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead R615_15475 b67b7eb87d917e39817b9dae347431de 792 Gene3D G3DSA:3.90.1170.50 25 144 2.4E-270 T 12-10-2018 R615_15475 b67b7eb87d917e39817b9dae347431de 792 Gene3D G3DSA:3.30.365.10 145 775 2.4E-270 T 12-10-2018 R615_15475 b67b7eb87d917e39817b9dae347431de 792 SUPERFAMILY SSF54665 18 142 1.13E-29 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily R615_15475 b67b7eb87d917e39817b9dae347431de 792 Gene3D G3DSA:3.30.365.10 192 286 2.4E-270 T 12-10-2018 R615_15475 b67b7eb87d917e39817b9dae347431de 792 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 161 709 1.5E-203 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 R615_15475 b67b7eb87d917e39817b9dae347431de 792 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 37 140 1.3E-17 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead R615_15475 b67b7eb87d917e39817b9dae347431de 792 SUPERFAMILY SSF56003 146 776 5.89E-200 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 R615_15475 b67b7eb87d917e39817b9dae347431de 792 Gene3D G3DSA:3.30.365.10 158 409 2.4E-270 T 12-10-2018 R615_09900 f402b08f2c52344485ae6f320af0db6d 386 Pfam PF01546 Peptidase family M20/M25/M40 69 376 2.1E-28 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 R615_09900 f402b08f2c52344485ae6f320af0db6d 386 SUPERFAMILY SSF53187 7 378 7.78E-74 T 12-10-2018 R615_09900 f402b08f2c52344485ae6f320af0db6d 386 Pfam PF07687 Peptidase dimerisation domain 178 277 1.8E-8 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain R615_09900 f402b08f2c52344485ae6f320af0db6d 386 PIRSF PIRSF005962 1 383 6.4E-110 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 R615_09900 f402b08f2c52344485ae6f320af0db6d 386 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 369 2.6E-103 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 R615_09900 f402b08f2c52344485ae6f320af0db6d 386 Gene3D G3DSA:3.40.630.10 14 368 1.5E-125 T 12-10-2018 R615_09900 f402b08f2c52344485ae6f320af0db6d 386 SUPERFAMILY SSF55031 181 291 1.1E-24 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain R615_09900 f402b08f2c52344485ae6f320af0db6d 386 Gene3D G3DSA:3.30.70.360 177 291 1.5E-125 T 12-10-2018 R615_04045 c91db09543e8258cd520b8d514db5111 498 Gene3D G3DSA:1.10.150.20 435 493 7.8E-23 T 12-10-2018 R615_04045 c91db09543e8258cd520b8d514db5111 498 Gene3D G3DSA:3.30.300.20 202 281 3.7E-29 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_04045 c91db09543e8258cd520b8d514db5111 498 SUPERFAMILY SSF54814 203 282 2.55E-27 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 R615_04045 c91db09543e8258cd520b8d514db5111 498 SUPERFAMILY SSF47794 433 495 1.52E-16 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 R615_04045 c91db09543e8258cd520b8d514db5111 498 Gene3D G3DSA:2.40.50.140 138 201 4.1E-19 T 12-10-2018 R615_04045 c91db09543e8258cd520b8d514db5111 498 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 417 3.7E-20 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication R615_04045 c91db09543e8258cd520b8d514db5111 498 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 444 493 1.3E-19 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication R615_04045 c91db09543e8258cd520b8d514db5111 498 SUPERFAMILY SSF69705 1 129 2.49E-37 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 R615_04045 c91db09543e8258cd520b8d514db5111 498 SMART SM00316 136 203 6.0E-12 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_04045 c91db09543e8258cd520b8d514db5111 498 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 414 29.294 T 12-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 R615_04045 c91db09543e8258cd520b8d514db5111 498 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 6.5E-121 T 12-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 R615_04045 c91db09543e8258cd520b8d514db5111 498 Pfam PF13184 NusA-like KH domain 233 301 3.2E-25 T 12-10-2018 IPR025249 KH domain, NusA-like GO:0003723 R615_04045 c91db09543e8258cd520b8d514db5111 498 Gene3D G3DSA:3.30.1480.10 1 132 2.4E-41 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 R615_04045 c91db09543e8258cd520b8d514db5111 498 SUPERFAMILY SSF54814 283 346 5.95E-15 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 R615_04045 c91db09543e8258cd520b8d514db5111 498 Gene3D G3DSA:1.10.150.20 356 425 3.1E-28 T 12-10-2018 R615_04045 c91db09543e8258cd520b8d514db5111 498 Pfam PF00575 S1 RNA binding domain 135 198 2.1E-7 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_04045 c91db09543e8258cd520b8d514db5111 498 Gene3D G3DSA:3.30.300.20 282 351 9.8E-25 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_04045 c91db09543e8258cd520b8d514db5111 498 SUPERFAMILY SSF50249 135 202 4.99E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_04045 c91db09543e8258cd520b8d514db5111 498 Pfam PF14520 Helix-hairpin-helix domain 436 490 9.2E-9 T 12-10-2018 R615_04045 c91db09543e8258cd520b8d514db5111 498 SUPERFAMILY SSF47794 359 421 7.38E-17 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 R615_04045 c91db09543e8258cd520b8d514db5111 498 Pfam PF08529 NusA N-terminal domain 4 126 3.1E-37 T 12-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 R615_04045 c91db09543e8258cd520b8d514db5111 498 SMART SM00322 305 365 0.0012 T 12-10-2018 IPR004087 K Homology domain GO:0003676 R615_04045 c91db09543e8258cd520b8d514db5111 498 SMART SM00322 233 297 41.0 T 12-10-2018 IPR004087 K Homology domain GO:0003676 R615_07915 e238e828226be0916a35adfcdcfcb15b 285 Gene3D G3DSA:3.40.50.720 1 259 5.9E-73 T 12-10-2018 R615_07915 e238e828226be0916a35adfcdcfcb15b 285 SUPERFAMILY SSF51735 1 263 1.78E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 9.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 9.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.3E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.3E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.3E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.3E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.3E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07915 e238e828226be0916a35adfcdcfcb15b 285 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_07915 e238e828226be0916a35adfcdcfcb15b 285 Pfam PF00106 short chain dehydrogenase 6 194 1.9E-54 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 2 236 1.8E-97 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 SUPERFAMILY SSF53328 41 236 7.2E-61 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 Gene3D G3DSA:3.40.50.170 40 236 4.3E-77 T 12-10-2018 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 Pfam PF00551 Formyl transferase 41 216 2.0E-39 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 64 1.5E-45 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 64 91 1.5E-45 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 188 210 1.5E-45 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 R615_14250 8bc6d2c5426102cde02eb680620a5d6e 236 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 210 235 1.5E-45 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Pfam PF00384 Molybdopterin oxidoreductase 76 497 3.7E-80 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Gene3D G3DSA:2.40.40.20 591 716 5.2E-35 T 12-10-2018 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Pfam PF04324 BFD-like [2Fe-2S] binding domain 845 893 2.6E-9 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Pfam PF01568 Molydopterin dinucleotide binding domain 598 709 8.0E-29 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Gene3D G3DSA:3.40.50.740 86 580 3.8E-173 T 12-10-2018 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 7 73 2.0E-15 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Gene3D G3DSA:2.20.25.90 5 73 1.5E-14 T 12-10-2018 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 PIRSF PIRSF036643 1 729 5.1E-147 T 12-10-2018 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 SMART SM00926 5 73 8.1E-14 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Gene3D G3DSA:1.10.10.1100 844 898 1.6E-10 T 12-10-2018 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 SUPERFAMILY SSF50692 592 739 5.42E-37 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 SUPERFAMILY SSF53706 6 585 5.63E-181 T 12-10-2018 R615_10255 186516aa9d46d4cb2d5ead2d688c75ef 908 Gene3D G3DSA:3.40.228.10 153 583 3.8E-173 T 12-10-2018 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SUPERFAMILY SSF47781 561 633 5.78E-19 T 12-10-2018 IPR010994 RuvA domain 2-like R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SUPERFAMILY SSF53098 322 470 1.14E-52 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SMART SM00732 326 425 3.4E-36 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Gene3D G3DSA:1.10.10.650 3 110 4.3E-41 T 12-10-2018 IPR023319 Tex-like protein, HTH domain superfamily R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SUPERFAMILY SSF47781 471 558 8.56E-27 T 12-10-2018 IPR010994 RuvA domain 2-like R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Gene3D G3DSA:1.10.3500.10 113 499 2.3E-158 T 12-10-2018 IPR023323 Tex-like domain superfamily R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Pfam PF00575 S1 RNA binding domain 650 721 2.6E-18 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SUPERFAMILY SSF50249 640 728 2.39E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Pfam PF12836 Helix-hairpin-helix motif 492 556 1.1E-26 T 12-10-2018 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Pfam PF09371 Tex-like protein N-terminal domain 10 192 6.7E-69 T 12-10-2018 IPR018974 Tex-like protein, N-terminal R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SUPERFAMILY SSF158832 4 321 1.96E-118 T 12-10-2018 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Gene3D G3DSA:1.10.150.310 500 631 5.7E-49 T 12-10-2018 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 SMART SM00316 650 721 1.9E-23 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Gene3D G3DSA:3.30.420.140 325 452 2.3E-158 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Pfam PF16921 Tex protein YqgF-like domain 326 452 9.2E-54 T 12-10-2018 IPR032639 Tex protein, YqgF-like domain R615_17025 4af5bc6d444ea6921153bae53596e3e7 780 Gene3D G3DSA:2.40.50.140 632 726 4.6E-28 T 12-10-2018 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 SUPERFAMILY SSF81606 247 377 5.49E-5 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 SUPERFAMILY SSF52172 1 142 7.97E-35 T 12-10-2018 IPR011006 CheY-like superfamily R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 Pfam PF13581 Histidine kinase-like ATPase domain 445 559 1.3E-7 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 SMART SM00448 4 117 1.3E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 Gene3D G3DSA:3.40.50.2300 1 137 4.7E-33 T 12-10-2018 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 Gene3D G3DSA:3.60.40.10 166 387 5.7E-35 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 Pfam PF00072 Response regulator receiver domain 6 117 1.2E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 190 381 1.0E-35 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_05170 4bd848c8f0f0f1ba908b81d4e8a66ad4 571 SMART SM00331 179 381 1.4E-4 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 PIRSF PIRSF004486 2 311 1.0E-101 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 SUPERFAMILY SSF81799 116 215 4.32E-36 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 8 310 38.959 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 SUPERFAMILY SSF53335 8 310 5.7E-47 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 Gene3D G3DSA:1.10.150.170 114 216 4.7E-104 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 Pfam PF01795 MraW methylase family 6 309 2.0E-112 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 309 2.1E-114 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 R615_13440 530f5bc8e5aef520969cafb5fed7e4b5 311 Gene3D G3DSA:3.40.50.150 11 309 4.7E-104 T 12-10-2018 R615_05160 220794293a53c68b9632870d2cb24858 350 PIRSF PIRSF000876 2 350 3.1E-122 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_05160 220794293a53c68b9632870d2cb24858 350 SUPERFAMILY SSF52172 4 123 8.11E-28 T 12-10-2018 IPR011006 CheY-like superfamily R615_05160 220794293a53c68b9632870d2cb24858 350 SUPERFAMILY SSF52738 162 346 1.57E-56 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal R615_05160 220794293a53c68b9632870d2cb24858 350 Gene3D G3DSA:3.40.50.2300 3 134 4.8E-30 T 12-10-2018 R615_05160 220794293a53c68b9632870d2cb24858 350 Pfam PF01339 CheB methylesterase 164 343 3.5E-50 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_05160 220794293a53c68b9632870d2cb24858 350 SMART SM00448 5 124 2.5E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05160 220794293a53c68b9632870d2cb24858 350 Pfam PF00072 Response regulator receiver domain 7 113 1.1E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05160 220794293a53c68b9632870d2cb24858 350 Gene3D G3DSA:3.40.50.180 154 350 4.9E-62 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal R615_05160 220794293a53c68b9632870d2cb24858 350 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 348 36.53 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Pfam PF13361 UvrD-like helicase C-terminal domain 460 842 1.3E-22 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 2 1259 20.596 T 12-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Gene3D G3DSA:3.40.50.300 4 450 1.3E-129 T 12-10-2018 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 SUPERFAMILY SSF52980 915 1182 1.34E-62 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Gene3D G3DSA:1.10.486.10 606 750 3.6E-138 T 12-10-2018 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 451 2.7E-56 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 SUPERFAMILY SSF52540 12 852 1.46E-109 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Gene3D G3DSA:1.10.3170.10 163 359 1.3E-129 T 12-10-2018 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Gene3D G3DSA:3.40.50.300 462 866 3.6E-138 T 12-10-2018 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 5 1185 4.5E-274 T 12-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Gene3D G3DSA:3.90.320.10 904 1205 6.4E-78 T 12-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal R615_10105 6360e52ab1b87bd82f040ebe173095ce 1263 Pfam PF12705 PD-(D/E)XK nuclease superfamily 990 1221 1.0E-6 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type R615_06610 3fb1c3b49c26b04672a92221af468ed5 193 SUPERFAMILY SSF64288 30 188 8.63E-35 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily R615_06610 3fb1c3b49c26b04672a92221af468ed5 193 Pfam PF01947 Protein of unknown function (DUF98) 37 188 3.9E-15 T 12-10-2018 IPR002800 Chorismate pyruvate-lyase Rv2949c-like R615_06610 3fb1c3b49c26b04672a92221af468ed5 193 Gene3D G3DSA:3.40.1410.10 28 193 1.8E-38 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 Gene3D G3DSA:3.40.47.10 6 276 1.3E-155 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 3.0E-146 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 Pfam PF00108 Thiolase, N-terminal domain 4 262 3.0E-106 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 SUPERFAMILY SSF53901 3 270 6.9E-89 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 PIRSF PIRSF000429 1 392 3.0E-131 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 Pfam PF02803 Thiolase, C-terminal domain 271 392 2.3E-52 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 SUPERFAMILY SSF53901 272 392 2.23E-43 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 Gene3D G3DSA:3.40.47.10 126 389 1.3E-155 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_16580 642bd81ebaad0e054880f8d6d6f5e81b 392 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.1E-39 T 12-10-2018 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.1E-39 T 12-10-2018 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.1E-39 T 12-10-2018 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.1E-39 T 12-10-2018 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 SUPERFAMILY SSF52210 123 287 1.02E-56 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 SMART SM00881 4 100 2.3E-37 T 12-10-2018 IPR003781 CoA-binding GO:0048037 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 PIRSF PIRSF001553 1 289 1.2E-132 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 287 3.6E-143 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 Gene3D G3DSA:3.40.50.261 124 288 5.0E-76 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 Pfam PF02629 CoA binding domain 6 99 2.0E-31 T 12-10-2018 IPR003781 CoA-binding GO:0048037 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 12-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 42.471 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 Gene3D G3DSA:3.40.50.720 1 123 1.3E-50 T 12-10-2018 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 12-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 Pfam PF00549 CoA-ligase 151 271 3.5E-21 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09980 148b0a8dd1bb7a8f457d08c9c26e419f 290 SUPERFAMILY SSF51735 1 122 9.31E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_10260 1478f1fdd83e5804977514bbe89bbe71 264 SUPERFAMILY SSF53790 18 258 3.4E-68 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 R615_10260 1478f1fdd83e5804977514bbe89bbe71 264 Gene3D G3DSA:3.40.1010.10 21 137 2.3E-42 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 R615_10260 1478f1fdd83e5804977514bbe89bbe71 264 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 23 227 5.0E-41 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 R615_10260 1478f1fdd83e5804977514bbe89bbe71 264 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 22 250 1.3E-81 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_10260 1478f1fdd83e5804977514bbe89bbe71 264 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 102 135 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 R615_10260 1478f1fdd83e5804977514bbe89bbe71 264 Gene3D G3DSA:3.30.950.10 138 262 6.6E-31 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 R615_12360 33d1ca555fe0f34724a8ab63f694cbf6 267 PIRSF PIRSF005902 1 257 3.1E-54 T 12-10-2018 IPR001130 TatD family GO:0016788 R615_12360 33d1ca555fe0f34724a8ab63f694cbf6 267 Gene3D G3DSA:3.20.20.140 3 255 2.5E-66 T 12-10-2018 R615_12360 33d1ca555fe0f34724a8ab63f694cbf6 267 Pfam PF01026 TatD related DNase 5 253 1.3E-55 T 12-10-2018 IPR001130 TatD family GO:0016788 R615_12360 33d1ca555fe0f34724a8ab63f694cbf6 267 SUPERFAMILY SSF51556 4 254 4.82E-64 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 Pfam PF13545 Crp-like helix-turn-helix domain 169 242 8.5E-18 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 Pfam PF00027 Cyclic nucleotide-binding domain 52 134 1.5E-13 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 194 210 1.1E-9 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 210 225 1.1E-9 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 SMART SM00100 31 149 1.3E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 SUPERFAMILY SSF51206 24 163 1.19E-28 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 SUPERFAMILY SSF46785 166 246 1.45E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 Gene3D G3DSA:1.10.10.10 166 246 1.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 SMART SM00419 188 236 1.0E-13 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_07695 6ecb5e8b0492a38f279cd04eb31a056f 257 Gene3D G3DSA:2.60.120.10 44 165 2.6E-40 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 ProSitePatterns PS00202 Rubredoxin signature. 129 139 - T 12-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 SUPERFAMILY SSF57802 1 54 2.36E-16 T 12-10-2018 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 PRINTS PR00163 Rubredoxin signature 99 115 7.0E-9 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 PRINTS PR00163 Rubredoxin signature 129 145 7.0E-9 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 Pfam PF00301 Rubredoxin 3 50 8.4E-17 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 Pfam PF00301 Rubredoxin 99 145 1.6E-19 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 SUPERFAMILY SSF57802 97 149 7.74E-20 T 12-10-2018 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 Gene3D G3DSA:2.20.28.10 97 151 6.3E-24 T 12-10-2018 R615_10395 7ea1ab6f5f27293bb490592e567ad43f 151 Gene3D G3DSA:2.20.28.10 1 56 9.9E-22 T 12-10-2018 R615_07415 44b8ac75b0aee7699fc0c0fddad8d6bc 1220 Pfam PF04865 Baseplate J-like protein 956 1113 2.9E-7 T 12-10-2018 IPR006949 Baseplate protein J-like R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Pfam PF13291 ACT domain 667 743 1.2E-18 T 12-10-2018 IPR002912 ACT domain R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Pfam PF02824 TGS domain 415 474 6.1E-20 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Gene3D G3DSA:1.10.3210.10 13 217 3.0E-46 T 12-10-2018 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 SMART SM00954 261 371 2.3E-65 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 67 742 2.1E-189 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 SUPERFAMILY SSF81271 408 475 1.46E-20 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 SUPERFAMILY SSF81301 206 419 6.7E-64 T 12-10-2018 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 SUPERFAMILY SSF55021 666 743 6.87E-14 T 12-10-2018 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Gene3D G3DSA:3.30.70.260 666 747 1.0E-18 T 12-10-2018 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 SUPERFAMILY SSF109604 18 217 1.69E-46 T 12-10-2018 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Pfam PF13328 HD domain 40 201 2.4E-43 T 12-10-2018 IPR003607 HD/PDEase domain R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Gene3D G3DSA:3.10.20.30 408 483 4.4E-30 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Gene3D G3DSA:3.30.460.10 219 351 1.3E-50 T 12-10-2018 R615_12730 dead80f00bad5fcc91a34ad07e93a1d3 750 Pfam PF04607 Region found in RelA / SpoT proteins 261 370 6.5E-37 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 R615_17285 0e96a27a246426a89a25f42447e15e41 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 6.2E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_17285 0e96a27a246426a89a25f42447e15e41 301 SUPERFAMILY SSF46785 6 87 1.43E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_17285 0e96a27a246426a89a25f42447e15e41 301 Gene3D G3DSA:1.10.10.10 2 90 6.9E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_17285 0e96a27a246426a89a25f42447e15e41 301 SUPERFAMILY SSF53850 93 300 2.29E-43 T 12-10-2018 R615_17285 0e96a27a246426a89a25f42447e15e41 301 Gene3D G3DSA:3.40.190.10 174 272 1.4E-58 T 12-10-2018 R615_17285 0e96a27a246426a89a25f42447e15e41 301 Gene3D G3DSA:3.40.190.10 95 296 1.4E-58 T 12-10-2018 R615_17285 0e96a27a246426a89a25f42447e15e41 301 Pfam PF03466 LysR substrate binding domain 108 298 1.6E-23 T 12-10-2018 IPR005119 LysR, substrate-binding R615_17285 0e96a27a246426a89a25f42447e15e41 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 5.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_17285 0e96a27a246426a89a25f42447e15e41 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 5.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_17285 0e96a27a246426a89a25f42447e15e41 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 5.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Pfam PF00639 PPIC-type PPIASE domain 193 286 1.9E-21 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 SUPERFAMILY SSF54534 297 397 1.57E-31 T 12-10-2018 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Gene3D G3DSA:1.10.4030.30 43 294 3.8E-76 T 12-10-2018 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Gene3D G3DSA:3.10.50.40 295 433 2.1E-41 T 12-10-2018 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Pfam PF09312 SurA N-terminal domain 42 157 2.8E-38 T 12-10-2018 IPR015391 SurA N-terminal R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 SUPERFAMILY SSF54534 187 291 1.11E-28 T 12-10-2018 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Pfam PF13616 PPIC-type PPIASE domain 292 396 8.3E-33 T 12-10-2018 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 SUPERFAMILY SSF109998 42 217 6.08E-41 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Gene3D G3DSA:3.10.50.40 187 289 3.8E-76 T 12-10-2018 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 334 355 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 R615_14405 5b313bdc4c33291ecf9a13e147bb9c37 442 Hamap MF_01183 Chaperone SurA [surA]. 23 441 32.711 T 12-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.1E-33 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.1E-33 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.1E-33 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 2.1E-33 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 Gene3D G3DSA:3.20.20.70 2 291 5.5E-110 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 12-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 SMART SM01130 1 289 1.5E-139 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 PIRSF PIRSF001365 1 291 1.9E-95 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 SUPERFAMILY SSF51569 1 288 5.86E-101 T 12-10-2018 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 285 6.0E-111 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 65.29 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_07020 0dd16b5d0e84e1a020d45d392ba0b303 291 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 9.6E-105 T 12-10-2018 IPR002220 DapA-like GO:0016829 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 PIRSF PIRSF000429 2 391 1.0E-134 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 Gene3D G3DSA:3.40.47.10 138 385 2.1E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 Gene3D G3DSA:3.40.47.10 8 271 2.1E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 389 5.3E-139 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 Pfam PF00108 Thiolase, N-terminal domain 8 256 2.2E-83 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 5 391 59.224 T 12-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 Pfam PF02803 Thiolase, C-terminal domain 265 389 2.1E-48 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 7 390 1.3E-201 T 12-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 SUPERFAMILY SSF53901 4 262 6.29E-76 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_11670 84a7f43061233f91288e7d0c2ad0673a 391 SUPERFAMILY SSF53901 266 390 5.19E-43 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_10970 732d3b436f87e20c825555020941e7fd 395 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 11 375 55.873 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 R615_10970 732d3b436f87e20c825555020941e7fd 395 Gene3D G3DSA:3.20.20.105 2 379 1.2E-162 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 R615_10970 732d3b436f87e20c825555020941e7fd 395 SUPERFAMILY SSF51713 10 375 1.31E-158 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 R615_10970 732d3b436f87e20c825555020941e7fd 395 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 20 379 4.2E-158 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 R615_10970 732d3b436f87e20c825555020941e7fd 395 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 19 379 2.7E-166 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 R615_10970 732d3b436f87e20c825555020941e7fd 395 Pfam PF01702 Queuine tRNA-ribosyltransferase 140 372 1.8E-90 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 R615_09960 c99d01cbc0b8bdb89c5440674ae97c1f 295 SUPERFAMILY SSF161111 14 210 2.62E-52 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09960 c99d01cbc0b8bdb89c5440674ae97c1f 295 Pfam PF01545 Cation efflux family 21 209 5.7E-42 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_09960 c99d01cbc0b8bdb89c5440674ae97c1f 295 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 289 2.1E-73 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_09960 c99d01cbc0b8bdb89c5440674ae97c1f 295 SUPERFAMILY SSF160240 214 286 8.11E-7 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 R615_09960 c99d01cbc0b8bdb89c5440674ae97c1f 295 Gene3D G3DSA:1.20.1510.10 15 209 9.7E-45 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_12750 4973d4a16511fd1933edb2da4a197020 135 SUPERFAMILY SSF56214 12 132 2.88E-26 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 R615_12750 4973d4a16511fd1933edb2da4a197020 135 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 12 131 6.5E-33 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 R615_12750 4973d4a16511fd1933edb2da4a197020 135 Gene3D G3DSA:3.90.470.20 8 135 2.2E-34 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 R615_12750 4973d4a16511fd1933edb2da4a197020 135 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 13 135 22.003 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 R615_12750 4973d4a16511fd1933edb2da4a197020 135 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 12 132 4.4E-25 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 R615_12750 4973d4a16511fd1933edb2da4a197020 135 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 18 133 4.0E-17 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 R615_12750 4973d4a16511fd1933edb2da4a197020 135 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 14 108 5.7E-18 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 R615_14310 316f139bca8c086aca7973ae69a8553d 100 SUPERFAMILY SSF55248 2 98 5.23E-29 T 12-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 R615_14310 316f139bca8c086aca7973ae69a8553d 100 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 2 97 20.915 T 12-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 R615_14310 316f139bca8c086aca7973ae69a8553d 100 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 4 95 8.5E-26 T 12-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 R615_14310 316f139bca8c086aca7973ae69a8553d 100 Gene3D G3DSA:3.30.1360.20 3 100 5.1E-28 T 12-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 R615_00950 9238f3a7806419e25b403264f8dea964 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 7.0E-29 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_00950 9238f3a7806419e25b403264f8dea964 78 SUPERFAMILY SSF143800 2 77 4.71E-32 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00950 9238f3a7806419e25b403264f8dea964 78 Gene3D G3DSA:2.30.170.40 2 78 4.0E-34 T 12-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00950 9238f3a7806419e25b403264f8dea964 78 Pfam PF00830 Ribosomal L28 family 3 62 1.5E-28 T 12-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00950 9238f3a7806419e25b403264f8dea964 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 71 21.479 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_10890 1b8ec5dcce5ea3f157ebfe4292e2c016 221 Gene3D G3DSA:2.60.120.10 2 160 1.4E-60 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_10890 1b8ec5dcce5ea3f157ebfe4292e2c016 221 SUPERFAMILY SSF51182 3 130 7.47E-36 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_10890 1b8ec5dcce5ea3f157ebfe4292e2c016 221 SUPERFAMILY SSF51182 120 219 1.74E-26 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_10890 1b8ec5dcce5ea3f157ebfe4292e2c016 221 Pfam PF12973 ChrR Cupin-like domain 19 109 1.9E-38 T 12-10-2018 IPR025979 ChrR-like cupin domain R615_10890 1b8ec5dcce5ea3f157ebfe4292e2c016 221 Pfam PF12973 ChrR Cupin-like domain 129 215 5.1E-33 T 12-10-2018 IPR025979 ChrR-like cupin domain R615_01400 992681b03d72240154911b1698bae37c 377 Gene3D G3DSA:2.40.50.140 303 350 2.9E-11 T 12-10-2018 R615_01400 992681b03d72240154911b1698bae37c 377 SUPERFAMILY SSF50331 254 374 2.14E-18 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal R615_01400 992681b03d72240154911b1698bae37c 377 Pfam PF08402 TOBE domain 296 375 1.6E-16 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 R615_01400 992681b03d72240154911b1698bae37c 377 Gene3D G3DSA:3.40.50.300 20 238 1.1E-65 T 12-10-2018 R615_01400 992681b03d72240154911b1698bae37c 377 Pfam PF00005 ABC transporter 37 178 4.1E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_01400 992681b03d72240154911b1698bae37c 377 SUPERFAMILY SSF52540 20 261 2.48E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01400 992681b03d72240154911b1698bae37c 377 Gene3D G3DSA:2.40.50.940 239 302 2.9E-11 T 12-10-2018 R615_01400 992681b03d72240154911b1698bae37c 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 51 375 1.2E-127 T 12-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 R615_01400 992681b03d72240154911b1698bae37c 377 SMART SM00382 45 228 1.9E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_01400 992681b03d72240154911b1698bae37c 377 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 30 238 6.8E-80 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 Pfam PF03167 Uracil DNA glycosylase superfamily 77 233 2.1E-22 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 82 91 - T 12-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 29 245 39.89 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 SMART SM00986 74 234 9.0E-37 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 SMART SM00987 74 234 9.0E-37 T 12-10-2018 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 Gene3D G3DSA:3.40.470.10 12 246 2.0E-97 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_05060 a3c6ba04637ca9b58144d5004cc40dc0 246 SUPERFAMILY SSF52141 28 245 5.23E-90 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 R615_17495 a3cae2247dd50adfcfebbf7fda6f4eb8 467 Gene3D G3DSA:3.40.210.20 230 408 4.0E-15 T 12-10-2018 R615_17495 a3cae2247dd50adfcfebbf7fda6f4eb8 467 Gene3D G3DSA:2.60.40.2490 260 449 4.0E-15 T 12-10-2018 R615_17495 a3cae2247dd50adfcfebbf7fda6f4eb8 467 Pfam PF15515 MvaI/BcnI restriction endonuclease family 228 450 7.5E-25 T 12-10-2018 IPR029127 MvaI/BcnI restriction endonuclease R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 12-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 Pfam PF00303 Thymidylate synthase 2 264 1.0E-125 T 12-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 Gene3D G3DSA:3.30.572.10 1 264 7.4E-132 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 SUPERFAMILY SSF55831 1 264 1.01E-129 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 85 264 4.0E-94 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 84 6.3E-42 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.481 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 2.9E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 2.9E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 2.9E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 2.9E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_16825 cc3c9f51f5d64a46ee4b5725c8196c29 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 2.9E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 R615_09700 381320fc1eec753ee8049b64b882848f 471 Gene3D G3DSA:3.40.50.300 31 308 3.8E-75 T 12-10-2018 R615_09700 381320fc1eec753ee8049b64b882848f 471 SMART SM00487 115 321 9.0E-52 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_09700 381320fc1eec753ee8049b64b882848f 471 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 95 471 51.869 T 12-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 R615_09700 381320fc1eec753ee8049b64b882848f 471 SUPERFAMILY SSF52540 170 457 5.63E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09700 381320fc1eec753ee8049b64b882848f 471 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 250 258 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_09700 381320fc1eec753ee8049b64b882848f 471 Pfam PF00270 DEAD/DEAH box helicase 120 292 5.3E-47 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_09700 381320fc1eec753ee8049b64b882848f 471 Gene3D G3DSA:3.40.50.300 312 469 1.1E-47 T 12-10-2018 R615_09700 381320fc1eec753ee8049b64b882848f 471 Pfam PF00271 Helicase conserved C-terminal domain 329 438 3.0E-28 T 12-10-2018 IPR001650 Helicase, C-terminal R615_09700 381320fc1eec753ee8049b64b882848f 471 SMART SM00490 357 438 2.1E-30 T 12-10-2018 IPR001650 Helicase, C-terminal R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 107 131 - T 12-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 25 133 2.1E-50 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 Gene3D G3DSA:1.20.120.910 13 143 8.6E-37 T 12-10-2018 R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 102 136 1.1E-10 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 21 143 29.565 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 SUPERFAMILY SSF109635 9 103 2.48E-33 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily R615_02645 27fd8048077f612ab0c75b5583d6cbb8 144 SUPERFAMILY SSF57716 104 141 1.57E-9 T 12-10-2018 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 Gene3D G3DSA:3.30.860.10 1 91 2.8E-40 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 Pfam PF00203 Ribosomal protein S19 3 83 2.4E-36 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 1.9E-44 T 12-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.881 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.3E-23 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.3E-23 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.3E-23 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 PIRSF PIRSF002144 1 91 1.5E-31 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 12-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16160 221c6f01c1cb15eb484690e9a9f51805 91 SUPERFAMILY SSF54570 3 83 2.62E-35 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 235 2.0E-105 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 251 115.484 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 2.4E-67 T 12-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 Gene3D G3DSA:3.40.1280.10 1 161 2.1E-65 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 SUPERFAMILY SSF75217 2 245 3.07E-102 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 Gene3D G3DSA:1.10.1270.20 162 250 4.6E-36 T 12-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 R615_04520 81669ba60fb1d224de5e7cebcb41bf65 251 PIRSF PIRSF000386 1 248 7.0E-102 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 R615_09580 7888c793716b7e94cd750cc16fa1128a 736 SMART SM00327 27 213 2.1E-18 T 12-10-2018 IPR002035 von Willebrand factor, type A R615_09580 7888c793716b7e94cd750cc16fa1128a 736 Pfam PF00092 von Willebrand factor type A domain 29 205 8.5E-15 T 12-10-2018 IPR002035 von Willebrand factor, type A R615_09580 7888c793716b7e94cd750cc16fa1128a 736 SUPERFAMILY SSF53300 22 211 1.59E-25 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_09580 7888c793716b7e94cd750cc16fa1128a 736 Gene3D G3DSA:3.40.50.410 31 219 4.2E-29 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_00895 ae75251d1d550801b2f4533672d02a79 297 Pfam PF08340 Domain of unknown function (DUF1732) 213 297 3.2E-34 T 12-10-2018 IPR013551 Domain of unknown function DUF1732 R615_00895 ae75251d1d550801b2f4533672d02a79 297 Pfam PF03755 YicC-like family, N-terminal region 3 163 1.7E-40 T 12-10-2018 IPR013527 YicC-like, N-terminal R615_00895 ae75251d1d550801b2f4533672d02a79 297 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 297 7.3E-87 T 12-10-2018 IPR005229 Conserved hypothetical protein CHP00255 R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 SUPERFAMILY SSF141868 449 686 4.05E-46 T 12-10-2018 IPR035919 EAL domain superfamily R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 SUPERFAMILY SSF55785 132 246 7.15E-12 T 12-10-2018 IPR035965 PAS domain superfamily R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 Pfam PF13188 PAS domain 146 201 1.9E-6 T 12-10-2018 IPR000014 PAS domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 SMART SM00091 145 211 7.8E-4 T 12-10-2018 IPR000014 PAS domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 238 1.2E-9 T 12-10-2018 IPR000014 PAS domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 Pfam PF00990 Diguanylate cyclase, GGDEF domain 271 422 6.9E-24 T 12-10-2018 IPR000160 GGDEF domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 Gene3D G3DSA:3.20.20.450 447 698 1.1E-53 T 12-10-2018 IPR035919 EAL domain superfamily R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 Gene3D G3DSA:3.30.450.20 133 254 2.0E-12 T 12-10-2018 R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 SMART SM00052 447 690 1.5E-17 T 12-10-2018 IPR001633 EAL domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 SUPERFAMILY SSF55073 274 423 3.53E-28 T 12-10-2018 IPR029787 Nucleotide cyclase R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 SMART SM00267 258 434 1.1E-22 T 12-10-2018 IPR000160 GGDEF domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 Pfam PF00563 EAL domain 450 684 4.2E-47 T 12-10-2018 IPR001633 EAL domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 268 415 1.1E-19 T 12-10-2018 IPR000160 GGDEF domain R615_02380 b0aa90cdd20632cb240e7bd9afc6fbda 701 Gene3D G3DSA:3.30.70.270 259 434 1.2E-36 T 12-10-2018 R615_08180 f040ab2e5657c236800994bfb082ae12 484 Gene3D G3DSA:3.40.50.300 28 186 2.7E-13 T 12-10-2018 R615_08180 f040ab2e5657c236800994bfb082ae12 484 Pfam PF13401 AAA domain 42 171 5.1E-22 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08180 f040ab2e5657c236800994bfb082ae12 484 Gene3D G3DSA:1.10.101.10 408 482 1.9E-5 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 R615_08180 f040ab2e5657c236800994bfb082ae12 484 SUPERFAMILY SSF47090 404 479 6.91E-6 T 12-10-2018 IPR036365 PGBD-like superfamily R615_08180 f040ab2e5657c236800994bfb082ae12 484 SUPERFAMILY SSF52540 5 269 1.25E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08180 f040ab2e5657c236800994bfb082ae12 484 SMART SM00382 42 195 1.0E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08865 ce0b8217800b4b9f4d7ba71a5280596e 290 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 31 268 1.9E-66 T 12-10-2018 IPR022488 Polyphosphate kinase-2-related R615_08865 ce0b8217800b4b9f4d7ba71a5280596e 290 Gene3D G3DSA:3.40.50.300 3 285 1.6E-107 T 12-10-2018 R615_08865 ce0b8217800b4b9f4d7ba71a5280596e 290 PIRSF PIRSF028756 4 290 1.2E-82 T 12-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 R615_08865 ce0b8217800b4b9f4d7ba71a5280596e 290 SUPERFAMILY SSF52540 64 260 1.5E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08865 ce0b8217800b4b9f4d7ba71a5280596e 290 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 6 279 1.2E-118 T 12-10-2018 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 KEGG: 00190+2.7.4.1 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 Pfam PF03441 FAD binding domain of DNA photolyase 276 453 1.2E-45 T 12-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 PRINTS PR00147 DNA photolyase signature 327 343 1.1E-10 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 PRINTS PR00147 DNA photolyase signature 386 400 1.1E-10 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 PRINTS PR00147 DNA photolyase signature 347 365 1.1E-10 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 Gene3D G3DSA:3.40.50.620 1 123 9.5E-21 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_03780 2947edc1ce009747b1707e5c9184f53c 464 SUPERFAMILY SSF52425 2 162 7.72E-31 T 12-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 Gene3D G3DSA:1.10.579.10 302 461 2.2E-52 T 12-10-2018 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 TIGRFAM TIGR02765 crypto_DASH: cryptochrome, DASH family 2 427 3.2E-118 T 12-10-2018 IPR014133 Cryptochrome DASH GO:0003913|GO:0006281 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 Pfam PF00875 DNA photolyase 3 158 6.2E-22 T 12-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 Gene3D G3DSA:1.25.40.80 127 295 4.6E-41 T 12-10-2018 R615_03780 2947edc1ce009747b1707e5c9184f53c 464 SUPERFAMILY SSF48173 200 453 1.03E-70 T 12-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 R615_17410 373e6d2949c990eb61c726c57d8825de 547 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 2.6E-19 T 12-10-2018 R615_17410 373e6d2949c990eb61c726c57d8825de 547 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 307 319 2.6E-19 T 12-10-2018 R615_17410 373e6d2949c990eb61c726c57d8825de 547 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 266 2.6E-19 T 12-10-2018 R615_17410 373e6d2949c990eb61c726c57d8825de 547 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 151 172 2.6E-19 T 12-10-2018 R615_17410 373e6d2949c990eb61c726c57d8825de 547 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 104 124 2.6E-19 T 12-10-2018 R615_17410 373e6d2949c990eb61c726c57d8825de 547 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 76 101 2.6E-19 T 12-10-2018 R615_17410 373e6d2949c990eb61c726c57d8825de 547 Pfam PF00361 Proton-conducting membrane transporter 127 400 3.3E-37 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_09615 91ee8c0192841c7dea08759bcabbc5f9 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 97 23.132 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family R615_09615 91ee8c0192841c7dea08759bcabbc5f9 108 SUPERFAMILY SSF82607 10 102 7.59E-34 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily R615_09615 91ee8c0192841c7dea08759bcabbc5f9 108 Gene3D G3DSA:3.30.1310.10 1 108 6.5E-44 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily R615_09615 91ee8c0192841c7dea08759bcabbc5f9 108 Pfam PF02575 YbaB/EbfC DNA-binding family 10 98 5.5E-33 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family R615_09615 91ee8c0192841c7dea08759bcabbc5f9 108 PIRSF PIRSF004555 3 108 1.7E-36 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family R615_09615 91ee8c0192841c7dea08759bcabbc5f9 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 104 3.6E-32 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family R615_06045 89fd621dbc25041e7f5eec5fa18b02d8 116 Pfam PF03960 ArsC family 7 115 2.8E-20 T 12-10-2018 IPR006660 Arsenate reductase-like R615_06045 89fd621dbc25041e7f5eec5fa18b02d8 116 SUPERFAMILY SSF52833 4 116 8.5E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_06045 89fd621dbc25041e7f5eec5fa18b02d8 116 Gene3D G3DSA:3.40.30.10 1 116 1.3E-50 T 12-10-2018 R615_06045 89fd621dbc25041e7f5eec5fa18b02d8 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 7.7E-47 T 12-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 R615_12830 d82cd20150302d5bcc32da072702a39b 281 Pfam PF08668 HDOD domain 24 205 6.0E-45 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_12830 d82cd20150302d5bcc32da072702a39b 281 SUPERFAMILY SSF109604 12 271 1.88E-56 T 12-10-2018 R615_12830 d82cd20150302d5bcc32da072702a39b 281 Gene3D G3DSA:1.10.3210.10 4 278 2.5E-61 T 12-10-2018 R615_13905 85c0a3eb67cd8d059a18be4a5b5956b3 361 Pfam PF02277 Phosphoribosyltransferase 20 351 3.6E-122 T 12-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 R615_13905 85c0a3eb67cd8d059a18be4a5b5956b3 361 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 23 351 9.0E-127 T 12-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 R615_13905 85c0a3eb67cd8d059a18be4a5b5956b3 361 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 18 353 34.973 T 12-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 R615_13905 85c0a3eb67cd8d059a18be4a5b5956b3 361 Gene3D G3DSA:1.10.1610.10 30 351 3.7E-120 T 12-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 R615_13905 85c0a3eb67cd8d059a18be4a5b5956b3 361 SUPERFAMILY SSF52733 10 352 1.7E-110 T 12-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 R615_13905 85c0a3eb67cd8d059a18be4a5b5956b3 361 Gene3D G3DSA:3.40.50.10210 62 334 3.7E-120 T 12-10-2018 R615_13585 205e7a8518840f05f53847933b3d11ef 424 Gene3D G3DSA:1.20.1250.20 201 381 3.6E-16 T 12-10-2018 R615_13585 205e7a8518840f05f53847933b3d11ef 424 Gene3D G3DSA:1.20.1250.20 3 190 1.3E-12 T 12-10-2018 R615_13585 205e7a8518840f05f53847933b3d11ef 424 Pfam PF07690 Major Facilitator Superfamily 206 381 9.8E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_13585 205e7a8518840f05f53847933b3d11ef 424 Pfam PF07690 Major Facilitator Superfamily 12 186 2.0E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_13585 205e7a8518840f05f53847933b3d11ef 424 SUPERFAMILY SSF103473 10 377 1.19E-37 T 12-10-2018 IPR036259 MFS transporter superfamily R615_09245 435d4e9ababc1f7e257834d6fa9ba91a 388 Gene3D G3DSA:3.90.1150.10 24 375 2.9E-98 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_09245 435d4e9ababc1f7e257834d6fa9ba91a 388 Gene3D G3DSA:3.40.640.10 38 294 2.9E-98 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_09245 435d4e9ababc1f7e257834d6fa9ba91a 388 Pfam PF00266 Aminotransferase class-V 28 353 3.4E-51 T 12-10-2018 IPR000192 Aminotransferase class V domain R615_09245 435d4e9ababc1f7e257834d6fa9ba91a 388 SUPERFAMILY SSF53383 12 385 5.6E-84 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_02475 a270bf0ea25951306a4de9c7dcaad2a2 162 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 135 5.4E-42 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 R615_02475 a270bf0ea25951306a4de9c7dcaad2a2 162 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 125 1.1E-35 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 R615_02475 a270bf0ea25951306a4de9c7dcaad2a2 162 SUPERFAMILY SSF52540 22 146 1.87E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02475 a270bf0ea25951306a4de9c7dcaad2a2 162 Gene3D G3DSA:3.40.50.300 1 150 5.6E-42 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:2.40.50.100 1024 1127 7.1E-28 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:1.10.40.90 374 416 8.7E-22 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 11 1378 18.858 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:1.10.132.30 641 790 8.1E-64 T 12-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 395 1.5E-8 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 3.1E-27 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1316 3.7E-76 T 12-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:1.10.150.390 1317 1377 1.5E-26 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 752 2.3E-18 T 12-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:1.10.274.100 490 640 6.6E-39 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:2.40.50.100 1152 1216 7.2E-62 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 342 2.4E-85 T 12-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 SUPERFAMILY SSF64484 16 1364 0.0 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 SMART SM00663 235 514 7.6E-179 T 12-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 643 6.1E-28 T 12-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:1.10.1790.20 1136 1315 7.2E-62 T 12-10-2018 R615_16210 a00f380a7e56b31585685f3e28128bb6 1407 Gene3D G3DSA:2.40.50.100 949 1023 1.1E-27 T 12-10-2018 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 8 181 2.8E-55 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 Gene3D G3DSA:1.10.240.10 264 369 3.4E-36 T 12-10-2018 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 SUPERFAMILY SSF52374 9 401 1.42E-83 T 12-10-2018 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 20 36 2.0E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 149 170 2.0E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 71 90 2.0E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 Pfam PF00579 tRNA synthetases class I (W and Y) 9 174 2.6E-49 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 Pfam PF00579 tRNA synthetases class I (W and Y) 246 353 1.9E-10 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_06175 9d2ec241daa54eb20f855d88d305bb87 404 Gene3D G3DSA:3.40.50.620 7 240 4.1E-71 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_00260 47c958a0101689da64e9568faecb5b6b 675 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 6 672 1.8E-304 T 12-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 R615_00260 47c958a0101689da64e9568faecb5b6b 675 SUPERFAMILY SSF52540 5 642 6.43E-162 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00260 47c958a0101689da64e9568faecb5b6b 675 Gene3D G3DSA:1.10.10.160 112 185 4.6E-93 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily R615_00260 47c958a0101689da64e9568faecb5b6b 675 Gene3D G3DSA:3.40.50.300 278 638 1.8E-122 T 12-10-2018 R615_00260 47c958a0101689da64e9568faecb5b6b 675 Gene3D G3DSA:1.10.486.10 381 550 1.8E-122 T 12-10-2018 R615_00260 47c958a0101689da64e9568faecb5b6b 675 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 269 2.3E-70 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 R615_00260 47c958a0101689da64e9568faecb5b6b 675 Pfam PF13361 UvrD-like helicase C-terminal domain 275 618 3.0E-67 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 R615_00260 47c958a0101689da64e9568faecb5b6b 675 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 5 673 38.594 T 12-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 R615_00260 47c958a0101689da64e9568faecb5b6b 675 Gene3D G3DSA:3.40.50.300 8 270 4.6E-93 T 12-10-2018 R615_04725 8d4c1150f8ebfa2d2595de865798a276 217 Gene3D G3DSA:3.90.1210.10 92 157 3.2E-11 T 12-10-2018 R615_04725 8d4c1150f8ebfa2d2595de865798a276 217 SMART SM00858 93 155 6.2E-9 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 R615_04725 8d4c1150f8ebfa2d2595de865798a276 217 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 82 216 3.4E-37 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal R615_04725 8d4c1150f8ebfa2d2595de865798a276 217 Pfam PF13144 Chaperone for flagella basal body P-ring formation 32 216 7.5E-42 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal R615_04725 8d4c1150f8ebfa2d2595de865798a276 217 Gene3D G3DSA:2.30.30.760 158 217 1.3E-11 T 12-10-2018 R615_06185 8079f369c95bc409233ad6e0b081bc9a 320 Gene3D G3DSA:1.10.10.10 83 181 2.1E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_06185 8079f369c95bc409233ad6e0b081bc9a 320 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 6 173 3.2E-36 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 R615_06185 8079f369c95bc409233ad6e0b081bc9a 320 Gene3D G3DSA:1.10.10.10 2 82 2.0E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_06185 8079f369c95bc409233ad6e0b081bc9a 320 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 169 1.2E-53 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 R615_06185 8079f369c95bc409233ad6e0b081bc9a 320 SUPERFAMILY SSF46785 3 83 6.26E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_06185 8079f369c95bc409233ad6e0b081bc9a 320 SUPERFAMILY SSF46785 84 160 1.01E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_11480 27e383bd0d06a1076a7bec4d8c6f6d2f 174 Pfam PF14316 Domain of unknown function (DUF4381) 12 155 7.2E-29 T 12-10-2018 IPR025489 Protein of unknown function (DUF4381 R615_14000 bc23bc6cb4e91a73e992fc40b3ada8fa 192 Pfam PF04205 FMN-binding domain 98 174 4.5E-5 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 R615_14000 bc23bc6cb4e91a73e992fc40b3ada8fa 192 SMART SM00900 97 177 0.0013 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Pfam PF00512 His Kinase A (phospho-acceptor) domain 169 233 3.7E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SUPERFAMILY SSF55874 223 396 5.11E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Gene3D G3DSA:1.10.287.130 159 236 1.1E-23 T 12-10-2018 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Pfam PF08448 PAS fold 45 149 4.2E-7 T 12-10-2018 IPR013656 PAS fold-4 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SMART SM00387 281 397 5.8E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 375 4.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 336 4.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 394 4.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Gene3D G3DSA:3.30.450.20 27 158 1.8E-11 T 12-10-2018 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SMART SM00388 169 234 2.5E-24 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Gene3D G3DSA:3.40.50.2300 542 681 2.8E-43 T 12-10-2018 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Gene3D G3DSA:3.30.565.10 237 399 4.0E-46 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SUPERFAMILY SSF52172 555 674 1.71E-38 T 12-10-2018 IPR011006 CheY-like superfamily R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SMART SM00448 558 671 8.2E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Gene3D G3DSA:3.40.50.2300 409 536 1.9E-6 T 12-10-2018 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Pfam PF00072 Response regulator receiver domain 560 671 2.0E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 155 3.7E-8 T 12-10-2018 IPR000014 PAS domain R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 281 394 4.1E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SUPERFAMILY SSF55785 34 147 3.35E-10 T 12-10-2018 IPR035965 PAS domain superfamily R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SUPERFAMILY SSF52172 416 543 7.39E-8 T 12-10-2018 IPR011006 CheY-like superfamily R615_12220 3c1fad7fcca03c7bf330caf79dd57a8d 685 SUPERFAMILY SSF47384 156 235 1.55E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_07540 8707c7e9acfb828179440016c9674d4e 345 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 30 212 1.6E-29 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_07540 8707c7e9acfb828179440016c9674d4e 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 1.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_07540 8707c7e9acfb828179440016c9674d4e 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 1.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_07540 8707c7e9acfb828179440016c9674d4e 345 Pfam PF12833 Helix-turn-helix domain 263 340 9.7E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07540 8707c7e9acfb828179440016c9674d4e 345 SMART SM00342 256 338 4.3E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07540 8707c7e9acfb828179440016c9674d4e 345 Gene3D G3DSA:1.10.10.60 240 345 2.2E-25 T 12-10-2018 R615_07540 8707c7e9acfb828179440016c9674d4e 345 SUPERFAMILY SSF46689 292 341 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_08635 3f165606ff1eb6495bbb99e4571a9b89 119 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 34 113 9.9E-34 T 12-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 R615_08635 3f165606ff1eb6495bbb99e4571a9b89 119 Gene3D G3DSA:3.30.1390.10 12 118 1.3E-41 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like R615_08635 3f165606ff1eb6495bbb99e4571a9b89 119 SUPERFAMILY SSF54736 32 115 1.88E-31 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like R615_08635 3f165606ff1eb6495bbb99e4571a9b89 119 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 12 112 27.912 T 12-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS R615_16610 017f341cac6a29edcf7592cb6676e752 261 Gene3D G3DSA:3.40.190.10 104 207 4.0E-21 T 12-10-2018 R615_16610 017f341cac6a29edcf7592cb6676e752 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 247 2.7E-16 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_16610 017f341cac6a29edcf7592cb6676e752 261 Gene3D G3DSA:3.40.190.10 37 247 4.0E-21 T 12-10-2018 R615_16610 017f341cac6a29edcf7592cb6676e752 261 SUPERFAMILY SSF53850 18 247 2.99E-29 T 12-10-2018 R615_02435 77af9d6c63182c86f5d44aa5c47a4aab 574 Gene3D G3DSA:3.30.450.40 395 554 6.4E-8 T 12-10-2018 IPR029016 GAF-like domain superfamily R615_02435 77af9d6c63182c86f5d44aa5c47a4aab 574 Pfam PF08668 HDOD domain 24 134 7.3E-6 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_02435 77af9d6c63182c86f5d44aa5c47a4aab 574 SUPERFAMILY SSF55781 409 557 9.32E-9 T 12-10-2018 R615_02435 77af9d6c63182c86f5d44aa5c47a4aab 574 SUPERFAMILY SSF109604 15 217 1.91E-13 T 12-10-2018 R615_02435 77af9d6c63182c86f5d44aa5c47a4aab 574 Gene3D G3DSA:1.10.3210.10 17 277 1.1E-12 T 12-10-2018 R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 SUPERFAMILY SSF88946 7 103 2.28E-20 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 Gene3D G3DSA:1.10.10.10 86 183 1.4E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 Pfam PF04545 Sigma-70, region 4 130 178 1.4E-11 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 Pfam PF04542 Sigma-70 region 2 24 91 4.1E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 181 5.2E-25 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 Gene3D G3DSA:1.10.1740.10 6 85 7.7E-26 T 12-10-2018 R615_15975 e1adfa19ea32adbb6a7315ce8a0fb0a1 183 SUPERFAMILY SSF88659 95 183 1.59E-13 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_16720 d82860471360aee2b14fa2d50a620c3a 255 SUPERFAMILY SSF52540 14 253 4.67E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16720 d82860471360aee2b14fa2d50a620c3a 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 254 1.0E-7 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal R615_16720 d82860471360aee2b14fa2d50a620c3a 255 Gene3D G3DSA:3.40.50.300 10 255 1.4E-52 T 12-10-2018 R615_16720 d82860471360aee2b14fa2d50a620c3a 255 Pfam PF00005 ABC transporter 30 184 6.6E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_16720 d82860471360aee2b14fa2d50a620c3a 255 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 14 255 1.1E-114 T 12-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 158 1.2E-8 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 6.7E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 32 5.7E-11 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 SUPERFAMILY SSF56645 39 281 3.93E-53 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Gene3D G3DSA:2.40.110.10 162 282 1.2E-91 T 12-10-2018 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Gene3D G3DSA:1.10.540.10 49 161 1.2E-91 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 470 589 1.3E-32 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 SUPERFAMILY SSF47203 288 464 4.83E-48 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 1.8E-19 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_14190 25ef1e5d4f23aff6b358f74f8e310ec5 596 Gene3D G3DSA:1.20.140.10 283 450 1.2E-91 T 12-10-2018 R615_15590 4e127c673381548c5d0eb81e263c8ade 126 SUPERFAMILY SSF142906 1 115 8.37E-38 T 12-10-2018 IPR038056 YjbR-like superfamily R615_15590 4e127c673381548c5d0eb81e263c8ade 126 Pfam PF04237 YjbR 12 102 4.7E-22 T 12-10-2018 IPR007351 Uncharacterised protein YjbR R615_15590 4e127c673381548c5d0eb81e263c8ade 126 Gene3D G3DSA:3.90.1150.30 1 123 6.3E-39 T 12-10-2018 IPR038056 YjbR-like superfamily R615_04185 ffaca934f659e26f90239a1cb194d0e2 93 SUPERFAMILY SSF54534 4 88 9.81E-28 T 12-10-2018 R615_04185 ffaca934f659e26f90239a1cb194d0e2 93 Gene3D G3DSA:3.10.50.40 2 93 2.5E-34 T 12-10-2018 R615_04185 ffaca934f659e26f90239a1cb194d0e2 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 31 51 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 R615_04185 ffaca934f659e26f90239a1cb194d0e2 93 Pfam PF13616 PPIC-type PPIASE domain 16 90 2.4E-21 T 12-10-2018 R615_14755 bc459d4f537a55b0e0217a48ce8ad5d9 305 Pfam PF10118 Predicted metal-dependent hydrolase 24 270 4.0E-86 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_14755 bc459d4f537a55b0e0217a48ce8ad5d9 305 PIRSF PIRSF007580 7 287 9.7E-80 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 Gene3D G3DSA:3.30.160.270 395 503 3.8E-9 T 12-10-2018 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 4 512 43.474 T 12-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 Gene3D G3DSA:3.20.20.70 2 279 7.6E-107 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 501 4.7E-32 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 SUPERFAMILY SSF51569 3 293 5.68E-99 T 12-10-2018 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 6 500 1.4E-219 T 12-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 SMART SM00917 372 503 2.1E-38 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 Pfam PF00682 HMGL-like 7 275 5.3E-97 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 SUPERFAMILY SSF110921 395 502 7.45E-24 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 201 214 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_01525 9e1d9d5cec2e609d223c3879e03a7156 516 Gene3D G3DSA:1.10.238.260 282 394 4.6E-36 T 12-10-2018 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 SUPERFAMILY SSF52374 5 334 1.34E-78 T 12-10-2018 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 Gene3D G3DSA:3.40.50.620 5 334 7.5E-110 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 Gene3D G3DSA:1.10.240.10 200 302 7.5E-110 T 12-10-2018 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 Pfam PF00579 tRNA synthetases class I (W and Y) 4 286 3.7E-51 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 3.1E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 3.1E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 205 215 3.1E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 151 172 3.1E-19 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_06170 f5faab4780116b99e8d0906aa5d79d43 338 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 333 7.6E-84 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 R615_17350 9bf3f1a43a9c72cfe1d25dec0c5ebe4e 304 SMART SM00470 48 140 1.3E-37 T 12-10-2018 IPR003115 ParB/Sulfiredoxin R615_17350 9bf3f1a43a9c72cfe1d25dec0c5ebe4e 304 Pfam PF02195 ParB-like nuclease domain 50 140 2.9E-28 T 12-10-2018 IPR003115 ParB/Sulfiredoxin R615_17350 9bf3f1a43a9c72cfe1d25dec0c5ebe4e 304 Gene3D G3DSA:3.90.1530.30 61 126 5.0E-27 T 12-10-2018 R615_17350 9bf3f1a43a9c72cfe1d25dec0c5ebe4e 304 SUPERFAMILY SSF110849 47 184 3.4E-34 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily R615_17350 9bf3f1a43a9c72cfe1d25dec0c5ebe4e 304 Gene3D G3DSA:1.10.10.2830 127 240 7.1E-34 T 12-10-2018 R615_17350 9bf3f1a43a9c72cfe1d25dec0c5ebe4e 304 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 45 217 3.8E-59 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 SUPERFAMILY SSF55681 2 201 1.82E-59 T 12-10-2018 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 70 123 7.0E-14 T 12-10-2018 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 PIRSF PIRSF016262 1 215 2.3E-54 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 66 81 - T 12-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 Gene3D G3DSA:3.30.930.10 1 205 3.2E-57 T 12-10-2018 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 Pfam PF03099 Biotin/lipoate A/B protein ligase family 57 154 6.6E-6 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 Hamap MF_00013 Octanoyltransferase [lipB]. 1 208 34.398 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_03210 c95364e7ca62f41e4135cc20bba6f671 225 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 20 186 8.4E-64 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_07225 05cf9b505680c70f20e5b4ea16996137 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 2.4E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_07225 05cf9b505680c70f20e5b4ea16996137 216 Gene3D G3DSA:1.10.357.10 1 212 7.4E-67 T 12-10-2018 R615_07225 05cf9b505680c70f20e5b4ea16996137 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 3.2E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_07225 05cf9b505680c70f20e5b4ea16996137 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 3.2E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_07225 05cf9b505680c70f20e5b4ea16996137 216 SUPERFAMILY SSF48498 83 210 5.56E-34 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_07225 05cf9b505680c70f20e5b4ea16996137 216 SUPERFAMILY SSF46689 4 76 1.03E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_07225 05cf9b505680c70f20e5b4ea16996137 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site R615_09070 532a8e17f52591f8fdf49fdcb8f4691d 234 Gene3D G3DSA:1.10.287.80 138 226 9.5E-39 T 12-10-2018 R615_09070 532a8e17f52591f8fdf49fdcb8f4691d 234 Gene3D G3DSA:3.40.1380.10 1 137 9.5E-39 T 12-10-2018 R615_09070 532a8e17f52591f8fdf49fdcb8f4691d 234 SUPERFAMILY SSF52943 1 228 1.22E-33 T 12-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_09070 532a8e17f52591f8fdf49fdcb8f4691d 234 PRINTS PR00126 ATP synthase gamma subunit signature 177 196 4.6E-10 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_09070 532a8e17f52591f8fdf49fdcb8f4691d 234 PRINTS PR00126 ATP synthase gamma subunit signature 208 229 4.6E-10 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_09070 532a8e17f52591f8fdf49fdcb8f4691d 234 Pfam PF00231 ATP synthase 1 228 8.5E-40 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_14650 6a9ab71bffb2f497084403056b3dd6f2 325 SUPERFAMILY SSF48452 207 316 8.49E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_14650 6a9ab71bffb2f497084403056b3dd6f2 325 Gene3D G3DSA:1.25.40.10 105 312 7.8E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_01255 83525506cd265a3cbf7f39d10f7769a4 175 SMART SM00260 29 165 1.7E-24 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_01255 83525506cd265a3cbf7f39d10f7769a4 175 Gene3D G3DSA:2.30.30.40 36 156 2.5E-23 T 12-10-2018 R615_01255 83525506cd265a3cbf7f39d10f7769a4 175 Pfam PF01584 CheW-like domain 35 167 9.5E-29 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_01255 83525506cd265a3cbf7f39d10f7769a4 175 SUPERFAMILY SSF50341 29 172 1.57E-32 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_01255 83525506cd265a3cbf7f39d10f7769a4 175 Gene3D G3DSA:2.40.50.180 52 118 2.5E-23 T 12-10-2018 R615_04385 91a728f2e39ade28d0e328f3643fb2dd 182 Pfam PF02525 Flavodoxin-like fold 4 171 3.3E-37 T 12-10-2018 IPR003680 Flavodoxin-like fold R615_04385 91a728f2e39ade28d0e328f3643fb2dd 182 Gene3D G3DSA:3.40.50.360 3 179 2.3E-48 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_04385 91a728f2e39ade28d0e328f3643fb2dd 182 SUPERFAMILY SSF52218 1 176 6.29E-48 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_15485 49aa191dd09a6f5c1238f557083abad5 507 SMART SM00382 29 204 1.7E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_15485 49aa191dd09a6f5c1238f557083abad5 507 Pfam PF00005 ABC transporter 272 427 8.6E-13 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_15485 49aa191dd09a6f5c1238f557083abad5 507 Pfam PF00005 ABC transporter 21 167 5.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_15485 49aa191dd09a6f5c1238f557083abad5 507 Gene3D G3DSA:3.40.50.300 253 489 2.3E-32 T 12-10-2018 R615_15485 49aa191dd09a6f5c1238f557083abad5 507 Gene3D G3DSA:3.40.50.300 2 232 8.4E-58 T 12-10-2018 R615_15485 49aa191dd09a6f5c1238f557083abad5 507 SUPERFAMILY SSF52540 5 223 3.03E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15485 49aa191dd09a6f5c1238f557083abad5 507 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_15485 49aa191dd09a6f5c1238f557083abad5 507 SUPERFAMILY SSF52540 270 485 1.55E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 Gene3D G3DSA:3.30.360.10 128 235 2.0E-100 T 12-10-2018 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 2 266 2.9E-95 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 SUPERFAMILY SSF51735 1 266 3.39E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 129 265 6.7E-44 T 12-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 126 1.2E-37 T 12-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 PIRSF PIRSF000161 1 267 5.6E-87 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 SUPERFAMILY SSF55347 128 237 8.72E-38 T 12-10-2018 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 266 34.967 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 Gene3D G3DSA:3.40.50.720 3 265 2.0E-100 T 12-10-2018 R615_03950 32435cbfb3e18b136f07c85c2ed6987f 267 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 151 168 - T 12-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Pfam PF01799 [2Fe-2S] binding domain 81 160 1.3E-26 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Gene3D G3DSA:3.30.465.10 201 366 3.3E-51 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 R615_15480 2d9594917faa00c856cd973a19b2c679 485 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 R615_15480 2d9594917faa00c856cd973a19b2c679 485 SUPERFAMILY SSF47741 89 172 1.57E-29 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily R615_15480 2d9594917faa00c856cd973a19b2c679 485 PIRSF PIRSF036557 1 485 8.2E-156 T 12-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria R615_15480 2d9594917faa00c856cd973a19b2c679 485 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 2 473 8.0E-158 T 12-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 70 8.2E-4 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Gene3D G3DSA:3.30.390.50 374 475 2.6E-25 T 12-10-2018 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 375 473 2.7E-27 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal R615_15480 2d9594917faa00c856cd973a19b2c679 485 SUPERFAMILY SSF56176 197 362 5.61E-46 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 201 362 1.0E-44 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 R615_15480 2d9594917faa00c856cd973a19b2c679 485 SUPERFAMILY SSF54292 2 86 8.56E-14 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Gene3D G3DSA:1.10.150.120 87 165 1.2E-29 T 12-10-2018 R615_15480 2d9594917faa00c856cd973a19b2c679 485 Gene3D G3DSA:3.10.20.30 1 86 5.3E-23 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_15480 2d9594917faa00c856cd973a19b2c679 485 SUPERFAMILY SSF55447 371 477 8.11E-29 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily R615_15480 2d9594917faa00c856cd973a19b2c679 485 SMART SM01092 373 474 3.6E-25 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal R615_12805 b26b18995740874313e6be30f82ca11d 213 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 22 209 2.4E-93 T 12-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_12805 b26b18995740874313e6be30f82ca11d 213 Gene3D G3DSA:1.10.10.10 141 210 1.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_12805 b26b18995740874313e6be30f82ca11d 213 SUPERFAMILY SSF88659 142 205 6.54E-18 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_12805 b26b18995740874313e6be30f82ca11d 213 Gene3D G3DSA:1.10.1740.10 18 140 8.7E-42 T 12-10-2018 R615_12805 b26b18995740874313e6be30f82ca11d 213 Pfam PF08281 Sigma-70, region 4 153 200 6.7E-17 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_12805 b26b18995740874313e6be30f82ca11d 213 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 40 205 8.1E-31 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_12805 b26b18995740874313e6be30f82ca11d 213 SUPERFAMILY SSF88946 23 126 2.55E-30 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_12805 b26b18995740874313e6be30f82ca11d 213 Pfam PF04542 Sigma-70 region 2 44 111 2.2E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 Gene3D G3DSA:3.40.50.720 1 193 7.7E-58 T 12-10-2018 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 SUPERFAMILY SSF52413 283 387 1.7E-27 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 PIRSF PIRSF000124 1 388 4.7E-135 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 SMART SM00984 300 387 1.7E-13 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 375 3.4E-7 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 SUPERFAMILY SSF51735 1 194 4.17E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04990 1145a664426ddb8be4f565dc24e7b447 388 Gene3D G3DSA:3.40.50.720 222 388 5.7E-67 T 12-10-2018 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 375 3.1E-100 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 SUPERFAMILY SSF48179 191 287 4.42E-31 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 169 9.5E-32 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 PIRSF PIRSF500134 338 388 1.4 T 12-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 PIRSF PIRSF500134 1 348 2.1E-122 T 12-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 1.2E-27 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_04990 1145a664426ddb8be4f565dc24e7b447 388 Gene3D G3DSA:1.20.5.100 194 221 8.2E-21 T 12-10-2018 R615_13885 ffa4c775125ab8325e17b7c152076fc6 300 Gene3D G3DSA:3.40.50.1980 43 161 2.5E-35 T 12-10-2018 R615_13885 ffa4c775125ab8325e17b7c152076fc6 300 Pfam PF01497 Periplasmic binding protein 46 270 2.1E-26 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain R615_13885 ffa4c775125ab8325e17b7c152076fc6 300 SUPERFAMILY SSF53807 29 290 1.02E-62 T 12-10-2018 R615_13885 ffa4c775125ab8325e17b7c152076fc6 300 Gene3D G3DSA:3.40.50.1980 164 292 3.1E-33 T 12-10-2018 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 3.2E-48 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 Pfam PF00210 Ferritin-like domain 8 144 2.7E-38 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 SUPERFAMILY SSF47240 1 155 2.5E-47 T 12-10-2018 IPR009078 Ferritin-like superfamily R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PIRSF PIRSF002560 1 156 2.7E-62 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 Gene3D G3DSA:1.20.1260.10 1 155 4.1E-60 T 12-10-2018 IPR012347 Ferritin-like R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 23 43 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 3 22 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 65 85 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 86 106 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 129 150 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 44 64 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12455 38de5e966ae746cb6b2f6e78132baeb3 156 PRINTS PR00601 Bacterioferritin signature 107 127 6.4E-46 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 413 4.8E-32 T 12-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 235 1.8E-15 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Gene3D G3DSA:3.10.50.40 150 246 8.3E-102 T 12-10-2018 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Gene3D G3DSA:3.30.70.1050 1 115 6.3E-33 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 PIRSF PIRSF003095 1 432 6.6E-121 T 12-10-2018 IPR005215 Trigger factor GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 1.1E-36 T 12-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 SUPERFAMILY SSF102735 1 129 2.88E-34 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 SUPERFAMILY SSF54534 88 242 9.43E-37 T 12-10-2018 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 TIGRFAM TIGR00115 tig: trigger factor 11 412 9.6E-136 T 12-10-2018 IPR005215 Trigger factor GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Gene3D G3DSA:1.10.3120.10 116 418 8.3E-102 T 12-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 SUPERFAMILY SSF109998 248 430 1.26E-42 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily R615_08345 3e8b59ffe07cac0f8640b55f06effef0 437 Hamap MF_00303 Trigger factor [tig]. 1 419 20.852 T 12-10-2018 IPR005215 Trigger factor GO:0015031 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 1345 1352 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Pfam PF00289 Biotin carboxylase, N-terminal domain 1057 1168 5.3E-30 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Pfam PF02785 Biotin carboxylase C-terminal domain 1393 1504 3.1E-24 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Gene3D G3DSA:2.40.50.100 1562 1631 1.4E-14 T 12-10-2018 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SUPERFAMILY SSF52096 748 1029 1.6E-27 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Pfam PF01039 Carboxyl transferase domain 119 214 3.4E-11 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SUPERFAMILY SSF52440 1047 1171 2.11E-33 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Gene3D G3DSA:3.90.226.10 81 304 3.8E-32 T 12-10-2018 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SUPERFAMILY SSF51230 1543 1630 1.93E-9 T 12-10-2018 IPR011053 Single hybrid motif R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 1174 1380 6.3E-61 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SMART SM00878 1393 1504 1.4E-31 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SUPERFAMILY SSF51246 1388 1507 3.82E-27 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SUPERFAMILY SSF52096 69 275 3.22E-34 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_10090 7767b5e4145137b3cea3448105a0a889 1640 SUPERFAMILY SSF56059 1141 1390 1.63E-56 T 12-10-2018 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Gene3D G3DSA:3.90.226.10 777 1029 1.0E-26 T 12-10-2018 R615_10090 7767b5e4145137b3cea3448105a0a889 1640 Gene3D G3DSA:3.30.470.130 1046 1510 9.8E-152 T 12-10-2018 R615_10030 751685f0038eae7847916e92e169da22 297 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 287 1.8E-32 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 R615_10030 751685f0038eae7847916e92e169da22 297 Gene3D G3DSA:3.40.50.720 2 169 9.9E-44 T 12-10-2018 R615_10030 751685f0038eae7847916e92e169da22 297 PIRSF PIRSF000103 2 297 9.1E-69 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 R615_10030 751685f0038eae7847916e92e169da22 297 SUPERFAMILY SSF51735 7 169 1.34E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_10030 751685f0038eae7847916e92e169da22 297 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 10 23 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 R615_10030 751685f0038eae7847916e92e169da22 297 Gene3D G3DSA:1.10.1040.10 170 296 2.1E-37 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 R615_10030 751685f0038eae7847916e92e169da22 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 167 2.7E-41 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 R615_10030 751685f0038eae7847916e92e169da22 297 SUPERFAMILY SSF48179 168 293 6.69E-37 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_01015 c70173e91c330e1661ee3794928f776d 265 SUPERFAMILY SSF48537 25 257 1.44E-55 T 12-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 R615_01015 c70173e91c330e1661ee3794928f776d 265 Pfam PF02265 S1/P1 Nuclease 25 258 5.5E-60 T 12-10-2018 IPR003154 S1/P1 nuclease GO:0003676|GO:0004519|GO:0006308 R615_01015 c70173e91c330e1661ee3794928f776d 265 Gene3D G3DSA:1.10.575.10 24 264 1.7E-65 T 12-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SUPERFAMILY SSF103190 37 211 3.84E-36 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 PRINTS PR00344 Bacterial sensor protein C-terminal signature 716 729 7.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 PRINTS PR00344 Bacterial sensor protein C-terminal signature 675 685 7.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 PRINTS PR00344 Bacterial sensor protein C-terminal signature 657 671 7.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 PRINTS PR00344 Bacterial sensor protein C-terminal signature 692 710 7.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Pfam PF00512 His Kinase A (phospho-acceptor) domain 505 569 1.6E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Gene3D G3DSA:3.30.565.10 568 734 3.7E-48 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Pfam PF01627 Hpt domain 918 977 2.0E-10 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SMART SM00448 755 874 2.4E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SMART SM00388 504 569 2.2E-23 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Pfam PF08448 PAS fold 358 464 5.5E-6 T 12-10-2018 IPR013656 PAS fold-4 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 617 731 1.1E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Gene3D G3DSA:3.30.450.20 81 211 8.1E-32 T 12-10-2018 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SUPERFAMILY SSF52172 754 878 4.13E-36 T 12-10-2018 IPR011006 CheY-like superfamily R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SUPERFAMILY SSF47384 490 570 1.41E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SUPERFAMILY SSF55874 558 732 2.23E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Gene3D G3DSA:1.10.287.130 470 567 1.2E-27 T 12-10-2018 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Gene3D G3DSA:1.20.120.160 894 1007 7.8E-16 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SMART SM00387 616 732 1.0E-38 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SUPERFAMILY SSF47226 857 988 2.62E-19 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Pfam PF00072 Response regulator receiver domain 757 874 3.9E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Gene3D G3DSA:3.30.450.20 341 466 6.0E-9 T 12-10-2018 R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 SUPERFAMILY SSF55785 352 448 1.78E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_05895 b15d83f3e3da4b0f2160f1b78f79d214 1008 Gene3D G3DSA:3.40.50.2300 737 877 5.3E-38 T 12-10-2018 R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 101 170 1.1E-23 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 PRINTS PR00956 Flagellar motor switch protein FliN signature 146 161 3.9E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 PRINTS PR00956 Flagellar motor switch protein FliN signature 133 146 3.9E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 PRINTS PR00956 Flagellar motor switch protein FliN signature 100 116 3.9E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 PRINTS PR00956 Flagellar motor switch protein FliN signature 117 133 3.9E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 Gene3D G3DSA:2.30.330.10 89 180 2.2E-33 T 12-10-2018 IPR036429 SpoA-like superfamily R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 98 172 3.6E-33 T 12-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 R615_05195 d647aa9e09b3ca6f8ba5aad712e3bdf3 180 SUPERFAMILY SSF101801 98 178 8.76E-25 T 12-10-2018 IPR036429 SpoA-like superfamily R615_02490 b1005193cf25d5f0f6cebf665212674c 325 SUPERFAMILY SSF52540 17 160 9.69E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02490 b1005193cf25d5f0f6cebf665212674c 325 Gene3D G3DSA:1.10.20.140 123 195 1.7E-96 T 12-10-2018 R615_02490 b1005193cf25d5f0f6cebf665212674c 325 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 16 305 2.1E-102 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 R615_02490 b1005193cf25d5f0f6cebf665212674c 325 SUPERFAMILY SSF52540 10 232 3.74E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02490 b1005193cf25d5f0f6cebf665212674c 325 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 16 313 28.047 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 R615_02490 b1005193cf25d5f0f6cebf665212674c 325 Pfam PF01715 IPP transferase 50 296 3.7E-80 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 R615_02490 b1005193cf25d5f0f6cebf665212674c 325 Gene3D G3DSA:3.40.50.300 20 301 1.7E-96 T 12-10-2018 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Gene3D G3DSA:3.60.20.10 15 547 0.0 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Pfam PF01493 GXGXG motif 1238 1425 1.6E-78 T 12-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Gene3D G3DSA:3.20.20.70 485 1172 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 SUPERFAMILY SSF56235 15 432 2.32E-146 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Pfam PF04898 Glutamate synthase central domain 460 738 1.4E-105 T 12-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Gene3D G3DSA:3.20.20.70 433 793 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 SUPERFAMILY SSF69336 1215 1468 2.22E-88 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Pfam PF01645 Conserved region in glutamate synthase 794 1157 9.5E-148 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Gene3D G3DSA:2.160.20.60 1195 1471 4.9E-101 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 Pfam PF00310 Glutamine amidotransferases class-II 15 428 5.5E-168 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain R615_15225 1d81e508f4b5ff3a441ffd059779c0ea 1483 SUPERFAMILY SSF51395 454 1189 1.47E-246 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Gene3D G3DSA:3.40.1110.10 345 547 1.2E-278 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 SUPERFAMILY SSF56784 333 744 1.98E-55 T 12-10-2018 IPR036412 HAD-like superfamily R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Pfam PF08282 haloacid dehalogenase-like hydrolase 625 686 3.1E-5 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Pfam PF00690 Cation transporter/ATPase, N-terminus 20 82 3.1E-15 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Gene3D G3DSA:1.20.1110.10 65 895 1.2E-278 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 SMART SM00831 14 87 2.2E-21 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 172 186 4.1E-38 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 572 4.1E-38 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 664 676 4.1E-38 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 540 551 4.1E-38 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 335 349 4.1E-38 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 640 659 4.1E-38 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 SUPERFAMILY SSF81653 125 234 1.96E-27 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 640 656 1.0E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 499 517 1.0E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 612 628 1.0E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 672 697 1.0E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Pfam PF00122 E1-E2 ATPase 122 315 5.4E-47 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 730 2.9E-34 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 225 354 6.2E-23 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Gene3D G3DSA:2.70.150.10 28 237 1.2E-278 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 337 343 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Pfam PF00689 Cation transporting ATPase, C-terminus 725 896 3.5E-34 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Pfam PF13246 Cation transport ATPase (P-type) 396 484 5.6E-23 T 12-10-2018 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 Gene3D G3DSA:3.40.50.1000 332 685 1.2E-278 T 12-10-2018 IPR023214 HAD superfamily R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 SUPERFAMILY SSF81665 23 902 2.88E-111 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 R615_10485 7e6fe4542dd99a70c6bc2530c4ac620f 909 SUPERFAMILY SSF81660 342 544 2.4E-54 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 R615_04525 56a49d936af318d7c073fa2551c09322 117 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 12-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_04525 56a49d936af318d7c073fa2551c09322 117 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 5 117 31.315 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 SUPERFAMILY SSF50104 5 116 5.82E-45 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_04525 56a49d936af318d7c073fa2551c09322 117 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 6 116 5.3E-50 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 PRINTS PR00061 Ribosomal protein L19 signature 7 36 2.2E-40 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 PRINTS PR00061 Ribosomal protein L19 signature 37 66 2.2E-40 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 PRINTS PR00061 Ribosomal protein L19 signature 91 116 2.2E-40 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 PIRSF PIRSF002191 1 117 3.3E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 Pfam PF01245 Ribosomal protein L19 7 116 3.1E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04525 56a49d936af318d7c073fa2551c09322 117 Gene3D G3DSA:2.30.30.790 5 117 3.3E-15 T 12-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_09165 e4ae12437de822f6b79a9864bbbbda58 413 Gene3D G3DSA:1.10.443.10 198 396 1.2E-17 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 R615_09165 e4ae12437de822f6b79a9864bbbbda58 413 SUPERFAMILY SSF56349 57 398 7.95E-23 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 SMART SM00924 35 138 6.7E-37 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Pfam PF03448 MgtE intracellular N domain 36 136 2.5E-26 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain R615_02095 900bc2e3a215d2f2567610dab80226c9 451 SUPERFAMILY SSF158791 12 135 6.15E-29 T 12-10-2018 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 SUPERFAMILY SSF161093 280 450 4.18E-46 T 12-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Gene3D G3DSA:1.25.60.10 5 133 6.6E-21 T 12-10-2018 IPR038076 MgtE, N-terminal domain superfamily R615_02095 900bc2e3a215d2f2567610dab80226c9 451 SUPERFAMILY SSF54631 138 277 4.04E-29 T 12-10-2018 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 TIGRFAM TIGR00400 mgtE: magnesium transporter 18 449 1.5E-90 T 12-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Pfam PF01769 Divalent cation transporter 322 443 3.2E-23 T 12-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Gene3D G3DSA:3.10.580.10 134 261 1.2E-39 T 12-10-2018 R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Gene3D G3DSA:1.10.357.20 277 450 1.6E-44 T 12-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain R615_02095 900bc2e3a215d2f2567610dab80226c9 451 SMART SM00116 145 198 69.0 T 12-10-2018 IPR000644 CBS domain R615_02095 900bc2e3a215d2f2567610dab80226c9 451 SMART SM00116 209 257 2.3E-4 T 12-10-2018 IPR000644 CBS domain R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Pfam PF00571 CBS domain 139 194 4.0E-5 T 12-10-2018 IPR000644 CBS domain R615_02095 900bc2e3a215d2f2567610dab80226c9 451 Pfam PF00571 CBS domain 202 256 9.4E-5 T 12-10-2018 IPR000644 CBS domain R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 SMART SM00437 282 567 2.9E-88 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Pfam PF01131 DNA topoisomerase 158 602 2.0E-114 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 530 544 2.9E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 2.9E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 325 334 2.9E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 406 422 2.9E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 2.9E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 319 334 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 SMART SM00436 128 223 2.0E-30 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Gene3D G3DSA:1.10.460.10 162 607 5.7E-160 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Gene3D G3DSA:3.40.50.140 1 156 3.1E-58 T 12-10-2018 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Pfam PF01751 Toprim domain 3 126 1.9E-14 T 12-10-2018 IPR006171 TOPRIM domain R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Gene3D G3DSA:1.10.290.10 291 420 5.7E-160 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 SMART SM00493 1 124 2.7E-22 T 12-10-2018 IPR006171 TOPRIM domain R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Gene3D G3DSA:2.70.20.10 217 497 5.7E-160 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 648 6.6E-234 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 SUPERFAMILY SSF56712 1 616 5.89E-178 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain R615_01365 7e07f77077691eb22d5cecab1dbc3eaa 668 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 655 57.179 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 312 3.3E-128 T 12-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 Gene3D G3DSA:3.40.50.620 323 475 4.1E-37 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_00165 487aa98d42c751c1620dc860c5214ed4 476 Gene3D G3DSA:3.40.1190.20 2 309 1.5E-113 T 12-10-2018 IPR029056 Ribokinase-like R615_00165 487aa98d42c751c1620dc860c5214ed4 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 50 74 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 SUPERFAMILY SSF53613 11 312 2.03E-61 T 12-10-2018 IPR029056 Ribokinase-like R615_00165 487aa98d42c751c1620dc860c5214ed4 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 343 408 4.1E-16 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 331 473 1.3E-62 T 12-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 SUPERFAMILY SSF52374 342 471 1.3E-22 T 12-10-2018 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 42.875 T 12-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 R615_00165 487aa98d42c751c1620dc860c5214ed4 476 Pfam PF00294 pfkB family carbohydrate kinase 11 302 1.6E-50 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB R615_00165 487aa98d42c751c1620dc860c5214ed4 476 Pfam PF01467 Cytidylyltransferase-like 345 435 9.1E-15 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_15775 675da252df3b2a4fae590a36bc7c928f 455 SUPERFAMILY SSF53448 1 250 6.08E-61 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_15775 675da252df3b2a4fae590a36bc7c928f 455 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 453 1.7E-191 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 R615_15775 675da252df3b2a4fae590a36bc7c928f 455 Gene3D G3DSA:3.90.550.10 1 226 4.4E-63 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_15775 675da252df3b2a4fae590a36bc7c928f 455 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 394 428 4.8E-8 T 12-10-2018 IPR001451 Hexapeptide repeat R615_15775 675da252df3b2a4fae590a36bc7c928f 455 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 451 42.372 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 R615_15775 675da252df3b2a4fae590a36bc7c928f 455 Pfam PF12804 MobA-like NTP transferase domain 6 126 4.6E-24 T 12-10-2018 IPR025877 MobA-like NTP transferase R615_15775 675da252df3b2a4fae590a36bc7c928f 455 SUPERFAMILY SSF51161 254 437 3.32E-51 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_15775 675da252df3b2a4fae590a36bc7c928f 455 Gene3D G3DSA:2.160.10.10 227 455 2.4E-68 T 12-10-2018 R615_15775 675da252df3b2a4fae590a36bc7c928f 455 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 402 430 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 R615_15775 675da252df3b2a4fae590a36bc7c928f 455 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 265 299 8.6E-6 T 12-10-2018 IPR001451 Hexapeptide repeat R615_00285 7303091f74807afad4e92da431c4868e 165 Gene3D G3DSA:1.10.10.10 102 164 8.8E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00285 7303091f74807afad4e92da431c4868e 165 SUPERFAMILY SSF88659 104 160 1.0E-13 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_00285 7303091f74807afad4e92da431c4868e 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 160 2.1E-24 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_00285 7303091f74807afad4e92da431c4868e 165 SUPERFAMILY SSF88946 5 92 5.49E-16 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_00285 7303091f74807afad4e92da431c4868e 165 Pfam PF04542 Sigma-70 region 2 16 77 3.7E-12 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_00285 7303091f74807afad4e92da431c4868e 165 Pfam PF08281 Sigma-70, region 4 109 158 7.6E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_00285 7303091f74807afad4e92da431c4868e 165 Gene3D G3DSA:1.10.1740.10 1 70 3.8E-17 T 12-10-2018 R615_05070 966f0adba3ccb9ef477c7c77cb8298cf 153 Gene3D G3DSA:1.20.120.340 1 129 7.2E-40 T 12-10-2018 R615_05070 966f0adba3ccb9ef477c7c77cb8298cf 153 PIRSF PIRSF039090 1 133 2.3E-45 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 R615_05070 966f0adba3ccb9ef477c7c77cb8298cf 153 SUPERFAMILY SSF101116 8 126 1.22E-37 T 12-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 R615_05070 966f0adba3ccb9ef477c7c77cb8298cf 153 Pfam PF02561 Flagellar protein FliS 8 124 1.4E-35 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 R615_05070 966f0adba3ccb9ef477c7c77cb8298cf 153 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 123 4.0E-26 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 R615_03485 742cb2fa9cd95c71c57a91a6d116e8e5 586 Gene3D G3DSA:3.30.70.270 395 583 2.7E-55 T 12-10-2018 R615_03485 742cb2fa9cd95c71c57a91a6d116e8e5 586 SUPERFAMILY SSF55073 414 581 7.22E-44 T 12-10-2018 IPR029787 Nucleotide cyclase R615_03485 742cb2fa9cd95c71c57a91a6d116e8e5 586 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 405 582 2.3E-48 T 12-10-2018 IPR000160 GGDEF domain R615_03485 742cb2fa9cd95c71c57a91a6d116e8e5 586 SMART SM00267 398 584 9.7E-58 T 12-10-2018 IPR000160 GGDEF domain R615_03485 742cb2fa9cd95c71c57a91a6d116e8e5 586 Pfam PF00990 Diguanylate cyclase, GGDEF domain 410 579 5.3E-43 T 12-10-2018 IPR000160 GGDEF domain R615_03335 3c7321916c6b0b56327aaedfd3004a41 159 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_03335 3c7321916c6b0b56327aaedfd3004a41 159 Pfam PF12019 Type II transport protein GspH 50 147 2.7E-7 T 12-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 R615_03335 3c7321916c6b0b56327aaedfd3004a41 159 Gene3D G3DSA:3.30.700.10 11 155 6.2E-13 T 12-10-2018 R615_03335 3c7321916c6b0b56327aaedfd3004a41 159 SUPERFAMILY SSF54523 11 94 1.18E-15 T 12-10-2018 R615_03335 3c7321916c6b0b56327aaedfd3004a41 159 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 5.0E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_03335 3c7321916c6b0b56327aaedfd3004a41 159 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 1.2E-4 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_12645 af836620f6c238036769118942b8658a 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.545 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 Pfam PF00334 Nucleoside diphosphate kinase 4 138 1.7E-55 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.1E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 1.1E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 1.1E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 1.1E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.1E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 SMART SM00562 3 140 1.4E-87 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 SUPERFAMILY SSF54919 1 140 3.54E-57 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_12645 af836620f6c238036769118942b8658a 141 Gene3D G3DSA:3.30.70.141 1 141 5.8E-58 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 R615_11315 0461c035476063277c62c883c1db1818 840 SMART SM00490 246 347 2.9E-15 T 12-10-2018 IPR001650 Helicase, C-terminal R615_11315 0461c035476063277c62c883c1db1818 840 SMART SM00847 406 493 0.0026 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 R615_11315 0461c035476063277c62c883c1db1818 840 Gene3D G3DSA:3.40.50.300 196 364 1.4E-52 T 12-10-2018 R615_11315 0461c035476063277c62c883c1db1818 840 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 20 837 7.9E-285 T 12-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 R615_11315 0461c035476063277c62c883c1db1818 840 Pfam PF04408 Helicase associated domain (HA2) 408 473 1.9E-7 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 R615_11315 0461c035476063277c62c883c1db1818 840 SUPERFAMILY SSF52540 38 358 6.57E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11315 0461c035476063277c62c883c1db1818 840 Gene3D G3DSA:3.40.50.300 16 195 1.4E-53 T 12-10-2018 R615_11315 0461c035476063277c62c883c1db1818 840 Gene3D G3DSA:1.20.120.1080 389 485 6.4E-9 T 12-10-2018 R615_11315 0461c035476063277c62c883c1db1818 840 Pfam PF00270 DEAD/DEAH box helicase 35 178 5.9E-9 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_11315 0461c035476063277c62c883c1db1818 840 Pfam PF00271 Helicase conserved C-terminal domain 224 345 6.6E-14 T 12-10-2018 IPR001650 Helicase, C-terminal R615_11315 0461c035476063277c62c883c1db1818 840 SMART SM00487 18 216 2.8E-18 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_11315 0461c035476063277c62c883c1db1818 840 Pfam PF08482 ATP-dependent helicase C-terminal 694 825 1.2E-54 T 12-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal R615_11315 0461c035476063277c62c883c1db1818 840 PIRSF PIRSF005496 16 839 7.0E-289 T 12-10-2018 R615_11325 4b30347fb13233446ff77875ea03e3bf 259 Gene3D G3DSA:3.30.420.10 132 256 2.3E-16 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_11325 4b30347fb13233446ff77875ea03e3bf 259 SUPERFAMILY SSF53098 132 255 1.67E-32 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_11325 4b30347fb13233446ff77875ea03e3bf 259 Pfam PF00665 Integrase core domain 135 248 5.1E-30 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 R615_11325 4b30347fb13233446ff77875ea03e3bf 259 Pfam PF13276 HTH-like domain 53 108 4.7E-18 T 12-10-2018 IPR025948 HTH-like domain R615_02465 23222b5d2667db557364b62ebcada17f 356 Pfam PF08331 Domain of unknown function (DUF1730) 69 147 3.6E-24 T 12-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 R615_02465 23222b5d2667db557364b62ebcada17f 356 Pfam PF13484 4Fe-4S double cluster binding domain 200 264 4.4E-18 T 12-10-2018 R615_02465 23222b5d2667db557364b62ebcada17f 356 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 201 212 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_02465 23222b5d2667db557364b62ebcada17f 356 SUPERFAMILY SSF54862 197 325 2.68E-15 T 12-10-2018 R615_02465 23222b5d2667db557364b62ebcada17f 356 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 21 355 8.9E-150 T 12-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 R615_02465 23222b5d2667db557364b62ebcada17f 356 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 14 323 49.606 T 12-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Gene3D G3DSA:1.10.1740.60 197 281 4.8E-40 T 12-10-2018 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Gene3D G3DSA:2.60.40.1730 16 196 1.7E-66 T 12-10-2018 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Gene3D G3DSA:1.10.390.10 283 445 1.9E-60 T 12-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 555 872 1.7E-113 T 12-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Gene3D G3DSA:1.25.50.10 553 873 3.7E-111 T 12-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Pfam PF01433 Peptidase family M1 domain 210 441 2.4E-57 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 SUPERFAMILY SSF55486 205 451 5.68E-73 T 12-10-2018 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Gene3D G3DSA:2.60.40.1840 446 551 4.7E-34 T 12-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 872 0.0 T 12-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 178 193 3.2E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 260 270 3.2E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 315 327 3.2E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 296 311 3.2E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 SUPERFAMILY SSF63737 5 195 9.81E-42 T 12-10-2018 R615_11760 4bafb5f706cd46a7c4dd7f264814a390 875 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 446 551 1.8E-30 T 12-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold R615_02345 c2b636e345e069f11dd14191d8147e34 943 Gene3D G3DSA:3.40.50.300 613 936 1.8E-141 T 12-10-2018 R615_02345 c2b636e345e069f11dd14191d8147e34 943 Gene3D G3DSA:1.20.1580.10 90 492 6.5E-246 T 12-10-2018 R615_02345 c2b636e345e069f11dd14191d8147e34 943 SUPERFAMILY SSF52540 613 909 1.43E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02345 c2b636e345e069f11dd14191d8147e34 943 Gene3D G3DSA:3.30.190.20 130 239 6.5E-246 T 12-10-2018 R615_02345 c2b636e345e069f11dd14191d8147e34 943 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_02345 c2b636e345e069f11dd14191d8147e34 943 Gene3D G3DSA:1.20.1580.10 693 830 1.8E-141 T 12-10-2018 R615_02345 c2b636e345e069f11dd14191d8147e34 943 Gene3D G3DSA:1.10.8.280 287 403 6.5E-246 T 12-10-2018 R615_02345 c2b636e345e069f11dd14191d8147e34 943 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.686 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 R615_02345 c2b636e345e069f11dd14191d8147e34 943 Gene3D G3DSA:3.40.50.300 6 595 6.5E-246 T 12-10-2018 R615_02345 c2b636e345e069f11dd14191d8147e34 943 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 924 0.0 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 R615_02345 c2b636e345e069f11dd14191d8147e34 943 Pfam PF00005 ABC transporter 623 860 1.3E-10 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_02345 c2b636e345e069f11dd14191d8147e34 943 SUPERFAMILY SSF52540 3 569 5.53E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02345 c2b636e345e069f11dd14191d8147e34 943 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SMART SM00322 558 623 8.4E-12 T 12-10-2018 IPR004087 K Homology domain GO:0003676 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Gene3D G3DSA:3.30.1370.10 556 627 1.2E-21 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF00013 KH domain 564 619 5.1E-12 T 12-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF50249 626 698 4.97E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 13 697 0.0 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF54211 310 498 3.09E-48 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 PIRSF PIRSF005499 5 700 3.3E-287 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF54791 563 645 7.21E-21 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF46915 232 331 1.83E-19 T 12-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Gene3D G3DSA:3.30.230.70 238 555 6.6E-114 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF55666 456 554 6.34E-29 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SMART SM00316 626 696 2.1E-23 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Gene3D G3DSA:3.30.230.70 3 231 1.8E-80 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 246 326 2.9E-19 T 12-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF01138 3' exoribonuclease family, domain 1 330 462 2.4E-20 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF01138 3' exoribonuclease family, domain 1 18 147 1.0E-20 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF03725 3' exoribonuclease family, domain 2 150 214 3.1E-13 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF03725 3' exoribonuclease family, domain 2 465 534 1.3E-6 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 6 699 30.119 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Pfam PF00575 S1 RNA binding domain 625 696 3.9E-14 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 Gene3D G3DSA:2.40.50.140 628 700 5.4E-27 T 12-10-2018 R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF54211 9 147 9.62E-51 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_04070 5b17eba90ecb4873ceba446bbebf3c03 700 SUPERFAMILY SSF55666 148 238 7.85E-28 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 Pfam PF17152 Periplasmic sensor domain 41 106 5.4E-12 T 12-10-2018 IPR033417 Periplasmic sensor domain CHASE8 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 SMART SM00304 203 256 1.0E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 Gene3D G3DSA:1.10.287.130 254 352 1.0E-27 T 12-10-2018 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 SUPERFAMILY SSF158472 203 252 1.31E-8 T 12-10-2018 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 Pfam PF00512 His Kinase A (phospho-acceptor) domain 289 354 4.1E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 Gene3D G3DSA:1.10.8.500 203 253 2.3E-5 T 12-10-2018 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 Pfam PF00672 HAMP domain 204 252 3.5E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 SMART SM00388 289 354 1.0E-22 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_01100 86a5580cefee6fc06547d4fe06338ae0 415 SUPERFAMILY SSF47384 275 355 5.3E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_12225 485737389ec9ad6dc9d7b7f0534603bf 181 SUPERFAMILY SSF46955 7 54 3.24E-7 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_12225 485737389ec9ad6dc9d7b7f0534603bf 181 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 7 48 7.7E-9 T 12-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 R615_12225 485737389ec9ad6dc9d7b7f0534603bf 181 Pfam PF12728 Helix-turn-helix domain 7 57 1.2E-9 T 12-10-2018 R615_12225 485737389ec9ad6dc9d7b7f0534603bf 181 Gene3D G3DSA:1.10.1660.10 4 55 8.9E-8 T 12-10-2018 R615_11910 c9cc288ed108fffeeb21e16c9efa20c4 210 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 9 202 2.6E-48 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 R615_11910 c9cc288ed108fffeeb21e16c9efa20c4 210 Pfam PF01914 MarC family integral membrane protein 8 204 2.3E-50 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 R615_03925 b3711a1afe5eb3f87bdc934f3f70f0e5 134 Gene3D G3DSA:3.30.1490.190 85 134 1.4E-16 T 12-10-2018 R615_03925 b3711a1afe5eb3f87bdc934f3f70f0e5 134 Pfam PF01475 Ferric uptake regulator family 10 130 8.1E-43 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 R615_03925 b3711a1afe5eb3f87bdc934f3f70f0e5 134 SUPERFAMILY SSF46785 8 132 7.44E-38 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_03925 b3711a1afe5eb3f87bdc934f3f70f0e5 134 Gene3D G3DSA:1.10.10.10 2 84 1.3E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 Gene3D G3DSA:3.30.930.10 1 217 1.7E-108 T 12-10-2018 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 Gene3D G3DSA:1.20.58.180 218 299 4.6E-36 T 12-10-2018 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 9 300 1.3E-158 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 294 60.417 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 2.2E-67 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 2.2E-67 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 254 270 2.2E-67 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 2.2E-67 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 2.2E-67 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 2.2E-67 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 SUPERFAMILY SSF55681 10 293 4.28E-134 T 12-10-2018 R615_00085 2e1afdf1b156da8842a7576d25e67ec3 330 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 292 1.7E-150 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 SUPERFAMILY SSF53697 248 607 1.86E-110 T 12-10-2018 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Gene3D G3DSA:3.40.50.10490 252 606 4.2E-146 T 12-10-2018 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 607 2.0E-257 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 SUPERFAMILY SSF56235 2 236 2.74E-75 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Pfam PF01380 SIS domain 288 416 1.5E-33 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Pfam PF01380 SIS domain 460 589 1.6E-24 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Gene3D G3DSA:3.60.20.10 2 244 4.9E-78 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Gene3D G3DSA:3.40.50.10490 445 592 4.2E-146 T 12-10-2018 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Pfam PF13522 Glutamine amidotransferase domain 56 191 1.2E-20 T 12-10-2018 R615_00345 b7825a06758e97cf181d886ec60a38b4 607 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 607 41.043 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 R615_04220 c499411ca292d5d3bd25229edc61990b 93 SUPERFAMILY SSF51182 1 92 1.56E-33 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_04220 c499411ca292d5d3bd25229edc61990b 93 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 4.5E-35 T 12-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 R615_04220 c499411ca292d5d3bd25229edc61990b 93 Gene3D G3DSA:2.60.120.10 1 92 5.8E-33 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_04220 c499411ca292d5d3bd25229edc61990b 93 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 93 24.327 T 12-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 R615_12180 648a5405014784f3b90b76a43a13fbff 287 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 8.4E-23 T 12-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain R615_12180 648a5405014784f3b90b76a43a13fbff 287 Pfam PF01545 Cation efflux family 15 206 1.0E-35 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_12180 648a5405014784f3b90b76a43a13fbff 287 SUPERFAMILY SSF160240 210 287 5.1E-20 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 R615_12180 648a5405014784f3b90b76a43a13fbff 287 Gene3D G3DSA:3.30.70.1350 207 287 9.1E-27 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 R615_12180 648a5405014784f3b90b76a43a13fbff 287 Gene3D G3DSA:1.20.1510.10 8 206 1.5E-50 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_12180 648a5405014784f3b90b76a43a13fbff 287 SUPERFAMILY SSF161111 9 207 1.96E-47 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_12180 648a5405014784f3b90b76a43a13fbff 287 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 284 4.2E-66 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_13495 37f840f5292eaa52200a8881c797d2aa 501 Gene3D G3DSA:3.40.50.1820 22 225 4.5E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_13495 37f840f5292eaa52200a8881c797d2aa 501 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 245 499 27.247 T 12-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 R615_13495 37f840f5292eaa52200a8881c797d2aa 501 Gene3D G3DSA:3.40.50.150 240 448 1.4E-34 T 12-10-2018 R615_13495 37f840f5292eaa52200a8881c797d2aa 501 SUPERFAMILY SSF53474 24 239 1.77E-11 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_13495 37f840f5292eaa52200a8881c797d2aa 501 Pfam PF08241 Methyltransferase domain 287 383 6.2E-22 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 R615_13495 37f840f5292eaa52200a8881c797d2aa 501 SUPERFAMILY SSF53335 250 431 1.67E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 SUPERFAMILY SSF53623 102 305 3.14E-55 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 Gene3D G3DSA:3.40.50.720 6 97 2.2E-15 T 12-10-2018 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 Pfam PF02875 Mur ligase family, glutamate ligase domain 309 383 2.2E-7 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 9 449 32.89 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 Gene3D G3DSA:3.40.1190.10 99 307 1.0E-68 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 Gene3D G3DSA:3.90.190.20 308 445 1.3E-40 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 SUPERFAMILY SSF53244 307 449 1.92E-41 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 Pfam PF08245 Mur ligase middle domain 115 287 1.9E-34 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 SUPERFAMILY SSF51984 12 95 4.84E-12 T 12-10-2018 R615_13410 9cfa7826cf108b37edcec8fb8c96225e 450 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 447 1.2E-122 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_16945 0827875600c0becfca202aed59cb4c02 605 SUPERFAMILY SSF54980 398 512 4.27E-26 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_16945 0827875600c0becfca202aed59cb4c02 605 Gene3D G3DSA:2.40.30.10 199 299 7.5E-31 T 12-10-2018 R615_16945 0827875600c0becfca202aed59cb4c02 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 6 599 9.2E-285 T 12-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 PRINTS PR00315 GTP-binding elongation factor signature 123 132 3.2E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 PRINTS PR00315 GTP-binding elongation factor signature 51 59 3.2E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 PRINTS PR00315 GTP-binding elongation factor signature 71 81 3.2E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 PRINTS PR00315 GTP-binding elongation factor signature 7 20 3.2E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 SUPERFAMILY SSF52540 4 219 6.59E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16945 0827875600c0becfca202aed59cb4c02 605 Pfam PF03144 Elongation factor Tu domain 2 219 289 3.3E-12 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 Pfam PF00009 Elongation factor Tu GTP binding domain 6 194 4.8E-56 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 134 1.1E-22 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_16945 0827875600c0becfca202aed59cb4c02 605 Gene3D G3DSA:2.40.50.250 483 599 6.9E-129 T 12-10-2018 R615_16945 0827875600c0becfca202aed59cb4c02 605 Gene3D G3DSA:3.30.70.240 389 482 6.9E-129 T 12-10-2018 R615_16945 0827875600c0becfca202aed59cb4c02 605 SUPERFAMILY SSF54980 302 387 1.87E-14 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_16945 0827875600c0becfca202aed59cb4c02 605 Gene3D G3DSA:3.40.50.300 3 198 4.8E-67 T 12-10-2018 R615_16945 0827875600c0becfca202aed59cb4c02 605 Pfam PF00679 Elongation factor G C-terminus 396 477 9.5E-21 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_16945 0827875600c0becfca202aed59cb4c02 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_16945 0827875600c0becfca202aed59cb4c02 605 SUPERFAMILY SSF50447 151 299 6.24E-34 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16945 0827875600c0becfca202aed59cb4c02 605 Gene3D G3DSA:3.30.70.870 306 590 6.9E-129 T 12-10-2018 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 Gene3D G3DSA:3.30.9.10 372 576 1.2E-116 T 12-10-2018 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 SUPERFAMILY SSF51905 286 663 4.92E-26 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 286 669 4.1E-105 T 12-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 Gene3D G3DSA:3.50.50.60 284 667 1.2E-116 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 Gene3D G3DSA:3.40.50.150 17 266 1.4E-95 T 12-10-2018 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 Pfam PF01266 FAD dependent oxidoreductase 286 641 1.7E-36 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 SUPERFAMILY SSF54373 487 555 6.02E-5 T 12-10-2018 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 15 665 23.129 T 12-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 R615_06125 dc836c96ba4d288b2e3c93a7552b3156 678 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 130 256 1.9E-36 T 12-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 R615_07055 5cd87796f5e82cc4f5205c035b7a4555 233 Gene3D G3DSA:3.10.50.40 89 233 7.0E-53 T 12-10-2018 R615_07055 5cd87796f5e82cc4f5205c035b7a4555 233 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 20 129 8.5E-32 T 12-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 R615_07055 5cd87796f5e82cc4f5205c035b7a4555 233 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 139 225 8.5E-28 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain R615_07055 5cd87796f5e82cc4f5205c035b7a4555 233 SUPERFAMILY SSF54534 32 227 5.5E-56 T 12-10-2018 R615_07055 5cd87796f5e82cc4f5205c035b7a4555 233 Gene3D G3DSA:1.10.287.460 26 88 2.8E-18 T 12-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 R615_04540 10c923ee56aed1342973598db44365cd 287 SUPERFAMILY SSF53474 11 268 3.22E-50 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_04540 10c923ee56aed1342973598db44365cd 287 Pfam PF12697 Alpha/beta hydrolase family 36 260 1.8E-21 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_04540 10c923ee56aed1342973598db44365cd 287 Gene3D G3DSA:3.40.50.1820 2 271 8.1E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Gene3D G3DSA:3.40.50.800 542 647 3.5E-29 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Pfam PF03129 Anticodon binding domain 551 638 1.3E-21 T 12-10-2018 IPR004154 Anticodon-binding R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 SUPERFAMILY SSF81271 12 70 2.98E-14 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 SUPERFAMILY SSF52954 539 644 7.1E-32 T 12-10-2018 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 SUPERFAMILY SSF55186 73 251 6.93E-62 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 75 644 34.171 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Gene3D G3DSA:3.30.54.20 139 197 6.1E-59 T 12-10-2018 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Gene3D G3DSA:3.10.20.30 11 71 2.3E-21 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 SMART SM00863 180 229 7.1E-19 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 331 539 2.4E-46 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 PRINTS PR01047 Threonyl-tRNA synthetase signature 517 530 2.4E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 PRINTS PR01047 Threonyl-tRNA synthetase signature 474 502 2.4E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 PRINTS PR01047 Threonyl-tRNA synthetase signature 372 395 2.4E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 PRINTS PR01047 Threonyl-tRNA synthetase signature 339 367 2.4E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 PRINTS PR01047 Threonyl-tRNA synthetase signature 544 556 2.4E-52 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 81 639 1.7E-223 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 182 229 5.1E-11 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Pfam PF02824 TGS domain 13 70 6.9E-9 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Gene3D G3DSA:3.30.980.10 78 232 6.1E-59 T 12-10-2018 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 Gene3D G3DSA:3.30.930.10 233 541 6.6E-129 T 12-10-2018 R615_06710 5a9cd663f9f34d5266f261d79b768c7f 652 SUPERFAMILY SSF55681 253 536 1.46E-99 T 12-10-2018 R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 Gene3D G3DSA:1.20.1250.20 9 195 5.3E-40 T 12-10-2018 R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 SUPERFAMILY SSF103473 14 472 3.01E-58 T 12-10-2018 IPR036259 MFS transporter superfamily R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 ProSitePatterns PS00216 Sugar transport proteins signature 1. 349 366 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 Gene3D G3DSA:1.20.1250.20 287 477 2.6E-39 T 12-10-2018 R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 Pfam PF07690 Major Facilitator Superfamily 300 476 5.0E-14 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 Pfam PF07690 Major Facilitator Superfamily 22 237 5.6E-23 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_10240 b6e2a0a5552b7bd3da0306ab25233b83 490 TIGRFAM TIGR00886 2A0108: nitrite transporter 16 433 1.3E-100 T 12-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 Gene3D G3DSA:1.10.1440.20 569 625 3.8E-8 T 12-10-2018 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 Gene3D G3DSA:3.30.499.20 9 362 1.2E-129 T 12-10-2018 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 Gene3D G3DSA:3.20.19.10 626 866 2.5E-82 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 Pfam PF00330 Aconitase family (aconitate hydratase) 73 541 5.0E-144 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 5 865 0.0 T 12-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 SUPERFAMILY SSF52016 605 864 8.44E-66 T 12-10-2018 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 Pfam PF00694 Aconitase C-terminal domain 663 794 4.2E-29 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 Gene3D G3DSA:3.30.499.10 364 568 2.6E-73 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 SUPERFAMILY SSF53732 18 596 5.62E-181 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 165 173 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 270 283 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 141 154 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 208 223 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 284 297 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 363 377 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 410 421 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 472 485 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09360 5db861a08f284e2b3140b4c99df4c0f8 868 PRINTS PR00415 Aconitase family signature 194 207 5.2E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_13650 184c27b9714fdd53b1bf9b4f63b62c24 244 Gene3D G3DSA:1.20.1050.10 132 234 6.9E-6 T 12-10-2018 R615_13650 184c27b9714fdd53b1bf9b4f63b62c24 244 SUPERFAMILY SSF52833 1 100 3.7E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_13650 184c27b9714fdd53b1bf9b4f63b62c24 244 Gene3D G3DSA:3.40.30.10 1 102 8.7E-20 T 12-10-2018 R615_13650 184c27b9714fdd53b1bf9b4f63b62c24 244 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 78 3.6E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_13650 184c27b9714fdd53b1bf9b4f63b62c24 244 SUPERFAMILY SSF47616 70 228 2.56E-10 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_13650 184c27b9714fdd53b1bf9b4f63b62c24 244 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 205 2.6E-5 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal R615_09220 06219b219ee6366428a9b89bea9958d0 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 132 2.1E-30 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_09220 06219b219ee6366428a9b89bea9958d0 135 Gene3D G3DSA:3.30.420.270 61 129 1.1E-8 T 12-10-2018 R615_03125 a011fe4d3b4894a34c90757f09311d58 155 Gene3D G3DSA:3.40.1280.10 1 155 3.4E-53 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_03125 a011fe4d3b4894a34c90757f09311d58 155 SUPERFAMILY SSF75217 1 154 8.72E-52 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_03125 a011fe4d3b4894a34c90757f09311d58 155 PIRSF PIRSF004505 1 155 2.5E-46 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 R615_03125 a011fe4d3b4894a34c90757f09311d58 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 2.3E-52 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 R615_03125 a011fe4d3b4894a34c90757f09311d58 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 9.7E-59 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 R615_03125 a011fe4d3b4894a34c90757f09311d58 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 28.868 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 SMART SM00304 219 271 0.005 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 Gene3D G3DSA:1.10.287.950 223 549 8.5E-75 T 12-10-2018 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 514 1.0E-46 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 SUPERFAMILY SSF58104 239 548 4.32E-75 T 12-10-2018 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 SMART SM00283 286 547 3.1E-76 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 307 336 4.2E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 413 442 4.2E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_09745 1f74e1561bbe3fa9e9842fd2fd2eaae9 550 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 411 4.2E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_09645 98efaff2cf1217593710ebf0b0e4b2a7 152 Pfam PF14300 Domain of unknown function (DUF4375) 34 151 2.1E-30 T 12-10-2018 IPR025402 Domain of unknown function DUF4375 R615_09645 98efaff2cf1217593710ebf0b0e4b2a7 152 Gene3D G3DSA:1.20.1420.60 1 152 1.2E-13 T 12-10-2018 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 Gene3D G3DSA:3.40.50.720 235 447 5.2E-77 T 12-10-2018 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 SUPERFAMILY SSF51735 2 195 1.23E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 186 4.7E-63 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 PIRSF PIRSF000124 1 443 4.8E-144 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 SMART SM00984 320 428 4.9E-51 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 PIRSF PIRSF500134 1 445 2.1E-185 T 12-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 SUPERFAMILY SSF48179 204 301 2.31E-31 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 SUPERFAMILY SSF52413 306 438 6.15E-38 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 428 2.1E-31 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 424 1.4E-136 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 296 3.4E-35 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 Gene3D G3DSA:3.40.50.720 1 202 1.0E-76 T 12-10-2018 R615_08800 52a50c5fc9e07beeb2fec8436282ceba 448 Gene3D G3DSA:1.20.5.100 203 234 3.8E-17 T 12-10-2018 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 Gene3D G3DSA:3.40.190.290 91 287 1.5E-68 T 12-10-2018 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 SUPERFAMILY SSF53850 90 288 3.98E-49 T 12-10-2018 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 Gene3D G3DSA:1.10.10.10 3 88 1.8E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_02540 194a4addbf6b376137fd749da9bd6b19 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 63 1.9E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02540 194a4addbf6b376137fd749da9bd6b19 288 Pfam PF03466 LysR substrate binding domain 90 288 4.2E-48 T 12-10-2018 IPR005119 LysR, substrate-binding R615_02540 194a4addbf6b376137fd749da9bd6b19 288 SUPERFAMILY SSF46785 3 112 1.02E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_01115 159fab9b72d082c75583c8bb613a5573 379 SUPERFAMILY SSF103088 274 377 9.16E-36 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_01115 159fab9b72d082c75583c8bb613a5573 379 SUPERFAMILY SSF103647 237 266 3.4E-5 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_01115 159fab9b72d082c75583c8bb613a5573 379 Pfam PF00691 OmpA family 277 371 3.5E-22 T 12-10-2018 IPR006665 OmpA-like domain R615_01115 159fab9b72d082c75583c8bb613a5573 379 PRINTS PR01021 OMPA domain signature 307 322 2.4E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_01115 159fab9b72d082c75583c8bb613a5573 379 PRINTS PR01021 OMPA domain signature 322 338 2.4E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_01115 159fab9b72d082c75583c8bb613a5573 379 PRINTS PR01021 OMPA domain signature 277 299 2.4E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_01115 159fab9b72d082c75583c8bb613a5573 379 SUPERFAMILY SSF56925 43 196 2.88E-17 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_01115 159fab9b72d082c75583c8bb613a5573 379 Gene3D G3DSA:2.40.160.20 40 194 4.0E-17 T 12-10-2018 R615_01115 159fab9b72d082c75583c8bb613a5573 379 Gene3D G3DSA:3.30.1330.60 269 379 1.4E-41 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_01115 159fab9b72d082c75583c8bb613a5573 379 Pfam PF13505 Outer membrane protein beta-barrel domain 30 194 8.6E-13 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel R615_06700 a332c49d2a33c6c62b8be15a0bdf5ad7 449 SUPERFAMILY SSF56300 129 438 3.45E-24 T 12-10-2018 R615_06700 a332c49d2a33c6c62b8be15a0bdf5ad7 449 SUPERFAMILY SSF49363 48 121 4.58E-6 T 12-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 R615_06700 a332c49d2a33c6c62b8be15a0bdf5ad7 449 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 51 111 2.6E-7 T 12-10-2018 IPR032093 Phospholipase D, N-terminal R615_06700 a332c49d2a33c6c62b8be15a0bdf5ad7 449 Gene3D G3DSA:3.60.21.70 127 445 3.2E-38 T 12-10-2018 IPR038607 PhoD-like superfamily R615_06700 a332c49d2a33c6c62b8be15a0bdf5ad7 449 Pfam PF09423 PhoD-like phosphatase 194 407 4.1E-24 T 12-10-2018 IPR018946 Alkaline phosphatase D-related R615_01595 fdef7417676a805ecd54fad9a3b0051b 88 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 73 3.0E-23 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 R615_01595 fdef7417676a805ecd54fad9a3b0051b 88 SUPERFAMILY SSF111148 1 88 1.18E-36 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 R615_01595 fdef7417676a805ecd54fad9a3b0051b 88 PIRSF PIRSF029827 1 88 1.9E-36 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 R615_01595 fdef7417676a805ecd54fad9a3b0051b 88 Gene3D G3DSA:1.10.3880.10 1 88 7.9E-36 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 R615_01595 fdef7417676a805ecd54fad9a3b0051b 88 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 25.357 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 R615_01595 fdef7417676a805ecd54fad9a3b0051b 88 Pfam PF04362 Bacterial Fe(2+) trafficking 1 87 3.8E-39 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 R615_17325 9d732259cf82acc66168d916a6d5de45 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.574 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 R615_17325 9d732259cf82acc66168d916a6d5de45 156 SUPERFAMILY SSF81573 64 121 2.35E-13 T 12-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily R615_17325 9d732259cf82acc66168d916a6d5de45 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 2.9E-48 T 12-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 R615_17325 9d732259cf82acc66168d916a6d5de45 156 Gene3D G3DSA:1.20.5.620 62 122 2.7E-19 T 12-10-2018 R615_17325 9d732259cf82acc66168d916a6d5de45 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 4.7E-33 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 R615_04595 1f21850bb01e9e0df0c1ce419610bb23 150 Pfam PF01906 Putative heavy-metal-binding 56 144 1.7E-24 T 12-10-2018 IPR002765 Uncharacterised protein family UPF0145 R615_04595 1f21850bb01e9e0df0c1ce419610bb23 150 Gene3D G3DSA:3.30.110.70 50 147 9.4E-25 T 12-10-2018 R615_04595 1f21850bb01e9e0df0c1ce419610bb23 150 SUPERFAMILY SSF117782 56 145 1.06E-24 T 12-10-2018 IPR035439 UPF0145 domain superfamily R615_16780 9d705ed8731f7f90b575452372e190cc 404 SUPERFAMILY SSF55729 233 376 5.82E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_16780 9d705ed8731f7f90b575452372e190cc 404 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 404 182.06 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 R615_16780 9d705ed8731f7f90b575452372e190cc 404 PIRSF PIRSF000423 1 404 1.1E-166 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 R615_16780 9d705ed8731f7f90b575452372e190cc 404 Pfam PF00696 Amino acid kinase family 11 232 7.6E-22 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 R615_16780 9d705ed8731f7f90b575452372e190cc 404 Gene3D G3DSA:3.40.1160.10 1 257 1.8E-77 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_16780 9d705ed8731f7f90b575452372e190cc 404 Pfam PF00583 Acetyltransferase (GNAT) family 293 364 5.6E-8 T 12-10-2018 IPR000182 GNAT domain R615_16780 9d705ed8731f7f90b575452372e190cc 404 SUPERFAMILY SSF53633 2 256 6.02E-58 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_16780 9d705ed8731f7f90b575452372e190cc 404 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 1 404 1.3E-159 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 R615_16780 9d705ed8731f7f90b575452372e190cc 404 Gene3D G3DSA:3.40.630.30 258 404 4.7E-39 T 12-10-2018 R615_00475 6ec2bc72de5b704bb18ea1280d4f5ffa 600 SUPERFAMILY SSF81901 33 245 6.28E-5 T 12-10-2018 R615_02330 f4ff1fbc2357835436019d5bba81bfd8 221 Gene3D G3DSA:2.40.50.140 1 123 1.5E-47 T 12-10-2018 R615_02330 f4ff1fbc2357835436019d5bba81bfd8 221 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 221 9.5E-48 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 R615_02330 f4ff1fbc2357835436019d5bba81bfd8 221 Pfam PF00436 Single-strand binding protein family 5 108 1.1E-37 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 R615_02330 f4ff1fbc2357835436019d5bba81bfd8 221 Hamap MF_00984 Single-stranded DNA-binding protein. 5 112 34.643 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 R615_02330 f4ff1fbc2357835436019d5bba81bfd8 221 SUPERFAMILY SSF50249 3 170 3.29E-51 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 424 516 2.9E-12 T 12-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 104 116 1.1E-26 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 59 71 1.1E-26 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 343 349 1.1E-26 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 372 384 1.1E-26 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 43 53 1.1E-26 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 30 42 1.1E-26 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 SUPERFAMILY SSF51905 28 313 3.78E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 Gene3D G3DSA:3.30.9.10 112 350 1.7E-120 T 12-10-2018 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 Gene3D G3DSA:3.50.50.60 28 384 1.7E-120 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 Pfam PF01266 FAD dependent oxidoreductase 31 353 1.4E-51 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 R615_10050 bc2419cd9a3d185846a2fcf684f9769a 551 Gene3D G3DSA:1.10.8.870 421 544 2.1E-19 T 12-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 R615_03395 2e15f606b217bdbbae16475186b15f33 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 6.6E-26 T 12-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 R615_03395 2e15f606b217bdbbae16475186b15f33 163 Gene3D G3DSA:3.30.70.260 1 78 3.3E-34 T 12-10-2018 R615_03395 2e15f606b217bdbbae16475186b15f33 163 Pfam PF13710 ACT domain 12 72 5.8E-17 T 12-10-2018 R615_03395 2e15f606b217bdbbae16475186b15f33 163 SUPERFAMILY SSF55021 79 162 1.68E-25 T 12-10-2018 R615_03395 2e15f606b217bdbbae16475186b15f33 163 Gene3D G3DSA:3.30.70.1150 83 163 2.8E-28 T 12-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal R615_03395 2e15f606b217bdbbae16475186b15f33 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 1.0E-31 T 12-10-2018 R615_03395 2e15f606b217bdbbae16475186b15f33 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 2.3E-62 T 12-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 R615_03395 2e15f606b217bdbbae16475186b15f33 163 SUPERFAMILY SSF55021 1 75 8.09E-22 T 12-10-2018 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 1.2E-42 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 SUPERFAMILY SSF50249 3 123 3.77E-51 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 9.5E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 9.5E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 9.5E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 9.5E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 9.5E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 9.5E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.79 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 PIRSF PIRSF002133 1 124 4.8E-53 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 Gene3D G3DSA:2.40.50.140 1 124 3.7E-62 T 12-10-2018 R615_16205 c32a70a209963ab4757d8ab52619aef5 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 5.3E-70 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16900 e496f9d017775efd7ecdbd27c3a0e706 184 SUPERFAMILY SSF101327 7 172 1.57E-27 T 12-10-2018 IPR036255 YgfB-like superfamily R615_16900 e496f9d017775efd7ecdbd27c3a0e706 184 Gene3D G3DSA:1.20.120.740 1 184 1.0E-42 T 12-10-2018 R615_16900 e496f9d017775efd7ecdbd27c3a0e706 184 Pfam PF03695 Uncharacterised protein family (UPF0149) 10 172 5.0E-27 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 R615_08510 1359397f71c09e9ebef1c525e358a4df 289 Pfam PF00561 alpha/beta hydrolase fold 25 126 1.7E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08510 1359397f71c09e9ebef1c525e358a4df 289 Gene3D G3DSA:3.40.50.1820 9 273 5.7E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08510 1359397f71c09e9ebef1c525e358a4df 289 SUPERFAMILY SSF53474 13 267 5.4E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08510 1359397f71c09e9ebef1c525e358a4df 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 6.0E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08510 1359397f71c09e9ebef1c525e358a4df 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 6.0E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08510 1359397f71c09e9ebef1c525e358a4df 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 6.0E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 SMART SM01210 330 423 2.7E-49 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 2.9E-27 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 SUPERFAMILY SSF52440 1 103 1.35E-35 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 5.2E-81 T 12-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 2.7E-34 T 12-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Gene3D G3DSA:3.30.470.20 191 329 4.1E-59 T 12-10-2018 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Gene3D G3DSA:3.40.50.20 2 95 2.5E-36 T 12-10-2018 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 5.4E-173 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 SUPERFAMILY SSF51246 329 423 4.08E-29 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Gene3D G3DSA:3.30.1490.20 121 190 1.8E-28 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 SUPERFAMILY SSF56059 104 326 3.01E-65 T 12-10-2018 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Gene3D G3DSA:3.90.600.10 330 424 1.0E-30 T 12-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 12-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 SMART SM01209 103 296 1.0E-135 T 12-10-2018 R615_03415 b5a6d6c99b032a3b7cda8b6df6e06350 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 42.318 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 Pfam PF00742 Homoserine dehydrogenase 135 313 9.1E-64 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 SUPERFAMILY SSF55021 349 417 1.7E-12 T 12-10-2018 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 SUPERFAMILY SSF55347 135 300 5.75E-53 T 12-10-2018 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 Gene3D G3DSA:3.30.70.260 345 418 5.4E-159 T 12-10-2018 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 181 203 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 127 2.9E-20 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 Gene3D G3DSA:3.30.360.10 134 344 5.4E-159 T 12-10-2018 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 PIRSF PIRSF000098 1 431 7.0E-162 T 12-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 Gene3D G3DSA:3.40.50.720 4 336 5.4E-159 T 12-10-2018 R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 SUPERFAMILY SSF51735 2 156 1.78E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_05665 4c1b16a05f0b48cffac52c1f3016f634 432 Pfam PF01842 ACT domain 350 417 1.9E-12 T 12-10-2018 IPR002912 ACT domain R615_13200 69150aadd334c722745cad7663da4759 134 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 23 134 9.5E-27 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 R615_13200 69150aadd334c722745cad7663da4759 134 Gene3D G3DSA:3.40.1350.10 29 134 1.2E-31 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 R615_13200 69150aadd334c722745cad7663da4759 134 Pfam PF02021 Uncharacterised protein family UPF0102 30 118 3.6E-25 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 R615_13200 69150aadd334c722745cad7663da4759 134 SUPERFAMILY SSF52980 23 124 1.47E-19 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 R615_13200 69150aadd334c722745cad7663da4759 134 Hamap MF_00048 UPF0102 protein YraN [yraN]. 22 133 21.912 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 Gene3D G3DSA:2.50.20.10 817 1063 1.7E-66 T 12-10-2018 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 Pfam PF03176 MMPL family 145 379 3.5E-19 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 Pfam PF03176 MMPL family 584 782 9.7E-12 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 Gene3D G3DSA:1.20.1640.10 211 388 1.2E-17 T 12-10-2018 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 SUPERFAMILY SSF82866 593 784 1.83E-27 T 12-10-2018 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 SUPERFAMILY SSF82866 179 383 5.1E-31 T 12-10-2018 R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 Pfam PF17131 Outer membrane lipoprotein-sorting protein 872 1063 5.5E-54 T 12-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein R615_14985 51138a604c8b79f2a491e73af39e1bd0 1064 Gene3D G3DSA:1.20.1640.10 609 811 7.6E-13 T 12-10-2018 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 SMART SM00388 227 291 3.1E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 447 2.3E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_15735 c5215f33a27e657ccf4610cd5362702d 455 SMART SM00387 335 450 3.4E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_15735 c5215f33a27e657ccf4610cd5362702d 455 Gene3D G3DSA:1.10.287.130 175 293 7.3E-29 T 12-10-2018 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 290 4.8E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 SUPERFAMILY SSF55874 280 449 1.28E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_15735 c5215f33a27e657ccf4610cd5362702d 455 SUPERFAMILY SSF158472 172 225 2.88E-9 T 12-10-2018 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 Gene3D G3DSA:3.30.565.10 297 448 8.3E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_15735 c5215f33a27e657ccf4610cd5362702d 455 SUPERFAMILY SSF47384 210 291 1.73E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 Pfam PF00672 HAMP domain 172 223 7.8E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 9.0E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 9.0E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_15735 c5215f33a27e657ccf4610cd5362702d 455 SMART SM00304 171 226 1.4E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 Gene3D G3DSA:3.40.50.720 14 309 2.8E-89 T 12-10-2018 R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 20 309 3.2E-19 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 286 1.6E-41 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 SUPERFAMILY SSF51735 98 287 1.57E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 SUPERFAMILY SSF52283 1 118 6.59E-26 T 12-10-2018 R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 Gene3D G3DSA:3.40.50.720 94 285 2.8E-89 T 12-10-2018 R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 218 234 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site R615_10915 1254c9b7ac0e9c37ec8ca8a0dc4617ee 312 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 189 211 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site R615_02200 38cf46e8cad61c0109a983e4c56aa8f1 253 Gene3D G3DSA:3.40.1390.30 99 224 4.3E-79 T 12-10-2018 R615_02200 38cf46e8cad61c0109a983e4c56aa8f1 253 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 6 252 6.5E-63 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 R615_02200 38cf46e8cad61c0109a983e4c56aa8f1 253 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 7 240 9.6E-54 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 R615_02200 38cf46e8cad61c0109a983e4c56aa8f1 253 Gene3D G3DSA:3.40.1390.30 16 238 4.3E-79 T 12-10-2018 R615_02200 38cf46e8cad61c0109a983e4c56aa8f1 253 SUPERFAMILY SSF102705 4 252 1.83E-76 T 12-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily R615_11195 b29760509b13e8ca359f90f042c3988e 376 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 12 370 42.143 T 12-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 R615_11195 b29760509b13e8ca359f90f042c3988e 376 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 19 370 2.1E-161 T 12-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 R615_11195 b29760509b13e8ca359f90f042c3988e 376 SUPERFAMILY SSF53335 19 369 1.79E-49 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_11195 b29760509b13e8ca359f90f042c3988e 376 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 303 332 - T 12-10-2018 IPR030390 RNA methyltransferase TrmA, active site R615_11195 b29760509b13e8ca359f90f042c3988e 376 Gene3D G3DSA:3.40.1350.30 53 193 1.4E-127 T 12-10-2018 R615_11195 b29760509b13e8ca359f90f042c3988e 376 Gene3D G3DSA:3.40.50.150 21 366 1.4E-127 T 12-10-2018 R615_11195 b29760509b13e8ca359f90f042c3988e 376 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 352 362 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site R615_11195 b29760509b13e8ca359f90f042c3988e 376 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 19 370 8.1E-158 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 R615_07835 34253532c1b0d2d2c8587e266d0fe6a7 489 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 27 172 9.5E-40 T 12-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain R615_07835 34253532c1b0d2d2c8587e266d0fe6a7 489 Pfam PF08443 RimK-like ATP-grasp domain 281 459 7.4E-15 T 12-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 R615_07835 34253532c1b0d2d2c8587e266d0fe6a7 489 Gene3D G3DSA:3.40.50.20 206 296 3.6E-5 T 12-10-2018 R615_07835 34253532c1b0d2d2c8587e266d0fe6a7 489 SUPERFAMILY SSF56059 273 479 1.7E-37 T 12-10-2018 R615_07835 34253532c1b0d2d2c8587e266d0fe6a7 489 Gene3D G3DSA:3.30.470.20 366 482 3.4E-21 T 12-10-2018 R615_07835 34253532c1b0d2d2c8587e266d0fe6a7 489 Gene3D G3DSA:3.30.1490.20 298 364 4.8E-9 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 Pfam PF13672 Protein phosphatase 2C 21 206 2.9E-10 T 12-10-2018 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 SUPERFAMILY SSF81606 5 243 2.22E-46 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 391 403 - T 12-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 Gene3D G3DSA:1.10.510.10 264 545 1.6E-49 T 12-10-2018 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 SUPERFAMILY SSF56112 253 535 2.02E-55 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_00190 412104be4fc248a68d54082f7fdd56f5 575 SMART SM00220 272 537 7.0E-15 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 SMART SM00331 24 239 2.9E-8 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 Gene3D G3DSA:3.60.40.10 1 241 9.3E-39 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 Pfam PF00069 Protein kinase domain 282 522 1.1E-35 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 R615_00190 412104be4fc248a68d54082f7fdd56f5 575 SMART SM00332 2 237 1.6E-16 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 PRINTS PR01374 Gram-negative bacterial tonB protein signature 129 150 6.9E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 PRINTS PR01374 Gram-negative bacterial tonB protein signature 169 186 6.9E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 PRINTS PR01374 Gram-negative bacterial tonB protein signature 150 168 6.9E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 PRINTS PR01374 Gram-negative bacterial tonB protein signature 60 70 6.9E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 SUPERFAMILY SSF74653 126 209 1.09E-26 T 12-10-2018 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 Gene3D G3DSA:3.30.1150.10 115 212 5.4E-26 T 12-10-2018 R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 135 212 4.6E-22 T 12-10-2018 IPR006260 TonB/TolA, C-terminal R615_15535 1d2b3f0ab403c15cb1e698fad61e06da 213 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 134 211 8.3E-24 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 388 4.6E-158 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 SUPERFAMILY SSF69055 295 389 7.59E-32 T 12-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 145 233 1.1E-36 T 12-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 386 47.023 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 Pfam PF13288 DXP reductoisomerase C-terminal domain 265 381 1.1E-41 T 12-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 Gene3D G3DSA:3.40.50.720 1 149 7.1E-53 T 12-10-2018 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 SUPERFAMILY SSF51735 3 149 1.43E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 Gene3D G3DSA:1.10.1740.10 306 392 5.1E-29 T 12-10-2018 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 PIRSF PIRSF006205 2 392 2.3E-153 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 SUPERFAMILY SSF55347 125 268 1.05E-60 T 12-10-2018 R615_05490 4c497fdb9660e464fdd49f367e71ce29 392 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 131 6.6E-46 T 12-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 R615_15830 7afd721bb4277f59f3972b1e0178e92b 280 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_15830 7afd721bb4277f59f3972b1e0178e92b 280 Pfam PF00005 ABC transporter 35 163 1.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_15830 7afd721bb4277f59f3972b1e0178e92b 280 SUPERFAMILY SSF52540 15 230 3.4E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15830 7afd721bb4277f59f3972b1e0178e92b 280 Gene3D G3DSA:3.40.50.300 11 250 8.9E-58 T 12-10-2018 R615_15830 7afd721bb4277f59f3972b1e0178e92b 280 SMART SM00382 44 212 1.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 Hamap MF_00300 Chorismate synthase [aroC]. 10 353 37.457 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 TIGRFAM TIGR00033 aroC: chorismate synthase 10 351 4.3E-141 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 SUPERFAMILY SSF103263 4 353 1.26E-147 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 Pfam PF01264 Chorismate synthase 10 346 8.9E-141 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 PIRSF PIRSF001456 3 362 1.5E-140 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 ProSitePatterns PS00789 Chorismate synthase signature 3. 320 336 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06090 6a6e88cf57eefccc9b617de308e471ab 368 Gene3D G3DSA:3.60.150.10 1 364 2.2E-154 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 R615_06005 0206e9b3df2856a422c9346288a30141 209 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 4 200 2.0E-37 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 R615_06005 0206e9b3df2856a422c9346288a30141 209 Pfam PF01914 MarC family integral membrane protein 6 204 4.2E-44 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 R615_01635 b7a7def9b71579ab943127b9cd654a80 254 Pfam PF00977 Histidine biosynthesis protein 6 236 3.6E-90 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 R615_01635 b7a7def9b71579ab943127b9cd654a80 254 SUPERFAMILY SSF51366 3 252 2.98E-83 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_01635 b7a7def9b71579ab943127b9cd654a80 254 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 252 47.907 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 R615_01635 b7a7def9b71579ab943127b9cd654a80 254 Gene3D G3DSA:3.20.20.70 1 254 1.8E-109 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_01635 b7a7def9b71579ab943127b9cd654a80 254 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 2 252 2.2E-112 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 R615_09235 dd1f7f5f1e85baa28430414165d35a4f 285 Pfam PF11932 Protein of unknown function (DUF3450) 42 266 3.1E-69 T 12-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 R615_09235 dd1f7f5f1e85baa28430414165d35a4f 285 PIRSF PIRSF028069 36 274 7.0E-69 T 12-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 R615_09790 27a96e3ddad0c2eb30e8c6854505c589 687 Pfam PF11992 Domain of unknown function (DUF3488) 13 331 1.2E-93 T 12-10-2018 IPR021878 Protein of unknown function DUF3488 R615_09790 27a96e3ddad0c2eb30e8c6854505c589 687 SUPERFAMILY SSF54001 282 605 1.96E-58 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_09790 27a96e3ddad0c2eb30e8c6854505c589 687 SMART SM00460 408 479 3.5E-18 T 12-10-2018 IPR002931 Transglutaminase-like R615_09790 27a96e3ddad0c2eb30e8c6854505c589 687 Pfam PF01841 Transglutaminase-like superfamily 361 477 1.6E-25 T 12-10-2018 IPR002931 Transglutaminase-like R615_09790 27a96e3ddad0c2eb30e8c6854505c589 687 Gene3D G3DSA:3.10.620.30 322 496 1.5E-21 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 262 4.1E-57 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 Gene3D G3DSA:3.40.50.720 4 316 1.3E-95 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 5.9E-25 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 5.9E-25 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 5.9E-25 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 5.9E-25 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 Gene3D G3DSA:3.90.25.10 180 328 1.3E-95 T 12-10-2018 R615_08115 6d0babfa28b365e24e5cf4471680e59a 335 SUPERFAMILY SSF51735 2 333 4.33E-87 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_05750 31777cdf2fb08d671d8f41bf6196598e 543 Gene3D G3DSA:3.40.50.300 369 536 5.0E-19 T 12-10-2018 R615_05750 31777cdf2fb08d671d8f41bf6196598e 543 Pfam PF13245 AAA domain 10 222 5.7E-16 T 12-10-2018 R615_05750 31777cdf2fb08d671d8f41bf6196598e 543 Gene3D G3DSA:3.40.50.300 149 266 2.4E-18 T 12-10-2018 R615_05750 31777cdf2fb08d671d8f41bf6196598e 543 Pfam PF13361 UvrD-like helicase C-terminal domain 367 513 1.1E-14 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 R615_05750 31777cdf2fb08d671d8f41bf6196598e 543 SUPERFAMILY SSF52540 4 531 1.65E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05750 31777cdf2fb08d671d8f41bf6196598e 543 Gene3D G3DSA:3.40.50.300 4 137 6.9E-16 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF01627 Hpt domain 1302 1381 1.2E-9 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 869 983 2.0E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF00512 His Kinase A (phospho-acceptor) domain 757 822 6.5E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF00989 PAS fold 332 444 3.7E-14 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF00072 Response regulator receiver domain 1001 1119 2.1E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF00072 Response regulator receiver domain 1146 1258 2.5E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF55785 320 441 9.18E-19 T 12-10-2018 IPR035965 PAS domain superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF55785 487 607 2.74E-17 T 12-10-2018 IPR035965 PAS domain superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.30.450.20 621 689 2.2E-13 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00388 757 822 8.5E-23 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00448 1143 1258 4.9E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00448 999 1119 1.7E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF52172 999 1126 1.01E-21 T 12-10-2018 IPR011006 CheY-like superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.30.565.10 823 988 1.1E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF08447 PAS fold 642 731 5.9E-13 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF47226 1288 1395 5.5E-14 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 481 614 8.1E-16 T 12-10-2018 IPR000014 PAS domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 329 453 5.4E-20 T 12-10-2018 IPR000014 PAS domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:1.20.120.160 1282 1390 1.6E-15 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.30.450.350 70 270 3.4E-17 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF03924 CHASE domain 66 251 1.5E-38 T 12-10-2018 IPR006189 CHASE domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00091 619 689 47.0 T 12-10-2018 IPR000014 PAS domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00091 477 546 1.3E-5 T 12-10-2018 IPR000014 PAS domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00091 331 396 8.7E-10 T 12-10-2018 IPR000014 PAS domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:2.10.70.100 692 737 6.7E-12 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 969 982 1.6E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 945 963 1.6E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 910 924 1.6E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 928 938 1.6E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF55785 628 735 1.52E-13 T 12-10-2018 IPR035965 PAS domain superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.30.450.20 338 453 7.3E-22 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00086 565 607 1.7E-7 T 12-10-2018 IPR001610 PAC motif R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00086 405 447 24.0 T 12-10-2018 IPR001610 PAC motif R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00086 695 737 7.6E-5 T 12-10-2018 IPR001610 PAC motif R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.40.50.2300 1138 1276 1.2E-36 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.30.450.20 475 620 1.5E-27 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF55874 811 983 3.8E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM01079 63 253 1.1E-52 T 12-10-2018 IPR006189 CHASE domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:3.40.50.2300 994 1137 2.6E-23 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Gene3D G3DSA:1.10.287.130 743 822 4.4E-25 T 12-10-2018 R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF52172 1140 1258 8.25E-35 T 12-10-2018 IPR011006 CheY-like superfamily R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 Pfam PF13426 PAS domain 491 606 8.6E-13 T 12-10-2018 IPR000014 PAS domain R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SMART SM00387 869 985 3.1E-32 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_08070 0aa6ebb3ea0f0fe454cd2f7c6829a973 1398 SUPERFAMILY SSF47384 743 823 1.12E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_09725 72be51f130363844639673ea720007cf 332 Pfam PF12224 Putative amidoligase enzyme 22 283 2.3E-64 T 12-10-2018 IPR022025 Putative amidoligase enzyme R615_02410 c2dd60976a97a291327c0c5f247e9667 499 Pfam PF05199 GMC oxidoreductase 425 480 3.2E-13 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 R615_02410 c2dd60976a97a291327c0c5f247e9667 499 Pfam PF00890 FAD binding domain 6 54 1.4E-6 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_02410 c2dd60976a97a291327c0c5f247e9667 499 Pfam PF00732 GMC oxidoreductase 94 276 5.8E-7 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_02410 c2dd60976a97a291327c0c5f247e9667 499 Gene3D G3DSA:3.50.50.60 8 487 4.9E-82 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_02410 c2dd60976a97a291327c0c5f247e9667 499 SUPERFAMILY SSF51905 1 489 1.51E-37 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_02410 c2dd60976a97a291327c0c5f247e9667 499 Gene3D G3DSA:3.30.410.10 147 423 4.9E-82 T 12-10-2018 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Pfam PF02810 SEC-C motif 893 911 2.9E-9 T 12-10-2018 IPR004027 SEC-C motif R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 ProSitePatterns PS01312 SecA family signature. 503 518 - T 12-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 835 19.928 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 SUPERFAMILY SSF52540 421 621 8.49E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 SUPERFAMILY SSF81767 230 371 1.23E-41 T 12-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Gene3D G3DSA:3.90.1440.10 229 371 2.8E-175 T 12-10-2018 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 416 429 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 379 396 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 342 364 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 170 190 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 101 115 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 117 127 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 PRINTS PR00906 SecA protein signature 63 87 3.4E-67 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Pfam PF07517 SecA DEAD-like domain 7 404 7.7E-133 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 SUPERFAMILY SSF81886 623 901 4.32E-82 T 12-10-2018 IPR036266 SecA, Wing/Scaffold superfamily R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Gene3D G3DSA:1.10.3060.10 624 836 1.8E-77 T 12-10-2018 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 821 0.0 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Gene3D G3DSA:3.40.50.300 23 418 2.8E-175 T 12-10-2018 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Gene3D G3DSA:3.40.50.300 420 623 3.9E-87 T 12-10-2018 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 SMART SM00958 228 361 4.3E-74 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Pfam PF07516 SecA Wing and Scaffold domain 621 832 1.0E-67 T 12-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 Pfam PF01043 SecA preprotein cross-linking domain 232 361 4.6E-37 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 SMART SM00957 6 405 1.4E-299 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 R615_13360 b2245ae028c15b537a8c66657e7e94a7 913 SUPERFAMILY SSF52540 4 418 1.46E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02325 359f1cc5010e055f30c4e61d1819a163 322 SUPERFAMILY SSF88659 216 314 3.55E-25 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Gene3D G3DSA:1.10.601.10 1 154 6.5E-47 T 12-10-2018 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 278 304 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Gene3D G3DSA:1.10.10.10 158 233 3.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Pfam PF00140 Sigma-70 factor, region 1.2 47 79 2.7E-13 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 PRINTS PR00046 Major sigma-70 factor signature 133 141 9.9E-28 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 PRINTS PR00046 Major sigma-70 factor signature 109 122 9.9E-28 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 PRINTS PR00046 Major sigma-70 factor signature 257 269 9.9E-28 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 PRINTS PR00046 Major sigma-70 factor signature 293 304 9.9E-28 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 PRINTS PR00046 Major sigma-70 factor signature 278 293 9.9E-28 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Pfam PF04542 Sigma-70 region 2 85 154 1.6E-20 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Pfam PF04539 Sigma-70 region 3 165 239 6.5E-23 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Gene3D G3DSA:1.10.10.10 235 317 1.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_02325 359f1cc5010e055f30c4e61d1819a163 322 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 82 307 2.5E-37 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 SUPERFAMILY SSF88659 158 232 3.92E-16 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 3 319 40.463 T 12-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 109 122 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 Pfam PF04545 Sigma-70, region 4 253 306 2.2E-16 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 39 318 2.5E-139 T 12-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_02325 359f1cc5010e055f30c4e61d1819a163 322 SUPERFAMILY SSF88946 47 155 3.92E-44 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 Gene3D G3DSA:2.40.50.180 39 153 1.3E-25 T 12-10-2018 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 SMART SM00448 179 300 2.9E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 Pfam PF01584 CheW-like domain 21 156 7.4E-32 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 Gene3D G3DSA:2.30.30.40 25 147 1.3E-25 T 12-10-2018 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 SUPERFAMILY SSF52172 178 304 1.42E-24 T 12-10-2018 IPR011006 CheY-like superfamily R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 Gene3D G3DSA:3.40.50.2300 178 309 7.7E-25 T 12-10-2018 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 Pfam PF00072 Response regulator receiver domain 181 297 2.3E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 PIRSF PIRSF002867 1 307 3.3E-104 T 12-10-2018 IPR024181 Chemotaxis response regulator CheV R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 SUPERFAMILY SSF50341 16 156 2.35E-32 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_04730 8a8561a31fcf3ff1782b624063ea677f 309 SMART SM00260 17 153 1.6E-17 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_11795 37b645cfd2a9d375f212115fde34c99a 303 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 41 283 1.7E-12 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme R615_11795 37b645cfd2a9d375f212115fde34c99a 303 Gene3D G3DSA:3.40.50.1100 44 146 2.9E-40 T 12-10-2018 R615_11795 37b645cfd2a9d375f212115fde34c99a 303 Gene3D G3DSA:3.40.50.1100 16 286 2.9E-40 T 12-10-2018 R615_11795 37b645cfd2a9d375f212115fde34c99a 303 PIRSF PIRSF006278 5 299 7.3E-49 T 12-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase R615_11795 37b645cfd2a9d375f212115fde34c99a 303 SUPERFAMILY SSF53686 27 289 1.82E-36 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme R615_15995 a2245cd9d444ed4423d087fd33171c5a 126 Gene3D G3DSA:3.40.250.10 1 119 3.1E-32 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_15995 a2245cd9d444ed4423d087fd33171c5a 126 Pfam PF00581 Rhodanese-like domain 20 112 8.8E-18 T 12-10-2018 IPR001763 Rhodanese-like domain R615_15995 a2245cd9d444ed4423d087fd33171c5a 126 SMART SM00450 18 117 6.2E-23 T 12-10-2018 IPR001763 Rhodanese-like domain R615_15995 a2245cd9d444ed4423d087fd33171c5a 126 SUPERFAMILY SSF52821 10 118 6.55E-32 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_07305 6871c239a7300bd86fd5302d7bff5d0f 262 Pfam PF01471 Putative peptidoglycan binding domain 206 260 1.0E-14 T 12-10-2018 IPR002477 Peptidoglycan binding-like R615_07305 6871c239a7300bd86fd5302d7bff5d0f 262 Pfam PF00182 Chitinase class I 43 142 1.7E-9 T 12-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 R615_07305 6871c239a7300bd86fd5302d7bff5d0f 262 SUPERFAMILY SSF53955 31 179 3.8E-42 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_07305 6871c239a7300bd86fd5302d7bff5d0f 262 Gene3D G3DSA:1.10.101.10 193 262 7.5E-22 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 R615_07305 6871c239a7300bd86fd5302d7bff5d0f 262 SUPERFAMILY SSF47090 197 260 3.14E-18 T 12-10-2018 IPR036365 PGBD-like superfamily R615_07305 6871c239a7300bd86fd5302d7bff5d0f 262 Gene3D G3DSA:1.10.530.70 20 182 3.8E-24 T 12-10-2018 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 SUPERFAMILY SSF50249 1 63 3.31E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Pfam PF14520 Helix-hairpin-helix domain 72 130 3.2E-16 T 12-10-2018 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Pfam PF07499 RuvA, C-terminal domain 157 197 4.5E-11 T 12-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 SUPERFAMILY SSF46929 154 198 3.14E-9 T 12-10-2018 IPR036267 RuvA, C-terminal domain superfamily R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 30.006 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 200 9.3E-55 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Pfam PF01330 RuvA N terminal domain 1 62 1.6E-20 T 12-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Gene3D G3DSA:1.10.8.10 154 200 5.4E-17 T 12-10-2018 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 SUPERFAMILY SSF47781 66 136 2.85E-20 T 12-10-2018 IPR010994 RuvA domain 2-like R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Gene3D G3DSA:1.10.150.20 67 138 1.6E-25 T 12-10-2018 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 Gene3D G3DSA:2.40.50.140 1 66 1.9E-25 T 12-10-2018 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 SMART SM00278 108 127 0.56 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_06945 a08b4ebbf1bf1a31d14a0599d31ecb90 203 SMART SM00278 73 92 14.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Gene3D G3DSA:1.10.860.10 467 602 5.1E-11 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Gene3D G3DSA:3.40.1360.10 241 367 3.6E-41 T 12-10-2018 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 TIGRFAM TIGR01391 dnaG: DNA primase 4 418 2.9E-149 T 12-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 SUPERFAMILY SSF57783 4 101 1.65E-37 T 12-10-2018 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 SUPERFAMILY SSF56731 115 425 3.01E-108 T 12-10-2018 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Gene3D G3DSA:3.90.980.10 108 240 4.1E-44 T 12-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Hamap MF_00974 DNA primase [dnaG]. 4 594 29.158 T 12-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 2.0E-10 T 12-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 PIRSF PIRSF002811 2 606 1.2E-150 T 12-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Gene3D G3DSA:3.90.580.10 1 103 8.2E-40 T 12-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 SUPERFAMILY SSF117023 477 596 1.22E-8 T 12-10-2018 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 SMART SM00493 259 330 2.2E-16 T 12-10-2018 IPR006171 TOPRIM domain R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Gene3D G3DSA:1.20.50.20 368 425 1.2E-21 T 12-10-2018 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 SMART SM00400 36 90 2.8E-35 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Pfam PF08278 DNA primase DnaG DnaB-binding 477 592 7.9E-12 T 12-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Pfam PF01807 CHC2 zinc finger 6 101 6.4E-40 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Pfam PF08275 DNA primase catalytic core, N-terminal domain 125 252 8.9E-42 T 12-10-2018 IPR013264 DNA primase, catalytic core, N-terminal R615_14510 2c3e78aec51df636d5a194f582f902d1 609 Pfam PF13662 Toprim domain 261 327 1.5E-16 T 12-10-2018 IPR006171 TOPRIM domain R615_01450 d006da56da8e302a0bcc8057f51dd896 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 160 315 8.7E-15 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 12-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 SMART SM00859 3 141 8.9E-62 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 344 4.2E-131 T 12-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 Gene3D G3DSA:3.30.360.10 147 312 2.9E-128 T 12-10-2018 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 SUPERFAMILY SSF51735 2 173 5.33E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_01450 d006da56da8e302a0bcc8057f51dd896 344 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 338 42.979 T 12-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 141 7.9E-39 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 Gene3D G3DSA:3.40.50.720 3 330 2.9E-128 T 12-10-2018 R615_01450 d006da56da8e302a0bcc8057f51dd896 344 SUPERFAMILY SSF55347 149 312 1.28E-47 T 12-10-2018 R615_11405 1c095390bb7e2e4e33e4cc02ba263c89 78 Gene3D G3DSA:3.40.5.90 1 78 3.3E-33 T 12-10-2018 R615_11405 1c095390bb7e2e4e33e4cc02ba263c89 78 SMART SM00704 9 46 5.2E-13 T 12-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 R615_11405 1c095390bb7e2e4e33e4cc02ba263c89 78 SMART SM00704 47 78 0.027 T 12-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 R615_11405 1c095390bb7e2e4e33e4cc02ba263c89 78 Pfam PF09360 Iron-binding zinc finger CDGSH type 14 41 2.5E-11 T 12-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 R615_06935 ea05201e14067eedb3c126223f53f90b 111 Pfam PF14343 PrcB C-terminal 36 88 5.1E-10 T 12-10-2018 IPR025748 PrcB C-terminal domain R615_01640 44b43e64e269996c986e7c775cd610a5 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 4.8E-25 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_01640 44b43e64e269996c986e7c775cd610a5 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 4.8E-25 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_01640 44b43e64e269996c986e7c775cd610a5 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 4.8E-25 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_01640 44b43e64e269996c986e7c775cd610a5 521 Gene3D G3DSA:1.10.287.950 190 521 3.5E-71 T 12-10-2018 R615_01640 44b43e64e269996c986e7c775cd610a5 521 SMART SM00283 259 520 8.3E-81 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_01640 44b43e64e269996c986e7c775cd610a5 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 305 487 8.8E-43 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_01640 44b43e64e269996c986e7c775cd610a5 521 SMART SM00304 279 339 17.0 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_01640 44b43e64e269996c986e7c775cd610a5 521 SMART SM00304 191 244 1.6E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_01640 44b43e64e269996c986e7c775cd610a5 521 Gene3D G3DSA:3.30.450.290 24 162 6.3E-7 T 12-10-2018 R615_01640 44b43e64e269996c986e7c775cd610a5 521 SUPERFAMILY SSF58104 212 520 4.05E-72 T 12-10-2018 R615_09920 99c3c482e807688e16455e84e04731d1 154 SUPERFAMILY SSF52218 3 148 5.94E-20 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_09920 99c3c482e807688e16455e84e04731d1 154 Gene3D G3DSA:3.40.50.360 1 152 1.2E-11 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 Gene3D G3DSA:3.40.50.740 119 575 1.8E-76 T 12-10-2018 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 Pfam PF00384 Molybdopterin oxidoreductase 108 488 4.7E-33 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 PIRSF PIRSF000144 3 729 4.9E-170 T 12-10-2018 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 Gene3D G3DSA:3.40.228.10 183 398 1.8E-76 T 12-10-2018 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 SUPERFAMILY SSF53706 38 614 7.59E-112 T 12-10-2018 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 Pfam PF01568 Molydopterin dinucleotide binding domain 623 723 9.5E-13 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 18 727 8.2E-189 T 12-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 Gene3D G3DSA:2.40.40.20 614 728 5.2E-10 T 12-10-2018 R615_01945 cbc0d8444fcdaa12a1cce9a09b76c547 729 SUPERFAMILY SSF50692 616 727 6.33E-18 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily R615_02615 0069557b8077e6c8b83a1fde4bfebb4c 164 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 133 6.6E-40 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_02615 0069557b8077e6c8b83a1fde4bfebb4c 164 SUPERFAMILY SSF55083 1 148 1.44E-49 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_02615 0069557b8077e6c8b83a1fde4bfebb4c 164 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 88 99 - T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_02615 0069557b8077e6c8b83a1fde4bfebb4c 164 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 133 4.8E-34 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_02615 0069557b8077e6c8b83a1fde4bfebb4c 164 Gene3D G3DSA:3.30.70.560 1 158 2.3E-52 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Pfam PF00140 Sigma-70 factor, region 1.2 96 126 4.0E-12 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Pfam PF03979 Sigma-70 factor, region 1.1 5 81 1.6E-27 T 12-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 611 44.258 T 12-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 402 415 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Pfam PF04542 Sigma-70 region 2 378 447 1.7E-21 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Pfam PF04545 Sigma-70, region 4 546 599 1.0E-18 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 374 599 2.1E-36 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 374 610 7.6E-122 T 12-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Gene3D G3DSA:1.10.601.10 111 447 1.7E-127 T 12-10-2018 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Gene3D G3DSA:1.10.10.10 527 612 7.7E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 SUPERFAMILY SSF88659 451 524 6.32E-22 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Pfam PF04546 Sigma-70, non-essential region 137 347 1.7E-55 T 12-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 SUPERFAMILY SSF88659 508 610 3.92E-26 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 PRINTS PR00046 Major sigma-70 factor signature 586 597 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 PRINTS PR00046 Major sigma-70 factor signature 402 415 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 PRINTS PR00046 Major sigma-70 factor signature 550 562 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 PRINTS PR00046 Major sigma-70 factor signature 571 586 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 PRINTS PR00046 Major sigma-70 factor signature 426 434 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Gene3D G3DSA:1.10.220.120 3 65 1.5E-25 T 12-10-2018 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Pfam PF04539 Sigma-70 region 3 457 532 1.8E-31 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 Gene3D G3DSA:1.10.10.10 451 526 1.1E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 571 597 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14515 e226d3ecb322214a40ee0d8640ed5b3d 612 SUPERFAMILY SSF88946 113 445 2.98E-96 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 119 1.2E-18 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 172 212 7.8E-18 T 12-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 Gene3D G3DSA:2.30.110.10 3 212 7.0E-77 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 10 212 36.912 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 2 212 1.6E-82 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 182 195 - T 12-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 PIRSF PIRSF000190 1 212 1.6E-75 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_11085 501ee741b05ecd05db8dc48342ab563d 212 SUPERFAMILY SSF50475 7 212 2.95E-61 T 12-10-2018 R615_11430 7d939b18de198796098929587649c895 331 Pfam PF07859 alpha/beta hydrolase fold 96 310 1.6E-19 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 R615_11430 7d939b18de198796098929587649c895 331 SUPERFAMILY SSF53474 61 328 4.39E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11430 7d939b18de198796098929587649c895 331 Gene3D G3DSA:3.40.50.1820 59 330 9.7E-56 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_10705 53fafcacb39f67abae846ec12862a2d0 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 89 120 5.2E-8 T 12-10-2018 IPR001451 Hexapeptide repeat R615_10705 53fafcacb39f67abae846ec12862a2d0 174 SUPERFAMILY SSF51161 6 170 2.22E-46 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_10705 53fafcacb39f67abae846ec12862a2d0 174 Gene3D G3DSA:2.160.10.10 2 172 4.7E-61 T 12-10-2018 R615_15410 3f7e947b1a90244a638cda8140525530 221 Gene3D G3DSA:3.40.50.150 123 218 1.3E-8 T 12-10-2018 R615_15410 3f7e947b1a90244a638cda8140525530 221 Pfam PF13489 Methyltransferase domain 76 209 2.1E-21 T 12-10-2018 R615_15410 3f7e947b1a90244a638cda8140525530 221 SUPERFAMILY SSF53335 74 213 2.21E-19 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_15410 3f7e947b1a90244a638cda8140525530 221 Gene3D G3DSA:3.40.50.150 10 122 4.1E-7 T 12-10-2018 R615_06385 acb6bfe0fd52ac476627748c61d06383 193 Pfam PF00692 dUTPase 76 186 1.1E-11 T 12-10-2018 IPR029054 dUTPase-like R615_06385 acb6bfe0fd52ac476627748c61d06383 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 34.066 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 R615_06385 acb6bfe0fd52ac476627748c61d06383 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 4.2E-62 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 R615_06385 acb6bfe0fd52ac476627748c61d06383 193 SUPERFAMILY SSF51283 1 193 1.05E-57 T 12-10-2018 IPR036157 dUTPase-like superfamily R615_06385 acb6bfe0fd52ac476627748c61d06383 193 Gene3D G3DSA:2.70.40.10 1 193 8.1E-53 T 12-10-2018 IPR036157 dUTPase-like superfamily R615_09605 678656a2010ea67e0670515a7c02bded 390 SMART SM00474 9 177 5.1E-29 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 R615_09605 678656a2010ea67e0670515a7c02bded 390 TIGRFAM TIGR01388 rnd: ribonuclease D 11 372 4.9E-115 T 12-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 R615_09605 678656a2010ea67e0670515a7c02bded 390 Pfam PF00570 HRDC domain 223 286 1.8E-11 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 R615_09605 678656a2010ea67e0670515a7c02bded 390 Gene3D G3DSA:1.10.150.80 310 378 4.3E-10 T 12-10-2018 R615_09605 678656a2010ea67e0670515a7c02bded 390 Gene3D G3DSA:3.30.420.10 10 199 2.9E-57 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_09605 678656a2010ea67e0670515a7c02bded 390 SUPERFAMILY SSF47819 302 376 1.18E-15 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 R615_09605 678656a2010ea67e0670515a7c02bded 390 SUPERFAMILY SSF47819 206 306 1.46E-23 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 R615_09605 678656a2010ea67e0670515a7c02bded 390 SUPERFAMILY SSF53098 9 195 1.23E-56 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_09605 678656a2010ea67e0670515a7c02bded 390 Hamap MF_01899 Ribonuclease D [rnd]. 9 376 37.828 T 12-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 R615_09605 678656a2010ea67e0670515a7c02bded 390 Pfam PF01612 3'-5' exonuclease 11 176 6.3E-31 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 R615_09605 678656a2010ea67e0670515a7c02bded 390 Gene3D G3DSA:1.10.150.80 205 300 6.5E-20 T 12-10-2018 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 690 25.372 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 Pfam PF05746 DALR anticodon binding domain 583 678 4.7E-10 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 690 1.6E-243 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 SUPERFAMILY SSF109604 359 539 5.83E-16 T 12-10-2018 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 1.6E-208 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 SMART SM00836 586 682 0.0041 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 395 414 2.6E-32 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 248 263 2.6E-32 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 2.6E-32 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 2.6E-32 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_00080 a3e0e197652dfadffc2705bd2c7f973a 690 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 319 335 2.6E-32 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 R615_06615 2bec17347241014c06affb5c7cdfa00e 478 Pfam PF13193 AMP-binding enzyme C-terminal domain 400 472 1.3E-12 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_06615 2bec17347241014c06affb5c7cdfa00e 478 Pfam PF00501 AMP-binding enzyme 6 390 4.7E-94 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_06615 2bec17347241014c06affb5c7cdfa00e 478 ProSitePatterns PS00455 Putative AMP-binding domain signature. 145 156 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_06615 2bec17347241014c06affb5c7cdfa00e 478 Gene3D G3DSA:3.30.300.30 386 478 6.7E-20 T 12-10-2018 R615_06615 2bec17347241014c06affb5c7cdfa00e 478 SUPERFAMILY SSF56801 2 478 4.58E-132 T 12-10-2018 R615_06615 2bec17347241014c06affb5c7cdfa00e 478 Gene3D G3DSA:3.40.50.12780 1 385 8.1E-103 T 12-10-2018 R615_00920 f23d464a05886bc2b84dbf2e0ffa643f 204 SUPERFAMILY SSF46689 8 78 8.98E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_00920 f23d464a05886bc2b84dbf2e0ffa643f 204 SUPERFAMILY SSF48498 84 175 7.42E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_00920 f23d464a05886bc2b84dbf2e0ffa643f 204 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 196 36.118 T 12-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 R615_00920 f23d464a05886bc2b84dbf2e0ffa643f 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 1.0E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_00920 f23d464a05886bc2b84dbf2e0ffa643f 204 Gene3D G3DSA:1.10.357.10 9 196 3.0E-58 T 12-10-2018 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00101 Aspartate carbamoyltransferase signature 53 75 7.2E-31 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00101 Aspartate carbamoyltransferase signature 91 100 7.2E-31 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00101 Aspartate carbamoyltransferase signature 274 279 7.2E-31 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00101 Aspartate carbamoyltransferase signature 298 312 7.2E-31 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00101 Aspartate carbamoyltransferase signature 148 165 7.2E-31 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00101 Aspartate carbamoyltransferase signature 233 242 7.2E-31 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 63 70 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 63 82 1.9E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 282 305 1.9E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 149 160 1.9E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 279 1.9E-19 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 Gene3D G3DSA:3.40.50.1370 149 304 4.9E-88 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 16 319 40.916 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 Gene3D G3DSA:3.40.50.1370 18 315 4.9E-88 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 SUPERFAMILY SSF53671 15 319 7.33E-94 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 168 315 4.8E-24 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 17 317 4.9E-91 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_01210 b51ecebaca63dd39ad4de9eed54c2b6a 332 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 17 161 3.2E-39 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 SUPERFAMILY SSF46689 33 104 1.12E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 PRINTS PR01591 DNA-binding protein FIS signature 49 64 6.3E-13 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 PRINTS PR01591 DNA-binding protein FIS signature 33 49 6.3E-13 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 PRINTS PR01591 DNA-binding protein FIS signature 64 76 6.3E-13 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 68 85 1.8E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 85 105 1.8E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 PIRSF PIRSF002097 4 105 1.9E-37 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 Pfam PF02954 Bacterial regulatory protein, Fis family 62 102 5.1E-12 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03425 d298f9af7dfce0dfc926d75c29f164bd 105 Gene3D G3DSA:1.10.10.60 8 104 6.8E-25 T 12-10-2018 R615_03310 9273c56bee6d6fd676543660f43b4075 147 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 27 120 1.9E-11 T 12-10-2018 IPR031982 Type IV minor pilin ComP R615_03310 9273c56bee6d6fd676543660f43b4075 147 SUPERFAMILY SSF54523 6 90 2.25E-19 T 12-10-2018 R615_03310 9273c56bee6d6fd676543660f43b4075 147 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_03310 9273c56bee6d6fd676543660f43b4075 147 PRINTS PR00813 Bacterial general secretion pathway protein G signature 41 59 2.8E-8 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 R615_03310 9273c56bee6d6fd676543660f43b4075 147 PRINTS PR00813 Bacterial general secretion pathway protein G signature 5 30 2.8E-8 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 R615_03310 9273c56bee6d6fd676543660f43b4075 147 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 2.6E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_03310 9273c56bee6d6fd676543660f43b4075 147 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 5.5E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_03310 9273c56bee6d6fd676543660f43b4075 147 Gene3D G3DSA:3.30.700.10 6 145 1.4E-24 T 12-10-2018 R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 Gene3D G3DSA:1.10.357.10 68 190 4.0E-10 T 12-10-2018 R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.4E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.4E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 SUPERFAMILY SSF48498 79 189 2.91E-10 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 SUPERFAMILY SSF46689 2 70 9.75E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 2.6E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_04285 225dba6d0f179dd1eea6a5edbd85bb44 193 Gene3D G3DSA:1.10.10.60 1 65 5.4E-23 T 12-10-2018 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 SUPERFAMILY SSF52954 329 423 5.73E-20 T 12-10-2018 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 423 33.054 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 Pfam PF03129 Anticodon binding domain 344 423 1.4E-7 T 12-10-2018 IPR004154 Anticodon-binding R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 Gene3D G3DSA:3.40.50.800 328 423 7.9E-20 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 410 1.5E-154 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 PIRSF PIRSF001549 1 425 4.7E-122 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 Pfam PF13393 Histidyl-tRNA synthetase 10 312 6.1E-45 T 12-10-2018 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 SUPERFAMILY SSF55681 5 322 2.79E-105 T 12-10-2018 R615_12625 dcc4fa554cfd7b83a93329b4feb3912c 426 Gene3D G3DSA:3.30.930.10 2 325 6.9E-118 T 12-10-2018 R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 281 370 6.3E-20 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 SUPERFAMILY SSF53901 249 370 2.84E-24 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 Gene3D G3DSA:3.40.47.10 1 214 5.0E-53 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 Gene3D G3DSA:3.40.47.10 218 371 3.5E-33 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 229 1.6E-13 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 R615_03995 13f6e674de22f8713c8c35bc766aad5e 372 SUPERFAMILY SSF53901 2 214 6.61E-45 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 Gene3D G3DSA:3.40.50.300 217 398 2.6E-46 T 12-10-2018 R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 SMART SM00487 21 226 1.2E-52 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 157 165 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 SMART SM00490 262 343 2.2E-30 T 12-10-2018 IPR001650 Helicase, C-terminal R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 SUPERFAMILY SSF52540 79 364 2.24E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 SUPERFAMILY SSF52540 25 104 6.55E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 Pfam PF00270 DEAD/DEAH box helicase 26 199 4.1E-48 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 Pfam PF00271 Helicase conserved C-terminal domain 237 343 3.7E-26 T 12-10-2018 IPR001650 Helicase, C-terminal R615_07505 742d9080a2dfdf64684aab42de29f0c4 453 Gene3D G3DSA:3.40.50.300 1 211 4.0E-70 T 12-10-2018 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 Gene3D G3DSA:3.30.70.580 68 226 3.0E-49 T 12-10-2018 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 SMART SM00363 3 71 7.9E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 Pfam PF00849 RNA pseudouridylate synthase 66 196 1.6E-14 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 Pfam PF01479 S4 domain 3 48 9.4E-11 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 Gene3D G3DSA:3.10.290.10 1 59 5.6E-20 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 SUPERFAMILY SSF55120 64 234 7.02E-43 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 SUPERFAMILY SSF55174 3 94 2.02E-13 T 12-10-2018 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 Gene3D G3DSA:3.30.70.1560 128 218 3.0E-49 T 12-10-2018 R615_06190 bcb2e23da2c30db9003c12962699b7e4 283 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 70 229 5.1E-54 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 SUPERFAMILY SSF54211 4 184 2.73E-38 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_06625 e1497cb061d8a7dd33da53c531278c90 356 SUPERFAMILY SSF55060 190 336 4.73E-32 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily R615_06625 e1497cb061d8a7dd33da53c531278c90 356 Gene3D G3DSA:3.30.230.120 2 348 3.0E-118 T 12-10-2018 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 Pfam PF00288 GHMP kinases N terminal domain 97 164 7.1E-13 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 Pfam PF08544 GHMP kinases C terminal 238 317 3.4E-10 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain R615_06625 e1497cb061d8a7dd33da53c531278c90 356 PIRSF PIRSF036406 2 340 3.0E-123 T 12-10-2018 IPR014606 D,D-heptose 7-phosphate kinase KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 PRINTS PR00960 LmbP protein signature 144 163 1.5E-43 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 PRINTS PR00960 LmbP protein signature 8 23 1.5E-43 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 PRINTS PR00960 LmbP protein signature 281 300 1.5E-43 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 PRINTS PR00960 LmbP protein signature 102 123 1.5E-43 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 R615_06625 e1497cb061d8a7dd33da53c531278c90 356 PRINTS PR00960 LmbP protein signature 253 277 1.5E-43 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 R615_15255 94a46b9081be2235c2d0b26da066ac74 212 Gene3D G3DSA:3.30.70.60 110 212 3.6E-35 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 R615_15255 94a46b9081be2235c2d0b26da066ac74 212 PIRSF PIRSF016482 10 211 5.0E-60 T 12-10-2018 IPR007445 Pilus assembly protein, PilO R615_15255 94a46b9081be2235c2d0b26da066ac74 212 Pfam PF04350 Pilus assembly protein, PilO 65 205 2.8E-51 T 12-10-2018 IPR007445 Pilus assembly protein, PilO R615_15255 94a46b9081be2235c2d0b26da066ac74 212 Gene3D G3DSA:1.10.287.540 73 109 1.1E-16 T 12-10-2018 R615_00385 469cdec7b06602652c08ea90242ed94a 618 SUPERFAMILY SSF53474 289 538 9.01E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 Gene3D G3DSA:1.10.1040.10 176 321 1.8E-33 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 176 315 7.6E-23 T 12-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 SUPERFAMILY SSF51735 1 123 4.45E-14 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 Gene3D G3DSA:3.40.50.720 2 174 2.3E-34 T 12-10-2018 R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 316 4.7E-59 T 12-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 151 2.7E-30 T 12-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain R615_14575 812deea9256d0822b8cc5ac53a97f3fe 345 SUPERFAMILY SSF48179 176 315 4.42E-23 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_07650 8452ec366bd4cc026f2abbd38667d2f0 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 16 187 1.1E-23 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 R615_07650 8452ec366bd4cc026f2abbd38667d2f0 192 SUPERFAMILY SSF101327 15 171 2.75E-11 T 12-10-2018 IPR036255 YgfB-like superfamily R615_07650 8452ec366bd4cc026f2abbd38667d2f0 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 14 184 8.5E-25 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 R615_06325 44308e8cbda4428670a17a93f77a8753 267 SUPERFAMILY SSF53448 5 223 1.97E-52 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_06325 44308e8cbda4428670a17a93f77a8753 267 Gene3D G3DSA:3.90.550.10 1 236 8.0E-65 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_06325 44308e8cbda4428670a17a93f77a8753 267 Pfam PF00535 Glycosyl transferase family 2 8 135 9.2E-24 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 86 294 1.5E-83 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Gene3D G3DSA:2.40.420.20 299 390 1.2E-24 T 12-10-2018 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Gene3D G3DSA:2.40.30.170 222 296 3.0E-30 T 12-10-2018 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Gene3D G3DSA:2.40.50.100 178 221 3.0E-30 T 12-10-2018 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Gene3D G3DSA:2.40.50.100 102 154 5.1E-6 T 12-10-2018 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 SUPERFAMILY SSF111369 102 299 9.68E-20 T 12-10-2018 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Pfam PF11604 Copper binding periplasmic protein CusF 394 458 4.4E-20 T 12-10-2018 IPR021647 Copper binding periplasmic protein CusF R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Gene3D G3DSA:2.40.50.320 391 460 5.1E-16 T 12-10-2018 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 190 368 2.2E-36 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_09010 70fdbd1c483147a4dd9b608bce2e3b2c 535 Gene3D G3DSA:1.10.287.470 161 171 3.0E-30 T 12-10-2018 R615_00665 09d37d309670713e7937f15db37748d8 548 SUPERFAMILY SSF48452 173 342 1.43E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_00665 09d37d309670713e7937f15db37748d8 548 Pfam PF00072 Response regulator receiver domain 13 127 5.9E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00665 09d37d309670713e7937f15db37748d8 548 SMART SM00448 11 127 1.4E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00665 09d37d309670713e7937f15db37748d8 548 Pfam PF13432 Tetratricopeptide repeat 241 297 3.2E-4 T 12-10-2018 R615_00665 09d37d309670713e7937f15db37748d8 548 SUPERFAMILY SSF52172 10 143 5.98E-25 T 12-10-2018 IPR011006 CheY-like superfamily R615_00665 09d37d309670713e7937f15db37748d8 548 Gene3D G3DSA:3.40.50.2300 4 128 2.6E-22 T 12-10-2018 R615_00665 09d37d309670713e7937f15db37748d8 548 SUPERFAMILY SSF48452 271 486 9.73E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_00665 09d37d309670713e7937f15db37748d8 548 Gene3D G3DSA:1.25.40.10 129 514 5.2E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 SUPERFAMILY SSF103088 747 857 1.22E-25 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 362 413 1.3E-8 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 Gene3D G3DSA:2.60.40.740 360 474 2.8E-6 T 12-10-2018 R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 Gene3D G3DSA:3.30.1330.60 713 862 1.1E-28 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 Pfam PF01345 Domain of unknown function DUF11 360 460 6.9E-9 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 SUPERFAMILY SSF49401 358 476 1.69E-5 T 12-10-2018 IPR008966 Adhesion domain superfamily R615_12020 d76fdc42baa02132bf87a0f4821e8bbf 1924 Pfam PF00691 OmpA family 749 851 1.0E-16 T 12-10-2018 IPR006665 OmpA-like domain R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 PIRSF PIRSF000962 13 334 1.3E-75 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 Pfam PF02112 cAMP phosphodiesterases class-II 29 329 1.3E-46 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 284 295 1.8E-22 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 99 117 1.8E-22 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 255 268 1.8E-22 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 126 147 1.8E-22 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 236 247 1.8E-22 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 103 117 - T 12-10-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 Gene3D G3DSA:3.60.15.10 28 320 1.3E-15 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_15555 58b8748f6c6f1d63a36fd94e0f38f7ef 334 SUPERFAMILY SSF56281 30 296 2.88E-19 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 SMART SM00411 1 91 5.1E-40 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.2E-28 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 SUPERFAMILY SSF47729 1 91 1.41E-29 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 2 92 2.4E-46 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 Gene3D G3DSA:4.10.520.10 2 38 5.7E-6 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 Gene3D G3DSA:4.10.520.10 40 91 1.8E-27 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 28.925 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.4E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.4E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06260 a4394e9c29b0aaf12f8616fabf4c2e01 99 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.4E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_12340 6ed215565eb038e3db71cef93aaa2471 228 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 87 146 1.6E-14 T 12-10-2018 R615_12340 6ed215565eb038e3db71cef93aaa2471 228 SUPERFAMILY SSF53335 18 182 1.98E-23 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_12340 6ed215565eb038e3db71cef93aaa2471 228 Gene3D G3DSA:3.40.50.150 44 190 1.5E-22 T 12-10-2018 R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 Gene3D G3DSA:3.30.1490.300 100 159 5.2E-87 T 12-10-2018 R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 22 364 1.0E-123 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 SMART SM00842 24 191 3.2E-4 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 Pfam PF11104 Type IV pilus assembly protein PilM; 26 364 4.0E-129 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 Gene3D G3DSA:3.30.420.40 25 362 5.2E-87 T 12-10-2018 R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 SUPERFAMILY SSF53067 205 363 1.88E-26 T 12-10-2018 R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 Gene3D G3DSA:3.30.420.40 201 328 5.2E-87 T 12-10-2018 R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 PIRSF PIRSF019169 12 365 1.4E-121 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM R615_15265 87d40735d811bd2f6e98d9b897ab7b7c 365 SUPERFAMILY SSF53067 24 187 5.64E-12 T 12-10-2018 R615_15040 b43f47bcc45877ef4c8a1c0d6a45a172 231 SUPERFAMILY SSF52964 70 151 1.44E-6 T 12-10-2018 R615_15040 b43f47bcc45877ef4c8a1c0d6a45a172 231 Gene3D G3DSA:3.40.50.10610 76 230 7.6E-6 T 12-10-2018 R615_15040 b43f47bcc45877ef4c8a1c0d6a45a172 231 Pfam PF03783 Curli production assembly/transport component CsgG 51 228 7.8E-31 T 12-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 R615_01735 3d49e93427ee49751432973f414c3297 610 PIRSF PIRSF028304 1 609 1.5E-167 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like R615_01735 3d49e93427ee49751432973f414c3297 610 Pfam PF05947 Type VI secretion system, TssF 7 609 4.1E-199 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like R615_01735 3d49e93427ee49751432973f414c3297 610 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 610 1.9E-192 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like R615_04710 ae0820a84ec8469bc2863796aaf34c78 244 Pfam PF07317 Flagellar regulator YcgR 9 112 7.6E-11 T 12-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal R615_04710 ae0820a84ec8469bc2863796aaf34c78 244 Gene3D G3DSA:2.30.110.10 6 116 1.8E-14 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 R615_04710 ae0820a84ec8469bc2863796aaf34c78 244 Gene3D G3DSA:2.40.10.220 117 231 4.0E-22 T 12-10-2018 R615_04710 ae0820a84ec8469bc2863796aaf34c78 244 Pfam PF07238 PilZ domain 116 226 6.8E-9 T 12-10-2018 IPR009875 PilZ domain GO:0035438 R615_02115 e504997557ec39d0afb77f0fc07b1205 100 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 6.2E-29 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 R615_02115 e504997557ec39d0afb77f0fc07b1205 100 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 2.1E-33 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 R615_02115 e504997557ec39d0afb77f0fc07b1205 100 SUPERFAMILY SSF69754 1 98 1.31E-36 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like R615_02115 e504997557ec39d0afb77f0fc07b1205 100 Gene3D G3DSA:3.30.160.100 1 94 3.4E-37 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like R615_13920 a7a4fbf34c12fb920116761af3ca7b1a 300 Pfam PF00480 ROK family 4 295 1.8E-72 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 R615_13920 a7a4fbf34c12fb920116761af3ca7b1a 300 Gene3D G3DSA:3.30.420.40 120 286 2.3E-77 T 12-10-2018 R615_13920 a7a4fbf34c12fb920116761af3ca7b1a 300 SUPERFAMILY SSF53067 1 298 5.27E-61 T 12-10-2018 R615_13920 a7a4fbf34c12fb920116761af3ca7b1a 300 Gene3D G3DSA:3.30.420.40 5 293 2.3E-77 T 12-10-2018 R615_04200 007e2fe4c2873a31d43bfcee8723ccee 241 Pfam PF00117 Glutamine amidotransferase class-I 58 194 2.0E-11 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_04200 007e2fe4c2873a31d43bfcee8723ccee 241 SUPERFAMILY SSF52317 23 206 1.86E-37 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_04200 007e2fe4c2873a31d43bfcee8723ccee 241 Gene3D G3DSA:3.40.50.880 27 225 7.9E-42 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 1.8E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 1.8E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.8E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 1.8E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 1.8E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 SUPERFAMILY SSF47928 3 106 7.59E-25 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 19.621 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 9.9E-53 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 175 1.2E-46 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 138 157 - T 12-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17320 bbaa5d0a253e8b3c82c10fff7e7f3958 178 Gene3D G3DSA:1.10.520.20 2 107 6.0E-32 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_12630 c0979817850243d1ce83149c4e1d332f 372 PIRSF PIRSF004640 3 365 2.3E-145 T 12-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 R615_12630 c0979817850243d1ce83149c4e1d332f 372 SUPERFAMILY SSF56014 267 354 6.54E-11 T 12-10-2018 R615_12630 c0979817850243d1ce83149c4e1d332f 372 Gene3D G3DSA:3.20.20.20 2 263 1.8E-104 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_12630 c0979817850243d1ce83149c4e1d332f 372 SUPERFAMILY SSF51412 26 134 2.93E-10 T 12-10-2018 R615_12630 c0979817850243d1ce83149c4e1d332f 372 Pfam PF04551 GcpE protein 15 354 1.1E-133 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 R615_12630 c0979817850243d1ce83149c4e1d332f 372 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 11 353 1.2E-128 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 R615_12630 c0979817850243d1ce83149c4e1d332f 372 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 9 361 34.513 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 R615_12630 c0979817850243d1ce83149c4e1d332f 372 Gene3D G3DSA:3.30.413.10 264 362 1.4E-25 T 12-10-2018 R615_11515 569d0c274357a8e309c1e59b741e4a69 135 SUPERFAMILY SSF51316 1 135 7.11E-38 T 12-10-2018 IPR011057 Mss4-like superfamily R615_11515 569d0c274357a8e309c1e59b741e4a69 135 Gene3D G3DSA:3.90.1590.10 2 106 1.2E-12 T 12-10-2018 R615_11515 569d0c274357a8e309c1e59b741e4a69 135 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 117 7.9E-19 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 R615_03505 530782cd894307e929e320e3af8adf0a 678 Pfam PF02872 5'-nucleotidase, C-terminal domain 398 588 1.4E-23 T 12-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 Pfam PF00149 Calcineurin-like phosphoesterase 51 294 7.3E-11 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_03505 530782cd894307e929e320e3af8adf0a 678 Gene3D G3DSA:3.60.21.10 44 393 3.4E-116 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_03505 530782cd894307e929e320e3af8adf0a 678 ProSitePatterns PS00785 5'-nucleotidase signature 1. 51 63 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 ProSitePatterns PS00786 5'-nucleotidase signature 2. 137 148 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 PRINTS PR01607 Apyrase family signature 249 266 1.1E-28 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 PRINTS PR01607 Apyrase family signature 277 300 1.1E-28 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 PRINTS PR01607 Apyrase family signature 49 67 1.1E-28 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 PRINTS PR01607 Apyrase family signature 564 583 1.1E-28 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 PRINTS PR01607 Apyrase family signature 464 487 1.1E-28 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 PRINTS PR01607 Apyrase family signature 318 338 1.1E-28 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 SUPERFAMILY SSF56300 45 392 1.18E-73 T 12-10-2018 R615_03505 530782cd894307e929e320e3af8adf0a 678 Gene3D G3DSA:3.90.780.10 441 622 9.4E-56 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_03505 530782cd894307e929e320e3af8adf0a 678 SUPERFAMILY SSF55816 395 634 3.27E-41 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Gene3D G3DSA:3.30.450.20 247 366 1.2E-23 T 12-10-2018 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Gene3D G3DSA:3.30.450.20 129 241 2.2E-9 T 12-10-2018 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Gene3D G3DSA:3.20.20.450 549 800 1.3E-97 T 12-10-2018 IPR035919 EAL domain superfamily R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00086 203 245 9.5 T 12-10-2018 IPR001610 PAC motif R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00086 324 366 0.17 T 12-10-2018 IPR001610 PAC motif R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Pfam PF00990 Diguanylate cyclase, GGDEF domain 377 534 8.0E-47 T 12-10-2018 IPR000160 GGDEF domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SUPERFAMILY SSF55073 382 539 7.72E-48 T 12-10-2018 IPR029787 Nucleotide cyclase R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Gene3D G3DSA:3.30.70.270 367 541 2.8E-55 T 12-10-2018 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SUPERFAMILY SSF141868 553 800 3.53E-88 T 12-10-2018 IPR035919 EAL domain superfamily R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Gene3D G3DSA:3.40.50.2300 1 128 4.0E-27 T 12-10-2018 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SUPERFAMILY SSF55785 122 242 9.6E-8 T 12-10-2018 IPR035965 PAS domain superfamily R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 373 3.7E-15 T 12-10-2018 IPR000014 PAS domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SUPERFAMILY SSF55785 264 374 5.8E-19 T 12-10-2018 IPR035965 PAS domain superfamily R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00091 134 201 3.5 T 12-10-2018 IPR000014 PAS domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00091 253 320 2.4E-7 T 12-10-2018 IPR000014 PAS domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 373 536 2.1E-45 T 12-10-2018 IPR000160 GGDEF domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00052 548 793 5.2E-111 T 12-10-2018 IPR001633 EAL domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SUPERFAMILY SSF52172 1 148 1.29E-29 T 12-10-2018 IPR011006 CheY-like superfamily R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Pfam PF00563 EAL domain 554 787 5.6E-77 T 12-10-2018 IPR001633 EAL domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Pfam PF00072 Response regulator receiver domain 6 116 2.8E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00267 366 538 1.7E-66 T 12-10-2018 IPR000160 GGDEF domain R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 SMART SM00448 4 116 2.8E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07800 48829345e5efd6d295833bd9f47ab2c0 805 Pfam PF13426 PAS domain 264 365 7.2E-12 T 12-10-2018 IPR000014 PAS domain R615_03765 8a8183e042991ac1e9f97c2f342c3bb7 263 PIRSF PIRSF004846 1 256 1.4E-51 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 R615_03765 8a8183e042991ac1e9f97c2f342c3bb7 263 Pfam PF13531 Bacterial extracellular solute-binding protein 28 252 2.4E-41 T 12-10-2018 R615_03765 8a8183e042991ac1e9f97c2f342c3bb7 263 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 33 251 5.5E-63 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 R615_03765 8a8183e042991ac1e9f97c2f342c3bb7 263 SUPERFAMILY SSF53850 27 252 1.09E-55 T 12-10-2018 R615_03765 8a8183e042991ac1e9f97c2f342c3bb7 263 Gene3D G3DSA:3.40.190.10 32 252 3.0E-75 T 12-10-2018 R615_03765 8a8183e042991ac1e9f97c2f342c3bb7 263 Gene3D G3DSA:3.40.190.10 107 214 3.0E-75 T 12-10-2018 R615_06055 afb357cde02e5dbaf3cef30d55d5135d 454 Pfam PF11902 Protein of unknown function (DUF3422) 27 437 1.9E-155 T 12-10-2018 IPR021830 Protein of unknown function DUF3422 R615_09375 db2599324e6e5300bf60940df9887596 223 Gene3D G3DSA:1.20.120.530 73 213 7.5E-33 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal R615_09375 db2599324e6e5300bf60940df9887596 223 Gene3D G3DSA:1.10.10.10 5 71 6.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_09375 db2599324e6e5300bf60940df9887596 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 70 3.9E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_09375 db2599324e6e5300bf60940df9887596 223 SMART SM00345 12 70 5.7E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_09375 db2599324e6e5300bf60940df9887596 223 SUPERFAMILY SSF48008 76 212 6.02E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal R615_09375 db2599324e6e5300bf60940df9887596 223 Pfam PF07729 FCD domain 80 206 7.5E-27 T 12-10-2018 IPR011711 GntR, C-terminal R615_09375 db2599324e6e5300bf60940df9887596 223 SMART SM00895 80 207 6.5E-26 T 12-10-2018 IPR011711 GntR, C-terminal R615_09375 db2599324e6e5300bf60940df9887596 223 SUPERFAMILY SSF46785 7 99 6.71E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 Gene3D G3DSA:1.10.1660.10 1 126 1.2E-32 T 12-10-2018 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.8E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.8E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.8E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 Pfam PF00376 MerR family regulatory protein 2 39 5.6E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 Pfam PF09278 MerR, DNA binding 44 106 1.1E-18 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 1.5E-50 T 12-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 SMART SM00422 1 70 8.0E-28 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09105 d66bd4edd4fe8d562b7d4151124b7a99 135 SUPERFAMILY SSF46955 1 125 1.39E-34 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_06270 edca10fcff4560467e04fe91f95976a5 237 SMART SM00934 12 232 3.8E-94 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_06270 edca10fcff4560467e04fe91f95976a5 237 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 11 232 8.7E-51 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_06270 edca10fcff4560467e04fe91f95976a5 237 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 14 232 6.8E-60 T 12-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_06270 edca10fcff4560467e04fe91f95976a5 237 Gene3D G3DSA:3.20.20.70 1 237 1.1E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_06270 edca10fcff4560467e04fe91f95976a5 237 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 64 77 - T 12-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_06270 edca10fcff4560467e04fe91f95976a5 237 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 10 237 39.148 T 12-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_06270 edca10fcff4560467e04fe91f95976a5 237 SUPERFAMILY SSF51366 9 234 1.95E-75 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 SUPERFAMILY SSF46785 10 92 6.13E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_02420 0043c7dac25a3d1c08edc073788968c4 304 Gene3D G3DSA:3.40.190.10 168 270 2.4E-35 T 12-10-2018 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 Pfam PF03466 LysR substrate binding domain 97 298 5.5E-25 T 12-10-2018 IPR005119 LysR, substrate-binding R615_02420 0043c7dac25a3d1c08edc073788968c4 304 Gene3D G3DSA:1.10.10.10 12 101 3.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_02420 0043c7dac25a3d1c08edc073788968c4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 4.1E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 4.1E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 4.1E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 Gene3D G3DSA:3.40.190.10 109 297 2.4E-35 T 12-10-2018 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 1.3E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_02420 0043c7dac25a3d1c08edc073788968c4 304 SUPERFAMILY SSF53850 99 302 3.57E-29 T 12-10-2018 R615_04450 d2eed9235c1c8445a2bb29366e10e078 185 Pfam PF00027 Cyclic nucleotide-binding domain 23 103 2.6E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_04450 d2eed9235c1c8445a2bb29366e10e078 185 Gene3D G3DSA:2.60.120.10 7 136 1.9E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_04450 d2eed9235c1c8445a2bb29366e10e078 185 SUPERFAMILY SSF51206 15 136 8.51E-20 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_04450 d2eed9235c1c8445a2bb29366e10e078 185 SMART SM00100 3 125 3.1E-4 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_08245 0e309d8cf8c68f8ba2d75dbdd7cf82e9 75 Pfam PF03966 Trm112p-like protein 2 41 4.5E-10 T 12-10-2018 IPR005651 Trm112-like R615_08245 0e309d8cf8c68f8ba2d75dbdd7cf82e9 75 Gene3D G3DSA:2.20.25.10 8 69 3.6E-24 T 12-10-2018 R615_08245 0e309d8cf8c68f8ba2d75dbdd7cf82e9 75 SUPERFAMILY SSF158997 1 55 3.27E-19 T 12-10-2018 R615_08245 0e309d8cf8c68f8ba2d75dbdd7cf82e9 75 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 26.435 T 12-10-2018 IPR038053 Uncharacterised protein family UPF0434 R615_11595 a73e12910e857f7edd9db5276fc31d03 170 Gene3D G3DSA:1.20.950.20 1 157 5.5E-11 T 12-10-2018 R615_11595 a73e12910e857f7edd9db5276fc31d03 170 Pfam PF01292 Prokaryotic cytochrome b561 8 169 1.2E-20 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 R615_11595 a73e12910e857f7edd9db5276fc31d03 170 SUPERFAMILY SSF81342 5 168 2.35E-30 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 R615_11945 e3ae2cecabbfbe3145ab5a572a14bd95 287 Pfam PF11231 Protein of unknown function (DUF3034) 35 282 5.5E-99 T 12-10-2018 IPR021393 Protein of unknown function DUF3034 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 Gene3D G3DSA:1.10.150.380 297 415 3.2E-32 T 12-10-2018 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 Pfam PF02934 GatB/GatE catalytic domain 5 289 7.3E-109 T 12-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 SUPERFAMILY SSF55931 4 296 2.03E-116 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 SUPERFAMILY SSF89095 297 401 4.19E-33 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 Gene3D G3DSA:1.10.10.410 416 481 3.8E-13 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 479 5.5E-158 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 144 158 - T 12-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 SMART SM00845 328 479 3.8E-59 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 Pfam PF02637 GatB domain 328 479 1.1E-39 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 R615_02040 e17cedab319db6a697ca1ffabcaed78f 483 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 480 36.202 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 R615_04830 65f25310c7b0be596b96742f1e0f4449 35 Gene3D G3DSA:3.40.50.720 1 35 8.1E-8 T 12-10-2018 R615_04830 65f25310c7b0be596b96742f1e0f4449 35 SUPERFAMILY SSF51735 1 34 3.38E-8 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04830 65f25310c7b0be596b96742f1e0f4449 35 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 33 3.1E-6 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_13155 0313d465705824efbe2672c6197820cd 133 Gene3D G3DSA:3.30.160.100 1 111 2.0E-12 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like R615_13155 0313d465705824efbe2672c6197820cd 133 SUPERFAMILY SSF69754 1 94 5.76E-17 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like R615_13155 0313d465705824efbe2672c6197820cd 133 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 99 2.0E-12 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 Pfam PF13365 Trypsin-like peptidase domain 87 220 8.9E-36 T 12-10-2018 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 Gene3D G3DSA:2.30.42.10 372 461 1.0E-12 T 12-10-2018 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 Gene3D G3DSA:2.40.10.120 24 252 3.7E-85 T 12-10-2018 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 PRINTS PR00834 HtrA/DegQ protease family signature 299 311 3.8E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 PRINTS PR00834 HtrA/DegQ protease family signature 117 137 3.8E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 PRINTS PR00834 HtrA/DegQ protease family signature 191 208 3.8E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 PRINTS PR00834 HtrA/DegQ protease family signature 213 230 3.8E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 PRINTS PR00834 HtrA/DegQ protease family signature 96 108 3.8E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 PRINTS PR00834 HtrA/DegQ protease family signature 157 181 3.8E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 SUPERFAMILY SSF50156 373 459 4.47E-11 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 SUPERFAMILY SSF50494 24 251 1.2E-69 T 12-10-2018 IPR009003 Peptidase S1, PA clan R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 SUPERFAMILY SSF50156 217 342 4.73E-24 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 Pfam PF13180 PDZ domain 374 451 6.5E-8 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 Pfam PF13180 PDZ domain 260 349 3.0E-16 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 SMART SM00228 373 450 1.9E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 SMART SM00228 259 341 9.5E-13 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 25 455 9.5E-157 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 R615_12785 e8bc47105010b8f55cbb7e6593f56b18 461 Gene3D G3DSA:2.30.42.10 254 355 9.0E-28 T 12-10-2018 R615_07555 f8a0152d3dac3a1e91002728cd287994 563 Pfam PF17149 Periplasmic sensor domain found in signal transduction proteins 11 116 2.8E-17 T 12-10-2018 IPR033414 Periplasmic sensor domain R615_07555 f8a0152d3dac3a1e91002728cd287994 563 SUPERFAMILY SSF55785 201 326 1.82E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_07555 f8a0152d3dac3a1e91002728cd287994 563 Gene3D G3DSA:3.30.450.20 200 332 2.0E-6 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF55073 962 1123 6.28E-49 T 12-10-2018 IPR029787 Nucleotide cyclase R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF55785 842 954 1.57E-18 T 12-10-2018 IPR035965 PAS domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.30.450.20 557 684 2.1E-18 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00052 1132 1379 8.4E-121 T 12-10-2018 IPR001633 EAL domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00091 831 898 1.0E-7 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00091 698 764 5.7E-6 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00091 564 635 0.56 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00091 309 376 1.0E-6 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.30.450.20 297 425 7.1E-16 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.30.450.20 687 830 2.8E-21 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.30.450.20 426 556 1.9E-7 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF141868 1137 1383 2.88E-92 T 12-10-2018 IPR035919 EAL domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Pfam PF00990 Diguanylate cyclase, GGDEF domain 957 1118 3.7E-48 T 12-10-2018 IPR000160 GGDEF domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 954 1121 3.1E-44 T 12-10-2018 IPR000160 GGDEF domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.30.450.20 831 955 1.3E-24 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF55785 300 420 1.06E-13 T 12-10-2018 IPR035965 PAS domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.20.20.450 1136 1388 1.1E-102 T 12-10-2018 IPR035919 EAL domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Pfam PF00989 PAS fold 312 419 1.5E-10 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Pfam PF00989 PAS fold 699 820 4.1E-8 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF55785 549 684 5.41E-18 T 12-10-2018 IPR035965 PAS domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Pfam PF00563 EAL domain 1138 1374 2.2E-75 T 12-10-2018 IPR001633 EAL domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Pfam PF13426 PAS domain 842 945 2.8E-9 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00267 946 1122 1.1E-63 T 12-10-2018 IPR000160 GGDEF domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF55785 683 821 2.65E-17 T 12-10-2018 IPR035965 PAS domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SUPERFAMILY SSF55785 419 543 5.14E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Pfam PF08447 PAS fold 594 680 9.5E-10 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 Gene3D G3DSA:3.30.70.270 956 1135 2.6E-63 T 12-10-2018 R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 835 952 9.7E-16 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 560 692 1.0E-12 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 695 830 4.2E-18 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 313 429 3.3E-11 T 12-10-2018 IPR000014 PAS domain R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00086 781 823 0.012 T 12-10-2018 IPR001610 PAC motif R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00086 513 555 23.0 T 12-10-2018 IPR001610 PAC motif R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00086 381 422 78.0 T 12-10-2018 IPR001610 PAC motif R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00086 904 946 0.015 T 12-10-2018 IPR001610 PAC motif R615_14740 f6744adaffc6f448bd7dadca5baca9c8 1393 SMART SM00086 643 686 3.9E-5 T 12-10-2018 IPR001610 PAC motif R615_08680 385370f119ad8006185ee2c7892a1ada 429 PIRSF PIRSF001529 1 428 2.8E-167 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 SUPERFAMILY SSF55681 117 420 1.21E-94 T 12-10-2018 R615_08680 385370f119ad8006185ee2c7892a1ada 429 Gene3D G3DSA:1.10.287.40 1 105 2.9E-20 T 12-10-2018 R615_08680 385370f119ad8006185ee2c7892a1ada 429 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 1.6E-31 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 1.6E-31 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 1.6E-31 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 1.6E-31 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 1.6E-31 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 224 402 1.5E-32 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_08680 385370f119ad8006185ee2c7892a1ada 429 Gene3D G3DSA:3.30.930.10 106 429 2.8E-108 T 12-10-2018 R615_08680 385370f119ad8006185ee2c7892a1ada 429 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 7.3E-23 T 12-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 R615_08680 385370f119ad8006185ee2c7892a1ada 429 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 38.42 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 1.2E-156 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 R615_08680 385370f119ad8006185ee2c7892a1ada 429 SUPERFAMILY SSF46589 1 113 3.98E-22 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 Gene3D G3DSA:3.40.366.10 7 285 2.7E-87 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 6 290 1.5E-100 T 12-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 Pfam PF00698 Acyl transferase domain 8 279 2.4E-29 T 12-10-2018 IPR014043 Acyl transferase R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 SUPERFAMILY SSF55048 129 198 2.49E-17 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 PIRSF PIRSF000446 1 310 5.3E-102 T 12-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 309 1.8E-23 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 SUPERFAMILY SSF52151 7 305 3.92E-64 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase R615_09310 647b6dbb244decf460ce04fa7c1eb592 312 Gene3D G3DSA:3.30.70.250 126 198 2.7E-87 T 12-10-2018 R615_06630 a9d707790e4abcd8fe5ac76582922518 425 Pfam PF13439 Glycosyltransferase Family 4 28 199 1.1E-19 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 R615_06630 a9d707790e4abcd8fe5ac76582922518 425 Gene3D G3DSA:3.40.50.2000 8 205 5.3E-28 T 12-10-2018 R615_06630 a9d707790e4abcd8fe5ac76582922518 425 SUPERFAMILY SSF53756 11 399 9.42E-57 T 12-10-2018 R615_06630 a9d707790e4abcd8fe5ac76582922518 425 Gene3D G3DSA:3.40.50.2000 206 380 3.2E-25 T 12-10-2018 R615_06630 a9d707790e4abcd8fe5ac76582922518 425 Pfam PF13692 Glycosyl transferases group 1 225 366 1.6E-14 T 12-10-2018 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SUPERFAMILY SSF52540 526 782 9.58E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SMART SM00487 599 789 1.0E-36 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SMART SM00490 825 909 5.4E-18 T 12-10-2018 IPR001650 Helicase, C-terminal R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SMART SM01058 478 575 3.5E-48 T 12-10-2018 IPR003711 CarD-like/TRCF domain R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:3.40.50.300 477 988 3.3E-235 T 12-10-2018 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:3.40.50.11180 24 334 1.3E-113 T 12-10-2018 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SUPERFAMILY SSF143517 994 1145 6.8E-37 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SMART SM00982 1007 1107 1.3E-40 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:2.30.30.840 482 540 3.3E-235 T 12-10-2018 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Pfam PF00270 DEAD/DEAH box helicase 604 764 2.8E-19 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SUPERFAMILY SSF52540 781 989 2.27E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SUPERFAMILY SSF52540 12 340 1.13E-97 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:3.40.50.300 541 780 3.3E-235 T 12-10-2018 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:3.30.2060.10 129 214 1.3E-113 T 12-10-2018 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 149 1080 0.0 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SUPERFAMILY SSF141259 470 547 4.71E-23 T 12-10-2018 IPR036101 CarD-like/TRCF domain superfamily R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 26 1111 27.793 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 SUPERFAMILY SSF52540 351 464 3.29E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Pfam PF00271 Helicase conserved C-terminal domain 805 908 6.0E-17 T 12-10-2018 IPR001650 Helicase, C-terminal R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Pfam PF02559 CarD-like/TRCF domain 479 574 2.2E-24 T 12-10-2018 IPR003711 CarD-like/TRCF domain R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:3.90.1150.50 1004 1149 1.2E-36 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Pfam PF03461 TRCF domain 1010 1099 6.0E-24 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 R615_07260 f55b59eed138e60cd15293ba62b57266 1150 Gene3D G3DSA:3.40.50.11140 355 452 1.2E-19 T 12-10-2018 R615_03945 7d9400f24effc520c35b92e740292cdc 378 SUPERFAMILY SSF49493 114 267 4.19E-22 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 R615_03945 7d9400f24effc520c35b92e740292cdc 378 Pfam PF00226 DnaJ domain 5 67 1.7E-25 T 12-10-2018 IPR001623 DnaJ domain R615_03945 7d9400f24effc520c35b92e740292cdc 378 Pfam PF01556 DnaJ C terminal domain 121 333 5.0E-45 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal R615_03945 7d9400f24effc520c35b92e740292cdc 378 SMART SM00271 4 62 6.9E-28 T 12-10-2018 IPR001623 DnaJ domain R615_03945 7d9400f24effc520c35b92e740292cdc 378 SUPERFAMILY SSF49493 259 344 7.46E-23 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 R615_03945 7d9400f24effc520c35b92e740292cdc 378 Gene3D G3DSA:2.10.230.10 147 211 2.0E-21 T 12-10-2018 R615_03945 7d9400f24effc520c35b92e740292cdc 378 Gene3D G3DSA:1.10.287.110 1 113 1.6E-35 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_03945 7d9400f24effc520c35b92e740292cdc 378 Gene3D G3DSA:2.60.260.20 254 333 1.3E-29 T 12-10-2018 R615_03945 7d9400f24effc520c35b92e740292cdc 378 SUPERFAMILY SSF57938 134 210 6.28E-23 T 12-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily R615_03945 7d9400f24effc520c35b92e740292cdc 378 Pfam PF00684 DnaJ central domain 147 207 2.7E-14 T 12-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 R615_03945 7d9400f24effc520c35b92e740292cdc 378 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 349 4.8E-138 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 R615_03945 7d9400f24effc520c35b92e740292cdc 378 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 374 42.111 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 R615_03945 7d9400f24effc520c35b92e740292cdc 378 PRINTS PR00625 DnaJ domain signature 42 62 4.1E-31 T 12-10-2018 IPR001623 DnaJ domain R615_03945 7d9400f24effc520c35b92e740292cdc 378 PRINTS PR00625 DnaJ domain signature 62 81 4.1E-31 T 12-10-2018 IPR001623 DnaJ domain R615_03945 7d9400f24effc520c35b92e740292cdc 378 PRINTS PR00625 DnaJ domain signature 7 25 4.1E-31 T 12-10-2018 IPR001623 DnaJ domain R615_03945 7d9400f24effc520c35b92e740292cdc 378 PRINTS PR00625 DnaJ domain signature 25 40 4.1E-31 T 12-10-2018 IPR001623 DnaJ domain R615_03945 7d9400f24effc520c35b92e740292cdc 378 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 12-10-2018 IPR018253 DnaJ domain, conserved site R615_03945 7d9400f24effc520c35b92e740292cdc 378 SUPERFAMILY SSF46565 1 110 1.31E-35 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 Pfam PF03486 HI0933-like protein 6 396 9.1E-145 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 Gene3D G3DSA:1.10.8.260 266 326 7.4E-130 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 395 9.4E-125 T 12-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 351 373 8.7E-7 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 8.7E-7 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 8.7E-7 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 Gene3D G3DSA:2.40.30.10 193 343 7.4E-130 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 SUPERFAMILY SSF160996 195 342 4.05E-37 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 SUPERFAMILY SSF51905 3 398 1.22E-60 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 Gene3D G3DSA:3.50.50.60 8 392 7.4E-130 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 169 5.8E-9 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.8E-9 T 12-10-2018 R615_05540 1632a2fd68fc9d844c2757203d989f5d 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 366 373 5.8E-9 T 12-10-2018 R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.5E-18 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.5E-18 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.5E-18 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 106 1.9E-22 T 12-10-2018 IPR022569 Ferredoxin, C-terminal R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 Pfam PF00037 4Fe-4S binding domain 34 55 4.2E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 SUPERFAMILY SSF54862 3 95 6.9E-23 T 12-10-2018 R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 Gene3D G3DSA:3.30.70.20 2 102 2.2E-31 T 12-10-2018 R615_14715 dedb928cf144a3f18c1473eef412c5e0 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_04245 994c6a946a03544df87ad5e1395c8d28 348 Pfam PF00795 Carbon-nitrogen hydrolase 15 268 3.4E-48 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 R615_04245 994c6a946a03544df87ad5e1395c8d28 348 Hamap MF_01242 Aliphatic amidase [amiE]. 1 340 84.406 T 12-10-2018 IPR023719 Aliphatic amidase GO:0004040 KEGG: 00330+3.5.1.4|KEGG: 00360+3.5.1.4|KEGG: 00380+3.5.1.4|KEGG: 00627+3.5.1.4|KEGG: 00643+3.5.1.4|MetaCyc: PWY-3161|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 R615_04245 994c6a946a03544df87ad5e1395c8d28 348 SUPERFAMILY SSF56317 11 275 7.85E-53 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_04245 994c6a946a03544df87ad5e1395c8d28 348 Gene3D G3DSA:3.60.110.10 1 348 5.0E-153 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 24 125 6.93E-13 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 653 727 1.16E-8 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 283 355 1.26E-10 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Gene3D G3DSA:4.10.1080.10 652 729 6.2E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Gene3D G3DSA:4.10.1080.10 172 278 9.8E-11 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Gene3D G3DSA:4.10.1080.10 58 171 2.1E-15 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Gene3D G3DSA:4.10.1080.10 582 651 2.8E-7 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Gene3D G3DSA:4.10.1080.10 279 376 2.7E-10 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Gene3D G3DSA:4.10.1080.10 468 581 1.2E-11 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 548 570 0.012 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 212 240 0.0059 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 473 494 0.015 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 173 196 0.0054 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 63 88 0.0022 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 437 466 0.0028 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 398 420 0.016 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 288 316 0.014 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 97 121 0.0086 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 623 645 0.0061 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 Pfam PF02412 Thrombospondin type 3 repeat 137 169 0.002 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 472 572 1.7E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 204 280 3.92E-10 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 357 468 5.43E-14 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 128 206 2.22E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_14060 accb0f9e67526eba95a3c32a0d797d94 823 SUPERFAMILY SSF103647 583 654 3.92E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_06780 ba3793e1719a187d31c2e276655ccd11 128 Pfam PF14552 Tautomerase enzyme 36 112 2.5E-22 T 12-10-2018 IPR037479 Tautomerase, MSAD family R615_06780 ba3793e1719a187d31c2e276655ccd11 128 SUPERFAMILY SSF55331 1 118 2.1E-31 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily R615_06780 ba3793e1719a187d31c2e276655ccd11 128 Gene3D G3DSA:3.30.429.10 1 128 2.1E-38 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily R615_05165 6d315b578009e204a683dcadb33c35f1 101 SUPERFAMILY SSF52091 9 100 3.14E-21 T 12-10-2018 IPR036513 STAS domain superfamily R615_05165 6d315b578009e204a683dcadb33c35f1 101 Pfam PF13466 STAS domain 16 94 1.3E-10 T 12-10-2018 IPR002645 STAS domain R615_05165 6d315b578009e204a683dcadb33c35f1 101 Gene3D G3DSA:3.30.750.24 3 101 5.3E-19 T 12-10-2018 IPR036513 STAS domain superfamily R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 178 371 2.3E-63 T 12-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 Gene3D G3DSA:3.40.250.10 400 486 7.6E-6 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 SUPERFAMILY SSF52821 412 479 5.5E-5 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 SUPERFAMILY SSF52402 177 375 3.75E-37 T 12-10-2018 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 SMART SM00981 77 168 7.2E-19 T 12-10-2018 IPR004114 THUMP domain GO:0003723 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 386 483 9.2E-29 T 12-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 Gene3D G3DSA:3.30.2130.30 1 177 1.3E-29 T 12-10-2018 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 Pfam PF02926 THUMP domain 58 166 8.9E-17 T 12-10-2018 IPR004114 THUMP domain GO:0003723 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 5 372 9.5E-101 T 12-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 Gene3D G3DSA:3.40.50.620 178 387 8.6E-47 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 SUPERFAMILY SSF143437 2 176 1.34E-38 T 12-10-2018 R615_09180 ae61e63a745e9ecc085da89aa3097a12 493 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 493 162.139 T 12-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 R615_04740 6345e6a4a84d8eb2a9051f5bc15c72f4 135 Pfam PF00460 Flagella basal body rod protein 12 40 5.3E-11 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 R615_04740 6345e6a4a84d8eb2a9051f5bc15c72f4 135 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 133 1.3E-38 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 R615_04740 6345e6a4a84d8eb2a9051f5bc15c72f4 135 PIRSF PIRSF002889 1 135 4.5E-45 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 R615_04740 6345e6a4a84d8eb2a9051f5bc15c72f4 135 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 16 36 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.8E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.8E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.8E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 PIRSF PIRSF001467 1 164 1.3E-28 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 Gene3D G3DSA:2.40.100.10 1 163 2.4E-66 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 161 9.9E-47 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 SUPERFAMILY SSF50891 2 163 4.53E-57 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_08265 24e3c3e6fc8b93bb61b99d91b8b3583f 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 Gene3D G3DSA:3.30.70.660 111 248 9.6E-49 T 12-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 PIRSF PIRSF001430 4 260 3.4E-75 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 Gene3D G3DSA:3.30.70.580 2 110 1.3E-34 T 12-10-2018 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 5 249 34.516 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 SUPERFAMILY SSF55120 3 260 2.73E-86 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 6 243 1.3E-68 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 Pfam PF01416 tRNA pseudouridine synthase 148 250 4.2E-30 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09855 dbc58026f47fb6f492bc9bd7d52ef8a2 274 Pfam PF01416 tRNA pseudouridine synthase 9 108 1.1E-9 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_03275 f6c194f33abef7bc453615da2e94dfd8 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 83 2.6E-25 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03275 f6c194f33abef7bc453615da2e94dfd8 88 Gene3D G3DSA:1.20.58.110 1 86 2.6E-25 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03275 f6c194f33abef7bc453615da2e94dfd8 88 Pfam PF01649 Ribosomal protein S20 2 83 1.0E-23 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03275 f6c194f33abef7bc453615da2e94dfd8 88 SUPERFAMILY SSF46992 3 86 8.5E-28 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03275 f6c194f33abef7bc453615da2e94dfd8 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 15.991 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03275 f6c194f33abef7bc453615da2e94dfd8 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 21 87 7.0E-15 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 SMART SM00342 252 334 6.3E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 318 5.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 318 334 5.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 Gene3D G3DSA:1.10.10.60 231 341 2.0E-23 T 12-10-2018 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 Pfam PF12833 Helix-turn-helix domain 259 336 1.8E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 SUPERFAMILY SSF46689 287 338 5.02E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 25 208 7.2E-36 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_12330 6e136c5d5a3aee0ae88678a434435fb3 349 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 288 330 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 SUPERFAMILY SSF47240 1 154 7.0E-45 T 12-10-2018 IPR009078 Ferritin-like superfamily R615_12460 399e4918ae4247fdc62063ffc37f8102 154 Gene3D G3DSA:1.20.1260.10 1 154 2.3E-59 T 12-10-2018 IPR012347 Ferritin-like R615_12460 399e4918ae4247fdc62063ffc37f8102 154 Pfam PF00210 Ferritin-like domain 10 142 1.8E-30 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PIRSF PIRSF002560 1 154 4.5E-63 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 65 85 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 86 106 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 107 127 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.7E-58 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_12460 399e4918ae4247fdc62063ffc37f8102 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 9.0E-65 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 R615_13680 6802c3654206f1fc931758f9d0f8ece0 343 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 49 318 3.1E-57 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 R615_13680 6802c3654206f1fc931758f9d0f8ece0 343 PIRSF PIRSF039012 2 326 1.8E-84 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 R615_13680 6802c3654206f1fc931758f9d0f8ece0 343 SUPERFAMILY SSF53187 22 320 5.29E-73 T 12-10-2018 R615_13680 6802c3654206f1fc931758f9d0f8ece0 343 Gene3D G3DSA:3.40.630.10 19 321 7.2E-89 T 12-10-2018 R615_14695 4169505ec3c838c45fda182262222148 366 Gene3D G3DSA:2.40.30.170 53 287 2.9E-47 T 12-10-2018 R615_14695 4169505ec3c838c45fda182262222148 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 364 1.2E-50 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_14695 4169505ec3c838c45fda182262222148 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 70 255 1.5E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_14695 4169505ec3c838c45fda182262222148 366 Gene3D G3DSA:2.40.420.20 51 362 2.9E-47 T 12-10-2018 R615_14695 4169505ec3c838c45fda182262222148 366 Gene3D G3DSA:2.40.50.100 68 214 2.9E-47 T 12-10-2018 R615_14695 4169505ec3c838c45fda182262222148 366 Gene3D G3DSA:1.10.287.470 102 174 2.9E-47 T 12-10-2018 R615_14695 4169505ec3c838c45fda182262222148 366 SUPERFAMILY SSF111369 60 284 1.29E-12 T 12-10-2018 R615_08310 1c353dc93a50cd9afe4cd5e5a887e44f 283 SUPERFAMILY SSF54001 85 264 1.26E-38 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_08310 1c353dc93a50cd9afe4cd5e5a887e44f 283 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 4 81 3.2E-20 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal R615_08310 1c353dc93a50cd9afe4cd5e5a887e44f 283 Gene3D G3DSA:3.10.620.30 101 272 1.7E-30 T 12-10-2018 R615_08310 1c353dc93a50cd9afe4cd5e5a887e44f 283 Pfam PF01841 Transglutaminase-like superfamily 145 237 4.0E-20 T 12-10-2018 IPR002931 Transglutaminase-like R615_08310 1c353dc93a50cd9afe4cd5e5a887e44f 283 SMART SM00460 174 239 1.9E-20 T 12-10-2018 IPR002931 Transglutaminase-like R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Pfam PF11898 Domain of unknown function (DUF3418) 716 1297 2.6E-170 T 12-10-2018 IPR024590 RNA helicase HrpA, C-terminal R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Gene3D G3DSA:3.40.50.300 256 430 1.9E-54 T 12-10-2018 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Gene3D G3DSA:3.40.50.300 29 255 2.5E-78 T 12-10-2018 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Gene3D G3DSA:1.20.120.1080 458 553 1.4E-17 T 12-10-2018 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 SMART SM00382 95 393 1.4E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 SMART SM00487 78 262 4.1E-26 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 SUPERFAMILY SSF52540 81 591 1.3E-100 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 626 700 2.8E-18 T 12-10-2018 IPR011709 Domain of unknown function DUF1605 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 9 1297 0.0 T 12-10-2018 IPR010222 RNA helicase HrpA GO:0004004 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 SMART SM00490 313 413 1.4E-13 T 12-10-2018 IPR001650 Helicase, C-terminal R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Pfam PF00271 Helicase conserved C-terminal domain 291 412 2.9E-11 T 12-10-2018 IPR001650 Helicase, C-terminal R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Pfam PF00270 DEAD/DEAH box helicase 90 236 6.5E-6 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 SMART SM00847 473 563 4.3E-32 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 R615_09495 f8e4b98c8a86e965f893c01d3faf4ea3 1303 Pfam PF04408 Helicase associated domain (HA2) 476 559 1.0E-17 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 SUPERFAMILY SSF47203 288 455 9.67E-37 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Gene3D G3DSA:1.20.140.10 288 452 1.3E-38 T 12-10-2018 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 7 33 7.6E-9 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Gene3D G3DSA:2.40.110.10 159 287 7.5E-24 T 12-10-2018 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 155 5.7E-11 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 268 1.4E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 447 4.6E-18 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 SUPERFAMILY SSF56645 39 279 1.96E-48 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Gene3D G3DSA:1.10.540.10 6 156 4.1E-13 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_12600 3e9cdad3f89a96d477602e652b1b3345 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 463 592 1.8E-27 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 Pfam PF00460 Flagella basal body rod protein 5 34 1.6E-5 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 345 1.1E-68 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 7.7E-20 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 7.7E-20 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 PRINTS PR01005 Flagellar hook-associated protein signature 421 438 7.7E-20 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 7.7E-20 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 7.7E-20 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 7.7E-20 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 947 990 8.1E-7 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 SUPERFAMILY SSF64518 587 993 1.7E-17 T 12-10-2018 R615_04795 83a3c1bf0f2c6823fd2e93ad736d044a 993 SUPERFAMILY SSF64518 125 449 5.62E-21 T 12-10-2018 R615_05710 66643ffce955027f4c54430ff5184e33 221 Gene3D G3DSA:3.30.420.10 12 218 1.6E-50 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_05710 66643ffce955027f4c54430ff5184e33 221 Hamap MF_00157 Ribonuclease T [rnt]. 1 221 101.346 T 12-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 R615_05710 66643ffce955027f4c54430ff5184e33 221 SMART SM00479 21 206 2.2E-24 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_05710 66643ffce955027f4c54430ff5184e33 221 SUPERFAMILY SSF53098 12 210 1.57E-53 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_05710 66643ffce955027f4c54430ff5184e33 221 TIGRFAM TIGR01298 RNaseT: ribonuclease T 13 211 1.3E-94 T 12-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 R615_05710 66643ffce955027f4c54430ff5184e33 221 Pfam PF00929 Exonuclease 23 197 3.6E-30 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 Gene3D G3DSA:3.40.50.720 1 180 1.7E-35 T 12-10-2018 R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 Pfam PF00106 short chain dehydrogenase 5 173 4.3E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 SUPERFAMILY SSF51735 2 172 2.75E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.2E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.2E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.2E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06760 f069c7b4634d5f2bf7be2d90e76b7798 191 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 173 0.0089 T 12-10-2018 R615_10025 6a11961742a820679b65afed913673ed 426 PIRSF PIRSF001369 39 426 2.1E-172 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type R615_10025 6a11961742a820679b65afed913673ed 426 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 R615_10025 6a11961742a820679b65afed913673ed 426 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 423 1.5E-234 T 12-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 R615_10025 6a11961742a820679b65afed913673ed 426 PRINTS PR00143 Citrate synthase signature 166 179 2.7E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 PRINTS PR00143 Citrate synthase signature 361 377 2.7E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 PRINTS PR00143 Citrate synthase signature 381 395 2.7E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 PRINTS PR00143 Citrate synthase signature 242 270 2.7E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 PRINTS PR00143 Citrate synthase signature 297 317 2.7E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 PRINTS PR00143 Citrate synthase signature 220 235 2.7E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 Gene3D G3DSA:1.10.230.10 269 378 4.8E-146 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain R615_10025 6a11961742a820679b65afed913673ed 426 Gene3D G3DSA:2.20.28.60 1 51 3.2E-22 T 12-10-2018 R615_10025 6a11961742a820679b65afed913673ed 426 SUPERFAMILY SSF48256 16 424 2.75E-165 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 Pfam PF00285 Citrate synthase, C-terminal domain 48 412 8.1E-135 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_10025 6a11961742a820679b65afed913673ed 426 Gene3D G3DSA:1.10.580.10 58 412 4.8E-146 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00145 Argininosuccinate lyase family signature 316 335 3.7E-69 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00145 Argininosuccinate lyase family signature 199 215 3.7E-69 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00145 Argininosuccinate lyase family signature 107 129 3.7E-69 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00145 Argininosuccinate lyase family signature 281 297 3.7E-69 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00145 Argininosuccinate lyase family signature 148 168 3.7E-69 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00145 Argininosuccinate lyase family signature 237 261 3.7E-69 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 Pfam PF14698 Argininosuccinate lyase C-terminal 369 437 5.0E-26 T 12-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 Gene3D G3DSA:1.20.200.10 113 451 9.9E-153 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00149 Fumarate lyase superfamily signature 281 297 6.5E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00149 Fumarate lyase superfamily signature 153 171 6.5E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00149 Fumarate lyase superfamily signature 237 264 6.5E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 PRINTS PR00149 Fumarate lyase superfamily signature 108 126 6.5E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 Gene3D G3DSA:1.10.40.30 368 438 9.9E-153 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 SUPERFAMILY SSF48557 10 460 2.36E-155 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 TIGRFAM TIGR00838 argH: argininosuccinate lyase 10 458 4.6E-196 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 Pfam PF00206 Lyase 12 306 1.4E-80 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 Gene3D G3DSA:1.10.275.50 5 112 3.7E-40 T 12-10-2018 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 Hamap MF_00006 Argininosuccinate lyase [argH]. 8 459 44.314 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_17220 bc74dc34b86fe77e95901a719c55b52c 465 ProSitePatterns PS00163 Fumarate lyases signature. 281 290 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 R615_12145 6308293b305bbf2abe25685620f7cd34 393 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 197 214 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PRINTS PR00471 Acetate kinase family signature 5 16 4.2E-42 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PRINTS PR00471 Acetate kinase family signature 167 180 4.2E-42 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PRINTS PR00471 Acetate kinase family signature 295 308 4.2E-42 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PRINTS PR00471 Acetate kinase family signature 197 218 4.2E-42 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PRINTS PR00471 Acetate kinase family signature 317 333 4.2E-42 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PRINTS PR00471 Acetate kinase family signature 371 383 4.2E-42 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 SUPERFAMILY SSF53067 151 390 7.32E-80 T 12-10-2018 R615_12145 6308293b305bbf2abe25685620f7cd34 393 Gene3D G3DSA:3.30.420.40 190 393 2.4E-69 T 12-10-2018 R615_12145 6308293b305bbf2abe25685620f7cd34 393 TIGRFAM TIGR00016 ackA: acetate kinase 3 390 2.0E-132 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 Pfam PF00871 Acetokinase family 5 383 8.3E-128 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 SUPERFAMILY SSF53067 4 189 2.02E-57 T 12-10-2018 R615_12145 6308293b305bbf2abe25685620f7cd34 393 PIRSF PIRSF000722 1 393 1.0E-132 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_12145 6308293b305bbf2abe25685620f7cd34 393 Gene3D G3DSA:3.30.420.40 1 189 6.8E-62 T 12-10-2018 R615_12145 6308293b305bbf2abe25685620f7cd34 393 Hamap MF_00020 Acetate kinase [ackA]. 1 393 155.693 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 R615_14550 99dee5b69b2225260c7d3df0cab0f606 204 Gene3D G3DSA:3.90.550.10 2 189 1.5E-28 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_14550 99dee5b69b2225260c7d3df0cab0f606 204 Pfam PF12804 MobA-like NTP transferase domain 6 159 5.2E-22 T 12-10-2018 IPR025877 MobA-like NTP transferase R615_14550 99dee5b69b2225260c7d3df0cab0f606 204 SUPERFAMILY SSF53448 5 160 1.08E-15 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_04720 ed20c27474f8bf66a47d8a76ce945c19 110 SUPERFAMILY SSF101498 31 106 6.41E-16 T 12-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily R615_04720 ed20c27474f8bf66a47d8a76ce945c19 110 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 10 106 4.8E-22 T 12-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 R615_04720 ed20c27474f8bf66a47d8a76ce945c19 110 Pfam PF04316 Anti-sigma-28 factor, FlgM 50 104 9.4E-16 T 12-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Gene3D G3DSA:3.40.50.300 398 510 1.3E-22 T 12-10-2018 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 24 642 2.0E-150 T 12-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 30 640 46.691 T 12-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Pfam PF13604 AAA domain 194 361 3.7E-32 T 12-10-2018 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Gene3D G3DSA:1.10.10.1020 16 144 2.2E-8 T 12-10-2018 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Gene3D G3DSA:2.30.30.940 511 557 2.6E-6 T 12-10-2018 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Pfam PF13538 UvrD-like helicase C-terminal domain 571 612 3.5E-14 T 12-10-2018 IPR027785 UvrD-like helicase C-terminal domain R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Gene3D G3DSA:3.40.50.300 558 632 8.5E-17 T 12-10-2018 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 Gene3D G3DSA:3.40.50.300 145 388 2.1E-64 T 12-10-2018 R615_10100 196c953ecdab72de83ffb0dd098ff193 645 SUPERFAMILY SSF52540 59 393 1.52E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10100 196c953ecdab72de83ffb0dd098ff193 645 SUPERFAMILY SSF52540 314 643 1.42E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01205 f635ce9c5d533590475aae7941892ded 423 Gene3D G3DSA:3.20.20.140 58 367 7.9E-108 T 12-10-2018 R615_01205 f635ce9c5d533590475aae7941892ded 423 Pfam PF01979 Amidohydrolase family 54 420 1.6E-9 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 R615_01205 f635ce9c5d533590475aae7941892ded 423 SUPERFAMILY SSF51338 4 422 5.94E-19 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_01205 f635ce9c5d533590475aae7941892ded 423 SUPERFAMILY SSF51556 57 366 8.45E-81 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_01205 f635ce9c5d533590475aae7941892ded 423 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 21 421 1.4E-87 T 12-10-2018 R615_01205 f635ce9c5d533590475aae7941892ded 423 Gene3D G3DSA:2.30.40.10 10 420 7.9E-108 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 Pfam PF00313 'Cold-shock' DNA-binding domain 99 161 2.1E-26 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 Gene3D G3DSA:2.40.50.140 97 161 3.6E-26 T 12-10-2018 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 SMART SM00357 99 162 3.4E-25 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 ProSitePatterns PS00352 'Cold-shock' domain signature. 111 129 - T 12-10-2018 IPR019844 Cold-shock conserved site R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 PRINTS PR00050 Cold shock protein signature 135 153 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 PRINTS PR00050 Cold shock protein signature 100 115 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 PRINTS PR00050 Cold shock protein signature 120 129 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12680 faa731dbb2a4550bb13c04acc08ca378 163 SUPERFAMILY SSF50249 97 161 2.01E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_05255 ed147198263d13c3e21e61e9f7f84f70 258 PIRSF PIRSF002884 27 258 4.7E-70 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 R615_05255 ed147198263d13c3e21e61e9f7f84f70 258 Pfam PF04344 Chemotaxis phosphatase, CheZ 50 258 1.2E-67 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 R615_05255 ed147198263d13c3e21e61e9f7f84f70 258 SUPERFAMILY SSF75708 40 257 1.7E-56 T 12-10-2018 R615_05255 ed147198263d13c3e21e61e9f7f84f70 258 Gene3D G3DSA:1.10.287.500 68 200 8.0E-40 T 12-10-2018 R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 ProSitePatterns PS00211 ABC transporters family signature. 390 404 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 Gene3D G3DSA:3.40.50.300 238 472 4.9E-49 T 12-10-2018 R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 SUPERFAMILY SSF52540 242 466 1.29E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 Pfam PF00005 ABC transporter 266 417 2.1E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 SMART SM00382 26 227 0.0074 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 SMART SM00382 274 468 7.1E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 Pfam PF00005 ABC transporter 22 155 1.4E-14 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 SUPERFAMILY SSF52540 2 230 3.95E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15290 4ebba4eee6ee458ad89ad1cd741a1bbb 475 Gene3D G3DSA:3.40.50.300 1 229 4.5E-33 T 12-10-2018 R615_12560 62437fc2fa130cb971499c8b9faafbfb 236 PIRSF PIRSF009467 14 236 5.9E-60 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 R615_12560 62437fc2fa130cb971499c8b9faafbfb 236 Hamap MF_01385 Urease accessory protein UreF [ureF]. 17 236 31.409 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 R615_12560 62437fc2fa130cb971499c8b9faafbfb 236 Gene3D G3DSA:1.10.4190.10 13 214 1.0E-50 T 12-10-2018 IPR038277 UreF domain superfamily R615_12560 62437fc2fa130cb971499c8b9faafbfb 236 Pfam PF01730 UreF 49 194 7.4E-38 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 R615_14440 f406c1ff40863039a6c4d0af34757e02 426 Pfam PF04285 Protein of unknown function (DUF444) 4 419 1.0E-177 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 R615_14440 f406c1ff40863039a6c4d0af34757e02 426 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 37.866 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 273 3.4E-131 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 PIRSF PIRSF002158 10 275 3.6E-101 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 Gene3D G3DSA:4.10.950.10 196 274 5.2E-37 T 12-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 SUPERFAMILY SSF50104 126 272 1.38E-60 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 SMART SM01382 124 252 3.7E-90 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 47.482 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 SUPERFAMILY SSF50249 3 125 8.91E-49 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 Gene3D G3DSA:2.40.50.140 1 114 1.4E-48 T 12-10-2018 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 9.2E-55 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 3.4E-33 T 12-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 12-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 SMART SM01383 42 118 2.6E-46 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16165 2a3f9c1bf5a3bba6f435a3e30a1abb24 275 Gene3D G3DSA:2.30.30.30 115 195 2.0E-31 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Pfam PF00158 Sigma-54 interaction domain 139 306 5.8E-70 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Pfam PF00072 Response regulator receiver domain 4 113 6.1E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 4 461 6.5E-227 T 12-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 SMART SM00382 159 302 4.9E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Gene3D G3DSA:3.40.50.2300 1 122 1.8E-38 T 12-10-2018 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Gene3D G3DSA:1.10.10.60 380 464 7.4E-24 T 12-10-2018 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 427 444 1.6E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 464 1.6E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Pfam PF02954 Bacterial regulatory protein, Fis family 422 461 3.3E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 SUPERFAMILY SSF52540 138 382 2.21E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 SMART SM00448 2 113 5.2E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Gene3D G3DSA:1.10.8.60 312 379 1.4E-17 T 12-10-2018 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 SUPERFAMILY SSF46689 379 464 5.38E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 Gene3D G3DSA:3.40.50.300 129 310 1.1E-67 T 12-10-2018 R615_02890 9c40d313ea7b62ea95af005b21f8073f 474 SUPERFAMILY SSF52172 2 184 3.27E-43 T 12-10-2018 IPR011006 CheY-like superfamily R615_07610 586e1602b1d2c3ffdb793ed8b0818d62 287 Gene3D G3DSA:3.60.15.10 1 287 2.2E-97 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_07610 586e1602b1d2c3ffdb793ed8b0818d62 287 SUPERFAMILY SSF56281 14 286 2.8E-41 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_07610 586e1602b1d2c3ffdb793ed8b0818d62 287 SMART SM00849 14 205 3.1E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_07610 586e1602b1d2c3ffdb793ed8b0818d62 287 Pfam PF00753 Metallo-beta-lactamase superfamily 26 205 3.8E-19 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_01475 18415955ac63f831796e64541764f89d 358 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 357 5.5E-130 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 R615_01475 18415955ac63f831796e64541764f89d 358 Gene3D G3DSA:3.30.420.40 142 318 9.9E-122 T 12-10-2018 R615_01475 18415955ac63f831796e64541764f89d 358 SUPERFAMILY SSF53067 4 331 2.04E-20 T 12-10-2018 R615_01475 18415955ac63f831796e64541764f89d 358 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 2 358 38.5 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 R615_01475 18415955ac63f831796e64541764f89d 358 Gene3D G3DSA:3.30.420.40 9 353 9.9E-122 T 12-10-2018 R615_08000 9883fd37341494b57bca4c960aed877e 161 Gene3D G3DSA:3.40.30.10 1 161 5.2E-67 T 12-10-2018 R615_08000 9883fd37341494b57bca4c960aed877e 161 PIRSF PIRSF000303 1 161 2.1E-66 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_08000 9883fd37341494b57bca4c960aed877e 161 Pfam PF00255 Glutathione peroxidase 6 110 1.3E-41 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_08000 9883fd37341494b57bca4c960aed877e 161 PRINTS PR01011 Glutathione peroxidase family signature 122 131 4.6E-20 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_08000 9883fd37341494b57bca4c960aed877e 161 PRINTS PR01011 Glutathione peroxidase family signature 21 38 4.6E-20 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_08000 9883fd37341494b57bca4c960aed877e 161 PRINTS PR01011 Glutathione peroxidase family signature 56 72 4.6E-20 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_08000 9883fd37341494b57bca4c960aed877e 161 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 12-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 R615_08000 9883fd37341494b57bca4c960aed877e 161 SUPERFAMILY SSF52833 2 158 5.44E-59 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_08000 9883fd37341494b57bca4c960aed877e 161 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 12-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 R615_12910 58232c584eb508c9a2045ecbbf8a0b9f 476 SUPERFAMILY SSF56935 24 475 8.88E-90 T 12-10-2018 R615_12910 58232c584eb508c9a2045ecbbf8a0b9f 476 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 475 7.7E-109 T 12-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) R615_12910 58232c584eb508c9a2045ecbbf8a0b9f 476 Gene3D G3DSA:2.40.160.60 24 476 1.6E-132 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 SUPERFAMILY SSF82693 139 322 7.67E-18 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.0E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 PRINTS PR00702 Acriflavin resistance protein family signature 382 406 1.0E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 PRINTS PR00702 Acriflavin resistance protein family signature 324 347 1.0E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 PRINTS PR00702 Acriflavin resistance protein family signature 435 458 1.0E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 1.0E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.0E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 SUPERFAMILY SSF82866 288 484 1.96E-39 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:3.30.2090.10 713 801 1.2E-248 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:3.30.2090.10 178 269 1.2E-248 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Pfam PF00873 AcrB/AcrD/AcrF family 5 1029 7.0E-170 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:3.30.70.1440 662 860 1.2E-248 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 SUPERFAMILY SSF82866 801 1032 4.84E-40 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:1.20.1640.10 505 1027 1.2E-248 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 SUPERFAMILY SSF82693 41 133 1.15E-20 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:3.30.70.1320 135 322 1.2E-248 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:3.30.70.1430 41 809 1.2E-248 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 SUPERFAMILY SSF82714 185 258 7.19E-7 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:3.30.70.1430 564 661 1.2E-248 T 12-10-2018 R615_11700 c554998d3d767db9a3cecd8c60731029 1034 SUPERFAMILY SSF82714 713 793 3.14E-8 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_11700 c554998d3d767db9a3cecd8c60731029 1034 Gene3D G3DSA:1.20.1640.10 11 504 1.2E-248 T 12-10-2018 R615_04770 e71370d6617b75c18c752444ce577415 225 PRINTS PR01008 Flagellar L-ring protein signature 138 153 3.1E-21 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_04770 e71370d6617b75c18c752444ce577415 225 PRINTS PR01008 Flagellar L-ring protein signature 164 180 3.1E-21 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_04770 e71370d6617b75c18c752444ce577415 225 PRINTS PR01008 Flagellar L-ring protein signature 66 78 3.1E-21 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_04770 e71370d6617b75c18c752444ce577415 225 PRINTS PR01008 Flagellar L-ring protein signature 201 215 3.1E-21 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_04770 e71370d6617b75c18c752444ce577415 225 PRINTS PR01008 Flagellar L-ring protein signature 185 199 3.1E-21 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_04770 e71370d6617b75c18c752444ce577415 225 Pfam PF02107 Flagellar L-ring protein 44 224 3.9E-58 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_04770 e71370d6617b75c18c752444ce577415 225 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 222 26.237 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 R615_01695 0d960c898c9afc09dfb449368c726d67 293 Pfam PF09850 Type VI secretion system protein DotU 52 255 4.3E-69 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU R615_01695 0d960c898c9afc09dfb449368c726d67 293 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 51 260 1.2E-73 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU R615_01695 0d960c898c9afc09dfb449368c726d67 293 Gene3D G3DSA:1.25.40.590 49 206 9.2E-56 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 SUPERFAMILY SSF52172 4 149 6.4E-40 T 12-10-2018 IPR011006 CheY-like superfamily R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 Pfam PF00072 Response regulator receiver domain 5 112 1.2E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 Gene3D G3DSA:3.60.40.10 173 389 2.4E-39 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 SMART SM00331 170 387 8.1E-12 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 197 385 2.7E-28 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 Gene3D G3DSA:1.20.5.390 108 160 3.5E-18 T 12-10-2018 R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 SMART SM00448 3 114 2.1E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08480 9201700c3ed5ce0a2bca7613f613ddd5 390 Gene3D G3DSA:3.40.50.2300 1 106 7.7E-28 T 12-10-2018 R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 Gene3D G3DSA:3.30.450.20 68 196 1.9E-5 T 12-10-2018 R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 SUPERFAMILY SSF55785 66 189 4.26E-5 T 12-10-2018 IPR035965 PAS domain superfamily R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 Pfam PF00563 EAL domain 380 620 5.1E-67 T 12-10-2018 IPR001633 EAL domain R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 Pfam PF00990 Diguanylate cyclase, GGDEF domain 202 358 9.2E-50 T 12-10-2018 IPR000160 GGDEF domain R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 Gene3D G3DSA:3.20.20.450 377 632 2.9E-91 T 12-10-2018 IPR035919 EAL domain superfamily R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 Gene3D G3DSA:3.30.70.270 197 376 2.5E-62 T 12-10-2018 R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 SUPERFAMILY SSF55073 207 365 8.63E-52 T 12-10-2018 IPR029787 Nucleotide cyclase R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 200 360 1.9E-43 T 12-10-2018 IPR000160 GGDEF domain R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 SMART SM00267 191 363 1.5E-65 T 12-10-2018 IPR000160 GGDEF domain R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 SMART SM00052 373 625 2.4E-105 T 12-10-2018 IPR001633 EAL domain R615_07530 d0568d98e80fea96f33030e44b8e2f95 647 SUPERFAMILY SSF141868 379 631 6.15E-84 T 12-10-2018 IPR035919 EAL domain superfamily R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 SUPERFAMILY SSF54211 221 395 5.88E-56 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 3 807 100.878 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 6 16 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 181 196 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 377 397 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 473 482 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 220 242 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 315 331 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 196 209 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 760 772 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 776 792 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 245 263 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR01159 DNA gyrase subunit B signature 363 377 2.2E-80 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 ProSitePatterns PS00177 DNA topoisomerase II signature. 425 433 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 SUPERFAMILY SSF55874 6 218 3.27E-73 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 796 1.1E-30 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Pfam PF00204 DNA gyrase B 221 393 2.6E-56 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 6 806 4.9E-297 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 171 1.0E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 SUPERFAMILY SSF56719 397 798 1.52E-86 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Gene3D G3DSA:3.40.50.670 402 573 9.7E-73 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 SMART SM00433 36 800 3.7E-264 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Gene3D G3DSA:3.30.565.10 3 219 1.3E-92 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Gene3D G3DSA:3.10.20.690 595 686 2.8E-17 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Gene3D G3DSA:3.30.230.10 220 401 2.7E-67 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 SMART SM00387 32 176 7.5E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Gene3D G3DSA:3.40.50.670 709 805 6.1E-26 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 Pfam PF01751 Toprim domain 422 534 1.5E-17 T 12-10-2018 IPR006171 TOPRIM domain R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 36 51 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 271 284 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 490 506 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 739 755 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 528 540 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 71 84 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 114 128 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 423 437 2.2E-69 T 12-10-2018 R615_00015 63c1e82991faca8a6b7ac0b1ec9f96e8 807 PRINTS PR00418 DNA topoisomerase II family signature 508 525 2.2E-69 T 12-10-2018 R615_13000 536a064683a2e64e933623ef8ccda829 237 Gene3D G3DSA:3.60.20.10 2 215 3.7E-26 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_13000 536a064683a2e64e933623ef8ccda829 237 Pfam PF00227 Proteasome subunit 4 181 7.1E-10 T 12-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 R615_13000 536a064683a2e64e933623ef8ccda829 237 PIRSF PIRSF009120 1 237 2.3E-100 T 12-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 R615_13000 536a064683a2e64e933623ef8ccda829 237 SUPERFAMILY SSF56235 2 236 5.09E-34 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_00810 fd6d08e603fc9284df5a7f6c0939eb12 54 Pfam PF00301 Rubredoxin 3 49 5.8E-23 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_00810 fd6d08e603fc9284df5a7f6c0939eb12 54 SUPERFAMILY SSF57802 1 53 4.21E-23 T 12-10-2018 R615_00810 fd6d08e603fc9284df5a7f6c0939eb12 54 PIRSF PIRSF000071 1 54 1.2E-25 T 12-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 R615_00810 fd6d08e603fc9284df5a7f6c0939eb12 54 Gene3D G3DSA:2.20.28.10 1 54 2.1E-28 T 12-10-2018 R615_00810 fd6d08e603fc9284df5a7f6c0939eb12 54 PRINTS PR00163 Rubredoxin signature 3 19 1.8E-8 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_00810 fd6d08e603fc9284df5a7f6c0939eb12 54 PRINTS PR00163 Rubredoxin signature 33 49 1.8E-8 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 R615_05320 eaf71c1c48f695370abc08e954b498e5 157 PIRSF PIRSF000239 1 157 4.2E-21 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_05320 eaf71c1c48f695370abc08e954b498e5 157 Pfam PF00578 AhpC/TSA family 8 136 9.7E-39 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_05320 eaf71c1c48f695370abc08e954b498e5 157 Gene3D G3DSA:3.40.30.10 6 156 2.6E-48 T 12-10-2018 R615_05320 eaf71c1c48f695370abc08e954b498e5 157 SUPERFAMILY SSF52833 6 157 1.1E-49 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_17270 9ce469d4967d60b39baab5be2474a830 317 SUPERFAMILY SSF53850 25 240 3.76E-30 T 12-10-2018 R615_17270 9ce469d4967d60b39baab5be2474a830 317 Gene3D G3DSA:3.40.190.10 125 315 2.1E-23 T 12-10-2018 R615_17270 9ce469d4967d60b39baab5be2474a830 317 Pfam PF13379 NMT1-like family 22 236 6.8E-15 T 12-10-2018 R615_17270 9ce469d4967d60b39baab5be2474a830 317 Gene3D G3DSA:3.40.190.10 22 116 1.9E-8 T 12-10-2018 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 841 0.0 T 12-10-2018 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Gene3D G3DSA:3.30.1360.40 236 333 3.9E-228 T 12-10-2018 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 SUPERFAMILY SSF56719 30 521 7.85E-181 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 745 789 2.1E-12 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 794 840 1.2E-12 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 639 1.8E-11 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 738 6.2E-14 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 646 689 1.5E-8 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 540 585 1.1E-8 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 2.8E-151 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 SUPERFAMILY SSF101904 533 847 8.24E-106 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 SMART SM00434 11 499 3.5E-289 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Gene3D G3DSA:1.10.268.10 370 493 3.9E-228 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 842 24.062 T 12-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Gene3D G3DSA:3.90.199.10 33 521 3.9E-228 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 R615_06220 6c9bb4b9bd5235f4cb039c980ced487f 891 Gene3D G3DSA:2.120.10.90 531 842 2.6E-122 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal R615_15880 540019afc043a2dd5ad9aeb08d09cbdb 435 Gene3D G3DSA:1.20.1250.20 3 195 4.8E-14 T 12-10-2018 R615_15880 540019afc043a2dd5ad9aeb08d09cbdb 435 SUPERFAMILY SSF103473 6 395 9.94E-42 T 12-10-2018 IPR036259 MFS transporter superfamily R615_15880 540019afc043a2dd5ad9aeb08d09cbdb 435 Gene3D G3DSA:1.20.1250.20 212 410 2.6E-18 T 12-10-2018 R615_15880 540019afc043a2dd5ad9aeb08d09cbdb 435 Pfam PF07690 Major Facilitator Superfamily 218 404 1.3E-19 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 241 266 6.1E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 196 216 6.1E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 88 108 6.1E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 108 127 6.1E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 217 238 6.1E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 69 88 6.1E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 Pfam PF00813 FliP family 71 263 3.5E-77 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 127 139 6.8E-21 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 67 76 6.8E-21 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 167 179 6.8E-21 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 139 153 6.8E-21 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 189 201 6.8E-21 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 257 267 6.8E-21 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 196 211 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 71 267 2.0E-83 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 R615_05205 7357de6478f979bb482f1af1fa89079c 270 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 244 256 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 Gene3D G3DSA:2.130.10.10 23 124 2.0E-5 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 Gene3D G3DSA:2.130.10.10 125 325 6.9E-36 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 SUPERFAMILY SSF50978 43 316 4.03E-42 T 12-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 SMART SM00320 197 235 0.0038 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 SMART SM00320 156 194 0.028 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 SMART SM00320 238 277 0.042 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 SMART SM00320 71 112 36.0 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 181 195 - T 12-10-2018 IPR019775 WD40 repeat, conserved site R615_17050 25f5b35a5e115641b3e2ff2526c6e79d 325 Pfam PF13360 PQQ-like domain 62 282 3.8E-8 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 SUPERFAMILY SSF47644 663 750 6.02E-29 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Gene3D G3DSA:3.10.196.10 921 1235 1.0E-136 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 TIGRFAM TIGR02082 metH: methionine synthase 28 1204 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Gene3D G3DSA:3.20.20.330 15 351 5.6E-123 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Pfam PF02607 B12 binding domain 670 743 1.6E-23 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Gene3D G3DSA:3.20.20.20 353 655 1.4E-128 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 950 1221 6.5E-123 T 12-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Pfam PF02310 B12 binding domain 760 852 1.8E-19 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 SUPERFAMILY SSF82282 24 412 5.76E-113 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Gene3D G3DSA:1.10.288.10 949 1105 1.0E-136 T 12-10-2018 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 SUPERFAMILY SSF56507 914 1238 1.31E-127 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Pfam PF00809 Pterin binding enzyme 373 611 2.9E-58 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 SUPERFAMILY SSF51717 369 643 2.49E-86 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 SMART SM01018 668 751 5.3E-44 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 SUPERFAMILY SSF52242 755 907 3.79E-44 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Pfam PF02574 Homocysteine S-methyltransferase 32 338 8.2E-76 T 12-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 PIRSF PIRSF000381 15 1208 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Gene3D G3DSA:3.40.50.280 756 908 1.1E-53 T 12-10-2018 R615_08465 15bf4a1d428a0bfd8a05cb7444f923c2 1239 Gene3D G3DSA:1.10.1240.10 660 748 6.2E-39 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_09625 b4ebf0bb14d6244260b9865cb5652b86 89 Pfam PF01402 Ribbon-helix-helix protein, copG family 51 87 9.6E-7 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 R615_04635 7d5efc1e0d669987d01e6e93cd989b16 362 Pfam PF00753 Metallo-beta-lactamase superfamily 45 253 7.9E-18 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04635 7d5efc1e0d669987d01e6e93cd989b16 362 SUPERFAMILY SSF56281 11 327 1.01E-48 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_04635 7d5efc1e0d669987d01e6e93cd989b16 362 SMART SM00849 47 253 3.0E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 SMART SM01390 3 95 1.3E-47 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 Gene3D G3DSA:1.10.1050.10 1 102 4.5E-44 T 12-10-2018 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 6.9E-81 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 Gene3D G3DSA:3.10.290.10 103 191 3.6E-35 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 35.512 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 SUPERFAMILY SSF55174 3 206 5.36E-68 T 12-10-2018 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 12-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 Pfam PF01479 S4 domain 97 143 1.5E-19 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 SMART SM00363 96 160 1.8E-18 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16065 acbadc7a4c8c59f025907a12fc722eee 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 1.4E-31 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 Gene3D G3DSA:1.10.240.10 227 329 2.0E-35 T 12-10-2018 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 Pfam PF00579 tRNA synthetases class I (W and Y) 34 327 1.2E-83 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 5 430 5.0E-113 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 SUPERFAMILY SSF52374 4 327 1.93E-97 T 12-10-2018 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 Gene3D G3DSA:3.10.290.10 330 433 6.7E-13 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 2.8E-30 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 2.8E-30 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 2.8E-30 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 2.8E-30 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 SUPERFAMILY SSF55174 325 430 1.84E-8 T 12-10-2018 R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 Gene3D G3DSA:3.40.50.620 1 226 1.4E-88 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_01485 35b2fcb15de0bacb2ea44fbf97aad65b 433 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 3 431 42.953 T 12-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 R615_03380 433774eb7031663060000702cd163505 320 SUPERFAMILY SSF55120 76 312 2.67E-77 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_03380 433774eb7031663060000702cd163505 320 SUPERFAMILY SSF55174 18 67 2.19E-6 T 12-10-2018 R615_03380 433774eb7031663060000702cd163505 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 311 4.0E-98 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_03380 433774eb7031663060000702cd163505 320 Pfam PF00849 RNA pseudouridylate synthase 91 241 6.4E-32 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_03380 433774eb7031663060000702cd163505 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_03380 433774eb7031663060000702cd163505 320 Pfam PF01479 S4 domain 19 51 2.9E-6 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_03380 433774eb7031663060000702cd163505 320 Gene3D G3DSA:3.30.2350.10 83 314 4.4E-71 T 12-10-2018 R615_03380 433774eb7031663060000702cd163505 320 Gene3D G3DSA:3.10.290.10 2 74 1.6E-17 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 845 856 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 SUPERFAMILY SSF81935 21 194 1.44E-44 T 12-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 Gene3D G3DSA:3.40.605.10 582 1042 1.5E-136 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 SUPERFAMILY SSF53720 583 1046 2.62E-114 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 SUPERFAMILY SSF51730 195 537 2.04E-102 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 529 1039 4.0E-192 T 12-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 75 192 1.3E-36 T 12-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 Pfam PF00171 Aldehyde dehydrogenase family 583 1039 4.0E-102 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 Gene3D G3DSA:3.40.309.10 820 1010 1.5E-136 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 Gene3D G3DSA:3.20.20.220 150 529 1.8E-124 T 12-10-2018 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 Pfam PF01619 Proline dehydrogenase 206 494 4.4E-89 T 12-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 R615_07490 05bffc29ce3427b6c2efe2f6f8304133 1073 PIRSF PIRSF000197 7 1070 0.0 T 12-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:1.20.1640.10 15 517 3.7E-280 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:3.30.2090.10 189 280 3.7E-280 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82866 810 1034 3.79E-54 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:3.30.70.1440 675 872 3.7E-280 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:3.30.70.1430 570 674 3.7E-280 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82714 192 274 3.27E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82714 725 810 3.92E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 1.9E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.9E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.9E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.9E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.9E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.9E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82693 154 333 8.37E-19 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82693 42 128 1.5E-19 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Pfam PF00873 AcrB/AcrD/AcrF family 6 1029 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:3.30.2090.10 726 814 3.7E-280 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:3.30.70.1430 42 822 3.7E-280 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:1.20.1640.10 518 1027 3.7E-280 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 Gene3D G3DSA:3.30.70.1320 135 333 3.7E-280 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82693 567 663 5.75E-9 T 12-10-2018 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1041 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 R615_09130 aa56ab39f48da98b929ad031a64d09cb 1046 SUPERFAMILY SSF82866 300 506 1.57E-29 T 12-10-2018 R615_04445 554ba53198f786237395ca5dc8932017 536 Pfam PF13007 Transposase C of IS166 homeodomain 51 131 1.0E-13 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain R615_04445 554ba53198f786237395ca5dc8932017 536 Pfam PF03050 Transposase IS66 family 197 484 2.4E-101 T 12-10-2018 IPR004291 Transposase, IS66 R615_04445 554ba53198f786237395ca5dc8932017 536 Pfam PF13005 zinc-finger binding domain of transposase IS66 140 182 3.6E-11 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 R615_04445 554ba53198f786237395ca5dc8932017 536 Pfam PF13817 IS66 C-terminal element 491 528 1.2E-15 T 12-10-2018 IPR039552 Transposase IS66, C-terminal R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 ProSitePatterns PS00018 EF-hand calcium-binding domain. 1805 1817 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 SUPERFAMILY SSF56925 2101 2253 3.92E-11 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 SUPERFAMILY SSF103647 1897 1971 2.88E-5 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 Gene3D G3DSA:4.10.1080.10 1872 1990 2.7E-6 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 SUPERFAMILY SSF103647 1754 1832 7.59E-8 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 Gene3D G3DSA:2.40.160.20 2100 2253 1.4E-8 T 12-10-2018 R615_16415 0b2d366b3cc2704c0012535d54bf3fd7 2253 SUPERFAMILY SSF103647 1951 2052 5.89E-7 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_06360 9ffacae4babf69697a67a6eb7a547a94 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 153 2.7E-5 T 12-10-2018 IPR001451 Hexapeptide repeat R615_06360 9ffacae4babf69697a67a6eb7a547a94 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 89 115 4.7E-4 T 12-10-2018 IPR001451 Hexapeptide repeat R615_06360 9ffacae4babf69697a67a6eb7a547a94 207 Gene3D G3DSA:3.40.50.20 1 87 9.8E-20 T 12-10-2018 R615_06360 9ffacae4babf69697a67a6eb7a547a94 207 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 3 203 6.5E-64 T 12-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like R615_06360 9ffacae4babf69697a67a6eb7a547a94 207 Gene3D G3DSA:2.160.10.10 89 203 9.4E-28 T 12-10-2018 R615_06360 9ffacae4babf69697a67a6eb7a547a94 207 SUPERFAMILY SSF51161 2 206 6.79E-43 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Gene3D G3DSA:3.40.1190.10 108 322 2.1E-80 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 SUPERFAMILY SSF53244 324 474 2.01E-47 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Gene3D G3DSA:3.40.50.720 20 107 1.6E-31 T 12-10-2018 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 SUPERFAMILY SSF53623 105 322 3.92E-73 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Gene3D G3DSA:3.90.190.20 323 477 8.9E-47 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 415 2.5E-23 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Pfam PF01225 Mur ligase family, catalytic domain 22 118 2.2E-27 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 477 43.061 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 22 467 1.2E-170 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 Pfam PF08245 Mur ligase middle domain 124 305 1.0E-29 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 R615_13395 c5cc998720ad7fa9262d2ebe12fc7c6d 484 SUPERFAMILY SSF51984 22 106 4.97E-28 T 12-10-2018 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 167 3.5E-34 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 SUPERFAMILY SSF52540 8 217 8.17E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12765 82f1b962da0daea3b737120e02e6cb64 296 Gene3D G3DSA:3.30.300.20 183 295 2.2E-41 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_12765 82f1b962da0daea3b737120e02e6cb64 296 SUPERFAMILY SSF54814 179 294 4.97E-41 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 Pfam PF07650 KH domain 206 281 6.5E-20 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 76 94 2.8E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 8 28 2.8E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 Gene3D G3DSA:3.40.50.300 2 181 5.2E-53 T 12-10-2018 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 Hamap MF_00367 GTPase Era [era]. 3 293 37.025 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 Pfam PF01926 50S ribosome-binding GTPase 8 122 6.3E-26 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12765 82f1b962da0daea3b737120e02e6cb64 296 TIGRFAM TIGR00436 era: GTP-binding protein Era 6 276 3.7E-99 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Gene3D G3DSA:3.40.50.300 1 291 4.4E-101 T 12-10-2018 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Hamap MF_00054_B Elongation factor G [fusA]. 3 688 101.576 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Gene3D G3DSA:3.30.230.10 481 684 3.4E-84 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Pfam PF00679 Elongation factor G C-terminus 598 683 1.9E-27 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 689 2.3E-289 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Gene3D G3DSA:3.30.70.240 601 671 3.4E-84 T 12-10-2018 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SUPERFAMILY SSF50447 262 399 1.1E-31 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SUPERFAMILY SSF54211 476 596 1.14E-41 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SMART SM00889 477 595 4.3E-64 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 PRINTS PR00315 GTP-binding elongation factor signature 9 22 4.8E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 PRINTS PR00315 GTP-binding elongation factor signature 127 136 4.8E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 PRINTS PR00315 GTP-binding elongation factor signature 75 85 4.8E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 PRINTS PR00315 GTP-binding elongation factor signature 55 63 4.8E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SUPERFAMILY SSF54980 600 692 1.25E-27 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Pfam PF00009 Elongation factor Tu GTP binding domain 6 279 5.1E-61 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Pfam PF14492 Elongation Factor G, domain II 401 475 3.2E-29 T 12-10-2018 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Pfam PF03144 Elongation factor Tu domain 2 321 388 8.8E-18 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Gene3D G3DSA:2.40.30.10 292 413 3.3E-42 T 12-10-2018 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SMART SM00838 597 684 5.3E-42 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Gene3D G3DSA:3.30.70.870 430 480 5.4E-20 T 12-10-2018 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SUPERFAMILY SSF54980 401 478 2.88E-21 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 170 1.5E-24 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 SUPERFAMILY SSF52540 3 279 3.03E-97 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16260 5784286f9dd14c781e110e09bc57a1f4 696 Pfam PF03764 Elongation factor G, domain IV 476 594 2.1E-44 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 SMART SM00846 130 291 1.4E-50 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 296 453 3.7E-50 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 132 465 1.9E-112 T 12-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 131 241 8.1E-22 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 289 296 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 368 385 9.3E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 249 262 9.3E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 312 328 9.3E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 285 303 9.3E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 410 425 9.3E-19 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 SUPERFAMILY SSF55347 291 454 7.44E-57 T 12-10-2018 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 Gene3D G3DSA:3.30.360.10 290 455 1.0E-115 T 12-10-2018 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 Gene3D G3DSA:3.40.50.720 132 466 1.0E-115 T 12-10-2018 R615_07265 b23c63838b711a5b654b16a03966b1d6 482 SUPERFAMILY SSF51735 131 307 6.74E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04640 edea837a2d3e58275be0107c4b2fc6a9 223 Gene3D G3DSA:1.10.357.10 20 221 7.8E-50 T 12-10-2018 R615_04640 edea837a2d3e58275be0107c4b2fc6a9 223 SUPERFAMILY SSF46689 14 83 4.46E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_04640 edea837a2d3e58275be0107c4b2fc6a9 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 1.7E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_04640 edea837a2d3e58275be0107c4b2fc6a9 223 SUPERFAMILY SSF48498 98 219 1.07E-10 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_05355 213146265b611b1bc63cafbd2b7d6909 516 SMART SM00283 252 513 5.1E-52 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_05355 213146265b611b1bc63cafbd2b7d6909 516 SUPERFAMILY SSF55785 21 114 1.47E-24 T 12-10-2018 IPR035965 PAS domain superfamily R615_05355 213146265b611b1bc63cafbd2b7d6909 516 Pfam PF08447 PAS fold 31 114 1.8E-15 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 R615_05355 213146265b611b1bc63cafbd2b7d6909 516 SUPERFAMILY SSF58104 258 514 1.12E-60 T 12-10-2018 R615_05355 213146265b611b1bc63cafbd2b7d6909 516 Gene3D G3DSA:1.10.287.950 225 516 7.7E-56 T 12-10-2018 R615_05355 213146265b611b1bc63cafbd2b7d6909 516 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 298 479 8.6E-39 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_05355 213146265b611b1bc63cafbd2b7d6909 516 Gene3D G3DSA:3.30.450.20 1 116 4.7E-22 T 12-10-2018 R615_05355 213146265b611b1bc63cafbd2b7d6909 516 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 111 3.5E-12 T 12-10-2018 IPR000014 PAS domain R615_02280 3004a7dd4d15989aab1e76a077bc0142 396 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 221 389 7.7E-53 T 12-10-2018 IPR000160 GGDEF domain R615_02280 3004a7dd4d15989aab1e76a077bc0142 396 Pfam PF00990 Diguanylate cyclase, GGDEF domain 225 386 1.5E-46 T 12-10-2018 IPR000160 GGDEF domain R615_02280 3004a7dd4d15989aab1e76a077bc0142 396 Gene3D G3DSA:3.30.70.270 219 394 2.4E-57 T 12-10-2018 R615_02280 3004a7dd4d15989aab1e76a077bc0142 396 SMART SM00267 213 390 3.8E-58 T 12-10-2018 IPR000160 GGDEF domain R615_02280 3004a7dd4d15989aab1e76a077bc0142 396 SUPERFAMILY SSF55073 229 389 6.75E-48 T 12-10-2018 IPR029787 Nucleotide cyclase R615_09640 c65af99fc955de5b01553b92640addc7 198 Gene3D G3DSA:3.50.70.10 28 180 7.8E-14 T 12-10-2018 IPR016088 Chalcone isomerase, 3-layer sandwich KEGG: 00941+5.5.1.6|MetaCyc: PWY-2002|MetaCyc: PWY-5059|MetaCyc: PWY-6325|MetaCyc: PWY-6787|MetaCyc: PWY-7397|MetaCyc: PWY-7897 R615_09640 c65af99fc955de5b01553b92640addc7 198 Pfam PF16036 Chalcone isomerase-like 27 196 3.4E-45 T 12-10-2018 IPR016087 Chalcone isomerase GO:0016872 R615_09640 c65af99fc955de5b01553b92640addc7 198 SUPERFAMILY SSF54626 38 196 1.31E-13 T 12-10-2018 IPR036298 Chalcone isomerase superfamily GO:0016872 R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 SUPERFAMILY SSF52540 1 359 5.35E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 ProSitePatterns PS00617 RecF protein signature 1. 118 138 - T 12-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 Gene3D G3DSA:3.40.50.300 6 332 7.0E-84 T 12-10-2018 R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 350 9.2E-25 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 Gene3D G3DSA:1.20.1050.90 121 297 7.0E-84 T 12-10-2018 R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 354 1.0E-98 T 12-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 12-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 R615_00010 ca2b38522d18f6dbced64e5b1c0dbc22 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 85.23 T 12-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 SUPERFAMILY SSF48452 386 447 5.82E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 Pfam PF07719 Tetratricopeptide repeat 411 441 5.0E-5 T 12-10-2018 IPR013105 Tetratricopeptide repeat 2 R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 SUPERFAMILY SSF53300 99 237 2.52E-16 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 SMART SM00327 98 270 2.2E-5 T 12-10-2018 IPR002035 von Willebrand factor, type A R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 Gene3D G3DSA:3.40.50.410 95 286 2.5E-27 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 Gene3D G3DSA:1.25.40.10 379 484 8.0E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 SMART SM00028 411 444 7.1E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_11490 cf9ad5370c55d7bb736f96f5613f90c8 681 Pfam PF13519 von Willebrand factor type A domain 102 209 6.7E-14 T 12-10-2018 IPR002035 von Willebrand factor, type A R615_00675 e951a38a4595a7de3ac929328375b0a4 184 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 7 180 5.7E-51 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 R615_00675 e951a38a4595a7de3ac929328375b0a4 184 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 121 127 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_00675 e951a38a4595a7de3ac929328375b0a4 184 Pfam PF03602 Conserved hypothetical protein 95 9 179 4.2E-54 T 12-10-2018 R615_00675 e951a38a4595a7de3ac929328375b0a4 184 PIRSF PIRSF004553 8 183 4.1E-48 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 R615_00675 e951a38a4595a7de3ac929328375b0a4 184 SUPERFAMILY SSF53335 9 179 5.91E-48 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_00675 e951a38a4595a7de3ac929328375b0a4 184 Gene3D G3DSA:3.40.50.150 2 183 4.3E-61 T 12-10-2018 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.6E-75 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 Gene3D G3DSA:3.90.930.12 83 177 5.9E-40 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 PIRSF PIRSF002162 1 177 2.1E-46 T 12-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 12-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 Pfam PF00347 Ribosomal protein L6 11 82 2.9E-16 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 Pfam PF00347 Ribosomal protein L6 91 164 1.0E-19 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.1E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.1E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.1E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 Gene3D G3DSA:3.90.930.12 1 82 1.7E-28 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 37.356 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 SUPERFAMILY SSF56053 83 177 7.46E-37 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16105 596fcf7cb799bbd87cb6679fb6b673fe 177 SUPERFAMILY SSF56053 1 82 2.75E-23 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_17135 aaa3135706e37737941c0944a8f0782b 630 Pfam PF00005 ABC transporter 18 175 1.2E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_17135 aaa3135706e37737941c0944a8f0782b 630 Pfam PF00005 ABC transporter 327 456 3.6E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_17135 aaa3135706e37737941c0944a8f0782b 630 SMART SM00382 26 219 2.9E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_17135 aaa3135706e37737941c0944a8f0782b 630 SMART SM00382 334 501 1.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_17135 aaa3135706e37737941c0944a8f0782b 630 SUPERFAMILY SSF52540 2 243 3.2E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17135 aaa3135706e37737941c0944a8f0782b 630 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_17135 aaa3135706e37737941c0944a8f0782b 630 Pfam PF12848 ABC transporter 214 293 9.7E-27 T 12-10-2018 IPR032781 ABC-transporter extension domain R615_17135 aaa3135706e37737941c0944a8f0782b 630 SUPERFAMILY SSF52540 291 514 2.36E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17135 aaa3135706e37737941c0944a8f0782b 630 Pfam PF16326 ABC transporter C-terminal domain 542 624 7.8E-9 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 R615_17135 aaa3135706e37737941c0944a8f0782b 630 Gene3D G3DSA:3.40.50.300 1 256 3.5E-59 T 12-10-2018 R615_17135 aaa3135706e37737941c0944a8f0782b 630 Gene3D G3DSA:3.40.50.300 272 537 1.3E-49 T 12-10-2018 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Pfam PF13549 ATP-grasp domain 486 694 6.0E-36 T 12-10-2018 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Gene3D G3DSA:3.40.50.720 3 135 4.8E-31 T 12-10-2018 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 SUPERFAMILY SSF51735 2 143 7.88E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Pfam PF13380 CoA binding domain 14 140 1.0E-17 T 12-10-2018 IPR003781 CoA-binding GO:0048037 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Gene3D G3DSA:3.40.50.261 136 296 2.6E-35 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Pfam PF00583 Acetyltransferase (GNAT) family 769 872 1.3E-10 T 12-10-2018 IPR000182 GNAT domain R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Gene3D G3DSA:3.30.470.20 494 697 1.7E-35 T 12-10-2018 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 SMART SM00881 9 105 2.6E-27 T 12-10-2018 IPR003781 CoA-binding GO:0048037 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 SUPERFAMILY SSF56059 495 695 5.89E-6 T 12-10-2018 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 157 294 2.3E-32 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 SUPERFAMILY SSF52210 137 296 6.15E-25 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 SUPERFAMILY SSF52210 302 456 1.96E-30 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 SUPERFAMILY SSF55729 708 873 5.14E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Gene3D G3DSA:3.30.1490.20 509 594 1.7E-35 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Gene3D G3DSA:3.40.50.261 301 462 1.4E-38 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_08735 d5a6c2650cfacbb50e7fb86fb1e01001 904 Gene3D G3DSA:3.40.630.30 733 899 9.8E-42 T 12-10-2018 R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 PIRSF PIRSF037893 2 883 3.8E-217 T 12-10-2018 IPR017309 Peptidase S8A, subtilisin-related, proteobacteria R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 348 359 - T 12-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 PRINTS PR00723 Subtilisin serine protease family (S8) signature 584 600 1.7E-18 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 PRINTS PR00723 Subtilisin serine protease family (S8) signature 343 362 1.7E-18 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 PRINTS PR00723 Subtilisin serine protease family (S8) signature 400 413 1.7E-18 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 Gene3D G3DSA:3.40.50.200 311 657 3.9E-95 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 SUPERFAMILY SSF117074 754 801 1.83E-7 T 12-10-2018 R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 404 414 - T 12-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 SUPERFAMILY SSF52743 321 648 3.01E-80 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 585 595 - T 12-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 Gene3D G3DSA:2.60.120.380 93 191 1.8E-9 T 12-10-2018 R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 Gene3D G3DSA:2.60.40.10 756 846 2.4E-5 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_00230 d30fd9b26135942fdd18ee6c807bda58 888 Pfam PF00082 Subtilase family 343 634 6.8E-50 T 12-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 R615_04840 8eb10dcbfa14922f3e9c844078f76699 407 Pfam PF13440 Polysaccharide biosynthesis protein 25 297 2.3E-9 T 12-10-2018 R615_02365 95cdd305c99fa04d4a36813f9143e577 456 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 253 432 4.5E-13 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 R615_02365 95cdd305c99fa04d4a36813f9143e577 456 SUPERFAMILY SSF55073 251 431 4.08E-27 T 12-10-2018 IPR029787 Nucleotide cyclase R615_02365 95cdd305c99fa04d4a36813f9143e577 456 Gene3D G3DSA:3.30.70.1230 251 442 9.4E-25 T 12-10-2018 IPR029787 Nucleotide cyclase R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 SUPERFAMILY SSF52540 7 239 5.31E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 258 444 1.5E-49 T 12-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 495 183.399 T 12-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 8 478 2.8E-133 T 12-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 SUPERFAMILY SSF52317 260 454 7.84E-36 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 Gene3D G3DSA:3.40.50.880 273 455 5.1E-17 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 233 1.2E-18 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain R615_13890 db638e90ffa9b28583f2ac20eecb5a44 504 Gene3D G3DSA:3.40.50.300 7 239 1.5E-51 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 Gene3D G3DSA:3.10.150.10 249 366 1.8E-35 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 SUPERFAMILY SSF55979 246 366 1.71E-34 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 243 2.3E-35 T 12-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 Gene3D G3DSA:3.10.150.10 123 248 1.3E-37 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 SMART SM00480 17 362 3.7E-140 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 2.2E-40 T 12-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 SUPERFAMILY SSF55979 126 244 6.0E-30 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 SUPERFAMILY SSF55979 1 121 1.83E-31 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 Gene3D G3DSA:3.10.150.10 1 122 1.8E-48 T 12-10-2018 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 PIRSF PIRSF000804 1 366 1.9E-123 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 5.4E-108 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 R615_00005 8b03a5218b6a41ff71d062b50acfc824 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 246 365 2.0E-35 T 12-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 Pfam PF00990 Diguanylate cyclase, GGDEF domain 431 588 4.5E-46 T 12-10-2018 IPR000160 GGDEF domain R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 Pfam PF07696 7TMR-DISM extracellular 2 40 165 3.1E-18 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 Gene3D G3DSA:2.60.40.2380 33 171 5.2E-19 T 12-10-2018 R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 Pfam PF07695 7TM diverse intracellular signalling 182 382 4.5E-29 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 Gene3D G3DSA:3.30.70.270 415 591 1.2E-55 T 12-10-2018 R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 426 591 2.7E-48 T 12-10-2018 IPR000160 GGDEF domain R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 SUPERFAMILY SSF55073 435 591 3.22E-47 T 12-10-2018 IPR029787 Nucleotide cyclase R615_14035 50beda6454d9e43f7514bdfb302ae2c4 603 SMART SM00267 419 593 5.1E-60 T 12-10-2018 IPR000160 GGDEF domain R615_12545 5068b238457c70fee96ef65dc79d5be1 106 SUPERFAMILY SSF51278 1 104 3.79E-47 T 12-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12545 5068b238457c70fee96ef65dc79d5be1 106 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.617 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12545 5068b238457c70fee96ef65dc79d5be1 106 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 102 1.6E-45 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12545 5068b238457c70fee96ef65dc79d5be1 106 Gene3D G3DSA:2.10.150.10 1 106 2.1E-47 T 12-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12545 5068b238457c70fee96ef65dc79d5be1 106 Pfam PF00699 Urease beta subunit 3 99 1.2E-44 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 SUPERFAMILY SSF54913 1 112 1.02E-45 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 SMART SM00938 4 105 4.5E-67 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 PRINTS PR00340 P-II protein signature 2 17 1.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 PRINTS PR00340 P-II protein signature 23 41 1.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 PRINTS PR00340 P-II protein signature 52 75 1.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 PRINTS PR00340 P-II protein signature 83 103 1.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 PIRSF PIRSF039144 1 112 1.6E-54 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.0E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 Gene3D G3DSA:3.30.70.120 1 112 4.7E-46 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal R615_16700 b2bb80172fd821d1e54b4395bbb3aae0 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 SUPERFAMILY SSF52343 153 279 7.2E-33 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 SUPERFAMILY SSF63380 51 152 5.57E-19 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 303 346 1.1E-4 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 Gene3D G3DSA:2.40.30.10 45 148 1.0E-19 T 12-10-2018 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 SUPERFAMILY SSF54292 268 375 1.7E-16 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00410 Phenol hydroxylase reductase family signature 185 194 2.3E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00410 Phenol hydroxylase reductase family signature 160 179 2.3E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00410 Phenol hydroxylase reductase family signature 244 252 2.3E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00410 Phenol hydroxylase reductase family signature 79 91 2.3E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 Pfam PF00970 Oxidoreductase FAD-binding domain 60 150 1.3E-7 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 Gene3D G3DSA:3.10.20.30 282 375 1.1E-12 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 Gene3D G3DSA:3.40.50.80 151 281 4.1E-35 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 98 105 2.3E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 160 179 2.3E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 79 89 2.3E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 197 208 2.3E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_05575 9cf179f1d5a74319bd2a8a5ed8308902 375 Pfam PF00175 Oxidoreductase NAD-binding domain 161 257 1.1E-16 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 4.6E-15 T 12-10-2018 IPR004176 Clp, N-terminal R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Pfam PF07724 AAA domain (Cdc48 subfamily) 488 649 1.6E-49 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 597 611 3.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 535 553 3.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 493 511 3.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 564 582 3.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Gene3D G3DSA:3.40.50.300 168 357 1.2E-65 T 12-10-2018 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 SUPERFAMILY SSF52540 439 741 8.3E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 SMART SM01086 655 744 5.3E-32 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Gene3D G3DSA:3.40.50.300 441 653 4.2E-82 T 12-10-2018 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Gene3D G3DSA:1.10.1780.10 1 143 1.0E-43 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 SMART SM00382 208 352 1.1E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 SMART SM00382 489 656 3.6E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 655 734 3.1E-22 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Gene3D G3DSA:1.10.8.60 358 440 3.0E-32 T 12-10-2018 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 520 538 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 304 316 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 SUPERFAMILY SSF52540 170 417 8.07E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 318 1.4E-11 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 736 0.0 T 12-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 SUPERFAMILY SSF81923 1 142 3.4E-61 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 R615_08640 d19388d0f6dee6d151bf87ecce7d75ee 752 Gene3D G3DSA:1.10.8.60 655 749 4.3E-29 T 12-10-2018 R615_07235 875f3e90f2e5586366c8cc6799d65f1a 346 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 27 308 5.7E-67 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 R615_07235 875f3e90f2e5586366c8cc6799d65f1a 346 SUPERFAMILY SSF51445 16 305 5.58E-72 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_07235 875f3e90f2e5586366c8cc6799d65f1a 346 Gene3D G3DSA:3.20.20.300 12 341 5.6E-101 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 R615_08305 098de5f14e4bfd09133561e2369fc6f8 217 Gene3D G3DSA:3.90.70.20 35 190 5.1E-9 T 12-10-2018 R615_08305 098de5f14e4bfd09133561e2369fc6f8 217 SUPERFAMILY SSF54001 40 181 5.1E-14 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_08305 098de5f14e4bfd09133561e2369fc6f8 217 Pfam PF03543 Yersinia/Haemophilus virulence surface antigen 18 207 5.9E-15 T 12-10-2018 IPR006473 Peptidase C58, YopT-type domain GO:0004197|GO:0009405 R615_08305 098de5f14e4bfd09133561e2369fc6f8 217 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 35 51 9.6E-6 T 12-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 R615_08305 098de5f14e4bfd09133561e2369fc6f8 217 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 164 184 9.6E-6 T 12-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 Pfam PF00482 Type II secretion system (T2SS), protein F 70 192 2.2E-27 T 12-10-2018 IPR018076 Type II secretion system F domain R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 Pfam PF00482 Type II secretion system (T2SS), protein F 275 394 2.4E-27 T 12-10-2018 IPR018076 Type II secretion system F domain R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 Gene3D G3DSA:1.20.81.30 54 171 4.5E-27 T 12-10-2018 R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 367 381 8.2E-29 T 12-10-2018 IPR003004 GspF/PilC family R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 383 402 8.2E-29 T 12-10-2018 IPR003004 GspF/PilC family R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 164 192 8.2E-29 T 12-10-2018 IPR003004 GspF/PilC family R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 8.2E-29 T 12-10-2018 IPR003004 GspF/PilC family R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 402 1.8E-143 T 12-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 R615_08810 4c4e2dcb9f1425cfd899fefcbf9f9230 403 Gene3D G3DSA:1.20.81.30 256 367 7.3E-24 T 12-10-2018 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 SUPERFAMILY SSF46626 16 98 9.6E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 27 94 5.9E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 Gene3D G3DSA:1.10.760.10 103 200 1.2E-27 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 Gene3D G3DSA:1.10.760.10 21 98 1.1E-26 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 Pfam PF00034 Cytochrome c 120 199 2.1E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 PIRSF PIRSF000005 1 200 3.4E-62 T 12-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 PRINTS PR00605 Class IC cytochrome C signature 73 95 5.0E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 PRINTS PR00605 Class IC cytochrome C signature 31 42 5.0E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 R615_00370 945a4e2c8090dc9fa80a85afaeb18bf4 200 SUPERFAMILY SSF46626 108 198 1.77E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Pfam PF12631 MnmE helical domain 125 461 1.5E-58 T 12-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Gene3D G3DSA:3.30.1360.120 1 123 3.3E-41 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Pfam PF10396 GTP-binding protein TrmE N-terminus 9 122 5.1E-37 T 12-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Pfam PF01926 50S ribosome-binding GTPase 220 345 1.3E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Gene3D G3DSA:1.20.120.430 124 464 1.2E-99 T 12-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 8 464 32.932 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 SUPERFAMILY SSF52540 75 382 2.07E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 218 318 6.0E-19 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 14 464 1.3E-99 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 SUPERFAMILY SSF116878 123 464 5.36E-49 T 12-10-2018 R615_17500 97ca770c8ee3e15b5f6e4431ee45f19c 464 Gene3D G3DSA:3.40.50.300 219 392 1.2E-99 T 12-10-2018 R615_15055 b4f494c4488076d4730473d06dbd8139 858 SMART SM00316 90 151 0.051 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_15055 b4f494c4488076d4730473d06dbd8139 858 SMART SM00316 669 752 6.9E-11 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_15055 b4f494c4488076d4730473d06dbd8139 858 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 85 751 2.4E-234 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 R615_15055 b4f494c4488076d4730473d06dbd8139 858 Pfam PF08206 Ribonuclease B OB domain 97 153 2.4E-20 T 12-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain R615_15055 b4f494c4488076d4730473d06dbd8139 858 SUPERFAMILY SSF50249 229 669 1.37E-142 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_15055 b4f494c4488076d4730473d06dbd8139 858 ProSitePatterns PS01175 Ribonuclease II family signature. 574 598 - T 12-10-2018 IPR022966 Ribonuclease II/R, conserved site R615_15055 b4f494c4488076d4730473d06dbd8139 858 Hamap MF_01895 Ribonuclease R [rnr]. 48 752 55.95 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 R615_15055 b4f494c4488076d4730473d06dbd8139 858 Gene3D G3DSA:2.40.50.140 672 772 2.2E-20 T 12-10-2018 R615_15055 b4f494c4488076d4730473d06dbd8139 858 Pfam PF00773 RNB domain 269 605 8.9E-109 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 R615_15055 b4f494c4488076d4730473d06dbd8139 858 SUPERFAMILY SSF50249 147 246 5.9E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_15055 b4f494c4488076d4730473d06dbd8139 858 TIGRFAM TIGR02063 RNase_R: ribonuclease R 29 752 5.2E-262 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 R615_15055 b4f494c4488076d4730473d06dbd8139 858 SMART SM00955 269 607 2.2E-180 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 R615_15055 b4f494c4488076d4730473d06dbd8139 858 SUPERFAMILY SSF50249 669 751 1.27E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_15055 b4f494c4488076d4730473d06dbd8139 858 SUPERFAMILY SSF50249 78 156 3.28E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_15055 b4f494c4488076d4730473d06dbd8139 858 SMART SM00357 96 154 3.3E-12 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 R615_15055 b4f494c4488076d4730473d06dbd8139 858 Gene3D G3DSA:2.40.50.140 84 157 7.4E-18 T 12-10-2018 R615_15055 b4f494c4488076d4730473d06dbd8139 858 Pfam PF00575 S1 RNA binding domain 668 750 2.3E-10 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_07990 a29d07c147019e7f39c84d3041cb4baa 405 SUPERFAMILY SSF53383 6 400 5.65E-96 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_07990 a29d07c147019e7f39c84d3041cb4baa 405 Pfam PF00155 Aminotransferase class I and II 36 393 1.9E-52 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_07990 a29d07c147019e7f39c84d3041cb4baa 405 Gene3D G3DSA:3.40.640.10 53 294 1.5E-140 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_07990 a29d07c147019e7f39c84d3041cb4baa 405 Gene3D G3DSA:3.90.1150.10 21 398 1.5E-140 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Gene3D G3DSA:1.10.520.10 19 431 2.5E-218 T 12-10-2018 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 SUPERFAMILY SSF48113 436 731 3.98E-106 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Hamap MF_01961 Catalase-peroxidase [katG]. 6 731 39.74 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Gene3D G3DSA:1.10.520.10 432 731 6.3E-141 T 12-10-2018 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 10 731 0.0 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Gene3D G3DSA:1.10.420.10 582 707 6.3E-141 T 12-10-2018 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00458 Haem peroxidase superfamily signature 317 332 1.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00458 Haem peroxidase superfamily signature 258 273 1.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00458 Haem peroxidase superfamily signature 149 166 1.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00458 Haem peroxidase superfamily signature 167 179 1.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00458 Haem peroxidase superfamily signature 89 103 1.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Pfam PF00141 Peroxidase 405 706 2.3E-39 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Pfam PF00141 Peroxidase 67 397 2.4E-49 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 Gene3D G3DSA:1.10.420.20 190 398 2.5E-218 T 12-10-2018 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 ProSitePatterns PS00436 Peroxidases active site signature. 89 100 - T 12-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 SUPERFAMILY SSF48113 16 429 3.54E-151 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 66 91 4.9E-54 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 25 47 4.9E-54 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 266 289 4.9E-54 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 51 64 4.9E-54 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_16395 5fcebc7cbae99123ba9bd419811376d5 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 480 506 4.9E-54 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 R615_05445 53bb983a67c296bbcf45e8d485b43eb2 280 SUPERFAMILY SSF51182 6 279 4.74E-74 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_05445 53bb983a67c296bbcf45e8d485b43eb2 280 Pfam PF05726 Pirin C-terminal cupin domain 179 279 1.1E-28 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 R615_05445 53bb983a67c296bbcf45e8d485b43eb2 280 Gene3D G3DSA:2.60.120.10 142 248 2.2E-86 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_05445 53bb983a67c296bbcf45e8d485b43eb2 280 Gene3D G3DSA:2.60.120.10 17 275 2.2E-86 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_05445 53bb983a67c296bbcf45e8d485b43eb2 280 PIRSF PIRSF006232 2 280 4.8E-88 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 R615_05445 53bb983a67c296bbcf45e8d485b43eb2 280 Pfam PF02678 Pirin 34 120 1.4E-33 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 R615_07270 b1da03261d0b4611b0fc19d9e9dc838d 444 Pfam PF11973 NQRA C-terminal domain 260 309 1.2E-21 T 12-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 R615_07270 b1da03261d0b4611b0fc19d9e9dc838d 444 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 444 1.5E-176 T 12-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 R615_07270 b1da03261d0b4611b0fc19d9e9dc838d 444 Gene3D G3DSA:2.40.50.100 42 87 1.0E-5 T 12-10-2018 R615_07270 b1da03261d0b4611b0fc19d9e9dc838d 444 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 255 3.7E-111 T 12-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 R615_07270 b1da03261d0b4611b0fc19d9e9dc838d 444 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 444 46.117 T 12-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 R615_05020 5604767f58bb4b01f4dac2fa29ba3d2f 729 Pfam PF02706 Chain length determinant protein 10 98 2.3E-12 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 R615_05020 5604767f58bb4b01f4dac2fa29ba3d2f 729 SUPERFAMILY SSF52540 530 714 2.0E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05020 5604767f58bb4b01f4dac2fa29ba3d2f 729 Pfam PF13614 AAA domain 540 670 7.3E-9 T 12-10-2018 IPR025669 AAA domain R615_05020 5604767f58bb4b01f4dac2fa29ba3d2f 729 Pfam PF13807 G-rich domain on putative tyrosine kinase 383 451 7.0E-16 T 12-10-2018 IPR032807 Tyrosine kinase, G-rich domain R615_05020 5604767f58bb4b01f4dac2fa29ba3d2f 729 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 512 714 3.1E-48 T 12-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 R615_05020 5604767f58bb4b01f4dac2fa29ba3d2f 729 Gene3D G3DSA:3.40.50.300 447 725 1.9E-71 T 12-10-2018 R615_16030 e0c54d73ea410eeb229de10e0cfb8516 265 Pfam PF16811 TRAP transporter T-component 19 264 8.2E-82 T 12-10-2018 IPR031823 TRAP transporter T-component R615_16030 e0c54d73ea410eeb229de10e0cfb8516 265 Gene3D G3DSA:1.25.40.920 12 265 3.5E-59 T 12-10-2018 IPR038537 TatT superfamily R615_12725 4c4810596e0357073809e3727ccebce4 272 TIGRFAM TIGR00444 mazG: MazG family protein 14 268 1.1E-92 T 12-10-2018 IPR011551 NTP pyrophosphohydrolase MazG R615_12725 4c4810596e0357073809e3727ccebce4 272 SUPERFAMILY SSF101386 149 247 1.96E-23 T 12-10-2018 R615_12725 4c4810596e0357073809e3727ccebce4 272 Gene3D G3DSA:1.10.287.1080 144 271 5.7E-42 T 12-10-2018 R615_12725 4c4810596e0357073809e3727ccebce4 272 SUPERFAMILY SSF101386 5 105 3.27E-24 T 12-10-2018 R615_12725 4c4810596e0357073809e3727ccebce4 272 Gene3D G3DSA:1.10.287.1080 4 137 2.3E-43 T 12-10-2018 R615_12725 4c4810596e0357073809e3727ccebce4 272 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 4.6E-26 T 12-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core R615_12725 4c4810596e0357073809e3727ccebce4 272 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 180 238 1.6E-4 T 12-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 SUPERFAMILY SSF56655 1 255 2.23E-39 T 12-10-2018 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 Pfam PF00459 Inositol monophosphatase family 1 253 9.5E-27 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 Gene3D G3DSA:3.30.540.10 1 140 2.4E-24 T 12-10-2018 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 Gene3D G3DSA:3.40.190.80 144 257 1.1E-15 T 12-10-2018 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 9.5E-25 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 9.5E-25 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 9.5E-25 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 9.5E-25 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 9.5E-25 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_12670 6395cab89db1e4eb197561a7cd6403f7 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 9.5E-25 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_07685 831f79b03b42d784589103daf88c8d50 283 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 9 270 56.767 T 12-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 R615_07685 831f79b03b42d784589103daf88c8d50 283 PIRSF PIRSF004976 3 275 4.6E-74 T 12-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 R615_07685 831f79b03b42d784589103daf88c8d50 283 Pfam PF01171 PP-loop family 41 203 2.8E-14 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 R615_07685 831f79b03b42d784589103daf88c8d50 283 Gene3D G3DSA:3.40.50.620 2 267 2.1E-49 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_07685 831f79b03b42d784589103daf88c8d50 283 SUPERFAMILY SSF52402 16 234 2.05E-56 T 12-10-2018 R615_13840 aba5402ca370bc92b3457cb605b18675 404 Gene3D G3DSA:3.40.50.10540 4 386 2.5E-109 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily R615_13840 aba5402ca370bc92b3457cb605b18675 404 Gene3D G3DSA:3.30.1540.10 228 321 2.5E-109 T 12-10-2018 R615_13840 aba5402ca370bc92b3457cb605b18675 404 SUPERFAMILY SSF89796 1 392 2.22E-116 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily R615_13840 aba5402ca370bc92b3457cb605b18675 404 Pfam PF02515 CoA-transferase family III 5 369 1.4E-99 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 R615_13715 274587145e4eb86aca47cac2a76fe205 323 Gene3D G3DSA:2.40.30.170 34 262 1.4E-42 T 12-10-2018 R615_13715 274587145e4eb86aca47cac2a76fe205 323 Pfam PF13437 HlyD family secretion protein 183 286 2.8E-13 T 12-10-2018 R615_13715 274587145e4eb86aca47cac2a76fe205 323 SUPERFAMILY SSF111369 37 256 3.66E-14 T 12-10-2018 R615_13715 274587145e4eb86aca47cac2a76fe205 323 Gene3D G3DSA:1.10.287.470 77 182 1.4E-42 T 12-10-2018 R615_13715 274587145e4eb86aca47cac2a76fe205 323 Pfam PF13533 Biotin-lipoyl like 44 89 2.5E-11 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain R615_13715 274587145e4eb86aca47cac2a76fe205 323 Gene3D G3DSA:2.40.50.100 43 217 1.4E-42 T 12-10-2018 R615_05365 3dee61b5de91f179db9b080371bbd390 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 192 353 8.3E-52 T 12-10-2018 IPR000160 GGDEF domain R615_05365 3dee61b5de91f179db9b080371bbd390 363 SUPERFAMILY SSF55073 201 353 6.98E-47 T 12-10-2018 IPR029787 Nucleotide cyclase R615_05365 3dee61b5de91f179db9b080371bbd390 363 Gene3D G3DSA:3.30.70.270 181 355 1.6E-56 T 12-10-2018 R615_05365 3dee61b5de91f179db9b080371bbd390 363 SMART SM00267 185 354 9.6E-60 T 12-10-2018 IPR000160 GGDEF domain R615_05365 3dee61b5de91f179db9b080371bbd390 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 196 350 6.6E-45 T 12-10-2018 IPR000160 GGDEF domain R615_05615 2062fb5b4ba06775106cc4282170a278 359 SUPERFAMILY SSF53850 60 274 6.05E-43 T 12-10-2018 R615_05615 2062fb5b4ba06775106cc4282170a278 359 Gene3D G3DSA:3.40.190.10 169 359 1.3E-25 T 12-10-2018 R615_05615 2062fb5b4ba06775106cc4282170a278 359 Gene3D G3DSA:3.40.190.10 60 168 1.6E-10 T 12-10-2018 R615_05615 2062fb5b4ba06775106cc4282170a278 359 Pfam PF09084 NMT1/THI5 like 77 272 6.0E-19 T 12-10-2018 IPR015168 SsuA/THI5-like R615_05615 2062fb5b4ba06775106cc4282170a278 359 SMART SM00062 61 275 0.0019 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_05775 3e100612899a8d53eb513b698dfe0807 335 SUPERFAMILY SSF143422 16 191 1.18E-20 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_05775 3e100612899a8d53eb513b698dfe0807 335 SMART SM01321 12 186 2.7E-5 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_14730 be3338ee44fe23f42922f4c9c3fc6c7d 119 PIRSF PIRSF028141 1 118 4.1E-29 T 12-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type R615_14730 be3338ee44fe23f42922f4c9c3fc6c7d 119 Gene3D G3DSA:2.40.10.220 1 118 1.5E-28 T 12-10-2018 R615_14730 be3338ee44fe23f42922f4c9c3fc6c7d 119 Pfam PF07238 PilZ domain 2 98 2.7E-12 T 12-10-2018 IPR009875 PilZ domain GO:0035438 R615_14730 be3338ee44fe23f42922f4c9c3fc6c7d 119 SUPERFAMILY SSF141371 1 116 2.71E-22 T 12-10-2018 R615_07400 c324f1c6bad548514745e17fdbe9cded 575 SUPERFAMILY SSF69279 23 181 2.59E-15 T 12-10-2018 R615_07400 c324f1c6bad548514745e17fdbe9cded 575 SUPERFAMILY SSF69255 368 445 5.75E-17 T 12-10-2018 R615_07400 c324f1c6bad548514745e17fdbe9cded 575 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 31 488 3.9E-47 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein R615_07400 c324f1c6bad548514745e17fdbe9cded 575 Pfam PF05954 Phage late control gene D protein (GPD) 67 333 4.1E-11 T 12-10-2018 R615_07400 c324f1c6bad548514745e17fdbe9cded 575 SUPERFAMILY SSF69349 435 575 2.04E-5 T 12-10-2018 R615_07400 c324f1c6bad548514745e17fdbe9cded 575 Gene3D G3DSA:2.40.50.230 354 449 5.7E-13 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 SUPERFAMILY SSF52172 3 136 6.83E-14 T 12-10-2018 IPR011006 CheY-like superfamily R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 Gene3D G3DSA:3.40.50.2300 6 129 2.2E-10 T 12-10-2018 R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 SMART SM00267 126 302 4.7E-70 T 12-10-2018 IPR000160 GGDEF domain R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 Pfam PF00072 Response regulator receiver domain 9 120 3.4E-5 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 Gene3D G3DSA:3.30.70.270 130 300 3.0E-59 T 12-10-2018 R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 133 300 1.7E-51 T 12-10-2018 IPR000160 GGDEF domain R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 SUPERFAMILY SSF55073 142 299 1.26E-48 T 12-10-2018 IPR029787 Nucleotide cyclase R615_12130 d08393df5f6dc6260a0c4eae60e7ea12 315 Pfam PF00990 Diguanylate cyclase, GGDEF domain 138 298 6.0E-51 T 12-10-2018 IPR000160 GGDEF domain R615_12945 bac819f7a5287981400f5fd9dfddef4c 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 231 1.5E-12 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_12945 bac819f7a5287981400f5fd9dfddef4c 243 Gene3D G3DSA:3.40.190.10 43 230 6.4E-15 T 12-10-2018 R615_12945 bac819f7a5287981400f5fd9dfddef4c 243 Gene3D G3DSA:3.40.190.10 104 194 6.4E-15 T 12-10-2018 R615_12945 bac819f7a5287981400f5fd9dfddef4c 243 SUPERFAMILY SSF53850 19 231 7.35E-22 T 12-10-2018 R615_06300 6b450ada0f5f54067fe161ab34a7985b 360 PIRSF PIRSF000390 1 360 1.2E-105 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase R615_06300 6b450ada0f5f54067fe161ab34a7985b 360 Gene3D G3DSA:3.90.1150.10 244 360 2.0E-31 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_06300 6b450ada0f5f54067fe161ab34a7985b 360 SUPERFAMILY SSF53383 13 358 1.61E-112 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_06300 6b450ada0f5f54067fe161ab34a7985b 360 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 357 1.6E-122 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase R615_06300 6b450ada0f5f54067fe161ab34a7985b 360 Gene3D G3DSA:3.40.640.10 1 242 1.7E-95 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_02850 0016d1c9999dfa9581475e731b4fd393 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 2.3E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02850 0016d1c9999dfa9581475e731b4fd393 155 SUPERFAMILY SSF54523 8 121 6.36E-7 T 12-10-2018 R615_02850 0016d1c9999dfa9581475e731b4fd393 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02850 0016d1c9999dfa9581475e731b4fd393 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 27 4.5E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02850 0016d1c9999dfa9581475e731b4fd393 155 Gene3D G3DSA:3.30.700.10 8 149 1.2E-6 T 12-10-2018 R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 SUPERFAMILY SSF51735 140 316 8.1E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 SMART SM01003 4 139 1.7E-63 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 138 1.8E-44 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 Gene3D G3DSA:3.40.50.720 139 320 9.5E-139 T 12-10-2018 R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 12-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 Gene3D G3DSA:3.40.50.720 3 365 9.5E-139 T 12-10-2018 R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 368 2.4E-70 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 SUPERFAMILY SSF52283 1 170 1.11E-52 T 12-10-2018 R615_10370 7186edb9a35751af4fcbb4e4c6f3ac55 378 SMART SM01002 148 313 3.1E-76 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain R615_00605 6d7064c5700673baf7034ce297a75520 173 Gene3D G3DSA:3.90.45.10 1 168 2.7E-64 T 12-10-2018 IPR036821 Peptide deformylase superfamily R615_00605 6d7064c5700673baf7034ce297a75520 173 Hamap MF_00163 Peptide deformylase [def]. 2 163 30.376 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 PIRSF PIRSF004749 1 172 2.8E-57 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 Pfam PF01327 Polypeptide deformylase 4 153 1.3E-53 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 SUPERFAMILY SSF56420 2 165 1.44E-62 T 12-10-2018 IPR036821 Peptide deformylase superfamily R615_00605 6d7064c5700673baf7034ce297a75520 173 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 9.4E-58 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 PRINTS PR01576 Peptide deformylase signature 121 150 1.5E-35 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 PRINTS PR01576 Peptide deformylase signature 90 101 1.5E-35 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 PRINTS PR01576 Peptide deformylase signature 102 120 1.5E-35 T 12-10-2018 IPR023635 Peptide deformylase R615_00605 6d7064c5700673baf7034ce297a75520 173 PRINTS PR01576 Peptide deformylase signature 33 62 1.5E-35 T 12-10-2018 IPR023635 Peptide deformylase R615_13340 dffec02c39c16f2b916e8ba09390c162 281 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.8E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_13340 dffec02c39c16f2b916e8ba09390c162 281 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.8E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_13340 dffec02c39c16f2b916e8ba09390c162 281 SUPERFAMILY SSF46785 20 89 4.05E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_13340 dffec02c39c16f2b916e8ba09390c162 281 Gene3D G3DSA:1.10.10.10 16 93 2.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_13340 dffec02c39c16f2b916e8ba09390c162 281 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 85 5.2E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_13340 dffec02c39c16f2b916e8ba09390c162 281 SMART SM00345 26 85 4.0E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 TIGRFAM TIGR00492 alr: alanine racemase 8 355 5.9E-99 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 Hamap MF_01201 Alanine racemase. 2 355 32.102 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 Pfam PF00842 Alanine racemase, C-terminal domain 231 353 7.9E-43 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 SUPERFAMILY SSF51419 11 232 8.64E-60 T 12-10-2018 IPR029066 PLP-binding barrel R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 Gene3D G3DSA:2.40.37.10 216 353 1.6E-115 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 SMART SM01005 231 355 2.0E-64 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 155 166 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 121 133 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 285 302 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 264 279 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 61 79 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 337 350 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 190 217 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 247 262 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 PRINTS PR00992 Alanine racemase signature 26 42 4.9E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 Pfam PF01168 Alanine racemase, N-terminal domain 12 217 6.0E-56 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 SUPERFAMILY SSF50621 225 355 6.63E-47 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 R615_15595 14ff24df45bcaf4d3533a03fed42f52b 356 Gene3D G3DSA:3.20.20.10 12 215 1.6E-115 T 12-10-2018 IPR029066 PLP-binding barrel R615_01295 05e1414cb9f988fd9437dfeab98b0ec3 123 Gene3D G3DSA:3.40.50.1000 1 123 1.1E-37 T 12-10-2018 IPR023214 HAD superfamily R615_01295 05e1414cb9f988fd9437dfeab98b0ec3 123 TIGRFAM TIGR01689 EcbF-BcbF: capsule biosynthesis phosphatase 1 123 1.7E-58 T 12-10-2018 IPR010039 Capsule biosynthesis phosphatase R615_01295 05e1414cb9f988fd9437dfeab98b0ec3 123 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 2 109 2.3E-10 T 12-10-2018 IPR010033 HAD-superfamily phosphatase, subfamily IIIC R615_01295 05e1414cb9f988fd9437dfeab98b0ec3 123 SUPERFAMILY SSF56784 1 112 1.26E-21 T 12-10-2018 IPR036412 HAD-like superfamily R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 SUPERFAMILY SSF51306 75 266 3.09E-61 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 Pfam PF00717 Peptidase S24-like 83 164 1.5E-20 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 Gene3D G3DSA:2.170.230.10 151 219 8.6E-63 T 12-10-2018 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 ProSitePatterns PS00761 Signal peptidases I signature 3. 225 238 - T 12-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 77 93 8.7E-23 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 140 152 8.7E-23 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 220 239 8.7E-23 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 62 259 7.9E-46 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 Pfam PF10502 Signal peptidase, peptidase S26 216 258 1.7E-5 T 12-10-2018 IPR019533 Peptidase S26 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 ProSitePatterns PS00760 Signal peptidases I lysine active site. 142 154 - T 12-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 R615_11885 f07eb81f47192eb80bee6bdfa50ab3de 276 Gene3D G3DSA:2.10.109.10 75 260 8.6E-63 T 12-10-2018 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SMART SM00260 537 677 3.6E-35 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SMART SM00073 5 102 2.8E-26 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Gene3D G3DSA:2.30.30.40 545 673 8.6E-38 T 12-10-2018 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Gene3D G3DSA:1.20.120.160 1 143 8.4E-40 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SUPERFAMILY SSF55874 363 543 1.44E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Gene3D G3DSA:3.30.565.10 360 544 6.7E-57 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Pfam PF01627 Hpt domain 9 107 1.2E-17 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 296 359 2.3E-18 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Gene3D G3DSA:2.40.50.180 568 632 8.6E-38 T 12-10-2018 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 499 1.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 542 1.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 463 1.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 523 1.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SUPERFAMILY SSF47384 297 360 1.69E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 407 544 2.5E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SMART SM00387 404 545 9.0E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Gene3D G3DSA:1.10.287.560 296 359 1.7E-18 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SMART SM01231 296 359 6.3E-22 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 Pfam PF01584 CheW-like domain 552 676 9.3E-25 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SUPERFAMILY SSF47226 5 127 9.07E-31 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05135 191c089a1e90c8d46d6c3e42beadbf28 694 SUPERFAMILY SSF50341 544 676 5.1E-29 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_09250 0a62c12103d8946a45b9f1dccc819f57 790 Pfam PF07631 Protein of unknown function (DUF1592) 453 579 2.1E-41 T 12-10-2018 IPR013042 Domain of unknown function DUF1592 R615_09250 0a62c12103d8946a45b9f1dccc819f57 790 Pfam PF07624 Protein of unknown function (DUF1585) 709 782 7.0E-26 T 12-10-2018 IPR011478 Domain of unknown function DUF1585 R615_09250 0a62c12103d8946a45b9f1dccc819f57 790 Pfam PF07637 Protein of unknown function (DUF1595) 378 438 1.2E-18 T 12-10-2018 IPR013043 Domain of unknown function DUF1595 R615_09250 0a62c12103d8946a45b9f1dccc819f57 790 Pfam PF07627 Protein of unknown function (DUF1588) 598 695 6.8E-33 T 12-10-2018 IPR013039 Domain of unknown function DUF1588 R615_09250 0a62c12103d8946a45b9f1dccc819f57 790 Pfam PF07626 Protein of unknown function (DUF1587) 119 182 5.2E-25 T 12-10-2018 IPR013036 Domain of unknown function DUF1587 R615_12650 996b4ebe3804f654df400c04f518e82c 387 Gene3D G3DSA:3.90.1150.10 5 380 3.3E-147 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_12650 996b4ebe3804f654df400c04f518e82c 387 Pfam PF00266 Aminotransferase class-V 5 372 7.2E-80 T 12-10-2018 IPR000192 Aminotransferase class V domain R615_12650 996b4ebe3804f654df400c04f518e82c 387 SUPERFAMILY SSF53383 4 381 4.52E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_12650 996b4ebe3804f654df400c04f518e82c 387 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 201 220 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site R615_12650 996b4ebe3804f654df400c04f518e82c 387 PIRSF PIRSF005572 1 387 3.4E-121 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 R615_12650 996b4ebe3804f654df400c04f518e82c 387 Gene3D G3DSA:3.40.640.10 15 266 3.3E-147 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_04165 4fa94d08c858be5b555d147323b68ca4 301 Pfam PF01207 Dihydrouridine synthase (Dus) 2 292 1.7E-68 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_04165 4fa94d08c858be5b555d147323b68ca4 301 PIRSF PIRSF006621 1 301 2.9E-67 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_04165 4fa94d08c858be5b555d147323b68ca4 301 Gene3D G3DSA:3.20.20.70 1 230 4.1E-68 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04165 4fa94d08c858be5b555d147323b68ca4 301 SUPERFAMILY SSF51395 3 298 2.81E-59 T 12-10-2018 R615_04165 4fa94d08c858be5b555d147323b68ca4 301 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 81 99 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_04165 4fa94d08c858be5b555d147323b68ca4 301 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 1 298 45.426 T 12-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 R615_13515 8bed9162683a5f7bae104227ffdc91a7 200 SUPERFAMILY SSF52833 1 197 1.7E-65 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_13515 8bed9162683a5f7bae104227ffdc91a7 200 PIRSF PIRSF000239 1 199 6.7E-57 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_13515 8bed9162683a5f7bae104227ffdc91a7 200 Gene3D G3DSA:3.40.30.10 1 197 3.6E-70 T 12-10-2018 R615_13515 8bed9162683a5f7bae104227ffdc91a7 200 Pfam PF00578 AhpC/TSA family 5 139 7.4E-33 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_13515 8bed9162683a5f7bae104227ffdc91a7 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 2.3E-13 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 1.4E-93 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 Gene3D G3DSA:3.10.310.10 5 271 6.4E-101 T 12-10-2018 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 SUPERFAMILY SSF54506 3 274 3.7E-59 T 12-10-2018 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 Gene3D G3DSA:3.10.310.10 117 263 6.4E-101 T 12-10-2018 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 39.413 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 Pfam PF01678 Diaminopimelate epimerase 5 125 1.1E-35 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 Pfam PF01678 Diaminopimelate epimerase 155 268 2.2E-26 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 R615_01185 9abbaa389c7477d4e8f1466f499b36c7 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 12-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 R615_15430 9431092c936d065e182621698fba326d 277 SUPERFAMILY SSF56059 80 229 1.23E-23 T 12-10-2018 R615_15430 9431092c936d065e182621698fba326d 277 Pfam PF08443 RimK-like ATP-grasp domain 74 235 3.4E-13 T 12-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 R615_15430 9431092c936d065e182621698fba326d 277 Gene3D G3DSA:3.30.470.20 149 253 1.7E-15 T 12-10-2018 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Gene3D G3DSA:2.40.30.20 2 94 1.5E-32 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 SUPERFAMILY SSF50615 11 95 5.1E-28 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 49.288 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Gene3D G3DSA:1.20.150.20 384 514 2.8E-46 T 12-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 27 93 2.5E-14 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 8.3E-71 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Gene3D G3DSA:3.40.50.300 95 383 4.8E-127 T 12-10-2018 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 SUPERFAMILY SSF47917 384 512 2.15E-43 T 12-10-2018 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 513 9.0E-245 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 SUPERFAMILY SSF52540 97 382 9.23E-93 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17315 adf47491bdf8f7456501c10f6442e4fc 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 1.0E-42 T 12-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 TIGRFAM TIGR00874 talAB: transaldolase 3 314 1.6E-147 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 ProSitePatterns PS00958 Transaldolase active site. 127 144 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 SUPERFAMILY SSF51569 1 314 7.85E-113 T 12-10-2018 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 Hamap MF_00492 Transaldolase [tal]. 1 316 49.976 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 13 311 1.3E-103 T 12-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 R615_08590 a256b9d314e696a79ae4079bed3b19f5 316 Gene3D G3DSA:3.20.20.70 1 315 6.4E-138 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:1.20.1640.10 502 1022 3.8E-238 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:1.20.1640.10 11 501 3.8E-238 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 SUPERFAMILY SSF82866 799 1027 6.67E-43 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 SUPERFAMILY SSF82693 42 131 2.14E-12 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Pfam PF00873 AcrB/AcrD/AcrF family 6 1023 3.4E-149 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 SUPERFAMILY SSF82714 725 800 5.75E-10 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:3.30.70.1430 41 813 3.8E-238 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 PRINTS PR00702 Acriflavin resistance protein family signature 325 348 2.4E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 PRINTS PR00702 Acriflavin resistance protein family signature 432 455 2.4E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 PRINTS PR00702 Acriflavin resistance protein family signature 379 403 2.4E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 2.4E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 2.4E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 PRINTS PR00702 Acriflavin resistance protein family signature 457 480 2.4E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 SUPERFAMILY SSF82714 180 260 6.67E-10 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:3.30.70.1430 559 670 3.8E-238 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:3.30.2090.10 718 805 3.8E-238 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:3.30.70.1440 671 862 3.8E-238 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:3.30.2090.10 176 268 3.8E-238 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15800 bb72a554bac0be4014d783766e1a9895 1088 SUPERFAMILY SSF82866 288 481 4.97E-36 T 12-10-2018 R615_15800 bb72a554bac0be4014d783766e1a9895 1088 Gene3D G3DSA:3.30.70.1320 134 319 3.8E-238 T 12-10-2018 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 SUPERFAMILY SSF51905 4 426 5.19E-73 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 SUPERFAMILY SSF56425 239 358 5.23E-42 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 Gene3D G3DSA:4.10.80.40 550 590 8.8E-23 T 12-10-2018 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 Pfam PF02910 Fumarate reductase flavoprotein C-term 462 590 1.4E-35 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 Pfam PF00890 FAD binding domain 10 407 2.1E-118 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 44 53 - T 12-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 Gene3D G3DSA:1.20.58.100 433 549 1.1E-36 T 12-10-2018 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 8 590 1.1E-285 T 12-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 Gene3D G3DSA:3.90.700.10 249 352 2.7E-161 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 10 590 2.1E-244 T 12-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 Gene3D G3DSA:3.50.50.60 10 418 2.7E-161 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 PIRSF PIRSF000171 1 581 9.2E-48 T 12-10-2018 R615_10010 932c228a8bcf0075c424ce82cc989b6d 590 SUPERFAMILY SSF46977 455 590 1.44E-44 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_06435 4b0ee51f4b450134d9fed75bf93c16cc 304 SMART SM00267 135 301 3.1E-22 T 12-10-2018 IPR000160 GGDEF domain R615_06435 4b0ee51f4b450134d9fed75bf93c16cc 304 Pfam PF00990 Diguanylate cyclase, GGDEF domain 147 298 1.0E-27 T 12-10-2018 IPR000160 GGDEF domain R615_06435 4b0ee51f4b450134d9fed75bf93c16cc 304 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 297 9.8E-27 T 12-10-2018 IPR000160 GGDEF domain R615_06435 4b0ee51f4b450134d9fed75bf93c16cc 304 Gene3D G3DSA:3.30.70.270 131 300 1.6E-31 T 12-10-2018 R615_06435 4b0ee51f4b450134d9fed75bf93c16cc 304 SUPERFAMILY SSF55073 151 297 4.39E-25 T 12-10-2018 IPR029787 Nucleotide cyclase R615_06735 29c85443df38f508e3759b03308f1d2b 791 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 784 45.541 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Pfam PF03483 B3/4 domain 211 384 1.4E-68 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Pfam PF03147 Ferredoxin-fold anticodon binding domain 697 790 2.7E-28 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SMART SM00873 211 384 2.1E-95 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Gene3D G3DSA:3.30.70.380 698 790 2.4E-29 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Gene3D G3DSA:3.30.56.10 4 179 1.3E-73 T 12-10-2018 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SUPERFAMILY SSF56037 198 394 3.14E-73 T 12-10-2018 R615_06735 29c85443df38f508e3759b03308f1d2b 791 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 790 3.1E-265 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Gene3D G3DSA:3.30.930.10 487 686 1.4E-60 T 12-10-2018 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SUPERFAMILY SSF46955 404 474 3.57E-16 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_06735 29c85443df38f508e3759b03308f1d2b 791 Gene3D G3DSA:2.40.50.140 39 153 1.3E-73 T 12-10-2018 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SUPERFAMILY SSF54991 692 790 8.76E-30 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Gene3D G3DSA:3.30.56.10 402 475 6.5E-23 T 12-10-2018 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SUPERFAMILY SSF50249 38 189 6.12E-48 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06735 29c85443df38f508e3759b03308f1d2b 791 Gene3D G3DSA:3.50.40.10 197 394 2.5E-80 T 12-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SMART SM00896 697 790 1.6E-41 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SUPERFAMILY SSF55681 466 685 2.04E-52 T 12-10-2018 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Pfam PF03484 tRNA synthetase B5 domain 406 470 6.7E-18 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 R615_06735 29c85443df38f508e3759b03308f1d2b 791 SMART SM00874 402 470 3.1E-25 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 R615_06735 29c85443df38f508e3759b03308f1d2b 791 Pfam PF01588 Putative tRNA binding domain 45 144 1.2E-23 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 46 771 6.9E-179 T 12-10-2018 R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 SUPERFAMILY SSF56601 192 820 6.2E-129 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 Pfam PF00905 Penicillin binding protein transpeptidase domain 430 605 2.3E-24 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 Gene3D G3DSA:1.10.3810.10 30 224 1.0E-73 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 Gene3D G3DSA:3.40.710.10 225 314 3.7E-11 T 12-10-2018 R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 Pfam PF00912 Transglycosylase 38 210 8.9E-63 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 SUPERFAMILY SSF53955 24 236 1.46E-73 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_15270 e23eef1bc645ee9dea960386f5b92dbc 841 Pfam PF17092 Penicillin-binding protein OB-like domain 332 428 4.3E-14 T 12-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 Pfam PF00732 GMC oxidoreductase 44 321 4.0E-8 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 Gene3D G3DSA:3.50.50.60 44 515 6.9E-148 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 SUPERFAMILY SSF54373 337 462 1.96E-10 T 12-10-2018 R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 Pfam PF05199 GMC oxidoreductase 449 510 5.3E-15 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 Gene3D G3DSA:3.30.410.10 176 456 6.9E-148 T 12-10-2018 R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 27 2.3E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 3 25 8.8E-6 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal R615_00395 ba82f6253a4386b84fd5ad257776bbf4 519 SUPERFAMILY SSF51905 44 516 1.62E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_04310 ec3ab5f537fd6bd308dc859b1de94f41 468 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 14 445 3.2E-220 T 12-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 R615_04310 ec3ab5f537fd6bd308dc859b1de94f41 468 Gene3D G3DSA:3.20.20.70 144 451 2.7E-148 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04310 ec3ab5f537fd6bd308dc859b1de94f41 468 Gene3D G3DSA:2.30.170.30 4 56 5.7E-21 T 12-10-2018 R615_04310 ec3ab5f537fd6bd308dc859b1de94f41 468 Gene3D G3DSA:1.10.220.70 57 143 7.1E-34 T 12-10-2018 R615_04310 ec3ab5f537fd6bd308dc859b1de94f41 468 PIRSF PIRSF018788 3 461 4.9E-235 T 12-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 R615_03915 5403a19dc700ed1a15935bf201f0de11 98 SUPERFAMILY SSF54285 4 81 6.67E-23 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp R615_03915 5403a19dc700ed1a15935bf201f0de11 98 Gene3D G3DSA:3.10.20.280 1 90 5.6E-32 T 12-10-2018 IPR037021 RnfH superfamily R615_03915 5403a19dc700ed1a15935bf201f0de11 98 Pfam PF03658 RnfH family Ubiquitin 5 88 8.5E-33 T 12-10-2018 IPR005346 RnfH protein R615_03915 5403a19dc700ed1a15935bf201f0de11 98 Hamap MF_00460 Protein RnfH [rnfH]. 5 97 24.164 T 12-10-2018 IPR005346 RnfH protein R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 Pfam PF02785 Biotin carboxylase C-terminal domain 334 439 5.1E-39 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 1.2E-41 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 Gene3D G3DSA:3.30.470.130 1 448 6.2E-186 T 12-10-2018 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 320 8.5E-74 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 SUPERFAMILY SSF51246 329 446 2.41E-41 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 SUPERFAMILY SSF52440 1 112 1.73E-42 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 SUPERFAMILY SSF56059 82 346 7.42E-68 T 12-10-2018 R615_14930 fd14183c0ba6d380afcb0e8d23fcbca1 471 SMART SM00878 334 440 1.9E-58 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 Pfam PF07650 KH domain 39 110 1.3E-18 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 SUPERFAMILY SSF54814 2 106 4.71E-37 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.283 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 12-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 SUPERFAMILY SSF54821 108 206 2.35E-40 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.1E-40 T 12-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 Gene3D G3DSA:3.30.1140.32 108 208 1.2E-44 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.8E-96 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 SMART SM00322 60 125 3.5E-6 T 12-10-2018 IPR004087 K Homology domain GO:0003676 R615_16150 2bd0065dceb599d589bbc03bf34f8fd1 229 Gene3D G3DSA:3.30.300.20 18 107 6.8E-27 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_16670 478bd6c263bcca00806960b36da583c6 420 SUPERFAMILY SSF50249 48 125 1.67E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_16670 478bd6c263bcca00806960b36da583c6 420 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 2.3E-31 T 12-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 R615_16670 478bd6c263bcca00806960b36da583c6 420 Gene3D G3DSA:3.40.50.300 130 417 5.7E-131 T 12-10-2018 R615_16670 478bd6c263bcca00806960b36da583c6 420 SUPERFAMILY SSF52540 90 371 1.69E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16670 478bd6c263bcca00806960b36da583c6 420 Gene3D G3DSA:2.40.50.140 48 117 1.8E-34 T 12-10-2018 R615_16670 478bd6c263bcca00806960b36da583c6 420 SMART SM00382 170 355 1.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_16670 478bd6c263bcca00806960b36da583c6 420 SUPERFAMILY SSF68912 1 46 1.88E-12 T 12-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily R615_16670 478bd6c263bcca00806960b36da583c6 420 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 245.4 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 R615_16670 478bd6c263bcca00806960b36da583c6 420 SMART SM00959 5 47 4.5E-18 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 R615_16670 478bd6c263bcca00806960b36da583c6 420 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.4E-24 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_16670 478bd6c263bcca00806960b36da583c6 420 Gene3D G3DSA:1.10.720.10 1 47 8.7E-21 T 12-10-2018 R615_16670 478bd6c263bcca00806960b36da583c6 420 SMART SM00357 52 118 5.3E-18 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 R615_16670 478bd6c263bcca00806960b36da583c6 420 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 3.5E-17 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 R615_16670 478bd6c263bcca00806960b36da583c6 420 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 7.4E-215 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 R615_14295 cd1804e6caa121daedf34c278126bb4d 644 SUPERFAMILY SSF48029 426 635 5.49E-31 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical R615_14295 cd1804e6caa121daedf34c278126bb4d 644 Gene3D G3DSA:1.10.220.30 414 501 1.3E-11 T 12-10-2018 R615_14295 cd1804e6caa121daedf34c278126bb4d 644 Pfam PF01706 FliG C-terminal domain 528 634 7.8E-16 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal R615_14295 cd1804e6caa121daedf34c278126bb4d 644 Pfam PF14841 FliG middle domain 426 496 3.2E-10 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain R615_14295 cd1804e6caa121daedf34c278126bb4d 644 Pfam PF08345 Flagellar M-ring protein C-terminal 54 227 6.3E-6 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal R615_14295 cd1804e6caa121daedf34c278126bb4d 644 Gene3D G3DSA:1.10.220.30 506 639 1.9E-21 T 12-10-2018 R615_10680 53ed8b409b987f81d71425536986c112 399 Gene3D G3DSA:2.130.10.10 18 345 2.9E-11 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_10680 53ed8b409b987f81d71425536986c112 399 SUPERFAMILY SSF50969 19 249 4.47E-9 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like R615_03865 6e92733712aa5ca9ccfc956ee1e95b3f 422 Pfam PF07804 HipA-like C-terminal domain 152 391 4.3E-51 T 12-10-2018 IPR012893 HipA-like, C-terminal R615_03865 6e92733712aa5ca9ccfc956ee1e95b3f 422 Pfam PF13657 HipA N-terminal domain 13 119 1.7E-16 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 R615_03865 6e92733712aa5ca9ccfc956ee1e95b3f 422 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 13 118 2.0E-9 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 R615_03865 6e92733712aa5ca9ccfc956ee1e95b3f 422 Gene3D G3DSA:1.10.1070.20 250 364 3.5E-5 T 12-10-2018 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SMART SM01096 424 547 8.2E-76 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Gene3D G3DSA:1.10.1030.10 404 553 2.6E-49 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1051 0.0 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Gene3D G3DSA:3.40.50.20 554 662 4.5E-50 T 12-10-2018 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.418 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 875 8.8E-32 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.1E-73 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SMART SM00851 955 1041 1.0E-34 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SUPERFAMILY SSF56059 673 933 1.45E-103 T 12-10-2018 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Pfam PF02142 MGS-like domain 955 1041 1.6E-18 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SUPERFAMILY SSF52440 1 127 4.75E-50 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SUPERFAMILY SSF48108 396 554 1.02E-52 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 4.9E-39 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Gene3D G3DSA:3.40.50.1380 936 1072 5.6E-40 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SUPERFAMILY SSF56059 128 401 3.01E-110 T 12-10-2018 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SUPERFAMILY SSF52440 556 675 4.03E-49 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.1E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 SUPERFAMILY SSF52335 937 1070 1.03E-40 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Gene3D G3DSA:3.40.50.20 1 116 1.2E-50 T 12-10-2018 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.171 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Gene3D G3DSA:3.30.470.20 119 403 4.5E-132 T 12-10-2018 R615_03970 b1a8fae395936e7dce768c2a99608a28 1072 Gene3D G3DSA:3.30.470.20 665 935 3.3E-119 T 12-10-2018 R615_13980 618cb90c13bc8d3896e8bb139dded9ee 64 Pfam PF03884 DNA gyrase inhibitor YacG 3 50 5.4E-25 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 R615_13980 618cb90c13bc8d3896e8bb139dded9ee 64 Gene3D G3DSA:3.30.50.10 1 61 1.1E-22 T 12-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 R615_13980 618cb90c13bc8d3896e8bb139dded9ee 64 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 59 17.108 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 R615_13980 618cb90c13bc8d3896e8bb139dded9ee 64 SUPERFAMILY SSF57716 2 51 6.84E-20 T 12-10-2018 R615_12420 973dcca1c5250778eb8d4f3773f81eff 176 Pfam PF06945 Protein of unknown function (DUF1289) 12 58 1.4E-14 T 12-10-2018 IPR010710 Protein of unknown function DUF1289 R615_08750 e5705036067c94d8d8950b9630da3cdb 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 9.4E-19 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 R615_08750 e5705036067c94d8d8950b9630da3cdb 182 PIRSF PIRSF000847 1 182 4.2E-45 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 R615_08750 e5705036067c94d8d8950b9630da3cdb 182 Gene3D G3DSA:1.20.120.1760 2 177 8.8E-16 T 12-10-2018 R615_08750 e5705036067c94d8d8950b9630da3cdb 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 R615_08750 e5705036067c94d8d8950b9630da3cdb 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 179 1.5E-52 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 R615_06315 3325fc7382cf0e8f0d77314d60cba38e 353 Gene3D G3DSA:3.40.50.2000 1 190 1.5E-74 T 12-10-2018 R615_06315 3325fc7382cf0e8f0d77314d60cba38e 353 Gene3D G3DSA:3.40.50.2000 191 336 1.1E-47 T 12-10-2018 R615_06315 3325fc7382cf0e8f0d77314d60cba38e 353 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 21 350 7.8E-115 T 12-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 R615_06315 3325fc7382cf0e8f0d77314d60cba38e 353 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 352 4.5E-100 T 12-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 R615_06315 3325fc7382cf0e8f0d77314d60cba38e 353 SUPERFAMILY SSF53756 1 352 2.23E-110 T 12-10-2018 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 SUPERFAMILY SSF89360 4 101 4.9E-19 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 Gene3D G3DSA:2.60.300.12 3 102 1.8E-11 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 Gene3D G3DSA:3.30.300.130 109 195 1.4E-22 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 Pfam PF01106 NifU-like domain 115 181 3.1E-21 T 12-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 5 195 6.7E-88 T 12-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 4 195 39.214 T 12-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 Pfam PF01521 Iron-sulphur cluster biosynthesis 4 101 1.2E-6 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 122 184 7.0E-21 T 12-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 R615_08470 d21bd48334e03e84c03fb867a3a19cd5 196 SUPERFAMILY SSF117916 99 188 9.16E-25 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily R615_16640 23a466c75ced94a8837ceaa617de773d 224 Gene3D G3DSA:3.30.70.260 129 200 2.1E-78 T 12-10-2018 R615_16640 23a466c75ced94a8837ceaa617de773d 224 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 219 5.2E-66 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 R615_16640 23a466c75ced94a8837ceaa617de773d 224 SUPERFAMILY SSF75445 131 202 5.23E-24 T 12-10-2018 R615_16640 23a466c75ced94a8837ceaa617de773d 224 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 221 33.317 T 12-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 R615_16640 23a466c75ced94a8837ceaa617de773d 224 SUPERFAMILY SSF100950 1 150 4.61E-45 T 12-10-2018 IPR037171 NagB/RpiA transferase-like R615_16640 23a466c75ced94a8837ceaa617de773d 224 Gene3D G3DSA:3.40.50.1360 7 217 2.1E-78 T 12-10-2018 R615_16640 23a466c75ced94a8837ceaa617de773d 224 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 53 217 2.9E-60 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 R615_00730 c90d33baf477ced2162378829ea5a1c1 426 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 224 425 4.4E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_00730 c90d33baf477ced2162378829ea5a1c1 426 Gene3D G3DSA:1.10.3720.10 201 426 1.5E-31 T 12-10-2018 IPR035906 MetI-like superfamily R615_00730 c90d33baf477ced2162378829ea5a1c1 426 Pfam PF11812 Domain of unknown function (DUF3333) 13 155 5.0E-43 T 12-10-2018 IPR024573 Domain of unknown function DUF3333 R615_00730 c90d33baf477ced2162378829ea5a1c1 426 SUPERFAMILY SSF161098 202 410 4.06E-35 T 12-10-2018 IPR035906 MetI-like superfamily R615_00730 c90d33baf477ced2162378829ea5a1c1 426 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 183 423 6.5E-65 T 12-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.777 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 Gene3D G3DSA:3.30.420.80 1 129 1.9E-56 T 12-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 PIRSF PIRSF002131 1 129 1.9E-53 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 SUPERFAMILY SSF53137 15 129 1.7E-47 T 12-10-2018 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 Pfam PF00411 Ribosomal protein S11 19 128 2.2E-51 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 5.3E-56 T 12-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16070 b8ee101f3fab47bc3a8b569249d40ef9 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 12-10-2018 IPR018102 Ribosomal S11, conserved site R615_03240 381570018a4aa397cffbd2c845787e76 608 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 10 604 33.236 T 12-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 R615_03240 381570018a4aa397cffbd2c845787e76 608 Pfam PF00085 Thioredoxin 498 600 1.5E-11 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 R615_03240 381570018a4aa397cffbd2c845787e76 608 SUPERFAMILY SSF52833 492 600 1.02E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_03240 381570018a4aa397cffbd2c845787e76 608 SUPERFAMILY SSF74863 43 154 7.06E-28 T 12-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily R615_03240 381570018a4aa397cffbd2c845787e76 608 Gene3D G3DSA:2.60.40.1250 35 171 2.0E-33 T 12-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily R615_03240 381570018a4aa397cffbd2c845787e76 608 Gene3D G3DSA:3.40.30.10 481 603 9.6E-26 T 12-10-2018 R615_03240 381570018a4aa397cffbd2c845787e76 608 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 198 404 8.3E-16 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 R615_03240 381570018a4aa397cffbd2c845787e76 608 Pfam PF11412 Disulphide bond corrector protein DsbC 45 155 2.7E-23 T 12-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 SUPERFAMILY SSF89000 392 440 6.28E-12 T 12-10-2018 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 Gene3D G3DSA:3.20.20.70 15 379 4.4E-147 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 Gene3D G3DSA:3.30.160.270 380 557 4.8E-44 T 12-10-2018 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 246 259 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 SUPERFAMILY SSF110921 459 556 1.31E-21 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 11 559 49.806 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 Pfam PF00682 HMGL-like 37 315 2.5E-73 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 12 556 2.4E-210 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 Pfam PF08502 LeuA allosteric (dimerisation) domain 425 556 3.9E-21 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 43 59 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 SMART SM00917 425 558 1.8E-17 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 R615_04365 0bfa5a7e842c094fa0867f98076681ea 565 SUPERFAMILY SSF51569 25 333 1.59E-96 T 12-10-2018 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 PIRSF PIRSF015589 2 699 8.4E-276 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 SUPERFAMILY SSF56024 514 693 7.85E-69 T 12-10-2018 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 SUPERFAMILY SSF56024 328 509 7.06E-56 T 12-10-2018 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 SUPERFAMILY SSF143724 122 327 1.96E-66 T 12-10-2018 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 18 692 6.4E-280 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Gene3D G3DSA:3.30.870.10 331 513 3.7E-70 T 12-10-2018 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 SUPERFAMILY SSF140356 16 120 1.02E-35 T 12-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Pfam PF13089 Polyphosphate kinase N-terminal domain 19 124 3.3E-34 T 12-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Hamap MF_00347 Polyphosphate kinase [ppk]. 16 696 27.742 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Pfam PF02503 Polyphosphate kinase middle domain 133 335 2.2E-63 T 12-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Gene3D G3DSA:3.30.870.10 514 698 1.6E-64 T 12-10-2018 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Gene3D G3DSA:3.30.1840.10 11 326 3.8E-103 T 12-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 R615_16655 91f3b730b1a7ae4a9d75523eeafee47b 699 Pfam PF13090 Polyphosphate kinase C-terminal domain 344 691 1.7E-149 T 12-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 R615_14720 a0cf77adf77da526798e7ca32259309e 415 SUPERFAMILY SSF53218 185 328 1.57E-41 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily R615_14720 a0cf77adf77da526798e7ca32259309e 415 Pfam PF00994 Probable molybdopterin binding domain 189 324 5.4E-25 T 12-10-2018 IPR001453 MoaB/Mog domain R615_14720 a0cf77adf77da526798e7ca32259309e 415 SMART SM00852 188 325 2.5E-38 T 12-10-2018 IPR001453 MoaB/Mog domain R615_14720 a0cf77adf77da526798e7ca32259309e 415 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 175 3.5E-44 T 12-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_14720 a0cf77adf77da526798e7ca32259309e 415 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 261 294 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 R615_14720 a0cf77adf77da526798e7ca32259309e 415 Pfam PF03454 MoeA C-terminal region (domain IV) 339 410 5.7E-21 T 12-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_14720 a0cf77adf77da526798e7ca32259309e 415 Gene3D G3DSA:3.90.105.10 33 182 6.7E-138 T 12-10-2018 R615_14720 a0cf77adf77da526798e7ca32259309e 415 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 185 321 6.1E-29 T 12-10-2018 IPR001453 MoaB/Mog domain R615_14720 a0cf77adf77da526798e7ca32259309e 415 SUPERFAMILY SSF63867 334 414 4.32E-25 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_14720 a0cf77adf77da526798e7ca32259309e 415 Gene3D G3DSA:3.40.980.10 32 334 6.7E-138 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily R615_14720 a0cf77adf77da526798e7ca32259309e 415 SUPERFAMILY SSF63882 11 184 1.27E-50 T 12-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_14720 a0cf77adf77da526798e7ca32259309e 415 Gene3D G3DSA:2.40.340.10 335 405 6.7E-138 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_14720 a0cf77adf77da526798e7ca32259309e 415 Gene3D G3DSA:2.170.190.11 57 149 6.7E-138 T 12-10-2018 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 Gene3D G3DSA:3.30.930.10 152 507 4.1E-131 T 12-10-2018 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 Pfam PF01336 OB-fold nucleic acid binding domain 66 135 6.4E-7 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 17 507 42.058 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 Pfam PF00152 tRNA synthetases class II (D, K and N) 156 502 8.9E-82 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 SUPERFAMILY SSF50249 9 149 4.9E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 Gene3D G3DSA:2.40.50.140 3 151 1.1E-22 T 12-10-2018 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 256 273 9.4E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 387 403 9.4E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 238 251 9.4E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 209 225 9.4E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 193 203 9.4E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 12 504 7.6E-194 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_05055 1f8c7371ef0139d5953fd4f2cbf452c1 507 SUPERFAMILY SSF55681 156 503 1.11E-116 T 12-10-2018 R615_01880 d9a718add3096938052916dad316c07e 143 Gene3D G3DSA:3.90.1180.10 1 142 1.2E-65 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 R615_01880 d9a718add3096938052916dad316c07e 143 SUPERFAMILY SSF52161 1 139 8.24E-62 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 R615_01880 d9a718add3096938052916dad316c07e 143 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 143 29.746 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 R615_01880 d9a718add3096938052916dad316c07e 143 Pfam PF00572 Ribosomal protein L13 14 138 1.1E-59 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 R615_01880 d9a718add3096938052916dad316c07e 143 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 140 3.8E-66 T 12-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_01880 d9a718add3096938052916dad316c07e 143 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 12-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 R615_01880 d9a718add3096938052916dad316c07e 143 PIRSF PIRSF002181 1 142 4.7E-53 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 R615_10245 91c2f5cf04a6d0e0f900641fd55400ff 108 SUPERFAMILY SSF50022 1 107 4.47E-39 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_10245 91c2f5cf04a6d0e0f900641fd55400ff 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 106 1.3E-41 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 R615_10245 91c2f5cf04a6d0e0f900641fd55400ff 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 1.5E-35 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 R615_10245 91c2f5cf04a6d0e0f900641fd55400ff 108 Gene3D G3DSA:2.102.10.10 1 108 3.6E-38 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_15285 81cf08de69812b0eb114b081b028b8da 422 SMART SM00471 162 298 5.5E-11 T 12-10-2018 IPR003607 HD/PDEase domain R615_15285 81cf08de69812b0eb114b081b028b8da 422 SUPERFAMILY SSF109604 155 328 6.52E-35 T 12-10-2018 R615_15285 81cf08de69812b0eb114b081b028b8da 422 Gene3D G3DSA:1.10.3210.10 47 329 4.1E-71 T 12-10-2018 R615_15285 81cf08de69812b0eb114b081b028b8da 422 Pfam PF11871 Domain of unknown function (DUF3391) 18 134 1.2E-21 T 12-10-2018 IPR021812 Protein of unknown function DUF3391 R615_15285 81cf08de69812b0eb114b081b028b8da 422 Pfam PF13487 HD domain 218 279 2.4E-12 T 12-10-2018 R615_02175 8ae90e4e4d2c5e2048c62ab12312fd57 420 SUPERFAMILY SSF55205 1 419 1.44E-139 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 R615_02175 8ae90e4e4d2c5e2048c62ab12312fd57 420 Gene3D G3DSA:3.65.10.10 21 231 6.1E-170 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 R615_02175 8ae90e4e4d2c5e2048c62ab12312fd57 420 Gene3D G3DSA:3.65.10.10 6 416 6.1E-170 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 R615_02175 8ae90e4e4d2c5e2048c62ab12312fd57 420 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 44.142 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_02175 8ae90e4e4d2c5e2048c62ab12312fd57 420 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 6.3E-176 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_02175 8ae90e4e4d2c5e2048c62ab12312fd57 420 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 408 2.9E-113 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 R615_12105 6f6b844c9b242262a5c1d4ef50c22e7a 144 Gene3D G3DSA:3.40.30.10 8 136 4.1E-19 T 12-10-2018 R615_12105 6f6b844c9b242262a5c1d4ef50c22e7a 144 SUPERFAMILY SSF52833 12 135 8.05E-19 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_12105 6f6b844c9b242262a5c1d4ef50c22e7a 144 Pfam PF08534 Redoxin 12 129 1.0E-6 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 SUPERFAMILY SSF56672 16 245 2.31E-85 T 12-10-2018 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Gene3D G3DSA:3.30.1490.100 249 359 7.3E-22 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Hamap MF_01113 DNA polymerase IV [dinB]. 17 358 34.296 T 12-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Gene3D G3DSA:1.10.150.20 178 241 6.9E-19 T 12-10-2018 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Gene3D G3DSA:3.30.70.270 20 176 9.1E-64 T 12-10-2018 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Gene3D G3DSA:2.30.40.20 37 89 9.1E-64 T 12-10-2018 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Pfam PF11798 IMS family HHH motif 178 209 2.5E-6 T 12-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 Pfam PF00817 impB/mucB/samB family 23 166 1.6E-50 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 R615_03000 aa5ca19f1086776af5811d63648bea1d 359 SUPERFAMILY SSF100879 253 348 5.69E-16 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 R615_02165 0c947c81345d18060037e37dd33c331b 102 Pfam PF13466 STAS domain 16 94 9.3E-17 T 12-10-2018 IPR002645 STAS domain R615_02165 0c947c81345d18060037e37dd33c331b 102 Gene3D G3DSA:3.30.750.24 11 100 2.0E-14 T 12-10-2018 IPR036513 STAS domain superfamily R615_02165 0c947c81345d18060037e37dd33c331b 102 SUPERFAMILY SSF52091 7 99 4.91E-15 T 12-10-2018 IPR036513 STAS domain superfamily R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 Gene3D G3DSA:1.10.3210.10 199 378 7.4E-32 T 12-10-2018 R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 Gene3D G3DSA:3.20.20.450 7 198 4.9E-17 T 12-10-2018 IPR035919 EAL domain superfamily R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 Pfam PF00563 EAL domain 69 195 4.8E-11 T 12-10-2018 IPR001633 EAL domain R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 SUPERFAMILY SSF109604 186 396 3.45E-43 T 12-10-2018 R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 Pfam PF08668 HDOD domain 203 323 3.2E-22 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 SMART SM00052 1 200 4.1E-5 T 12-10-2018 IPR001633 EAL domain R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 PIRSF PIRSF003180 6 404 1.1E-97 T 12-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing R615_10045 fa43b6b6b9b329c4f0aabf4816c31ba8 406 SUPERFAMILY SSF141868 8 199 9.02E-28 T 12-10-2018 IPR035919 EAL domain superfamily R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Pfam PF14520 Helix-hairpin-helix domain 531 580 1.0E-6 T 12-10-2018 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Gene3D G3DSA:1.10.150.20 529 583 1.5E-19 T 12-10-2018 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Gene3D G3DSA:3.40.1440.10 1 80 1.5E-25 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 SMART SM00278 562 581 2.8 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 SMART SM00278 530 549 1.7 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Gene3D G3DSA:3.30.420.340 356 516 5.5E-45 T 12-10-2018 IPR038476 UvrC homology region 2 superfamily R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 581 24.664 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 SUPERFAMILY SSF82771 2 78 6.67E-19 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 SUPERFAMILY SSF47781 496 583 7.31E-21 T 12-10-2018 IPR010994 RuvA domain 2-like R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 362 516 9.2E-45 T 12-10-2018 IPR001162 UvrC family homology region R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 3 562 6.5E-158 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 SMART SM00465 1 76 8.5E-15 T 12-10-2018 IPR000305 GIY-YIG endonuclease R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Pfam PF02151 UvrB/uvrC motif 183 215 4.0E-7 T 12-10-2018 IPR001943 UVR domain GO:0005515 R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 Pfam PF01541 GIY-YIG catalytic domain 2 71 1.8E-8 T 12-10-2018 IPR000305 GIY-YIG endonuclease R615_08745 2cd9edb5a8a961bd4c1404bcd0289cb0 586 SUPERFAMILY SSF46600 168 220 2.09E-11 T 12-10-2018 IPR036876 UVR domain superfamily R615_04380 b1440bf6c226c9203447c341cb3d6503 119 Pfam PF01253 Translation initiation factor SUI1 43 112 1.4E-17 T 12-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 R615_04380 b1440bf6c226c9203447c341cb3d6503 119 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 10 119 3.3E-34 T 12-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 R615_04380 b1440bf6c226c9203447c341cb3d6503 119 SUPERFAMILY SSF55159 9 115 7.06E-28 T 12-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 R615_04380 b1440bf6c226c9203447c341cb3d6503 119 PIRSF PIRSF037511 1 119 2.4E-35 T 12-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 R615_04380 b1440bf6c226c9203447c341cb3d6503 119 Gene3D G3DSA:3.30.780.10 39 119 1.7E-28 T 12-10-2018 R615_13855 54051055014dbd0883ba3d295a8b8818 106 SUPERFAMILY SSF46767 14 94 3.01E-21 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 R615_13855 54051055014dbd0883ba3d295a8b8818 106 Gene3D G3DSA:1.10.10.10 11 106 3.9E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_13855 54051055014dbd0883ba3d295a8b8818 106 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 13 93 8.6E-21 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 PIRSF PIRSF036492 3 482 2.1E-176 T 12-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 SUPERFAMILY SSF53720 32 453 5.37E-123 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 Pfam PF00171 Aldehyde dehydrogenase family 33 450 2.9E-99 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 Gene3D G3DSA:3.40.309.10 229 432 3.0E-166 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 Gene3D G3DSA:3.40.605.10 35 452 3.0E-166 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 253 264 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 R615_10400 dbffcccf63edea4ffc446865d4b053f0 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 225 232 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 R615_06665 5800ad1c4afcbaee360c5baaa627e003 427 Gene3D G3DSA:1.25.40.10 315 426 6.5E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_06665 5800ad1c4afcbaee360c5baaa627e003 427 SUPERFAMILY SSF48452 320 415 6.25E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 SUPERFAMILY SSF50022 30 195 4.33E-41 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 192 1.5E-66 T 12-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 151 163 6.4E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 120 131 6.4E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 Gene3D G3DSA:2.102.10.10 43 192 6.5E-48 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 3 40 1.7E-13 T 12-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 R615_01890 fdf8c383326014444b00e2dd194e4fa1 198 Pfam PF00355 Rieske [2Fe-2S] domain 54 178 1.9E-10 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 R615_14850 9ff212acc2d80296f56bbb54166e9a02 209 Gene3D G3DSA:1.10.357.10 57 194 1.1E-6 T 12-10-2018 R615_14850 9ff212acc2d80296f56bbb54166e9a02 209 SUPERFAMILY SSF46689 3 74 1.13E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_14850 9ff212acc2d80296f56bbb54166e9a02 209 Gene3D G3DSA:1.10.10.60 1 56 3.8E-9 T 12-10-2018 R615_14850 9ff212acc2d80296f56bbb54166e9a02 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 56 1.9E-4 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 71.52 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 Gene3D G3DSA:1.20.1090.10 171 358 4.4E-59 T 12-10-2018 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 PIRSF PIRSF001455 5 360 7.3E-107 T 12-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 Gene3D G3DSA:3.40.50.1970 1 170 7.2E-66 T 12-10-2018 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 Pfam PF01761 3-dehydroquinate synthase 65 323 1.5E-104 T 12-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 SUPERFAMILY SSF56796 4 355 1.03E-114 T 12-10-2018 R615_15235 4f6dc734b4b84c080e9605d3d5f5a124 363 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 353 7.2E-116 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 Gene3D G3DSA:3.30.428.10 1 109 2.8E-38 T 12-10-2018 IPR036265 HIT-like superfamily R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 Pfam PF01230 HIT domain 13 106 1.9E-26 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 SUPERFAMILY SSF54197 1 107 1.52E-35 T 12-10-2018 IPR036265 HIT-like superfamily R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 ProSitePatterns PS00892 HIT domain signature. 85 103 - T 12-10-2018 IPR019808 Histidine triad, conserved site R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 PRINTS PR00332 Histidine triad family signature 26 44 7.9E-20 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 PRINTS PR00332 Histidine triad family signature 5 21 7.9E-20 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_01055 569aa408d3f3d294a26d7d7821e6933c 110 PRINTS PR00332 Histidine triad family signature 92 102 7.9E-20 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_03750 d2ca4dff619743ec1d1f5ea7d9fcc3b3 505 Gene3D G3DSA:3.20.20.70 128 492 7.0E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_03750 d2ca4dff619743ec1d1f5ea7d9fcc3b3 505 Pfam PF01645 Conserved region in glutamate synthase 136 466 1.7E-85 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 R615_03750 d2ca4dff619743ec1d1f5ea7d9fcc3b3 505 PIRSF PIRSF006429 4 504 8.7E-158 T 12-10-2018 IPR024188 Glutamate synthase large subunit-like protein R615_03750 d2ca4dff619743ec1d1f5ea7d9fcc3b3 505 SUPERFAMILY SSF51395 9 493 1.71E-123 T 12-10-2018 R615_00745 07c3588b28db7804e45c7c5128893e02 310 Pfam PF13609 Gram-negative porin 6 294 1.8E-37 T 12-10-2018 R615_00745 07c3588b28db7804e45c7c5128893e02 310 SUPERFAMILY SSF56935 27 310 2.62E-50 T 12-10-2018 R615_00745 07c3588b28db7804e45c7c5128893e02 310 Gene3D G3DSA:2.40.160.10 26 310 1.6E-52 T 12-10-2018 IPR023614 Porin domain superfamily R615_00745 07c3588b28db7804e45c7c5128893e02 310 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 1.4E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 R615_00745 07c3588b28db7804e45c7c5128893e02 310 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 269 286 1.4E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 R615_00745 07c3588b28db7804e45c7c5128893e02 310 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 51 62 1.4E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 R615_00745 07c3588b28db7804e45c7c5128893e02 310 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 1.4E-6 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 SUPERFAMILY SSF47384 403 496 4.51E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 SUPERFAMILY SSF55874 488 659 5.89E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03545 9cbc12700ea1c9bede53e977a341326c 668 SMART SM00091 283 349 1.9E-4 T 12-10-2018 IPR000014 PAS domain R615_03545 9cbc12700ea1c9bede53e977a341326c 668 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 543 659 1.1E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_03545 9cbc12700ea1c9bede53e977a341326c 668 SMART SM00387 540 661 5.2E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_03545 9cbc12700ea1c9bede53e977a341326c 668 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 616 6.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 658 6.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 637 6.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 PRINTS PR00344 Bacterial sensor protein C-terminal signature 588 602 6.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 Gene3D G3DSA:3.30.565.10 498 664 1.5E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03545 9cbc12700ea1c9bede53e977a341326c 668 Gene3D G3DSA:3.30.450.20 272 402 3.2E-10 T 12-10-2018 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 Pfam PF00512 His Kinase A (phospho-acceptor) domain 410 497 1.1E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 Gene3D G3DSA:1.10.287.130 403 496 1.6E-23 T 12-10-2018 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 SMART SM00388 408 498 1.0E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_03545 9cbc12700ea1c9bede53e977a341326c 668 SUPERFAMILY SSF55785 269 339 7.96E-9 T 12-10-2018 IPR035965 PAS domain superfamily R615_03545 9cbc12700ea1c9bede53e977a341326c 668 Pfam PF08448 PAS fold 289 395 1.2E-6 T 12-10-2018 IPR013656 PAS fold-4 R615_16785 5b2c61c46482c7f5b9edcf3269bda459 258 SUPERFAMILY SSF53335 10 223 1.15E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_16785 5b2c61c46482c7f5b9edcf3269bda459 258 Gene3D G3DSA:3.40.50.150 13 243 6.6E-32 T 12-10-2018 R615_16785 5b2c61c46482c7f5b9edcf3269bda459 258 Pfam PF08241 Methyltransferase domain 80 182 1.2E-4 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 R615_07645 68cf51332fda8f296c72215df56b6391 479 Gene3D G3DSA:3.40.190.10 98 324 3.1E-60 T 12-10-2018 R615_07645 68cf51332fda8f296c72215df56b6391 479 SUPERFAMILY SSF103088 349 458 4.58E-23 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_07645 68cf51332fda8f296c72215df56b6391 479 Pfam PF00691 OmpA family 360 452 2.6E-16 T 12-10-2018 IPR006665 OmpA-like domain R615_07645 68cf51332fda8f296c72215df56b6391 479 Gene3D G3DSA:3.30.1330.60 338 464 3.8E-23 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_07645 68cf51332fda8f296c72215df56b6391 479 Pfam PF12849 PBP superfamily domain 99 314 5.5E-28 T 12-10-2018 IPR024370 PBP domain R615_07645 68cf51332fda8f296c72215df56b6391 479 Gene3D G3DSA:3.40.190.10 159 288 3.1E-60 T 12-10-2018 R615_07645 68cf51332fda8f296c72215df56b6391 479 SUPERFAMILY SSF53850 51 370 8.31E-61 T 12-10-2018 R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 335 349 - T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 Gene3D G3DSA:3.40.50.300 241 514 6.1E-115 T 12-10-2018 R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 SUPERFAMILY SSF160246 30 94 3.4E-17 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 Pfam PF00437 Type II/IV secretion system protein 142 407 3.2E-90 T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 SUPERFAMILY SSF52540 125 511 4.21E-101 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 30 511 5.7E-209 T 12-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 Gene3D G3DSA:3.30.300.160 16 107 3.9E-17 T 12-10-2018 R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 Gene3D G3DSA:3.30.450.90 108 240 4.0E-52 T 12-10-2018 R615_08805 2cb5c75a16d79bed437c9cf30ff13731 514 SMART SM00382 268 391 1.8E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02295 d17007c68d92722871f0f50df5d76245 160 Pfam PF02542 YgbB family 1 154 4.4E-67 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 R615_02295 d17007c68d92722871f0f50df5d76245 160 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 12-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 R615_02295 d17007c68d92722871f0f50df5d76245 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 155 4.8E-69 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 R615_02295 d17007c68d92722871f0f50df5d76245 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 35.657 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 R615_02295 d17007c68d92722871f0f50df5d76245 160 SUPERFAMILY SSF69765 1 156 1.15E-64 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 R615_02295 d17007c68d92722871f0f50df5d76245 160 Gene3D G3DSA:3.30.1330.50 1 159 4.4E-69 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 R615_12985 9bf9397d48748677c90a94e12ccf8d8c 477 SUPERFAMILY SSF56059 19 465 1.83E-65 T 12-10-2018 R615_12985 9bf9397d48748677c90a94e12ccf8d8c 477 PIRSF PIRSF005522 1 476 6.4E-233 T 12-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 R615_12985 9bf9397d48748677c90a94e12ccf8d8c 477 Pfam PF14403 Circularly permuted ATP-grasp type 2 77 450 6.1E-161 T 12-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 R615_12985 9bf9397d48748677c90a94e12ccf8d8c 477 Gene3D G3DSA:3.30.1490.270 347 407 4.2E-27 T 12-10-2018 R615_12985 9bf9397d48748677c90a94e12ccf8d8c 477 Gene3D G3DSA:3.40.50.11290 212 310 1.4E-41 T 12-10-2018 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Gene3D G3DSA:3.30.300.10 6 233 1.3E-168 T 12-10-2018 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 PIRSF PIRSF000497 1 402 4.3E-167 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 SUPERFAMILY SSF55973 6 110 2.47E-44 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 401 55.843 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Gene3D G3DSA:3.30.300.10 12 270 1.3E-168 T 12-10-2018 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 SUPERFAMILY SSF55973 233 401 3.49E-64 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 366 9.1E-66 T 12-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 367 1.7E-179 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 101 4.6E-40 T 12-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Gene3D G3DSA:3.30.300.10 103 392 1.3E-168 T 12-10-2018 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 231 1.5E-41 T 12-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_01335 64ec2ffa14f1b4a1a20d41086ba810a7 403 SUPERFAMILY SSF55973 112 232 9.03E-49 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 R615_00925 cd34678485024f053813ec639e097496 301 PRINTS PR00474 Glutamate 5-kinase family signature 59 73 6.9E-9 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_00925 cd34678485024f053813ec639e097496 301 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 6.9E-9 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_00925 cd34678485024f053813ec639e097496 301 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 6.9E-9 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_00925 cd34678485024f053813ec639e097496 301 PIRSF PIRSF000728 13 297 7.9E-108 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_00925 cd34678485024f053813ec639e097496 301 Hamap MF_00082 Acetylglutamate kinase [argB]. 27 290 51.564 T 12-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_00925 cd34678485024f053813ec639e097496 301 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 272 3.5E-78 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_00925 cd34678485024f053813ec639e097496 301 Gene3D G3DSA:3.40.1160.10 3 300 1.5E-98 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_00925 cd34678485024f053813ec639e097496 301 Pfam PF00696 Amino acid kinase family 28 274 3.7E-42 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 R615_00925 cd34678485024f053813ec639e097496 301 SUPERFAMILY SSF53633 7 297 7.85E-96 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_11250 2b7fbaa9187b2cad8a402a378b55481f 653 Gene3D G3DSA:2.160.20.110 313 496 3.3E-31 T 12-10-2018 R615_11250 2b7fbaa9187b2cad8a402a378b55481f 653 Pfam PF07581 The GLUG motif 453 478 6.0E-4 T 12-10-2018 IPR011493 GLUG R615_11250 2b7fbaa9187b2cad8a402a378b55481f 653 SUPERFAMILY SSF103647 173 230 3.79E-7 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_11250 2b7fbaa9187b2cad8a402a378b55481f 653 SUPERFAMILY SSF103647 59 174 5.1E-12 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_11250 2b7fbaa9187b2cad8a402a378b55481f 653 Gene3D G3DSA:4.10.1080.10 22 135 1.2E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_11250 2b7fbaa9187b2cad8a402a378b55481f 653 Gene3D G3DSA:4.10.1080.10 139 231 6.0E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 Gene3D G3DSA:3.40.50.620 1 187 1.6E-57 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_03285 e39622dbb899e02d90827356a91ee7f8 317 PIRSF PIRSF004491 1 315 6.1E-98 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 75 4.1E-7 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 Pfam PF06574 FAD synthetase 14 167 1.9E-52 T 12-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 308 2.5E-87 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 SUPERFAMILY SSF52374 17 175 8.73E-34 T 12-10-2018 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 SUPERFAMILY SSF82114 175 310 3.71E-39 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 SMART SM00904 183 309 1.5E-51 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 Pfam PF01687 Riboflavin kinase 184 308 8.2E-34 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 R615_03285 e39622dbb899e02d90827356a91ee7f8 317 Gene3D G3DSA:2.40.30.30 188 316 3.9E-37 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 SMART SM00729 381 631 1.8E-9 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 24 651 49.438 T 12-10-2018 IPR022946 Uncharacterised protein family UPF0313 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 Gene3D G3DSA:3.80.30.20 380 648 8.5E-16 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 SUPERFAMILY SSF102114 378 639 8.24E-14 T 12-10-2018 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 385 405 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 Pfam PF04055 Radical SAM superfamily 385 590 4.7E-19 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 24 649 2.3E-261 T 12-10-2018 IPR022946 Uncharacterised protein family UPF0313 R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 Pfam PF08497 Radical SAM N-terminal 24 384 1.1E-141 T 12-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal R615_10190 eee4a7bd9d980cf5892ff774f8aabfce 706 Pfam PF11842 Domain of unknown function (DUF3362) 599 690 1.2E-39 T 12-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 Gene3D G3DSA:3.40.1550.10 42 228 1.8E-55 T 12-10-2018 IPR028976 CheC-like superfamily R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 SUPERFAMILY SSF101801 246 321 5.23E-15 T 12-10-2018 IPR036429 SpoA-like superfamily R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 PIRSF PIRSF002888 1 322 2.9E-92 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 316 1.8E-104 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 249 316 6.5E-17 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 SUPERFAMILY SSF103039 4 228 1.66E-20 T 12-10-2018 IPR028976 CheC-like superfamily R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 1.5E-20 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 112 131 1.5E-20 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 87 103 1.5E-20 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 209 227 1.5E-20 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_05190 3cdd8b55da658e9d3687e468bf2ea0ec 322 Pfam PF02154 Flagellar motor switch protein FliM 36 227 1.3E-72 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 451 474 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 476 499 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.4E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Pfam PF00873 AcrB/AcrD/AcrF family 6 1027 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:3.30.2090.10 188 278 6.3E-280 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82714 193 275 7.59E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82693 154 333 1.07E-18 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82866 299 503 2.62E-34 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1030 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:1.20.1640.10 13 509 6.3E-280 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82866 807 1028 1.44E-52 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:3.30.2090.10 720 808 6.3E-280 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:1.20.1640.10 510 1023 6.3E-280 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:3.30.70.1430 42 816 6.3E-280 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82693 42 127 2.28E-20 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:3.30.70.1430 564 665 6.3E-280 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:3.30.70.1440 666 866 6.3E-280 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82714 723 805 1.31E-14 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_15905 38f98e47693c038481c5b151776b77b8 1031 SUPERFAMILY SSF82693 563 664 1.33E-8 T 12-10-2018 R615_15905 38f98e47693c038481c5b151776b77b8 1031 Gene3D G3DSA:3.30.70.1320 136 335 6.3E-280 T 12-10-2018 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 Pfam PF00571 CBS domain 148 203 0.0044 T 12-10-2018 IPR000644 CBS domain R615_11150 437300bf2d82b023eca28e6bd73635d9 494 Pfam PF00571 CBS domain 95 139 3.7E-11 T 12-10-2018 IPR000644 CBS domain R615_11150 437300bf2d82b023eca28e6bd73635d9 494 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 493 82.598 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 480 1.5E-158 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 461 1.4E-183 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 Gene3D G3DSA:3.20.20.70 1 493 1.4E-207 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 SMART SM00116 96 142 3.5E-10 T 12-10-2018 IPR000644 CBS domain R615_11150 437300bf2d82b023eca28e6bd73635d9 494 SMART SM00116 157 205 1.3E-4 T 12-10-2018 IPR000644 CBS domain R615_11150 437300bf2d82b023eca28e6bd73635d9 494 SUPERFAMILY SSF51412 2 484 3.66E-122 T 12-10-2018 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 SUPERFAMILY SSF54631 95 203 2.32E-26 T 12-10-2018 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 PIRSF PIRSF000130 1 494 2.1E-198 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 299 311 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 R615_11150 437300bf2d82b023eca28e6bd73635d9 494 SMART SM01240 7 480 0.0 T 12-10-2018 R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 Pfam PF05195 Aminopeptidase P, N-terminal domain 9 128 1.0E-35 T 12-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 Pfam PF00557 Metallopeptidase family M24 184 415 1.1E-65 T 12-10-2018 IPR000994 Peptidase M24 R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 Gene3D G3DSA:3.40.350.10 4 173 2.8E-55 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 SUPERFAMILY SSF53092 4 176 4.19E-54 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 SMART SM01011 4 138 2.3E-63 T 12-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 Gene3D G3DSA:3.90.230.10 174 438 2.4E-98 T 12-10-2018 R615_16895 d93e6746f082cc20c56d9ebc608cf850 438 SUPERFAMILY SSF55920 177 434 7.72E-83 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like R615_02210 cbe5fd873b17e8b0466c2be90258cb04 310 PIRSF PIRSF016660 1 310 2.0E-115 T 12-10-2018 IPR008526 Inner membrane protein YedI R615_02210 cbe5fd873b17e8b0466c2be90258cb04 310 Pfam PF05661 Protein of unknown function (DUF808) 5 299 3.6E-111 T 12-10-2018 IPR008526 Inner membrane protein YedI R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 Pfam PF01472 PUA domain 288 353 2.7E-18 T 12-10-2018 IPR002478 PUA domain GO:0003723 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 PRINTS PR00474 Glutamate 5-kinase family signature 220 240 1.8E-52 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 PRINTS PR00474 Glutamate 5-kinase family signature 54 68 1.8E-52 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 PRINTS PR00474 Glutamate 5-kinase family signature 160 187 1.8E-52 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 PRINTS PR00474 Glutamate 5-kinase family signature 88 116 1.8E-52 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 PRINTS PR00474 Glutamate 5-kinase family signature 128 149 1.8E-52 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 TIGRFAM TIGR01027 proB: glutamate 5-kinase 18 377 2.8E-129 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 Pfam PF00696 Amino acid kinase family 17 245 6.0E-45 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 Gene3D G3DSA:2.30.130.10 277 379 4.6E-29 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 ProSitePatterns PS00902 Glutamate 5-kinase signature. 218 235 - T 12-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 SUPERFAMILY SSF88697 287 378 4.48E-23 T 12-10-2018 IPR015947 PUA-like superfamily R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 SUPERFAMILY SSF53633 17 266 1.7E-68 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 Hamap MF_00456 Glutamate 5-kinase [proB]. 17 270 35.934 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 Gene3D G3DSA:3.40.1160.10 6 276 9.3E-91 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 PIRSF PIRSF000729 13 379 3.0E-125 T 12-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 R615_03265 cc09eb8a1aa9a2f7060ace7abbcd79e0 379 SMART SM00359 288 367 1.7E-17 T 12-10-2018 IPR002478 PUA domain GO:0003723 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 SMART SM00382 139 409 0.0014 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 127 346 1.5E-62 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 337 346 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 5 70 2.8E-20 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 SUPERFAMILY SSF47917 349 463 3.4E-53 T 12-10-2018 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 Gene3D G3DSA:3.40.50.300 73 348 5.4E-113 T 12-10-2018 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 SUPERFAMILY SSF50615 2 72 1.12E-24 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 55.224 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 SUPERFAMILY SSF52540 74 352 5.69E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 Gene3D G3DSA:2.40.10.170 1 72 7.7E-29 T 12-10-2018 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 2 464 1.9E-249 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 R615_17305 1930fc9ceebc6c48d5241affd8fe746a 464 Gene3D G3DSA:1.10.1140.10 349 464 5.2E-57 T 12-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_08670 389ac779122f09d187c6b590cb5967ee 439 SUPERFAMILY SSF52540 12 226 8.09E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08670 389ac779122f09d187c6b590cb5967ee 439 Gene3D G3DSA:3.40.50.300 6 163 6.2E-48 T 12-10-2018 R615_08670 389ac779122f09d187c6b590cb5967ee 439 Pfam PF12002 MgsA AAA+ ATPase C terminal 255 421 2.9E-68 T 12-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal R615_08670 389ac779122f09d187c6b590cb5967ee 439 Gene3D G3DSA:1.10.3710.10 333 434 7.9E-36 T 12-10-2018 R615_08670 389ac779122f09d187c6b590cb5967ee 439 Gene3D G3DSA:1.10.8.60 166 228 6.1E-6 T 12-10-2018 R615_08670 389ac779122f09d187c6b590cb5967ee 439 Gene3D G3DSA:1.20.272.10 230 332 4.1E-43 T 12-10-2018 R615_08670 389ac779122f09d187c6b590cb5967ee 439 Pfam PF16193 AAA C-terminal domain 182 254 4.4E-20 T 12-10-2018 IPR032423 AAA C-terminal domain R615_08670 389ac779122f09d187c6b590cb5967ee 439 SUPERFAMILY SSF48019 239 421 1.25E-74 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 R615_08670 389ac779122f09d187c6b590cb5967ee 439 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 160 7.6E-16 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_08670 389ac779122f09d187c6b590cb5967ee 439 SMART SM00382 48 164 4.4E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_07815 26163993176a36364a066c78d698d2c8 298 SUPERFAMILY SSF55073 140 291 8.63E-46 T 12-10-2018 IPR029787 Nucleotide cyclase R615_07815 26163993176a36364a066c78d698d2c8 298 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 132 291 2.8E-50 T 12-10-2018 IPR000160 GGDEF domain R615_07815 26163993176a36364a066c78d698d2c8 298 SUPERFAMILY SSF52172 4 138 6.97E-40 T 12-10-2018 IPR011006 CheY-like superfamily R615_07815 26163993176a36364a066c78d698d2c8 298 Gene3D G3DSA:3.40.50.2300 1 131 8.1E-40 T 12-10-2018 R615_07815 26163993176a36364a066c78d698d2c8 298 Gene3D G3DSA:3.30.70.270 132 294 2.8E-54 T 12-10-2018 R615_07815 26163993176a36364a066c78d698d2c8 298 Pfam PF00072 Response regulator receiver domain 8 117 6.5E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07815 26163993176a36364a066c78d698d2c8 298 SMART SM00448 6 118 8.4E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07815 26163993176a36364a066c78d698d2c8 298 SMART SM00267 124 292 1.3E-53 T 12-10-2018 IPR000160 GGDEF domain R615_07815 26163993176a36364a066c78d698d2c8 298 Pfam PF00990 Diguanylate cyclase, GGDEF domain 135 287 8.4E-43 T 12-10-2018 IPR000160 GGDEF domain R615_02135 78a5b73c4c8d5e5d06384bf5f9ad0b00 189 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 11 185 2.2E-35 T 12-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related R615_02135 78a5b73c4c8d5e5d06384bf5f9ad0b00 189 Gene3D G3DSA:2.60.450.10 60 189 4.2E-19 T 12-10-2018 R615_02135 78a5b73c4c8d5e5d06384bf5f9ad0b00 189 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 185 5.8E-36 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 R615_02135 78a5b73c4c8d5e5d06384bf5f9ad0b00 189 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 1 188 19.575 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 R615_08790 2b58ffa67d1826fa209d5dd557fabe20 272 PIRSF PIRSF000090 24 272 5.2E-83 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 R615_08790 2b58ffa67d1826fa209d5dd557fabe20 272 Gene3D G3DSA:3.40.50.620 24 270 4.8E-86 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08790 2b58ffa67d1826fa209d5dd557fabe20 272 Pfam PF01012 Electron transfer flavoprotein domain 53 229 1.1E-46 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 R615_08790 2b58ffa67d1826fa209d5dd557fabe20 272 SMART SM00893 46 234 2.2E-69 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 R615_08790 2b58ffa67d1826fa209d5dd557fabe20 272 SUPERFAMILY SSF52402 24 265 4.95E-85 T 12-10-2018 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 Gene3D G3DSA:3.40.50.150 81 436 7.8E-92 T 12-10-2018 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 18 434 4.4E-86 T 12-10-2018 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 SUPERFAMILY SSF50249 9 66 4.28E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12735 dd35cd28baca7c19bb334350f77583a3 447 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 424 434 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site R615_12735 dd35cd28baca7c19bb334350f77583a3 447 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 368 440 1.9E-13 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 275 337 5.8E-8 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 Gene3D G3DSA:3.40.1350.30 127 277 7.8E-92 T 12-10-2018 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 Gene3D G3DSA:2.40.50.140 2 80 4.1E-23 T 12-10-2018 R615_12735 dd35cd28baca7c19bb334350f77583a3 447 SUPERFAMILY SSF53335 69 440 4.0E-66 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_12735 dd35cd28baca7c19bb334350f77583a3 447 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 373 403 - T 12-10-2018 IPR030390 RNA methyltransferase TrmA, active site R615_08290 98504944bef71ff02c4879bf3752cc9f 335 SUPERFAMILY SSF143422 16 191 1.02E-20 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_08290 98504944bef71ff02c4879bf3752cc9f 335 SMART SM01321 12 186 5.4E-5 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_02290 58e971b97c8860e6b18f304dadbc2b20 233 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 3 229 38.948 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 R615_02290 58e971b97c8860e6b18f304dadbc2b20 233 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 102 109 - T 12-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 R615_02290 58e971b97c8860e6b18f304dadbc2b20 233 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 7 229 9.7E-64 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 R615_02290 58e971b97c8860e6b18f304dadbc2b20 233 SUPERFAMILY SSF53448 5 229 5.41E-55 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_02290 58e971b97c8860e6b18f304dadbc2b20 233 Gene3D G3DSA:3.90.550.10 2 232 3.1E-66 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_02290 58e971b97c8860e6b18f304dadbc2b20 233 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 7 231 4.1E-64 T 12-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 R615_02875 7566c10ab26d380f28d11ca5adda7d37 949 Gene3D G3DSA:2.60.120.260 21 177 2.7E-6 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_02875 7566c10ab26d380f28d11ca5adda7d37 949 Gene3D G3DSA:2.60.120.260 197 341 4.8E-7 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_15100 b95288633bfdc36114856bd061382ef3 69 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 1.5E-32 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15100 b95288633bfdc36114856bd061382ef3 69 SUPERFAMILY SSF143800 1 67 1.1E-27 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15100 b95288633bfdc36114856bd061382ef3 69 Gene3D G3DSA:2.30.170.50 1 69 5.5E-31 T 12-10-2018 R615_15100 b95288633bfdc36114856bd061382ef3 69 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15100 b95288633bfdc36114856bd061382ef3 69 Pfam PF01197 Ribosomal protein L31 1 65 7.2E-31 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15100 b95288633bfdc36114856bd061382ef3 69 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 31.077 T 12-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15100 b95288633bfdc36114856bd061382ef3 69 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.5E-21 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15100 b95288633bfdc36114856bd061382ef3 69 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.5E-21 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15100 b95288633bfdc36114856bd061382ef3 69 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.5E-21 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_09610 da46c8934f6d290057d2744c3bb12c85 180 Gene3D G3DSA:3.40.1360.10 75 165 5.6E-12 T 12-10-2018 R615_09610 da46c8934f6d290057d2744c3bb12c85 180 Gene3D G3DSA:1.10.8.420 1 50 1.2E-8 T 12-10-2018 R615_09610 da46c8934f6d290057d2744c3bb12c85 180 SUPERFAMILY SSF111304 3 161 1.27E-31 T 12-10-2018 IPR023627 Recombination protein RecR R615_09610 da46c8934f6d290057d2744c3bb12c85 180 Pfam PF02132 RecR protein 38 75 3.1E-9 T 12-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger R615_09610 da46c8934f6d290057d2744c3bb12c85 180 Pfam PF13662 Toprim domain 94 157 4.2E-6 T 12-10-2018 IPR006171 TOPRIM domain R615_01405 441a4c662664a64a39ec9703f875d2ff 366 SUPERFAMILY SSF53850 25 365 1.33E-95 T 12-10-2018 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 178 197 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 124 140 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 310 336 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 155 169 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 215 234 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 265 284 1.1E-54 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 PIRSF PIRSF019574 2 366 5.8E-127 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 Gene3D G3DSA:3.40.190.10 133 360 2.3E-126 T 12-10-2018 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 Gene3D G3DSA:3.40.190.10 28 334 2.3E-126 T 12-10-2018 R615_01405 441a4c662664a64a39ec9703f875d2ff 366 Pfam PF13416 Bacterial extracellular solute-binding protein 42 331 1.1E-31 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Gene3D G3DSA:3.30.930.10 11 471 3.7E-235 T 12-10-2018 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 PIRSF PIRSF001535 1 579 3.0E-258 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 SUPERFAMILY SSF52954 469 577 3.78E-28 T 12-10-2018 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Pfam PF03129 Anticodon binding domain 481 575 6.7E-13 T 12-10-2018 IPR004154 Anticodon-binding R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 465 7.7E-50 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Gene3D G3DSA:3.90.960.10 240 395 3.7E-235 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 578 41.359 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Pfam PF04073 Aminoacyl-tRNA editing domain 257 382 1.1E-22 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 SUPERFAMILY SSF55826 218 396 1.7E-25 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 Gene3D G3DSA:3.40.50.800 4 560 3.7E-235 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 SUPERFAMILY SSF55681 10 484 5.33E-106 T 12-10-2018 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.5E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.5E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.5E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.5E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 R615_10335 d6e5f333089baa87b14d9c5df5fc49a0 579 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 573 7.4E-231 T 12-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 R615_15210 ad44967cf71cd10bc053acfab3343300 366 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 34 43 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 R615_15210 ad44967cf71cd10bc053acfab3343300 366 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 17 359 3.5E-143 T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 R615_15210 ad44967cf71cd10bc053acfab3343300 366 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 154 170 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 R615_15210 ad44967cf71cd10bc053acfab3343300 366 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 21 357 7.3E-138 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 R615_15210 ad44967cf71cd10bc053acfab3343300 366 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 18 361 50.576 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 R615_15210 ad44967cf71cd10bc053acfab3343300 366 SUPERFAMILY SSF51726 13 364 1.31E-126 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 R615_15210 ad44967cf71cd10bc053acfab3343300 366 Gene3D G3DSA:3.20.20.210 7 366 3.2E-163 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 R615_11485 89d10cf23162c2de5850ebd5ae91244f 337 Gene3D G3DSA:3.40.50.410 88 289 8.7E-60 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_11485 89d10cf23162c2de5850ebd5ae91244f 337 SUPERFAMILY SSF53300 85 284 6.38E-40 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_11485 89d10cf23162c2de5850ebd5ae91244f 337 SMART SM00327 88 289 5.2E-24 T 12-10-2018 IPR002035 von Willebrand factor, type A R615_11485 89d10cf23162c2de5850ebd5ae91244f 337 Pfam PF00092 von Willebrand factor type A domain 90 282 2.7E-27 T 12-10-2018 IPR002035 von Willebrand factor, type A R615_11485 89d10cf23162c2de5850ebd5ae91244f 337 Pfam PF07584 Aerotolerance regulator N-terminal 6 75 3.6E-6 T 12-10-2018 IPR024163 Aerotolerance regulator, N-terminal R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SUPERFAMILY SSF55785 629 751 7.99E-9 T 12-10-2018 IPR035965 PAS domain superfamily R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SMART SM00387 900 1010 5.6E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SMART SM00388 791 856 2.0E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Gene3D G3DSA:1.10.287.130 757 854 4.3E-11 T 12-10-2018 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SMART SM00448 1032 1143 6.0E-4 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Gene3D G3DSA:3.30.450.20 626 756 2.3E-13 T 12-10-2018 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 PRINTS PR00344 Bacterial sensor protein C-terminal signature 994 1007 2.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 PRINTS PR00344 Bacterial sensor protein C-terminal signature 936 950 2.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 PRINTS PR00344 Bacterial sensor protein C-terminal signature 970 988 2.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Gene3D G3DSA:1.20.1730.10 38 527 1.9E-13 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SUPERFAMILY SSF47384 776 856 1.63E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Pfam PF12860 PAS fold 644 758 3.6E-40 T 12-10-2018 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 901 1009 1.3E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SUPERFAMILY SSF52172 1034 1148 3.22E-14 T 12-10-2018 IPR011006 CheY-like superfamily R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Pfam PF00512 His Kinase A (phospho-acceptor) domain 791 856 3.1E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Gene3D G3DSA:3.30.565.10 855 1014 4.5E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 SUPERFAMILY SSF55874 847 1012 1.7E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_11980 d829ecabaa6e4059cc29888b638609b0 1148 Gene3D G3DSA:3.40.50.2300 1035 1148 7.6E-13 T 12-10-2018 R615_09945 dd43b009929fe4c8e558e807f7c572d1 295 Pfam PF13276 HTH-like domain 53 108 9.0E-19 T 12-10-2018 IPR025948 HTH-like domain R615_09945 dd43b009929fe4c8e558e807f7c572d1 295 Pfam PF00665 Integrase core domain 135 248 3.8E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 R615_09945 dd43b009929fe4c8e558e807f7c572d1 295 SUPERFAMILY SSF53098 132 291 6.37E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_09945 dd43b009929fe4c8e558e807f7c572d1 295 Gene3D G3DSA:3.30.420.10 132 281 6.2E-18 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_15570 332148e9a455efbd35937f88ff4dce4e 335 Gene3D G3DSA:3.90.180.10 11 331 7.6E-120 T 12-10-2018 R615_15570 332148e9a455efbd35937f88ff4dce4e 335 SUPERFAMILY SSF50129 3 159 5.17E-47 T 12-10-2018 IPR011032 GroES-like superfamily R615_15570 332148e9a455efbd35937f88ff4dce4e 335 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 R615_15570 332148e9a455efbd35937f88ff4dce4e 335 SUPERFAMILY SSF51735 138 301 2.91E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_15570 332148e9a455efbd35937f88ff4dce4e 335 SMART SM00829 12 331 4.4E-7 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 R615_15570 332148e9a455efbd35937f88ff4dce4e 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 133 7.9E-29 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 R615_15570 332148e9a455efbd35937f88ff4dce4e 335 Pfam PF00107 Zinc-binding dehydrogenase 175 297 5.2E-21 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 R615_15570 332148e9a455efbd35937f88ff4dce4e 335 Gene3D G3DSA:3.40.50.720 149 303 7.6E-120 T 12-10-2018 R615_16880 4a7f8452dcda1c69fe0f84733ec72137 292 SUPERFAMILY SSF109604 13 279 7.53E-60 T 12-10-2018 R615_16880 4a7f8452dcda1c69fe0f84733ec72137 292 Gene3D G3DSA:1.10.3210.10 11 281 1.9E-58 T 12-10-2018 R615_16880 4a7f8452dcda1c69fe0f84733ec72137 292 Pfam PF08668 HDOD domain 19 211 1.1E-48 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 SUPERFAMILY SSF81301 1 119 1.42E-30 T 12-10-2018 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.232 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 SUPERFAMILY SSF81891 120 360 7.06E-52 T 12-10-2018 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Pfam PF01966 HD domain 231 306 2.7E-6 T 12-10-2018 IPR006674 HD domain R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Gene3D G3DSA:1.10.3090.10 122 408 1.5E-43 T 12-10-2018 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 211 4.7E-12 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 SMART SM00471 224 359 0.0063 T 12-10-2018 IPR003607 HD/PDEase domain R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Pfam PF01743 Poly A polymerase head domain 3 122 9.7E-19 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 43.734 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 PIRSF PIRSF000813 1 408 3.2E-196 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 R615_14480 3c8b6d1ae9bc9248f5425022b0169847 410 Gene3D G3DSA:3.30.460.10 1 121 3.4E-30 T 12-10-2018 R615_00870 aefd1f2460e6d10ca7f67fd3f65828a2 127 SUPERFAMILY SSF55298 1 125 1.73E-43 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 R615_00870 aefd1f2460e6d10ca7f67fd3f65828a2 127 Pfam PF01042 Endoribonuclease L-PSP 8 124 2.8E-40 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 R615_00870 aefd1f2460e6d10ca7f67fd3f65828a2 127 Gene3D G3DSA:3.30.1330.40 1 125 6.3E-50 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 R615_00870 aefd1f2460e6d10ca7f67fd3f65828a2 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 1.2E-50 T 12-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 R615_00870 aefd1f2460e6d10ca7f67fd3f65828a2 127 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 12-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 Pfam PF03466 LysR substrate binding domain 89 294 1.1E-35 T 12-10-2018 IPR005119 LysR, substrate-binding R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 Gene3D G3DSA:3.40.190.290 91 294 1.8E-53 T 12-10-2018 R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 Gene3D G3DSA:1.10.10.10 2 89 1.2E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 SUPERFAMILY SSF46785 2 85 9.31E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 SUPERFAMILY SSF53850 90 297 2.53E-37 T 12-10-2018 R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_12895 1a04cf827ca55c22839a25d7acb6a9f7 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.5E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_06335 da983638f038edb6c64d514379cc181e 293 Pfam PF00483 Nucleotidyl transferase 2 241 2.0E-72 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 R615_06335 da983638f038edb6c64d514379cc181e 293 Gene3D G3DSA:3.90.550.10 1 293 6.2E-84 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_06335 da983638f038edb6c64d514379cc181e 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 289 3.3E-152 T 12-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 R615_06335 da983638f038edb6c64d514379cc181e 293 SUPERFAMILY SSF53448 1 288 1.82E-90 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_03405 aeafa584a45935196a200814cb3ed632 497 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 265 391 8.4E-28 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_03405 aeafa584a45935196a200814cb3ed632 497 Gene3D G3DSA:1.10.8.60 394 487 5.7E-10 T 12-10-2018 R615_03405 aeafa584a45935196a200814cb3ed632 497 Gene3D G3DSA:3.40.50.300 226 393 3.3E-35 T 12-10-2018 R615_03405 aeafa584a45935196a200814cb3ed632 497 SMART SM00382 261 394 1.4E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_03405 aeafa584a45935196a200814cb3ed632 497 SUPERFAMILY SSF52540 87 208 4.44E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03405 aeafa584a45935196a200814cb3ed632 497 SUPERFAMILY SSF52540 232 465 4.83E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09140 e55bb97d46e33c07cbc42175d82985ac 299 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 283 5.3E-57 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_09140 e55bb97d46e33c07cbc42175d82985ac 299 SUPERFAMILY SSF161111 8 200 1.44E-45 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09140 e55bb97d46e33c07cbc42175d82985ac 299 Pfam PF01545 Cation efflux family 15 198 1.0E-38 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_09140 e55bb97d46e33c07cbc42175d82985ac 299 Gene3D G3DSA:1.20.1510.10 10 199 1.4E-38 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09140 e55bb97d46e33c07cbc42175d82985ac 299 SUPERFAMILY SSF160240 206 281 1.16E-6 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 SMART SM00345 9 68 9.8E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 SUPERFAMILY SSF46785 5 72 8.92E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 Gene3D G3DSA:3.90.1150.10 121 463 6.9E-84 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 Gene3D G3DSA:1.10.10.10 2 69 6.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 Gene3D G3DSA:3.40.640.10 140 359 6.9E-84 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 SUPERFAMILY SSF53383 125 463 9.11E-77 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 1.5E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_00180 139b6b5014d8ac5baddbc1866eeaaa71 464 Pfam PF00155 Aminotransferase class I and II 132 451 1.7E-32 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_09395 87119ef33dc05c70b7bb229c5101a418 312 SUPERFAMILY SSF53474 51 310 3.71E-35 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09395 87119ef33dc05c70b7bb229c5101a418 312 Gene3D G3DSA:3.40.50.1820 15 201 2.4E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09395 87119ef33dc05c70b7bb229c5101a418 312 Pfam PF00561 alpha/beta hydrolase fold 56 177 7.0E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 SUPERFAMILY SSF53335 12 604 3.22E-138 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 Pfam PF02384 N-6 DNA Methylase 204 565 2.8E-113 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 Pfam PF12161 HsdM N-terminal domain 13 192 3.8E-23 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 Gene3D G3DSA:3.40.50.150 205 509 2.3E-116 T 12-10-2018 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 228 244 2.3E-19 T 12-10-2018 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 325 337 2.3E-19 T 12-10-2018 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 251 265 2.3E-19 T 12-10-2018 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 359 383 2.3E-19 T 12-10-2018 R615_06475 33dfc421ecaca457beffe86b8c1fc4fb 605 Gene3D G3DSA:1.20.1260.30 1 195 6.1E-57 T 12-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 2.2E-168 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 Gene3D G3DSA:1.20.58.410 4 97 5.1E-7 T 12-10-2018 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 SUPERFAMILY SSF75620 12 355 5.1E-136 T 12-10-2018 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 Gene3D G3DSA:3.30.70.1660 113 344 2.9E-96 T 12-10-2018 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 Pfam PF03462 PCRF domain 13 205 2.0E-73 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 SMART SM00937 66 180 6.2E-62 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 Pfam PF00472 RF-1 domain 214 323 9.8E-42 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 41.764 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 R615_13235 43a817f9af59e33bb33e8f5f90fc0532 361 Gene3D G3DSA:3.30.160.20 212 299 2.9E-96 T 12-10-2018 R615_17295 9a308c6a103b5e61c6dbfac884c59287 195 Gene3D G3DSA:2.40.160.20 27 190 2.1E-13 T 12-10-2018 R615_17295 9a308c6a103b5e61c6dbfac884c59287 195 SUPERFAMILY SSF56925 26 186 8.63E-10 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_10790 583a6e9e38c4bcd12de43efb91d94efe 788 Gene3D G3DSA:1.20.1640.10 179 388 2.3E-14 T 12-10-2018 R615_10790 583a6e9e38c4bcd12de43efb91d94efe 788 Gene3D G3DSA:1.20.1640.10 588 770 4.5E-14 T 12-10-2018 R615_10790 583a6e9e38c4bcd12de43efb91d94efe 788 SUPERFAMILY SSF82866 567 757 1.57E-32 T 12-10-2018 R615_10790 583a6e9e38c4bcd12de43efb91d94efe 788 SUPERFAMILY SSF82866 183 374 1.83E-33 T 12-10-2018 R615_10790 583a6e9e38c4bcd12de43efb91d94efe 788 Pfam PF03176 MMPL family 570 755 3.3E-14 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_10790 583a6e9e38c4bcd12de43efb91d94efe 788 Pfam PF03176 MMPL family 128 374 4.4E-24 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_13970 b80d9bde758ebcb02d3b857255232ca8 300 Pfam PF01478 Type IV leader peptidase family 149 258 3.3E-26 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 R615_13970 b80d9bde758ebcb02d3b857255232ca8 300 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 28 139 2.9E-32 T 12-10-2018 IPR010627 Peptidase A24A, N-terminal R615_13970 b80d9bde758ebcb02d3b857255232ca8 300 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 226 237 9.7E-24 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial R615_13970 b80d9bde758ebcb02d3b857255232ca8 300 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 238 253 9.7E-24 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial R615_13970 b80d9bde758ebcb02d3b857255232ca8 300 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 158 175 9.7E-24 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial R615_13970 b80d9bde758ebcb02d3b857255232ca8 300 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 225 9.7E-24 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial R615_02655 f8d78c097488e315aa65592a4c265777 237 Gene3D G3DSA:2.40.50.580 1 80 5.7E-31 T 12-10-2018 R615_02655 f8d78c097488e315aa65592a4c265777 237 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 237 51.53 T 12-10-2018 IPR005224 Sugar fermentation stimulation protein R615_02655 f8d78c097488e315aa65592a4c265777 237 Gene3D G3DSA:3.40.1350.60 81 237 3.3E-47 T 12-10-2018 R615_02655 f8d78c097488e315aa65592a4c265777 237 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 6 234 8.2E-61 T 12-10-2018 IPR005224 Sugar fermentation stimulation protein R615_02655 f8d78c097488e315aa65592a4c265777 237 Pfam PF03749 Sugar fermentation stimulation protein 13 228 2.7E-71 T 12-10-2018 IPR005224 Sugar fermentation stimulation protein R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 PIRSF PIRSF005719 1 1166 1.7E-266 T 12-10-2018 IPR024704 Structural maintenance of chromosomes protein R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Gene3D G3DSA:3.40.50.300 900 1167 2.4E-46 T 12-10-2018 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Gene3D G3DSA:3.40.50.300 1 243 2.9E-56 T 12-10-2018 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Pfam PF06470 SMC proteins Flexible Hinge Domain 525 618 1.1E-7 T 12-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1160 22.775 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Gene3D G3DSA:3.30.70.1620 578 648 3.3E-6 T 12-10-2018 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Gene3D G3DSA:1.20.1060.20 525 660 3.3E-6 T 12-10-2018 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 SUPERFAMILY SSF52540 1 1143 1.31E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 SMART SM00968 521 619 1.5E-4 T 12-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 SUPERFAMILY SSF75553 485 666 5.75E-11 T 12-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1151 9.5E-68 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal R615_11535 f4bfe18ba2ee4c5cccee7697d2fac4c7 1167 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1158 0.0 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 14 414 4.8E-205 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 5 417 52.783 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 SMART SM00994 15 54 2.5E-24 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 SMART SM00382 114 335 7.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 SMART SM01086 319 414 2.1E-30 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 396 3.1E-15 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Pfam PF06689 ClpX C4-type zinc finger 16 53 3.9E-20 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Gene3D G3DSA:3.40.50.300 61 317 4.8E-109 T 12-10-2018 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Gene3D G3DSA:3.30.50.30 5 55 1.1E-25 T 12-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 SUPERFAMILY SSF57716 16 51 1.15E-11 T 12-10-2018 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Pfam PF07724 AAA domain (Cdc48 subfamily) 115 312 4.6E-49 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 SUPERFAMILY SSF52540 64 404 7.64E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08355 c2048b419eae0e2cc20cd7e3446193fa 428 Gene3D G3DSA:1.10.8.60 318 425 7.1E-39 T 12-10-2018 R615_13095 1e75a63396ac497a2696a5dcde708382 1224 Pfam PF13289 SIR2-like domain 117 250 3.3E-22 T 12-10-2018 IPR039444 SIR2-like domain R615_13095 1e75a63396ac497a2696a5dcde708382 1224 SUPERFAMILY SSF52467 91 217 7.52E-5 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily R615_01330 5d422110a2725da5f4d54374023847ad 460 SUPERFAMILY SSF52283 4 460 6.23E-108 T 12-10-2018 R615_01330 5d422110a2725da5f4d54374023847ad 460 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 218 235 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 196 372 8.4E-59 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 PIRSF PIRSF001109 1 460 1.1E-181 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 Gene3D G3DSA:3.40.50.720 203 370 9.3E-71 T 12-10-2018 R615_01330 5d422110a2725da5f4d54374023847ad 460 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 146 2.4E-72 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 7 452 4.5E-156 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 Gene3D G3DSA:3.40.50.1480 371 460 2.4E-31 T 12-10-2018 R615_01330 5d422110a2725da5f4d54374023847ad 460 SMART SM00997 196 372 6.6E-84 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 Gene3D G3DSA:3.40.50.1480 4 202 1.6E-91 T 12-10-2018 R615_01330 5d422110a2725da5f4d54374023847ad 460 SMART SM00996 6 459 1.5E-278 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 78 92 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 R615_01330 5d422110a2725da5f4d54374023847ad 460 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 2 452 44.059 T 12-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 R615_01330 5d422110a2725da5f4d54374023847ad 460 SUPERFAMILY SSF51735 196 373 7.71E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 540 559 5.1E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 574 587 5.1E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 603 618 5.1E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 469 483 5.1E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 SUPERFAMILY SSF55957 737 829 1.23E-15 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 SUPERFAMILY SSF53738 627 734 1.61E-29 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 628 737 4.3E-19 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 470 479 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 764 819 2.8E-6 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Gene3D G3DSA:3.40.120.10 542 619 4.2E-32 T 12-10-2018 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 381 510 7.7E-26 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 SUPERFAMILY SSF53738 524 625 5.89E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 SUPERFAMILY SSF53738 379 511 1.41E-31 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Gene3D G3DSA:3.30.310.50 739 832 6.8E-22 T 12-10-2018 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Gene3D G3DSA:3.40.120.10 371 522 6.5E-45 T 12-10-2018 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Gene3D G3DSA:3.40.120.10 621 738 2.1E-38 T 12-10-2018 R615_00930 e894db4fb0224d2c5ccb65cd00e24107 832 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 526 623 4.2E-26 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_13520 2369649953377d1408b9841d243637b3 296 SUPERFAMILY SSF74653 210 292 1.57E-7 T 12-10-2018 R615_13520 2369649953377d1408b9841d243637b3 296 Gene3D G3DSA:3.30.1150.10 183 292 2.9E-6 T 12-10-2018 R615_09020 1242c665cc7d3e72d9a68b4bc2f96e2b 171 Pfam PF04214 Protein of unknown function, DUF 68 137 5.5E-27 T 12-10-2018 IPR007332 Protein of unknown function DUF411 R615_04865 ca1542f9430a242a59a738c0d4305bac 374 Gene3D G3DSA:3.40.50.720 6 338 1.1E-166 T 12-10-2018 R615_04865 ca1542f9430a242a59a738c0d4305bac 374 Gene3D G3DSA:3.90.25.10 194 352 1.1E-166 T 12-10-2018 R615_04865 ca1542f9430a242a59a738c0d4305bac 374 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 4 357 56.074 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 R615_04865 ca1542f9430a242a59a738c0d4305bac 374 SUPERFAMILY SSF51735 4 353 4.28E-89 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04865 ca1542f9430a242a59a738c0d4305bac 374 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 347 8.0E-160 T 12-10-2018 IPR016040 NAD(P)-binding domain R615_04865 ca1542f9430a242a59a738c0d4305bac 374 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 4 354 8.7E-179 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 R615_00910 1d166d32bc7829b6166e15670e0eca9c 215 Gene3D G3DSA:3.40.50.2020 1 214 5.0E-74 T 12-10-2018 R615_00910 1d166d32bc7829b6166e15670e0eca9c 215 Pfam PF00156 Phosphoribosyl transferase domain 46 146 2.7E-11 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_00910 1d166d32bc7829b6166e15670e0eca9c 215 SUPERFAMILY SSF53271 1 212 6.96E-46 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_00910 1d166d32bc7829b6166e15670e0eca9c 215 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 1.1E-56 T 12-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_00910 1d166d32bc7829b6166e15670e0eca9c 215 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 215 33.223 T 12-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 R615_07655 6d3233672391d78ccff623bf914cb95e 234 Gene3D G3DSA:3.30.2010.10 136 234 5.7E-16 T 12-10-2018 R615_07655 6d3233672391d78ccff623bf914cb95e 234 Pfam PF01863 Protein of unknown function DUF45 30 228 5.7E-42 T 12-10-2018 IPR002725 Protein of unknown function DUF45 R615_06140 7b06a5e4e9e2ee30a0e3edf733859954 105 SUPERFAMILY SSF52833 3 87 6.93E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_06140 7b06a5e4e9e2ee30a0e3edf733859954 105 Pfam PF10262 Rdx family 5 78 7.1E-25 T 12-10-2018 IPR011893 Selenoprotein, Rdx-type R615_06140 7b06a5e4e9e2ee30a0e3edf733859954 105 Gene3D G3DSA:3.40.30.10 1 101 6.3E-32 T 12-10-2018 R615_06140 7b06a5e4e9e2ee30a0e3edf733859954 105 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 6 77 4.2E-13 T 12-10-2018 IPR011893 Selenoprotein, Rdx-type R615_07195 b86b9a0e85573204f2a50c34313b065d 634 SUPERFAMILY SSF54211 236 491 1.06E-95 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_07195 b86b9a0e85573204f2a50c34313b065d 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 27 36 - T 12-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 R615_07195 b86b9a0e85573204f2a50c34313b065d 634 SUPERFAMILY SSF110942 517 630 4.05E-32 T 12-10-2018 IPR037196 HSP90, C-terminal domain R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 77 94 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 122 144 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 174 191 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 192 210 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 28 50 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 7 27 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PRINTS PR00775 90kDa heat shock protein signature 95 112 1.7E-62 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Gene3D G3DSA:3.40.50.11260 403 492 6.8E-31 T 12-10-2018 R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Gene3D G3DSA:1.20.120.790 497 631 1.1E-37 T 12-10-2018 IPR037196 HSP90, C-terminal domain R615_07195 b86b9a0e85573204f2a50c34313b065d 634 SUPERFAMILY SSF55874 7 214 7.47E-67 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 630 31.927 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 R615_07195 b86b9a0e85573204f2a50c34313b065d 634 PIRSF PIRSF002583 2 634 2.0E-215 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Gene3D G3DSA:3.30.230.80 235 402 2.4E-67 T 12-10-2018 R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 172 5.1E-14 T 12-10-2018 R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Gene3D G3DSA:3.30.565.10 1 229 6.0E-79 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07195 b86b9a0e85573204f2a50c34313b065d 634 SMART SM00387 29 186 7.8E-10 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07195 b86b9a0e85573204f2a50c34313b065d 634 Pfam PF00183 Hsp90 protein 228 630 4.3E-127 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 SUPERFAMILY SSF118215 3 408 1.15E-114 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 Gene3D G3DSA:1.10.3860.10 1 413 4.4E-132 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 232 251 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 334 353 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 361 381 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 150 172 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 197 216 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 PRINTS PR00173 Glutamate-aspartate symporter signature 299 325 1.3E-47 T 12-10-2018 R615_00835 0353164ccd9a1b64dad2ed537a5400cc 423 Pfam PF00375 Sodium:dicarboxylate symporter family 3 406 4.9E-126 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 1.5E-53 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 SUPERFAMILY SSF50193 1 122 1.83E-50 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.401 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 12-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 Gene3D G3DSA:2.40.150.20 1 122 1.8E-53 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 SMART SM01374 1 122 1.8E-84 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 R615_16130 1e5a236ce8ca93c09e48dd51f61b08a0 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 5.3E-57 T 12-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 R615_10620 acce4604139d2c52799d4d0493a96b28 295 Pfam PF00665 Integrase core domain 135 248 1.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 R615_10620 acce4604139d2c52799d4d0493a96b28 295 Gene3D G3DSA:3.30.420.10 132 281 2.1E-17 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_10620 acce4604139d2c52799d4d0493a96b28 295 SUPERFAMILY SSF53098 132 291 4.86E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_10620 acce4604139d2c52799d4d0493a96b28 295 Pfam PF13276 HTH-like domain 53 108 9.0E-19 T 12-10-2018 IPR025948 HTH-like domain R615_10555 06212dd5affbe5e72b9ae9db6ee8612f 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 1.4E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_10555 06212dd5affbe5e72b9ae9db6ee8612f 199 SUPERFAMILY SSF46689 2 74 1.03E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_10555 06212dd5affbe5e72b9ae9db6ee8612f 199 Gene3D G3DSA:1.10.357.10 68 194 4.8E-19 T 12-10-2018 R615_10555 06212dd5affbe5e72b9ae9db6ee8612f 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site R615_10555 06212dd5affbe5e72b9ae9db6ee8612f 199 Gene3D G3DSA:1.10.10.60 1 65 1.7E-23 T 12-10-2018 R615_10555 06212dd5affbe5e72b9ae9db6ee8612f 199 SUPERFAMILY SSF48498 79 192 9.3E-18 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 234 4.2E-77 T 12-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 Pfam PF01259 SAICAR synthetase 7 230 9.1E-61 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 Gene3D G3DSA:3.30.200.20 7 231 2.9E-91 T 12-10-2018 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 SUPERFAMILY SSF56104 2 232 2.78E-78 T 12-10-2018 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 31.151 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_07035 96fbe4cb08d7c653892c99b99ac7b1f5 236 Gene3D G3DSA:3.30.470.20 85 220 2.9E-91 T 12-10-2018 R615_01000 cf88219f388aaf8717d30bb8c11a6500 480 Gene3D G3DSA:3.40.605.10 26 450 1.6E-157 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_01000 cf88219f388aaf8717d30bb8c11a6500 480 Gene3D G3DSA:3.40.309.10 228 430 1.6E-157 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_01000 cf88219f388aaf8717d30bb8c11a6500 480 Pfam PF00171 Aldehyde dehydrogenase family 26 448 1.1E-88 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_01000 cf88219f388aaf8717d30bb8c11a6500 480 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 224 231 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 R615_01000 cf88219f388aaf8717d30bb8c11a6500 480 PIRSF PIRSF036492 4 480 8.1E-164 T 12-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 R615_01000 cf88219f388aaf8717d30bb8c11a6500 480 SUPERFAMILY SSF53720 14 476 1.7E-116 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_08825 30dce1447192a1698581ded28511a72f 122 Gene3D G3DSA:3.30.1300.30 35 120 4.2E-18 T 12-10-2018 R615_08825 30dce1447192a1698581ded28511a72f 122 SUPERFAMILY SSF54523 41 119 1.18E-16 T 12-10-2018 R615_08825 30dce1447192a1698581ded28511a72f 122 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 6.0E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08825 30dce1447192a1698581ded28511a72f 122 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 27 3.4E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08825 30dce1447192a1698581ded28511a72f 122 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08825 30dce1447192a1698581ded28511a72f 122 TIGRFAM TIGR01707 gspI: type II secretion system protein I 8 103 3.9E-22 T 12-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 R615_08825 30dce1447192a1698581ded28511a72f 122 Pfam PF02501 Type II secretion system (T2SS), protein I 42 119 1.1E-20 T 12-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 R615_16195 430ec45503a316e1b5c429c0241a6997 697 SUPERFAMILY SSF54980 409 487 2.88E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_16195 430ec45503a316e1b5c429c0241a6997 697 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-17 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 PRINTS PR00315 GTP-binding elongation factor signature 137 146 2.0E-17 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 PRINTS PR00315 GTP-binding elongation factor signature 101 112 2.0E-17 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 PRINTS PR00315 GTP-binding elongation factor signature 85 95 2.0E-17 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 PRINTS PR00315 GTP-binding elongation factor signature 12 25 2.0E-17 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 SUPERFAMILY SSF54211 489 603 9.86E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_16195 430ec45503a316e1b5c429c0241a6997 697 SMART SM00889 487 604 8.1E-69 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 Gene3D G3DSA:3.30.70.870 440 490 5.3E-27 T 12-10-2018 R615_16195 430ec45503a316e1b5c429c0241a6997 697 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_16195 430ec45503a316e1b5c429c0241a6997 697 SMART SM00838 606 693 1.0E-53 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_16195 430ec45503a316e1b5c429c0241a6997 697 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.9E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 1.2E-35 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 Pfam PF14492 Elongation Factor G, domain II 411 485 1.1E-33 T 12-10-2018 R615_16195 430ec45503a316e1b5c429c0241a6997 697 SUPERFAMILY SSF52540 6 288 1.31E-108 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16195 430ec45503a316e1b5c429c0241a6997 697 Hamap MF_00054_B Elongation factor G [fusA]. 6 697 111.178 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16195 430ec45503a316e1b5c429c0241a6997 697 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 696 0.0 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16195 430ec45503a316e1b5c429c0241a6997 697 Gene3D G3DSA:3.30.70.240 610 680 9.2E-86 T 12-10-2018 R615_16195 430ec45503a316e1b5c429c0241a6997 697 Pfam PF00679 Elongation factor G C-terminus 606 692 3.4E-28 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_16195 430ec45503a316e1b5c429c0241a6997 697 Gene3D G3DSA:3.40.50.300 1 300 5.5E-117 T 12-10-2018 R615_16195 430ec45503a316e1b5c429c0241a6997 697 SUPERFAMILY SSF50447 271 411 3.3E-34 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16195 430ec45503a316e1b5c429c0241a6997 697 SUPERFAMILY SSF54980 609 695 7.19E-27 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_16195 430ec45503a316e1b5c429c0241a6997 697 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 9.9E-68 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16195 430ec45503a316e1b5c429c0241a6997 697 Gene3D G3DSA:2.40.30.10 301 423 2.3E-47 T 12-10-2018 R615_16195 430ec45503a316e1b5c429c0241a6997 697 Gene3D G3DSA:3.30.230.10 491 693 9.2E-86 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_16195 430ec45503a316e1b5c429c0241a6997 697 Pfam PF03764 Elongation factor G, domain IV 486 602 1.7E-44 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 R615_09995 784643380b203d7a83dd48f49db928ff 406 Gene3D G3DSA:3.30.559.10 174 406 5.9E-97 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 R615_09995 784643380b203d7a83dd48f49db928ff 406 SUPERFAMILY SSF51230 1 95 1.16E-24 T 12-10-2018 IPR011053 Single hybrid motif R615_09995 784643380b203d7a83dd48f49db928ff 406 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 405 2.2E-179 T 12-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 R615_09995 784643380b203d7a83dd48f49db928ff 406 SUPERFAMILY SSF47005 97 142 7.72E-12 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 R615_09995 784643380b203d7a83dd48f49db928ff 406 Gene3D G3DSA:4.10.320.10 105 144 4.2E-15 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 R615_09995 784643380b203d7a83dd48f49db928ff 406 SUPERFAMILY SSF52777 178 405 2.18E-90 T 12-10-2018 R615_09995 784643380b203d7a83dd48f49db928ff 406 Pfam PF02817 e3 binding domain 103 138 7.1E-14 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 R615_09995 784643380b203d7a83dd48f49db928ff 406 Gene3D G3DSA:2.40.50.100 2 102 1.8E-22 T 12-10-2018 R615_09995 784643380b203d7a83dd48f49db928ff 406 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 R615_09995 784643380b203d7a83dd48f49db928ff 406 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 176 404 1.2E-81 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 R615_09995 784643380b203d7a83dd48f49db928ff 406 Pfam PF00364 Biotin-requiring enzyme 4 75 6.6E-19 T 12-10-2018 IPR000089 Biotin/lipoyl attachment R615_05100 78f2b62815923a3e3fdaa17230f40920 572 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 42 570 3.3E-92 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 Gene3D G3DSA:3.30.300.30 147 252 3.4E-13 T 12-10-2018 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 PIRSF PIRSF004862 34 572 4.4E-138 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 Pfam PF08345 Flagellar M-ring protein C-terminal 281 450 2.9E-46 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal R615_05100 78f2b62815923a3e3fdaa17230f40920 572 PRINTS PR01009 Flagellar M-ring protein signature 374 398 6.0E-37 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 PRINTS PR01009 Flagellar M-ring protein signature 223 241 6.0E-37 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 PRINTS PR01009 Flagellar M-ring protein signature 180 194 6.0E-37 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 PRINTS PR01009 Flagellar M-ring protein signature 294 312 6.0E-37 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 PRINTS PR01009 Flagellar M-ring protein signature 148 166 6.0E-37 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 R615_05100 78f2b62815923a3e3fdaa17230f40920 572 Pfam PF01514 Secretory protein of YscJ/FliF family 57 247 1.9E-66 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF R615_02445 fda125aa479d0e2904f52b43b235061d 341 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 16 67 4.7E-15 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain R615_02445 fda125aa479d0e2904f52b43b235061d 341 SUPERFAMILY SSF103088 163 272 1.27E-21 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_02445 fda125aa479d0e2904f52b43b235061d 341 Gene3D G3DSA:3.30.1330.60 106 288 1.2E-46 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_02445 fda125aa479d0e2904f52b43b235061d 341 Pfam PF00691 OmpA family 167 264 2.7E-13 T 12-10-2018 IPR006665 OmpA-like domain R615_12555 3982676eff71139bef636efa61b88e78 166 Pfam PF05194 UreE urease accessory protein, C-terminal domain 74 165 2.0E-25 T 12-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 R615_12555 3982676eff71139bef636efa61b88e78 166 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 140 19.876 T 12-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 R615_12555 3982676eff71139bef636efa61b88e78 166 PIRSF PIRSF036402 2 166 4.2E-33 T 12-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 R615_12555 3982676eff71139bef636efa61b88e78 166 Pfam PF02814 UreE urease accessory protein, N-terminal domain 8 66 1.3E-11 T 12-10-2018 IPR004029 UreE urease accessory, N-terminal R615_12555 3982676eff71139bef636efa61b88e78 166 SUPERFAMILY SSF69737 73 139 8.63E-20 T 12-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 R615_12555 3982676eff71139bef636efa61b88e78 166 Gene3D G3DSA:2.60.260.20 1 71 1.4E-18 T 12-10-2018 R615_12555 3982676eff71139bef636efa61b88e78 166 SMART SM00988 1 66 2.7E-18 T 12-10-2018 IPR004029 UreE urease accessory, N-terminal R615_12555 3982676eff71139bef636efa61b88e78 166 Gene3D G3DSA:3.30.70.790 73 142 1.1E-27 T 12-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 R615_12555 3982676eff71139bef636efa61b88e78 166 SUPERFAMILY SSF69287 1 68 3.4E-12 T 12-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 SMART SM00862 146 221 8.4E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 Gene3D G3DSA:3.40.50.2300 1 121 7.0E-39 T 12-10-2018 R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 SMART SM00448 1 112 1.9E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 SUPERFAMILY SSF52172 1 118 1.32E-37 T 12-10-2018 IPR011006 CheY-like superfamily R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 Gene3D G3DSA:1.10.10.10 124 227 6.2E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 Pfam PF00072 Response regulator receiver domain 4 112 3.5E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 3.6E-101 T 12-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 3.7E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_08975 951f03e70df2f77e154b1b8a457a19ad 228 SUPERFAMILY SSF46894 127 222 5.95E-29 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 2.1E-23 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 2.1E-23 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 2.1E-23 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 369 382 2.1E-23 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 2.1E-23 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 Gene3D G3DSA:3.20.20.10 34 275 6.2E-148 T 12-10-2018 IPR029066 PLP-binding barrel R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 Gene3D G3DSA:2.40.37.10 16 408 6.2E-148 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 30 369 3.3E-25 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 SUPERFAMILY SSF51419 26 282 5.52E-78 T 12-10-2018 IPR029066 PLP-binding barrel R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 412 40.952 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 280 4.4E-71 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 6.0E-31 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 379 401 6.0E-31 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 6.0E-31 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 6.0E-31 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 SUPERFAMILY SSF50621 253 412 3.56E-54 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 411 2.7E-156 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 241 - T 12-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site R615_01190 c9e1fb4ad58f011b3a19904b34d121b7 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 12-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site R615_07125 d5771378cc5675df018797025a714128 318 Gene3D G3DSA:3.40.50.300 48 313 1.2E-67 T 12-10-2018 R615_07125 d5771378cc5675df018797025a714128 318 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 63 181 7.1E-5 T 12-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 R615_07125 d5771378cc5675df018797025a714128 318 SUPERFAMILY SSF52540 61 311 7.54E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03580 2b7b70523ea22b693f8e1d10126d0cc6 213 Pfam PF03846 Cell division inhibitor SulA 46 133 1.2E-10 T 12-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 R615_03580 2b7b70523ea22b693f8e1d10126d0cc6 213 SUPERFAMILY SSF52540 46 157 1.81E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03580 2b7b70523ea22b693f8e1d10126d0cc6 213 Gene3D G3DSA:3.40.50.300 46 160 1.1E-37 T 12-10-2018 R615_03580 2b7b70523ea22b693f8e1d10126d0cc6 213 PIRSF PIRSF037290 1 212 5.5E-58 T 12-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 R615_13900 12d78beb2990409dea293505a09a3134 222 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 13 192 5.3E-42 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 R615_13900 12d78beb2990409dea293505a09a3134 222 Gene3D G3DSA:3.40.50.1240 6 202 9.5E-44 T 12-10-2018 IPR029033 Histidine phosphatase superfamily R615_13900 12d78beb2990409dea293505a09a3134 222 SUPERFAMILY SSF53254 10 201 2.95E-44 T 12-10-2018 IPR029033 Histidine phosphatase superfamily R615_13900 12d78beb2990409dea293505a09a3134 222 PIRSF PIRSF000709 5 218 3.3E-7 T 12-10-2018 R615_13900 12d78beb2990409dea293505a09a3134 222 SMART SM00855 10 161 2.7E-11 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 R615_08520 2dfae99249b17bde9578c20702f18256 202 Gene3D G3DSA:3.30.2350.10 1 200 6.4E-60 T 12-10-2018 R615_08520 2dfae99249b17bde9578c20702f18256 202 SUPERFAMILY SSF55120 2 201 4.64E-56 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_08520 2dfae99249b17bde9578c20702f18256 202 Pfam PF00849 RNA pseudouridylate synthase 9 154 1.2E-25 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_08520 2dfae99249b17bde9578c20702f18256 202 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 45 59 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_14080 2baf3012162fd524df8334b0d4caf275 324 SUPERFAMILY SSF56655 6 321 1.31E-103 T 12-10-2018 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PIRSF PIRSF500210 7 324 1.0E-115 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 16 182 1.5E-55 T 12-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 195 222 6.0E-57 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 169 192 6.0E-57 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 22 49 6.0E-57 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 297 322 6.0E-57 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 59 85 6.0E-57 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 138 161 6.0E-57 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 323 42.37 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_14080 2baf3012162fd524df8334b0d4caf275 324 Gene3D G3DSA:3.40.190.80 186 323 9.0E-47 T 12-10-2018 R615_14080 2baf3012162fd524df8334b0d4caf275 324 Gene3D G3DSA:3.30.540.10 5 185 2.9E-62 T 12-10-2018 R615_14080 2baf3012162fd524df8334b0d4caf275 324 PIRSF PIRSF000904 5 324 5.0E-113 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 R615_07900 34a51d973b652671c033fee7e84d5d26 639 Pfam PF01553 Acyltransferase 455 581 3.5E-24 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_07900 34a51d973b652671c033fee7e84d5d26 639 Pfam PF05977 Transmembrane secretion effector 77 317 3.2E-10 T 12-10-2018 IPR010290 Transmembrane secretion effector R615_07900 34a51d973b652671c033fee7e84d5d26 639 SUPERFAMILY SSF69593 366 585 1.44E-30 T 12-10-2018 R615_07900 34a51d973b652671c033fee7e84d5d26 639 SUPERFAMILY SSF103473 14 440 1.01E-26 T 12-10-2018 IPR036259 MFS transporter superfamily R615_07900 34a51d973b652671c033fee7e84d5d26 639 Gene3D G3DSA:1.20.1250.20 25 435 1.0E-25 T 12-10-2018 R615_07900 34a51d973b652671c033fee7e84d5d26 639 SMART SM00563 469 585 5.0E-27 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 SUPERFAMILY SSF52096 24 205 6.63E-72 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 15 205 1.2E-100 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 Pfam PF00574 Clp protease 26 205 1.5E-86 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 4.7E-50 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 4.7E-50 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 4.7E-50 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 4.7E-50 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 4.7E-50 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 Gene3D G3DSA:3.90.226.10 3 207 2.8E-83 T 12-10-2018 R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 12-10-2018 IPR033135 ClpP, histidine active site R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 12-10-2018 IPR018215 ClpP, Ser active site R615_08350 0366684d4f913647886e4b3a5ca9bdf9 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 42.507 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_06195 91999cee2a1918ecddc45f19ef8ccb44 325 SUPERFAMILY SSF55073 149 302 2.82E-46 T 12-10-2018 IPR029787 Nucleotide cyclase R615_06195 91999cee2a1918ecddc45f19ef8ccb44 325 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 143 301 1.5E-50 T 12-10-2018 IPR000160 GGDEF domain R615_06195 91999cee2a1918ecddc45f19ef8ccb44 325 Pfam PF00990 Diguanylate cyclase, GGDEF domain 144 299 9.9E-46 T 12-10-2018 IPR000160 GGDEF domain R615_06195 91999cee2a1918ecddc45f19ef8ccb44 325 Gene3D G3DSA:3.30.70.270 139 307 4.2E-55 T 12-10-2018 R615_06195 91999cee2a1918ecddc45f19ef8ccb44 325 SMART SM00267 134 304 1.4E-58 T 12-10-2018 IPR000160 GGDEF domain R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 Gene3D G3DSA:3.90.180.10 20 325 1.6E-108 T 12-10-2018 R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 Pfam PF00107 Zinc-binding dehydrogenase 160 273 8.9E-15 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 SUPERFAMILY SSF50129 5 146 2.04E-37 T 12-10-2018 IPR011032 GroES-like superfamily R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 Gene3D G3DSA:3.40.50.720 127 295 1.6E-108 T 12-10-2018 R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 SUPERFAMILY SSF51735 118 283 3.64E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 87 1.2E-5 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 5 326 2.4E-122 T 12-10-2018 IPR014188 Acrylyl-CoA reductase AcuI R615_08435 9f6ed3d37b12a0adf69bbff43d60af67 330 SMART SM00829 14 325 1.3E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 R615_02150 ad649324954ba2a5406402da00b0bca6 270 SUPERFAMILY SSF52540 6 235 1.08E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02150 ad649324954ba2a5406402da00b0bca6 270 Pfam PF00005 ABC transporter 23 172 1.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_02150 ad649324954ba2a5406402da00b0bca6 270 Gene3D G3DSA:3.40.50.300 7 251 8.7E-65 T 12-10-2018 R615_02150 ad649324954ba2a5406402da00b0bca6 270 SMART SM00382 32 225 1.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02150 ad649324954ba2a5406402da00b0bca6 270 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 SUPERFAMILY SSF53383 489 959 1.34E-90 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_13545 544f4dbb10ef595adb7c835e58095bef 966 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 26 958 0.0 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 Gene3D G3DSA:3.90.1150.10 773 913 2.5E-40 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 Gene3D G3DSA:3.40.640.10 102 360 6.6E-101 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 Gene3D G3DSA:3.40.640.10 531 761 2.5E-56 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 Pfam PF02347 Glycine cleavage system P-protein 26 445 3.4E-175 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 Pfam PF02347 Glycine cleavage system P-protein 481 736 1.6E-5 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 R615_13545 544f4dbb10ef595adb7c835e58095bef 966 SUPERFAMILY SSF53383 26 447 1.28E-96 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_13545 544f4dbb10ef595adb7c835e58095bef 966 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 9 964 24.739 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 R615_05340 dacdcb6cc96843d97a684159f3845c95 246 SMART SM00862 166 242 1.7E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_05340 dacdcb6cc96843d97a684159f3845c95 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 242 5.1E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_05340 dacdcb6cc96843d97a684159f3845c95 246 Pfam PF00072 Response regulator receiver domain 16 125 5.2E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05340 dacdcb6cc96843d97a684159f3845c95 246 SUPERFAMILY SSF52172 10 132 2.7E-38 T 12-10-2018 IPR011006 CheY-like superfamily R615_05340 dacdcb6cc96843d97a684159f3845c95 246 Gene3D G3DSA:1.10.10.10 142 246 1.2E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05340 dacdcb6cc96843d97a684159f3845c95 246 SMART SM00448 14 124 1.3E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05340 dacdcb6cc96843d97a684159f3845c95 246 SUPERFAMILY SSF46894 144 243 4.54E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_05340 dacdcb6cc96843d97a684159f3845c95 246 Gene3D G3DSA:3.40.50.2300 7 133 1.9E-34 T 12-10-2018 R615_00055 c06b5397d68f5b84c8306ff77d59fe38 492 Pfam PF00924 Mechanosensitive ion channel 243 443 1.6E-40 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 R615_00055 c06b5397d68f5b84c8306ff77d59fe38 492 Gene3D G3DSA:2.30.30.60 302 350 7.9E-15 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily R615_00055 c06b5397d68f5b84c8306ff77d59fe38 492 SUPERFAMILY SSF50182 286 348 6.87E-12 T 12-10-2018 IPR010920 LSM domain superfamily R615_00055 c06b5397d68f5b84c8306ff77d59fe38 492 Gene3D G3DSA:3.30.70.100 352 441 5.6E-24 T 12-10-2018 R615_00055 c06b5397d68f5b84c8306ff77d59fe38 492 SUPERFAMILY SSF82689 351 454 1.44E-22 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 R615_00055 c06b5397d68f5b84c8306ff77d59fe38 492 SUPERFAMILY SSF82861 200 284 5.49E-13 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 R615_01480 54a1eeb372e9ff22fa7207476227e2b3 425 Gene3D G3DSA:3.10.450.350 162 403 4.9E-92 T 12-10-2018 R615_01480 54a1eeb372e9ff22fa7207476227e2b3 425 Gene3D G3DSA:3.10.450.350 54 131 5.4E-7 T 12-10-2018 R615_01480 54a1eeb372e9ff22fa7207476227e2b3 425 Pfam PF01551 Peptidase family M23 287 380 1.4E-32 T 12-10-2018 IPR016047 Peptidase M23 R615_01480 54a1eeb372e9ff22fa7207476227e2b3 425 SUPERFAMILY SSF51261 136 382 2.35E-71 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_01480 54a1eeb372e9ff22fa7207476227e2b3 425 Gene3D G3DSA:2.70.70.10 258 389 4.9E-92 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 11 232 37.971 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 PIRSF PIRSF005917 1 285 9.6E-104 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 Gene3D G3DSA:3.30.950.10 119 236 5.3E-41 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 89 100 - T 12-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 Gene3D G3DSA:3.40.1010.10 2 118 3.4E-45 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 12 281 1.1E-88 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 SUPERFAMILY SSF53790 10 230 2.22E-82 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 R615_13190 11fb819fc71565a17f3c5146d01dd3de 286 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 11 211 3.8E-34 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 SUPERFAMILY SSF58104 360 669 9.16E-67 T 12-10-2018 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 Gene3D G3DSA:1.10.287.950 338 670 2.8E-66 T 12-10-2018 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 SMART SM00304 338 392 5.2E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 456 634 1.4E-39 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 SMART SM00283 407 668 4.6E-63 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 534 563 1.4E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 1.4E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_13630 a323741ad80f2b6cbd92410bd249d1ff 670 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 505 532 1.4E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 842 854 8.0E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 826 842 8.0E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 812 826 8.0E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 Gene3D G3DSA:1.10.10.10 803 871 1.3E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 SUPERFAMILY SSF46894 807 867 4.42E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 Pfam PF00196 Bacterial regulatory proteins, luxR family 811 864 1.1E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 Gene3D G3DSA:3.40.50.300 5 159 7.8E-7 T 12-10-2018 R615_10385 c356d7b2cc11fc78f9d9aafeb19d66db 872 SMART SM00421 809 866 3.0E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_00640 2ad4523d90338d21be8490f718a78690 202 Pfam PF04542 Sigma-70 region 2 24 79 7.4E-12 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_00640 2ad4523d90338d21be8490f718a78690 202 Gene3D G3DSA:1.10.1740.10 4 82 6.7E-14 T 12-10-2018 R615_00640 2ad4523d90338d21be8490f718a78690 202 Pfam PF08281 Sigma-70, region 4 136 186 2.1E-9 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_00640 2ad4523d90338d21be8490f718a78690 202 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 190 2.4E-24 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_00640 2ad4523d90338d21be8490f718a78690 202 SUPERFAMILY SSF88946 13 88 1.28E-16 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_00640 2ad4523d90338d21be8490f718a78690 202 TIGRFAM TIGR02943 Sig70_famx1: RNA polymerase sigma-70 factor, TIGR02943 family 8 196 3.8E-64 T 12-10-2018 IPR014289 RNA polymerase sigma-24-related R615_00640 2ad4523d90338d21be8490f718a78690 202 Gene3D G3DSA:1.10.10.10 119 193 3.1E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00640 2ad4523d90338d21be8490f718a78690 202 SUPERFAMILY SSF88659 127 191 3.36E-13 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 Gene3D G3DSA:1.25.20.10 26 376 2.6E-78 T 12-10-2018 R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 Gene3D G3DSA:1.10.530.10 462 622 1.9E-47 T 12-10-2018 R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 Gene3D G3DSA:1.10.1240.20 394 461 1.6E-18 T 12-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 Pfam PF01464 Transglycosylase SLT domain 472 581 6.4E-28 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 SUPERFAMILY SSF48435 28 466 8.24E-92 T 12-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 Pfam PF14718 Soluble lytic murein transglycosylase L domain 398 461 1.2E-14 T 12-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 R615_03530 534d58ed2744068a73425bcbf90d8b4a 648 SUPERFAMILY SSF53955 467 614 4.97E-44 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_08970 060d622bdc307dc3199646f9256841d3 603 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 10 602 1.5E-276 T 12-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 R615_08970 060d622bdc307dc3199646f9256841d3 603 ProSitePatterns PS00079 Multicopper oxidases signature 1. 580 600 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site R615_08970 060d622bdc307dc3199646f9256841d3 603 ProSitePatterns PS00080 Multicopper oxidases signature 2. 585 596 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 R615_08970 060d622bdc307dc3199646f9256841d3 603 Gene3D G3DSA:2.60.40.420 482 603 3.8E-25 T 12-10-2018 IPR008972 Cupredoxin R615_08970 060d622bdc307dc3199646f9256841d3 603 Gene3D G3DSA:2.60.40.420 176 384 5.7E-40 T 12-10-2018 IPR008972 Cupredoxin R615_08970 060d622bdc307dc3199646f9256841d3 603 Pfam PF00394 Multicopper oxidase 180 356 1.3E-29 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 R615_08970 060d622bdc307dc3199646f9256841d3 603 ProSitePatterns PS00079 Multicopper oxidases signature 1. 145 165 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site R615_08970 060d622bdc307dc3199646f9256841d3 603 Pfam PF07731 Multicopper oxidase 490 602 6.9E-23 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 R615_08970 060d622bdc307dc3199646f9256841d3 603 SUPERFAMILY SSF49503 55 199 7.4E-42 T 12-10-2018 IPR008972 Cupredoxin R615_08970 060d622bdc307dc3199646f9256841d3 603 Gene3D G3DSA:2.60.40.420 41 169 6.2E-41 T 12-10-2018 IPR008972 Cupredoxin R615_08970 060d622bdc307dc3199646f9256841d3 603 SUPERFAMILY SSF49503 176 384 8.31E-52 T 12-10-2018 IPR008972 Cupredoxin R615_08970 060d622bdc307dc3199646f9256841d3 603 SUPERFAMILY SSF49503 443 602 2.26E-31 T 12-10-2018 IPR008972 Cupredoxin R615_08970 060d622bdc307dc3199646f9256841d3 603 Pfam PF07732 Multicopper oxidase 60 171 1.0E-40 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 R615_00415 1f2b8b019bb8f6dd0b354dd1a47820cc 372 Pfam PF15887 Putative zinc-binding metallo-peptidase 105 366 2.7E-100 T 12-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase R615_00415 1f2b8b019bb8f6dd0b354dd1a47820cc 372 Pfam PF10005 zinc-ribbon domain 4 99 3.8E-14 T 12-10-2018 IPR011201 Zinc-ribbon domain, bacteria R615_00415 1f2b8b019bb8f6dd0b354dd1a47820cc 372 PIRSF PIRSF012641 1 372 3.0E-116 T 12-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase R615_15560 6ed2432ceab93be2e9e5f4399db3af19 465 SUPERFAMILY SSF51556 74 389 1.08E-93 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_15560 6ed2432ceab93be2e9e5f4399db3af19 465 Gene3D G3DSA:2.30.40.10 40 437 8.5E-121 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_15560 6ed2432ceab93be2e9e5f4399db3af19 465 SUPERFAMILY SSF51338 349 463 5.61E-30 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_15560 6ed2432ceab93be2e9e5f4399db3af19 465 Gene3D G3DSA:3.20.20.140 75 389 8.5E-121 T 12-10-2018 R615_15560 6ed2432ceab93be2e9e5f4399db3af19 465 SUPERFAMILY SSF51338 17 89 4.17E-7 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_15560 6ed2432ceab93be2e9e5f4399db3af19 465 Pfam PF01979 Amidohydrolase family 71 436 2.1E-64 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 R615_06440 01dfe0b1f3d1d86cef2e81161778c79d 347 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 35 212 2.5E-16 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_06440 01dfe0b1f3d1d86cef2e81161778c79d 347 SMART SM00342 255 337 2.5E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_06440 01dfe0b1f3d1d86cef2e81161778c79d 347 Pfam PF12833 Helix-turn-helix domain 262 338 8.3E-14 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_06440 01dfe0b1f3d1d86cef2e81161778c79d 347 Gene3D G3DSA:1.10.10.60 236 343 3.0E-21 T 12-10-2018 R615_06440 01dfe0b1f3d1d86cef2e81161778c79d 347 SUPERFAMILY SSF46689 291 341 3.27E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_01900 c4bb54c961023a928b9dff6c09a3faf9 252 SUPERFAMILY SSF46626 16 216 7.37E-44 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_01900 c4bb54c961023a928b9dff6c09a3faf9 252 Gene3D G3DSA:1.10.760.10 24 217 3.5E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_01900 c4bb54c961023a928b9dff6c09a3faf9 252 Pfam PF02167 Cytochrome C1 family 31 251 2.4E-14 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 R615_07295 d01142293712603b2acdaa2a97b78a05 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 3 407 63.874 T 12-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 Pfam PF00970 Oxidoreductase FAD-binding domain 199 266 7.0E-10 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 R615_07295 d01142293712603b2acdaa2a97b78a05 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 6.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 242 251 6.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 216 6.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 314 325 6.3E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 Gene3D G3DSA:3.40.50.80 275 391 1.3E-31 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain R615_07295 d01142293712603b2acdaa2a97b78a05 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 1.5E-17 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 SUPERFAMILY SSF54292 38 124 3.82E-23 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 R615_07295 d01142293712603b2acdaa2a97b78a05 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 5 407 1.4E-216 T 12-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 R615_07295 d01142293712603b2acdaa2a97b78a05 407 SUPERFAMILY SSF52343 257 403 5.37E-37 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain R615_07295 d01142293712603b2acdaa2a97b78a05 407 SUPERFAMILY SSF63380 105 272 1.31E-36 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_07295 d01142293712603b2acdaa2a97b78a05 407 Gene3D G3DSA:2.40.30.10 126 264 7.0E-53 T 12-10-2018 R615_07295 d01142293712603b2acdaa2a97b78a05 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 40 115 3.1E-11 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 R615_07295 d01142293712603b2acdaa2a97b78a05 407 Gene3D G3DSA:3.10.20.30 35 125 3.5E-28 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_07295 d01142293712603b2acdaa2a97b78a05 407 PIRSF PIRSF000044 1 407 1.0E-216 T 12-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 SMART SM00304 163 218 6.7E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 Gene3D G3DSA:1.10.287.130 213 280 1.1E-14 T 12-10-2018 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 SUPERFAMILY SSF158472 163 216 4.58E-7 T 12-10-2018 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 SUPERFAMILY SSF47384 202 283 2.94E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 3.7E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 3.7E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 396 3.7E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 425 4.0E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 Gene3D G3DSA:3.30.565.10 292 442 2.7E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 Pfam PF00672 HAMP domain 163 215 4.8E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 SMART SM00387 331 442 3.3E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 Gene3D G3DSA:1.10.8.500 162 212 5.8E-8 T 12-10-2018 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 SUPERFAMILY SSF55874 274 441 3.8E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 283 4.3E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_16965 a200ee534f5d1b271eb9b0d8bfb57c91 445 SMART SM00388 219 284 2.9E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_02050 3dc0e2e067e20c0ca959b491049f327b 95 SUPERFAMILY SSF141000 3 93 1.44E-29 T 12-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 R615_02050 3dc0e2e067e20c0ca959b491049f327b 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.934 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 R615_02050 3dc0e2e067e20c0ca959b491049f327b 95 Gene3D G3DSA:1.10.20.60 1 93 3.6E-25 T 12-10-2018 R615_02050 3dc0e2e067e20c0ca959b491049f327b 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 1.0E-28 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 R615_02050 3dc0e2e067e20c0ca959b491049f327b 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 4.2E-19 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 R615_07380 193e76997a124b1efca47eb21a587b68 144 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 5 142 1.5E-41 T 12-10-2018 IPR011747 Conserved hypothetical protein CHP02241 R615_07380 193e76997a124b1efca47eb21a587b68 144 Pfam PF06841 T4-like virus tail tube protein gp19 9 140 1.6E-46 T 12-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 9 69 16.002 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 4.0E-10 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 Pfam PF02609 Exonuclease VII small subunit 10 60 3.3E-21 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 1.4E-22 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 PIRSF PIRSF006488 1 79 1.4E-23 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 SUPERFAMILY SSF116842 5 73 1.83E-21 T 12-10-2018 R615_15145 823c16a0ad88513d25a543b37d6ef68c 81 Gene3D G3DSA:1.10.287.1040 4 78 6.8E-25 T 12-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 R615_11230 2550c9c589c147754843430e550b84fe 118 Pfam PF00462 Glutaredoxin 45 103 3.5E-11 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 R615_11230 2550c9c589c147754843430e550b84fe 118 Gene3D G3DSA:3.40.30.10 44 118 8.2E-18 T 12-10-2018 R615_11230 2550c9c589c147754843430e550b84fe 118 SUPERFAMILY SSF52833 44 115 1.73E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_04415 06e4c3efb4daa4d771d669a360af03fb 493 PIRSF PIRSF034888 1 490 1.9E-41 T 12-10-2018 IPR014592 Predicted P-loop ATP-binding protein, VCA0200 R615_04415 06e4c3efb4daa4d771d669a360af03fb 493 Pfam PF13175 AAA ATPase domain 1 431 2.3E-31 T 12-10-2018 R615_04415 06e4c3efb4daa4d771d669a360af03fb 493 SUPERFAMILY SSF52540 1 445 3.46E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04415 06e4c3efb4daa4d771d669a360af03fb 493 Pfam PF12476 Protein of unknown function (DUF3696) 444 486 7.0E-5 T 12-10-2018 IPR022532 Domain of unknown function DUF3696, C-terminal R615_08860 808897890f1527e632eb01b662c18354 549 SUPERFAMILY SSF53738 307 445 2.98E-29 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 SUPERFAMILY SSF53738 210 316 7.65E-9 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 SUPERFAMILY SSF53738 25 236 1.81E-48 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 Gene3D G3DSA:3.40.120.10 222 319 6.8E-44 T 12-10-2018 R615_08860 808897890f1527e632eb01b662c18354 549 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 181 9.2E-36 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 SUPERFAMILY SSF55957 435 546 1.46E-20 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 211 316 2.8E-14 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 323 439 2.0E-28 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 545 3.7E-276 T 12-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 R615_08860 808897890f1527e632eb01b662c18354 549 Gene3D G3DSA:3.40.120.10 17 221 1.9E-70 T 12-10-2018 R615_08860 808897890f1527e632eb01b662c18354 549 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 141 150 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 Gene3D G3DSA:3.40.120.10 320 444 1.5E-34 T 12-10-2018 R615_08860 808897890f1527e632eb01b662c18354 549 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 478 537 6.7E-8 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_08860 808897890f1527e632eb01b662c18354 549 Gene3D G3DSA:3.30.310.50 445 547 4.3E-35 T 12-10-2018 R615_10965 0c7c54af67730b6c2e694cbef4dba53a 121 PRINTS PR01853 Bacterial YajC preprotein translocase signature 31 51 9.8E-13 T 12-10-2018 IPR003849 Preprotein translocase YajC R615_10965 0c7c54af67730b6c2e694cbef4dba53a 121 PRINTS PR01853 Bacterial YajC preprotein translocase signature 69 87 9.8E-13 T 12-10-2018 IPR003849 Preprotein translocase YajC R615_10965 0c7c54af67730b6c2e694cbef4dba53a 121 Pfam PF02699 Preprotein translocase subunit 34 108 2.6E-26 T 12-10-2018 IPR003849 Preprotein translocase YajC R615_10965 0c7c54af67730b6c2e694cbef4dba53a 121 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 32 111 5.0E-26 T 12-10-2018 IPR003849 Preprotein translocase YajC R615_10965 0c7c54af67730b6c2e694cbef4dba53a 121 SMART SM01323 29 111 5.4E-38 T 12-10-2018 IPR003849 Preprotein translocase YajC R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 Gene3D G3DSA:2.40.50.100 60 192 8.9E-76 T 12-10-2018 R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 358 3.7E-69 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 Gene3D G3DSA:2.40.420.20 43 355 8.9E-76 T 12-10-2018 R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 Gene3D G3DSA:1.10.287.470 94 153 8.9E-76 T 12-10-2018 R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 SUPERFAMILY SSF111369 51 271 3.92E-33 T 12-10-2018 R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 265 6.2E-9 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_11390 1ba52f6429e0f3e7dde5476335972a83 364 Gene3D G3DSA:2.40.30.170 46 273 8.9E-76 T 12-10-2018 R615_02745 e4ffcf654a75dd7a81f3353081698fd6 142 Pfam PF00581 Rhodanese-like domain 46 134 2.0E-14 T 12-10-2018 IPR001763 Rhodanese-like domain R615_02745 e4ffcf654a75dd7a81f3353081698fd6 142 SUPERFAMILY SSF52821 25 141 6.55E-31 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_02745 e4ffcf654a75dd7a81f3353081698fd6 142 SMART SM00450 42 138 4.4E-21 T 12-10-2018 IPR001763 Rhodanese-like domain R615_02745 e4ffcf654a75dd7a81f3353081698fd6 142 Gene3D G3DSA:3.40.250.10 42 142 2.5E-28 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 Pfam PF01979 Amidohydrolase family 12 310 3.6E-12 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 ProSitePatterns PS00483 Dihydroorotase signature 2. 246 257 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 ProSitePatterns PS00482 Dihydroorotase signature 1. 12 20 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 Hamap MF_00219 Dihydroorotase [pyrC]. 3 344 44.151 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 SUPERFAMILY SSF51556 3 343 1.13E-140 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 PIRSF PIRSF001237 1 344 2.8E-136 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 Gene3D G3DSA:3.20.20.140 4 344 2.3E-103 T 12-10-2018 R615_05715 6dd71185ccf908880da54b93b63d2f9f 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 5 343 6.9E-136 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_06965 e2e49037ee21c42edaf4a180c542d3af 148 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 140 27.862 T 12-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 R615_06965 e2e49037ee21c42edaf4a180c542d3af 148 Gene3D G3DSA:3.30.420.270 61 133 1.5E-14 T 12-10-2018 R615_06965 e2e49037ee21c42edaf4a180c542d3af 148 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 140 4.2E-28 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_06965 e2e49037ee21c42edaf4a180c542d3af 148 TIGRFAM TIGR02801 tolR: protein TolR 13 140 1.3E-42 T 12-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 R615_10450 d3338086f3f889872f39e75e7b563a06 364 SUPERFAMILY SSF52540 91 325 9.63E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10450 d3338086f3f889872f39e75e7b563a06 364 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 343 36.927 T 12-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein R615_10450 d3338086f3f889872f39e75e7b563a06 364 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 342 6.2E-99 T 12-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 R615_10450 d3338086f3f889872f39e75e7b563a06 364 Pfam PF01883 Iron-sulfur cluster assembly protein 8 79 2.0E-15 T 12-10-2018 IPR002744 MIP18 family-like R615_10450 d3338086f3f889872f39e75e7b563a06 364 Gene3D G3DSA:3.40.50.300 84 342 1.0E-82 T 12-10-2018 R615_10450 d3338086f3f889872f39e75e7b563a06 364 SUPERFAMILY SSF117916 8 90 6.21E-15 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily R615_10450 d3338086f3f889872f39e75e7b563a06 364 ProSitePatterns PS01215 Mrp family signature. 206 222 - T 12-10-2018 IPR000808 Mrp, conserved site GO:0005524 R615_15155 08460bed82ba3f4c92aecbdd80f54993 328 SUPERFAMILY SSF103088 159 288 1.31E-25 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_15155 08460bed82ba3f4c92aecbdd80f54993 328 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 7 59 7.8E-18 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain R615_15155 08460bed82ba3f4c92aecbdd80f54993 328 Pfam PF00691 OmpA family 183 282 1.5E-11 T 12-10-2018 IPR006665 OmpA-like domain R615_15155 08460bed82ba3f4c92aecbdd80f54993 328 Gene3D G3DSA:3.30.1330.60 142 290 1.2E-42 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 SUPERFAMILY SSF52402 2 186 1.09E-55 T 12-10-2018 R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 SMART SM00893 3 182 3.8E-53 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 Gene3D G3DSA:3.40.50.620 2 183 1.7E-54 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 Pfam PF01012 Electron transfer flavoprotein domain 4 169 1.1E-37 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 8.6E-36 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 PIRSF PIRSF000089 1 309 3.2E-102 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 SUPERFAMILY SSF52467 187 309 1.1E-47 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily R615_08795 bb329a668eb7cf414aafacd06e5cb71f 309 Gene3D G3DSA:3.40.50.1220 184 309 5.4E-57 T 12-10-2018 R615_12050 a5a173da09f9ce728a836b62c9e814d8 151 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 139 32.857 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 R615_12050 a5a173da09f9ce728a836b62c9e814d8 151 SUPERFAMILY SSF82093 30 135 6.54E-38 T 12-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 R615_12050 a5a173da09f9ce728a836b62c9e814d8 151 Gene3D G3DSA:2.40.50.140 30 135 2.1E-37 T 12-10-2018 R615_12050 a5a173da09f9ce728a836b62c9e814d8 151 Pfam PF03100 CcmE 5 129 7.1E-44 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 Gene3D G3DSA:3.30.70.360 182 297 1.0E-83 T 12-10-2018 R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 SUPERFAMILY SSF55031 182 297 4.49E-21 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 Gene3D G3DSA:3.40.630.10 32 368 1.0E-83 T 12-10-2018 R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 111 148 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 Pfam PF07687 Peptidase dimerisation domain 179 289 2.7E-20 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 Pfam PF01546 Peptidase family M20/M25/M40 78 380 9.5E-34 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 12 379 3.4E-118 T 12-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 R615_16775 db20b8ca07ab10e65bcca2dab365d504 388 SUPERFAMILY SSF53187 4 383 6.57E-57 T 12-10-2018 R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 Pfam PF07695 7TM diverse intracellular signalling 182 385 3.2E-23 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 Pfam PF00990 Diguanylate cyclase, GGDEF domain 456 613 2.4E-42 T 12-10-2018 IPR000160 GGDEF domain R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 Gene3D G3DSA:3.30.70.270 440 616 7.6E-52 T 12-10-2018 R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 Pfam PF07696 7TMR-DISM extracellular 2 52 168 4.8E-20 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 SMART SM00267 443 617 2.0E-52 T 12-10-2018 IPR000160 GGDEF domain R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 451 617 5.6E-47 T 12-10-2018 IPR000160 GGDEF domain R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 Gene3D G3DSA:2.60.40.2380 44 175 4.0E-11 T 12-10-2018 R615_03850 6e195c50ea1404d93cf2d61e322949bb 630 SUPERFAMILY SSF55073 459 618 5.81E-44 T 12-10-2018 IPR029787 Nucleotide cyclase R615_07590 9de63d44a478a197a6c272f33986001d 189 SMART SM00867 19 187 6.8E-15 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like R615_07590 9de63d44a478a197a6c272f33986001d 189 SUPERFAMILY SSF101874 18 188 2.09E-21 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily R615_07590 9de63d44a478a197a6c272f33986001d 189 PIRSF PIRSF029811 1 189 4.5E-62 T 12-10-2018 IPR027016 Uncharacterised protein with YceI domain R615_07590 9de63d44a478a197a6c272f33986001d 189 Pfam PF04264 YceI-like domain 26 186 7.5E-13 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like R615_07590 9de63d44a478a197a6c272f33986001d 189 Gene3D G3DSA:2.40.128.110 15 188 9.7E-50 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily R615_12115 3aa58236ab7910acd9359fed0ad13261 251 Gene3D G3DSA:3.40.630.30 16 179 1.0E-23 T 12-10-2018 R615_12115 3aa58236ab7910acd9359fed0ad13261 251 Pfam PF13444 Acetyltransferase (GNAT) domain 34 135 1.8E-27 T 12-10-2018 R615_12115 3aa58236ab7910acd9359fed0ad13261 251 SUPERFAMILY SSF55729 18 224 3.87E-37 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Gene3D G3DSA:1.25.40.20 215 305 3.7E-14 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SUPERFAMILY SSF48403 31 424 7.83E-64 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Pfam PF00023 Ankyrin repeat 59 90 0.0029 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Gene3D G3DSA:1.25.40.20 17 163 5.8E-37 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Gene3D G3DSA:1.25.40.20 308 442 4.7E-19 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 159 188 1.5E-4 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 126 155 44.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 93 122 2.7E-4 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 26 55 860.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 225 254 100.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 376 409 6.5 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 59 88 3.3E-5 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 310 339 2.2 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 258 287 0.017 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 SMART SM00248 192 221 33.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Pfam PF12796 Ankyrin repeats (3 copies) 98 188 5.8E-14 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Pfam PF12796 Ankyrin repeats (3 copies) 317 410 1.7E-6 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Pfam PF12796 Ankyrin repeats (3 copies) 197 287 1.9E-8 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain R615_09260 72824764872ee46c3b2ae93e13ecf213 444 Gene3D G3DSA:1.25.40.960 164 214 3.2E-13 T 12-10-2018 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 PRINTS PR01415 Ankyrin repeat signature 160 175 4.5E-5 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_09260 72824764872ee46c3b2ae93e13ecf213 444 PRINTS PR01415 Ankyrin repeat signature 274 288 4.5E-5 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 R615_04135 eb310cb98be59145f7ec8a1934443370 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 R615_04135 eb310cb98be59145f7ec8a1934443370 224 SUPERFAMILY SSF51366 4 218 2.17E-75 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_04135 eb310cb98be59145f7ec8a1934443370 224 PIRSF PIRSF001461 1 224 1.6E-104 T 12-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 R615_04135 eb310cb98be59145f7ec8a1934443370 224 Gene3D G3DSA:3.20.20.70 4 222 1.5E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04135 eb310cb98be59145f7ec8a1934443370 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 R615_04135 eb310cb98be59145f7ec8a1934443370 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 5.4E-91 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 R615_04135 eb310cb98be59145f7ec8a1934443370 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 3.0E-97 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 R615_11050 ec0a824ccc28015a713a50231be1d728 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 6.6E-162 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_11050 ec0a824ccc28015a713a50231be1d728 302 PIRSF PIRSF002936 1 302 1.2E-158 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_11050 ec0a824ccc28015a713a50231be1d728 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 7.4E-65 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 R615_11050 ec0a824ccc28015a713a50231be1d728 302 SUPERFAMILY SSF52402 3 210 9.86E-77 T 12-10-2018 R615_11050 ec0a824ccc28015a713a50231be1d728 302 Gene3D G3DSA:3.40.50.620 7 211 4.0E-66 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_11050 ec0a824ccc28015a713a50231be1d728 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.543 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_14610 893ae0df193d8ab0341059f184916aab 250 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 19 197 8.0E-43 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal R615_14610 893ae0df193d8ab0341059f184916aab 250 Gene3D G3DSA:3.40.225.10 2 250 1.0E-70 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily R615_14610 893ae0df193d8ab0341059f184916aab 250 SMART SM01007 17 197 9.5E-59 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal R615_14610 893ae0df193d8ab0341059f184916aab 250 SUPERFAMILY SSF53639 12 215 3.73E-57 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily R615_15955 8773f575a8034a3292aad441795ac755 295 Gene3D G3DSA:3.40.190.290 94 292 4.5E-35 T 12-10-2018 R615_15955 8773f575a8034a3292aad441795ac755 295 SUPERFAMILY SSF46785 6 110 1.08E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_15955 8773f575a8034a3292aad441795ac755 295 Gene3D G3DSA:1.10.10.10 6 91 4.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15955 8773f575a8034a3292aad441795ac755 295 SUPERFAMILY SSF53850 92 293 4.07E-34 T 12-10-2018 R615_15955 8773f575a8034a3292aad441795ac755 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.0E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_15955 8773f575a8034a3292aad441795ac755 295 Pfam PF03466 LysR substrate binding domain 92 292 2.2E-30 T 12-10-2018 IPR005119 LysR, substrate-binding R615_02375 54aae6d2c900b39768a87a796a6def2b 402 SUPERFAMILY SSF56784 189 394 2.31E-54 T 12-10-2018 IPR036412 HAD-like superfamily R615_02375 54aae6d2c900b39768a87a796a6def2b 402 Gene3D G3DSA:3.40.50.1000 105 395 6.8E-88 T 12-10-2018 IPR023214 HAD superfamily R615_02375 54aae6d2c900b39768a87a796a6def2b 402 Pfam PF13740 ACT domain 3 78 7.1E-26 T 12-10-2018 R615_02375 54aae6d2c900b39768a87a796a6def2b 402 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 176 394 4.4E-82 T 12-10-2018 R615_02375 54aae6d2c900b39768a87a796a6def2b 402 Pfam PF12710 haloacid dehalogenase-like hydrolase 192 359 4.4E-23 T 12-10-2018 R615_02375 54aae6d2c900b39768a87a796a6def2b 402 Gene3D G3DSA:3.30.70.260 3 82 2.0E-12 T 12-10-2018 R615_02375 54aae6d2c900b39768a87a796a6def2b 402 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 191 361 2.2E-35 T 12-10-2018 R615_02375 54aae6d2c900b39768a87a796a6def2b 402 SUPERFAMILY SSF55021 112 184 2.9E-6 T 12-10-2018 R615_02375 54aae6d2c900b39768a87a796a6def2b 402 SUPERFAMILY SSF55021 4 80 2.0E-11 T 12-10-2018 R615_08365 c21874012708cce3f611d89d36c57c24 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 Gene3D G3DSA:4.10.520.10 1 90 7.4E-36 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.1E-33 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.9E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.9E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.9E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 SMART SM00411 1 90 1.4E-42 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_08365 c21874012708cce3f611d89d36c57c24 90 SUPERFAMILY SSF47729 1 90 4.86E-32 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_06050 695d389d90f940516906fb68ae0b8e26 405 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 1 295 20.469 T 12-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial R615_06050 695d389d90f940516906fb68ae0b8e26 405 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 270 2.1E-60 T 12-10-2018 IPR017039 Virulence factor BrkB R615_06050 695d389d90f940516906fb68ae0b8e26 405 Pfam PF03631 Virulence factor BrkB 32 272 1.4E-52 T 12-10-2018 IPR017039 Virulence factor BrkB R615_09845 fccc76e72959418970ce4a3a33d85dee 349 Pfam PF12833 Helix-turn-helix domain 257 334 1.3E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_09845 fccc76e72959418970ce4a3a33d85dee 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 302 317 5.9E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_09845 fccc76e72959418970ce4a3a33d85dee 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 317 333 5.9E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_09845 fccc76e72959418970ce4a3a33d85dee 349 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 64 206 1.6E-14 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_09845 fccc76e72959418970ce4a3a33d85dee 349 Gene3D G3DSA:1.10.10.60 231 340 1.5E-23 T 12-10-2018 R615_09845 fccc76e72959418970ce4a3a33d85dee 349 SUPERFAMILY SSF46689 287 334 2.26E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_09845 fccc76e72959418970ce4a3a33d85dee 349 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 287 329 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_09845 fccc76e72959418970ce4a3a33d85dee 349 SMART SM00342 251 333 5.8E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_05000 7d3bf971582a08f718c7c4894babaa07 467 Pfam PF13727 CoA-binding domain 62 241 1.4E-37 T 12-10-2018 R615_05000 7d3bf971582a08f718c7c4894babaa07 467 Gene3D G3DSA:3.40.50.720 140 266 2.9E-13 T 12-10-2018 R615_05000 7d3bf971582a08f718c7c4894babaa07 467 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 21 464 4.1E-146 T 12-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase R615_05000 7d3bf971582a08f718c7c4894babaa07 467 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 25 464 1.2E-164 T 12-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 R615_05000 7d3bf971582a08f718c7c4894babaa07 467 SUPERFAMILY SSF51735 143 272 1.12E-6 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_05000 7d3bf971582a08f718c7c4894babaa07 467 Pfam PF02397 Bacterial sugar transferase 277 459 2.8E-64 T 12-10-2018 IPR003362 Bacterial sugar transferase R615_14070 8443a3d7aa85497481440ce705228a44 221 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 11 205 4.0E-56 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like R615_14070 8443a3d7aa85497481440ce705228a44 221 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 10 207 33.501 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like R615_14070 8443a3d7aa85497481440ce705228a44 221 Gene3D G3DSA:3.40.50.1950 7 213 3.2E-76 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 R615_14070 8443a3d7aa85497481440ce705228a44 221 SUPERFAMILY SSF52507 11 207 1.96E-55 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 R615_14070 8443a3d7aa85497481440ce705228a44 221 Pfam PF02441 Flavoprotein 11 186 2.3E-22 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 R615_05120 5e9a9a89f417add257e1c078fdbc7863 153 Pfam PF02050 Flagellar FliJ protein 24 145 5.5E-21 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 R615_05120 5e9a9a89f417add257e1c078fdbc7863 153 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 9 146 2.7E-18 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 R615_08320 e90b60f712a216b214a90ce89957b66b 285 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 5.3E-39 T 12-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.4E-84 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 SUPERFAMILY SSF53223 1 122 3.36E-39 T 12-10-2018 R615_08320 e90b60f712a216b214a90ce89957b66b 285 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.973 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_08320 e90b60f712a216b214a90ce89957b66b 285 Gene3D G3DSA:3.40.50.720 6 259 7.2E-107 T 12-10-2018 R615_08320 e90b60f712a216b214a90ce89957b66b 285 Gene3D G3DSA:3.40.50.10860 8 276 7.2E-107 T 12-10-2018 R615_08320 e90b60f712a216b214a90ce89957b66b 285 SUPERFAMILY SSF51735 123 279 6.79E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08320 e90b60f712a216b214a90ce89957b66b 285 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 280 1.6E-67 T 12-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 R615_17015 0d1ae679f55cc90132aad321172284a3 285 Gene3D G3DSA:3.55.30.10 5 173 2.9E-53 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 R615_17015 0d1ae679f55cc90132aad321172284a3 285 Gene3D G3DSA:3.90.1280.10 224 281 2.9E-19 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 R615_17015 0d1ae679f55cc90132aad321172284a3 285 Pfam PF01430 Hsp33 protein 9 270 1.4E-78 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 R615_17015 0d1ae679f55cc90132aad321172284a3 285 PIRSF PIRSF005261 1 283 4.6E-74 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 R615_17015 0d1ae679f55cc90132aad321172284a3 285 SUPERFAMILY SSF64397 9 232 7.98E-65 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 R615_17015 0d1ae679f55cc90132aad321172284a3 285 Hamap MF_00117 33 kDa chaperonin [hslO]. 8 282 28.38 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 R615_17015 0d1ae679f55cc90132aad321172284a3 285 Gene3D G3DSA:1.10.287.480 175 223 1.1E-19 T 12-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily R615_17015 0d1ae679f55cc90132aad321172284a3 285 SUPERFAMILY SSF118352 224 280 7.32E-17 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 SUPERFAMILY SSF53697 7 550 8.45E-214 T 12-10-2018 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 Gene3D G3DSA:1.10.1390.10 508 549 8.1E-18 T 12-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 Gene3D G3DSA:3.40.50.10490 13 507 5.4E-223 T 12-10-2018 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 498 515 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 PRINTS PR00662 Glucose-6-phosphate isomerase signature 262 280 1.3E-52 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 PRINTS PR00662 Glucose-6-phosphate isomerase signature 339 360 1.3E-52 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 PRINTS PR00662 Glucose-6-phosphate isomerase signature 498 511 1.3E-52 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 1.3E-52 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 PRINTS PR00662 Glucose-6-phosphate isomerase signature 466 484 1.3E-52 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 PRINTS PR00662 Glucose-6-phosphate isomerase signature 484 498 1.3E-52 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 525 40.689 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 266 279 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 Gene3D G3DSA:3.40.50.10490 98 292 5.4E-223 T 12-10-2018 R615_02595 c211ecec7529ff1bc3afcd6f5a4279d0 552 Pfam PF00342 Phosphoglucose isomerase 52 542 5.9E-202 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_04235 5b51510f4c597b7b7ab62b90cfccf409 410 Pfam PF03069 Acetamidase/Formamidase family 7 384 2.1E-175 T 12-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 R615_04235 5b51510f4c597b7b7ab62b90cfccf409 410 SUPERFAMILY SSF141130 15 382 4.45E-79 T 12-10-2018 R615_04235 5b51510f4c597b7b7ab62b90cfccf409 410 Gene3D G3DSA:2.60.120.580 192 281 7.5E-21 T 12-10-2018 R615_04235 5b51510f4c597b7b7ab62b90cfccf409 410 Gene3D G3DSA:2.60.120.580 2 141 1.1E-18 T 12-10-2018 R615_14390 93b0f4a378526c5d84a2cd1fc93472e9 228 SUPERFAMILY SSF53448 1 222 4.51E-55 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_14390 93b0f4a378526c5d84a2cd1fc93472e9 228 Pfam PF00483 Nucleotidyl transferase 2 147 1.1E-21 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 R615_14390 93b0f4a378526c5d84a2cd1fc93472e9 228 Gene3D G3DSA:3.90.550.10 1 226 5.4E-55 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_05690 6f0bc810e33ad968f012a6ba4cc3b877 301 Pfam PF01263 Aldose 1-epimerase 25 298 1.0E-41 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 R615_05690 6f0bc810e33ad968f012a6ba4cc3b877 301 Gene3D G3DSA:2.70.98.10 22 300 4.4E-72 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 R615_05690 6f0bc810e33ad968f012a6ba4cc3b877 301 PIRSF PIRSF016020 2 301 2.4E-53 T 12-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 R615_05690 6f0bc810e33ad968f012a6ba4cc3b877 301 SUPERFAMILY SSF74650 12 298 3.64E-60 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 R615_05530 ee9a043127851f1f22a57798f4daa705 212 Hamap MF_00052_B Ribonuclease HII [rnhB]. 26 205 35.804 T 12-10-2018 IPR022898 Ribonuclease HII GO:0004523 R615_05530 ee9a043127851f1f22a57798f4daa705 212 Pfam PF01351 Ribonuclease HII 28 204 6.4E-37 T 12-10-2018 IPR024567 Ribonuclease HII/HIII domain R615_05530 ee9a043127851f1f22a57798f4daa705 212 Gene3D G3DSA:3.30.420.10 4 212 1.1E-73 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_05530 ee9a043127851f1f22a57798f4daa705 212 SUPERFAMILY SSF53098 22 210 8.5E-67 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 SUPERFAMILY SSF50475 21 340 1.26E-130 T 12-10-2018 R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 28 449 1.6E-177 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 19 505 72.407 T 12-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 SUPERFAMILY SSF143968 341 505 1.05E-68 T 12-10-2018 R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 24 473 2.1E-178 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 Gene3D G3DSA:3.40.1670.10 355 472 1.5E-52 T 12-10-2018 R615_17160 fec1801270cd44fa3e90fbffe66e0689 507 Gene3D G3DSA:1.20.5.570 473 507 3.0E-14 T 12-10-2018 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 SUPERFAMILY SSF52540 136 377 4.21E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Gene3D G3DSA:1.10.10.60 384 453 1.1E-16 T 12-10-2018 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Pfam PF02954 Bacterial regulatory protein, Fis family 410 450 8.7E-14 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 SMART SM00448 5 116 4.4E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 SUPERFAMILY SSF52172 6 179 5.98E-40 T 12-10-2018 IPR011006 CheY-like superfamily R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Gene3D G3DSA:3.40.50.300 128 307 8.4E-59 T 12-10-2018 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 349 358 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Gene3D G3DSA:1.10.8.60 308 383 5.1E-23 T 12-10-2018 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 160 173 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Pfam PF00158 Sigma-54 interaction domain 137 302 2.1E-67 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Gene3D G3DSA:3.40.50.2300 6 123 2.3E-33 T 12-10-2018 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 222 237 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 Pfam PF00072 Response regulator receiver domain 8 116 4.3E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 416 433 7.5E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 453 7.5E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 SMART SM00382 156 299 6.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_03350 7d0bcb9b59d87d0e782e83827098f547 453 SUPERFAMILY SSF46689 350 453 3.67E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_08275 aa540a141295448c2774f508d3c24149 456 Gene3D G3DSA:1.20.120.640 307 455 2.9E-45 T 12-10-2018 R615_08275 aa540a141295448c2774f508d3c24149 456 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 455 4.7E-173 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 Pfam PF09190 DALR domain 342 400 8.0E-21 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 Gene3D G3DSA:3.40.50.620 1 306 1.1E-131 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08275 aa540a141295448c2774f508d3c24149 456 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 314 3.2E-127 T 12-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 8.9E-30 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 223 244 8.9E-30 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 8.9E-30 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 192 210 8.9E-30 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 SMART SM00840 342 400 4.7E-28 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 456 38.729 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 R615_08275 aa540a141295448c2774f508d3c24149 456 SUPERFAMILY SSF52374 3 313 3.84E-94 T 12-10-2018 R615_08275 aa540a141295448c2774f508d3c24149 456 SUPERFAMILY SSF47323 317 455 7.32E-39 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 1.2E-29 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.2E-29 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 1.2E-29 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.2E-29 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 1.2E-29 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 Gene3D G3DSA:3.30.390.30 346 463 5.0E-31 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PIRSF PIRSF000350 1 460 9.1E-70 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 325 8.5E-61 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 344 455 7.6E-27 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 SUPERFAMILY SSF55424 342 460 1.01E-28 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 SUPERFAMILY SSF51905 1 322 1.02E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 Gene3D G3DSA:3.50.50.60 157 275 2.6E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 Gene3D G3DSA:3.50.50.60 6 330 2.6E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 340 361 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.9E-54 T 12-10-2018 R615_08575 a7ab2eb81cd88917ad7f7a7872b033fd 463 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 1 463 63.712 T 12-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 R615_03990 02d54245ef57347385c28e3a055042a6 172 SUPERFAMILY SSF54637 7 148 1.21E-43 T 12-10-2018 IPR029069 HotDog domain superfamily R615_03990 02d54245ef57347385c28e3a055042a6 172 Gene3D G3DSA:3.10.129.10 3 153 2.9E-53 T 12-10-2018 R615_03990 02d54245ef57347385c28e3a055042a6 172 Pfam PF03061 Thioesterase superfamily 22 95 3.5E-14 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 Gene3D G3DSA:1.10.3810.10 210 414 5.6E-248 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 PIRSF PIRSF002799 32 821 1.8E-274 T 12-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 Pfam PF14814 Bifunctional transglycosylase second domain 124 206 9.3E-22 T 12-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 Pfam PF00912 Transglycosylase 218 389 5.2E-59 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 Gene3D G3DSA:3.40.710.10 114 762 5.6E-248 T 12-10-2018 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 Pfam PF00905 Penicillin binding protein transpeptidase domain 485 710 1.2E-19 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 SUPERFAMILY SSF56601 371 785 2.53E-109 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like R615_01415 5429ab318e1257bfc814c2eff266afd0 821 SUPERFAMILY SSF53955 210 409 3.37E-65 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_01415 5429ab318e1257bfc814c2eff266afd0 821 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 85 777 8.7E-242 T 12-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_01415 5429ab318e1257bfc814c2eff266afd0 821 Gene3D G3DSA:3.30.2060.10 122 209 5.6E-248 T 12-10-2018 R615_01705 083edfb2f5a81268ef4c97342b6cea63 225 PIRSF PIRSF029287 1 225 1.6E-47 T 12-10-2018 IPR017748 T6S-associated protein TagF R615_01705 083edfb2f5a81268ef4c97342b6cea63 225 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 6 138 7.4E-42 T 12-10-2018 IPR017748 T6S-associated protein TagF R615_01705 083edfb2f5a81268ef4c97342b6cea63 225 Gene3D G3DSA:3.40.1730.10 2 225 2.3E-69 T 12-10-2018 IPR038225 T6S-associated protein TagF superfamily R615_01705 083edfb2f5a81268ef4c97342b6cea63 225 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 6 137 1.4E-45 T 12-10-2018 IPR017748 T6S-associated protein TagF R615_09265 8029ea272dece5961fcf96e3f90bd8e9 159 SUPERFAMILY SSF47175 33 157 1.62E-26 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 R615_09265 8029ea272dece5961fcf96e3f90bd8e9 159 Gene3D G3DSA:1.20.120.10 31 158 2.2E-29 T 12-10-2018 R615_09265 8029ea272dece5961fcf96e3f90bd8e9 159 Pfam PF01322 Cytochrome C' 36 157 2.1E-26 T 12-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 R615_09265 8029ea272dece5961fcf96e3f90bd8e9 159 PIRSF PIRSF000027 11 159 5.8E-23 T 12-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 R615_17405 31d2ce5ee16c7910064b8d6a08df5272 804 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 17 779 2.7E-230 T 12-10-2018 IPR018752 Uncharacterised protein family UPF0753 R615_17405 31d2ce5ee16c7910064b8d6a08df5272 804 Hamap MF_01871 UPF0753 protein . 12 794 21.6 T 12-10-2018 IPR018752 Uncharacterised protein family UPF0753 R615_12665 d21e8936e5777b7cab5201fe144c5319 265 Pfam PF00588 SpoU rRNA Methylase family 5 154 8.0E-35 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 R615_12665 d21e8936e5777b7cab5201fe144c5319 265 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 8.8E-76 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 R615_12665 d21e8936e5777b7cab5201fe144c5319 265 Gene3D G3DSA:3.40.1280.10 1 164 6.7E-66 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_12665 d21e8936e5777b7cab5201fe144c5319 265 SUPERFAMILY SSF75217 4 159 3.47E-36 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_12665 d21e8936e5777b7cab5201fe144c5319 265 Gene3D G3DSA:1.10.8.590 176 238 2.2E-24 T 12-10-2018 R615_12665 d21e8936e5777b7cab5201fe144c5319 265 PIRSF PIRSF004808 1 245 4.4E-73 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 R615_13590 498126a579a8b4d7d08204116acb6f56 480 Pfam PF00128 Alpha amylase, catalytic domain 35 237 1.8E-11 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 R615_13590 498126a579a8b4d7d08204116acb6f56 480 Gene3D G3DSA:3.90.400.10 87 168 1.6E-113 T 12-10-2018 R615_13590 498126a579a8b4d7d08204116acb6f56 480 SMART SM00642 12 421 3.2E-4 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 R615_13590 498126a579a8b4d7d08204116acb6f56 480 Gene3D G3DSA:3.20.20.80 9 405 1.6E-113 T 12-10-2018 R615_13590 498126a579a8b4d7d08204116acb6f56 480 TIGRFAM TIGR03852 sucrose_gtfA: sucrose phosphorylase 5 465 8.5E-151 T 12-10-2018 IPR022527 Sucrose phosphorylase GO:0004645|GO:0044262 R615_13590 498126a579a8b4d7d08204116acb6f56 480 SUPERFAMILY SSF51445 5 424 9.24E-63 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_13960 aeae651a0f134c88d5282f1d05e48012 565 Gene3D G3DSA:3.30.450.90 154 289 2.2E-48 T 12-10-2018 R615_13960 aeae651a0f134c88d5282f1d05e48012 565 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 7 565 4.7E-261 T 12-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 R615_13960 aeae651a0f134c88d5282f1d05e48012 565 SUPERFAMILY SSF160246 3 140 1.07E-33 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily R615_13960 aeae651a0f134c88d5282f1d05e48012 565 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 11 143 7.1E-15 T 12-10-2018 IPR007831 General secretory system II, protein E, N-terminal R615_13960 aeae651a0f134c88d5282f1d05e48012 565 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 384 398 - T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_13960 aeae651a0f134c88d5282f1d05e48012 565 SUPERFAMILY SSF52540 178 563 4.04E-101 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13960 aeae651a0f134c88d5282f1d05e48012 565 Gene3D G3DSA:3.30.300.160 61 141 4.8E-7 T 12-10-2018 R615_13960 aeae651a0f134c88d5282f1d05e48012 565 Gene3D G3DSA:3.40.50.300 294 565 8.9E-106 T 12-10-2018 R615_13960 aeae651a0f134c88d5282f1d05e48012 565 Pfam PF00437 Type II/IV secretion system protein 189 456 2.0E-90 T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_04405 dd237c9583f8596e251b101ab795e146 486 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 7 475 45.224 T 12-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 R615_04405 dd237c9583f8596e251b101ab795e146 486 Pfam PF01464 Transglycosylase SLT domain 297 407 1.1E-21 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 R615_04405 dd237c9583f8596e251b101ab795e146 486 SUPERFAMILY SSF53955 249 455 4.03E-37 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_04405 dd237c9583f8596e251b101ab795e146 486 SUPERFAMILY SSF53850 48 269 1.81E-28 T 12-10-2018 R615_04405 dd237c9583f8596e251b101ab795e146 486 Gene3D G3DSA:1.10.530.10 287 465 6.8E-35 T 12-10-2018 R615_04405 dd237c9583f8596e251b101ab795e146 486 Gene3D G3DSA:3.40.190.10 42 266 1.0E-61 T 12-10-2018 R615_04405 dd237c9583f8596e251b101ab795e146 486 Gene3D G3DSA:3.40.190.10 131 227 1.0E-61 T 12-10-2018 R615_04405 dd237c9583f8596e251b101ab795e146 486 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 269 2.4E-21 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_04405 dd237c9583f8596e251b101ab795e146 486 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 314 342 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 R615_04405 dd237c9583f8596e251b101ab795e146 486 SMART SM00062 46 271 2.2E-15 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_13765 0eb38610e718ea58d0308857e142cc83 242 SUPERFAMILY SSF53850 52 230 1.93E-10 T 12-10-2018 R615_01750 f39a9803fa1b00ff32a428101561845c 538 Gene3D G3DSA:2.160.20.110 93 278 5.4E-29 T 12-10-2018 R615_01750 f39a9803fa1b00ff32a428101561845c 538 Pfam PF07581 The GLUG motif 198 223 9.3E-4 T 12-10-2018 IPR011493 GLUG R615_02045 dde16dcd728ec2232339459d395b0ae9 486 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 476 4.0E-183 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_02045 dde16dcd728ec2232339459d395b0ae9 486 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 476 90.832 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_02045 dde16dcd728ec2232339459d395b0ae9 486 SUPERFAMILY SSF75304 1 481 6.93E-165 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_02045 dde16dcd728ec2232339459d395b0ae9 486 Pfam PF01425 Amidase 24 465 3.0E-156 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_02045 dde16dcd728ec2232339459d395b0ae9 486 ProSitePatterns PS00571 Amidases signature. 151 182 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 R615_02045 dde16dcd728ec2232339459d395b0ae9 486 Gene3D G3DSA:3.90.1300.10 2 485 7.7E-201 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 Pfam PF04055 Radical SAM superfamily 17 177 4.8E-26 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 3 324 36.006 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 Gene3D G3DSA:3.20.20.70 1 324 2.6E-79 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 3 324 8.0E-103 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 SUPERFAMILY SSF102114 3 277 1.12E-69 T 12-10-2018 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 SMART SM00729 12 215 2.9E-7 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 Pfam PF06463 Molybdenum Cofactor Synthesis C 182 307 2.4E-34 T 12-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 18 29 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16455 69907fec9a8b11ce13bf64c818ea2d49 324 Pfam PF13353 4Fe-4S single cluster domain 20 121 8.4E-9 T 12-10-2018 R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 Pfam PF07715 TonB-dependent Receptor Plug Domain 86 186 1.4E-15 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 SUPERFAMILY SSF56935 41 741 2.93E-103 T 12-10-2018 R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 Gene3D G3DSA:2.40.170.20 198 741 4.3E-141 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 Gene3D G3DSA:2.170.130.10 67 195 1.6E-35 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 Pfam PF00593 TonB dependent receptor 280 740 5.1E-38 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 724 741 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site R615_10165 1d39e481c40775e8a667c1ee5a198f40 741 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 88 741 1.7E-92 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 R615_05430 76a02d7d0870b55906389b9ca340860a 152 SUPERFAMILY SSF46458 1 134 4.04E-38 T 12-10-2018 IPR009050 Globin-like superfamily R615_05430 76a02d7d0870b55906389b9ca340860a 152 Gene3D G3DSA:1.10.490.10 2 143 6.0E-40 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 R615_05430 76a02d7d0870b55906389b9ca340860a 152 Pfam PF00042 Globin 7 101 4.1E-12 T 12-10-2018 IPR000971 Globin GO:0020037 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 281 1.4E-48 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.9E-17 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 6.9E-17 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 6.9E-17 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 6.9E-17 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 6.9E-17 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 Gene3D G3DSA:3.30.390.120 317 380 3.4E-22 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 SUPERFAMILY SSF51905 1 324 4.94E-37 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 Gene3D G3DSA:3.50.50.60 9 281 2.4E-88 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 Gene3D G3DSA:3.50.50.60 111 245 2.4E-88 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 2.1E-11 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 173 2.1E-11 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 2.1E-11 T 12-10-2018 R615_00815 f9f6cf4a9fa69bb1547acb3dc65dc6fa 385 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-11 T 12-10-2018 R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 Pfam PF00563 EAL domain 623 854 1.0E-65 T 12-10-2018 IPR001633 EAL domain R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 SUPERFAMILY SSF141868 623 867 8.24E-80 T 12-10-2018 IPR035919 EAL domain superfamily R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 Pfam PF00990 Diguanylate cyclase, GGDEF domain 447 599 2.4E-40 T 12-10-2018 IPR000160 GGDEF domain R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 SUPERFAMILY SSF55073 452 601 9.42E-42 T 12-10-2018 IPR029787 Nucleotide cyclase R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 SMART SM00267 436 607 8.3E-53 T 12-10-2018 IPR000160 GGDEF domain R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 443 600 1.1E-36 T 12-10-2018 IPR000160 GGDEF domain R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 SMART SM00052 617 859 2.5E-99 T 12-10-2018 IPR001633 EAL domain R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 Gene3D G3DSA:3.20.20.450 618 877 2.1E-85 T 12-10-2018 IPR035919 EAL domain superfamily R615_13555 0db800be856b8dfb37bdfe5e94a70480 884 Gene3D G3DSA:3.30.70.270 440 612 1.9E-47 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:3.30.70.1320 135 328 3.0E-256 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 SUPERFAMILY SSF82693 46 128 2.88E-18 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 SUPERFAMILY SSF82866 294 497 3.79E-41 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 SUPERFAMILY SSF82714 185 268 1.83E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1036 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:3.30.70.1440 664 866 3.0E-256 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Pfam PF00873 AcrB/AcrD/AcrF family 6 1032 2.6E-230 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:1.20.1640.10 14 506 3.0E-256 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 SUPERFAMILY SSF82714 715 800 1.44E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:3.30.2090.10 182 274 3.0E-256 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 SUPERFAMILY SSF82866 797 1037 4.19E-42 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:3.30.70.1430 42 811 3.0E-256 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 2.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 SUPERFAMILY SSF82693 137 328 1.91E-20 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:1.20.1640.10 507 1030 3.0E-256 T 12-10-2018 R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:3.30.2090.10 715 803 3.0E-256 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_02930 d63d2752f220ef778eb89c301481cc1e 1038 Gene3D G3DSA:3.30.70.1430 561 663 3.0E-256 T 12-10-2018 R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 Gene3D G3DSA:2.40.240.20 1 70 1.3E-18 T 12-10-2018 R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 PIRSF PIRSF015601 3 240 6.3E-60 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 Gene3D G3DSA:3.40.1280.10 76 242 4.5E-61 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 5 240 1.3E-67 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 SUPERFAMILY SSF88697 4 67 1.42E-14 T 12-10-2018 IPR015947 PUA-like superfamily R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 Pfam PF04452 RNA methyltransferase 20 236 3.0E-72 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 R615_15165 d3f3e1fba009758358748c0031f4dc4b 242 SUPERFAMILY SSF75217 76 241 4.36E-54 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_04875 090aee6f8bdcd24fbbf8ac9da6850aef 161 Gene3D G3DSA:3.90.79.10 7 159 1.0E-36 T 12-10-2018 R615_04875 090aee6f8bdcd24fbbf8ac9da6850aef 161 SUPERFAMILY SSF55811 11 154 1.21E-25 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_04875 090aee6f8bdcd24fbbf8ac9da6850aef 161 Pfam PF00293 NUDIX domain 23 139 2.3E-14 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_04875 090aee6f8bdcd24fbbf8ac9da6850aef 161 PIRSF PIRSF037599 6 157 8.7E-64 T 12-10-2018 IPR033715 GDP-mannose mannosyl hydrolase GO:0008727 R615_04075 d0e8ee68eedf8ced33fcbe9d0e76747a 365 Gene3D G3DSA:3.60.130.10 8 343 6.4E-25 T 12-10-2018 R615_04075 d0e8ee68eedf8ced33fcbe9d0e76747a 365 SUPERFAMILY SSF51197 33 343 8.24E-22 T 12-10-2018 R615_04075 d0e8ee68eedf8ced33fcbe9d0e76747a 365 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 38 343 5.1E-13 T 12-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 R615_09080 ee7cf0a99285919acffe74c518c99b6b 412 SUPERFAMILY SSF52540 10 207 2.66E-20 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09080 ee7cf0a99285919acffe74c518c99b6b 412 Pfam PF13635 Domain of unknown function (DUF4143) 201 360 3.4E-29 T 12-10-2018 IPR025420 Domain of unknown function DUF4143 R615_09080 ee7cf0a99285919acffe74c518c99b6b 412 Gene3D G3DSA:3.40.50.300 1 74 4.4E-6 T 12-10-2018 R615_09080 ee7cf0a99285919acffe74c518c99b6b 412 Pfam PF13173 AAA domain 18 139 8.4E-24 T 12-10-2018 R615_12850 baf0fcbaa7a95945b8ec8553620f4665 160 Pfam PF14539 Domain of unknown function (DUF4442) 26 153 1.8E-34 T 12-10-2018 IPR027961 Protein of unknown function DUF4442 R615_12850 baf0fcbaa7a95945b8ec8553620f4665 160 SUPERFAMILY SSF54637 28 159 1.02E-21 T 12-10-2018 IPR029069 HotDog domain superfamily R615_12850 baf0fcbaa7a95945b8ec8553620f4665 160 Gene3D G3DSA:3.10.129.10 6 156 1.8E-42 T 12-10-2018 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00149 Fumarate lyase superfamily signature 313 329 4.6E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00149 Fumarate lyase superfamily signature 267 294 4.6E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00149 Fumarate lyase superfamily signature 130 148 4.6E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00149 Fumarate lyase superfamily signature 176 194 4.6E-31 T 12-10-2018 IPR000362 Fumarate lyase family R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 ProSitePatterns PS00163 Fumarate lyases signature. 313 322 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00145 Argininosuccinate lyase family signature 171 191 9.2E-8 T 12-10-2018 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00145 Argininosuccinate lyase family signature 129 151 9.2E-8 T 12-10-2018 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 PRINTS PR00145 Argininosuccinate lyase family signature 313 329 9.2E-8 T 12-10-2018 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 Gene3D G3DSA:1.20.200.10 135 403 7.7E-99 T 12-10-2018 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 SUPERFAMILY SSF48557 2 452 1.15E-135 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 Gene3D G3DSA:1.10.40.30 404 455 5.1E-17 T 12-10-2018 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 Gene3D G3DSA:1.10.275.10 6 134 4.1E-46 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 458 73.261 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 Pfam PF10415 Fumarase C C-terminus 404 457 4.7E-18 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_14830 99bdb7a4fa6a9c782952ef59e5112140 461 Pfam PF00206 Lyase 13 338 9.8E-94 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 Pfam PF03449 Transcription elongation factor, N-terminal 14 83 1.1E-21 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 13 165 1.8E-63 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 PIRSF PIRSF006092 8 166 5.1E-44 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 Hamap MF_00105 Transcription elongation factor GreA [greA]. 11 163 26.418 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 Hamap MF_00930 Transcription elongation factor GreB [greB]. 10 165 49.519 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 Gene3D G3DSA:3.10.50.30 87 167 4.0E-28 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 SUPERFAMILY SSF46557 14 85 3.14E-23 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 91 164 1.3E-22 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 SUPERFAMILY SSF54534 89 165 3.27E-20 T 12-10-2018 R615_07675 7fc8b313faacc74fc8c3ec524e73e2a1 183 Gene3D G3DSA:1.10.287.180 11 85 8.4E-26 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 Gene3D G3DSA:1.25.40.10 34 147 8.0E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 Pfam PF09295 ChAPs (Chs5p-Arf1p-binding proteins) 137 248 4.3E-5 T 12-10-2018 IPR015374 Chs5p-Arf1p binding R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SMART SM00028 83 116 1.1 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SMART SM00028 364 397 67.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SMART SM00028 329 362 14.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SMART SM00028 191 224 32.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SMART SM00028 156 189 40.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 Gene3D G3DSA:1.25.40.10 148 270 2.3E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 Pfam PF13181 Tetratricopeptide repeat 85 114 0.094 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SUPERFAMILY SSF48452 291 407 2.98E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 Gene3D G3DSA:1.25.40.10 277 418 4.5E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_15540 534c36f934e6fa0d949c5b00563f33c9 421 SUPERFAMILY SSF81901 64 263 3.66E-17 T 12-10-2018 R615_13595 60be5ce5bfea84746163115574ba506a 494 Gene3D G3DSA:3.50.50.60 8 262 6.3E-9 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13595 60be5ce5bfea84746163115574ba506a 494 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 2 491 51.115 T 12-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 R615_13595 60be5ce5bfea84746163115574ba506a 494 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 6 487 1.9E-207 T 12-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 R615_13595 60be5ce5bfea84746163115574ba506a 494 SUPERFAMILY SSF51905 1 273 9.32E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13595 60be5ce5bfea84746163115574ba506a 494 Gene3D G3DSA:3.30.9.10 111 272 6.3E-9 T 12-10-2018 R615_13595 60be5ce5bfea84746163115574ba506a 494 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 5 491 1.1E-235 T 12-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 R615_09390 952dfd6e3999e01188c21ec2f0b5c082 214 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 60 4.1E-5 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_09390 952dfd6e3999e01188c21ec2f0b5c082 214 Gene3D G3DSA:3.40.50.720 2 204 2.8E-45 T 12-10-2018 R615_09390 952dfd6e3999e01188c21ec2f0b5c082 214 SUPERFAMILY SSF51735 5 192 5.0E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08655 d9b94ec85c96143dbae2544fafcab32b 236 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 38 209 1.8E-60 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 R615_08655 d9b94ec85c96143dbae2544fafcab32b 236 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 40 219 4.9E-48 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 R615_08655 d9b94ec85c96143dbae2544fafcab32b 236 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 236 73.791 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 R615_08655 d9b94ec85c96143dbae2544fafcab32b 236 Gene3D G3DSA:3.40.630.70 62 233 1.7E-54 T 12-10-2018 R615_08655 d9b94ec85c96143dbae2544fafcab32b 236 Gene3D G3DSA:2.30.210.20 5 61 5.1E-17 T 12-10-2018 R615_08655 d9b94ec85c96143dbae2544fafcab32b 236 SUPERFAMILY SSF55729 8 228 1.05E-68 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 SMART SM00228 206 275 1.1E-9 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 SMART SM00228 110 182 2.1E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 446 4.7E-124 T 12-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 SUPERFAMILY SSF50156 84 181 1.29E-17 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 Gene3D G3DSA:2.30.42.10 215 302 1.1E-18 T 12-10-2018 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 Gene3D G3DSA:2.30.42.10 122 214 4.4E-23 T 12-10-2018 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 SUPERFAMILY SSF50156 201 287 9.07E-18 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 Pfam PF02163 Peptidase family M50 5 434 1.9E-82 T 12-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 Pfam PF13180 PDZ domain 208 280 1.5E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_05495 e1c22b5cbeb63a39407832148e2953e9 446 Pfam PF13180 PDZ domain 125 179 1.9E-8 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_16465 ea277a3676734dae794633af64aef302 180 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 8 168 1.5E-80 T 12-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 R615_16465 ea277a3676734dae794633af64aef302 180 PIRSF PIRSF006443 1 166 2.7E-62 T 12-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 R615_16465 ea277a3676734dae794633af64aef302 180 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 153 1.3E-35 T 12-10-2018 IPR001453 MoaB/Mog domain R615_16465 ea277a3676734dae794633af64aef302 180 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 73 86 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 R615_16465 ea277a3676734dae794633af64aef302 180 SUPERFAMILY SSF53218 7 167 1.31E-44 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily R615_16465 ea277a3676734dae794633af64aef302 180 Pfam PF00994 Probable molybdopterin binding domain 16 156 2.1E-33 T 12-10-2018 IPR001453 MoaB/Mog domain R615_16465 ea277a3676734dae794633af64aef302 180 Gene3D G3DSA:3.40.980.10 3 173 2.4E-50 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily R615_16465 ea277a3676734dae794633af64aef302 180 SMART SM00852 15 159 6.4E-25 T 12-10-2018 IPR001453 MoaB/Mog domain R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 SMART SM00421 151 208 2.2E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 SUPERFAMILY SSF46894 139 212 5.1E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 Gene3D G3DSA:3.40.50.2300 3 133 1.8E-24 T 12-10-2018 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 SMART SM00448 5 119 6.2E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 Pfam PF00072 Response regulator receiver domain 7 119 6.7E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.2E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.2E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.2E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 206 1.9E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 SUPERFAMILY SSF52172 6 134 3.98E-25 T 12-10-2018 IPR011006 CheY-like superfamily R615_11985 5051cd0ebdcd6d37666bab953d41b2bb 229 Gene3D G3DSA:1.10.10.10 152 218 3.5E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 Gene3D G3DSA:3.40.50.2300 10 148 1.3E-33 T 12-10-2018 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 Gene3D G3DSA:1.10.10.10 157 217 1.8E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 SUPERFAMILY SSF46894 149 215 2.89E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 SMART SM00421 156 213 1.2E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 213 7.0E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 1.4E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 1.4E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_02340 5f72ccfcfbb9d523ad04818a91a7691b 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 1.4E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 252 413 1.4E-40 T 12-10-2018 IPR000160 GGDEF domain R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 SUPERFAMILY SSF52172 123 256 5.12E-33 T 12-10-2018 IPR011006 CheY-like superfamily R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 SMART SM00267 243 415 1.4E-40 T 12-10-2018 IPR000160 GGDEF domain R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 Gene3D G3DSA:3.40.50.2300 2 124 2.2E-14 T 12-10-2018 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 SUPERFAMILY SSF55073 261 413 5.73E-39 T 12-10-2018 IPR029787 Nucleotide cyclase R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 SMART SM00448 125 239 3.9E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 SMART SM00448 2 119 8.0E-5 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 Gene3D G3DSA:3.40.50.2300 125 255 3.4E-32 T 12-10-2018 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 Pfam PF00990 Diguanylate cyclase, GGDEF domain 257 410 2.9E-36 T 12-10-2018 IPR000160 GGDEF domain R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 Gene3D G3DSA:3.30.70.270 256 416 4.4E-46 T 12-10-2018 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 Pfam PF00072 Response regulator receiver domain 5 105 4.1E-9 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 Pfam PF00072 Response regulator receiver domain 127 236 6.4E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15300 2d665d1dc18551db5b0943f0bd912de4 420 SUPERFAMILY SSF52172 3 104 1.31E-13 T 12-10-2018 IPR011006 CheY-like superfamily R615_12530 a56127396b94f59436277eaa91c8b3ee 705 PRINTS PR01041 Methionyl-tRNA synthetase signature 91 102 8.4E-26 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 8.4E-26 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 PRINTS PR01041 Methionyl-tRNA synthetase signature 252 263 8.4E-26 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 PRINTS PR01041 Methionyl-tRNA synthetase signature 43 57 8.4E-26 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 PRINTS PR01041 Methionyl-tRNA synthetase signature 292 307 8.4E-26 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 PRINTS PR01041 Methionyl-tRNA synthetase signature 11 24 8.4E-26 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Pfam PF09334 tRNA synthetases class I (M) 9 397 5.3E-156 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Gene3D G3DSA:2.20.28.20 143 177 5.3E-153 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Pfam PF01588 Putative tRNA binding domain 609 702 1.5E-22 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 9 534 2.5E-179 T 12-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 SUPERFAMILY SSF57770 143 176 1.12E-11 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Gene3D G3DSA:3.40.50.620 9 385 5.3E-153 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_12530 a56127396b94f59436277eaa91c8b3ee 705 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 572 704 3.2E-43 T 12-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Gene3D G3DSA:1.10.730.10 390 526 2.4E-28 T 12-10-2018 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 27 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Gene3D G3DSA:2.40.50.140 593 705 5.7E-33 T 12-10-2018 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 SUPERFAMILY SSF50249 599 704 1.52E-31 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12530 a56127396b94f59436277eaa91c8b3ee 705 Hamap MF_00098 Methionine--tRNA ligase [metG]. 7 545 39.199 T 12-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 SUPERFAMILY SSF47323 390 543 1.79E-37 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_12530 a56127396b94f59436277eaa91c8b3ee 705 SUPERFAMILY SSF52374 6 388 2.94E-100 T 12-10-2018 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 14 624 44.433 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 15 286 1.7E-118 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 17 623 5.7E-264 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 Gene3D G3DSA:3.40.50.920 494 624 7.9E-37 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 Pfam PF02779 Transketolase, pyrimidine binding domain 317 477 2.4E-37 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 Pfam PF02780 Transketolase, C-terminal domain 506 615 5.6E-19 T 12-10-2018 IPR033248 Transketolase, C-terminal domain R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 ProSitePatterns PS00802 Transketolase signature 2. 424 440 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 SUPERFAMILY SSF52518 10 380 4.51E-76 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 Gene3D G3DSA:3.40.50.970 316 490 9.0E-66 T 12-10-2018 R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 SMART SM00861 318 482 1.4E-65 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 SUPERFAMILY SSF52518 316 501 2.11E-55 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_15135 1d7e73f2563293ffaf0775e558d51a7e 627 SUPERFAMILY SSF52922 491 623 4.97E-26 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 R615_07290 90be2881bd695836cb60d48f49098de7 204 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 204 29.478 T 12-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 R615_07290 90be2881bd695836cb60d48f49098de7 204 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 202 2.0E-105 T 12-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 R615_07290 90be2881bd695836cb60d48f49098de7 204 PIRSF PIRSF006102 1 204 1.9E-60 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_07290 90be2881bd695836cb60d48f49098de7 204 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 202 7.8E-58 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_05500 6540814503b1e2985762632512a2b602 852 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 22 852 2.9E-259 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 R615_05500 6540814503b1e2985762632512a2b602 852 Pfam PF01103 Surface antigen 446 852 2.7E-78 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:3.10.20.310 90 171 4.3E-17 T 12-10-2018 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:2.40.160.50 424 687 1.5E-73 T 12-10-2018 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:2.40.160.50 705 852 3.0E-34 T 12-10-2018 R615_05500 6540814503b1e2985762632512a2b602 852 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 852 25.11 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:3.10.20.310 174 262 1.5E-24 T 12-10-2018 R615_05500 6540814503b1e2985762632512a2b602 852 PIRSF PIRSF006076 1 852 4.5E-256 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:3.10.20.310 263 344 1.8E-14 T 12-10-2018 R615_05500 6540814503b1e2985762632512a2b602 852 Pfam PF07244 Surface antigen variable number repeat 174 261 1.9E-17 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 R615_05500 6540814503b1e2985762632512a2b602 852 Pfam PF07244 Surface antigen variable number repeat 264 342 3.3E-8 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 R615_05500 6540814503b1e2985762632512a2b602 852 Pfam PF07244 Surface antigen variable number repeat 346 419 9.1E-14 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 R615_05500 6540814503b1e2985762632512a2b602 852 Pfam PF07244 Surface antigen variable number repeat 90 170 7.2E-10 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:3.10.20.310 345 419 1.3E-21 T 12-10-2018 R615_05500 6540814503b1e2985762632512a2b602 852 Gene3D G3DSA:3.10.20.310 16 88 3.6E-17 T 12-10-2018 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 533 44.989 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 SUPERFAMILY SSF53927 220 533 1.81E-128 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 SUPERFAMILY SSF52335 7 195 1.96E-67 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 SMART SM00851 19 132 9.7E-58 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 533 1.8E-234 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 464 1.6E-116 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 Gene3D G3DSA:3.40.50.1380 1 200 3.2E-82 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 Pfam PF02142 MGS-like domain 19 132 7.0E-28 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 PIRSF PIRSF000414 1 533 2.0E-216 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 SMART SM00798 137 465 3.1E-209 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 Gene3D G3DSA:3.40.140.20 397 533 9.3E-61 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_03420 bb24448c807a17a8fc5113f248ee8e73 533 Gene3D G3DSA:3.40.140.20 218 377 3.2E-54 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_14220 dd34fd085fe0c26a7ca009a976e0d7db 327 Hamap MF_01497 Stress response kinase A [srkA]. 2 318 46.058 T 12-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 R615_14220 dd34fd085fe0c26a7ca009a976e0d7db 327 Gene3D G3DSA:1.10.510.10 58 258 4.1E-117 T 12-10-2018 R615_14220 dd34fd085fe0c26a7ca009a976e0d7db 327 Pfam PF01636 Phosphotransferase enzyme family 33 253 7.0E-32 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase R615_14220 dd34fd085fe0c26a7ca009a976e0d7db 327 SUPERFAMILY SSF56112 3 322 3.4E-74 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_14220 dd34fd085fe0c26a7ca009a976e0d7db 327 Gene3D G3DSA:1.20.1270.170 147 307 4.1E-117 T 12-10-2018 R615_14220 dd34fd085fe0c26a7ca009a976e0d7db 327 Gene3D G3DSA:3.30.200.70 11 106 4.1E-117 T 12-10-2018 R615_01340 c810ac632b94f5e750598155671a469e 335 Gene3D G3DSA:1.10.10.10 4 95 4.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_01340 c810ac632b94f5e750598155671a469e 335 SUPERFAMILY SSF46785 14 203 1.43E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_01340 c810ac632b94f5e750598155671a469e 335 SUPERFAMILY SSF53335 157 309 1.84E-27 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_01340 c810ac632b94f5e750598155671a469e 335 Pfam PF12840 Helix-turn-helix domain 16 73 5.5E-14 T 12-10-2018 R615_01340 c810ac632b94f5e750598155671a469e 335 SMART SM00418 16 102 1.1E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_01340 c810ac632b94f5e750598155671a469e 335 Pfam PF13489 Methyltransferase domain 163 293 4.4E-17 T 12-10-2018 R615_01340 c810ac632b94f5e750598155671a469e 335 Gene3D G3DSA:3.40.50.150 117 312 8.5E-27 T 12-10-2018 R615_01340 c810ac632b94f5e750598155671a469e 335 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 9.2E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_01340 c810ac632b94f5e750598155671a469e 335 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 9.2E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_01340 c810ac632b94f5e750598155671a469e 335 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 65 80 9.2E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_10840 9b4344e6ed37eeb4c9a09e7572fb79fd 117 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 106 1.8E-24 T 12-10-2018 IPR009241 Toxin HigB-like R615_07700 db02efb97afb3524949111e7b16051d7 223 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 10 211 1.2E-52 T 12-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain R615_01225 f1c6fd55069533c625a6027db4211a80 185 SUPERFAMILY SSF143456 5 185 1.31E-60 T 12-10-2018 R615_01225 f1c6fd55069533c625a6027db4211a80 185 Gene3D G3DSA:3.40.1740.10 3 185 5.3E-66 T 12-10-2018 R615_01225 f1c6fd55069533c625a6027db4211a80 185 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 5 185 34.48 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 R615_01225 f1c6fd55069533c625a6027db4211a80 185 Pfam PF02622 Uncharacterized ACR, COG1678 16 172 2.4E-46 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 R615_05685 1ec7377991a7079586875446dd1a1068 329 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_05685 1ec7377991a7079586875446dd1a1068 329 SMART SM00363 7 68 9.4E-10 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_05685 1ec7377991a7079586875446dd1a1068 329 SUPERFAMILY SSF55120 68 230 8.39E-36 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_05685 1ec7377991a7079586875446dd1a1068 329 SUPERFAMILY SSF55174 7 62 1.62E-12 T 12-10-2018 R615_05685 1ec7377991a7079586875446dd1a1068 329 Pfam PF01479 S4 domain 8 52 3.5E-11 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_05685 1ec7377991a7079586875446dd1a1068 329 Gene3D G3DSA:3.30.70.580 70 229 3.7E-53 T 12-10-2018 R615_05685 1ec7377991a7079586875446dd1a1068 329 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 226 7.5E-49 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_05685 1ec7377991a7079586875446dd1a1068 329 Pfam PF00849 RNA pseudouridylate synthase 69 194 8.6E-13 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_05685 1ec7377991a7079586875446dd1a1068 329 Gene3D G3DSA:3.10.290.10 1 62 3.0E-23 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_05685 1ec7377991a7079586875446dd1a1068 329 Gene3D G3DSA:3.30.70.1560 134 207 3.7E-53 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 SUPERFAMILY SSF82693 46 128 4.19E-19 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:1.20.1640.10 13 509 4.1E-269 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:3.30.2090.10 714 802 4.1E-269 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Pfam PF00873 AcrB/AcrD/AcrF family 6 1030 1.8E-239 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 SUPERFAMILY SSF82714 716 799 1.23E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 9.9E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:3.30.70.1320 135 330 4.1E-269 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:3.30.70.1430 560 662 4.1E-269 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 SUPERFAMILY SSF82866 801 1034 3.92E-46 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1034 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:3.30.2090.10 181 272 4.1E-269 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 SUPERFAMILY SSF82866 294 498 1.44E-40 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:3.30.70.1430 42 810 4.1E-269 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 SUPERFAMILY SSF82693 137 328 5.49E-24 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 SUPERFAMILY SSF82714 185 269 1.96E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:3.30.70.1440 663 860 4.1E-269 T 12-10-2018 R615_09005 a133c126ce54e406ab92aceb0e741e7d 1036 Gene3D G3DSA:1.20.1640.10 510 1028 4.1E-269 T 12-10-2018 R615_00150 6f2836127f92981d645802fefd0d7c6a 204 ProSitePatterns PS00893 Nudix box signature. 94 115 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_00150 6f2836127f92981d645802fefd0d7c6a 204 SUPERFAMILY SSF55811 20 198 1.76E-41 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_00150 6f2836127f92981d645802fefd0d7c6a 204 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 16 195 1.7E-53 T 12-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 R615_00150 6f2836127f92981d645802fefd0d7c6a 204 Pfam PF00293 NUDIX domain 53 161 2.2E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_00150 6f2836127f92981d645802fefd0d7c6a 204 Gene3D G3DSA:3.90.79.10 2 203 3.5E-60 T 12-10-2018 R615_16765 964d183215adaa68dba14647eeaff087 596 SMART SM00382 340 461 0.0026 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_16765 964d183215adaa68dba14647eeaff087 596 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 67 167 6.2E-14 T 12-10-2018 IPR007831 General secretory system II, protein E, N-terminal R615_16765 964d183215adaa68dba14647eeaff087 596 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 407 421 - T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_16765 964d183215adaa68dba14647eeaff087 596 Gene3D G3DSA:3.30.450.90 176 312 2.0E-40 T 12-10-2018 R615_16765 964d183215adaa68dba14647eeaff087 596 Gene3D G3DSA:3.40.50.300 316 593 5.4E-104 T 12-10-2018 R615_16765 964d183215adaa68dba14647eeaff087 596 Pfam PF00437 Type II/IV secretion system protein 217 479 9.8E-75 T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_16765 964d183215adaa68dba14647eeaff087 596 SUPERFAMILY SSF160246 10 160 1.73E-11 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily R615_16765 964d183215adaa68dba14647eeaff087 596 SUPERFAMILY SSF52540 201 586 1.38E-95 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01195 0e54ea2782b7912ccc374f92cc92ceb8 42 Pfam PF13627 Prokaryotic lipoprotein-attachment site 11 31 1.3E-9 T 12-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 76 99 - T 12-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Gene3D G3DSA:3.30.830.10 275 499 5.2E-52 T 12-10-2018 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Gene3D G3DSA:3.30.830.10 502 880 3.8E-121 T 12-10-2018 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Gene3D G3DSA:3.30.830.10 20 262 7.8E-83 T 12-10-2018 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 SUPERFAMILY SSF63411 267 484 4.64E-54 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Pfam PF16187 Middle or third domain of peptidase_M16 400 675 1.6E-67 T 12-10-2018 IPR032632 Peptidase M16, middle/third domain R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 SUPERFAMILY SSF63411 31 261 1.08E-58 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Pfam PF00675 Insulinase (Peptidase family M16) 55 192 1.4E-36 T 12-10-2018 IPR011765 Peptidase M16, N-terminal R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Pfam PF05193 Peptidase M16 inactive domain 679 815 2.1E-10 T 12-10-2018 IPR007863 Peptidase M16, C-terminal R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Pfam PF05193 Peptidase M16 inactive domain 216 386 4.1E-24 T 12-10-2018 IPR007863 Peptidase M16, C-terminal R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 SUPERFAMILY SSF63411 502 726 2.97E-50 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 SUPERFAMILY SSF63411 733 926 7.68E-39 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_12240 35c1529eeb6eb21e879e614a7b8b259e 953 Gene3D G3DSA:3.30.830.10 649 911 3.8E-121 T 12-10-2018 R615_04965 1cc9707d79b08407573508a9abe2a8e1 138 SUPERFAMILY SSF81593 5 126 1.06E-36 T 12-10-2018 R615_04965 1cc9707d79b08407573508a9abe2a8e1 138 Gene3D G3DSA:1.20.120.330 12 136 3.0E-34 T 12-10-2018 R615_04965 1cc9707d79b08407573508a9abe2a8e1 138 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 11 127 1.2E-29 T 12-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 R615_04965 1cc9707d79b08407573508a9abe2a8e1 138 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 10 132 6.4E-41 T 12-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 R615_03900 fd5c474992b168c8d49e31bc27fb7e8f 160 Gene3D G3DSA:2.40.280.10 8 134 2.0E-46 T 12-10-2018 IPR023620 Small protein B R615_03900 fd5c474992b168c8d49e31bc27fb7e8f 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 1.1E-51 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 R615_03900 fd5c474992b168c8d49e31bc27fb7e8f 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 67.261 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 R615_03900 fd5c474992b168c8d49e31bc27fb7e8f 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 136 7.0E-41 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 R615_03900 fd5c474992b168c8d49e31bc27fb7e8f 160 SUPERFAMILY SSF74982 9 138 1.11E-47 T 12-10-2018 IPR023620 Small protein B R615_03900 fd5c474992b168c8d49e31bc27fb7e8f 160 Pfam PF01668 SmpB protein 14 157 2.0E-57 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 R615_11025 62e577bc6687341410e260a081be4049 304 PIRSF PIRSF006268 6 299 6.4E-69 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 R615_11025 62e577bc6687341410e260a081be4049 304 SUPERFAMILY SSF143631 9 285 1.15E-84 T 12-10-2018 IPR003374 ApbE-like superfamily R615_11025 62e577bc6687341410e260a081be4049 304 Gene3D G3DSA:3.10.520.20 4 300 6.8E-86 T 12-10-2018 R615_11025 62e577bc6687341410e260a081be4049 304 Pfam PF02424 ApbE family 33 287 1.2E-72 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 138 155 2.6E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 155 175 2.6E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 SMART SM00448 6 115 2.4E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 Gene3D G3DSA:1.10.10.60 120 175 3.9E-25 T 12-10-2018 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 SUPERFAMILY SSF52172 6 161 1.57E-25 T 12-10-2018 IPR011006 CheY-like superfamily R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 Gene3D G3DSA:3.40.50.2300 7 119 3.6E-24 T 12-10-2018 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 Pfam PF00072 Response regulator receiver domain 9 114 1.8E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01545 e3f869ae4020e4b1f613c4f7f6729014 176 Pfam PF02954 Bacterial regulatory protein, Fis family 132 172 2.0E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 SUPERFAMILY SSF52402 164 283 2.76E-22 T 12-10-2018 R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 SUPERFAMILY SSF52402 2 155 7.2E-15 T 12-10-2018 R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 Gene3D G3DSA:3.40.50.12370 2 283 1.9E-65 T 12-10-2018 R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 Pfam PF00582 Universal stress protein family 2 155 5.2E-11 T 12-10-2018 IPR006016 UspA R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 Pfam PF00582 Universal stress protein family 205 283 1.7E-9 T 12-10-2018 IPR006016 UspA R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 PRINTS PR01438 Universal stress protein signature 243 255 2.9E-9 T 12-10-2018 IPR006015 Universal stress protein A R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 PRINTS PR01438 Universal stress protein signature 261 283 2.9E-9 T 12-10-2018 IPR006015 Universal stress protein A R615_00635 0b15c0eb166047051e516a78e5d4ac89 283 PRINTS PR01438 Universal stress protein signature 163 181 2.9E-9 T 12-10-2018 IPR006015 Universal stress protein A R615_01465 7930ac1367ad62b7fa80e5d7ed307b2b 115 SUPERFAMILY SSF89360 6 101 2.55E-27 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 R615_01465 7930ac1367ad62b7fa80e5d7ed307b2b 115 Pfam PF01521 Iron-sulphur cluster biosynthesis 11 110 3.6E-18 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 R615_01465 7930ac1367ad62b7fa80e5d7ed307b2b 115 Gene3D G3DSA:2.60.300.12 10 115 1.9E-33 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 R615_01465 7930ac1367ad62b7fa80e5d7ed307b2b 115 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 96 113 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 R615_01465 7930ac1367ad62b7fa80e5d7ed307b2b 115 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 11 115 4.4E-36 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 R615_01465 7930ac1367ad62b7fa80e5d7ed307b2b 115 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 115 32.47 T 12-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 R615_06650 62518678f0077a17ef1684004c073b9b 332 Gene3D G3DSA:2.40.50.100 35 177 2.5E-55 T 12-10-2018 R615_06650 62518678f0077a17ef1684004c073b9b 332 Gene3D G3DSA:1.10.287.470 70 143 2.5E-55 T 12-10-2018 R615_06650 62518678f0077a17ef1684004c073b9b 332 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 11 330 1.2E-62 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_06650 62518678f0077a17ef1684004c073b9b 332 SUPERFAMILY SSF111369 31 250 4.84E-23 T 12-10-2018 R615_06650 62518678f0077a17ef1684004c073b9b 332 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 37 249 2.6E-19 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_06650 62518678f0077a17ef1684004c073b9b 332 Gene3D G3DSA:2.40.420.20 259 328 2.5E-55 T 12-10-2018 R615_06650 62518678f0077a17ef1684004c073b9b 332 Gene3D G3DSA:2.40.30.170 25 258 2.5E-55 T 12-10-2018 R615_07795 681b3e8b81919723937749e35aa7c149 614 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 149 276 3.2E-8 T 12-10-2018 IPR000014 PAS domain R615_07795 681b3e8b81919723937749e35aa7c149 614 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 279 404 1.2E-20 T 12-10-2018 IPR000014 PAS domain R615_07795 681b3e8b81919723937749e35aa7c149 614 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 522 609 3.6E-7 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07795 681b3e8b81919723937749e35aa7c149 614 Gene3D G3DSA:3.30.565.10 474 613 1.3E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07795 681b3e8b81919723937749e35aa7c149 614 Pfam PF00989 PAS fold 281 394 3.9E-13 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_07795 681b3e8b81919723937749e35aa7c149 614 SMART SM00086 227 269 5.9 T 12-10-2018 IPR001610 PAC motif R615_07795 681b3e8b81919723937749e35aa7c149 614 SMART SM00086 357 397 6.2 T 12-10-2018 IPR001610 PAC motif R615_07795 681b3e8b81919723937749e35aa7c149 614 Pfam PF08448 PAS fold 30 141 3.4E-15 T 12-10-2018 IPR013656 PAS fold-4 R615_07795 681b3e8b81919723937749e35aa7c149 614 SUPERFAMILY SSF55785 26 133 8.2E-11 T 12-10-2018 IPR035965 PAS domain superfamily R615_07795 681b3e8b81919723937749e35aa7c149 614 Gene3D G3DSA:3.30.450.20 281 399 2.1E-24 T 12-10-2018 R615_07795 681b3e8b81919723937749e35aa7c149 614 SUPERFAMILY SSF55874 486 609 8.25E-15 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07795 681b3e8b81919723937749e35aa7c149 614 Gene3D G3DSA:3.30.450.20 160 280 1.9E-24 T 12-10-2018 R615_07795 681b3e8b81919723937749e35aa7c149 614 SUPERFAMILY SSF55785 141 260 1.01E-13 T 12-10-2018 IPR035965 PAS domain superfamily R615_07795 681b3e8b81919723937749e35aa7c149 614 SUPERFAMILY SSF55785 266 395 5.96E-24 T 12-10-2018 IPR035965 PAS domain superfamily R615_07795 681b3e8b81919723937749e35aa7c149 614 SMART SM00387 514 611 4.2E-10 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07795 681b3e8b81919723937749e35aa7c149 614 SMART SM00091 24 89 21.0 T 12-10-2018 IPR000014 PAS domain R615_07795 681b3e8b81919723937749e35aa7c149 614 SMART SM00091 152 218 1.2E-4 T 12-10-2018 IPR000014 PAS domain R615_07795 681b3e8b81919723937749e35aa7c149 614 SMART SM00091 281 347 2.2E-10 T 12-10-2018 IPR000014 PAS domain R615_07795 681b3e8b81919723937749e35aa7c149 614 Pfam PF13426 PAS domain 167 267 2.4E-9 T 12-10-2018 IPR000014 PAS domain R615_07795 681b3e8b81919723937749e35aa7c149 614 Gene3D G3DSA:3.30.450.20 21 141 1.1E-14 T 12-10-2018 R615_07795 681b3e8b81919723937749e35aa7c149 614 Pfam PF07568 Histidine kinase 417 491 4.5E-25 T 12-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain R615_17480 8450b0f669c2af49055ed1140eef515a 584 Gene3D G3DSA:3.40.50.300 420 582 1.9E-14 T 12-10-2018 R615_17480 8450b0f669c2af49055ed1140eef515a 584 Pfam PF13538 UvrD-like helicase C-terminal domain 523 566 1.3E-7 T 12-10-2018 IPR027785 UvrD-like helicase C-terminal domain R615_17480 8450b0f669c2af49055ed1140eef515a 584 SUPERFAMILY SSF52540 227 572 9.34E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17480 8450b0f669c2af49055ed1140eef515a 584 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 245 357 4.9E-5 T 12-10-2018 IPR018647 Domain of unknown function DUF2075 R615_17480 8450b0f669c2af49055ed1140eef515a 584 Pfam PF08378 Nuclease-related domain 28 134 9.4E-12 T 12-10-2018 IPR011528 Nuclease-related domain, NERD R615_17480 8450b0f669c2af49055ed1140eef515a 584 Gene3D G3DSA:3.40.50.300 193 419 6.2E-8 T 12-10-2018 R615_15060 b88d1bb43bf3bd464381582063d4fac6 123 Pfam PF06155 Protein of unknown function (DUF971) 6 88 1.1E-23 T 12-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 R615_15060 b88d1bb43bf3bd464381582063d4fac6 123 Gene3D G3DSA:3.30.2020.30 1 94 2.4E-22 T 12-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 R615_05125 68863cd967034a9e3f01be659d27b67d 95 Pfam PF13466 STAS domain 11 85 1.0E-11 T 12-10-2018 IPR002645 STAS domain R615_05125 68863cd967034a9e3f01be659d27b67d 95 Gene3D G3DSA:3.30.750.24 2 95 9.6E-8 T 12-10-2018 IPR036513 STAS domain superfamily R615_05125 68863cd967034a9e3f01be659d27b67d 95 SUPERFAMILY SSF52091 7 90 4.32E-8 T 12-10-2018 IPR036513 STAS domain superfamily R615_14395 f91c2334f94ad9645726fb4ea736659a 344 Gene3D G3DSA:3.90.1200.10 97 338 4.0E-76 T 12-10-2018 R615_14395 f91c2334f94ad9645726fb4ea736659a 344 Pfam PF01636 Phosphotransferase enzyme family 28 251 4.6E-24 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase R615_14395 f91c2334f94ad9645726fb4ea736659a 344 SUPERFAMILY SSF56112 11 317 2.87E-49 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_14395 f91c2334f94ad9645726fb4ea736659a 344 Gene3D G3DSA:3.30.200.20 6 96 7.5E-17 T 12-10-2018 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 SUPERFAMILY SSF53850 88 295 8.22E-39 T 12-10-2018 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 Gene3D G3DSA:3.40.190.10 161 267 1.9E-74 T 12-10-2018 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 SUPERFAMILY SSF46785 1 85 1.62E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_00855 2e69581b7c7cd8145936913fa0af4642 299 Pfam PF03466 LysR substrate binding domain 88 291 2.3E-43 T 12-10-2018 IPR005119 LysR, substrate-binding R615_00855 2e69581b7c7cd8145936913fa0af4642 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 Gene3D G3DSA:1.10.10.10 1 85 3.2E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00855 2e69581b7c7cd8145936913fa0af4642 299 Gene3D G3DSA:3.40.190.10 92 289 1.9E-74 T 12-10-2018 R615_00855 2e69581b7c7cd8145936913fa0af4642 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.7E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_13880 72e7e94cf5ad908ba1451bb1b17382f4 205 Gene3D G3DSA:3.40.50.300 14 205 7.4E-60 T 12-10-2018 R615_13880 72e7e94cf5ad908ba1451bb1b17382f4 205 PIRSF PIRSF015617 9 205 6.1E-61 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 R615_13880 72e7e94cf5ad908ba1451bb1b17382f4 205 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 32 205 2.7E-57 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 R615_13880 72e7e94cf5ad908ba1451bb1b17382f4 205 SUPERFAMILY SSF52540 15 205 3.08E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13880 72e7e94cf5ad908ba1451bb1b17382f4 205 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 7 29 1.3E-6 T 12-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 R615_13880 72e7e94cf5ad908ba1451bb1b17382f4 205 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 36 205 9.8E-54 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 R615_11470 832179023a8d9e0cf4a34c2fda1ac37e 319 Gene3D G3DSA:3.40.50.300 18 184 2.2E-43 T 12-10-2018 R615_11470 832179023a8d9e0cf4a34c2fda1ac37e 319 PIRSF PIRSF002849 1 319 1.4E-131 T 12-10-2018 R615_11470 832179023a8d9e0cf4a34c2fda1ac37e 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 167 2.5E-64 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 R615_11470 832179023a8d9e0cf4a34c2fda1ac37e 319 SUPERFAMILY SSF52540 7 292 5.24E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11470 832179023a8d9e0cf4a34c2fda1ac37e 319 Gene3D G3DSA:1.10.8.300 201 316 4.7E-40 T 12-10-2018 R615_14820 2c55d6db8f68dbbce9a643f8bd50a3b0 158 Pfam PF04073 Aminoacyl-tRNA editing domain 24 145 8.6E-26 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 R615_14820 2c55d6db8f68dbbce9a643f8bd50a3b0 158 Gene3D G3DSA:3.90.960.10 1 158 7.9E-58 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 R615_14820 2c55d6db8f68dbbce9a643f8bd50a3b0 158 PIRSF PIRSF006181 1 158 1.8E-51 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC R615_14820 2c55d6db8f68dbbce9a643f8bd50a3b0 158 SUPERFAMILY SSF55826 2 155 7.46E-45 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 R615_14820 2c55d6db8f68dbbce9a643f8bd50a3b0 158 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 4.7E-55 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC R615_13150 38e1bacf8f8179e7e50c833dc34fe1a3 199 Gene3D G3DSA:3.40.630.30 3 198 1.1E-34 T 12-10-2018 R615_13150 38e1bacf8f8179e7e50c833dc34fe1a3 199 Pfam PF00583 Acetyltransferase (GNAT) family 25 174 2.4E-9 T 12-10-2018 IPR000182 GNAT domain R615_13150 38e1bacf8f8179e7e50c833dc34fe1a3 199 SUPERFAMILY SSF55729 6 193 1.96E-17 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_14435 a49bfff992080dab6ed44b3641ea7627 640 SUPERFAMILY SSF52540 75 345 2.1E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_14435 a49bfff992080dab6ed44b3641ea7627 640 SMART SM00763 19 376 3.1E-208 T 12-10-2018 IPR013153 PrkA AAA domain R615_14435 a49bfff992080dab6ed44b3641ea7627 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 1.1E-73 T 12-10-2018 IPR010650 PrkA C-terminal domain R615_14435 a49bfff992080dab6ed44b3641ea7627 640 Pfam PF08298 PrkA AAA domain 19 376 1.6E-174 T 12-10-2018 IPR013153 PrkA AAA domain R615_14435 a49bfff992080dab6ed44b3641ea7627 640 PIRSF PIRSF000549 1 640 2.4E-286 T 12-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.527 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 Pfam PF01165 Ribosomal protein S21 4 56 3.5E-23 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.3E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.3E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.3E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.3E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 12-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 Gene3D G3DSA:1.20.5.1150 16 54 2.3E-22 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 44 1.0E-9 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_14500 e0594ce68c280d59a071a35ef55580cc 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.6E-25 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 Pfam PF00072 Response regulator receiver domain 10 121 3.1E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 Gene3D G3DSA:3.40.50.2300 2 132 1.2E-40 T 12-10-2018 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 Gene3D G3DSA:1.10.10.10 133 232 2.0E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00800 40c513224fceba87008f3ea44beb4bcb 234 SMART SM00448 8 121 1.8E-45 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 SUPERFAMILY SSF52172 3 130 2.13E-44 T 12-10-2018 IPR011006 CheY-like superfamily R615_00800 40c513224fceba87008f3ea44beb4bcb 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 229 2.1E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 8 230 7.0E-109 T 12-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 SUPERFAMILY SSF46894 134 230 4.82E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_00800 40c513224fceba87008f3ea44beb4bcb 234 SMART SM00862 155 229 3.5E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_02080 e9031ddff60261015e5827488e6fbb18 1326 Pfam PF13502 AsmA-like C-terminal region 1044 1287 2.5E-43 T 12-10-2018 IPR032712 AsmA-like, C-terminal R615_02080 e9031ddff60261015e5827488e6fbb18 1326 Pfam PF13116 Protein of unknown function 530 800 2.0E-41 T 12-10-2018 IPR025263 Domain of unknown function DUF3971 R615_02080 e9031ddff60261015e5827488e6fbb18 1326 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 11 1290 4.8E-176 T 12-10-2018 IPR011836 Conserved hypothetical protein CHP02099 R615_01895 6433486c836ea5df6b9f4e2dbbaaf9e3 410 Gene3D G3DSA:1.20.810.10 1 409 1.2E-149 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 R615_01895 6433486c836ea5df6b9f4e2dbbaaf9e3 410 PIRSF PIRSF038885 1 410 3.4E-157 T 12-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 R615_01895 6433486c836ea5df6b9f4e2dbbaaf9e3 410 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 282 384 1.6E-41 T 12-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 R615_01895 6433486c836ea5df6b9f4e2dbbaaf9e3 410 SUPERFAMILY SSF81648 286 401 6.76E-34 T 12-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 R615_01895 6433486c836ea5df6b9f4e2dbbaaf9e3 410 Pfam PF00033 Cytochrome b/b6/petB 28 216 1.4E-63 T 12-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 R615_01895 6433486c836ea5df6b9f4e2dbbaaf9e3 410 SUPERFAMILY SSF81342 10 284 5.02E-91 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 R615_00255 3b2aa1ba944acdc9f3913c693cad1b69 535 SMART SM00052 269 514 4.1E-84 T 12-10-2018 IPR001633 EAL domain R615_00255 3b2aa1ba944acdc9f3913c693cad1b69 535 Gene3D G3DSA:3.20.20.450 272 522 1.7E-80 T 12-10-2018 IPR035919 EAL domain superfamily R615_00255 3b2aa1ba944acdc9f3913c693cad1b69 535 Pfam PF00563 EAL domain 276 509 3.6E-64 T 12-10-2018 IPR001633 EAL domain R615_00255 3b2aa1ba944acdc9f3913c693cad1b69 535 SUPERFAMILY SSF141868 275 519 3.27E-75 T 12-10-2018 IPR035919 EAL domain superfamily R615_16380 26ab7b2336bfa92f68952b58af6343cf 671 Gene3D G3DSA:3.50.50.60 46 170 7.4E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16380 26ab7b2336bfa92f68952b58af6343cf 671 Gene3D G3DSA:3.50.50.60 510 585 1.4E-23 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16380 26ab7b2336bfa92f68952b58af6343cf 671 Gene3D G3DSA:3.30.9.80 373 509 4.5E-48 T 12-10-2018 R615_16380 26ab7b2336bfa92f68952b58af6343cf 671 SUPERFAMILY SSF51905 62 307 2.07E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16380 26ab7b2336bfa92f68952b58af6343cf 671 Pfam PF06100 MCRA family 61 568 1.1E-192 T 12-10-2018 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 R615_12205 a925adecd49223755cc03fc976f979f8 368 Pfam PF14302 Domain of unknown function (DUF4377) 200 253 1.8E-7 T 12-10-2018 IPR025485 Domain of unknown function DUF4377 R615_04515 e13b93cda7a2f746095387a940712739 182 Gene3D G3DSA:2.30.30.240 107 182 2.2E-26 T 12-10-2018 R615_04515 e13b93cda7a2f746095387a940712739 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 14 182 22.263 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 R615_04515 e13b93cda7a2f746095387a940712739 182 SUPERFAMILY SSF50447 15 101 3.28E-21 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_04515 e13b93cda7a2f746095387a940712739 182 Pfam PF01782 RimM N-terminal domain 17 97 2.5E-23 T 12-10-2018 IPR002676 RimM, N-terminal GO:0006364 R615_04515 e13b93cda7a2f746095387a940712739 182 Gene3D G3DSA:2.40.30.60 7 101 1.0E-30 T 12-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 R615_04515 e13b93cda7a2f746095387a940712739 182 SUPERFAMILY SSF50346 107 182 2.55E-18 T 12-10-2018 IPR011033 PRC-barrel-like superfamily R615_04515 e13b93cda7a2f746095387a940712739 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 16 181 2.0E-46 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 R615_04515 e13b93cda7a2f746095387a940712739 182 Pfam PF05239 PRC-barrel domain 104 177 5.8E-6 T 12-10-2018 IPR027275 PRC-barrel domain R615_07925 327ec845ca935819669e040db70376ad 905 Gene3D G3DSA:3.30.499.10 372 595 4.2E-87 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 SUPERFAMILY SSF52016 636 900 4.32E-66 T 12-10-2018 R615_07925 327ec845ca935819669e040db70376ad 905 SUPERFAMILY SSF53732 18 631 8.24E-192 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 22 901 0.0 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 R615_07925 327ec845ca935819669e040db70376ad 905 Gene3D G3DSA:3.30.499.20 10 371 5.7E-131 T 12-10-2018 R615_07925 327ec845ca935819669e040db70376ad 905 Gene3D G3DSA:1.10.1440.20 596 657 1.1E-14 T 12-10-2018 R615_07925 327ec845ca935819669e040db70376ad 905 ProSitePatterns PS01244 Aconitase family signature 2. 498 511 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 149 162 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 202 215 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 173 181 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 436 447 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 371 385 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 216 231 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 280 293 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 294 307 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 PRINTS PR00415 Aconitase family signature 498 511 2.1E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 Pfam PF00694 Aconitase C-terminal domain 700 829 2.2E-37 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 Gene3D G3DSA:3.20.19.10 661 902 1.9E-82 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 R615_07925 327ec845ca935819669e040db70376ad 905 Pfam PF00330 Aconitase family (aconitate hydratase) 71 567 8.4E-158 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_05410 0784060912262bd15295b1c2d6e360ee 220 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 3 215 50.147 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 R615_05410 0784060912262bd15295b1c2d6e360ee 220 SUPERFAMILY SSF52402 3 217 7.5E-65 T 12-10-2018 R615_05410 0784060912262bd15295b1c2d6e360ee 220 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 5 202 4.4E-67 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 R615_05410 0784060912262bd15295b1c2d6e360ee 220 Gene3D G3DSA:3.40.50.620 2 214 4.4E-75 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_05410 0784060912262bd15295b1c2d6e360ee 220 Pfam PF06508 Queuosine biosynthesis protein QueC 4 207 2.3E-69 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 R615_05410 0784060912262bd15295b1c2d6e360ee 220 PIRSF PIRSF006293 1 220 7.9E-79 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 Pfam PF00158 Sigma-54 interaction domain 140 306 2.0E-71 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 SMART SM00382 160 303 2.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 Gene3D G3DSA:3.40.50.300 129 310 8.3E-66 T 12-10-2018 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 Gene3D G3DSA:3.40.50.2300 1 128 1.7E-29 T 12-10-2018 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 SUPERFAMILY SSF52172 2 183 3.27E-34 T 12-10-2018 IPR011006 CheY-like superfamily R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 Pfam PF00072 Response regulator receiver domain 4 108 3.3E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 SMART SM00448 2 108 3.0E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 Gene3D G3DSA:1.10.8.60 311 390 1.7E-21 T 12-10-2018 R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 SUPERFAMILY SSF52540 139 381 1.41E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02625 47fc23e2cda841fac9960e608d1b6ae4 469 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site R615_15510 b4c9fb758d8cd2b4fe2fbbc5191accd5 801 SUPERFAMILY SSF56935 28 801 8.37E-77 T 12-10-2018 R615_15510 b4c9fb758d8cd2b4fe2fbbc5191accd5 801 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 163 5.9E-9 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_15510 b4c9fb758d8cd2b4fe2fbbc5191accd5 801 Gene3D G3DSA:2.170.130.10 57 175 4.5E-13 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_15510 b4c9fb758d8cd2b4fe2fbbc5191accd5 801 Pfam PF00593 TonB dependent receptor 324 800 5.2E-26 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_01910 e4c560f9bc9e37f750b76804c672dc57 140 Gene3D G3DSA:2.30.30.220 2 128 5.4E-49 T 12-10-2018 IPR036760 SspB-like superfamily R615_01910 e4c560f9bc9e37f750b76804c672dc57 140 PIRSF PIRSF005276 2 140 5.4E-51 T 12-10-2018 IPR007481 Stringent starvation protein B R615_01910 e4c560f9bc9e37f750b76804c672dc57 140 SUPERFAMILY SSF101738 2 109 1.44E-45 T 12-10-2018 IPR036760 SspB-like superfamily R615_01910 e4c560f9bc9e37f750b76804c672dc57 140 Pfam PF04386 Stringent starvation protein B 8 119 7.8E-34 T 12-10-2018 IPR007481 Stringent starvation protein B R615_01155 6a058f873eb304d5c83cada5df616e3b 63 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 22 63 2.0E-9 T 12-10-2018 R615_01155 6a058f873eb304d5c83cada5df616e3b 63 Pfam PF13617 YnbE-like lipoprotein 9 60 5.9E-24 T 12-10-2018 IPR025985 YnbE-like lipoprotein R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 Gene3D G3DSA:1.10.760.10 307 455 3.1E-36 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 Pfam PF03150 Di-haem cytochrome c peroxidase 105 334 8.0E-33 T 12-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 SUPERFAMILY SSF69318 1029 1089 1.44E-6 T 12-10-2018 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 Pfam PF07593 ASPIC and UnbV 1112 1188 1.6E-16 T 12-10-2018 IPR011519 ASPIC/UnbV R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 687 748 2.3E-11 T 12-10-2018 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 798 858 1.1E-10 T 12-10-2018 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 Gene3D G3DSA:1.10.760.10 105 222 2.6E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 SUPERFAMILY SSF69318 621 942 1.22E-38 T 12-10-2018 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 SUPERFAMILY SSF46626 323 511 7.07E-26 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_12900 cedfac985f8320f4ce0abdd2f93caf2c 1197 SUPERFAMILY SSF46626 100 320 6.45E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_11075 0e6e29f65a6bb141e27b98428a54f0c6 120 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 31 8.9E-7 T 12-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system R615_02610 02eab1cc69043c0f61f0485d73f4190c 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 3 267 9.5E-102 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 R615_02610 02eab1cc69043c0f61f0485d73f4190c 269 Gene3D G3DSA:3.20.20.60 1 269 1.4E-104 T 12-10-2018 R615_02610 02eab1cc69043c0f61f0485d73f4190c 269 PIRSF PIRSF000388 1 269 2.3E-96 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 R615_02610 02eab1cc69043c0f61f0485d73f4190c 269 SUPERFAMILY SSF51621 4 267 1.69E-99 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 R615_02610 02eab1cc69043c0f61f0485d73f4190c 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 262 1.9E-103 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 R615_02610 02eab1cc69043c0f61f0485d73f4190c 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 267 40.615 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 SUPERFAMILY SSF102114 120 373 1.15E-62 T 12-10-2018 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 SMART SM00729 149 369 5.9E-63 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 Pfam PF04055 Radical SAM superfamily 153 327 1.9E-29 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 Gene3D G3DSA:3.40.50.12160 6 139 3.0E-34 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 7 441 2.8E-181 T 12-10-2018 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 Gene3D G3DSA:3.80.30.20 147 383 3.4E-83 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 Pfam PF00919 Uncharacterized protein family UPF0004 7 107 7.3E-29 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 7 440 3.0E-150 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 6 443 73.348 T 12-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 153 173 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 R615_13315 379234bd6efcee0ac9cfff4572f87f34 449 Pfam PF01938 TRAM domain 380 443 9.1E-17 T 12-10-2018 IPR002792 TRAM domain R615_07865 6c123cf567a45722f7177c3b71798e59 262 Gene3D G3DSA:3.60.15.10 6 262 9.0E-64 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_07865 6c123cf567a45722f7177c3b71798e59 262 Pfam PF00753 Metallo-beta-lactamase superfamily 39 176 5.7E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_07865 6c123cf567a45722f7177c3b71798e59 262 SMART SM00849 13 176 1.0E-27 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_07865 6c123cf567a45722f7177c3b71798e59 262 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 3 262 29.068 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 R615_07865 6c123cf567a45722f7177c3b71798e59 262 SUPERFAMILY SSF56281 1 261 2.98E-56 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_07865 6c123cf567a45722f7177c3b71798e59 262 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 177 262 3.1E-18 T 12-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 R615_17130 759c38acbf780a499165e968bae11013 157 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 13 114 3.9E-18 T 12-10-2018 IPR012659 Conserved hypothetical protein CHP02444 R615_17130 759c38acbf780a499165e968bae11013 157 Pfam PF09523 Protein of unknown function (DUF2390) 14 112 1.3E-25 T 12-10-2018 IPR012659 Conserved hypothetical protein CHP02444 R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 SUPERFAMILY SSF50891 31 186 1.4E-52 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 32 183 1.8E-45 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 Gene3D G3DSA:2.40.100.10 27 187 2.2E-59 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 66 83 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 71 83 4.9E-9 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 4.9E-9 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 4.9E-9 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 R615_06135 f8d2a1a0a6058e506274786589aaba7a 194 PIRSF PIRSF001467 15 190 1.0E-27 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 R615_01850 545c853260940f00da28232e8b67999f 962 Gene3D G3DSA:2.60.40.10 817 915 1.4E-6 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_01850 545c853260940f00da28232e8b67999f 962 Pfam PF07581 The GLUG motif 167 191 0.0019 T 12-10-2018 IPR011493 GLUG R615_01850 545c853260940f00da28232e8b67999f 962 Gene3D G3DSA:2.160.20.110 522 691 9.6E-31 T 12-10-2018 R615_01850 545c853260940f00da28232e8b67999f 962 Gene3D G3DSA:2.160.20.110 91 307 2.2E-41 T 12-10-2018 R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 Pfam PF01145 SPFH domain / Band 7 family 25 201 1.8E-29 T 12-10-2018 IPR001107 Band 7 domain R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 TIGRFAM TIGR01932 hflC: HflC protein 152 283 2.7E-47 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 TIGRFAM TIGR01932 hflC: HflC protein 7 157 6.6E-40 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 PIRSF PIRSF005651 1 289 1.9E-93 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 SUPERFAMILY SSF117892 54 191 1.44E-26 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 Gene3D G3DSA:3.30.479.30 50 187 7.9E-24 T 12-10-2018 R615_02510 be935d6ff17a48470a0be0dbeaf3a6c2 289 SMART SM00244 21 185 4.9E-37 T 12-10-2018 IPR001107 Band 7 domain R615_09385 8a74a76642d511f3ec0998b75c95cb37 163 Gene3D G3DSA:3.50.30.40 1 163 5.3E-66 T 12-10-2018 R615_09385 8a74a76642d511f3ec0998b75c95cb37 163 SUPERFAMILY SSF89562 5 159 1.57E-50 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily R615_09385 8a74a76642d511f3ec0998b75c95cb37 163 Pfam PF03737 Aldolase/RraA 6 154 1.1E-45 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein R615_09385 8a74a76642d511f3ec0998b75c95cb37 163 TIGRFAM TIGR01935 NOT-MenG: RraA family 6 155 5.4E-69 T 12-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 R615_03260 48984367c43a94eb460febaf45c81503 400 PIRSF PIRSF002401 1 382 3.2E-135 T 12-10-2018 IPR035101 GTP-binding protein, Obg-type R615_03260 48984367c43a94eb460febaf45c81503 400 SUPERFAMILY SSF52540 152 341 2.49E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03260 48984367c43a94eb460febaf45c81503 400 SUPERFAMILY SSF82051 2 158 1.7E-56 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily R615_03260 48984367c43a94eb460febaf45c81503 400 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 1.3E-141 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.575 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 Gene3D G3DSA:2.70.210.12 1 158 1.7E-61 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily R615_03260 48984367c43a94eb460febaf45c81503 400 Pfam PF01018 GTP1/OBG 4 158 7.0E-59 T 12-10-2018 IPR006169 GTP1/OBG domain R615_03260 48984367c43a94eb460febaf45c81503 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.2E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 3.2E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.2E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 3.2E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 Pfam PF01926 50S ribosome-binding GTPase 161 284 6.6E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 12-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 R615_03260 48984367c43a94eb460febaf45c81503 400 Gene3D G3DSA:3.40.50.300 159 340 6.0E-46 T 12-10-2018 R615_12505 e56a9ff3114ad5640edf6d3991306d5b 139 PIRSF PIRSF004681 1 139 1.3E-49 T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 R615_12505 e56a9ff3114ad5640edf6d3991306d5b 139 SUPERFAMILY SSF111038 1 139 4.84E-51 T 12-10-2018 IPR035917 YjbQ-like superfamily R615_12505 e56a9ff3114ad5640edf6d3991306d5b 139 Pfam PF01894 Uncharacterised protein family UPF0047 19 135 1.6E-41 T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 R615_12505 e56a9ff3114ad5640edf6d3991306d5b 139 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 100 118 - T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 R615_12505 e56a9ff3114ad5640edf6d3991306d5b 139 Gene3D G3DSA:2.60.120.460 3 139 1.7E-44 T 12-10-2018 IPR035917 YjbQ-like superfamily R615_12505 e56a9ff3114ad5640edf6d3991306d5b 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 13 139 4.0E-44 T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 R615_15045 8ce3f82843346443b65cecb73207f3a8 355 SUPERFAMILY SSF50182 174 241 3.11E-16 T 12-10-2018 IPR010920 LSM domain superfamily R615_15045 8ce3f82843346443b65cecb73207f3a8 355 SUPERFAMILY SSF82689 246 346 2.48E-20 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 R615_15045 8ce3f82843346443b65cecb73207f3a8 355 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 206 240 - T 12-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 R615_15045 8ce3f82843346443b65cecb73207f3a8 355 Gene3D G3DSA:3.30.70.100 243 340 2.8E-15 T 12-10-2018 R615_15045 8ce3f82843346443b65cecb73207f3a8 355 SUPERFAMILY SSF82861 97 173 3.01E-10 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 R615_15045 8ce3f82843346443b65cecb73207f3a8 355 Gene3D G3DSA:2.30.30.60 190 242 8.3E-12 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily R615_15045 8ce3f82843346443b65cecb73207f3a8 355 Pfam PF00924 Mechanosensitive ion channel 132 334 8.2E-55 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 Pfam PF00072 Response regulator receiver domain 5 114 6.4E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 SMART SM00448 3 115 1.1E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 SUPERFAMILY SSF55785 117 222 1.68E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 SUPERFAMILY SSF141868 356 493 1.09E-9 T 12-10-2018 IPR035919 EAL domain superfamily R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 Gene3D G3DSA:3.20.20.450 319 497 5.2E-12 T 12-10-2018 IPR035919 EAL domain superfamily R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 Gene3D G3DSA:3.30.450.20 139 227 1.2E-5 T 12-10-2018 R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 SUPERFAMILY SSF52172 3 141 6.69E-29 T 12-10-2018 IPR011006 CheY-like superfamily R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 Pfam PF00563 EAL domain 328 485 7.0E-14 T 12-10-2018 IPR001633 EAL domain R615_12230 0b5ea0c79a1cbbc55409729993f85112 503 Gene3D G3DSA:3.40.50.2300 1 138 1.7E-28 T 12-10-2018 R615_10845 2faa95273c9db366eeb87111d259b40f 100 SMART SM00530 32 87 1.7E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_10845 2faa95273c9db366eeb87111d259b40f 100 Gene3D G3DSA:1.10.260.40 10 89 2.6E-13 T 12-10-2018 R615_10845 2faa95273c9db366eeb87111d259b40f 100 SUPERFAMILY SSF47413 20 95 5.09E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_10845 2faa95273c9db366eeb87111d259b40f 100 Pfam PF13744 Helix-turn-helix domain 6 89 1.2E-12 T 12-10-2018 IPR039554 HigA2-like, helix-turn-helix domain R615_10815 675b5c089e148041b574456073a8c177 375 SUPERFAMILY SSF55031 179 288 3.29E-31 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain R615_10815 675b5c089e148041b574456073a8c177 375 Gene3D G3DSA:3.30.70.360 179 292 7.9E-130 T 12-10-2018 R615_10815 675b5c089e148041b574456073a8c177 375 Pfam PF07687 Peptidase dimerisation domain 175 282 1.9E-26 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain R615_10815 675b5c089e148041b574456073a8c177 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 52.745 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 R615_10815 675b5c089e148041b574456073a8c177 375 Pfam PF01546 Peptidase family M20/M25/M40 62 372 1.1E-45 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 R615_10815 675b5c089e148041b574456073a8c177 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 3.8E-172 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 R615_10815 675b5c089e148041b574456073a8c177 375 Gene3D G3DSA:3.40.630.10 7 362 7.9E-130 T 12-10-2018 R615_10815 675b5c089e148041b574456073a8c177 375 SUPERFAMILY SSF53187 4 374 4.19E-63 T 12-10-2018 R615_10815 675b5c089e148041b574456073a8c177 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 135 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 R615_02735 2675839081a1f6ff66231704589d7788 375 Pfam PF01551 Peptidase family M23 277 370 5.7E-22 T 12-10-2018 IPR016047 Peptidase M23 R615_02735 2675839081a1f6ff66231704589d7788 375 Gene3D G3DSA:2.70.70.10 236 374 1.7E-30 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_02735 2675839081a1f6ff66231704589d7788 375 SUPERFAMILY SSF51261 153 374 1.05E-42 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_10060 f6515d6b5676361e4be77e6a56fb52b4 340 SUPERFAMILY SSF53756 2 339 1.36E-76 T 12-10-2018 R615_10060 f6515d6b5676361e4be77e6a56fb52b4 340 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 76 310 3.7E-65 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 R615_10060 f6515d6b5676361e4be77e6a56fb52b4 340 Gene3D G3DSA:3.40.50.2000 168 314 1.5E-41 T 12-10-2018 R615_10060 f6515d6b5676361e4be77e6a56fb52b4 340 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 311 1.2E-110 T 12-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 R615_10060 f6515d6b5676361e4be77e6a56fb52b4 340 Gene3D G3DSA:3.40.50.2000 1 162 7.6E-59 T 12-10-2018 R615_09650 13b5dbaf2cf8b2daa3ac04400090e58a 295 SUPERFAMILY SSF53474 22 287 4.36E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09650 13b5dbaf2cf8b2daa3ac04400090e58a 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_09650 13b5dbaf2cf8b2daa3ac04400090e58a 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_09650 13b5dbaf2cf8b2daa3ac04400090e58a 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_09650 13b5dbaf2cf8b2daa3ac04400090e58a 295 Gene3D G3DSA:3.40.50.1820 20 289 9.1E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09650 13b5dbaf2cf8b2daa3ac04400090e58a 295 Pfam PF12697 Alpha/beta hydrolase family 35 283 2.6E-18 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 4.1E-69 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 Gene3D G3DSA:3.30.390.30 336 453 1.4E-42 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_08850 2701f5545104077cad5916ed74eed50b 453 SUPERFAMILY SSF55424 334 447 1.17E-31 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_08850 2701f5545104077cad5916ed74eed50b 453 PIRSF PIRSF000350 1 443 3.9E-87 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 R615_08850 2701f5545104077cad5916ed74eed50b 453 SUPERFAMILY SSF51905 1 358 3.33E-59 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08850 2701f5545104077cad5916ed74eed50b 453 Gene3D G3DSA:3.50.50.60 5 317 2.6E-115 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08850 2701f5545104077cad5916ed74eed50b 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 317 1.0E-71 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_08850 2701f5545104077cad5916ed74eed50b 453 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 446 1.6E-31 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 6.7E-30 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 6.7E-30 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 6.7E-30 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 6.7E-30 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 6.7E-30 T 12-10-2018 R615_08850 2701f5545104077cad5916ed74eed50b 453 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 R615_08850 2701f5545104077cad5916ed74eed50b 453 Gene3D G3DSA:3.50.50.60 143 260 2.6E-115 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03180 f8580002e260efddc097a9e86c7119f1 336 Pfam PF12069 Protein of unknown function (DUF3549) 2 328 2.8E-107 T 12-10-2018 IPR021936 Protein of unknown function DUF3549 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SMART SM00388 537 602 8.4E-23 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 687 701 1.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 746 759 1.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 740 1.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 705 715 1.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Pfam PF05231 MASE1 9 190 2.0E-21 T 12-10-2018 IPR007895 MASE1 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Gene3D G3DSA:3.40.50.2300 796 926 7.8E-38 T 12-10-2018 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 649 761 2.0E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Gene3D G3DSA:3.30.450.350 258 470 6.9E-25 T 12-10-2018 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SUPERFAMILY SSF52172 805 924 5.69E-34 T 12-10-2018 IPR011006 CheY-like superfamily R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Gene3D G3DSA:3.30.565.10 601 764 1.7E-48 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SMART SM00387 649 762 6.0E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SMART SM01079 254 444 3.1E-46 T 12-10-2018 IPR006189 CHASE domain R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Pfam PF00072 Response regulator receiver domain 810 922 4.4E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Gene3D G3DSA:1.10.287.130 506 600 4.7E-28 T 12-10-2018 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Pfam PF03924 CHASE domain 258 442 3.6E-39 T 12-10-2018 IPR006189 CHASE domain R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SMART SM00448 808 922 4.0E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SUPERFAMILY SSF55874 591 760 1.96E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 Pfam PF00512 His Kinase A (phospho-acceptor) domain 537 602 4.0E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_00455 2a4d5296d5508a6d8e68ad374f7aa660 926 SUPERFAMILY SSF47384 522 603 1.88E-21 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_02090 4ed2b4675f57d2292cb63add079cef1f 170 Gene3D G3DSA:1.10.60.30 24 98 1.0E-29 T 12-10-2018 R615_02090 4ed2b4675f57d2292cb63add079cef1f 170 Gene3D G3DSA:1.10.60.30 101 170 8.0E-23 T 12-10-2018 R615_02090 4ed2b4675f57d2292cb63add079cef1f 170 PIRSF PIRSF016183 1 170 7.0E-55 T 12-10-2018 IPR006839 Ribosome-associated, YjgA R615_02090 4ed2b4675f57d2292cb63add079cef1f 170 Pfam PF04751 Protein of unknown function (DUF615) 15 166 2.5E-51 T 12-10-2018 IPR006839 Ribosome-associated, YjgA R615_02090 4ed2b4675f57d2292cb63add079cef1f 170 SUPERFAMILY SSF158710 24 168 5.36E-47 T 12-10-2018 IPR023153 PSPTO4464-like domain superfamily R615_12810 096362d91dfbaff704a19bafdf7aca61 535 SUPERFAMILY SSF51905 3 441 1.45E-68 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_12810 096362d91dfbaff704a19bafdf7aca61 535 Pfam PF00890 FAD binding domain 8 385 4.9E-100 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 SUPERFAMILY SSF56425 231 346 5.08E-43 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 Pfam PF02910 Fumarate reductase flavoprotein C-term 434 514 1.7E-14 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 Gene3D G3DSA:1.20.58.100 418 531 1.7E-40 T 12-10-2018 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 PIRSF PIRSF000171 2 534 1.9E-31 T 12-10-2018 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 SUPERFAMILY SSF46977 419 519 2.09E-30 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 Gene3D G3DSA:3.50.50.60 8 397 6.5E-157 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_12810 096362d91dfbaff704a19bafdf7aca61 535 Gene3D G3DSA:3.90.700.10 241 351 6.5E-157 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 7 513 1.1E-199 T 12-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 348 370 1.2E-5 T 12-10-2018 R615_12810 096362d91dfbaff704a19bafdf7aca61 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.2E-5 T 12-10-2018 R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 Gene3D G3DSA:3.30.1330.10 5 167 2.2E-47 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 Hamap MF_00625 Selenide, water dikinase [selD]. 10 353 44.255 T 12-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 TIGRFAM TIGR00476 selD: selenide, water dikinase 12 319 5.8E-132 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 SUPERFAMILY SSF56042 170 343 1.05E-50 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 Gene3D G3DSA:3.90.650.10 169 352 3.0E-50 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 PIRSF PIRSF036407 6 352 9.4E-115 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 Pfam PF02769 AIR synthase related protein, C-terminal domain 175 343 2.2E-27 T 12-10-2018 IPR010918 PurM-like, C-terminal domain R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 SUPERFAMILY SSF55326 12 166 4.04E-40 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_06550 5c13ce0bbf12eb4ba315eca88b431514 354 Pfam PF00586 AIR synthase related protein, N-terminal domain 55 162 1.5E-18 T 12-10-2018 IPR016188 PurM-like, N-terminal domain R615_12960 6089ccca2ef6aa5c7758850358f7cf9c 747 SUPERFAMILY SSF56935 24 747 1.1E-73 T 12-10-2018 R615_12960 6089ccca2ef6aa5c7758850358f7cf9c 747 Gene3D G3DSA:2.170.130.10 39 163 1.1E-10 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_12960 6089ccca2ef6aa5c7758850358f7cf9c 747 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 730 747 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site R615_12960 6089ccca2ef6aa5c7758850358f7cf9c 747 Pfam PF00593 TonB dependent receptor 269 744 1.7E-36 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_12960 6089ccca2ef6aa5c7758850358f7cf9c 747 Gene3D G3DSA:2.40.170.20 168 747 1.4E-61 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 SUPERFAMILY SSF50341 16 159 6.41E-37 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 Gene3D G3DSA:3.40.50.2300 177 310 5.4E-23 T 12-10-2018 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 Gene3D G3DSA:2.40.50.180 39 154 2.4E-30 T 12-10-2018 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 SMART SM00448 180 301 1.7E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 Gene3D G3DSA:2.30.30.40 24 148 2.4E-30 T 12-10-2018 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 PIRSF PIRSF002867 1 309 1.1E-101 T 12-10-2018 IPR024181 Chemotaxis response regulator CheV R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 SMART SM00260 17 154 1.4E-25 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 Pfam PF00072 Response regulator receiver domain 182 297 1.5E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 SUPERFAMILY SSF52172 178 307 2.56E-22 T 12-10-2018 IPR011006 CheY-like superfamily R615_10040 61118df7cbc7df00f3ff7ab31ea86a44 312 Pfam PF01584 CheW-like domain 21 156 7.7E-36 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_04155 c05cab718775b60b9baa17d08196d4f6 241 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 241 38.098 T 12-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 R615_04155 c05cab718775b60b9baa17d08196d4f6 241 Gene3D G3DSA:3.40.50.150 18 241 5.4E-50 T 12-10-2018 R615_04155 c05cab718775b60b9baa17d08196d4f6 241 SUPERFAMILY SSF53335 21 241 9.14E-30 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_04155 c05cab718775b60b9baa17d08196d4f6 241 Pfam PF13649 Methyltransferase domain 62 158 1.8E-11 T 12-10-2018 R615_04155 c05cab718775b60b9baa17d08196d4f6 241 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 241 3.5E-76 T 12-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 R615_04155 c05cab718775b60b9baa17d08196d4f6 241 PIRSF PIRSF006325 1 241 1.8E-89 T 12-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 R615_14150 efb22ded48eb41a86da086271cfd2ce6 266 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 60 78 - T 12-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 R615_14150 efb22ded48eb41a86da086271cfd2ce6 266 Gene3D G3DSA:3.20.20.70 1 266 9.2E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_14150 efb22ded48eb41a86da086271cfd2ce6 266 Pfam PF00218 Indole-3-glycerol phosphate synthase 7 264 1.2E-93 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 R615_14150 efb22ded48eb41a86da086271cfd2ce6 266 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 5 266 35.718 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 R615_14150 efb22ded48eb41a86da086271cfd2ce6 266 SUPERFAMILY SSF51366 14 265 2.59E-86 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_12425 1b10c82659d23923dfb68a58d1e35685 263 PIRSF PIRSF006241 1 260 2.8E-82 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like R615_12425 1b10c82659d23923dfb68a58d1e35685 263 Gene3D G3DSA:3.20.20.150 1 257 9.0E-68 T 12-10-2018 R615_12425 1b10c82659d23923dfb68a58d1e35685 263 Pfam PF01261 Xylose isomerase-like TIM barrel 20 217 4.5E-28 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain R615_12425 1b10c82659d23923dfb68a58d1e35685 263 SUPERFAMILY SSF51658 2 255 4.01E-67 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 SMART SM00091 303 369 1.4E-6 T 12-10-2018 IPR000014 PAS domain R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 SUPERFAMILY SSF55785 303 412 1.31E-10 T 12-10-2018 IPR035965 PAS domain superfamily R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 SMART SM00267 420 591 2.7E-47 T 12-10-2018 IPR000160 GGDEF domain R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 305 409 5.8E-6 T 12-10-2018 IPR000014 PAS domain R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 Gene3D G3DSA:3.30.450.20 300 416 2.9E-15 T 12-10-2018 R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 Gene3D G3DSA:3.30.70.270 417 593 1.6E-49 T 12-10-2018 R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 Pfam PF00990 Diguanylate cyclase, GGDEF domain 433 587 9.0E-38 T 12-10-2018 IPR000160 GGDEF domain R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 429 591 2.5E-45 T 12-10-2018 IPR000160 GGDEF domain R615_04150 47d9a257d7b58896d326ecee45f7f9c7 597 SUPERFAMILY SSF55073 436 590 1.18E-41 T 12-10-2018 IPR029787 Nucleotide cyclase R615_15670 7991d3387adc977df9969ad760afff02 145 SUPERFAMILY SSF54995 1 101 5.49E-36 T 12-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15670 7991d3387adc977df9969ad760afff02 145 Pfam PF01250 Ribosomal protein S6 3 91 8.0E-26 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15670 7991d3387adc977df9969ad760afff02 145 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 8.0E-34 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15670 7991d3387adc977df9969ad760afff02 145 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.905 T 12-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_15670 7991d3387adc977df9969ad760afff02 145 Gene3D G3DSA:3.30.70.60 1 92 7.8E-31 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 R615_15670 7991d3387adc977df9969ad760afff02 145 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 12-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 R615_11935 cde096aa92f0878d988e238544c1e973 164 Pfam PF08534 Redoxin 20 161 7.9E-24 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 R615_11935 cde096aa92f0878d988e238544c1e973 164 Hamap MF_00269 Thiol peroxidase [tpx]. 3 164 34.768 T 12-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 R615_11935 cde096aa92f0878d988e238544c1e973 164 SUPERFAMILY SSF52833 1 162 1.26E-41 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11935 cde096aa92f0878d988e238544c1e973 164 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 12-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 R615_11935 cde096aa92f0878d988e238544c1e973 164 Gene3D G3DSA:3.40.30.10 1 164 1.4E-41 T 12-10-2018 R615_04105 793f42bf361cc3af41f537f6722b8600 505 SUPERFAMILY SSF54680 418 495 2.75E-14 T 12-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 SUPERFAMILY SSF47648 98 163 6.28E-12 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Gene3D G3DSA:3.40.1030.10 164 421 6.4E-88 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Pfam PF02885 Glycosyl transferase family, helical bundle domain 105 161 5.7E-9 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Gene3D G3DSA:1.20.970.10 97 162 7.4E-14 T 12-10-2018 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Gene3D G3DSA:3.90.1170.30 422 501 9.8E-20 T 12-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 SMART SM00941 431 498 2.3E-17 T 12-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 431 491 1.4E-9 T 12-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 PIRSF PIRSF000478 95 504 1.6E-117 T 12-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Hamap MF_00703 Putative thymidine phosphorylase. 9 502 57.942 T 12-10-2018 IPR028579 Putative thymidine phosphorylase KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 R615_04105 793f42bf361cc3af41f537f6722b8600 505 SUPERFAMILY SSF52418 169 411 4.45E-66 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 TIGRFAM TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase 8 490 4.1E-177 T 12-10-2018 IPR013466 Thymidine phosphorylase/AMP phosphorylase GO:0016763 R615_04105 793f42bf361cc3af41f537f6722b8600 505 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 204 219 - T 12-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_04105 793f42bf361cc3af41f537f6722b8600 505 Pfam PF00591 Glycosyl transferase family, a/b domain 170 398 1.4E-8 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_11155 c245be3ed54a1b8c1cf834e6567527ba 291 SUPERFAMILY SSF53474 34 272 3.3E-40 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11155 c245be3ed54a1b8c1cf834e6567527ba 291 Pfam PF12146 Serine aminopeptidase, S33 80 204 3.7E-19 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 R615_11155 c245be3ed54a1b8c1cf834e6567527ba 291 Gene3D G3DSA:3.40.50.1820 12 278 7.7E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08260 b2a9a2f48eb92686efb50169b1d482c2 241 SUPERFAMILY SSF56300 1 224 1.22E-22 T 12-10-2018 R615_08260 b2a9a2f48eb92686efb50169b1d482c2 241 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 241 99.38 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 R615_08260 b2a9a2f48eb92686efb50169b1d482c2 241 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 232 1.6E-78 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 R615_08260 b2a9a2f48eb92686efb50169b1d482c2 241 Pfam PF00149 Calcineurin-like phosphoesterase 3 198 2.1E-6 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_08260 b2a9a2f48eb92686efb50169b1d482c2 241 Gene3D G3DSA:3.60.21.10 1 224 4.6E-12 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_04315 871b6cf55fa0286782b3d115e6e0ea48 291 Gene3D G3DSA:3.40.50.11240 75 269 1.2E-63 T 12-10-2018 R615_04315 871b6cf55fa0286782b3d115e6e0ea48 291 Gene3D G3DSA:1.10.30.40 9 59 5.1E-10 T 12-10-2018 R615_04315 871b6cf55fa0286782b3d115e6e0ea48 291 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 16 270 1.2E-93 T 12-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 R615_04315 871b6cf55fa0286782b3d115e6e0ea48 291 PIRSF PIRSF018982 1 281 6.3E-87 T 12-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 R615_04700 3ec1749129793b84e007ce0f788f69b4 390 SUPERFAMILY SSF56349 101 382 4.41E-60 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 R615_04700 3ec1749129793b84e007ce0f788f69b4 390 Pfam PF00589 Phage integrase family 217 372 3.8E-21 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 R615_04700 3ec1749129793b84e007ce0f788f69b4 390 Gene3D G3DSA:3.30.160.390 1 98 3.0E-33 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily R615_04700 3ec1749129793b84e007ce0f788f69b4 390 Gene3D G3DSA:1.10.150.130 99 207 5.0E-28 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal R615_04700 3ec1749129793b84e007ce0f788f69b4 390 Gene3D G3DSA:1.10.443.10 208 382 5.5E-18 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 R615_04700 3ec1749129793b84e007ce0f788f69b4 390 Pfam PF13356 Arm DNA-binding domain 4 87 1.2E-17 T 12-10-2018 IPR025166 Integrase, DNA-binding domain R615_13255 3438580a5e9070a3196246d43d928c9c 285 SUPERFAMILY SSF55060 164 280 2.59E-30 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily R615_13255 3438580a5e9070a3196246d43d928c9c 285 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 7 274 32.722 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 R615_13255 3438580a5e9070a3196246d43d928c9c 285 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 8 280 4.6E-84 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 R615_13255 3438580a5e9070a3196246d43d928c9c 285 PIRSF PIRSF010376 5 281 1.7E-82 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 R615_13255 3438580a5e9070a3196246d43d928c9c 285 Gene3D G3DSA:3.30.230.10 1 161 8.4E-55 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_13255 3438580a5e9070a3196246d43d928c9c 285 Pfam PF00288 GHMP kinases N terminal domain 89 146 6.0E-12 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 R615_13255 3438580a5e9070a3196246d43d928c9c 285 Gene3D G3DSA:3.30.70.890 165 282 8.0E-28 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily R615_13255 3438580a5e9070a3196246d43d928c9c 285 SUPERFAMILY SSF54211 7 160 1.82E-47 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 484 8.2E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Gene3D G3DSA:3.40.50.2300 505 631 2.0E-36 T 12-10-2018 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 SMART SM00448 505 620 1.5E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Gene3D G3DSA:3.30.565.10 326 488 6.0E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 SMART SM00388 259 324 1.6E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 SMART SM00387 372 486 3.7E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Pfam PF00072 Response regulator receiver domain 507 620 7.9E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 SUPERFAMILY SSF52172 506 626 3.27E-32 T 12-10-2018 IPR011006 CheY-like superfamily R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Gene3D G3DSA:1.10.287.130 243 325 6.9E-15 T 12-10-2018 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 483 1.3E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 464 1.3E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 1.3E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Gene3D G3DSA:1.20.1480.50 156 242 3.5E-6 T 12-10-2018 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 315 5.0E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 SUPERFAMILY SSF47384 245 323 1.45E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_14085 90f23c18560a29e0bacc2d449f3452e0 631 SUPERFAMILY SSF55874 314 489 2.36E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00685 eec435925a2d2a116ff56e7abf506938 450 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 172 443 1.2E-110 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 R615_00685 eec435925a2d2a116ff56e7abf506938 450 SUPERFAMILY SSF52540 240 444 1.37E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00685 eec435925a2d2a116ff56e7abf506938 450 SMART SM00382 242 449 4.0E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_00685 eec435925a2d2a116ff56e7abf506938 450 SMART SM00962 243 444 1.3E-122 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_00685 eec435925a2d2a116ff56e7abf506938 450 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 417 430 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_00685 eec435925a2d2a116ff56e7abf506938 450 SUPERFAMILY SSF47364 142 222 3.93E-22 T 12-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 R615_00685 eec435925a2d2a116ff56e7abf506938 450 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 171 444 63.359 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 R615_00685 eec435925a2d2a116ff56e7abf506938 450 SMART SM00963 147 228 3.2E-27 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_00685 eec435925a2d2a116ff56e7abf506938 450 Gene3D G3DSA:3.40.50.300 243 432 2.4E-116 T 12-10-2018 R615_00685 eec435925a2d2a116ff56e7abf506938 450 Pfam PF00448 SRP54-type protein, GTPase domain 244 443 9.6E-77 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_00685 eec435925a2d2a116ff56e7abf506938 450 Pfam PF02881 SRP54-type protein, helical bundle domain 159 224 2.5E-14 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_00685 eec435925a2d2a116ff56e7abf506938 450 Gene3D G3DSA:1.20.120.140 144 442 2.4E-116 T 12-10-2018 R615_15150 ac16c91746eda3ed1657510173c03f5e 252 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site R615_15150 ac16c91746eda3ed1657510173c03f5e 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 98 209 5.1E-22 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_10500 c8d094642d6afd71f181a148a551352b 730 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 8 450 1.2E-186 T 12-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 R615_10500 c8d094642d6afd71f181a148a551352b 730 Gene3D G3DSA:3.40.50.11540 145 296 5.9E-17 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_10500 c8d094642d6afd71f181a148a551352b 730 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 717 189.52 T 12-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 R615_10500 c8d094642d6afd71f181a148a551352b 730 Pfam PF13237 4Fe-4S dicluster domain 380 431 2.6E-9 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_10500 c8d094642d6afd71f181a148a551352b 730 Gene3D G3DSA:1.10.1060.10 367 447 3.2E-12 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 R615_10500 c8d094642d6afd71f181a148a551352b 730 Pfam PF13375 RnfC Barrel sandwich hybrid domain 9 109 1.7E-39 T 12-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain R615_10500 c8d094642d6afd71f181a148a551352b 730 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 140 287 5.5E-52 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_10500 c8d094642d6afd71f181a148a551352b 730 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 420 431 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_10500 c8d094642d6afd71f181a148a551352b 730 SUPERFAMILY SSF46548 339 450 1.96E-22 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 R615_10500 c8d094642d6afd71f181a148a551352b 730 SUPERFAMILY SSF142019 89 307 7.32E-63 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_10500 c8d094642d6afd71f181a148a551352b 730 Pfam PF10531 SLBB domain 301 349 1.1E-10 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_07100 19222ae823810319b8d4112c6c446508 581 SUPERFAMILY SSF51445 57 534 1.31E-89 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_07100 19222ae823810319b8d4112c6c446508 581 Gene3D G3DSA:3.20.20.80 64 468 2.2E-159 T 12-10-2018 R615_07100 19222ae823810319b8d4112c6c446508 581 SMART SM00642 61 492 5.3E-6 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 R615_07100 19222ae823810319b8d4112c6c446508 581 Pfam PF00128 Alpha amylase, catalytic domain 94 290 3.0E-18 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 R615_07100 19222ae823810319b8d4112c6c446508 581 PIRSF PIRSF003059 7 579 3.0E-180 T 12-10-2018 IPR016377 Sucrose/Glucosylglycerate phosphorylase-related R615_07100 19222ae823810319b8d4112c6c446508 581 Gene3D G3DSA:3.90.400.10 146 219 2.2E-159 T 12-10-2018 R615_01905 bec36b0705ccd4c3fb34982fcab9567d 208 SUPERFAMILY SSF47616 81 207 6.4E-27 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_01905 bec36b0705ccd4c3fb34982fcab9567d 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 13 86 3.0E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_01905 bec36b0705ccd4c3fb34982fcab9567d 208 Gene3D G3DSA:1.20.1050.10 88 192 1.1E-81 T 12-10-2018 R615_01905 bec36b0705ccd4c3fb34982fcab9567d 208 Pfam PF00043 Glutathione S-transferase, C-terminal domain 103 193 1.3E-8 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal R615_01905 bec36b0705ccd4c3fb34982fcab9567d 208 SUPERFAMILY SSF52833 9 108 1.78E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_01905 bec36b0705ccd4c3fb34982fcab9567d 208 Gene3D G3DSA:3.40.30.10 10 201 1.1E-81 T 12-10-2018 R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 Pfam PF13620 Carboxypeptidase regulatory-like domain 126 195 8.3E-12 T 12-10-2018 R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 Pfam PF00593 TonB dependent receptor 528 992 1.0E-26 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 Pfam PF07715 TonB-dependent Receptor Plug Domain 222 321 1.8E-6 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 Gene3D G3DSA:2.40.170.20 392 994 3.1E-35 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 Gene3D G3DSA:2.170.130.10 201 327 3.6E-6 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 SUPERFAMILY SSF49464 119 195 1.7E-12 T 12-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 Gene3D G3DSA:2.60.40.1120 119 196 4.5E-13 T 12-10-2018 R615_12890 f247c71cde58e717665f9e2b5bbf8bed 994 SUPERFAMILY SSF56935 204 994 2.12E-67 T 12-10-2018 R615_12450 4f13ffcb14b44a237fd3bfbdbb2975a1 256 Gene3D G3DSA:2.40.70.10 108 237 1.8E-40 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily R615_12450 4f13ffcb14b44a237fd3bfbdbb2975a1 256 SUPERFAMILY SSF50630 111 244 4.81E-40 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily R615_12450 4f13ffcb14b44a237fd3bfbdbb2975a1 256 Pfam PF05618 Putative ATP-dependant zinc protease 111 246 1.1E-38 T 12-10-2018 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 Gene3D G3DSA:3.40.50.1400 168 306 3.7E-93 T 12-10-2018 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 Gene3D G3DSA:3.40.50.1400 7 323 3.7E-93 T 12-10-2018 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 Pfam PF00762 Ferrochelatase 7 324 3.5E-108 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 Hamap MF_00323 Ferrochelatase [hemH]. 4 325 36.683 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 TIGRFAM TIGR00109 hemH: ferrochelatase 2 324 1.6E-95 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 SUPERFAMILY SSF53800 3 329 2.78E-103 T 12-10-2018 R615_12980 636fd859190dc7896c3ef88a45faa8cc 331 ProSitePatterns PS00534 Ferrochelatase signature. 194 212 - T 12-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 152 23.865 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 SUPERFAMILY SSF54364 1 60 1.31E-17 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 Gene3D G3DSA:3.30.110.10 58 153 1.4E-36 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 152 1.0E-55 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 65 149 2.7E-37 T 12-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 Gene3D G3DSA:3.10.20.80 1 57 2.2E-19 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 SUPERFAMILY SSF55200 65 153 4.71E-33 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 R615_06715 4677f5d12c736e3e0dd5ca180f90480f 153 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 58 5.8E-19 T 12-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 R615_16855 04b968900723fb0835261dddc89e23c2 760 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 676 688 5.9E-23 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 623 638 5.9E-23 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 640 655 5.9E-23 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 470 489 5.9E-23 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 Gene3D G3DSA:3.30.450.40 1 164 1.3E-49 T 12-10-2018 IPR029016 GAF-like domain superfamily R615_16855 04b968900723fb0835261dddc89e23c2 760 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 181 739 1.4E-133 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 R615_16855 04b968900723fb0835261dddc89e23c2 760 Gene3D G3DSA:1.10.274.10 198 322 7.7E-60 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 R615_16855 04b968900723fb0835261dddc89e23c2 760 Gene3D G3DSA:3.50.30.10 181 410 7.7E-60 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 Pfam PF01590 GAF domain 17 152 3.5E-15 T 12-10-2018 IPR003018 GAF domain GO:0005515 R615_16855 04b968900723fb0835261dddc89e23c2 760 SMART SM00065 17 164 2.3E-27 T 12-10-2018 IPR003018 GAF domain GO:0005515 R615_16855 04b968900723fb0835261dddc89e23c2 760 Gene3D G3DSA:3.20.20.60 411 750 2.5E-103 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 623 641 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 R615_16855 04b968900723fb0835261dddc89e23c2 760 SUPERFAMILY SSF55781 2 158 1.16E-32 T 12-10-2018 R615_16855 04b968900723fb0835261dddc89e23c2 760 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 432 716 2.9E-96 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 R615_16855 04b968900723fb0835261dddc89e23c2 760 Pfam PF05524 PEP-utilising enzyme, N-terminal 181 302 2.3E-22 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 R615_16855 04b968900723fb0835261dddc89e23c2 760 SUPERFAMILY SSF47831 207 319 1.83E-28 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 R615_16855 04b968900723fb0835261dddc89e23c2 760 SUPERFAMILY SSF51621 431 716 6.81E-100 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 R615_16855 04b968900723fb0835261dddc89e23c2 760 SUPERFAMILY SSF52009 301 423 8.11E-29 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 R615_16855 04b968900723fb0835261dddc89e23c2 760 Pfam PF00391 PEP-utilising enzyme, mobile domain 330 402 1.0E-18 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 R615_12770 e1eee76698d8550297962d8075a7d14d 229 SMART SM00535 20 148 9.5E-52 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 R615_12770 e1eee76698d8550297962d8075a7d14d 229 Pfam PF00035 Double-stranded RNA binding motif 155 222 7.7E-11 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain R615_12770 e1eee76698d8550297962d8075a7d14d 229 SUPERFAMILY SSF69065 4 158 2.27E-48 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 R615_12770 e1eee76698d8550297962d8075a7d14d 229 Gene3D G3DSA:3.30.160.20 151 229 8.3E-18 T 12-10-2018 R615_12770 e1eee76698d8550297962d8075a7d14d 229 SUPERFAMILY SSF54768 108 224 8.43E-25 T 12-10-2018 R615_12770 e1eee76698d8550297962d8075a7d14d 229 SMART SM00358 155 223 8.7E-17 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain R615_12770 e1eee76698d8550297962d8075a7d14d 229 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 R615_12770 e1eee76698d8550297962d8075a7d14d 229 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 29.403 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 R615_12770 e1eee76698d8550297962d8075a7d14d 229 Pfam PF14622 Ribonuclease-III-like 18 141 1.4E-33 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 R615_12770 e1eee76698d8550297962d8075a7d14d 229 Gene3D G3DSA:1.10.1520.10 2 146 7.0E-43 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 R615_12770 e1eee76698d8550297962d8075a7d14d 229 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 220 2.1E-70 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 R615_07030 57e61d73db649d976a01740da096bddd 256 Gene3D G3DSA:3.60.15.10 6 246 2.5E-31 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_07030 57e61d73db649d976a01740da096bddd 256 Pfam PF12706 Beta-lactamase superfamily domain 24 202 6.2E-14 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_07030 57e61d73db649d976a01740da096bddd 256 SMART SM00849 11 188 1.0E-4 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_07030 57e61d73db649d976a01740da096bddd 256 SUPERFAMILY SSF56281 6 222 3.14E-36 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_13910 754f183700ee670ba379b01d9fa39e5b 176 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 6 174 3.1E-58 T 12-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 R615_13910 754f183700ee670ba379b01d9fa39e5b 176 Gene3D G3DSA:3.40.50.300 5 176 1.8E-56 T 12-10-2018 R615_13910 754f183700ee670ba379b01d9fa39e5b 176 SUPERFAMILY SSF52540 6 176 4.56E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13910 754f183700ee670ba379b01d9fa39e5b 176 PIRSF PIRSF006135 3 176 6.2E-54 T 12-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 R615_01720 4ee0b57c4fd2a4bc315d90f59413b90c 494 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 64 491 4.1E-192 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath R615_01720 4ee0b57c4fd2a4bc315d90f59413b90c 494 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 491 1.1E-209 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath R615_14320 a2b4dcf554432ffc60f86e7dbbb23e66 253 Pfam PF11008 Protein of unknown function (DUF2846) 22 164 1.7E-37 T 12-10-2018 IPR022548 Domain of unknown function DUF2846 R615_11270 9782469d1a562ee6759725c213026f70 472 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 234 409 5.0E-4 T 12-10-2018 R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 378 397 3.1E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 305 316 3.1E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 432 452 3.1E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 352 368 3.1E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 235 252 3.1E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 399 416 3.1E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 240 464 4.1E-47 T 12-10-2018 R615_11270 9782469d1a562ee6759725c213026f70 472 Gene3D G3DSA:3.40.50.720 24 227 3.2E-48 T 12-10-2018 R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 305 316 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 358 366 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 378 397 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11270 9782469d1a562ee6759725c213026f70 472 Gene3D G3DSA:3.40.50.720 229 471 4.8E-61 T 12-10-2018 R615_11270 9782469d1a562ee6759725c213026f70 472 SUPERFAMILY SSF51735 230 466 2.43E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_12820 bf1c113f6128959b56ea169d78813d92 88 SUPERFAMILY SSF109910 3 82 1.06E-22 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily R615_12820 bf1c113f6128959b56ea169d78813d92 88 Pfam PF03937 Flavinator of succinate dehydrogenase 11 78 8.4E-24 T 12-10-2018 IPR005631 Flavinator of succinate dehydrogenase R615_12820 bf1c113f6128959b56ea169d78813d92 88 Gene3D G3DSA:1.10.150.250 3 87 1.3E-27 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Gene3D G3DSA:3.40.120.10 2 153 8.1E-48 T 12-10-2018 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Gene3D G3DSA:3.30.310.50 368 444 1.2E-23 T 12-10-2018 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Gene3D G3DSA:3.40.120.10 172 359 1.8E-62 T 12-10-2018 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Gene3D G3DSA:3.40.120.10 255 337 1.8E-62 T 12-10-2018 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 SUPERFAMILY SSF53738 155 254 3.26E-27 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 SUPERFAMILY SSF53738 2 179 2.9E-48 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 SUPERFAMILY SSF55957 356 443 1.07E-21 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 442 46.803 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 252 1.3E-17 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 2.7E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 2.7E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 2.7E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 SUPERFAMILY SSF53738 256 363 1.29E-28 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 131 5.8E-43 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 371 439 3.8E-13 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 362 7.3E-29 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 440 8.9E-187 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04020 e89485dd8ccd8ccc744ce077cc9bc3aa 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_15280 5c9a302302658648dfa62184e4440d2f 409 Gene3D G3DSA:3.40.50.720 14 312 9.6E-106 T 12-10-2018 R615_15280 5c9a302302658648dfa62184e4440d2f 409 Gene3D G3DSA:3.40.50.720 109 297 9.6E-106 T 12-10-2018 R615_15280 5c9a302302658648dfa62184e4440d2f 409 SUPERFAMILY SSF51735 108 295 4.11E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_15280 5c9a302302658648dfa62184e4440d2f 409 SUPERFAMILY SSF55021 334 408 4.96E-17 T 12-10-2018 R615_15280 5c9a302302658648dfa62184e4440d2f 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site R615_15280 5c9a302302658648dfa62184e4440d2f 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site R615_15280 5c9a302302658648dfa62184e4440d2f 409 SUPERFAMILY SSF52283 7 135 9.57E-51 T 12-10-2018 R615_15280 5c9a302302658648dfa62184e4440d2f 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 1.3E-36 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 R615_15280 5c9a302302658648dfa62184e4440d2f 409 Gene3D G3DSA:3.30.70.260 328 408 2.3E-31 T 12-10-2018 R615_15280 5c9a302302658648dfa62184e4440d2f 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 R615_15280 5c9a302302658648dfa62184e4440d2f 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 4.0E-51 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 405 496 4.8E-29 T 12-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 394 5.1E-96 T 12-10-2018 IPR000523 Magnesium chelatase ChlI domain R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 Gene3D G3DSA:3.30.230.10 17 167 3.2E-7 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 9.8E-46 T 12-10-2018 R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 Gene3D G3DSA:3.40.50.300 190 499 1.5E-55 T 12-10-2018 R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 496 2.3E-198 T 12-10-2018 IPR004482 Mg chelatase-related protein R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 SMART SM00382 211 394 5.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 SUPERFAMILY SSF54211 10 169 3.07E-29 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 SUPERFAMILY SSF52540 191 503 1.29E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 210 225 6.3E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 343 355 6.3E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 291 305 6.3E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 R615_00235 b39c477fbb3ea6ecc4f2dca7c52d13ef 505 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 319 332 6.3E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 R615_12470 aee234582d0915b802382241709338cb 468 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 94 401 1.4E-18 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme R615_12470 aee234582d0915b802382241709338cb 468 Gene3D G3DSA:3.40.50.1100 97 433 7.0E-144 T 12-10-2018 R615_12470 aee234582d0915b802382241709338cb 468 SUPERFAMILY SSF53686 1 462 2.02E-154 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme R615_12470 aee234582d0915b802382241709338cb 468 Gene3D G3DSA:3.90.1380.10 1 87 3.5E-28 T 12-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily R615_12470 aee234582d0915b802382241709338cb 468 TIGRFAM TIGR00260 thrC: threonine synthase 73 424 7.4E-82 T 12-10-2018 IPR004450 Threonine synthase-like R615_12470 aee234582d0915b802382241709338cb 468 Gene3D G3DSA:3.40.50.1100 109 446 7.0E-144 T 12-10-2018 R615_12470 aee234582d0915b802382241709338cb 468 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 103 117 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 R615_12470 aee234582d0915b802382241709338cb 468 Pfam PF14821 Threonine synthase N terminus 3 81 1.6E-27 T 12-10-2018 IPR029144 Threonine synthase, N-terminal R615_05480 5f1063130980981515ba686a07b99921 255 Gene3D G3DSA:3.40.1180.10 2 243 3.1E-91 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 R615_05480 5f1063130980981515ba686a07b99921 255 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 12-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 R615_05480 5f1063130980981515ba686a07b99921 255 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.304 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 R615_05480 5f1063130980981515ba686a07b99921 255 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 1.1E-77 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 R615_05480 5f1063130980981515ba686a07b99921 255 SUPERFAMILY SSF64005 13 237 5.36E-83 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 R615_05480 5f1063130980981515ba686a07b99921 255 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 15 242 1.7E-90 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 R615_13875 95c664d64953478c6682f5e653c6f953 895 SUPERFAMILY SSF52518 479 706 1.53E-97 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_13875 95c664d64953478c6682f5e653c6f953 895 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 108 301 2.0E-8 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_13875 95c664d64953478c6682f5e653c6f953 895 SUPERFAMILY SSF52518 59 475 1.16E-132 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_13875 95c664d64953478c6682f5e653c6f953 895 Gene3D G3DSA:3.40.50.920 712 895 3.5E-57 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 R615_13875 95c664d64953478c6682f5e653c6f953 895 PIRSF PIRSF000156 1 895 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 R615_13875 95c664d64953478c6682f5e653c6f953 895 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 8 894 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 R615_13875 95c664d64953478c6682f5e653c6f953 895 Gene3D G3DSA:3.40.50.970 478 711 1.1E-108 T 12-10-2018 R615_13875 95c664d64953478c6682f5e653c6f953 895 SUPERFAMILY SSF52922 707 894 8.03E-46 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 R615_13875 95c664d64953478c6682f5e653c6f953 895 Gene3D G3DSA:3.40.50.970 58 477 3.3E-128 T 12-10-2018 R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 SUPERFAMILY SSF52540 309 509 2.07E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 552 5.4E-290 T 12-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 Pfam PF00005 ABC transporter 340 473 1.2E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 Gene3D G3DSA:3.40.50.300 286 552 4.7E-73 T 12-10-2018 R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 Pfam PF12848 ABC transporter 230 302 1.4E-12 T 12-10-2018 IPR032781 ABC-transporter extension domain R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 SMART SM00382 348 526 2.9E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 SMART SM00382 31 236 6.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 Gene3D G3DSA:3.40.50.300 1 285 1.7E-81 T 12-10-2018 R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 SUPERFAMILY SSF52540 10 244 9.13E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_14735 3720f70fa282aa1a1daa7cd3fa38b2ff 553 Pfam PF00005 ABC transporter 22 191 1.6E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_05830 c56778d61b21c4338974e0d94b9fb4ec 540 Gene3D G3DSA:3.50.50.60 23 98 2.5E-19 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_05830 c56778d61b21c4338974e0d94b9fb4ec 540 Gene3D G3DSA:3.50.50.60 196 337 2.7E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_05830 c56778d61b21c4338974e0d94b9fb4ec 540 Pfam PF13450 NAD(P)-binding Rossmann-like domain 27 94 2.1E-13 T 12-10-2018 R615_05830 c56778d61b21c4338974e0d94b9fb4ec 540 SUPERFAMILY SSF51905 22 520 1.3E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 PRINTS PR01650 Bacterial translocase SecE signature 42 63 2.8E-24 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 PRINTS PR01650 Bacterial translocase SecE signature 107 122 2.8E-24 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 PRINTS PR01650 Bacterial translocase SecE signature 63 83 2.8E-24 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 PRINTS PR01650 Bacterial translocase SecE signature 87 107 2.8E-24 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 122 6.4E-17 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 120 3.2E-17 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 Hamap MF_00422 Protein translocase subunit SecE [secE]. 64 119 12.335 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16245 8be6cccca1d12580f92fa52ed854fac1 122 Gene3D G3DSA:1.20.5.1030 64 120 5.7E-16 T 12-10-2018 IPR038379 SecE superfamily R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 Gene3D G3DSA:3.40.50.300 2 280 1.2E-56 T 12-10-2018 R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 Gene3D G3DSA:3.40.50.300 282 531 1.3E-53 T 12-10-2018 R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 Pfam PF12848 ABC transporter 224 309 1.1E-21 T 12-10-2018 IPR032781 ABC-transporter extension domain R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 Pfam PF00005 ABC transporter 337 468 1.3E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 SUPERFAMILY SSF52540 6 237 2.7E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 SUPERFAMILY SSF52540 296 524 1.94E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 SMART SM00382 345 513 8.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 SMART SM00382 26 238 1.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_13625 1f20e43ddbd134613a651e40e0a624aa 531 Pfam PF00005 ABC transporter 18 184 2.6E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_16025 829af87546e186bcbf4018ae948cc995 1236 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 812 973 5.2E-28 T 12-10-2018 IPR000160 GGDEF domain R615_16025 829af87546e186bcbf4018ae948cc995 1236 SUPERFAMILY SSF141371 4 95 5.1E-7 T 12-10-2018 R615_16025 829af87546e186bcbf4018ae948cc995 1236 Gene3D G3DSA:3.30.70.270 805 975 1.7E-41 T 12-10-2018 R615_16025 829af87546e186bcbf4018ae948cc995 1236 Pfam PF07793 Protein of unknown function (DUF1631) 143 806 1.7E-65 T 12-10-2018 IPR012434 Protein of unknown function DUF1631 R615_16025 829af87546e186bcbf4018ae948cc995 1236 Pfam PF00563 EAL domain 994 1221 3.9E-42 T 12-10-2018 IPR001633 EAL domain R615_16025 829af87546e186bcbf4018ae948cc995 1236 Gene3D G3DSA:3.20.20.450 976 1223 5.7E-55 T 12-10-2018 IPR035919 EAL domain superfamily R615_16025 829af87546e186bcbf4018ae948cc995 1236 SMART SM00052 987 1229 3.2E-33 T 12-10-2018 IPR001633 EAL domain R615_16025 829af87546e186bcbf4018ae948cc995 1236 SUPERFAMILY SSF141868 993 1221 4.71E-46 T 12-10-2018 IPR035919 EAL domain superfamily R615_16025 829af87546e186bcbf4018ae948cc995 1236 Pfam PF00990 Diguanylate cyclase, GGDEF domain 815 970 3.0E-30 T 12-10-2018 IPR000160 GGDEF domain R615_16025 829af87546e186bcbf4018ae948cc995 1236 SMART SM00267 804 975 1.8E-37 T 12-10-2018 IPR000160 GGDEF domain R615_16025 829af87546e186bcbf4018ae948cc995 1236 SUPERFAMILY SSF55073 820 976 8.63E-35 T 12-10-2018 IPR029787 Nucleotide cyclase R615_16025 829af87546e186bcbf4018ae948cc995 1236 Gene3D G3DSA:2.40.10.220 2 103 4.3E-6 T 12-10-2018 R615_13915 c685b35812761b9c42ab7494f5db8488 114 Pfam PF07238 PilZ domain 9 112 1.4E-6 T 12-10-2018 IPR009875 PilZ domain GO:0035438 R615_13915 c685b35812761b9c42ab7494f5db8488 114 SUPERFAMILY SSF141371 5 98 5.49E-6 T 12-10-2018 R615_05590 6542d746aca4b0f7d0873da12d50b2a8 346 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 21 338 1.1E-109 T 12-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 R615_05590 6542d746aca4b0f7d0873da12d50b2a8 346 Pfam PF00962 Adenosine/AMP deaminase 21 337 1.0E-68 T 12-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 R615_05590 6542d746aca4b0f7d0873da12d50b2a8 346 SUPERFAMILY SSF51556 17 340 6.18E-90 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_05590 6542d746aca4b0f7d0873da12d50b2a8 346 Hamap MF_01962 Adenine deaminase. 17 329 84.668 T 12-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 R615_05590 6542d746aca4b0f7d0873da12d50b2a8 346 Gene3D G3DSA:3.20.20.140 10 344 7.2E-104 T 12-10-2018 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 SUPERFAMILY SSF51206 13 138 4.84E-34 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 Pfam PF00325 Bacterial regulatory proteins, crp family 168 199 3.9E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 Gene3D G3DSA:1.10.10.10 141 209 7.6E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 SMART SM00100 3 124 1.8E-22 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 Pfam PF00027 Cyclic nucleotide-binding domain 23 111 1.0E-23 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 SMART SM00419 162 210 7.8E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00103 cAMP-dependent protein kinase signature 84 95 8.6E-7 T 12-10-2018 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00103 cAMP-dependent protein kinase signature 143 155 8.6E-7 T 12-10-2018 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00103 cAMP-dependent protein kinase signature 40 54 8.6E-7 T 12-10-2018 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00103 cAMP-dependent protein kinase signature 70 79 8.6E-7 T 12-10-2018 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00103 cAMP-dependent protein kinase signature 25 39 8.6E-7 T 12-10-2018 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 Gene3D G3DSA:2.60.120.10 12 140 8.9E-45 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 SUPERFAMILY SSF46785 141 209 6.07E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 184 199 1.9E-8 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 168 184 1.9E-8 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 72 91 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site R615_14145 dd89c7b2b5ddc4102c6fe00f14f2f572 212 ProSitePatterns PS00042 Crp-type HTH domain signature. 170 193 - T 12-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 R615_08130 a2beca3b5ab772a571b6d59066181b5e 303 SUPERFAMILY SSF55729 4 143 1.38E-34 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_08130 a2beca3b5ab772a571b6d59066181b5e 303 Gene3D G3DSA:3.40.630.30 5 137 2.9E-35 T 12-10-2018 R615_08130 a2beca3b5ab772a571b6d59066181b5e 303 Pfam PF13673 Acetyltransferase (GNAT) domain 21 137 2.6E-18 T 12-10-2018 IPR000182 GNAT domain R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 Gene3D G3DSA:3.40.640.10 51 287 7.5E-128 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 Gene3D G3DSA:3.90.1150.10 34 376 7.5E-128 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 235 244 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 SUPERFAMILY SSF53383 3 385 9.47E-102 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 Pfam PF00155 Aminotransferase class I and II 40 379 8.8E-55 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 19 379 7.3E-141 T 12-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 R615_13490 2c6a2d13c402b46608e7bf300b79a7ca 397 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 383 46.682 T 12-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 R615_16225 1ded463219963e60a04c60cf8b557c06 164 Gene3D G3DSA:3.30.70.1730 2 124 6.3E-34 T 12-10-2018 R615_16225 1ded463219963e60a04c60cf8b557c06 164 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 12-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16225 1ded463219963e60a04c60cf8b557c06 164 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 159 25.273 T 12-10-2018 IPR022973 Ribosomal protein L10 R615_16225 1ded463219963e60a04c60cf8b557c06 164 SUPERFAMILY SSF160369 5 159 1.03E-46 T 12-10-2018 R615_16225 1ded463219963e60a04c60cf8b557c06 164 Pfam PF00466 Ribosomal protein L10 6 101 4.8E-26 T 12-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 12-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 467 8.5E-204 T 12-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 13 94 3.2E-29 T 12-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 385 397 - T 12-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 Gene3D G3DSA:3.10.20.70 1 103 7.5E-39 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 258 273 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 SUPERFAMILY SSF55931 101 467 1.96E-136 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 SMART SM01230 101 378 4.5E-144 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 SUPERFAMILY SSF54368 2 99 1.96E-35 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 Pfam PF00120 Glutamine synthetase, catalytic domain 101 465 4.4E-135 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_16940 bab6e3839b1192cd552bdf0f298c0f19 468 Gene3D G3DSA:3.30.590.10 104 456 2.4E-141 T 12-10-2018 R615_02590 884f58188fafb30258d7facdd670251d 334 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 37 321 2.3E-108 T 12-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 R615_02590 884f58188fafb30258d7facdd670251d 334 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 9 321 6.5E-131 T 12-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 R615_02590 884f58188fafb30258d7facdd670251d 334 Gene3D G3DSA:3.40.50.10470 134 332 1.6E-65 T 12-10-2018 R615_02590 884f58188fafb30258d7facdd670251d 334 Pfam PF01008 Initiation factor 2 subunit family 50 320 4.4E-72 T 12-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 R615_02590 884f58188fafb30258d7facdd670251d 334 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 332 39.752 T 12-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 R615_02590 884f58188fafb30258d7facdd670251d 334 Gene3D G3DSA:1.20.120.420 4 133 2.3E-39 T 12-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 R615_02590 884f58188fafb30258d7facdd670251d 334 SUPERFAMILY SSF100950 3 325 2.27E-112 T 12-10-2018 IPR037171 NagB/RpiA transferase-like R615_08705 ff2fee3705d1122338c0a89a2da4ebaf 103 Gene3D G3DSA:1.10.10.370 33 103 1.9E-25 T 12-10-2018 R615_08705 ff2fee3705d1122338c0a89a2da4ebaf 103 Pfam PF04358 DsrC like protein 2 103 1.3E-36 T 12-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE R615_08705 ff2fee3705d1122338c0a89a2da4ebaf 103 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 103 2.6E-39 T 12-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE R615_08705 ff2fee3705d1122338c0a89a2da4ebaf 103 SUPERFAMILY SSF69721 2 103 3.92E-33 T 12-10-2018 IPR025526 DsrC-like domain superfamily R615_08705 ff2fee3705d1122338c0a89a2da4ebaf 103 Gene3D G3DSA:3.30.1420.10 1 32 1.3E-9 T 12-10-2018 R615_08705 ff2fee3705d1122338c0a89a2da4ebaf 103 PIRSF PIRSF006223 1 103 4.6E-34 T 12-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE R615_13375 e268518377faec922b161a78ae774fe3 396 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 17 368 38.001 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 R615_13375 e268518377faec922b161a78ae774fe3 396 SMART SM00865 215 333 4.7E-58 T 12-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 Gene3D G3DSA:3.30.1330.20 229 340 6.9E-36 T 12-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 PRINTS PR00423 Cell division protein FtsZ signature 220 241 1.4E-52 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 PRINTS PR00423 Cell division protein FtsZ signature 134 155 1.4E-52 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 PRINTS PR00423 Cell division protein FtsZ signature 106 126 1.4E-52 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 PRINTS PR00423 Cell division protein FtsZ signature 197 219 1.4E-52 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 SUPERFAMILY SSF52490 22 213 4.32E-69 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 SUPERFAMILY SSF55307 212 328 2.29E-43 T 12-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 22 180 4.3E-39 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 17 336 4.5E-131 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 R615_13375 e268518377faec922b161a78ae774fe3 396 ProSitePatterns PS01134 FtsZ protein signature 1. 52 86 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 R615_13375 e268518377faec922b161a78ae774fe3 396 SMART SM00864 21 213 5.7E-114 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 Pfam PF12327 FtsZ family, C-terminal domain 230 324 5.3E-37 T 12-10-2018 IPR024757 Cell division protein FtsZ, C-terminal R615_13375 e268518377faec922b161a78ae774fe3 396 Gene3D G3DSA:3.40.50.1440 11 228 2.4E-80 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 R615_13375 e268518377faec922b161a78ae774fe3 396 ProSitePatterns PS01135 FtsZ protein signature 2. 105 126 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 R615_12070 0f4a092088766a713902875101d3b4b9 215 SMART SM00382 36 214 1.9E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_12070 0f4a092088766a713902875101d3b4b9 215 Gene3D G3DSA:3.40.50.300 3 211 1.7E-39 T 12-10-2018 R615_12070 0f4a092088766a713902875101d3b4b9 215 Pfam PF00005 ABC transporter 28 166 1.9E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_12070 0f4a092088766a713902875101d3b4b9 215 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 12 210 5.0E-71 T 12-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 R615_12070 0f4a092088766a713902875101d3b4b9 215 SUPERFAMILY SSF52540 8 197 6.15E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02650 20cfd8dea9a6942d62311598c6d6b7eb 390 SUPERFAMILY SSF53383 6 385 3.67E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_02650 20cfd8dea9a6942d62311598c6d6b7eb 390 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 230 243 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 R615_02650 20cfd8dea9a6942d62311598c6d6b7eb 390 Pfam PF00155 Aminotransferase class I and II 32 380 1.7E-53 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_02650 20cfd8dea9a6942d62311598c6d6b7eb 390 Gene3D G3DSA:3.40.640.10 3 389 5.3E-116 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 SUPERFAMILY SSF46626 85 161 6.4E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 Gene3D G3DSA:1.10.760.10 83 162 2.9E-30 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 PRINTS PR00607 Class IE cytochrome C signature 134 146 2.6E-15 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 PRINTS PR00607 Class IE cytochrome C signature 149 160 2.6E-15 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 PRINTS PR00607 Class IE cytochrome C signature 95 106 2.6E-15 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 PRINTS PR00607 Class IE cytochrome C signature 106 116 2.6E-15 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_01165 48259532f50c9024ac3ee43a239edf7c 163 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 84 159 1.7E-15 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 Gene3D G3DSA:3.40.50.720 2 245 6.6E-84 T 12-10-2018 R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 244 1.2E-65 T 12-10-2018 R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 184 3.4E-7 T 12-10-2018 R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 6.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 6.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 7 243 2.1E-98 T 12-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_09305 299ceb32c7b8d8caa6aab5ef06b8a3e6 246 SUPERFAMILY SSF51735 6 245 1.83E-84 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_05375 93481eee2190741d06358fd4b8d64377 388 Gene3D G3DSA:3.40.640.10 47 293 3.8E-138 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_05375 93481eee2190741d06358fd4b8d64377 388 PIRSF PIRSF000521 161 387 1.5E-37 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_05375 93481eee2190741d06358fd4b8d64377 388 PIRSF PIRSF000521 2 145 1.9E-13 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_05375 93481eee2190741d06358fd4b8d64377 388 Pfam PF00202 Aminotransferase class-III 10 384 6.6E-113 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_05375 93481eee2190741d06358fd4b8d64377 388 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 4 385 2.4E-142 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 R615_05375 93481eee2190741d06358fd4b8d64377 388 SUPERFAMILY SSF53383 4 385 4.17E-123 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_05375 93481eee2190741d06358fd4b8d64377 388 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 387 68.433 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 R615_05375 93481eee2190741d06358fd4b8d64377 388 Gene3D G3DSA:3.90.1150.10 12 377 3.8E-138 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_05375 93481eee2190741d06358fd4b8d64377 388 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 211 248 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_10465 cce5944c71a349db143a30c9f4325589 538 SUPERFAMILY SSF52540 4 249 5.54E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10465 cce5944c71a349db143a30c9f4325589 538 SMART SM00382 307 505 3.1E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_10465 cce5944c71a349db143a30c9f4325589 538 SMART SM00382 29 228 1.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_10465 cce5944c71a349db143a30c9f4325589 538 Pfam PF00005 ABC transporter 299 456 9.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_10465 cce5944c71a349db143a30c9f4325589 538 SUPERFAMILY SSF52540 271 527 1.21E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10465 cce5944c71a349db143a30c9f4325589 538 Pfam PF00005 ABC transporter 21 178 1.2E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_10465 cce5944c71a349db143a30c9f4325589 538 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_10465 cce5944c71a349db143a30c9f4325589 538 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 280 4.2E-6 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 R615_10465 cce5944c71a349db143a30c9f4325589 538 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 507 534 4.0E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 R615_10465 cce5944c71a349db143a30c9f4325589 538 Gene3D G3DSA:3.40.50.300 1 269 7.0E-83 T 12-10-2018 R615_10465 cce5944c71a349db143a30c9f4325589 538 Gene3D G3DSA:3.40.50.300 270 537 8.0E-88 T 12-10-2018 R615_10465 cce5944c71a349db143a30c9f4325589 538 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 SMART SM00487 265 500 1.2E-9 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 Pfam PF11867 Domain of unknown function (DUF3387) 721 1049 3.7E-113 T 12-10-2018 IPR021810 Protein of unknown function DUF3387 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 5 720 3.4E-190 T 12-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 Gene3D G3DSA:3.40.50.300 277 485 1.9E-45 T 12-10-2018 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 Pfam PF04851 Type III restriction enzyme, res subunit 297 467 2.1E-14 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 Gene3D G3DSA:3.90.1570.50 95 258 3.4E-29 T 12-10-2018 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 Gene3D G3DSA:3.40.50.300 486 727 3.7E-49 T 12-10-2018 R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 SUPERFAMILY SSF52540 227 522 2.45E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 SUPERFAMILY SSF52540 419 703 2.25E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06515 cb412e5cad7232b7867a450c48c6362a 1053 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 3 208 6.5E-42 T 12-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 SUPERFAMILY SSF55120 8 323 3.6E-89 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 7 325 26.948 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 15 186 2.6E-43 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 241 320 7.6E-5 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 79 92 - T 12-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 Gene3D G3DSA:3.30.2350.20 8 205 1.0E-52 T 12-10-2018 R615_02300 5cae6632be409fe9f458408553e1ee8b 341 Gene3D G3DSA:3.30.2340.10 230 281 4.3E-10 T 12-10-2018 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 Gene3D G3DSA:3.40.50.10300 189 403 2.3E-80 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 Pfam PF02441 Flavoprotein 8 183 9.0E-43 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 Gene3D G3DSA:3.40.50.1950 1 188 6.3E-56 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 370 1.1E-72 T 12-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 393 7.1E-144 T 12-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 SUPERFAMILY SSF52507 1 184 4.32E-60 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 R615_00940 2f4ec26b61846cc2d0f157a9750bad90 412 SUPERFAMILY SSF102645 188 401 1.27E-77 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 R615_14420 5f905cdcc175d9624c07e08c5a08c030 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 30.453 T 12-10-2018 IPR023065 Uncharacterised protein family ApaG R615_14420 5f905cdcc175d9624c07e08c5a08c030 125 Gene3D G3DSA:2.60.40.1470 1 125 9.7E-45 T 12-10-2018 IPR036767 ApaG domain superfamily R615_14420 5f905cdcc175d9624c07e08c5a08c030 125 Pfam PF04379 ApaG domain 18 102 7.3E-33 T 12-10-2018 IPR007474 ApaG domain R615_14420 5f905cdcc175d9624c07e08c5a08c030 125 SUPERFAMILY SSF110069 3 125 1.26E-47 T 12-10-2018 IPR036767 ApaG domain superfamily R615_07240 c7f8d466e8bc9de9e6ecf6a54941f215 260 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 61 101 - T 12-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 R615_07240 c7f8d466e8bc9de9e6ecf6a54941f215 260 SUPERFAMILY SSF53167 13 257 1.03E-74 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 R615_07240 c7f8d466e8bc9de9e6ecf6a54941f215 260 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 13 260 32.023 T 12-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 R615_07240 c7f8d466e8bc9de9e6ecf6a54941f215 260 Pfam PF01048 Phosphorylase superfamily 15 242 7.5E-39 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 R615_07240 c7f8d466e8bc9de9e6ecf6a54941f215 260 Gene3D G3DSA:3.40.50.1580 6 254 5.6E-74 T 12-10-2018 R615_12000 f9f8c6e33d27feaa1cbcda1177c6c075 1535 Pfam PF01345 Domain of unknown function DUF11 427 528 2.4E-6 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12000 f9f8c6e33d27feaa1cbcda1177c6c075 1535 Pfam PF01345 Domain of unknown function DUF11 959 1067 4.0E-7 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12000 f9f8c6e33d27feaa1cbcda1177c6c075 1535 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 971 1001 5.2E-9 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12000 f9f8c6e33d27feaa1cbcda1177c6c075 1535 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 428 465 2.0E-5 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12000 f9f8c6e33d27feaa1cbcda1177c6c075 1535 Pfam PF11824 Protein of unknown function (DUF3344) 22 272 3.5E-7 T 12-10-2018 IPR021779 Protein of unknown function DUF3344 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 SMART SM00857 3 135 4.9E-54 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 Pfam PF13384 Homeodomain-like domain 149 178 9.9E-7 T 12-10-2018 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 SUPERFAMILY SSF53041 1 135 2.75E-42 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 ProSitePatterns PS00398 Site-specific recombinases signature 2. 54 66 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 Pfam PF00239 Resolvase, N terminal domain 3 133 4.2E-42 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 Gene3D G3DSA:1.10.10.60 137 179 1.2E-7 T 12-10-2018 R615_13090 33f68ee5183e8816ae8a1ea8c57ffb6f 179 Gene3D G3DSA:3.40.50.1390 2 124 1.9E-44 T 12-10-2018 R615_03450 bda6850948dd63f4101d52e40706b2d7 226 SUPERFAMILY SSF54001 50 131 1.67E-5 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_03450 bda6850948dd63f4101d52e40706b2d7 226 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 62 175 1.4E-19 T 12-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted R615_03450 bda6850948dd63f4101d52e40706b2d7 226 Gene3D G3DSA:3.10.620.30 32 226 1.2E-74 T 12-10-2018 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 Gene3D G3DSA:3.40.50.1220 190 361 1.0E-60 T 12-10-2018 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 SUPERFAMILY SSF52518 4 179 2.08E-64 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 9.1E-45 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 545 3.0E-47 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 Gene3D G3DSA:3.40.50.970 1 181 4.4E-72 T 12-10-2018 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 SUPERFAMILY SSF52518 373 567 3.13E-65 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 SUPERFAMILY SSF52467 190 361 5.82E-64 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 Gene3D G3DSA:3.40.50.970 364 566 1.5E-62 T 12-10-2018 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 569 1.1E-254 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 R615_03390 3f75a5242c31db2b75c74038aa5213f6 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 2.4E-60 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 R615_01725 0ece16eb8559c1de497db8a214598be1 523 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 68 515 1.2E-140 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath R615_01725 0ece16eb8559c1de497db8a214598be1 523 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 85 515 4.2E-166 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath R615_03740 5bd3f32a76e4382a193216802ec0c27a 502 SUPERFAMILY SSF56399 370 481 2.16E-21 T 12-10-2018 R615_03740 5bd3f32a76e4382a193216802ec0c27a 502 Gene3D G3DSA:3.90.210.10 328 501 1.1E-27 T 12-10-2018 R615_03740 5bd3f32a76e4382a193216802ec0c27a 502 Pfam PF02917 Pertussis toxin, subunit 1 370 421 4.0E-5 T 12-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 R615_11035 521e0d1de528b1e61fdaf37e05c0aa33 223 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 20 221 4.2E-42 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 R615_11035 521e0d1de528b1e61fdaf37e05c0aa33 223 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 19 150 2.0E-15 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 R615_00690 14d1f8ac964e87211e0e3c099f562fdf 238 SMART SM00382 29 216 1.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_00690 14d1f8ac964e87211e0e3c099f562fdf 238 SUPERFAMILY SSF52540 3 219 5.8E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00690 14d1f8ac964e87211e0e3c099f562fdf 238 Pfam PF00005 ABC transporter 20 167 7.4E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_00690 14d1f8ac964e87211e0e3c099f562fdf 238 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 3 216 3.5E-85 T 12-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 R615_00690 14d1f8ac964e87211e0e3c099f562fdf 238 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_00690 14d1f8ac964e87211e0e3c099f562fdf 238 Gene3D G3DSA:3.40.50.300 1 233 1.0E-65 T 12-10-2018 R615_05725 c960485a8da699bebe97f11836078b62 406 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 402 52.732 T 12-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_05725 c960485a8da699bebe97f11836078b62 406 SUPERFAMILY SSF52402 5 208 4.41E-50 T 12-10-2018 R615_05725 c960485a8da699bebe97f11836078b62 406 Gene3D G3DSA:3.40.50.620 7 176 9.7E-158 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_05725 c960485a8da699bebe97f11836078b62 406 Pfam PF00764 Arginosuccinate synthase 8 396 3.0E-156 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_05725 c960485a8da699bebe97f11836078b62 406 SUPERFAMILY SSF69864 175 400 1.57E-95 T 12-10-2018 R615_05725 c960485a8da699bebe97f11836078b62 406 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 118 129 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_05725 c960485a8da699bebe97f11836078b62 406 Gene3D G3DSA:3.90.1260.10 65 357 9.7E-158 T 12-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_05725 c960485a8da699bebe97f11836078b62 406 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_05725 c960485a8da699bebe97f11836078b62 406 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 399 1.8E-142 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 R615_05725 c960485a8da699bebe97f11836078b62 406 Gene3D G3DSA:1.20.5.470 377 402 5.2E-11 T 12-10-2018 R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 SUPERFAMILY SSF55874 307 455 2.49E-25 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 453 1.3E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 1.3E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 1.3E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 Gene3D G3DSA:1.10.287.130 183 290 2.5E-6 T 12-10-2018 R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 454 1.1E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 SMART SM00387 338 456 1.7E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_17395 2c6bc58799e47b5bed61fa7703d81fd8 458 Gene3D G3DSA:3.30.565.10 302 455 1.1E-24 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_02695 404a1df9f086a9a453df5fe4f52ee3c7 113 Gene3D G3DSA:2.160.20.100 14 107 2.3E-17 T 12-10-2018 R615_02695 404a1df9f086a9a453df5fe4f52ee3c7 113 Pfam PF00805 Pentapeptide repeats (8 copies) 54 90 7.5E-11 T 12-10-2018 IPR001646 Pentapeptide repeat R615_02695 404a1df9f086a9a453df5fe4f52ee3c7 113 SUPERFAMILY SSF141571 32 92 6.15E-17 T 12-10-2018 R615_02695 404a1df9f086a9a453df5fe4f52ee3c7 113 PIRSF PIRSF029688 1 113 1.8E-42 T 12-10-2018 IPR016933 Pentapeptide repeat-containing uncharacterised conserved protein UCP029688 R615_00845 19cf11e6d5ae7b49b015ee3a787efc64 467 SUPERFAMILY SSF109604 179 456 4.08E-62 T 12-10-2018 R615_00845 19cf11e6d5ae7b49b015ee3a787efc64 467 Gene3D G3DSA:3.90.960.10 2 153 3.5E-24 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 R615_00845 19cf11e6d5ae7b49b015ee3a787efc64 467 PIRSF PIRSF036888 2 465 5.5E-135 T 12-10-2018 IPR014627 Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type R615_00845 19cf11e6d5ae7b49b015ee3a787efc64 467 Gene3D G3DSA:1.10.3210.10 159 464 4.5E-100 T 12-10-2018 R615_00845 19cf11e6d5ae7b49b015ee3a787efc64 467 SUPERFAMILY SSF55826 9 145 2.09E-6 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 R615_00845 19cf11e6d5ae7b49b015ee3a787efc64 467 Pfam PF08668 HDOD domain 194 394 1.0E-47 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_11110 be83cff828d5107a665ee86df197ee65 489 Gene3D G3DSA:3.40.630.10 173 489 8.4E-124 T 12-10-2018 R615_11110 be83cff828d5107a665ee86df197ee65 489 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 339 346 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 PRINTS PR00481 Cytosol aminopeptidase signature 313 334 1.4E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 PRINTS PR00481 Cytosol aminopeptidase signature 335 355 1.4E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 PRINTS PR00481 Cytosol aminopeptidase signature 364 379 1.4E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 PRINTS PR00481 Cytosol aminopeptidase signature 254 271 1.4E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 PRINTS PR00481 Cytosol aminopeptidase signature 276 297 1.4E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 Gene3D G3DSA:3.40.220.10 1 157 6.0E-32 T 12-10-2018 R615_11110 be83cff828d5107a665ee86df197ee65 489 SUPERFAMILY SSF52949 1 174 8.24E-29 T 12-10-2018 R615_11110 be83cff828d5107a665ee86df197ee65 489 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 142 7.4E-17 T 12-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 177 480 8.7E-116 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 R615_11110 be83cff828d5107a665ee86df197ee65 489 SUPERFAMILY SSF53187 174 486 2.64E-113 T 12-10-2018 R615_11110 be83cff828d5107a665ee86df197ee65 489 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 489 34.397 T 12-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 R615_04050 51198d0894df4e98566887c562274597 849 Gene3D G3DSA:2.40.30.10 751 848 6.9E-34 T 12-10-2018 R615_04050 51198d0894df4e98566887c562274597 849 SUPERFAMILY SSF46955 3 51 9.15E-8 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_04050 51198d0894df4e98566887c562274597 849 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 267 849 1.4E-255 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 R615_04050 51198d0894df4e98566887c562274597 849 SUPERFAMILY SSF52540 345 518 4.79E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04050 51198d0894df4e98566887c562274597 849 SUPERFAMILY SSF50447 751 847 4.32E-32 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_04050 51198d0894df4e98566887c562274597 849 ProSitePatterns PS01176 Initiation factor 2 signature. 800 822 - T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 R615_04050 51198d0894df4e98566887c562274597 849 Gene3D G3DSA:3.40.50.300 347 520 4.7E-69 T 12-10-2018 R615_04050 51198d0894df4e98566887c562274597 849 SUPERFAMILY SSF52156 630 756 5.1E-35 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily R615_04050 51198d0894df4e98566887c562274597 849 Gene3D G3DSA:3.40.50.10050 643 750 2.2E-36 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily R615_04050 51198d0894df4e98566887c562274597 849 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 353 508 8.5E-32 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_04050 51198d0894df4e98566887c562274597 849 Pfam PF11987 Translation-initiation factor 2 638 739 5.5E-35 T 12-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 R615_04050 51198d0894df4e98566887c562274597 849 Pfam PF00009 Elongation factor Tu GTP binding domain 354 510 9.9E-35 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_04050 51198d0894df4e98566887c562274597 849 Gene3D G3DSA:2.40.30.10 521 638 1.1E-39 T 12-10-2018 R615_04050 51198d0894df4e98566887c562274597 849 Gene3D G3DSA:3.30.56.50 2 51 1.5E-8 T 12-10-2018 R615_04050 51198d0894df4e98566887c562274597 849 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 97 3.7E-11 T 12-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial R615_04050 51198d0894df4e98566887c562274597 849 SUPERFAMILY SSF50447 523 605 9.77E-25 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_04050 51198d0894df4e98566887c562274597 849 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 273 322 6.0E-17 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal R615_04050 51198d0894df4e98566887c562274597 849 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 847 17.246 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 R615_01435 41251ed559da40420aa7b59b501452a7 435 Gene3D G3DSA:3.90.1150.10 11 423 1.6E-179 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_01435 41251ed559da40420aa7b59b501452a7 435 SUPERFAMILY SSF53383 5 430 1.17E-134 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_01435 41251ed559da40420aa7b59b501452a7 435 Pfam PF00202 Aminotransferase class-III 36 400 1.8E-76 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_01435 41251ed559da40420aa7b59b501452a7 435 Gene3D G3DSA:3.40.640.10 73 321 1.6E-179 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_01435 41251ed559da40420aa7b59b501452a7 435 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 274 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_01435 41251ed559da40420aa7b59b501452a7 435 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 8 430 1.0E-188 T 12-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 R615_01435 41251ed559da40420aa7b59b501452a7 435 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 7 431 103.644 T 12-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 R615_11615 23bd167ed3efd1771956150a2ac193d5 168 Gene3D G3DSA:3.40.630.30 2 166 3.4E-45 T 12-10-2018 R615_11615 23bd167ed3efd1771956150a2ac193d5 168 Pfam PF13508 Acetyltransferase (GNAT) domain 52 129 5.6E-11 T 12-10-2018 IPR000182 GNAT domain R615_11615 23bd167ed3efd1771956150a2ac193d5 168 SUPERFAMILY SSF55729 2 145 6.48E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 Pfam PF05681 Fumarate hydratase (Fumerase) 11 284 5.4E-100 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 Pfam PF05683 Fumarase C-terminus 288 488 6.4E-80 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 SUPERFAMILY SSF117457 315 487 1.7E-63 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 Gene3D G3DSA:3.20.130.10 304 488 2.8E-61 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 285 1.5E-63 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 PIRSF PIRSF001394 1 503 3.3E-217 T 12-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 R615_14315 16eb0c52ba5460bd4727d3fd6fb12f47 503 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 324 487 4.7E-50 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 R615_05515 1c17e40a28b462f5639f3d23761469d0 154 SUPERFAMILY SSF54637 3 147 2.79E-48 T 12-10-2018 IPR029069 HotDog domain superfamily R615_05515 1c17e40a28b462f5639f3d23761469d0 154 Gene3D G3DSA:3.10.129.10 1 151 6.2E-57 T 12-10-2018 R615_05515 1c17e40a28b462f5639f3d23761469d0 154 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 4 150 33.29 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 R615_05515 1c17e40a28b462f5639f3d23761469d0 154 Pfam PF07977 FabA-like domain 13 142 2.2E-37 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 R615_05515 1c17e40a28b462f5639f3d23761469d0 154 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 5 147 1.2E-57 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 R615_06560 0f92341e817954ab272078b607100109 286 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 25 270 7.5E-58 T 12-10-2018 R615_06560 0f92341e817954ab272078b607100109 286 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 17 248 8.5E-51 T 12-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 R615_06560 0f92341e817954ab272078b607100109 286 Gene3D G3DSA:3.40.190.10 106 219 3.0E-47 T 12-10-2018 R615_06560 0f92341e817954ab272078b607100109 286 TIGRFAM TIGR04553 ABC_peri_selen: putative selenate ABC transporter periplasmic binding protein 22 283 4.2E-115 T 12-10-2018 IPR030836 Putative ABC transporter periplasmic binding protein PhnD-like R615_06560 0f92341e817954ab272078b607100109 286 SUPERFAMILY SSF53850 43 233 8.7E-30 T 12-10-2018 R615_06560 0f92341e817954ab272078b607100109 286 Gene3D G3DSA:3.40.190.10 25 250 3.0E-47 T 12-10-2018 R615_12595 e3a680b70ff0af175d77df16408f36db 326 SUPERFAMILY SSF46689 219 270 3.07E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_12595 e3a680b70ff0af175d77df16408f36db 326 SUPERFAMILY SSF46689 272 322 6.48E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_12595 e3a680b70ff0af175d77df16408f36db 326 Pfam PF01965 DJ-1/PfpI family 43 181 1.1E-14 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 R615_12595 e3a680b70ff0af175d77df16408f36db 326 Gene3D G3DSA:3.40.50.880 1 208 2.4E-51 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_12595 e3a680b70ff0af175d77df16408f36db 326 SMART SM00342 236 319 6.0E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12595 e3a680b70ff0af175d77df16408f36db 326 Gene3D G3DSA:1.10.10.60 219 325 1.4E-30 T 12-10-2018 R615_12595 e3a680b70ff0af175d77df16408f36db 326 Pfam PF12833 Helix-turn-helix domain 242 321 6.1E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12595 e3a680b70ff0af175d77df16408f36db 326 SUPERFAMILY SSF52317 1 202 2.48E-43 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_07635 ef600c707a4f6630fee10f0d64b46820 103 Gene3D G3DSA:3.30.300.90 2 89 3.1E-28 T 12-10-2018 R615_07635 ef600c707a4f6630fee10f0d64b46820 103 Pfam PF01722 BolA-like protein 14 83 2.0E-27 T 12-10-2018 IPR002634 BolA protein R615_07635 ef600c707a4f6630fee10f0d64b46820 103 PIRSF PIRSF003113 1 98 8.1E-33 T 12-10-2018 IPR002634 BolA protein R615_07635 ef600c707a4f6630fee10f0d64b46820 103 SUPERFAMILY SSF82657 2 87 2.35E-28 T 12-10-2018 IPR036065 BolA-like superfamily R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 379 48.071 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 1.0E-50 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 Pfam PF00117 Glutamine amidotransferase class-I 198 373 1.3E-49 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 Gene3D G3DSA:3.40.50.880 156 379 1.4E-76 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 265 276 8.8E-11 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 350 363 8.8E-11 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 237 246 8.8E-11 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 234 248 7.9E-39 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 307 318 7.9E-39 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 265 281 7.9E-39 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 195 209 7.9E-39 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 299 7.9E-39 T 12-10-2018 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 SUPERFAMILY SSF52021 4 141 7.98E-56 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 SMART SM01097 3 133 4.0E-88 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 376 2.1E-146 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 Gene3D G3DSA:3.50.30.20 3 152 3.4E-58 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 R615_03965 68cd7fb9633f4a4778a06201e46717e0 382 SUPERFAMILY SSF52317 157 377 2.75E-63 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_07995 32041f8a57577835865ee3344dec3f90 134 Pfam PF01641 SelR domain 10 128 4.9E-56 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 R615_07995 32041f8a57577835865ee3344dec3f90 134 Gene3D G3DSA:2.170.150.20 1 132 6.8E-63 T 12-10-2018 R615_07995 32041f8a57577835865ee3344dec3f90 134 SUPERFAMILY SSF51316 6 131 4.81E-60 T 12-10-2018 IPR011057 Mss4-like superfamily R615_07995 32041f8a57577835865ee3344dec3f90 134 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 38.195 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 R615_07995 32041f8a57577835865ee3344dec3f90 134 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 130 5.6E-60 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 R615_04175 807a0d35be80c1106ef91d780e28a766 588 Pfam PF00682 HMGL-like 10 273 8.7E-59 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 R615_04175 807a0d35be80c1106ef91d780e28a766 588 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 10 584 3.7E-264 T 12-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 R615_04175 807a0d35be80c1106ef91d780e28a766 588 SUPERFAMILY SSF89000 300 463 1.29E-49 T 12-10-2018 R615_04175 807a0d35be80c1106ef91d780e28a766 588 Pfam PF00364 Biotin-requiring enzyme 523 587 1.3E-19 T 12-10-2018 IPR000089 Biotin/lipoyl attachment R615_04175 807a0d35be80c1106ef91d780e28a766 588 Pfam PF02436 Conserved carboxylase domain 295 482 7.0E-56 T 12-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 R615_04175 807a0d35be80c1106ef91d780e28a766 588 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 544 561 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_04175 807a0d35be80c1106ef91d780e28a766 588 Gene3D G3DSA:3.20.20.70 1 467 6.1E-169 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04175 807a0d35be80c1106ef91d780e28a766 588 Gene3D G3DSA:2.40.50.100 516 587 8.7E-25 T 12-10-2018 R615_04175 807a0d35be80c1106ef91d780e28a766 588 SUPERFAMILY SSF51230 515 587 8.77E-22 T 12-10-2018 IPR011053 Single hybrid motif R615_04175 807a0d35be80c1106ef91d780e28a766 588 SUPERFAMILY SSF51569 5 301 2.56E-88 T 12-10-2018 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 SUPERFAMILY SSF102886 11 317 1.26E-133 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PIRSF PIRSF000166 2 317 4.1E-126 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 Pfam PF01218 Coproporphyrinogen III oxidase 13 317 4.3E-130 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PRINTS PR00073 Coprogen oxidase signature 277 303 2.8E-70 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PRINTS PR00073 Coprogen oxidase signature 136 158 2.8E-70 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PRINTS PR00073 Coprogen oxidase signature 35 51 2.8E-70 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PRINTS PR00073 Coprogen oxidase signature 101 125 2.8E-70 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PRINTS PR00073 Coprogen oxidase signature 249 276 2.8E-70 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 PRINTS PR00073 Coprogen oxidase signature 173 202 2.8E-70 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 Gene3D G3DSA:3.40.1500.10 2 317 6.2E-133 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 7 292 56.835 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_00580 3998d4890318ce85b06fba9fea7c3117 317 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 177 201 - T 12-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 181 8.3E-9 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 SMART SM00283 280 541 3.0E-57 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 355 507 5.5E-41 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 Pfam PF00672 HAMP domain 212 261 1.6E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 7.7E-21 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 7.7E-21 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 301 330 7.7E-21 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 SUPERFAMILY SSF58104 233 541 4.84E-70 T 12-10-2018 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 SMART SM00304 211 265 1.1E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_02935 ecbaabbb549034c0cabcba99d6e92074 542 Gene3D G3DSA:1.10.287.950 211 542 3.3E-71 T 12-10-2018 R615_04360 ba16c5f666ad0aba6172125ef2454a2f 125 Pfam PF04126 Cyclophilin-like 4 121 7.5E-26 T 12-10-2018 IPR025658 Cyclophilin TM1367-like domain R615_04360 ba16c5f666ad0aba6172125ef2454a2f 125 Gene3D G3DSA:2.40.100.20 2 125 3.6E-33 T 12-10-2018 R615_04360 ba16c5f666ad0aba6172125ef2454a2f 125 SUPERFAMILY SSF50891 4 124 1.21E-20 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 Gene3D G3DSA:3.40.50.9100 1 150 7.7E-66 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 12-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 147 2.0E-48 T 12-10-2018 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 SUPERFAMILY SSF52304 3 146 3.4E-62 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 Pfam PF01220 Dehydroquinase class II 3 139 8.2E-62 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 3 143 6.7E-61 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 PIRSF PIRSF001399 1 147 1.4E-59 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_03445 ba4fc848cd98071672b8d6c9c09b340e 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 74.152 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 R615_06845 66649261c903002d569fae394a3b80f5 384 Pfam PF00529 HlyD membrane-fusion protein of T1SS 27 56 3.8E-6 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_06845 66649261c903002d569fae394a3b80f5 384 Gene3D G3DSA:2.40.30.170 45 301 3.1E-64 T 12-10-2018 R615_06845 66649261c903002d569fae394a3b80f5 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 372 1.0E-44 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_06845 66649261c903002d569fae394a3b80f5 384 Gene3D G3DSA:2.40.50.100 54 220 3.1E-64 T 12-10-2018 R615_06845 66649261c903002d569fae394a3b80f5 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 279 3.3E-13 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_06845 66649261c903002d569fae394a3b80f5 384 Gene3D G3DSA:2.40.420.20 302 356 3.1E-64 T 12-10-2018 R615_06845 66649261c903002d569fae394a3b80f5 384 Gene3D G3DSA:1.10.287.470 88 179 3.1E-64 T 12-10-2018 R615_06845 66649261c903002d569fae394a3b80f5 384 SUPERFAMILY SSF111369 47 236 1.96E-16 T 12-10-2018 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 SUPERFAMILY SSF48168 10 221 2.35E-71 T 12-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 SUPERFAMILY SSF51998 222 740 1.01E-162 T 12-10-2018 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 734 2.2E-175 T 12-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 7.9E-12 T 12-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 730 3.9E-119 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 Gene3D G3DSA:3.20.70.20 78 739 3.0E-156 T 12-10-2018 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 Pfam PF03477 ATP cone domain 6 92 3.3E-16 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 2.2E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 2.2E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 2.2E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 2.2E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 2.2E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05335 4034fb44c0e3915ce523823e1ea894b8 758 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 2.2E-36 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 SUPERFAMILY SSF55729 7 149 4.4E-12 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 369 389 - T 12-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 Pfam PF00795 Carbon-nitrogen hydrolase 224 446 2.2E-31 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 Gene3D G3DSA:3.40.630.30 2 221 6.2E-44 T 12-10-2018 R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 Gene3D G3DSA:3.60.110.10 222 507 3.8E-59 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 Pfam PF00583 Acetyltransferase (GNAT) family 46 136 1.5E-4 T 12-10-2018 IPR000182 GNAT domain R615_02535 b0d67c9e8b0340266a8b2cc0d1aa73b8 507 SUPERFAMILY SSF56317 221 487 1.16E-58 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_16365 5f4e5675489d558641363237b621df3b 435 Gene3D G3DSA:3.40.50.12780 20 340 1.7E-68 T 12-10-2018 R615_16365 5f4e5675489d558641363237b621df3b 435 Pfam PF00501 AMP-binding enzyme 174 303 2.4E-7 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_16365 5f4e5675489d558641363237b621df3b 435 SUPERFAMILY SSF56801 66 320 9.81E-19 T 12-10-2018 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 7 181 1.9E-76 T 12-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 61 77 - T 12-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 SUPERFAMILY SSF55620 3 182 8.89E-77 T 12-10-2018 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 Gene3D G3DSA:3.30.1130.10 52 182 3.3E-61 T 12-10-2018 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 182 35.638 T 12-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 109 119 - T 12-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 Pfam PF01227 GTP cyclohydrolase I 7 181 3.5E-75 T 12-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 R615_07575 7fd9cfedc8a9cc1e437e127538b87975 183 Gene3D G3DSA:1.10.286.10 1 51 2.0E-21 T 12-10-2018 R615_11080 56cc04160ca63b9d1a5c0298fdd2c99f 306 Gene3D G3DSA:3.30.200.20 27 111 1.5E-5 T 12-10-2018 R615_11080 56cc04160ca63b9d1a5c0298fdd2c99f 306 PIRSF PIRSF006221 22 306 4.0E-78 T 12-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 R615_11080 56cc04160ca63b9d1a5c0298fdd2c99f 306 Pfam PF03881 Fructosamine kinase 45 304 1.4E-84 T 12-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 R615_11080 56cc04160ca63b9d1a5c0298fdd2c99f 306 SUPERFAMILY SSF56112 49 301 2.04E-28 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_11080 56cc04160ca63b9d1a5c0298fdd2c99f 306 Gene3D G3DSA:3.90.1200.10 113 306 9.9E-64 T 12-10-2018 R615_15815 ebf360c9d00514c6c4ab5db46ef1af24 406 SUPERFAMILY SSF56436 168 405 7.4E-63 T 12-10-2018 IPR016187 C-type lectin fold R615_15815 ebf360c9d00514c6c4ab5db46ef1af24 406 Pfam PF12867 DinB superfamily 8 132 3.8E-7 T 12-10-2018 IPR024775 DinB-like domain R615_15815 ebf360c9d00514c6c4ab5db46ef1af24 406 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 6 404 1.8E-158 T 12-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 R615_15815 ebf360c9d00514c6c4ab5db46ef1af24 406 Pfam PF03781 Sulfatase-modifying factor enzyme 1 176 304 1.0E-21 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 R615_15815 ebf360c9d00514c6c4ab5db46ef1af24 406 Pfam PF03781 Sulfatase-modifying factor enzyme 1 323 405 3.8E-7 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 R615_15815 ebf360c9d00514c6c4ab5db46ef1af24 406 Gene3D G3DSA:3.90.1580.10 155 406 2.3E-34 T 12-10-2018 R615_03470 9321471a4903261f32a76dd15a570681 1210 Pfam PF02538 Hydantoinase B/oxoprolinase 694 1208 6.6E-185 T 12-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 R615_03470 9321471a4903261f32a76dd15a570681 1210 Pfam PF01968 Hydantoinase/oxoprolinase 210 496 4.4E-109 T 12-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 R615_03470 9321471a4903261f32a76dd15a570681 1210 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 15 190 5.7E-50 T 12-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 R615_06380 d2532f720d2c202861abf061303d4aa2 347 SUPERFAMILY SSF51735 1 345 2.45E-91 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06380 d2532f720d2c202861abf061303d4aa2 347 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 333 3.1E-56 T 12-10-2018 IPR016040 NAD(P)-binding domain R615_06380 d2532f720d2c202861abf061303d4aa2 347 Gene3D G3DSA:3.90.25.10 200 338 3.5E-138 T 12-10-2018 R615_06380 d2532f720d2c202861abf061303d4aa2 347 Gene3D G3DSA:3.40.50.720 4 283 3.5E-138 T 12-10-2018 R615_06380 d2532f720d2c202861abf061303d4aa2 347 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 4 344 3.6E-130 T 12-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 R615_06380 d2532f720d2c202861abf061303d4aa2 347 PRINTS PR01713 Nucleotide sugar epimerase signature 304 321 6.3E-5 T 12-10-2018 R615_06380 d2532f720d2c202861abf061303d4aa2 347 PRINTS PR01713 Nucleotide sugar epimerase signature 237 252 6.3E-5 T 12-10-2018 R615_06380 d2532f720d2c202861abf061303d4aa2 347 PRINTS PR01713 Nucleotide sugar epimerase signature 265 280 6.3E-5 T 12-10-2018 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 Pfam PF03168 Late embryogenesis abundant protein 53 148 8.1E-11 T 12-10-2018 IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 Pfam PF03168 Late embryogenesis abundant protein 180 258 1.4E-10 T 12-10-2018 IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 ProDom PD010978 LATE EMBRYOGENESIS ABUNDANT DESICCATION SIMILAR PROTECTANT PROTEINS RELATED EMBRYOGENESIS-ABUNDANT EMBRYOGENESIS-LIKE 29 157 4.0E-9 T 12-10-2018 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 SUPERFAMILY SSF117070 152 273 8.24E-18 T 12-10-2018 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 SMART SM00769 159 276 1.7E-7 T 12-10-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 SMART SM00769 32 150 2.4E-14 T 12-10-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 SUPERFAMILY SSF117070 8 158 5.23E-30 T 12-10-2018 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 Gene3D G3DSA:2.60.40.1820 25 157 2.7E-34 T 12-10-2018 R615_02660 f362575d310bf1586ff33be1ddbc2fef 281 Gene3D G3DSA:2.60.40.1820 158 274 1.2E-17 T 12-10-2018 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 227 2.0E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 Gene3D G3DSA:2.40.110.10 132 249 1.5E-35 T 12-10-2018 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 395 2.3E-40 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 SUPERFAMILY SSF47203 242 397 4.03E-37 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 Gene3D G3DSA:1.10.540.10 5 131 2.3E-6 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 SUPERFAMILY SSF56645 13 255 1.31E-45 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 353 372 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 R615_06890 535a7a5abd94c9e7bc7a1831d1964925 403 Gene3D G3DSA:1.20.140.10 250 402 3.5E-36 T 12-10-2018 R615_04375 22a86559503007b1803bb20f302a9a0f 542 Pfam PF00512 His Kinase A (phospho-acceptor) domain 288 389 5.8E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_04375 22a86559503007b1803bb20f302a9a0f 542 Gene3D G3DSA:1.10.287.130 264 382 1.2E-21 T 12-10-2018 R615_04375 22a86559503007b1803bb20f302a9a0f 542 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 434 537 2.5E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_04375 22a86559503007b1803bb20f302a9a0f 542 Gene3D G3DSA:3.30.565.10 383 537 1.3E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_04375 22a86559503007b1803bb20f302a9a0f 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 481 3.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04375 22a86559503007b1803bb20f302a9a0f 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 535 3.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04375 22a86559503007b1803bb20f302a9a0f 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 516 3.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04375 22a86559503007b1803bb20f302a9a0f 542 SUPERFAMILY SSF55874 378 536 2.36E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_04375 22a86559503007b1803bb20f302a9a0f 542 SUPERFAMILY SSF47384 283 323 3.53E-5 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_04375 22a86559503007b1803bb20f302a9a0f 542 SMART SM00387 430 538 4.6E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_03430 7295c01c35b8b0449e8d1e5069314640 328 Gene3D G3DSA:3.20.20.70 8 250 1.6E-74 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 4 318 3.5E-120 T 12-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 2 321 48.11 T 12-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 Pfam PF01207 Dihydrouridine synthase (Dus) 14 317 6.7E-104 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 SUPERFAMILY SSF51395 11 317 2.93E-82 T 12-10-2018 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 Gene3D G3DSA:1.10.1200.80 252 325 6.3E-8 T 12-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 R615_03430 7295c01c35b8b0449e8d1e5069314640 328 PIRSF PIRSF006621 2 328 2.4E-100 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_10660 7b784b6691933c019850322f8fbde882 758 Gene3D G3DSA:3.20.20.210 386 753 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 R615_10660 7b784b6691933c019850322f8fbde882 758 SUPERFAMILY SSF51726 394 755 6.02E-109 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 R615_10660 7b784b6691933c019850322f8fbde882 758 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 755 33.893 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 R615_10660 7b784b6691933c019850322f8fbde882 758 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 755 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 R615_10660 7b784b6691933c019850322f8fbde882 758 SUPERFAMILY SSF51726 5 390 1.57E-96 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 R615_10660 7b784b6691933c019850322f8fbde882 758 Gene3D G3DSA:3.20.20.210 6 521 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 R615_10660 7b784b6691933c019850322f8fbde882 758 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 428 750 3.2E-138 T 12-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 R615_10660 7b784b6691933c019850322f8fbde882 758 PIRSF PIRSF000382 1 758 1.8E-303 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 R615_10660 7b784b6691933c019850322f8fbde882 758 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 311 4.2E-107 T 12-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 Gene3D G3DSA:3.30.70.1230 1 169 1.0E-39 T 12-10-2018 IPR029787 Nucleotide cyclase R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 4 163 7.3E-16 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 SUPERFAMILY SSF49879 203 255 1.28E-14 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 SMART SM00044 2 154 0.0082 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 Gene3D G3DSA:2.60.200.20 182 285 1.3E-14 T 12-10-2018 R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 Pfam PF00498 FHA domain 213 256 3.8E-10 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 R615_02260 22c0c5d8d7faef34f87337ded49d581b 296 SUPERFAMILY SSF55073 4 171 1.05E-34 T 12-10-2018 IPR029787 Nucleotide cyclase R615_09450 7f190d308ed4cb5cb2c3810bd222e362 241 SUPERFAMILY SSF52402 5 196 1.05E-44 T 12-10-2018 R615_09450 7f190d308ed4cb5cb2c3810bd222e362 241 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 37 232 1.5E-78 T 12-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 R615_09450 7f190d308ed4cb5cb2c3810bd222e362 241 Gene3D G3DSA:3.40.50.620 1 240 1.3E-65 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_09450 7f190d308ed4cb5cb2c3810bd222e362 241 PIRSF PIRSF000857 1 238 9.4E-76 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 R615_09450 7f190d308ed4cb5cb2c3810bd222e362 241 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 33 208 1.6E-44 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 PRINTS PR00502 NUDIX hydrolase family signature 33 47 8.1E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 PRINTS PR00502 NUDIX hydrolase family signature 47 62 8.1E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 Pfam PF00293 NUDIX domain 7 145 2.2E-25 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.018 T 12-10-2018 IPR022927 RNA pyrophosphohydrolase RppH R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 SUPERFAMILY SSF55811 7 159 2.03E-32 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_16860 a562f5c7c515c5c2a07e67e12a783321 163 Gene3D G3DSA:3.90.79.10 1 159 2.7E-44 T 12-10-2018 R615_04760 161fc8f9f70a3a006d5503b6750a8d4a 248 Pfam PF00460 Flagella basal body rod protein 5 35 2.9E-6 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 R615_04760 161fc8f9f70a3a006d5503b6750a8d4a 248 SUPERFAMILY SSF117143 79 206 3.92E-18 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like R615_04760 161fc8f9f70a3a006d5503b6750a8d4a 248 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 121 1.5E-34 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G R615_04760 161fc8f9f70a3a006d5503b6750a8d4a 248 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 172 243 1.2E-20 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain R615_07000 9ad8cd137ce195f94fe5f0feea9163b3 346 Gene3D G3DSA:3.40.50.10800 201 296 7.2E-94 T 12-10-2018 R615_07000 9ad8cd137ce195f94fe5f0feea9163b3 346 Gene3D G3DSA:3.40.50.10800 32 321 7.2E-94 T 12-10-2018 R615_07000 9ad8cd137ce195f94fe5f0feea9163b3 346 Pfam PF02445 Quinolinate synthetase A protein 32 339 2.0E-101 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 R615_07000 9ad8cd137ce195f94fe5f0feea9163b3 346 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 27 340 3.4E-109 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 R615_07000 9ad8cd137ce195f94fe5f0feea9163b3 346 Gene3D G3DSA:3.40.50.10800 116 338 7.2E-94 T 12-10-2018 R615_07000 9ad8cd137ce195f94fe5f0feea9163b3 346 SUPERFAMILY SSF142754 30 340 1.19E-106 T 12-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 R615_16745 4221cde3e1f5b7bb5cb0c874f0824750 610 Gene3D G3DSA:1.20.58.1700 302 375 1.5E-162 T 12-10-2018 R615_16745 4221cde3e1f5b7bb5cb0c874f0824750 610 Gene3D G3DSA:3.10.490.10 468 610 1.8E-46 T 12-10-2018 R615_16745 4221cde3e1f5b7bb5cb0c874f0824750 610 SUPERFAMILY SSF75304 18 456 1.44E-106 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_16745 4221cde3e1f5b7bb5cb0c874f0824750 610 Gene3D G3DSA:3.90.1300.10 52 449 1.5E-162 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_16745 4221cde3e1f5b7bb5cb0c874f0824750 610 Pfam PF01425 Amidase 61 443 3.7E-85 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_16745 4221cde3e1f5b7bb5cb0c874f0824750 610 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 52 603 5.1E-241 T 12-10-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 R615_08440 8c841a8291a87fa98a289df20afb4abb 386 Pfam PF00999 Sodium/hydrogen exchanger family 12 367 2.0E-43 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 R615_08440 8c841a8291a87fa98a289df20afb4abb 386 Gene3D G3DSA:1.20.1530.20 2 374 2.1E-60 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_09815 8672fd19e52c0adb74ced995e90ea10d 164 Pfam PF02674 Colicin V production protein 4 144 3.8E-40 T 12-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 PIRSF PIRSF000110 1 485 8.0E-170 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 6 483 81.461 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 233 249 2.5E-45 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 215 232 2.5E-45 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 324 350 2.5E-45 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 163 191 2.5E-45 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 139 152 2.5E-45 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 Gene3D G3DSA:3.30.360.10 172 483 2.6E-127 T 12-10-2018 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 SUPERFAMILY SSF51735 3 186 4.53E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 173 179 - T 12-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 8 483 8.2E-175 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 Gene3D G3DSA:3.40.50.720 4 171 5.2E-38 T 12-10-2018 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 SUPERFAMILY SSF55347 178 481 2.03E-115 T 12-10-2018 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 10 183 9.7E-52 T 12-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_07080 64fcbfbe1eced8cb5ba7dd6e4becc828 485 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 185 481 3.6E-119 T 12-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 R615_13430 2142ab8c232579f0319a014511956e1e 572 Gene3D G3DSA:3.90.1310.30 53 224 3.3E-38 T 12-10-2018 R615_13430 2142ab8c232579f0319a014511956e1e 572 SUPERFAMILY SSF56601 177 563 1.43E-92 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like R615_13430 2142ab8c232579f0319a014511956e1e 572 Pfam PF00905 Penicillin binding protein transpeptidase domain 250 546 5.7E-72 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 R615_13430 2142ab8c232579f0319a014511956e1e 572 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 210 4.8E-17 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 R615_13430 2142ab8c232579f0319a014511956e1e 572 SUPERFAMILY SSF56519 57 221 5.36E-38 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 R615_13430 2142ab8c232579f0319a014511956e1e 572 Gene3D G3DSA:3.40.710.10 286 468 2.3E-109 T 12-10-2018 R615_13430 2142ab8c232579f0319a014511956e1e 572 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 13 562 40.25 T 12-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_13430 2142ab8c232579f0319a014511956e1e 572 Gene3D G3DSA:3.30.450.330 226 551 2.3E-109 T 12-10-2018 R615_09915 4adcf29b174726f1c7509d762dbde85c 453 SUPERFAMILY SSF53720 5 452 2.09E-135 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_09915 4adcf29b174726f1c7509d762dbde85c 453 Gene3D G3DSA:3.40.309.10 230 419 3.1E-143 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_09915 4adcf29b174726f1c7509d762dbde85c 453 Pfam PF00171 Aldehyde dehydrogenase family 5 450 7.5E-132 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_09915 4adcf29b174726f1c7509d762dbde85c 453 Gene3D G3DSA:3.40.605.10 7 445 3.1E-143 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_06000 400eed67344a7af25922489e1cae3a04 455 Pfam PF00012 Hsp70 protein 132 234 4.6E-8 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_06000 400eed67344a7af25922489e1cae3a04 455 Pfam PF00012 Hsp70 protein 331 448 1.2E-5 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 R615_06000 400eed67344a7af25922489e1cae3a04 455 Gene3D G3DSA:3.30.420.40 384 438 1.3E-14 T 12-10-2018 R615_06000 400eed67344a7af25922489e1cae3a04 455 Gene3D G3DSA:3.90.640.10 330 383 1.3E-14 T 12-10-2018 R615_06000 400eed67344a7af25922489e1cae3a04 455 SUPERFAMILY SSF53067 1 209 6.8E-23 T 12-10-2018 R615_06000 400eed67344a7af25922489e1cae3a04 455 SUPERFAMILY SSF53067 213 452 1.48E-30 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 Gene3D G3DSA:2.40.50.100 194 243 1.8E-8 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 Gene3D G3DSA:2.40.420.20 318 415 3.2E-22 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 SUPERFAMILY SSF111369 126 318 2.88E-6 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 Gene3D G3DSA:2.40.30.170 244 316 1.8E-8 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 Gene3D G3DSA:2.40.50.100 124 171 3.7E-6 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 Gene3D G3DSA:1.10.287.470 182 193 1.8E-8 T 12-10-2018 R615_02925 3e57fb444e7511f7ac3a20cdaef0c20f 446 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 109 307 2.9E-40 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_08700 2d9ab2abd81aba255f3f8f5e39531da6 321 Gene3D G3DSA:3.40.1030.10 74 318 7.8E-52 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_08700 2d9ab2abd81aba255f3f8f5e39531da6 321 Pfam PF02885 Glycosyl transferase family, helical bundle domain 8 68 5.1E-9 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_08700 2d9ab2abd81aba255f3f8f5e39531da6 321 SUPERFAMILY SSF47648 15 69 1.57E-10 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_08700 2d9ab2abd81aba255f3f8f5e39531da6 321 Gene3D G3DSA:1.20.970.10 5 73 1.8E-16 T 12-10-2018 R615_08700 2d9ab2abd81aba255f3f8f5e39531da6 321 SUPERFAMILY SSF52418 79 317 2.2E-32 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_02320 53c817cc62cc821414f56efae9af1d33 259 Pfam PF01551 Peptidase family M23 154 247 7.6E-30 T 12-10-2018 IPR016047 Peptidase M23 R615_02320 53c817cc62cc821414f56efae9af1d33 259 Pfam PF01476 LysM domain 42 84 9.1E-15 T 12-10-2018 IPR018392 LysM domain R615_02320 53c817cc62cc821414f56efae9af1d33 259 SMART SM00257 41 85 8.7E-16 T 12-10-2018 IPR018392 LysM domain R615_02320 53c817cc62cc821414f56efae9af1d33 259 SUPERFAMILY SSF51261 42 251 3.4E-50 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_02320 53c817cc62cc821414f56efae9af1d33 259 Gene3D G3DSA:2.70.70.10 91 253 2.6E-35 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_02320 53c817cc62cc821414f56efae9af1d33 259 Gene3D G3DSA:3.10.350.10 42 84 3.7E-15 T 12-10-2018 IPR036779 LysM domain superfamily R615_01110 fc5ec7f3bc2b827a4f76587e89b423b3 699 Gene3D G3DSA:2.40.170.20 181 699 1.8E-56 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_01110 fc5ec7f3bc2b827a4f76587e89b423b3 699 Gene3D G3DSA:2.170.130.10 40 177 2.1E-29 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_01110 fc5ec7f3bc2b827a4f76587e89b423b3 699 Pfam PF00593 TonB dependent receptor 221 695 4.5E-31 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_01110 fc5ec7f3bc2b827a4f76587e89b423b3 699 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 166 7.9E-20 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_01110 fc5ec7f3bc2b827a4f76587e89b423b3 699 SUPERFAMILY SSF56935 45 699 1.18E-92 T 12-10-2018 R615_05015 92e8af782ae760160ad26fd8d8fc57d3 183 Pfam PF10531 SLBB domain 100 141 2.8E-12 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_05015 92e8af782ae760160ad26fd8d8fc57d3 183 Pfam PF02563 Polysaccharide biosynthesis/export protein 20 94 2.7E-20 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 R615_05015 92e8af782ae760160ad26fd8d8fc57d3 183 Gene3D G3DSA:3.10.560.10 87 180 6.0E-15 T 12-10-2018 R615_05015 92e8af782ae760160ad26fd8d8fc57d3 183 SUPERFAMILY SSF142984 98 136 8.63E-5 T 12-10-2018 R615_08475 684d39fe61f8f977a89098586d2319cf 100 SUPERFAMILY SSF141371 7 84 9.02E-12 T 12-10-2018 R615_08475 684d39fe61f8f977a89098586d2319cf 100 Gene3D G3DSA:2.40.10.220 5 95 3.6E-10 T 12-10-2018 R615_08475 684d39fe61f8f977a89098586d2319cf 100 Pfam PF07238 PilZ domain 10 89 2.1E-6 T 12-10-2018 IPR009875 PilZ domain GO:0035438 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 16 813 8.4E-287 T 12-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 15 817 25.007 T 12-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 Pfam PF01553 Acyltransferase 296 427 3.5E-21 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 PIRSF PIRSF000437 22 816 2.9E-234 T 12-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 SMART SM00563 305 432 2.1E-23 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 SUPERFAMILY SSF69593 275 495 7.32E-23 T 12-10-2018 R615_12690 750c0cfac98b4791b144e2ddfc443816 817 PIRSF PIRSF500064 6 817 3.4E-244 T 12-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 R615_09400 138d808b696ee41176b78e8b189ad397 789 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 R615_09400 138d808b696ee41176b78e8b189ad397 789 SUPERFAMILY SSF56059 2 383 1.77E-105 T 12-10-2018 R615_09400 138d808b696ee41176b78e8b189ad397 789 Pfam PF00391 PEP-utilising enzyme, mobile domain 384 454 2.4E-27 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 R615_09400 138d808b696ee41176b78e8b189ad397 789 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 785 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 R615_09400 138d808b696ee41176b78e8b189ad397 789 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 480 780 1.9E-61 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 R615_09400 138d808b696ee41176b78e8b189ad397 789 Gene3D G3DSA:3.50.30.10 358 476 1.0E-41 T 12-10-2018 R615_09400 138d808b696ee41176b78e8b189ad397 789 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 R615_09400 138d808b696ee41176b78e8b189ad397 789 Gene3D G3DSA:3.20.20.60 477 787 1.3E-102 T 12-10-2018 R615_09400 138d808b696ee41176b78e8b189ad397 789 Gene3D G3DSA:3.30.1490.20 2 192 5.3E-71 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_09400 138d808b696ee41176b78e8b189ad397 789 PIRSF PIRSF000854 1 789 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 R615_09400 138d808b696ee41176b78e8b189ad397 789 SUPERFAMILY SSF52009 347 465 6.93E-36 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 R615_09400 138d808b696ee41176b78e8b189ad397 789 SUPERFAMILY SSF51621 460 785 1.36E-99 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 R615_09400 138d808b696ee41176b78e8b189ad397 789 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 342 1.4E-116 T 12-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 R615_09400 138d808b696ee41176b78e8b189ad397 789 Gene3D G3DSA:3.30.470.20 193 356 3.0E-55 T 12-10-2018 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 SMART SM00977 370 439 1.1E-13 T 12-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 Pfam PF01171 PP-loop family 24 203 1.3E-55 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 Pfam PF09179 TilS substrate binding domain 259 325 3.2E-17 T 12-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 SUPERFAMILY SSF82829 259 328 4.97E-20 T 12-10-2018 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 Gene3D G3DSA:1.20.59.20 243 328 7.5E-24 T 12-10-2018 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 Gene3D G3DSA:3.40.50.620 14 236 3.0E-69 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 23 206 9.6E-55 T 12-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 SUPERFAMILY SSF56037 342 432 1.91E-16 T 12-10-2018 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 SUPERFAMILY SSF52402 16 236 1.54E-58 T 12-10-2018 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 7 320 23.371 T 12-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 378 414 5.5E-12 T 12-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 R615_13665 f2dd3488a9f676bd4e11d679a639e5be 441 Pfam PF11734 TilS substrate C-terminal domain 377 430 4.9E-17 T 12-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 SUPERFAMILY SSF50715 4 203 3.31E-54 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 Gene3D G3DSA:2.170.120.20 104 204 1.2E-24 T 12-10-2018 IPR037121 Ribosomal protein L25, C-terminal R615_13270 0a922c174780a028320a6d1ec16f56d6 209 Gene3D G3DSA:2.40.240.10 2 102 6.5E-32 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 179 3.4E-43 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 9 102 4.0E-24 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 102 23.064 T 12-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 Pfam PF01386 Ribosomal L25p family 7 99 9.2E-29 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 R615_13270 0a922c174780a028320a6d1ec16f56d6 209 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 107 198 1.5E-28 T 12-10-2018 IPR020057 Ribosomal protein L25, beta domain R615_13270 0a922c174780a028320a6d1ec16f56d6 209 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 196 30.073 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 SUPERFAMILY SSF56317 221 487 1.31E-54 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 Gene3D G3DSA:3.40.630.30 1 219 9.2E-47 T 12-10-2018 R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 Pfam PF00795 Carbon-nitrogen hydrolase 225 483 9.2E-30 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 368 388 - T 12-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 Gene3D G3DSA:3.60.110.10 220 506 4.4E-54 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 SUPERFAMILY SSF55729 4 139 1.15E-12 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_02670 b6e36aa2789cedaf0b7aefc9c73b3e3d 512 Pfam PF00583 Acetyltransferase (GNAT) family 44 136 2.1E-6 T 12-10-2018 IPR000182 GNAT domain R615_01470 49ddc13b3d2f7623f2b3abd241124834 163 Pfam PF02635 DsrE/DsrF-like family 81 162 1.1E-5 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein R615_01470 49ddc13b3d2f7623f2b3abd241124834 163 SUPERFAMILY SSF75169 59 162 1.12E-10 T 12-10-2018 IPR027396 DsrEFH-like R615_01470 49ddc13b3d2f7623f2b3abd241124834 163 Gene3D G3DSA:3.40.1260.10 49 163 8.4E-7 T 12-10-2018 IPR027396 DsrEFH-like R615_04025 27aa78ec0d400bd1231af6d3b1f0b4b2 247 Gene3D G3DSA:3.20.20.70 1 247 5.6E-95 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04025 27aa78ec0d400bd1231af6d3b1f0b4b2 247 Pfam PF00121 Triosephosphate isomerase 5 244 1.1E-88 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_04025 27aa78ec0d400bd1231af6d3b1f0b4b2 247 ProSitePatterns PS00171 Triosephosphate isomerase active site. 163 173 - T 12-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_04025 27aa78ec0d400bd1231af6d3b1f0b4b2 247 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 246 57.024 T 12-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_04025 27aa78ec0d400bd1231af6d3b1f0b4b2 247 SUPERFAMILY SSF51351 1 246 1.17E-87 T 12-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_04025 27aa78ec0d400bd1231af6d3b1f0b4b2 247 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 237 2.1E-63 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_16090 a685408d7f0af054fd725d7ff13e957e 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 59 3.6E-26 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16090 a685408d7f0af054fd725d7ff13e957e 61 PIRSF PIRSF002211 1 61 1.4E-27 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16090 a685408d7f0af054fd725d7ff13e957e 61 Pfam PF00327 Ribosomal protein L30p/L7e 6 56 3.1E-20 T 12-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain R615_16090 a685408d7f0af054fd725d7ff13e957e 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 24 56 - T 12-10-2018 IPR018038 Ribosomal protein L30, conserved site R615_16090 a685408d7f0af054fd725d7ff13e957e 61 Gene3D G3DSA:3.30.1390.20 1 59 2.1E-26 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily R615_16090 a685408d7f0af054fd725d7ff13e957e 61 SUPERFAMILY SSF55129 4 59 1.83E-21 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily R615_16090 a685408d7f0af054fd725d7ff13e957e 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 3 60 21.662 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16100 577abad880e087776b4ae545a124209b 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 116 5.1E-41 T 12-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16100 577abad880e087776b4ae545a124209b 116 SUPERFAMILY SSF53137 4 114 5.23E-48 T 12-10-2018 R615_16100 577abad880e087776b4ae545a124209b 116 Gene3D G3DSA:3.30.420.100 2 116 3.2E-40 T 12-10-2018 R615_16100 577abad880e087776b4ae545a124209b 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 5.7E-40 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16100 577abad880e087776b4ae545a124209b 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 26.124 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 SUPERFAMILY SSF55174 5 91 6.04E-12 T 12-10-2018 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 Gene3D G3DSA:3.30.70.580 65 226 2.4E-50 T 12-10-2018 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 Pfam PF00849 RNA pseudouridylate synthase 64 197 6.4E-17 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 SMART SM00363 5 61 8.3E-6 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 Gene3D G3DSA:3.10.290.10 4 59 4.7E-14 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 Pfam PF01479 S4 domain 6 50 8.0E-12 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 Gene3D G3DSA:3.30.70.1560 133 214 2.4E-50 T 12-10-2018 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 SUPERFAMILY SSF55120 63 226 2.16E-41 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_10655 30d720c38dd78cac63aec7d8a5d10153 227 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 68 226 2.6E-43 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_01290 7a93758c666ecedec963f9ecee7d8666 525 SUPERFAMILY SSF56112 237 432 1.02E-6 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 Gene3D G3DSA:3.30.1490.20 115 181 5.3E-27 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 52.144 T 12-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 Gene3D G3DSA:3.30.470.80 182 298 1.5E-42 T 12-10-2018 R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 3 284 9.9E-84 T 12-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 SUPERFAMILY SSF56059 98 287 5.89E-50 T 12-10-2018 R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 Gene3D G3DSA:3.40.50.20 1 114 2.0E-39 T 12-10-2018 R615_13675 140a6c7865a5277c772b04d836b0d1fa 304 Pfam PF08443 RimK-like ATP-grasp domain 98 284 5.8E-69 T 12-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 R615_06255 804765f07df5502109028fa3c4d619f6 562 Pfam PF00575 S1 RNA binding domain 277 349 1.9E-20 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_06255 804765f07df5502109028fa3c4d619f6 562 Pfam PF00575 S1 RNA binding domain 105 173 8.8E-9 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_06255 804765f07df5502109028fa3c4d619f6 562 Pfam PF00575 S1 RNA binding domain 192 262 9.2E-22 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_06255 804765f07df5502109028fa3c4d619f6 562 Pfam PF00575 S1 RNA binding domain 21 87 2.4E-4 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_06255 804765f07df5502109028fa3c4d619f6 562 Pfam PF00575 S1 RNA binding domain 364 436 3.5E-18 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_06255 804765f07df5502109028fa3c4d619f6 562 Pfam PF00575 S1 RNA binding domain 452 522 1.7E-13 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_06255 804765f07df5502109028fa3c4d619f6 562 Gene3D G3DSA:2.40.50.140 8 99 6.5E-16 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 SUPERFAMILY SSF50249 431 534 1.34E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06255 804765f07df5502109028fa3c4d619f6 562 Gene3D G3DSA:2.40.50.140 360 446 1.2E-23 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 Gene3D G3DSA:2.40.50.140 271 359 7.4E-28 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 Gene3D G3DSA:2.40.50.140 100 183 1.3E-6 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 SMART SM00316 277 349 9.6E-25 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_06255 804765f07df5502109028fa3c4d619f6 562 SMART SM00316 451 522 1.2E-16 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_06255 804765f07df5502109028fa3c4d619f6 562 SMART SM00316 105 173 1.0E-6 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_06255 804765f07df5502109028fa3c4d619f6 562 SMART SM00316 21 89 2.2E-6 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_06255 804765f07df5502109028fa3c4d619f6 562 SMART SM00316 364 436 2.7E-20 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_06255 804765f07df5502109028fa3c4d619f6 562 SMART SM00316 192 262 4.7E-28 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 128 145 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 157 177 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 292 311 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 110 126 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 23 41 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 332 350 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 86 105 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 41 55 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 PRINTS PR00681 Ribosomal protein S1 signature 214 235 1.7E-88 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 SUPERFAMILY SSF50249 344 443 7.09E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06255 804765f07df5502109028fa3c4d619f6 562 SUPERFAMILY SSF50249 3 114 3.35E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06255 804765f07df5502109028fa3c4d619f6 562 SUPERFAMILY SSF50249 257 358 4.1E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06255 804765f07df5502109028fa3c4d619f6 562 Gene3D G3DSA:2.40.50.140 447 529 5.3E-16 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 5 522 8.3E-211 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 R615_06255 804765f07df5502109028fa3c4d619f6 562 Gene3D G3DSA:2.40.50.140 189 270 1.3E-27 T 12-10-2018 R615_06255 804765f07df5502109028fa3c4d619f6 562 SUPERFAMILY SSF50249 90 176 8.21E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_06255 804765f07df5502109028fa3c4d619f6 562 PIRSF PIRSF002111 1 536 3.6E-210 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 R615_06255 804765f07df5502109028fa3c4d619f6 562 SUPERFAMILY SSF50249 191 278 3.73E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_10540 7b8c67c195b7cb4755fe8ebd161965ed 219 SUPERFAMILY SSF52058 45 196 7.78E-23 T 12-10-2018 R615_10540 7b8c67c195b7cb4755fe8ebd161965ed 219 Pfam PF13855 Leucine rich repeat 76 131 1.1E-6 T 12-10-2018 IPR001611 Leucine-rich repeat GO:0005515 R615_10540 7b8c67c195b7cb4755fe8ebd161965ed 219 Gene3D G3DSA:3.80.10.10 30 208 1.5E-34 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily R615_12165 e37190ca31de8ba5b6e903b0812890da 314 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 309 7.0E-130 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 R615_12165 e37190ca31de8ba5b6e903b0812890da 314 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 297 1.1E-66 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme R615_12165 e37190ca31de8ba5b6e903b0812890da 314 SUPERFAMILY SSF53686 3 306 1.96E-96 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme R615_12165 e37190ca31de8ba5b6e903b0812890da 314 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 309 6.8E-133 T 12-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 R615_12165 e37190ca31de8ba5b6e903b0812890da 314 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 R615_12165 e37190ca31de8ba5b6e903b0812890da 314 Gene3D G3DSA:3.40.50.1100 43 145 1.0E-122 T 12-10-2018 R615_12165 e37190ca31de8ba5b6e903b0812890da 314 Gene3D G3DSA:3.40.50.1100 11 304 1.0E-122 T 12-10-2018 R615_12780 6a2b7113f56063596b87db755e936e60 599 SMART SM00838 404 489 0.0028 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_12780 6a2b7113f56063596b87db755e936e60 599 Pfam PF03144 Elongation factor Tu domain 2 208 277 3.9E-7 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 Gene3D G3DSA:2.40.30.10 189 287 7.2E-32 T 12-10-2018 R615_12780 6a2b7113f56063596b87db755e936e60 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 2.4E-52 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 TIGRFAM TIGR01393 lepA: elongation factor 4 6 598 1.9E-291 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 Gene3D G3DSA:3.30.70.870 289 370 1.5E-35 T 12-10-2018 R615_12780 6a2b7113f56063596b87db755e936e60 599 SUPERFAMILY SSF50447 169 291 1.24E-26 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_12780 6a2b7113f56063596b87db755e936e60 599 Gene3D G3DSA:3.30.70.3380 371 481 2.6E-39 T 12-10-2018 R615_12780 6a2b7113f56063596b87db755e936e60 599 Gene3D G3DSA:3.40.50.300 4 188 3.4E-71 T 12-10-2018 R615_12780 6a2b7113f56063596b87db755e936e60 599 Pfam PF00679 Elongation factor G C-terminus 402 487 2.9E-20 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like R615_12780 6a2b7113f56063596b87db755e936e60 599 Gene3D G3DSA:3.30.70.2570 482 556 2.0E-30 T 12-10-2018 IPR038363 LepA, C-terminal domain superfamily R615_12780 6a2b7113f56063596b87db755e936e60 599 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 2.6E-48 T 12-10-2018 IPR013842 GTP-binding protein LepA, C-terminal R615_12780 6a2b7113f56063596b87db755e936e60 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 298.615 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 PRINTS PR00315 GTP-binding elongation factor signature 52 60 1.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 SUPERFAMILY SSF54980 403 496 2.59E-24 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_12780 6a2b7113f56063596b87db755e936e60 599 SUPERFAMILY SSF54980 295 373 3.09E-18 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_12780 6a2b7113f56063596b87db755e936e60 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 175 1.0E-18 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_12780 6a2b7113f56063596b87db755e936e60 599 SUPERFAMILY SSF52540 5 208 2.93E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12780 6a2b7113f56063596b87db755e936e60 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_01700 d2eebee10a8838537ca0f8c92335a2b7 1165 Gene3D G3DSA:3.40.50.300 131 324 2.0E-5 T 12-10-2018 R615_01700 d2eebee10a8838537ca0f8c92335a2b7 1165 SUPERFAMILY SSF52540 125 310 7.35E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01700 d2eebee10a8838537ca0f8c92335a2b7 1165 Pfam PF14331 ImcF-related N-terminal domain 200 456 2.6E-94 T 12-10-2018 IPR025743 ImcF-related, N-terminal domain R615_01700 d2eebee10a8838537ca0f8c92335a2b7 1165 Pfam PF06744 Type VI secretion protein IcmF C-terminal 917 1113 6.9E-50 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal R615_01700 d2eebee10a8838537ca0f8c92335a2b7 1165 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 1163 0.0 T 12-10-2018 IPR017731 Type VI secretion system, IcmF R615_01700 d2eebee10a8838537ca0f8c92335a2b7 1165 Pfam PF06761 Intracellular multiplication and human macrophage-killing 508 807 4.8E-65 T 12-10-2018 IPR009612 ImcF-related R615_09505 135cf6733b55d3c80c274f8372526e00 161 Gene3D G3DSA:3.10.129.10 3 157 4.9E-49 T 12-10-2018 R615_09505 135cf6733b55d3c80c274f8372526e00 161 PRINTS PR01483 Fatty acid synthase signature 48 69 7.8E-6 T 12-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 R615_09505 135cf6733b55d3c80c274f8372526e00 161 PRINTS PR01483 Fatty acid synthase signature 26 48 7.8E-6 T 12-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 R615_09505 135cf6733b55d3c80c274f8372526e00 161 Pfam PF01575 MaoC like domain 20 113 1.4E-25 T 12-10-2018 IPR002539 MaoC-like dehydratase domain R615_09505 135cf6733b55d3c80c274f8372526e00 161 SUPERFAMILY SSF54637 5 141 1.52E-44 T 12-10-2018 IPR029069 HotDog domain superfamily R615_04615 4c35b26cfbe1c071cdfe5a55f3f7acd5 236 SUPERFAMILY SSF103088 90 219 1.44E-12 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_04615 4c35b26cfbe1c071cdfe5a55f3f7acd5 236 Pfam PF00691 OmpA family 95 188 5.8E-8 T 12-10-2018 IPR006665 OmpA-like domain R615_04615 4c35b26cfbe1c071cdfe5a55f3f7acd5 236 Gene3D G3DSA:3.30.1330.60 43 227 1.6E-15 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_09440 384342c8f15a56daa9747def00fb823f 377 PRINTS PR00095 Anthranilate synthase component I signature 310 324 1.9E-13 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_09440 384342c8f15a56daa9747def00fb823f 377 PRINTS PR00095 Anthranilate synthase component I signature 325 339 1.9E-13 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_09440 384342c8f15a56daa9747def00fb823f 377 PRINTS PR00095 Anthranilate synthase component I signature 230 243 1.9E-13 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_09440 384342c8f15a56daa9747def00fb823f 377 PRINTS PR00095 Anthranilate synthase component I signature 216 229 1.9E-13 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_09440 384342c8f15a56daa9747def00fb823f 377 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 42 369 2.9E-99 T 12-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 R615_09440 384342c8f15a56daa9747def00fb823f 377 SUPERFAMILY SSF56322 16 373 6.93E-104 T 12-10-2018 IPR005801 ADC synthase GO:0009058 R615_09440 384342c8f15a56daa9747def00fb823f 377 Gene3D G3DSA:3.60.120.10 7 375 1.2E-114 T 12-10-2018 IPR005801 ADC synthase GO:0009058 R615_09440 384342c8f15a56daa9747def00fb823f 377 Pfam PF00425 chorismate binding enzyme 116 368 4.5E-82 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal R615_13020 2dc478ab847e752b83a04cdac07b6fe5 487 SUPERFAMILY SSF63829 185 376 1.01E-7 T 12-10-2018 R615_13020 2dc478ab847e752b83a04cdac07b6fe5 487 Pfam PF13449 Esterase-like activity of phytase 74 451 1.5E-54 T 12-10-2018 IPR027372 Phytase-like domain R615_12585 4007126508b57652cb6d15798534ed04 272 SMART SM00978 140 271 1.6E-26 T 12-10-2018 IPR007379 Tim44-like domain R615_12585 4007126508b57652cb6d15798534ed04 272 Gene3D G3DSA:3.10.450.240 149 271 2.9E-5 T 12-10-2018 R615_12585 4007126508b57652cb6d15798534ed04 272 SUPERFAMILY SSF54427 146 270 7.45E-15 T 12-10-2018 IPR032710 NTF2-like domain superfamily R615_12585 4007126508b57652cb6d15798534ed04 272 Pfam PF04280 Tim44-like domain 150 270 2.5E-11 T 12-10-2018 IPR007379 Tim44-like domain R615_15935 6e02dd50a9bbe2e9760a5215d88db101 457 Gene3D G3DSA:3.40.50.300 1 173 8.0E-14 T 12-10-2018 R615_15935 6e02dd50a9bbe2e9760a5215d88db101 457 Gene3D G3DSA:3.40.50.300 181 370 1.5E-25 T 12-10-2018 R615_15935 6e02dd50a9bbe2e9760a5215d88db101 457 Pfam PF04851 Type III restriction enzyme, res subunit 1 155 1.4E-9 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 R615_15935 6e02dd50a9bbe2e9760a5215d88db101 457 SUPERFAMILY SSF52540 113 356 1.16E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15935 6e02dd50a9bbe2e9760a5215d88db101 457 SUPERFAMILY SSF52540 2 164 7.48E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15935 6e02dd50a9bbe2e9760a5215d88db101 457 Pfam PF00271 Helicase conserved C-terminal domain 259 353 7.8E-7 T 12-10-2018 IPR001650 Helicase, C-terminal R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 SUPERFAMILY SSF46894 118 218 6.24E-23 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 SUPERFAMILY SSF52172 2 118 3.7E-35 T 12-10-2018 IPR011006 CheY-like superfamily R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 Gene3D G3DSA:1.10.10.10 119 220 4.0E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 Pfam PF00072 Response regulator receiver domain 4 112 5.0E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 217 5.7E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 SMART SM00448 1 112 5.3E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 Gene3D G3DSA:3.40.50.2300 1 118 7.8E-37 T 12-10-2018 R615_17390 43549a0fd123d7dda8f1abe4761b83da 223 SMART SM00862 146 217 1.2E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 73 6.0E-22 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 1.1E-36 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 Gene3D G3DSA:4.10.640.10 20 75 1.6E-27 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.4E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.4E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.4E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.4E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 Pfam PF01084 Ribosomal protein S18 19 68 1.0E-24 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 12-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.887 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15665 3207ad270fe3cf2c68a97bc8fcc18ac0 76 SUPERFAMILY SSF46911 3 74 4.19E-29 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_05210 25a0f06dfd6867b42eb0655f3f556f1f 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 4.4E-16 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 R615_05210 25a0f06dfd6867b42eb0655f3f556f1f 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 4.4E-16 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 R615_05210 25a0f06dfd6867b42eb0655f3f556f1f 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 4.4E-16 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 R615_05210 25a0f06dfd6867b42eb0655f3f556f1f 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 86 3.3E-27 T 12-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 R615_05210 25a0f06dfd6867b42eb0655f3f556f1f 89 PIRSF PIRSF004669 1 89 1.6E-28 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 R615_05210 25a0f06dfd6867b42eb0655f3f556f1f 89 Pfam PF01313 Bacterial export proteins, family 3 8 78 3.8E-27 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 R615_03890 da117a5ab489647908899d7d4a759a0b 993 Pfam PF00271 Helicase conserved C-terminal domain 450 554 2.3E-16 T 12-10-2018 IPR001650 Helicase, C-terminal R615_03890 da117a5ab489647908899d7d4a759a0b 993 Gene3D G3DSA:3.40.50.300 355 587 2.9E-40 T 12-10-2018 R615_03890 da117a5ab489647908899d7d4a759a0b 993 SMART SM00487 33 228 1.8E-25 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_03890 da117a5ab489647908899d7d4a759a0b 993 SMART SM00490 475 554 2.1E-17 T 12-10-2018 IPR001650 Helicase, C-terminal R615_03890 da117a5ab489647908899d7d4a759a0b 993 SUPERFAMILY SSF52540 156 599 7.32E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03890 da117a5ab489647908899d7d4a759a0b 993 Gene3D G3DSA:3.40.50.10810 34 306 1.5E-57 T 12-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily R615_03890 da117a5ab489647908899d7d4a759a0b 993 SUPERFAMILY SSF52540 24 244 1.65E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03890 da117a5ab489647908899d7d4a759a0b 993 Pfam PF00176 SNF2 family N-terminal domain 53 302 2.7E-33 T 12-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_01870 0856cd5abe6c060bec04bc2740572d20 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 16 148 3.3E-17 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 3.0E-46 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Gene3D G3DSA:3.40.50.300 72 379 1.1E-109 T 12-10-2018 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 SUPERFAMILY SSF50447 262 393 2.43E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_01870 0856cd5abe6c060bec04bc2740572d20 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 6 529 6.5E-259 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 SUPERFAMILY SSF52540 10 277 9.16E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01870 0856cd5abe6c060bec04bc2740572d20 529 SUPERFAMILY SSF54980 393 468 1.29E-18 T 12-10-2018 IPR035647 EF-G domain III/V-like R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 51.091 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 9.6E-9 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 8.2E-46 T 12-10-2018 IPR032090 Peptide chain release factor 3, C-terminal R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Gene3D G3DSA:3.30.70.3280 390 529 5.1E-52 T 12-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily R615_01870 0856cd5abe6c060bec04bc2740572d20 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 5.2E-10 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 5.2E-10 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 5.2E-10 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 5.2E-10 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_01870 0856cd5abe6c060bec04bc2740572d20 529 Gene3D G3DSA:3.40.50.300 110 275 1.1E-109 T 12-10-2018 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Pfam PF00989 PAS fold 97 151 1.9E-5 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Gene3D G3DSA:3.30.565.10 277 432 1.2E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Pfam PF11808 Domain of unknown function (DUF3329) 4 88 5.5E-22 T 12-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 SUPERFAMILY SSF47384 190 269 2.75E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 SUPERFAMILY SSF55874 260 426 7.99E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Gene3D G3DSA:1.10.287.130 198 270 2.2E-23 T 12-10-2018 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 1.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 365 1.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 379 1.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 1.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 SMART SM00388 203 270 1.7E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 269 2.8E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Gene3D G3DSA:3.30.450.20 102 197 2.6E-7 T 12-10-2018 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 SMART SM00091 96 162 0.0012 T 12-10-2018 IPR000014 PAS domain R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 94 421 1.9E-127 T 12-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 SUPERFAMILY SSF55785 107 202 9.77E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 317 425 1.2E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00795 5c9b9fc7b0d4d3ea0193ce31a43eb8d6 443 SMART SM00387 314 426 4.2E-32 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 SUPERFAMILY SSF58104 358 667 6.28E-64 T 12-10-2018 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 479 629 6.6E-41 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 SMART SM00304 338 390 3.7E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 532 561 4.9E-22 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 503 530 4.9E-22 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 SMART SM00283 405 666 5.3E-51 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 Pfam PF00672 HAMP domain 344 386 2.6E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_13865 027cebeed9e33f31d089aa9b7b5dc235 668 Gene3D G3DSA:1.10.287.950 338 668 4.5E-64 T 12-10-2018 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 19 871 5.2E-269 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Pfam PF08264 Anticodon-binding domain of tRNA 715 869 6.2E-24 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Gene3D G3DSA:3.90.740.10 200 438 1.6E-221 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 63 74 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 557 570 5.0E-33 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 431 446 5.0E-33 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 591 600 5.0E-33 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 56 67 5.0E-33 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 245 268 5.0E-33 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 SUPERFAMILY SSF47323 682 955 2.43E-75 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 7 955 20.919 T 12-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 SUPERFAMILY SSF50677 209 433 3.87E-37 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 33 670 2.1E-196 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Pfam PF06827 Zinc finger found in FPG and IleRS 925 952 5.0E-8 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Gene3D G3DSA:3.40.50.620 30 659 1.6E-221 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_03290 fe2fb716d1be61b27c897499772ff35d 964 SUPERFAMILY SSF52374 9 675 2.93E-136 T 12-10-2018 R615_03290 fe2fb716d1be61b27c897499772ff35d 964 Gene3D G3DSA:1.10.730.20 670 956 3.3E-85 T 12-10-2018 R615_17010 f63a93ebbacde59841228db41fd55b8a 143 SMART SM00363 19 82 5.2E-6 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_17010 f63a93ebbacde59841228db41fd55b8a 143 Pfam PF01479 S4 domain 20 64 3.7E-10 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_17010 f63a93ebbacde59841228db41fd55b8a 143 Gene3D G3DSA:3.10.290.10 12 118 1.0E-34 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_17010 f63a93ebbacde59841228db41fd55b8a 143 PIRSF PIRSF016821 16 143 4.8E-42 T 12-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 R615_17010 f63a93ebbacde59841228db41fd55b8a 143 SUPERFAMILY SSF55174 18 112 1.03E-27 T 12-10-2018 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 SUPERFAMILY SSF53732 2 472 1.96E-160 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 349 360 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 292 306 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 139 154 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 114 122 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 88 101 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 201 214 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 406 419 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 125 138 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 PRINTS PR00415 Aconitase family signature 215 228 5.8E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 Gene3D G3DSA:3.30.499.20 5 292 1.6E-94 T 12-10-2018 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 3.3E-153 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 1.6E-224 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 472 58.522 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 R615_09880 67c0fb954117c9c32d23ab55db912f27 472 Gene3D G3DSA:3.30.499.10 331 472 6.7E-49 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_15635 c3ae812b14885572fa6f0a59a573768d 677 SUPERFAMILY SSF56935 28 676 8.93E-84 T 12-10-2018 R615_15635 c3ae812b14885572fa6f0a59a573768d 677 Gene3D G3DSA:2.40.170.20 159 676 5.7E-66 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_15635 c3ae812b14885572fa6f0a59a573768d 677 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 49 675 1.5E-214 T 12-10-2018 IPR010100 TonB-dependent copper receptor R615_15635 c3ae812b14885572fa6f0a59a573768d 677 Gene3D G3DSA:2.170.130.10 34 155 2.6E-13 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_15635 c3ae812b14885572fa6f0a59a573768d 677 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 148 4.4E-13 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_15635 c3ae812b14885572fa6f0a59a573768d 677 Pfam PF00593 TonB dependent receptor 202 675 6.6E-37 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_16585 d9d9500587be765eaa96daf91c3d0803 551 Gene3D G3DSA:3.30.300.310 446 548 3.0E-30 T 12-10-2018 R615_16585 d9d9500587be765eaa96daf91c3d0803 551 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_16585 d9d9500587be765eaa96daf91c3d0803 551 Pfam PF00501 AMP-binding enzyme 37 450 1.5E-88 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_16585 d9d9500587be765eaa96daf91c3d0803 551 Gene3D G3DSA:3.40.50.12780 2 445 4.6E-115 T 12-10-2018 R615_16585 d9d9500587be765eaa96daf91c3d0803 551 Pfam PF13193 AMP-binding enzyme C-terminal domain 460 534 7.1E-16 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_16585 d9d9500587be765eaa96daf91c3d0803 551 SUPERFAMILY SSF56801 15 547 1.96E-131 T 12-10-2018 R615_02440 7d37615f28fd477a523c1d89d18dece1 283 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 2.3E-111 T 12-10-2018 IPR022522 Flagellar motor stator, MotA R615_02440 7d37615f28fd477a523c1d89d18dece1 283 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site R615_02440 7d37615f28fd477a523c1d89d18dece1 283 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 239 1.1E-9 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 SUPERFAMILY SSF51735 317 496 1.58E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 495 1.3E-60 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 Gene3D G3DSA:3.40.50.720 315 497 1.3E-67 T 12-10-2018 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 230 5.4E-37 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 12-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 Gene3D G3DSA:3.90.226.10 1 313 1.2E-103 T 12-10-2018 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 SUPERFAMILY SSF48179 496 634 1.53E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 12-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 592 5.4E-26 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 Gene3D G3DSA:1.10.1040.50 498 709 1.8E-80 T 12-10-2018 R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 SUPERFAMILY SSF52096 2 305 3.38E-65 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_11675 b524b83b4237bb3f5b5d7eeccf913c97 715 SUPERFAMILY SSF48179 623 714 3.74E-23 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_06395 88f07e9164856d99fcad1521a79982e4 228 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 18 203 29.796 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 R615_06395 88f07e9164856d99fcad1521a79982e4 228 SUPERFAMILY SSF53328 18 212 8.77E-64 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_06395 88f07e9164856d99fcad1521a79982e4 228 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 149 172 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_06395 88f07e9164856d99fcad1521a79982e4 228 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 18 207 7.0E-74 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 R615_06395 88f07e9164856d99fcad1521a79982e4 228 Pfam PF00551 Formyl transferase 18 196 6.6E-61 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 R615_06395 88f07e9164856d99fcad1521a79982e4 228 Gene3D G3DSA:3.40.50.170 18 227 3.4E-79 T 12-10-2018 R615_15520 6c58842cc02e5243b6eb6ccb1fcc7b40 459 Pfam PF01618 MotA/TolQ/ExbB proton channel family 324 437 5.3E-28 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_15520 6c58842cc02e5243b6eb6ccb1fcc7b40 459 PIRSF PIRSF037714 6 459 6.7E-146 T 12-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein R615_16555 5182828c76ee846c90d5db1d206d4b58 497 Gene3D G3DSA:3.30.2130.10 336 488 3.6E-15 T 12-10-2018 R615_16555 5182828c76ee846c90d5db1d206d4b58 497 Gene3D G3DSA:3.40.1160.10 16 333 5.9E-49 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_16555 5182828c76ee846c90d5db1d206d4b58 497 Pfam PF00696 Amino acid kinase family 19 318 5.9E-18 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 R615_16555 5182828c76ee846c90d5db1d206d4b58 497 Pfam PF13840 ACT domain 422 482 1.8E-8 T 12-10-2018 IPR027795 CASTOR, ACT domain R615_16555 5182828c76ee846c90d5db1d206d4b58 497 SUPERFAMILY SSF55021 422 488 1.86E-13 T 12-10-2018 R615_16555 5182828c76ee846c90d5db1d206d4b58 497 SUPERFAMILY SSF53633 19 333 6.88E-48 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.0E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 SUPERFAMILY SSF53850 90 320 2.17E-41 T 12-10-2018 R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 Gene3D G3DSA:1.10.10.10 1 86 2.4E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 Pfam PF03466 LysR substrate binding domain 89 278 8.6E-38 T 12-10-2018 IPR005119 LysR, substrate-binding R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 Gene3D G3DSA:3.40.190.10 93 303 9.0E-96 T 12-10-2018 R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 Gene3D G3DSA:3.40.190.10 167 267 9.0E-96 T 12-10-2018 R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 SUPERFAMILY SSF46785 1 89 2.57E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09455 7110b931dcfdbebcb301b33cffab3cc3 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_11040 a9c33b097796b5656cc3953f7c0d07db 371 Pfam PF03969 AFG1-like ATPase 3 367 2.4E-147 T 12-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 R615_11040 a9c33b097796b5656cc3953f7c0d07db 371 Gene3D G3DSA:3.40.50.300 12 197 2.0E-17 T 12-10-2018 R615_11040 a9c33b097796b5656cc3953f7c0d07db 371 Hamap MF_01919 Cell division protein ZapE [zapE]. 2 370 52.305 T 12-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 R615_11040 a9c33b097796b5656cc3953f7c0d07db 371 SUPERFAMILY SSF52540 36 186 2.39E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07560 921f7347eeac499d9d37f8cc84d287a1 191 Pfam PF03922 OmpW family 24 191 1.5E-36 T 12-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 R615_07560 921f7347eeac499d9d37f8cc84d287a1 191 SUPERFAMILY SSF56925 23 191 7.32E-20 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_07560 921f7347eeac499d9d37f8cc84d287a1 191 Gene3D G3DSA:2.40.160.20 22 191 3.3E-50 T 12-10-2018 R615_05075 cb994d5ddee585285c925a51d37abcef 484 Gene3D G3DSA:3.40.50.300 135 317 8.1E-67 T 12-10-2018 R615_05075 cb994d5ddee585285c925a51d37abcef 484 Gene3D G3DSA:3.40.50.2300 1 134 2.8E-46 T 12-10-2018 R615_05075 cb994d5ddee585285c925a51d37abcef 484 Pfam PF02954 Bacterial regulatory protein, Fis family 434 474 7.9E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_05075 cb994d5ddee585285c925a51d37abcef 484 Pfam PF06490 Flagellar regulatory protein FleQ 6 123 9.2E-27 T 12-10-2018 IPR010518 Flagellar regulatory FleQ R615_05075 cb994d5ddee585285c925a51d37abcef 484 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 R615_05075 cb994d5ddee585285c925a51d37abcef 484 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 440 457 7.7E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_05075 cb994d5ddee585285c925a51d37abcef 484 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 457 477 7.7E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_05075 cb994d5ddee585285c925a51d37abcef 484 SMART SM00382 166 310 1.8E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_05075 cb994d5ddee585285c925a51d37abcef 484 Gene3D G3DSA:1.10.8.60 318 394 1.2E-26 T 12-10-2018 R615_05075 cb994d5ddee585285c925a51d37abcef 484 Gene3D G3DSA:1.10.10.60 425 480 1.6E-12 T 12-10-2018 R615_05075 cb994d5ddee585285c925a51d37abcef 484 SUPERFAMILY SSF46689 426 476 2.33E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_05075 cb994d5ddee585285c925a51d37abcef 484 SUPERFAMILY SSF52172 3 191 1.61E-8 T 12-10-2018 IPR011006 CheY-like superfamily R615_05075 cb994d5ddee585285c925a51d37abcef 484 Pfam PF00158 Sigma-54 interaction domain 146 312 8.2E-74 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 R615_05075 cb994d5ddee585285c925a51d37abcef 484 SUPERFAMILY SSF52540 146 387 1.5E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05075 cb994d5ddee585285c925a51d37abcef 484 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 R615_14860 ca3ee314afdccca8c74bc2691abdb405 240 SUPERFAMILY SSF75217 96 240 6.54E-28 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_14860 ca3ee314afdccca8c74bc2691abdb405 240 Gene3D G3DSA:3.40.1280.10 95 240 9.2E-32 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_14860 ca3ee314afdccca8c74bc2691abdb405 240 SUPERFAMILY SSF55315 3 88 2.12E-15 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like R615_14860 ca3ee314afdccca8c74bc2691abdb405 240 Gene3D G3DSA:3.30.1330.30 2 88 3.0E-12 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like R615_14860 ca3ee314afdccca8c74bc2691abdb405 240 SMART SM00967 22 92 3.4E-6 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 R615_14860 ca3ee314afdccca8c74bc2691abdb405 240 Pfam PF00588 SpoU rRNA Methylase family 101 236 1.1E-26 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 R615_04180 7c260eea3429949c0950318137f0aef2 390 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 388 1.2E-160 T 12-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 R615_04180 7c260eea3429949c0950318137f0aef2 390 PIRSF PIRSF015658 1 390 9.5E-176 T 12-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 R615_04180 7c260eea3429949c0950318137f0aef2 390 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 384 9.3E-170 T 12-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 R615_08240 00cec2af3b6afa9eb6d44cd01a2ba595 334 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 37 327 5.0E-71 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 R615_08240 00cec2af3b6afa9eb6d44cd01a2ba595 334 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 30 324 7.2E-93 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 R615_08240 00cec2af3b6afa9eb6d44cd01a2ba595 334 SUPERFAMILY SSF52540 62 209 8.76E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08240 00cec2af3b6afa9eb6d44cd01a2ba595 334 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 17 329 35.337 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 Gene3D G3DSA:1.10.10.60 441 498 8.8E-24 T 12-10-2018 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 Pfam PF04963 Sigma-54 factor, core binding domain 133 327 5.1E-60 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 PRINTS PR00045 Sigma-54 factor signature 210 227 8.3E-31 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 PRINTS PR00045 Sigma-54 factor signature 416 427 8.3E-31 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 PRINTS PR00045 Sigma-54 factor signature 400 412 8.3E-31 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 PRINTS PR00045 Sigma-54 factor signature 474 492 8.3E-31 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 498 1.6E-155 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 479 486 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 388 407 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 1.2E-16 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 PIRSF PIRSF000774 1 501 4.9E-155 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 Pfam PF04552 Sigma-54, DNA binding domain 341 499 1.2E-70 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding R615_02120 02a6eb8f1f719a2f189c6a2c832581a5 501 Gene3D G3DSA:1.10.10.1330 139 263 2.8E-21 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily R615_12015 9d78ef6d1ff4c3a25093fb13010d9df1 370 Pfam PF01345 Domain of unknown function DUF11 280 367 7.1E-9 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12015 9d78ef6d1ff4c3a25093fb13010d9df1 370 Gene3D G3DSA:2.60.40.740 265 368 4.1E-5 T 12-10-2018 R615_12015 9d78ef6d1ff4c3a25093fb13010d9df1 370 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 280 326 1.4E-13 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_00900 321d92a4c98fe2ec761fb00b86737693 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 12-10-2018 IPR018336 Ribonuclease PH, conserved site R615_00900 321d92a4c98fe2ec761fb00b86737693 238 SUPERFAMILY SSF55666 152 237 3.93E-24 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_00900 321d92a4c98fe2ec761fb00b86737693 238 Pfam PF03725 3' exoribonuclease family, domain 2 157 224 9.3E-9 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_00900 321d92a4c98fe2ec761fb00b86737693 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 43.875 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 R615_00900 321d92a4c98fe2ec761fb00b86737693 238 Gene3D G3DSA:3.30.230.70 10 238 1.1E-62 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_00900 321d92a4c98fe2ec761fb00b86737693 238 SUPERFAMILY SSF54211 1 181 2.08E-45 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_00900 321d92a4c98fe2ec761fb00b86737693 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 4.1E-115 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 R615_00900 321d92a4c98fe2ec761fb00b86737693 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.2E-24 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 R615_12705 a7da7f81e213c904807979e800bc6a9d 276 Gene3D G3DSA:3.30.420.40 50 258 4.9E-64 T 12-10-2018 R615_12705 a7da7f81e213c904807979e800bc6a9d 276 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 50 258 8.8E-56 T 12-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 R615_12705 a7da7f81e213c904807979e800bc6a9d 276 Gene3D G3DSA:3.30.420.40 141 227 4.9E-64 T 12-10-2018 R615_12705 a7da7f81e213c904807979e800bc6a9d 276 SUPERFAMILY SSF53067 156 256 1.55E-12 T 12-10-2018 R615_12705 a7da7f81e213c904807979e800bc6a9d 276 Pfam PF00814 Glycoprotease family 78 196 6.2E-28 T 12-10-2018 IPR000905 Gcp-like domain R615_12705 a7da7f81e213c904807979e800bc6a9d 276 SUPERFAMILY SSF53067 50 151 8.2E-28 T 12-10-2018 R615_09820 053c904613bc379ca89b4764d92e1bce 184 Gene3D G3DSA:3.30.70.1070 107 175 1.5E-10 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_09820 053c904613bc379ca89b4764d92e1bce 184 Pfam PF05036 Sporulation related domain 107 169 1.1E-12 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 R615_09820 053c904613bc379ca89b4764d92e1bce 184 SUPERFAMILY SSF110997 106 176 6.8E-14 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_15380 2f35da5ca7c075caec476f1418a61d49 551 Gene3D G3DSA:3.30.410.10 204 488 1.8E-190 T 12-10-2018 R615_15380 2f35da5ca7c075caec476f1418a61d49 551 SUPERFAMILY SSF51905 59 549 9.07E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_15380 2f35da5ca7c075caec476f1418a61d49 551 SUPERFAMILY SSF54373 366 496 5.89E-44 T 12-10-2018 R615_15380 2f35da5ca7c075caec476f1418a61d49 551 Pfam PF00732 GMC oxidoreductase 151 347 2.8E-6 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_15380 2f35da5ca7c075caec476f1418a61d49 551 Pfam PF05199 GMC oxidoreductase 482 542 8.3E-16 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 R615_15380 2f35da5ca7c075caec476f1418a61d49 551 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 157 180 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_15380 2f35da5ca7c075caec476f1418a61d49 551 Gene3D G3DSA:3.50.50.60 61 548 1.8E-190 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.3E-14 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.3E-14 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 7.3E-14 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 Pfam PF00117 Glutamine amidotransferase class-I 4 191 1.4E-55 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00097 Anthranilate synthase component II signature 169 182 6.3E-37 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00097 Anthranilate synthase component II signature 74 85 6.3E-37 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00097 Anthranilate synthase component II signature 99 107 6.3E-37 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00097 Anthranilate synthase component II signature 119 131 6.3E-37 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00097 Anthranilate synthase component II signature 2 16 6.3E-37 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00097 Anthranilate synthase component II signature 47 56 6.3E-37 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 SUPERFAMILY SSF52317 1 192 1.56E-55 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 7.3E-6 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 7.3E-6 T 12-10-2018 R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 Gene3D G3DSA:3.40.50.880 1 192 3.1E-63 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_14160 3fd910d5cbc89f0f7af3c2c033462d08 197 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 3.4E-86 T 12-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 R615_04160 b991e6b30a28cf1c7efc879b3a3f9f4d 342 Gene3D G3DSA:3.40.50.150 107 316 4.6E-27 T 12-10-2018 R615_04160 b991e6b30a28cf1c7efc879b3a3f9f4d 342 Pfam PF08003 Protein of unknown function (DUF1698) 31 341 1.5E-127 T 12-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like R615_04160 b991e6b30a28cf1c7efc879b3a3f9f4d 342 SUPERFAMILY SSF53335 107 338 5.93E-35 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_04160 b991e6b30a28cf1c7efc879b3a3f9f4d 342 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 28 342 51.48 T 12-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 R615_04160 b991e6b30a28cf1c7efc879b3a3f9f4d 342 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 27 341 2.0E-137 T 12-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 R615_16885 09cb8af34edbf24b67783c18c632525b 404 Gene3D G3DSA:3.30.9.50 87 279 6.0E-106 T 12-10-2018 R615_16885 09cb8af34edbf24b67783c18c632525b 404 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 304 317 - T 12-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 R615_16885 09cb8af34edbf24b67783c18c632525b 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.8E-15 T 12-10-2018 R615_16885 09cb8af34edbf24b67783c18c632525b 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 1.8E-15 T 12-10-2018 R615_16885 09cb8af34edbf24b67783c18c632525b 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 321 1.8E-15 T 12-10-2018 R615_16885 09cb8af34edbf24b67783c18c632525b 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 305 1.8E-15 T 12-10-2018 R615_16885 09cb8af34edbf24b67783c18c632525b 404 SUPERFAMILY SSF51905 1 401 1.3E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16885 09cb8af34edbf24b67783c18c632525b 404 Gene3D G3DSA:3.50.50.60 4 348 6.0E-106 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16885 09cb8af34edbf24b67783c18c632525b 404 Pfam PF01494 FAD binding domain 3 350 1.8E-23 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 R615_16885 09cb8af34edbf24b67783c18c632525b 404 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 4 400 8.9E-126 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 Pfam PF04055 Radical SAM superfamily 111 284 2.4E-18 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 Gene3D G3DSA:1.10.150.530 7 68 1.6E-23 T 12-10-2018 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 SUPERFAMILY SSF102114 104 309 5.23E-14 T 12-10-2018 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 Gene3D G3DSA:3.20.20.70 69 339 3.6E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 6 359 2.8E-138 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 PIRSF PIRSF006004 4 367 1.7E-146 T 12-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 R615_12640 8c954f07a010f8e8ad77f463ed3e463b 382 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 7 354 71.605 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 R615_15140 f7c2148f5fd78c5f9793117d793bb362 291 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 210 222 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site R615_15140 f7c2148f5fd78c5f9793117d793bb362 291 Pfam PF00348 Polyprenyl synthetase 27 260 1.9E-60 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 R615_15140 f7c2148f5fd78c5f9793117d793bb362 291 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site R615_15140 f7c2148f5fd78c5f9793117d793bb362 291 SUPERFAMILY SSF48576 20 278 1.91E-86 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily R615_15140 f7c2148f5fd78c5f9793117d793bb362 291 Gene3D G3DSA:1.10.600.10 2 291 1.4E-99 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 193 209 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 SMART SM00478 40 191 5.7E-46 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 193 209 5.4E-4 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 7 273 9.7E-112 T 12-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Pfam PF00633 Helix-hairpin-helix motif 100 129 9.9E-8 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Gene3D G3DSA:3.90.79.10 233 349 2.1E-19 T 12-10-2018 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 168 2.8E-18 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Gene3D G3DSA:1.10.1670.10 11 210 1.6E-87 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Gene3D G3DSA:1.10.340.30 22 133 1.6E-87 T 12-10-2018 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 Pfam PF14815 NUDIX domain 237 345 6.0E-24 T 12-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 ProSitePatterns PS01155 Endonuclease III family signature. 103 132 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 SUPERFAMILY SSF48150 6 225 1.54E-76 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 R615_01600 5d8bad1198bed4a5b4770025655ab96b 349 SUPERFAMILY SSF55811 221 347 3.01E-26 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_04370 68f196859ccf4e729342ab36963b8dae 167 SMART SM00344 11 121 6.7E-42 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 R615_04370 68f196859ccf4e729342ab36963b8dae 167 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site R615_04370 68f196859ccf4e729342ab36963b8dae 167 Gene3D G3DSA:3.30.70.920 65 149 2.8E-26 T 12-10-2018 R615_04370 68f196859ccf4e729342ab36963b8dae 167 Gene3D G3DSA:1.10.10.10 2 64 1.5E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_04370 68f196859ccf4e729342ab36963b8dae 167 SUPERFAMILY SSF54909 71 159 3.43E-19 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel R615_04370 68f196859ccf4e729342ab36963b8dae 167 SUPERFAMILY SSF46785 6 96 2.41E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_04370 68f196859ccf4e729342ab36963b8dae 167 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 58 1.6E-18 T 12-10-2018 R615_04370 68f196859ccf4e729342ab36963b8dae 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 8.9E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 R615_04370 68f196859ccf4e729342ab36963b8dae 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 8.9E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 R615_04370 68f196859ccf4e729342ab36963b8dae 167 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 8.9E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 R615_04370 68f196859ccf4e729342ab36963b8dae 167 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 4.6E-23 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 12-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 Gene3D G3DSA:3.90.170.10 266 430 1.1E-66 T 12-10-2018 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 Pfam PF00709 Adenylosuccinate synthetase 5 422 1.3E-175 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 428 1.1E-180 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 12-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 SMART SM00788 4 423 8.5E-283 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 Gene3D G3DSA:1.10.300.10 108 206 2.5E-101 T 12-10-2018 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 Gene3D G3DSA:3.40.440.10 6 256 2.5E-101 T 12-10-2018 R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 SUPERFAMILY SSF52540 3 428 4.25E-171 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02525 ba55d6337b8737d7e62c17a7ad430dbb 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 204.613 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 R615_04290 e207009e0ea498e976041e77ed09acfa 203 Gene3D G3DSA:1.20.1050.10 83 198 1.2E-37 T 12-10-2018 R615_04290 e207009e0ea498e976041e77ed09acfa 203 Gene3D G3DSA:3.40.30.10 1 78 4.0E-27 T 12-10-2018 R615_04290 e207009e0ea498e976041e77ed09acfa 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 76 9.1E-19 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_04290 e207009e0ea498e976041e77ed09acfa 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 125 199 5.0E-15 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal R615_04290 e207009e0ea498e976041e77ed09acfa 203 SUPERFAMILY SSF52833 1 90 3.43E-24 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_04290 e207009e0ea498e976041e77ed09acfa 203 SUPERFAMILY SSF47616 80 202 1.95E-27 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF51230 1132 1206 1.01E-17 T 12-10-2018 IPR011053 Single hybrid motif R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1207 0.0 T 12-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 810 1030 2.3E-47 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF160467 811 902 7.59E-20 T 12-10-2018 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF52440 1 112 4.32E-44 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF56059 83 323 8.31E-64 T 12-10-2018 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SMART SM00878 335 445 6.6E-41 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 2.9E-65 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Gene3D G3DSA:3.30.470.130 1 450 2.5E-177 T 12-10-2018 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Gene3D G3DSA:3.30.1360.40 794 888 3.5E-27 T 12-10-2018 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Gene3D G3DSA:2.40.100.10 634 788 2.7E-59 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 6.5E-42 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF51246 330 447 5.76E-30 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Gene3D G3DSA:2.40.100.10 892 1113 1.4E-93 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 477 754 2.5E-81 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Gene3D G3DSA:2.40.50.100 1136 1206 4.1E-20 T 12-10-2018 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Pfam PF02785 Biotin carboxylase C-terminal domain 335 445 1.3E-29 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF50891 926 1056 1.1E-25 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SMART SM00796 809 1040 2.7E-113 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SUPERFAMILY SSF50891 635 759 1.74E-31 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 SMART SM00797 476 771 1.2E-149 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 Pfam PF00364 Biotin-requiring enzyme 1147 1206 2.1E-16 T 12-10-2018 IPR000089 Biotin/lipoyl attachment R615_05600 37b9cbdaff44707f473e1f073e8815e2 1210 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 454 775 2.2E-84 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B R615_17060 0a1c56561a7cbdb536ef52e6831b5855 249 Gene3D G3DSA:3.40.50.300 25 246 4.3E-35 T 12-10-2018 R615_17060 0a1c56561a7cbdb536ef52e6831b5855 249 PIRSF PIRSF009320 23 248 5.1E-26 T 12-10-2018 R615_17060 0a1c56561a7cbdb536ef52e6831b5855 249 SUPERFAMILY SSF52540 23 239 3.17E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17060 0a1c56561a7cbdb536ef52e6831b5855 249 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 25 208 1.5E-16 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 SUPERFAMILY SSF53850 2 208 3.04E-65 T 12-10-2018 R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 Pfam PF01634 ATP phosphoribosyltransferase 54 204 2.1E-47 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 4 209 52.212 T 12-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 Gene3D G3DSA:3.40.190.10 96 177 1.0E-70 T 12-10-2018 R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 5 185 3.9E-55 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 144 165 - T 12-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 R615_02180 037c9c83fec0b3fc911b3e275b42efed 216 Gene3D G3DSA:3.40.190.10 6 198 1.0E-70 T 12-10-2018 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 Pfam PF13437 HlyD family secretion protein 177 227 1.5E-5 T 12-10-2018 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 373 8.4E-36 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 Gene3D G3DSA:2.40.50.100 67 208 1.8E-38 T 12-10-2018 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 Gene3D G3DSA:1.10.287.470 104 174 1.8E-38 T 12-10-2018 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 Gene3D G3DSA:2.40.420.20 308 373 1.8E-38 T 12-10-2018 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 Gene3D G3DSA:2.40.30.170 60 307 1.8E-38 T 12-10-2018 R615_15795 92ef5533efa4470900490fd6bf9813a0 384 SUPERFAMILY SSF111369 59 301 7.72E-18 T 12-10-2018 R615_04140 95cdadec34e837cd1ea7a6196a76d47d 241 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 26 236 6.3E-58 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 R615_04140 95cdadec34e837cd1ea7a6196a76d47d 241 SUPERFAMILY SSF56784 22 236 8.27E-47 T 12-10-2018 IPR036412 HAD-like superfamily R615_04140 95cdadec34e837cd1ea7a6196a76d47d 241 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 128 203 1.2E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_04140 95cdadec34e837cd1ea7a6196a76d47d 241 Gene3D G3DSA:1.10.150.240 38 112 2.1E-52 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 R615_04140 95cdadec34e837cd1ea7a6196a76d47d 241 Gene3D G3DSA:3.40.50.1000 26 231 2.1E-52 T 12-10-2018 IPR023214 HAD superfamily R615_04140 95cdadec34e837cd1ea7a6196a76d47d 241 Pfam PF13419 Haloacid dehalogenase-like hydrolase 26 210 2.3E-24 T 12-10-2018 R615_13645 4448eb8116a52f1d953196b5d929444c 418 Pfam PF03600 Citrate transporter 18 363 9.5E-27 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 Gene3D G3DSA:1.10.10.60 1 65 2.0E-19 T 12-10-2018 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 SUPERFAMILY SSF46689 8 86 7.18E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 Pfam PF08362 YcdC-like protein, C-terminal region 66 207 5.5E-50 T 12-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 Gene3D G3DSA:1.10.357.10 66 207 1.7E-50 T 12-10-2018 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 9.2E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 9.2E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_15550 33822e577b9c02cda4af2091a22a3d72 216 SUPERFAMILY SSF48498 83 207 1.93E-41 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_15550 33822e577b9c02cda4af2091a22a3d72 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site R615_15550 33822e577b9c02cda4af2091a22a3d72 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 5.5E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_08660 7fc6df7742acf292299c757f37c5661e 882 Gene3D G3DSA:3.30.980.40 393 498 1.4E-33 T 12-10-2018 R615_08660 7fc6df7742acf292299c757f37c5661e 882 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 24 190 1.1E-35 T 12-10-2018 IPR025199 DNA translocase FtsK, 4TM region R615_08660 7fc6df7742acf292299c757f37c5661e 882 SUPERFAMILY SSF46785 815 880 2.86E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_08660 7fc6df7742acf292299c757f37c5661e 882 Pfam PF09397 Ftsk gamma domain 817 877 1.6E-26 T 12-10-2018 IPR018541 FtsK gamma domain R615_08660 7fc6df7742acf292299c757f37c5661e 882 Gene3D G3DSA:1.10.10.10 812 876 7.6E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_08660 7fc6df7742acf292299c757f37c5661e 882 SUPERFAMILY SSF52540 475 788 8.86E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08660 7fc6df7742acf292299c757f37c5661e 882 Gene3D G3DSA:3.40.50.300 499 801 1.4E-119 T 12-10-2018 R615_08660 7fc6df7742acf292299c757f37c5661e 882 Pfam PF01580 FtsK/SpoIIIE family 502 715 4.7E-67 T 12-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 R615_08660 7fc6df7742acf292299c757f37c5661e 882 SMART SM00843 815 880 4.9E-38 T 12-10-2018 IPR018541 FtsK gamma domain R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 12-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 3 268 2.5E-87 T 12-10-2018 R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 3 269 3.7E-76 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 SUPERFAMILY SSF56219 3 269 4.19E-79 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 198 214 - T 12-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 262 2.3E-16 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase R615_09200 73895363e8cc135f39f21cfa2c5c83c2 270 Gene3D G3DSA:3.60.10.10 3 270 2.9E-69 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_02430 de105ea66f9abd691a25259a85f79a59 279 SMART SM00450 13 128 2.0E-16 T 12-10-2018 IPR001763 Rhodanese-like domain R615_02430 de105ea66f9abd691a25259a85f79a59 279 SMART SM00450 152 271 4.5E-13 T 12-10-2018 IPR001763 Rhodanese-like domain R615_02430 de105ea66f9abd691a25259a85f79a59 279 Pfam PF00581 Rhodanese-like domain 154 267 3.7E-12 T 12-10-2018 IPR001763 Rhodanese-like domain R615_02430 de105ea66f9abd691a25259a85f79a59 279 Pfam PF00581 Rhodanese-like domain 15 123 4.0E-11 T 12-10-2018 IPR001763 Rhodanese-like domain R615_02430 de105ea66f9abd691a25259a85f79a59 279 SUPERFAMILY SSF52821 146 277 8.91E-26 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_02430 de105ea66f9abd691a25259a85f79a59 279 Gene3D G3DSA:3.40.250.10 6 145 2.8E-34 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_02430 de105ea66f9abd691a25259a85f79a59 279 ProSitePatterns PS00380 Rhodanese signature 1. 38 49 - T 12-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 R615_02430 de105ea66f9abd691a25259a85f79a59 279 SUPERFAMILY SSF52821 10 179 1.44E-33 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_02430 de105ea66f9abd691a25259a85f79a59 279 Gene3D G3DSA:3.40.250.10 149 274 1.8E-26 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 854 0.0 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 SUPERFAMILY SSF101353 254 446 8.63E-62 T 12-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Gene3D G3DSA:3.30.54.20 622 677 8.8E-51 T 12-10-2018 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Pfam PF01411 tRNA synthetases class II (A) 5 553 5.6E-222 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 696 1.7E-16 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Gene3D G3DSA:3.30.930.10 1 250 7.4E-121 T 12-10-2018 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 SUPERFAMILY SSF55681 2 253 1.79E-106 T 12-10-2018 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Pfam PF02272 DHHA1 domain 732 870 2.8E-26 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 SUPERFAMILY SSF50447 452 550 6.71E-17 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Gene3D G3DSA:2.40.30.130 469 549 7.6E-12 T 12-10-2018 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 3.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 3.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 3.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 3.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 3.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Gene3D G3DSA:3.30.980.10 561 697 8.8E-51 T 12-10-2018 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 SMART SM00863 651 696 2.8E-18 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 202.187 T 12-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 Gene3D G3DSA:3.10.310.40 764 871 7.8E-32 T 12-10-2018 R615_14640 23ae910ccf0f6f2ba2616efd830babdf 875 SUPERFAMILY SSF55186 550 711 3.27E-49 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 R615_08645 c647c5c8b9de586ab49bdec6289fa986 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 4.8E-28 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 R615_08645 c647c5c8b9de586ab49bdec6289fa986 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.18 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 R615_08645 c647c5c8b9de586ab49bdec6289fa986 72 SUPERFAMILY SSF50249 1 70 5.72E-29 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_08645 c647c5c8b9de586ab49bdec6289fa986 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.9E-38 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 R615_08645 c647c5c8b9de586ab49bdec6289fa986 72 SMART SM00316 4 72 8.0E-6 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_08645 c647c5c8b9de586ab49bdec6289fa986 72 Gene3D G3DSA:2.40.50.140 1 72 2.7E-36 T 12-10-2018 R615_17000 9cf92ec96ed4a801d427ebafd3ed1465 187 Pfam PF00293 NUDIX domain 46 162 1.9E-9 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_17000 9cf92ec96ed4a801d427ebafd3ed1465 187 Gene3D G3DSA:3.90.79.10 5 182 1.0E-39 T 12-10-2018 R615_17000 9cf92ec96ed4a801d427ebafd3ed1465 187 ProSitePatterns PS00893 Nudix box signature. 78 99 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_17000 9cf92ec96ed4a801d427ebafd3ed1465 187 SUPERFAMILY SSF55811 5 177 4.06E-32 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_03935 83e96192fa571727b116bfee105e9eb0 190 Hamap MF_01151 Protein GrpE [grpE]. 2 181 20.558 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 Gene3D G3DSA:3.90.20.20 22 124 1.2E-26 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 ProSitePatterns PS01071 grpE protein signature. 136 179 - T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 Pfam PF01025 GrpE 23 181 3.9E-52 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 PRINTS PR00773 GrpE protein signature 160 179 3.0E-24 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 PRINTS PR00773 GrpE protein signature 133 148 3.0E-24 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 PRINTS PR00773 GrpE protein signature 51 67 3.0E-24 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 PRINTS PR00773 GrpE protein signature 79 94 3.0E-24 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 SUPERFAMILY SSF51064 127 182 4.18E-20 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 Gene3D G3DSA:2.30.22.10 126 181 1.6E-25 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 R615_03935 83e96192fa571727b116bfee105e9eb0 190 SUPERFAMILY SSF58014 34 123 2.09E-24 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 R615_03115 27155f07a4f7e45e865190a061b950a0 381 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 32 380 1.5E-129 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_03115 27155f07a4f7e45e865190a061b950a0 381 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 337 361 - T 12-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_03115 27155f07a4f7e45e865190a061b950a0 381 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 26 381 27.5 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_03115 27155f07a4f7e45e865190a061b950a0 381 Pfam PF01098 Cell cycle protein 35 379 6.0E-106 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_11450 17db78f02a83a798e484e64798578235 342 Pfam PF01180 Dihydroorotate dehydrogenase 48 340 6.0E-91 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 R615_11450 17db78f02a83a798e484e64798578235 342 Gene3D G3DSA:3.20.20.70 2 336 6.1E-132 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_11450 17db78f02a83a798e484e64798578235 342 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 4 340 2.1E-132 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 R615_11450 17db78f02a83a798e484e64798578235 342 SUPERFAMILY SSF51395 4 339 1.01E-103 T 12-10-2018 R615_11450 17db78f02a83a798e484e64798578235 342 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 R615_11450 17db78f02a83a798e484e64798578235 342 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 3 336 49.804 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 R615_11450 17db78f02a83a798e484e64798578235 342 PIRSF PIRSF000164 13 342 9.9E-98 T 12-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 R615_11450 17db78f02a83a798e484e64798578235 342 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 81 100 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 R615_02740 350e212d142187ea3c54cd33185d55f2 514 Gene3D G3DSA:3.40.1450.10 79 311 6.9E-209 T 12-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02740 350e212d142187ea3c54cd33185d55f2 514 SUPERFAMILY SSF53649 8 510 1.44E-68 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 R615_02740 350e212d142187ea3c54cd33185d55f2 514 PIRSF PIRSF001492 1 512 4.5E-200 T 12-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02740 350e212d142187ea3c54cd33185d55f2 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 298 1.3E-76 T 12-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02740 350e212d142187ea3c54cd33185d55f2 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 511 48.457 T 12-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02740 350e212d142187ea3c54cd33185d55f2 514 SUPERFAMILY SSF64158 79 309 3.53E-78 T 12-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02740 350e212d142187ea3c54cd33185d55f2 514 Pfam PF01676 Metalloenzyme superfamily 8 498 8.8E-75 T 12-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 R615_02740 350e212d142187ea3c54cd33185d55f2 514 Gene3D G3DSA:3.40.720.10 7 508 6.9E-209 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 R615_02740 350e212d142187ea3c54cd33185d55f2 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 7 510 9.2E-217 T 12-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_05285 f74c16b2a49d5f1d5ee1981e7bb4a926 160 SUPERFAMILY SSF50341 12 154 6.67E-43 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_05285 f74c16b2a49d5f1d5ee1981e7bb4a926 160 SMART SM00260 12 149 8.2E-52 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05285 f74c16b2a49d5f1d5ee1981e7bb4a926 160 Pfam PF01584 CheW-like domain 16 152 3.9E-40 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05285 f74c16b2a49d5f1d5ee1981e7bb4a926 160 Gene3D G3DSA:2.30.30.40 18 143 2.6E-45 T 12-10-2018 R615_05285 f74c16b2a49d5f1d5ee1981e7bb4a926 160 Gene3D G3DSA:2.40.50.180 35 144 2.6E-45 T 12-10-2018 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 Gene3D G3DSA:1.10.1040.10 189 335 3.3E-48 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PIRSF PIRSF000114 2 332 4.0E-105 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 Gene3D G3DSA:3.40.50.720 1 187 7.0E-61 T 12-10-2018 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 SUPERFAMILY SSF48179 179 331 2.72E-51 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 180 319 4.0E-49 T 12-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 159 3.2E-49 T 12-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 SUPERFAMILY SSF51735 4 180 1.03E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 5.1E-44 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 238 255 5.1E-44 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 5.1E-44 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 133 153 5.1E-44 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 198 222 5.1E-44 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 173 197 5.1E-44 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_08490 99c11d88f960ea5fbda5232d9922807c 341 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 4 322 34.484 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 ProSitePatterns PS00211 ABC transporters family signature. 507 521 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 Gene3D G3DSA:1.20.1560.10 7 336 1.6E-25 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 SMART SM00382 390 581 5.7E-22 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 SUPERFAMILY SSF52540 351 605 3.42E-89 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 Pfam PF00664 ABC transporter transmembrane region 41 308 6.8E-19 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 Pfam PF00005 ABC transporter 382 535 5.0E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 Gene3D G3DSA:3.40.50.300 351 608 2.4E-92 T 12-10-2018 R615_12955 d3f8acf72b467f6c22154c1a19942db4 613 SUPERFAMILY SSF90123 20 526 3.92E-50 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 3 138 6.9E-53 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 Pfam PF02556 Preprotein translocase subunit SecB 3 141 2.6E-56 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 11 28 2.3E-35 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 121 139 2.3E-35 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 95 117 2.3E-35 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 71 91 2.3E-35 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 Gene3D G3DSA:3.10.420.10 1 157 3.0E-59 T 12-10-2018 IPR035958 SecB-like superfamily R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 SUPERFAMILY SSF54611 3 140 5.23E-52 T 12-10-2018 IPR035958 SecB-like superfamily R615_02750 ce58aa91fd39a3babd4f94ad6e461c24 157 Hamap MF_00821 Protein-export protein SecB [secB]. 1 143 33.454 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 R615_07425 73d291098c3ac075b3e20e9e5eaa6fd4 1084 Gene3D G3DSA:2.60.40.1120 995 1083 3.9E-9 T 12-10-2018 R615_07425 73d291098c3ac075b3e20e9e5eaa6fd4 1084 SUPERFAMILY SSF49464 995 1070 1.06E-6 T 12-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily R615_05090 64d0148b77332bda3606d335c9e754d9 452 Pfam PF02954 Bacterial regulatory protein, Fis family 399 437 1.3E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_05090 64d0148b77332bda3606d335c9e754d9 452 Pfam PF00072 Response regulator receiver domain 4 111 4.0E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05090 64d0148b77332bda3606d335c9e754d9 452 SMART SM00382 148 291 9.8E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_05090 64d0148b77332bda3606d335c9e754d9 452 Gene3D G3DSA:1.10.10.60 381 441 5.0E-7 T 12-10-2018 R615_05090 64d0148b77332bda3606d335c9e754d9 452 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 214 229 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 R615_05090 64d0148b77332bda3606d335c9e754d9 452 SUPERFAMILY SSF52172 1 172 1.1E-45 T 12-10-2018 IPR011006 CheY-like superfamily R615_05090 64d0148b77332bda3606d335c9e754d9 452 Gene3D G3DSA:3.40.50.2300 1 117 1.6E-37 T 12-10-2018 R615_05090 64d0148b77332bda3606d335c9e754d9 452 SUPERFAMILY SSF46689 341 438 8.96E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_05090 64d0148b77332bda3606d335c9e754d9 452 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 152 165 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 R615_05090 64d0148b77332bda3606d335c9e754d9 452 Gene3D G3DSA:3.40.50.300 118 299 1.9E-64 T 12-10-2018 R615_05090 64d0148b77332bda3606d335c9e754d9 452 Gene3D G3DSA:1.10.8.60 300 376 2.9E-22 T 12-10-2018 R615_05090 64d0148b77332bda3606d335c9e754d9 452 SMART SM00448 1 112 3.4E-41 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05090 64d0148b77332bda3606d335c9e754d9 452 SUPERFAMILY SSF52540 136 369 1.22E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05090 64d0148b77332bda3606d335c9e754d9 452 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 341 350 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site R615_05090 64d0148b77332bda3606d335c9e754d9 452 Pfam PF00158 Sigma-54 interaction domain 131 294 1.2E-68 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 R615_01835 984ea0126da6db0bdbb7f6508cf7e351 683 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 298 578 1.0E-24 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal R615_01835 984ea0126da6db0bdbb7f6508cf7e351 683 Pfam PF08479 POTRA domain, ShlB-type 185 237 4.1E-11 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type R615_01835 984ea0126da6db0bdbb7f6508cf7e351 683 Gene3D G3DSA:3.10.20.310 158 237 1.4E-10 T 12-10-2018 R615_01835 984ea0126da6db0bdbb7f6508cf7e351 683 Gene3D G3DSA:2.40.160.50 269 661 1.4E-52 T 12-10-2018 R615_01215 e12f9cae2b75ad4c889854f1bcf0673b 164 SUPERFAMILY SSF53271 4 144 1.1E-35 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_01215 e12f9cae2b75ad4c889854f1bcf0673b 164 Gene3D G3DSA:3.40.50.2020 1 156 9.2E-42 T 12-10-2018 R615_01215 e12f9cae2b75ad4c889854f1bcf0673b 164 Pfam PF00156 Phosphoribosyl transferase domain 16 133 3.6E-15 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 Gene3D G3DSA:1.25.40.10 37 259 2.1E-41 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 Pfam PF13181 Tetratricopeptide repeat 111 134 0.0027 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 SMART SM00028 108 141 360.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 SMART SM00028 144 177 0.2 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 SMART SM00028 178 211 500.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 SMART SM00028 74 107 13.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 SMART SM00028 40 73 0.078 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 Pfam PF13432 Tetratricopeptide repeat 46 101 0.0015 T 12-10-2018 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 Pfam PF13432 Tetratricopeptide repeat 149 203 0.0012 T 12-10-2018 R615_12635 68de12d3304a2489d1bfc50b5a4e48da 265 SUPERFAMILY SSF81901 43 246 2.88E-22 T 12-10-2018 R615_03410 d726f517de080c1df791607c0af4289a 794 SUPERFAMILY SSF52172 654 783 1.04E-23 T 12-10-2018 IPR011006 CheY-like superfamily R615_03410 d726f517de080c1df791607c0af4289a 794 Pfam PF00072 Response regulator receiver domain 657 774 2.1E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_03410 d726f517de080c1df791607c0af4289a 794 Gene3D G3DSA:3.40.50.2300 649 784 5.7E-24 T 12-10-2018 R615_03410 d726f517de080c1df791607c0af4289a 794 Pfam PF07696 7TMR-DISM extracellular 2 48 182 2.5E-22 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_03410 d726f517de080c1df791607c0af4289a 794 Gene3D G3DSA:1.10.287.130 401 474 3.1E-14 T 12-10-2018 R615_03410 d726f517de080c1df791607c0af4289a 794 SMART SM00448 655 774 4.8E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_03410 d726f517de080c1df791607c0af4289a 794 Gene3D G3DSA:3.30.565.10 475 641 4.8E-19 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03410 d726f517de080c1df791607c0af4289a 794 SUPERFAMILY SSF55874 465 636 2.76E-15 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03410 d726f517de080c1df791607c0af4289a 794 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 476 1.3E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_03410 d726f517de080c1df791607c0af4289a 794 Gene3D G3DSA:2.60.40.2380 46 189 1.3E-11 T 12-10-2018 R615_03410 d726f517de080c1df791607c0af4289a 794 SMART SM00388 411 476 1.9E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_03410 d726f517de080c1df791607c0af4289a 794 SUPERFAMILY SSF47384 411 477 2.16E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 PIRSF PIRSF006621 16 345 5.6E-70 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 Pfam PF01207 Dihydrouridine synthase (Dus) 30 340 7.1E-84 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 Gene3D G3DSA:3.20.20.70 24 266 2.3E-71 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 26 343 9.1E-141 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 SUPERFAMILY SSF51395 27 341 7.0E-70 T 12-10-2018 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 Gene3D G3DSA:1.20.120.1460 273 347 2.4E-21 T 12-10-2018 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 109 127 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 R615_08600 34a364d796c66df3c4c066d942fe16cc 347 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 22 346 50.971 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 196 285 2.5E-10 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 401 420 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 SUPERFAMILY SSF56645 73 295 2.62E-42 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 Gene3D G3DSA:1.20.140.10 300 430 7.0E-35 T 12-10-2018 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 PIRSF PIRSF016578 74 180 9.8E-4 T 12-10-2018 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 PIRSF PIRSF016578 207 427 1.4E-8 T 12-10-2018 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 304 425 1.5E-27 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 SUPERFAMILY SSF47203 301 425 2.58E-36 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 Gene3D G3DSA:1.10.540.10 67 191 3.2E-23 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 78 188 4.4E-20 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_06895 dfa2a677186c7953d67ff3f24dd74aff 433 Gene3D G3DSA:2.40.110.10 196 295 3.2E-16 T 12-10-2018 R615_05475 31629ae26f55fc677aa9b1a762a49a47 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.306 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 R615_05475 31629ae26f55fc677aa9b1a762a49a47 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.6E-72 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 R615_05475 31629ae26f55fc677aa9b1a762a49a47 185 Gene3D G3DSA:1.10.132.20 12 182 8.5E-66 T 12-10-2018 R615_05475 31629ae26f55fc677aa9b1a762a49a47 185 Pfam PF01765 Ribosome recycling factor 22 183 9.7E-63 T 12-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 R615_05475 31629ae26f55fc677aa9b1a762a49a47 185 Gene3D G3DSA:3.30.1360.40 31 105 8.5E-66 T 12-10-2018 R615_05475 31629ae26f55fc677aa9b1a762a49a47 185 SUPERFAMILY SSF55194 1 185 7.06E-72 T 12-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 R615_06215 4341d1d1a392ca46b6078afbc9aa2b55 439 Pfam PF01979 Amidohydrolase family 62 410 9.7E-66 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 R615_06215 4341d1d1a392ca46b6078afbc9aa2b55 439 Gene3D G3DSA:3.20.20.140 65 355 1.5E-151 T 12-10-2018 R615_06215 4341d1d1a392ca46b6078afbc9aa2b55 439 Gene3D G3DSA:2.30.40.10 25 427 1.5E-151 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_06215 4341d1d1a392ca46b6078afbc9aa2b55 439 SUPERFAMILY SSF51556 64 363 1.02E-95 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_06215 4341d1d1a392ca46b6078afbc9aa2b55 439 SUPERFAMILY SSF51338 8 436 6.86E-22 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_16295 eae6f3993d84deb278ae5439a7007349 322 SUPERFAMILY SSF46785 6 59 5.55E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_16295 eae6f3993d84deb278ae5439a7007349 322 Pfam PF08279 HTH domain 7 58 9.1E-11 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 R615_16295 eae6f3993d84deb278ae5439a7007349 322 SUPERFAMILY SSF50037 273 319 1.33E-8 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal R615_16295 eae6f3993d84deb278ae5439a7007349 322 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 88 317 2.5E-58 T 12-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_16295 eae6f3993d84deb278ae5439a7007349 322 Gene3D G3DSA:3.30.930.10 66 272 7.3E-61 T 12-10-2018 R615_16295 eae6f3993d84deb278ae5439a7007349 322 Pfam PF03099 Biotin/lipoate A/B protein ligase family 89 210 5.1E-17 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 R615_16295 eae6f3993d84deb278ae5439a7007349 322 SUPERFAMILY SSF55681 84 271 5.1E-55 T 12-10-2018 R615_16295 eae6f3993d84deb278ae5439a7007349 322 Gene3D G3DSA:1.10.10.10 4 63 4.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16295 eae6f3993d84deb278ae5439a7007349 322 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 8 319 30.97 T 12-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 R615_16295 eae6f3993d84deb278ae5439a7007349 322 Gene3D G3DSA:2.30.30.100 273 322 1.6E-12 T 12-10-2018 R615_16295 eae6f3993d84deb278ae5439a7007349 322 Pfam PF02237 Biotin protein ligase C terminal domain 275 318 1.2E-4 T 12-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 R615_06210 6a7043aa2840d86d6565c853d53d6889 246 SUPERFAMILY SSF53335 1 221 3.22E-47 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_06210 6a7043aa2840d86d6565c853d53d6889 246 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 18 242 36.669 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 R615_06210 6a7043aa2840d86d6565c853d53d6889 246 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 18 236 7.1E-85 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 R615_06210 6a7043aa2840d86d6565c853d53d6889 246 Pfam PF13489 Methyltransferase domain 57 211 7.3E-26 T 12-10-2018 R615_06210 6a7043aa2840d86d6565c853d53d6889 246 Gene3D G3DSA:3.40.50.150 18 242 4.0E-75 T 12-10-2018 R615_09545 35120da65569c2e101e1b32b878f29a4 643 SUPERFAMILY SSF48452 58 298 1.27E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_00380 8290dc5e5aa5056db3d2d229d83a28b8 225 SUPERFAMILY SSF52540 23 201 2.66E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00380 8290dc5e5aa5056db3d2d229d83a28b8 225 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 17 201 27.746 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 R615_00380 8290dc5e5aa5056db3d2d229d83a28b8 225 Pfam PF01926 50S ribosome-binding GTPase 31 150 3.4E-19 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_00380 8290dc5e5aa5056db3d2d229d83a28b8 225 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 14 197 6.8E-72 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 R615_00380 8290dc5e5aa5056db3d2d229d83a28b8 225 Gene3D G3DSA:3.40.50.300 5 203 3.6E-51 T 12-10-2018 R615_09635 5826a620b32ad5887a645b402403755f 546 Gene3D G3DSA:3.40.50.2300 21 166 1.4E-16 T 12-10-2018 R615_09635 5826a620b32ad5887a645b402403755f 546 SUPERFAMILY SSF47384 165 244 2.55E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_09635 5826a620b32ad5887a645b402403755f 546 SUPERFAMILY SSF55874 232 408 3.01E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_09635 5826a620b32ad5887a645b402403755f 546 SMART SM00388 178 243 5.3E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_09635 5826a620b32ad5887a645b402403755f 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 345 1.5E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_09635 5826a620b32ad5887a645b402403755f 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 1.5E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_09635 5826a620b32ad5887a645b402403755f 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 1.5E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_09635 5826a620b32ad5887a645b402403755f 546 SUPERFAMILY SSF52172 416 543 4.7E-30 T 12-10-2018 IPR011006 CheY-like superfamily R615_09635 5826a620b32ad5887a645b402403755f 546 SUPERFAMILY SSF52172 18 176 6.26E-16 T 12-10-2018 IPR011006 CheY-like superfamily R615_09635 5826a620b32ad5887a645b402403755f 546 Gene3D G3DSA:3.30.565.10 244 409 1.7E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_09635 5826a620b32ad5887a645b402403755f 546 Pfam PF00512 His Kinase A (phospho-acceptor) domain 178 243 2.0E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_09635 5826a620b32ad5887a645b402403755f 546 Gene3D G3DSA:3.40.50.12740 423 546 1.4E-30 T 12-10-2018 R615_09635 5826a620b32ad5887a645b402403755f 546 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 405 2.1E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_09635 5826a620b32ad5887a645b402403755f 546 Gene3D G3DSA:1.10.287.130 167 243 5.8E-20 T 12-10-2018 R615_09635 5826a620b32ad5887a645b402403755f 546 SMART SM00448 20 142 1.1E-7 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_09635 5826a620b32ad5887a645b402403755f 546 SMART SM00448 423 534 1.2E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_09635 5826a620b32ad5887a645b402403755f 546 Pfam PF00072 Response regulator receiver domain 22 132 1.4E-9 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_09635 5826a620b32ad5887a645b402403755f 546 Pfam PF00072 Response regulator receiver domain 425 534 9.0E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_09635 5826a620b32ad5887a645b402403755f 546 SMART SM00387 290 406 1.9E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 5.8E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 5.8E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 5.8E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 Gene3D G3DSA:3.40.50.1000 7 202 1.6E-49 T 12-10-2018 IPR023214 HAD superfamily R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 Gene3D G3DSA:1.10.150.240 18 84 1.6E-49 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 SUPERFAMILY SSF56784 2 207 6.54E-47 T 12-10-2018 IPR036412 HAD-like superfamily R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 106 177 1.8E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_14955 f35e79a7e2c8feeb6c883d3241b50d0b 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 2.1E-29 T 12-10-2018 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 SMART SM00841 130 185 5.9E-24 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 PIRSF PIRSF005901 1 187 3.3E-57 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Gene3D G3DSA:2.40.50.140 129 188 3.2E-24 T 12-10-2018 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 5.2E-19 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 SMART SM01185 67 122 7.7E-19 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 SUPERFAMILY SSF50249 130 186 1.58E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 186 2.8E-62 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Pfam PF09285 Elongation factor P, C-terminal 130 185 3.4E-20 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Gene3D G3DSA:2.30.30.30 1 63 2.7E-21 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 122 5.6E-16 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Hamap MF_00141 Elongation factor P [efp]. 1 186 46.398 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 SUPERFAMILY SSF50104 1 62 1.5E-16 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 SUPERFAMILY SSF50249 65 128 1.11E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12575 cc7ea07f1650031c73a458a98603f0a8 188 Gene3D G3DSA:2.40.50.140 64 128 2.4E-22 T 12-10-2018 R615_10570 eea846a657a8a596cee685473fce8665 706 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 516 669 1.4E-42 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_10570 eea846a657a8a596cee685473fce8665 706 Gene3D G3DSA:3.30.450.20 62 329 5.0E-37 T 12-10-2018 R615_10570 eea846a657a8a596cee685473fce8665 706 Gene3D G3DSA:1.10.287.950 374 706 8.9E-67 T 12-10-2018 R615_10570 eea846a657a8a596cee685473fce8665 706 SUPERFAMILY SSF58104 397 705 4.97E-71 T 12-10-2018 R615_10570 eea846a657a8a596cee685473fce8665 706 Pfam PF02743 Cache domain 48 326 1.8E-18 T 12-10-2018 IPR033479 Double Cache domain 1 R615_10570 eea846a657a8a596cee685473fce8665 706 Gene3D G3DSA:3.30.450.20 73 235 5.0E-37 T 12-10-2018 R615_10570 eea846a657a8a596cee685473fce8665 706 SMART SM00283 444 705 8.4E-66 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_10570 eea846a657a8a596cee685473fce8665 706 SMART SM00304 375 429 4.0E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 SMART SM00283 277 538 2.5E-77 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 184 204 6.0E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 6.0E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 6.0E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 SUPERFAMILY SSF58104 230 539 8.76E-78 T 12-10-2018 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 SMART SM00304 208 262 2.1E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 Gene3D G3DSA:1.10.287.950 207 539 3.3E-72 T 12-10-2018 R615_08695 8513250f9dce3e688a8313e8ea73f8fd 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 502 7.8E-44 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_12760 df44bdca152380d5a81c1f1675cd438d 213 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 170 5.9E-15 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 R615_12760 df44bdca152380d5a81c1f1675cd438d 213 SUPERFAMILY SSF57863 77 167 3.92E-11 T 12-10-2018 IPR037278 ARFGAP/RecO-like zinc finger R615_12760 df44bdca152380d5a81c1f1675cd438d 213 Pfam PF02565 Recombination protein O C terminal 74 206 1.1E-17 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 R615_12760 df44bdca152380d5a81c1f1675cd438d 213 Gene3D G3DSA:1.20.1440.120 71 213 7.0E-40 T 12-10-2018 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Hamap MF_00195 GTPase Der [der]. 2 451 37.356 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Gene3D G3DSA:3.40.50.300 189 363 1.6E-48 T 12-10-2018 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Pfam PF01926 50S ribosome-binding GTPase 194 312 4.1E-23 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Pfam PF01926 50S ribosome-binding GTPase 5 119 4.4E-25 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Gene3D G3DSA:3.40.50.300 2 162 2.0E-39 T 12-10-2018 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 SUPERFAMILY SSF52540 4 172 5.87E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Gene3D G3DSA:3.30.300.20 368 450 2.3E-21 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 448 3.5E-172 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 SUPERFAMILY SSF52540 137 455 1.71E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 158 1.6E-20 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 191 357 3.2E-21 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 369 448 2.0E-26 T 12-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 4.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12610 3af39a38f68ed2d7118fe75cc19056f7 499 PIRSF PIRSF006485 1 456 6.9E-171 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 Gene3D G3DSA:3.40.1690.10 217 358 7.7E-59 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal R615_05220 369570ea5e62af9008af45ffb80f6a67 381 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 351 1.8E-126 T 12-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 1.2E-128 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 SUPERFAMILY SSF160544 244 351 1.29E-41 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal R615_05220 369570ea5e62af9008af45ffb80f6a67 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 4.5E-40 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 4.5E-40 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 4.5E-40 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 4.5E-40 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_05220 369570ea5e62af9008af45ffb80f6a67 381 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 4.5E-40 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 Pfam PF00920 Dehydratase family 68 601 9.8E-152 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 2 604 2.6E-279 T 12-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 Gene3D G3DSA:3.50.30.80 421 568 5.1E-45 T 12-10-2018 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 SUPERFAMILY SSF143975 1 420 1.44E-136 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 SUPERFAMILY SSF52016 421 603 2.51E-50 T 12-10-2018 R615_07090 f8cf35ba594d323f7cce0fdeaa36d580 607 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 605 54.931 T 12-10-2018 R615_06320 520b53a79568d81f5582a6fee96d6f42 374 SUPERFAMILY SSF53756 24 370 2.98E-45 T 12-10-2018 R615_06320 520b53a79568d81f5582a6fee96d6f42 374 Gene3D G3DSA:3.40.50.2000 173 352 2.1E-26 T 12-10-2018 R615_06320 520b53a79568d81f5582a6fee96d6f42 374 Pfam PF00534 Glycosyl transferases group 1 187 345 3.6E-21 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 R615_06320 520b53a79568d81f5582a6fee96d6f42 374 Gene3D G3DSA:3.40.50.2000 19 172 7.6E-9 T 12-10-2018 R615_06320 520b53a79568d81f5582a6fee96d6f42 374 Pfam PF13439 Glycosyltransferase Family 4 26 163 4.8E-9 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 SMART SM00448 2 115 2.9E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.4E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.4E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.4E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 3.2E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 SUPERFAMILY SSF52172 2 132 6.69E-35 T 12-10-2018 IPR011006 CheY-like superfamily R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 SMART SM00421 146 203 8.4E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 SUPERFAMILY SSF46894 135 210 1.6E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 Pfam PF00072 Response regulator receiver domain 4 115 1.1E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_08740 73ca631ded94b2a6d9337cebce9a78f3 215 Gene3D G3DSA:3.40.50.12740 2 209 3.3E-63 T 12-10-2018 R615_02705 6c6c50fd4c4692471e0f7a212c0ca72f 321 Pfam PF01544 CorA-like Mg2+ transporter protein 29 317 7.6E-60 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 R615_02705 6c6c50fd4c4692471e0f7a212c0ca72f 321 SUPERFAMILY SSF143865 1 254 7.06E-37 T 12-10-2018 R615_02705 6c6c50fd4c4692471e0f7a212c0ca72f 321 SUPERFAMILY SSF144083 256 318 1.7E-19 T 12-10-2018 R615_02705 6c6c50fd4c4692471e0f7a212c0ca72f 321 Gene3D G3DSA:1.20.58.340 244 321 2.2E-28 T 12-10-2018 R615_02705 6c6c50fd4c4692471e0f7a212c0ca72f 321 Gene3D G3DSA:3.30.460.20 9 125 5.1E-15 T 12-10-2018 R615_02705 6c6c50fd4c4692471e0f7a212c0ca72f 321 Gene3D G3DSA:1.20.58.340 126 242 8.3E-10 T 12-10-2018 R615_09600 9d4513ac5136da459ac485338a4b843a 94 Hamap MF_01866 Protein YcgL [ycgL]. 4 91 26.199 T 12-10-2018 IPR027354 YcgL domain R615_09600 9d4513ac5136da459ac485338a4b843a 94 Gene3D G3DSA:3.10.510.20 2 77 9.1E-32 T 12-10-2018 IPR038068 YcgL-like superfamily R615_09600 9d4513ac5136da459ac485338a4b843a 94 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 5 81 2.0E-19 T 12-10-2018 IPR027354 YcgL domain R615_09600 9d4513ac5136da459ac485338a4b843a 94 SUPERFAMILY SSF160191 2 89 4.32E-37 T 12-10-2018 IPR038068 YcgL-like superfamily R615_09600 9d4513ac5136da459ac485338a4b843a 94 Pfam PF05166 YcgL domain 6 78 1.6E-32 T 12-10-2018 IPR027354 YcgL domain R615_05345 75da616a2b706dbdef6328836c96b621 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 442 1.2E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05345 75da616a2b706dbdef6328836c96b621 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 1.2E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05345 75da616a2b706dbdef6328836c96b621 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 1.2E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05345 75da616a2b706dbdef6328836c96b621 506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 501 1.2E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05345 75da616a2b706dbdef6328836c96b621 506 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 396 502 5.5E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05345 75da616a2b706dbdef6328836c96b621 506 SMART SM00387 393 504 3.4E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05345 75da616a2b706dbdef6328836c96b621 506 SUPERFAMILY SSF47384 265 348 2.94E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_05345 75da616a2b706dbdef6328836c96b621 506 SUPERFAMILY SSF55874 337 503 1.83E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05345 75da616a2b706dbdef6328836c96b621 506 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 348 5.4E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05345 75da616a2b706dbdef6328836c96b621 506 SMART SM00388 282 348 2.4E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05345 75da616a2b706dbdef6328836c96b621 506 SUPERFAMILY SSF158472 234 280 6.93E-7 T 12-10-2018 R615_05345 75da616a2b706dbdef6328836c96b621 506 Pfam PF00672 HAMP domain 234 278 1.7E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_05345 75da616a2b706dbdef6328836c96b621 506 SMART SM00304 229 281 1.5E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_05345 75da616a2b706dbdef6328836c96b621 506 Gene3D G3DSA:1.10.287.130 234 348 1.0E-27 T 12-10-2018 R615_05345 75da616a2b706dbdef6328836c96b621 506 Gene3D G3DSA:3.30.565.10 353 505 7.6E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_16430 72f429d4bec0d4e2f59339521a89b1c0 178 Pfam PF07484 Phage Tail Collar Domain 7 62 5.9E-25 T 12-10-2018 IPR011083 Phage tail collar domain R615_16430 72f429d4bec0d4e2f59339521a89b1c0 178 SUPERFAMILY SSF88874 1 172 5.89E-46 T 12-10-2018 R615_16430 72f429d4bec0d4e2f59339521a89b1c0 178 Gene3D G3DSA:4.10.1070.10 60 163 3.0E-14 T 12-10-2018 R615_16430 72f429d4bec0d4e2f59339521a89b1c0 178 Gene3D G3DSA:3.90.1340.10 6 168 3.0E-14 T 12-10-2018 IPR037053 Phage tail collar domain superfamily R615_03510 df5713f2c61951afe64ac5f229558292 106 Pfam PF00462 Glutaredoxin 16 80 3.2E-16 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 R615_03510 df5713f2c61951afe64ac5f229558292 106 Gene3D G3DSA:3.40.30.10 6 102 5.5E-30 T 12-10-2018 R615_03510 df5713f2c61951afe64ac5f229558292 106 SUPERFAMILY SSF52833 1 102 5.36E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_03510 df5713f2c61951afe64ac5f229558292 106 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 1.5E-44 T 12-10-2018 IPR004480 Monothiol glutaredoxin-related R615_03510 df5713f2c61951afe64ac5f229558292 106 PIRSF PIRSF005894 1 106 3.3E-48 T 12-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 R615_11755 72ad436ba86ed291591537d0d904efba 460 Pfam PF07044 Protein of unknown function (DUF1329) 84 455 4.2E-149 T 12-10-2018 IPR010752 Protein of unknown function DUF1329 R615_12315 0b11361161690c589d6665bac5af9cdb 235 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 125 153 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_12315 0b11361161690c589d6665bac5af9cdb 235 SUPERFAMILY SSF51735 3 226 7.78E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_12315 0b11361161690c589d6665bac5af9cdb 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12315 0b11361161690c589d6665bac5af9cdb 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12315 0b11361161690c589d6665bac5af9cdb 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12315 0b11361161690c589d6665bac5af9cdb 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 157 2.6E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12315 0b11361161690c589d6665bac5af9cdb 235 Gene3D G3DSA:3.40.50.720 2 227 2.1E-36 T 12-10-2018 R615_12315 0b11361161690c589d6665bac5af9cdb 235 Pfam PF00106 short chain dehydrogenase 3 171 2.3E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00065 156 302 0.0098 T 12-10-2018 IPR003018 GAF domain GO:0005515 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF00072 Response regulator receiver domain 812 927 5.5E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF00072 Response regulator receiver domain 962 1079 7.4E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.30.450.20 7 131 6.0E-29 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 PRINTS PR00344 Bacterial sensor protein C-terminal signature 778 791 5.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 PRINTS PR00344 Bacterial sensor protein C-terminal signature 754 772 5.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 PRINTS PR00344 Bacterial sensor protein C-terminal signature 719 733 5.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 PRINTS PR00344 Bacterial sensor protein C-terminal signature 737 747 5.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:1.20.120.160 1116 1217 3.5E-19 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00448 960 1079 3.0E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00448 810 929 1.3E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00073 1124 1218 4.8E-5 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00086 380 421 7.1 T 12-10-2018 IPR001610 PAC motif R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00086 94 136 1.2E-9 T 12-10-2018 IPR001610 PAC motif R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF52172 809 933 2.56E-21 T 12-10-2018 IPR011006 CheY-like superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00388 566 631 8.2E-22 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF55785 314 424 2.62E-13 T 12-10-2018 IPR035965 PAS domain superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.40.50.2300 806 934 3.5E-22 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.40.50.2300 948 1081 4.4E-42 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00091 306 374 11.0 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00091 433 498 0.094 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00091 22 89 5.0E-4 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF55874 620 791 7.6E-42 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.30.565.10 632 796 2.3E-47 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.30.450.20 302 374 6.5E-11 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SMART SM00387 678 794 3.8E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF55785 418 544 4.01E-9 T 12-10-2018 IPR035965 PAS domain superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF55785 33 133 6.11E-27 T 12-10-2018 IPR035965 PAS domain superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF52172 957 1083 6.55E-38 T 12-10-2018 IPR011006 CheY-like superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 679 792 3.7E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF01627 Hpt domain 1134 1206 2.4E-11 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF00512 His Kinase A (phospho-acceptor) domain 566 630 5.6E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF47226 1062 1210 9.03E-22 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.30.450.40 132 297 7.1E-9 T 12-10-2018 IPR029016 GAF-like domain superfamily R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 430 553 2.3E-7 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 33 141 3.2E-17 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:2.10.70.100 377 422 1.7E-5 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF47384 552 632 2.55E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF01590 GAF domain 142 289 3.1E-6 T 12-10-2018 IPR003018 GAF domain GO:0005515 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF13426 PAS domain 36 135 1.1E-14 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF13426 PAS domain 443 545 0.12 T 12-10-2018 IPR000014 PAS domain R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:1.10.287.130 543 629 2.1E-26 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 SUPERFAMILY SSF55781 160 303 4.32E-12 T 12-10-2018 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Pfam PF08447 PAS fold 329 413 2.2E-7 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 R615_07820 e9e7732a92816d8b1ee17feff6d58314 1312 Gene3D G3DSA:3.30.450.20 423 542 1.0E-14 T 12-10-2018 R615_08625 9e17278c92bfa0632ecadb43329ad78a 742 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 12-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 R615_08625 9e17278c92bfa0632ecadb43329ad78a 742 SUPERFAMILY SSF53659 6 741 0.0 T 12-10-2018 R615_08625 9e17278c92bfa0632ecadb43329ad78a 742 Gene3D G3DSA:3.40.718.10 147 319 5.5E-6 T 12-10-2018 R615_08625 9e17278c92bfa0632ecadb43329ad78a 742 Gene3D G3DSA:3.40.718.10 392 650 5.1E-9 T 12-10-2018 R615_08625 9e17278c92bfa0632ecadb43329ad78a 742 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 740 0.0 T 12-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 R615_08625 9e17278c92bfa0632ecadb43329ad78a 742 PIRSF PIRSF009407 1 742 0.0 T 12-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 R615_17335 826db81208e4943c3c458cd1bb9b768a 299 SUPERFAMILY SSF81336 114 293 3.66E-39 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17335 826db81208e4943c3c458cd1bb9b768a 299 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 59 294 1.2E-41 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17335 826db81208e4943c3c458cd1bb9b768a 299 ProSitePatterns PS00449 ATP synthase a subunit signature. 229 238 - T 12-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17335 826db81208e4943c3c458cd1bb9b768a 299 Hamap MF_01393 ATP synthase subunit a [atpB]. 9 299 15.201 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17335 826db81208e4943c3c458cd1bb9b768a 299 Gene3D G3DSA:1.20.120.220 113 299 1.8E-53 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17335 826db81208e4943c3c458cd1bb9b768a 299 Pfam PF00119 ATP synthase A chain 67 293 1.1E-54 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_13250 7171105cccee2713c99d1574acd58f71 173 SUPERFAMILY SSF89392 10 171 3.92E-38 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX R615_13250 7171105cccee2713c99d1574acd58f71 173 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 10 170 3.5E-35 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 R615_13250 7171105cccee2713c99d1574acd58f71 173 Gene3D G3DSA:2.50.20.10 3 172 4.2E-44 T 12-10-2018 R615_13250 7171105cccee2713c99d1574acd58f71 173 Pfam PF03550 Outer membrane lipoprotein LolB 17 169 9.5E-42 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 R615_15840 e4e102760d2aa9b162600fe5f5c84d4e 210 Gene3D G3DSA:3.40.30.10 41 208 1.4E-45 T 12-10-2018 R615_15840 e4e102760d2aa9b162600fe5f5c84d4e 210 SUPERFAMILY SSF52833 47 206 8.31E-43 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_15840 e4e102760d2aa9b162600fe5f5c84d4e 210 Pfam PF02630 SCO1/SenC 54 185 3.4E-32 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 SUPERFAMILY SSF47413 1 58 7.87E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 Gene3D G3DSA:3.20.20.70 82 431 7.6E-147 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 SUPERFAMILY SSF51569 88 428 3.66E-126 T 12-10-2018 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 Pfam PF14549 DNA-binding transcriptional regulator Cro 2 61 1.4E-11 T 12-10-2018 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 Gene3D G3DSA:1.10.260.40 1 65 1.1E-14 T 12-10-2018 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 Pfam PF00793 DAHP synthetase I family 125 419 3.0E-88 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 R615_09470 363819f2a0287e707407d54e6ad42bfb 438 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 87 429 1.9E-147 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 R615_08110 0a9c25385b434f7e47acf4bf73fd951e 186 SUPERFAMILY SSF56784 12 166 1.16E-37 T 12-10-2018 IPR036412 HAD-like superfamily R615_08110 0a9c25385b434f7e47acf4bf73fd951e 186 Gene3D G3DSA:3.40.50.1000 1 176 3.2E-49 T 12-10-2018 IPR023214 HAD superfamily R615_08110 0a9c25385b434f7e47acf4bf73fd951e 186 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 15 164 2.6E-49 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 R615_08110 0a9c25385b434f7e47acf4bf73fd951e 186 PIRSF PIRSF006118 2 177 3.6E-61 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 R615_08110 0a9c25385b434f7e47acf4bf73fd951e 186 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 16 128 1.9E-12 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 R615_08110 0a9c25385b434f7e47acf4bf73fd951e 186 Pfam PF08282 haloacid dehalogenase-like hydrolase 83 157 4.8E-6 T 12-10-2018 R615_14285 15a9ac0498c82123abfef6c03ba37676 226 Gene3D G3DSA:3.30.1330.60 60 226 6.8E-41 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_14285 15a9ac0498c82123abfef6c03ba37676 226 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 19 62 2.9E-14 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain R615_14285 15a9ac0498c82123abfef6c03ba37676 226 SUPERFAMILY SSF103088 100 223 1.7E-23 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_14285 15a9ac0498c82123abfef6c03ba37676 226 Pfam PF00691 OmpA family 112 207 5.3E-17 T 12-10-2018 IPR006665 OmpA-like domain R615_04295 776ae4306210a1cdc669fd3a81c1bbad 223 Gene3D G3DSA:3.40.30.10 2 205 4.8E-81 T 12-10-2018 R615_04295 776ae4306210a1cdc669fd3a81c1bbad 223 SUPERFAMILY SSF52833 1 80 4.49E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_04295 776ae4306210a1cdc669fd3a81c1bbad 223 SUPERFAMILY SSF47616 74 202 3.48E-34 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_04295 776ae4306210a1cdc669fd3a81c1bbad 223 Gene3D G3DSA:1.20.1050.10 84 195 4.8E-81 T 12-10-2018 R615_04295 776ae4306210a1cdc669fd3a81c1bbad 223 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 77 2.2E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_04295 776ae4306210a1cdc669fd3a81c1bbad 223 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 196 7.3E-9 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal R615_12700 da5f784d1e9df502f397827f0cfa8c89 265 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 264 16.878 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 R615_12700 da5f784d1e9df502f397827f0cfa8c89 265 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 257 3.8E-68 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 R615_12700 da5f784d1e9df502f397827f0cfa8c89 265 Pfam PF02673 Bacitracin resistance protein BacA 7 258 7.7E-78 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Pfam PF13174 Tetratricopeptide repeat 131 161 1.7E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Pfam PF13174 Tetratricopeptide repeat 627 658 0.11 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Gene3D G3DSA:1.25.40.10 130 352 1.8E-20 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SMART SM00028 128 161 29.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SMART SM00028 165 198 3.2 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SMART SM00028 625 658 340.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SMART SM00028 423 456 5.4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SUPERFAMILY SSF48452 549 681 4.02E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Gene3D G3DSA:1.25.40.10 688 783 1.3E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Gene3D G3DSA:1.25.40.10 390 487 6.1E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Pfam PF13432 Tetratricopeptide repeat 400 448 1.6E-4 T 12-10-2018 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Pfam PF13432 Tetratricopeptide repeat 170 237 5.1E-5 T 12-10-2018 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 Gene3D G3DSA:1.25.40.10 491 687 6.3E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SUPERFAMILY SSF48452 399 563 3.87E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09540 ee9364ded7acc3c68693f3f05242681a 935 SUPERFAMILY SSF48452 110 228 5.82E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Gene3D G3DSA:3.40.50.880 9 207 7.0E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 SUPERFAMILY SSF52317 5 205 1.43E-55 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.3E-5 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 PRINTS PR00097 Anthranilate synthase component II signature 178 191 1.3E-5 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.3E-5 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 206 7.8E-77 T 12-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 SUPERFAMILY SSF54810 406 526 2.62E-50 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Gene3D G3DSA:3.40.50.620 210 406 3.1E-76 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Pfam PF00117 Glutamine amidotransferase class-I 12 201 3.3E-38 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 526 55.684 T 12-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 214 526 3.7E-150 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 9.8E-7 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 9.8E-7 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 178 191 9.8E-7 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Pfam PF00958 GMP synthase C terminal domain 434 525 2.2E-41 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Pfam PF02540 NAD synthase 217 295 3.6E-8 T 12-10-2018 IPR022310 NAD/GMP synthase R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 SUPERFAMILY SSF52402 198 421 1.87E-57 T 12-10-2018 R615_11145 a49fdb24157cbee217a39a15b6244dc0 526 Gene3D G3DSA:3.30.300.10 407 526 1.4E-50 T 12-10-2018 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 Pfam PF04542 Sigma-70 region 2 20 92 2.4E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 Gene3D G3DSA:1.20.140.160 91 240 4.3E-44 T 12-10-2018 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 238 1.6E-33 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 Gene3D G3DSA:1.10.1740.10 7 89 4.9E-29 T 12-10-2018 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 SUPERFAMILY SSF88659 164 241 4.3E-21 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 20 238 6.5E-81 T 12-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 PRINTS PR00046 Major sigma-70 factor signature 191 203 1.4E-11 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 PRINTS PR00046 Major sigma-70 factor signature 47 60 1.4E-11 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 PRINTS PR00046 Major sigma-70 factor signature 208 223 1.4E-11 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 PRINTS PR00046 Major sigma-70 factor signature 223 234 1.4E-11 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 Pfam PF04545 Sigma-70, region 4 187 235 2.5E-18 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 Pfam PF04539 Sigma-70 region 3 101 155 1.7E-9 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 SUPERFAMILY SSF88659 94 160 5.67E-13 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 SUPERFAMILY SSF88946 16 92 4.58E-25 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 6 241 65.826 T 12-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 R615_05245 a448305fd74ecce49f4ecddb6786b66c 244 PIRSF PIRSF000770 7 243 2.4E-38 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_14410 d004fbd36f087178c91d7d41865135c1 327 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 323 6.8E-127 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 R615_14410 d004fbd36f087178c91d7d41865135c1 327 SUPERFAMILY SSF53659 3 326 9.92E-110 T 12-10-2018 R615_14410 d004fbd36f087178c91d7d41865135c1 327 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 326 36.151 T 12-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 R615_14410 d004fbd36f087178c91d7d41865135c1 327 Gene3D G3DSA:3.40.718.10 1 327 1.8E-124 T 12-10-2018 R615_14410 d004fbd36f087178c91d7d41865135c1 327 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 31 319 5.7E-107 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 Pfam PF03466 LysR substrate binding domain 90 289 7.9E-38 T 12-10-2018 IPR005119 LysR, substrate-binding R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 SUPERFAMILY SSF46785 1 83 1.62E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.3E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 Gene3D G3DSA:1.10.10.10 1 90 5.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 SUPERFAMILY SSF53850 88 289 8.31E-35 T 12-10-2018 R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 Gene3D G3DSA:3.40.190.10 165 265 3.3E-30 T 12-10-2018 R615_15350 5dc0d431d34dbc98a008c8269b80f01c 291 Gene3D G3DSA:3.40.190.10 91 286 3.3E-30 T 12-10-2018 R615_05470 5701a627b5d889ccaded24806d308bfa 243 PIRSF PIRSF005650 4 243 3.5E-89 T 12-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 R615_05470 5701a627b5d889ccaded24806d308bfa 243 Gene3D G3DSA:3.40.1160.10 2 243 2.0E-75 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_05470 5701a627b5d889ccaded24806d308bfa 243 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.358 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 R615_05470 5701a627b5d889ccaded24806d308bfa 243 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 239 1.5E-98 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 R615_05470 5701a627b5d889ccaded24806d308bfa 243 Pfam PF00696 Amino acid kinase family 10 218 7.2E-29 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 R615_05470 5701a627b5d889ccaded24806d308bfa 243 SUPERFAMILY SSF53633 7 239 1.57E-69 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 Gene3D G3DSA:3.30.428.10 1 114 4.4E-41 T 12-10-2018 IPR036265 HIT-like superfamily R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 SUPERFAMILY SSF54197 1 113 7.11E-39 T 12-10-2018 IPR036265 HIT-like superfamily R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 Pfam PF01230 HIT domain 12 108 1.7E-29 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 12-10-2018 IPR019808 Histidine triad, conserved site R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 PRINTS PR00332 Histidine triad family signature 94 104 1.4E-17 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 PRINTS PR00332 Histidine triad family signature 6 22 1.4E-17 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_15295 8c51e25e2bf6883bc8d94ac470fd745c 114 PRINTS PR00332 Histidine triad family signature 27 45 1.4E-17 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_00430 8eb50e76c019a59f3eb333ad7e3305e0 285 Gene3D G3DSA:3.90.1200.10 109 278 6.5E-23 T 12-10-2018 R615_00430 8eb50e76c019a59f3eb333ad7e3305e0 285 Pfam PF01636 Phosphotransferase enzyme family 33 226 5.0E-25 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase R615_00430 8eb50e76c019a59f3eb333ad7e3305e0 285 Gene3D G3DSA:3.30.200.20 8 99 7.3E-11 T 12-10-2018 R615_00430 8eb50e76c019a59f3eb333ad7e3305e0 285 SUPERFAMILY SSF56112 27 236 1.12E-33 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_07190 2cf298bbe98172ec5231ab9b4ad362f6 502 SUPERFAMILY SSF51391 305 483 3.66E-46 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 R615_07190 2cf298bbe98172ec5231ab9b4ad362f6 502 Gene3D G3DSA:3.40.1190.20 3 279 3.1E-57 T 12-10-2018 IPR029056 Ribokinase-like R615_07190 2cf298bbe98172ec5231ab9b4ad362f6 502 Pfam PF02581 Thiamine monophosphate synthase 315 482 1.9E-41 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 R615_07190 2cf298bbe98172ec5231ab9b4ad362f6 502 Gene3D G3DSA:3.20.20.70 292 495 7.6E-45 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_07190 2cf298bbe98172ec5231ab9b4ad362f6 502 Pfam PF08543 Phosphomethylpyrimidine kinase 20 268 1.1E-41 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 R615_07190 2cf298bbe98172ec5231ab9b4ad362f6 502 SUPERFAMILY SSF53613 10 268 4.37E-45 T 12-10-2018 IPR029056 Ribokinase-like R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 SUPERFAMILY SSF55874 345 502 3.14E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 452 4.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 490 503 4.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 4.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 466 4.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 SMART SM00388 290 356 1.3E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 SUPERFAMILY SSF47384 281 352 1.08E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 SMART SM00387 397 505 1.1E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 Gene3D G3DSA:1.10.287.130 278 354 9.3E-17 T 12-10-2018 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 Gene3D G3DSA:3.30.565.10 358 505 7.0E-25 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 SUPERFAMILY SSF55785 189 229 4.19E-5 T 12-10-2018 IPR035965 PAS domain superfamily R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 Gene3D G3DSA:3.30.450.20 181 233 1.6E-5 T 12-10-2018 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 Pfam PF00512 His Kinase A (phospho-acceptor) domain 290 353 3.8E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_03355 0c69afd3ede8e499d0c20596d9420e2b 505 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 398 503 9.5E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_08315 44258da39fe83bcec8bd64f3b2c941b1 334 Pfam PF07995 Glucose / Sorbosone dehydrogenase 5 330 7.7E-104 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase R615_08315 44258da39fe83bcec8bd64f3b2c941b1 334 SUPERFAMILY SSF50952 2 328 7.32E-27 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 R615_08315 44258da39fe83bcec8bd64f3b2c941b1 334 Gene3D G3DSA:2.120.10.30 1 334 1.5E-89 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_12995 06432c57428f5b2fa3968e0ecaff843c 261 Gene3D G3DSA:3.10.620.30 71 251 5.0E-26 T 12-10-2018 R615_12995 06432c57428f5b2fa3968e0ecaff843c 261 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 1.3E-18 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal R615_12995 06432c57428f5b2fa3968e0ecaff843c 261 SUPERFAMILY SSF54001 6 241 3.5E-26 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_12995 06432c57428f5b2fa3968e0ecaff843c 261 SMART SM00460 154 216 6.9E-7 T 12-10-2018 IPR002931 Transglutaminase-like R615_12995 06432c57428f5b2fa3968e0ecaff843c 261 Pfam PF01841 Transglutaminase-like superfamily 138 213 9.1E-14 T 12-10-2018 IPR002931 Transglutaminase-like R615_15835 acc5cc3b4a6a96b87be6e651b1f27102 268 Pfam PF00950 ABC 3 transport family 13 259 8.9E-69 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 R615_15835 acc5cc3b4a6a96b87be6e651b1f27102 268 Gene3D G3DSA:1.10.3470.10 38 263 7.6E-7 T 12-10-2018 IPR037294 ABC transporter, BtuC-like R615_15835 acc5cc3b4a6a96b87be6e651b1f27102 268 SUPERFAMILY SSF81345 6 257 3.14E-35 T 12-10-2018 IPR037294 ABC transporter, BtuC-like R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 SUPERFAMILY SSF54111 1 99 1.44E-45 T 12-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 PIRSF PIRSF001223 1 100 5.2E-49 T 12-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.622 T 12-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 2.5E-49 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 Pfam PF00547 Urease, gamma subunit 1 99 8.1E-47 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 Gene3D G3DSA:3.30.280.10 1 100 1.2E-47 T 12-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12540 f144dfcbdec2a6956151c3cc25610b61 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-38 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Pfam PF02978 Signal peptide binding domain 329 428 1.7E-32 T 12-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 SMART SM00963 1 86 3.7E-35 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 SMART SM00962 100 296 1.6E-115 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.7E-21 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Gene3D G3DSA:3.40.50.300 90 285 4.3E-120 T 12-10-2018 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 430 7.6E-177 T 12-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 SUPERFAMILY SSF47446 298 431 1.06E-43 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 SMART SM00382 99 247 2.8E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 441 33.564 T 12-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Gene3D G3DSA:1.10.260.30 328 455 7.9E-42 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Gene3D G3DSA:1.20.120.140 5 305 4.3E-120 T 12-10-2018 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 Pfam PF00448 SRP54-type protein, GTPase domain 100 295 1.3E-74 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 SUPERFAMILY SSF52540 42 352 3.99E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12515 7c7d8e552971d9f63f70a9dc008fbe88 463 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_00670 666f56b615007885037bedae319fed3d 219 PRINTS PR00344 Bacterial sensor protein C-terminal signature 146 160 6.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00670 666f56b615007885037bedae319fed3d 219 PRINTS PR00344 Bacterial sensor protein C-terminal signature 206 219 6.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00670 666f56b615007885037bedae319fed3d 219 PRINTS PR00344 Bacterial sensor protein C-terminal signature 177 195 6.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00670 666f56b615007885037bedae319fed3d 219 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 111 219 6.0E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00670 666f56b615007885037bedae319fed3d 219 SUPERFAMILY SSF55874 75 219 1.44E-19 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00670 666f56b615007885037bedae319fed3d 219 Gene3D G3DSA:3.30.565.10 64 219 1.2E-20 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00670 666f56b615007885037bedae319fed3d 219 SMART SM00387 108 219 7.5E-7 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00670 666f56b615007885037bedae319fed3d 219 Gene3D G3DSA:1.10.287.130 6 63 1.2E-20 T 12-10-2018 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 Gene3D G3DSA:1.10.287.130 382 500 8.5E-21 T 12-10-2018 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 SMART SM00304 336 388 5.5E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 SUPERFAMILY SSF47384 393 439 2.16E-5 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 611 2.6E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 597 2.6E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 651 2.6E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 632 2.6E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 553 652 9.3E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 SMART SM00387 546 654 1.4E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 SUPERFAMILY SSF158472 338 385 6.41E-9 T 12-10-2018 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 Gene3D G3DSA:3.30.450.20 83 210 1.5E-5 T 12-10-2018 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 SUPERFAMILY SSF55874 508 651 2.1E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 Gene3D G3DSA:3.30.565.10 507 656 8.4E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 Pfam PF00672 HAMP domain 337 384 5.8E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_12275 1b9350de044b7d25319f5bf5f6f5f205 657 Gene3D G3DSA:1.10.8.500 335 381 3.9E-8 T 12-10-2018 R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 Pfam PF00297 Ribosomal protein L3 54 181 1.2E-17 T 12-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 Gene3D G3DSA:2.40.30.10 128 209 2.0E-19 T 12-10-2018 R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 SUPERFAMILY SSF50447 2 208 2.91E-83 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 ProSitePatterns PS00474 Ribosomal protein L3 signature. 100 123 - T 12-10-2018 IPR019926 Ribosomal protein L3, conserved site R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 Gene3D G3DSA:2.40.50.620 33 93 2.1E-16 T 12-10-2018 R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 203 3.1E-91 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16180 d23c3781e1b101c8bb9cf6d94409b30e 210 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 206 39.529 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_05595 0111b24a292ce3badd45b51c1a7f8345 251 SUPERFAMILY SSF52096 1 248 1.82E-58 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_05595 0111b24a292ce3badd45b51c1a7f8345 251 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 241 3.4E-42 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 R615_05595 0111b24a292ce3badd45b51c1a7f8345 251 Gene3D G3DSA:3.90.226.10 2 250 2.1E-58 T 12-10-2018 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SUPERFAMILY SSF158472 202 249 1.57E-5 T 12-10-2018 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Gene3D G3DSA:3.40.50.2300 672 795 6.4E-37 T 12-10-2018 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 498 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 459 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 517 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 473 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 33 177 5.0E-19 T 12-10-2018 IPR019247 Histidine kinase BarA, N-terminal R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Gene3D G3DSA:3.40.50.2300 527 653 1.6E-9 T 12-10-2018 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Gene3D G3DSA:1.20.120.160 819 929 4.1E-21 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Pfam PF00072 Response regulator receiver domain 675 786 6.8E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SUPERFAMILY SSF52172 534 649 1.41E-9 T 12-10-2018 IPR011006 CheY-like superfamily R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SMART SM00448 673 786 6.3E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SMART SM00448 534 646 0.031 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SUPERFAMILY SSF52172 673 806 1.57E-36 T 12-10-2018 IPR011006 CheY-like superfamily R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SUPERFAMILY SSF47384 279 358 3.92E-23 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Gene3D G3DSA:3.30.565.10 359 525 3.6E-50 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SUPERFAMILY SSF47226 769 920 3.14E-17 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SUPERFAMILY SSF55874 346 516 3.14E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 518 2.6E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Gene3D G3DSA:1.10.287.130 198 275 2.4E-8 T 12-10-2018 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 357 1.2E-23 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SMART SM00388 292 357 1.2E-26 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Gene3D G3DSA:1.10.287.130 282 358 6.1E-28 T 12-10-2018 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SMART SM00387 404 520 9.2E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 SMART SM00304 200 252 1.7E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_12745 f67e3dd0c5b47a9b0cc5dcb493ddfdd9 943 Pfam PF01627 Hpt domain 841 923 4.3E-6 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82866 300 506 2.35E-29 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:3.30.70.1430 570 674 4.3E-279 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82693 153 333 3.4E-18 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 5.5E-17 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 5.5E-17 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 5.5E-17 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 5.5E-17 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 5.5E-17 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 5.5E-17 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82693 42 128 4.01E-19 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82866 810 1035 7.19E-52 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:3.30.2090.10 189 280 4.3E-279 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:1.20.1640.10 15 515 4.3E-279 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82714 192 274 4.05E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82714 725 810 1.26E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09065 c847355de5b911dc7f589b031d5220f1 1044 SUPERFAMILY SSF82693 567 663 3.66E-9 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:3.30.70.1430 42 822 4.3E-279 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:3.30.2090.10 726 814 4.3E-279 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Pfam PF00873 AcrB/AcrD/AcrF family 6 1029 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1040 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:3.30.70.1440 675 872 4.3E-279 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:1.20.1640.10 516 1027 4.3E-279 T 12-10-2018 R615_09065 c847355de5b911dc7f589b031d5220f1 1044 Gene3D G3DSA:3.30.70.1320 135 333 4.3E-279 T 12-10-2018 R615_09120 284774fc9481f1cd192701c102ad66a3 446 SUPERFAMILY SSF56954 19 427 3.27E-61 T 12-10-2018 R615_09120 284774fc9481f1cd192701c102ad66a3 446 Gene3D G3DSA:1.20.1600.10 39 431 4.1E-46 T 12-10-2018 R615_09120 284774fc9481f1cd192701c102ad66a3 446 Pfam PF02321 Outer membrane efflux protein 258 426 3.3E-14 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_09120 284774fc9481f1cd192701c102ad66a3 446 Pfam PF02321 Outer membrane efflux protein 48 228 1.1E-11 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_08840 4385540be2a7c244644e983dcc2798d5 394 Gene3D G3DSA:3.30.1360.100 303 391 1.7E-9 T 12-10-2018 R615_08840 4385540be2a7c244644e983dcc2798d5 394 Pfam PF05134 Type II secretion system (T2SS), protein L 33 134 6.4E-9 T 12-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain R615_08840 4385540be2a7c244644e983dcc2798d5 394 Gene3D G3DSA:3.30.420.380 6 157 1.4E-13 T 12-10-2018 R615_08840 4385540be2a7c244644e983dcc2798d5 394 PIRSF PIRSF015761 4 393 3.0E-27 T 12-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 R615_08840 4385540be2a7c244644e983dcc2798d5 394 Pfam PF12693 GspL periplasmic domain 236 390 2.9E-10 T 12-10-2018 IPR025691 GspL periplasmic domain R615_08840 4385540be2a7c244644e983dcc2798d5 394 SUPERFAMILY SSF53067 15 132 7.25E-12 T 12-10-2018 R615_11335 47a5e2bb9ba4db8a4eb8f7e45656b785 87 Gene3D G3DSA:3.30.2310.20 5 87 6.2E-40 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_11335 47a5e2bb9ba4db8a4eb8f7e45656b785 87 SUPERFAMILY SSF143011 7 86 3.27E-27 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_11335 47a5e2bb9ba4db8a4eb8f7e45656b785 87 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 8 87 1.1E-34 T 12-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 R615_11335 47a5e2bb9ba4db8a4eb8f7e45656b785 87 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 8 87 3.2E-42 T 12-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 Gene3D G3DSA:2.160.10.10 171 342 5.4E-69 T 12-10-2018 R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 342 5.9E-182 T 12-10-2018 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117 R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 SUPERFAMILY SSF51161 87 322 4.44E-39 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 252 284 4.4E-14 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 Gene3D G3DSA:3.30.60.70 130 170 1.2E-20 T 12-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 339 43.989 T 12-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 130 170 1.1E-15 T 12-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 R615_05885 b80cff19a34ee90e2daa5c48561244f9 342 Gene3D G3DSA:3.30.70.2010 1 129 7.1E-33 T 12-10-2018 R615_00965 d773673daa529e48be13d3c88654a96e 166 SUPERFAMILY SSF53098 8 160 1.43E-14 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_00965 d773673daa529e48be13d3c88654a96e 166 Gene3D G3DSA:3.30.420.10 3 165 6.2E-11 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_10725 df215a12143a8f3279f720677f53fa77 103 Gene3D G3DSA:3.30.70.120 1 103 7.9E-42 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal R615_10725 df215a12143a8f3279f720677f53fa77 103 SUPERFAMILY SSF102705 2 101 1.92E-24 T 12-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily R615_05045 73de012d66fd6ca1529ce5f5a1066a77 64 Gene3D G3DSA:1.10.10.1100 1 55 2.5E-19 T 12-10-2018 R615_05045 73de012d66fd6ca1529ce5f5a1066a77 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 3.8E-10 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain R615_08720 fef5636a50f5734acc87bed014af900b 129 SUPERFAMILY SSF75169 1 129 3.53E-28 T 12-10-2018 IPR027396 DsrEFH-like R615_08720 fef5636a50f5734acc87bed014af900b 129 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 4 129 2.9E-35 T 12-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 R615_08720 fef5636a50f5734acc87bed014af900b 129 Gene3D G3DSA:3.40.1260.10 1 129 2.6E-41 T 12-10-2018 IPR027396 DsrEFH-like R615_08720 fef5636a50f5734acc87bed014af900b 129 Pfam PF02635 DsrE/DsrF-like family 4 129 8.6E-21 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.8E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 Gene3D G3DSA:3.40.190.10 163 268 7.1E-77 T 12-10-2018 R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 Gene3D G3DSA:3.40.190.10 92 288 7.1E-77 T 12-10-2018 R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 Gene3D G3DSA:1.10.10.10 1 91 6.4E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 Pfam PF03466 LysR substrate binding domain 88 294 5.0E-43 T 12-10-2018 IPR005119 LysR, substrate-binding R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 SUPERFAMILY SSF53850 89 294 8.55E-42 T 12-10-2018 R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 SUPERFAMILY SSF46785 1 112 8.88E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 8.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 8.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05350 1e0b16e826217bb356f5a47e98a045c4 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 8.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_03520 8f6a3514b40e477076d2f067fcde9a5a 283 Gene3D G3DSA:3.20.20.80 1 126 1.9E-21 T 12-10-2018 R615_03520 8f6a3514b40e477076d2f067fcde9a5a 283 SUPERFAMILY SSF51445 3 179 8.61E-17 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_03520 8f6a3514b40e477076d2f067fcde9a5a 283 Pfam PF02449 Beta-galactosidase 3 124 5.4E-11 T 12-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 R615_01535 1c8332a703db73fcaf19f5ba9d52b985 147 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 11 140 5.9E-33 T 12-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 R615_01535 1c8332a703db73fcaf19f5ba9d52b985 147 SUPERFAMILY SSF55729 1 144 1.28E-30 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_01535 1c8332a703db73fcaf19f5ba9d52b985 147 Pfam PF00583 Acetyltransferase (GNAT) family 26 119 2.4E-16 T 12-10-2018 IPR000182 GNAT domain R615_01535 1c8332a703db73fcaf19f5ba9d52b985 147 Gene3D G3DSA:3.40.630.30 2 146 2.9E-39 T 12-10-2018 R615_15360 070a1ef68798bd64df676c87184f3230 623 SMART SM00267 455 623 2.6E-49 T 12-10-2018 IPR000160 GGDEF domain R615_15360 070a1ef68798bd64df676c87184f3230 623 SUPERFAMILY SSF55073 471 622 2.12E-42 T 12-10-2018 IPR029787 Nucleotide cyclase R615_15360 070a1ef68798bd64df676c87184f3230 623 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 462 622 6.2E-40 T 12-10-2018 IPR000160 GGDEF domain R615_15360 070a1ef68798bd64df676c87184f3230 623 Pfam PF07695 7TM diverse intracellular signalling 216 396 4.1E-16 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_15360 070a1ef68798bd64df676c87184f3230 623 Gene3D G3DSA:3.30.70.270 452 623 9.6E-50 T 12-10-2018 R615_15360 070a1ef68798bd64df676c87184f3230 623 Pfam PF00990 Diguanylate cyclase, GGDEF domain 466 618 2.6E-39 T 12-10-2018 IPR000160 GGDEF domain R615_02725 7bf8489378fcb744e6a8d99ab8976e2e 271 Pfam PF04748 Divergent polysaccharide deacetylase 35 243 3.2E-72 T 12-10-2018 IPR006837 Divergent polysaccharide deacetylase R615_02725 7bf8489378fcb744e6a8d99ab8976e2e 271 Gene3D G3DSA:3.20.20.370 21 253 1.1E-77 T 12-10-2018 R615_02725 7bf8489378fcb744e6a8d99ab8976e2e 271 SUPERFAMILY SSF88713 30 239 3.78E-67 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 R615_02105 30e8649094f631e96f72e9f24bb6774e 291 SUPERFAMILY SSF52540 1 152 1.08E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02105 30e8649094f631e96f72e9f24bb6774e 291 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 284 40.068 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 R615_02105 30e8649094f631e96f72e9f24bb6774e 291 PIRSF PIRSF005052 1 287 3.7E-110 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 R615_02105 30e8649094f631e96f72e9f24bb6774e 291 Gene3D G3DSA:3.40.50.300 2 159 9.7E-7 T 12-10-2018 R615_02105 30e8649094f631e96f72e9f24bb6774e 291 Pfam PF03668 P-loop ATPase protein family 1 284 4.3E-103 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 R615_11135 996163fef9d4b34b60678073ae8e89b6 987 Gene3D G3DSA:2.60.40.10 810 884 7.7E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11135 996163fef9d4b34b60678073ae8e89b6 987 Gene3D G3DSA:2.60.40.10 892 966 2.6E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11135 996163fef9d4b34b60678073ae8e89b6 987 Gene3D G3DSA:2.60.40.10 726 802 2.1E-8 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11135 996163fef9d4b34b60678073ae8e89b6 987 Pfam PF17164 Domain of unknown function (DUF5122) beta-propeller 260 294 1.0E-8 T 12-10-2018 IPR013431 Delta-60 repeat R615_11135 996163fef9d4b34b60678073ae8e89b6 987 Pfam PF17164 Domain of unknown function (DUF5122) beta-propeller 187 220 2.1E-4 T 12-10-2018 IPR013431 Delta-60 repeat R615_02495 258fd81f4d253d3d1e6a339c26b5c403 84 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 64 27.485 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 R615_02495 258fd81f4d253d3d1e6a339c26b5c403 84 Gene3D G3DSA:2.30.30.100 1 82 8.2E-34 T 12-10-2018 R615_02495 258fd81f4d253d3d1e6a339c26b5c403 84 SUPERFAMILY SSF50182 7 69 1.93E-24 T 12-10-2018 IPR010920 LSM domain superfamily R615_02495 258fd81f4d253d3d1e6a339c26b5c403 84 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 64 1.9E-30 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 R615_02495 258fd81f4d253d3d1e6a339c26b5c403 84 Pfam PF17209 Hfq protein 7 68 1.3E-31 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 R615_14885 010ff0b0b9365bcda26a3d80ee4dc390 545 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 35 124 1.5E-23 T 12-10-2018 IPR032093 Phospholipase D, N-terminal R615_14885 010ff0b0b9365bcda26a3d80ee4dc390 545 Pfam PF09423 PhoD-like phosphatase 136 469 1.5E-110 T 12-10-2018 IPR018946 Alkaline phosphatase D-related R615_14885 010ff0b0b9365bcda26a3d80ee4dc390 545 SUPERFAMILY SSF56300 131 477 3.21E-34 T 12-10-2018 R615_14885 010ff0b0b9365bcda26a3d80ee4dc390 545 Gene3D G3DSA:3.60.21.70 127 513 9.1E-127 T 12-10-2018 IPR038607 PhoD-like superfamily R615_14885 010ff0b0b9365bcda26a3d80ee4dc390 545 Gene3D G3DSA:2.60.40.380 26 126 1.9E-28 T 12-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 22 405 2.0E-130 T 12-10-2018 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 Pfam PF01960 ArgJ family 21 405 4.5E-137 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 Gene3D G3DSA:3.10.20.340 276 405 6.1E-42 T 12-10-2018 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 SUPERFAMILY SSF56266 14 401 1.7E-132 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 Gene3D G3DSA:3.60.70.12 9 275 2.2E-86 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 13 405 4.4E-116 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 R615_13355 c4d2b0f55ae4a171ac6e1bb038595420 405 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 405 145.323 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 R615_07155 8ae5bc90f42f8522d58ddb30f031c0f6 271 Gene3D G3DSA:3.10.129.90 2 269 4.1E-70 T 12-10-2018 R615_07155 8ae5bc90f42f8522d58ddb30f031c0f6 271 Pfam PF13622 Thioesterase-like superfamily 20 266 6.9E-48 T 12-10-2018 R615_07155 8ae5bc90f42f8522d58ddb30f031c0f6 271 SUPERFAMILY SSF54637 136 267 3.84E-22 T 12-10-2018 IPR029069 HotDog domain superfamily R615_07155 8ae5bc90f42f8522d58ddb30f031c0f6 271 SUPERFAMILY SSF54637 20 110 6.72E-17 T 12-10-2018 IPR029069 HotDog domain superfamily R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.533 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 Gene3D G3DSA:1.10.1200.10 1 74 1.1E-27 T 12-10-2018 IPR036736 ACP-like superfamily R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 SUPERFAMILY SSF47336 2 76 1.57E-22 T 12-10-2018 IPR036736 ACP-like superfamily R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 7.0E-11 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.0E-16 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain R615_09300 89f49f0178ff273de3a04e5b5fc715d7 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 74 2.8E-34 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 R615_16730 835f3e1b21e239cd12c3b4377fbb34df 545 Pfam PF02653 Branched-chain amino acid transport system / permease component 255 526 2.1E-49 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 R615_16730 835f3e1b21e239cd12c3b4377fbb34df 545 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 253 540 1.6E-128 T 12-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 SUPERFAMILY SSF81301 27 181 6.43E-39 T 12-10-2018 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 Pfam PF01743 Poly A polymerase head domain 54 184 1.3E-33 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 SUPERFAMILY SSF81891 183 415 1.83E-47 T 12-10-2018 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 Pfam PF12626 Polymerase A arginine-rich C-terminus 326 443 9.6E-37 T 12-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 15 442 36.77 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 Gene3D G3DSA:1.10.3090.10 183 426 3.8E-84 T 12-10-2018 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 211 272 2.1E-21 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 Gene3D G3DSA:3.30.460.10 20 180 8.8E-58 T 12-10-2018 R615_02620 ae9a4b633e2e12973b84741ca8841cf4 449 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 23 442 5.8E-154 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 R615_10145 50ebc97b9929a59074588bc97a5ce3a0 134 Gene3D G3DSA:3.40.630.30 1 130 1.9E-26 T 12-10-2018 R615_10145 50ebc97b9929a59074588bc97a5ce3a0 134 Pfam PF00583 Acetyltransferase (GNAT) family 15 120 3.6E-10 T 12-10-2018 IPR000182 GNAT domain R615_10145 50ebc97b9929a59074588bc97a5ce3a0 134 SUPERFAMILY SSF55729 4 121 1.8E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 SUPERFAMILY SSF63380 93 196 3.66E-29 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 Pfam PF00677 Lumazine binding domain 100 184 5.5E-22 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 Pfam PF00677 Lumazine binding domain 3 87 2.8E-21 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 SUPERFAMILY SSF63380 2 89 1.11E-23 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 Gene3D G3DSA:2.40.30.20 1 89 1.0E-24 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 2 198 1.8E-58 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 Gene3D G3DSA:2.40.30.20 102 203 5.2E-32 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_14780 7efc8f5cb1cb4738b5140f5a82b556f4 216 PIRSF PIRSF000498 1 209 1.1E-72 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_09380 16687cee6ac22e0f27ef4171fa7416c1 411 Gene3D G3DSA:3.30.70.1990 275 320 1.2E-22 T 12-10-2018 R615_09380 16687cee6ac22e0f27ef4171fa7416c1 411 Gene3D G3DSA:1.10.405.20 77 198 1.2E-22 T 12-10-2018 R615_09380 16687cee6ac22e0f27ef4171fa7416c1 411 Gene3D G3DSA:3.50.50.60 7 274 1.2E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_09380 16687cee6ac22e0f27ef4171fa7416c1 411 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 75 1.3E-13 T 12-10-2018 R615_09380 16687cee6ac22e0f27ef4171fa7416c1 411 SUPERFAMILY SSF51905 1 406 2.91E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_04005 38a5ee1870307f6077b4175a9dbe942f 206 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 12 205 30.309 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 R615_04005 38a5ee1870307f6077b4175a9dbe942f 206 SUPERFAMILY SSF53335 27 205 6.35E-44 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_04005 38a5ee1870307f6077b4175a9dbe942f 206 Pfam PF01728 FtsJ-like methyltransferase 28 204 1.2E-58 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 R615_04005 38a5ee1870307f6077b4175a9dbe942f 206 Gene3D G3DSA:3.40.50.150 27 206 1.8E-60 T 12-10-2018 R615_04005 38a5ee1870307f6077b4175a9dbe942f 206 PIRSF PIRSF005461 1 206 1.0E-77 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 R615_11780 5b0834087f97e41a55b1950a981ecba1 318 Pfam PF00149 Calcineurin-like phosphoesterase 7 136 3.4E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_11780 5b0834087f97e41a55b1950a981ecba1 318 SUPERFAMILY SSF56300 7 285 6.33E-31 T 12-10-2018 R615_11780 5b0834087f97e41a55b1950a981ecba1 318 Gene3D G3DSA:3.60.21.10 6 314 2.5E-40 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_08620 8c6cb89ec07494c0fa9ab9b4d1f92328 229 Pfam PF00849 RNA pseudouridylate synthase 4 148 8.5E-18 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_08620 8c6cb89ec07494c0fa9ab9b4d1f92328 229 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 8 172 6.6E-52 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_08620 8c6cb89ec07494c0fa9ab9b4d1f92328 229 SUPERFAMILY SSF55120 4 166 8.8E-42 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_08620 8c6cb89ec07494c0fa9ab9b4d1f92328 229 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 39 53 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_08620 8c6cb89ec07494c0fa9ab9b4d1f92328 229 Gene3D G3DSA:3.30.70.1560 68 166 1.1E-40 T 12-10-2018 R615_08620 8c6cb89ec07494c0fa9ab9b4d1f92328 229 Gene3D G3DSA:3.30.70.580 1 67 1.3E-24 T 12-10-2018 R615_14385 92e4f22c80121508fd6add3c3858ccad 296 Gene3D G3DSA:1.10.3680.10 61 209 7.1E-24 T 12-10-2018 IPR029024 TerB-like R615_14385 92e4f22c80121508fd6add3c3858ccad 296 Gene3D G3DSA:1.10.287.110 210 295 3.5E-14 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_14385 92e4f22c80121508fd6add3c3858ccad 296 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 4 292 35.08 T 12-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 R615_14385 92e4f22c80121508fd6add3c3858ccad 296 Pfam PF05099 Tellurite resistance protein TerB 69 191 5.5E-18 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal R615_14385 92e4f22c80121508fd6add3c3858ccad 296 SUPERFAMILY SSF46565 153 289 5.55E-28 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_14385 92e4f22c80121508fd6add3c3858ccad 296 Pfam PF00226 DnaJ domain 227 287 3.9E-11 T 12-10-2018 IPR001623 DnaJ domain R615_14385 92e4f22c80121508fd6add3c3858ccad 296 PRINTS PR00625 DnaJ domain signature 247 262 3.7E-9 T 12-10-2018 IPR001623 DnaJ domain R615_14385 92e4f22c80121508fd6add3c3858ccad 296 PRINTS PR00625 DnaJ domain signature 271 291 3.7E-9 T 12-10-2018 IPR001623 DnaJ domain R615_14385 92e4f22c80121508fd6add3c3858ccad 296 PRINTS PR00625 DnaJ domain signature 229 247 3.7E-9 T 12-10-2018 IPR001623 DnaJ domain R615_14385 92e4f22c80121508fd6add3c3858ccad 296 SMART SM00271 226 291 1.6E-16 T 12-10-2018 IPR001623 DnaJ domain R615_15825 1ef3fb8f6559817bf529063e2de32d4c 166 Gene3D G3DSA:1.10.10.10 11 98 5.1E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15825 1ef3fb8f6559817bf529063e2de32d4c 166 Pfam PF01475 Ferric uptake regulator family 29 147 1.5E-9 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 R615_15825 1ef3fb8f6559817bf529063e2de32d4c 166 Gene3D G3DSA:3.30.1490.190 100 158 7.6E-11 T 12-10-2018 R615_15825 1ef3fb8f6559817bf529063e2de32d4c 166 SUPERFAMILY SSF46785 22 152 6.94E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 SUPERFAMILY SSF53706 3 536 2.09E-114 T 12-10-2018 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 53 3.7E-8 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Gene3D G3DSA:3.40.50.740 72 488 3.8E-93 T 12-10-2018 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 SUPERFAMILY SSF50692 583 708 1.36E-28 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Gene3D G3DSA:2.40.40.20 577 709 1.5E-24 T 12-10-2018 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 SMART SM00926 3 59 4.7E-10 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Pfam PF01568 Molydopterin dinucleotide binding domain 584 701 1.7E-21 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Pfam PF00384 Molybdopterin oxidoreductase 62 485 2.3E-33 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Gene3D G3DSA:2.20.25.90 1 64 5.0E-12 T 12-10-2018 R615_07975 5fbcebf2a53faf8d214b08699227b93d 709 Gene3D G3DSA:3.40.228.10 137 334 3.8E-93 T 12-10-2018 R615_11660 8a47c52ebe969221e6608e33f75d9a81 40 Gene3D G3DSA:1.10.150.130 2 40 4.2E-9 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal R615_15720 c0a5c5714cbeddf7947d137a51e82c8d 313 Gene3D G3DSA:3.40.50.1820 30 313 2.6E-79 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_15720 c0a5c5714cbeddf7947d137a51e82c8d 313 SUPERFAMILY SSF53474 32 309 3.94E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_15720 c0a5c5714cbeddf7947d137a51e82c8d 313 Pfam PF00561 alpha/beta hydrolase fold 37 149 1.0E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 220 6.7E-60 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 102 128 2.1E-45 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 153 181 2.1E-45 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 2.1E-45 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 84 102 2.1E-45 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 8 225 1.1E-66 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_01040 7ec7c231ee64ff25e80a24d05181dea0 248 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 237 15.65 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 SMART SM00245 336 545 2.2E-58 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 548 697 2.9E-38 T 12-10-2018 IPR020992 Tail specific protease, C-terminal R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 Pfam PF03572 Peptidase family S41 370 542 2.2E-50 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 207 565 3.2E-95 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 Gene3D G3DSA:3.90.226.10 333 563 5.9E-64 T 12-10-2018 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 SMART SM00228 254 332 3.3E-8 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 Gene3D G3DSA:2.30.42.10 243 329 3.6E-12 T 12-10-2018 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 SUPERFAMILY SSF52096 179 550 8.12E-70 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 SUPERFAMILY SSF50156 252 328 1.29E-10 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_06910 dbe444d1e2499ee6fb4233e190ab7200 712 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 248 329 5.1E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_08815 4643d49c91fff94104d9118694b4fd42 143 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 2.1E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08815 4643d49c91fff94104d9118694b4fd42 143 SUPERFAMILY SSF54523 36 139 3.19E-29 T 12-10-2018 R615_08815 4643d49c91fff94104d9118694b4fd42 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08815 4643d49c91fff94104d9118694b4fd42 143 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 9 140 7.6E-46 T 12-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 R615_08815 4643d49c91fff94104d9118694b4fd42 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 9 34 9.9E-17 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 R615_08815 4643d49c91fff94104d9118694b4fd42 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 45 63 9.9E-17 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 R615_08815 4643d49c91fff94104d9118694b4fd42 143 Pfam PF08334 Type II secretion system (T2SS), protein G 32 140 9.3E-33 T 12-10-2018 IPR013545 Type II secretion system protein G R615_08815 4643d49c91fff94104d9118694b4fd42 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 4.3E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08815 4643d49c91fff94104d9118694b4fd42 143 Gene3D G3DSA:3.30.700.10 32 140 2.2E-31 T 12-10-2018 R615_15740 77970e4025f4609c00433774bb31f198 229 Pfam PF00072 Response regulator receiver domain 3 111 3.9E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15740 77970e4025f4609c00433774bb31f198 229 Gene3D G3DSA:3.40.50.2300 1 116 2.0E-33 T 12-10-2018 R615_15740 77970e4025f4609c00433774bb31f198 229 SMART SM00448 1 111 3.0E-41 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15740 77970e4025f4609c00433774bb31f198 229 Gene3D G3DSA:1.10.10.10 117 227 5.2E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15740 77970e4025f4609c00433774bb31f198 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 9.8E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_15740 77970e4025f4609c00433774bb31f198 229 SMART SM00862 146 222 3.1E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_15740 77970e4025f4609c00433774bb31f198 229 SUPERFAMILY SSF52172 1 175 1.49E-37 T 12-10-2018 IPR011006 CheY-like superfamily R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00102 Ornithine carbamoyltransferase signature 276 287 4.4E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00102 Ornithine carbamoyltransferase signature 78 91 4.4E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00102 Ornithine carbamoyltransferase signature 45 59 4.4E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00102 Ornithine carbamoyltransferase signature 214 224 4.4E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00102 Ornithine carbamoyltransferase signature 118 132 4.4E-30 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 1 298 79.824 T 12-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 Gene3D G3DSA:3.40.50.1370 132 293 9.9E-114 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 Gene3D G3DSA:3.40.50.1370 2 131 9.9E-114 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 2 297 4.6E-116 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 129 140 5.5E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 47 66 5.5E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 262 285 5.5E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 250 259 5.5E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 SUPERFAMILY SSF53671 2 297 8.77E-105 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 142 1.8E-50 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 47 54 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 R615_05370 62f56a749d00cfd17f4a56de359b9009 301 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 148 295 3.9E-50 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 R615_10550 75288d34f927bf19cd96e60988bc5f9d 493 Gene3D G3DSA:4.10.1080.10 34 143 7.9E-14 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_10550 75288d34f927bf19cd96e60988bc5f9d 493 SUPERFAMILY SSF103647 46 138 5.23E-13 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_10550 75288d34f927bf19cd96e60988bc5f9d 493 Gene3D G3DSA:2.160.20.110 202 439 4.4E-39 T 12-10-2018 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 214 333 1.4E-28 T 12-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 SUPERFAMILY SSF56176 10 203 9.27E-33 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 335 63.424 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 Pfam PF01565 FAD binding domain 24 147 6.3E-14 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 Gene3D G3DSA:3.30.465.10 76 224 6.7E-47 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 Gene3D G3DSA:3.90.78.10 225 335 1.4E-37 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 Gene3D G3DSA:3.30.43.10 1 74 1.8E-18 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 SUPERFAMILY SSF56194 209 334 1.12E-39 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_08255 a8f6052a2a2bacd43ec508dc334508bf 335 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 15 330 2.6E-57 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_11600 3d7ecb191e125f55d88e9ed34c27a930 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 1.1E-30 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 R615_11600 3d7ecb191e125f55d88e9ed34c27a930 110 Gene3D G3DSA:1.10.3730.20 1 110 8.2E-40 T 12-10-2018 R615_11600 3d7ecb191e125f55d88e9ed34c27a930 110 SUPERFAMILY SSF103481 6 106 1.12E-22 T 12-10-2018 R615_17355 141689c5d685dc2be9c75f4d8b1404c0 264 Gene3D G3DSA:3.40.50.300 1 264 3.4E-81 T 12-10-2018 R615_17355 141689c5d685dc2be9c75f4d8b1404c0 264 SUPERFAMILY SSF52540 3 254 8.83E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17355 141689c5d685dc2be9c75f4d8b1404c0 264 Pfam PF13614 AAA domain 3 178 4.3E-65 T 12-10-2018 IPR025669 AAA domain R615_10135 e19cf1c70e922ab5d68298317e1a43b6 155 Pfam PF08719 Domain of unknown function (DUF1768) 23 149 1.9E-27 T 12-10-2018 IPR012816 NADAR R615_10135 e19cf1c70e922ab5d68298317e1a43b6 155 Gene3D G3DSA:1.10.357.40 4 155 9.0E-46 T 12-10-2018 IPR037238 YbiA-like superfamily R615_10135 e19cf1c70e922ab5d68298317e1a43b6 155 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 17 149 5.4E-30 T 12-10-2018 IPR012816 NADAR R615_10135 e19cf1c70e922ab5d68298317e1a43b6 155 SUPERFAMILY SSF143990 6 152 1.23E-45 T 12-10-2018 IPR037238 YbiA-like superfamily R615_03200 607b0749b83c1b1a4794d78a459fc356 379 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 109 126 3.1E-16 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 56 67 3.1E-16 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 136 149 3.1E-16 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 SMART SM00936 269 359 6.8E-28 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 25 249 1.8E-79 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 Gene3D G3DSA:3.40.710.10 12 267 9.7E-90 T 12-10-2018 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 SUPERFAMILY SSF56601 4 268 1.05E-82 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like R615_03200 607b0749b83c1b1a4794d78a459fc356 379 Gene3D G3DSA:2.60.410.10 269 359 5.5E-26 T 12-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 269 359 1.6E-21 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_03200 607b0749b83c1b1a4794d78a459fc356 379 SUPERFAMILY SSF69189 269 361 6.87E-22 T 12-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_05900 57e9805c16174c69bb745b23942c7bb9 666 Gene3D G3DSA:1.10.287.950 332 664 2.0E-61 T 12-10-2018 R615_05900 57e9805c16174c69bb745b23942c7bb9 666 SUPERFAMILY SSF58104 355 663 5.49E-68 T 12-10-2018 R615_05900 57e9805c16174c69bb745b23942c7bb9 666 SMART SM00304 333 386 4.4E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_05900 57e9805c16174c69bb745b23942c7bb9 666 SMART SM00283 401 662 5.3E-64 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_05900 57e9805c16174c69bb745b23942c7bb9 666 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 463 628 6.6E-43 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_05900 57e9805c16174c69bb745b23942c7bb9 666 Pfam PF08376 Nitrate and nitrite sensing 57 295 1.1E-47 T 12-10-2018 IPR013587 Nitrate/nitrite sensing protein R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 Pfam PF03193 RsgA GTPase 104 279 1.0E-52 T 12-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 Gene3D G3DSA:3.40.50.300 107 278 4.0E-48 T 12-10-2018 R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 79 336 1.1E-77 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 Gene3D G3DSA:1.10.40.50 279 342 5.7E-22 T 12-10-2018 R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 SUPERFAMILY SSF52540 117 337 1.46E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 Gene3D G3DSA:2.40.50.140 40 105 1.6E-21 T 12-10-2018 R615_02455 6b4f9cc829aa678c74327d9b9c347bca 342 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 45 342 35.642 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SUPERFAMILY SSF55874 433 616 2.88E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SMART SM00073 6 103 1.4E-20 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SMART SM00260 610 750 1.1E-40 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Gene3D G3DSA:1.20.120.160 2 146 1.3E-38 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 617 4.2E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SUPERFAMILY SSF50341 617 750 4.05E-32 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Gene3D G3DSA:3.30.565.10 431 617 1.9E-55 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SUPERFAMILY SSF47226 6 128 5.36E-32 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SMART SM01231 370 430 2.5E-18 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Gene3D G3DSA:1.10.287.560 371 430 1.8E-19 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Pfam PF01627 Hpt domain 8 100 1.0E-18 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 596 6.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 572 6.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 534 6.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 615 6.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 371 430 2.3E-14 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Pfam PF01584 CheW-like domain 624 752 3.1E-25 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SMART SM00387 475 618 2.4E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 SUPERFAMILY SSF47384 372 431 3.37E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Gene3D G3DSA:2.30.30.40 618 746 6.6E-37 T 12-10-2018 R615_05260 95c5a5dc5f9254121c955d40bdbbd037 761 Gene3D G3DSA:2.40.50.180 641 705 6.6E-37 T 12-10-2018 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 SMART SM00729 81 287 6.8E-14 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 34 70 1.5E-8 T 12-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 Gene3D G3DSA:3.20.20.70 81 291 1.5E-20 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 Pfam PF04055 Radical SAM superfamily 88 247 1.6E-14 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 29 315 8.3E-129 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 SUPERFAMILY SSF102114 48 312 7.85E-66 T 12-10-2018 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 PIRSF PIRSF005963 5 317 5.2E-132 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_03215 ade15a2599bc778f6b8f9ca825500480 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 154.362 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 Gene3D G3DSA:1.10.10.10 1 89 4.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 SUPERFAMILY SSF46785 2 87 1.23E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 Gene3D G3DSA:3.40.190.10 90 304 1.1E-57 T 12-10-2018 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 Gene3D G3DSA:3.40.190.10 170 279 1.1E-57 T 12-10-2018 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 6.8E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 SUPERFAMILY SSF53850 90 307 1.47E-39 T 12-10-2018 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 Pfam PF03466 LysR substrate binding domain 97 307 4.1E-19 T 12-10-2018 IPR005119 LysR, substrate-binding R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.1E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.1E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05675 db88ca63dfe3a9a9295dadb879942e50 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.1E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 Gene3D G3DSA:2.40.30.170 61 280 2.8E-52 T 12-10-2018 R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 Gene3D G3DSA:2.40.420.20 281 348 2.8E-52 T 12-10-2018 R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 60 350 1.7E-44 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 SUPERFAMILY SSF111369 63 277 3.01E-30 T 12-10-2018 R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 259 5.4E-16 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 Gene3D G3DSA:1.10.287.470 106 165 2.8E-52 T 12-10-2018 R615_11695 d3d50355b2bfd212e3f580fd3a1e1d29 360 Gene3D G3DSA:2.40.50.100 71 199 2.8E-52 T 12-10-2018 R615_04755 1660f56b66b8d374f74275c143ada236 1206 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 317 2.1E-38 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G R615_04755 1660f56b66b8d374f74275c143ada236 1206 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 925 1189 1.2E-52 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G R615_04755 1660f56b66b8d374f74275c143ada236 1206 SUPERFAMILY SSF117143 864 1168 7.32E-45 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like R615_04755 1660f56b66b8d374f74275c143ada236 1206 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 1129 1206 1.2E-14 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain R615_04755 1660f56b66b8d374f74275c143ada236 1206 Pfam PF00460 Flagella basal body rod protein 3 33 1.9E-6 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 R615_04755 1660f56b66b8d374f74275c143ada236 1206 Gene3D G3DSA:2.60.98.20 917 1089 5.1E-22 T 12-10-2018 IPR037058 Flagellar hook protein FlgE superfamily R615_04755 1660f56b66b8d374f74275c143ada236 1206 SUPERFAMILY SSF117143 80 360 2.62E-20 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like R615_04755 1660f56b66b8d374f74275c143ada236 1206 Pfam PF07559 Flagellar basal body protein FlaE 932 1088 8.7E-29 T 12-10-2018 IPR011491 Flagellar hook protein FlgE R615_00070 276ed545a33542e8f15f1c61c18402d6 183 SUPERFAMILY SSF56784 1 179 9.44E-47 T 12-10-2018 IPR036412 HAD-like superfamily R615_00070 276ed545a33542e8f15f1c61c18402d6 183 Pfam PF13242 HAD-hyrolase-like 99 157 3.1E-13 T 12-10-2018 R615_00070 276ed545a33542e8f15f1c61c18402d6 183 PIRSF PIRSF004682 1 182 2.6E-52 T 12-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 R615_00070 276ed545a33542e8f15f1c61c18402d6 183 Gene3D G3DSA:3.40.50.1000 1 183 2.4E-52 T 12-10-2018 IPR023214 HAD superfamily R615_00070 276ed545a33542e8f15f1c61c18402d6 183 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 2 146 3.2E-33 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 R615_00070 276ed545a33542e8f15f1c61c18402d6 183 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 3 144 1.9E-43 T 12-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 R615_11275 01f8ba1a9fe503f77c801659bf0000f7 143 Pfam PF00571 CBS domain 3 55 6.3E-11 T 12-10-2018 IPR000644 CBS domain R615_11275 01f8ba1a9fe503f77c801659bf0000f7 143 Pfam PF00571 CBS domain 77 131 1.6E-12 T 12-10-2018 IPR000644 CBS domain R615_11275 01f8ba1a9fe503f77c801659bf0000f7 143 Gene3D G3DSA:3.10.580.10 1 143 2.1E-30 T 12-10-2018 R615_11275 01f8ba1a9fe503f77c801659bf0000f7 143 SMART SM00116 84 132 0.0018 T 12-10-2018 IPR000644 CBS domain R615_11275 01f8ba1a9fe503f77c801659bf0000f7 143 SMART SM00116 10 57 3.0E-5 T 12-10-2018 IPR000644 CBS domain R615_11275 01f8ba1a9fe503f77c801659bf0000f7 143 SUPERFAMILY SSF54631 1 131 9.08E-30 T 12-10-2018 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Pfam PF00271 Helicase conserved C-terminal domain 442 551 6.2E-14 T 12-10-2018 IPR001650 Helicase, C-terminal R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 912 23.793 T 12-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 SMART SM00487 142 331 5.2E-16 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 SMART SM00490 468 551 6.4E-13 T 12-10-2018 IPR001650 Helicase, C-terminal R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Gene3D G3DSA:3.30.360.80 662 734 1.6E-24 T 12-10-2018 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Gene3D G3DSA:2.30.30.930 54 106 2.7E-6 T 12-10-2018 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Pfam PF00176 SNF2 family N-terminal domain 165 362 1.1E-13 T 12-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Gene3D G3DSA:2.30.30.140 1 52 3.1E-22 T 12-10-2018 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 SUPERFAMILY SSF52540 259 578 4.37E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Pfam PF12137 RNA polymerase recycling family C-terminal 555 910 1.3E-102 T 12-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Gene3D G3DSA:3.40.50.10810 142 402 3.6E-77 T 12-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 SUPERFAMILY SSF52540 135 364 1.74E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08855 f0fcd8cbad6b58d6fcc1a9baf625caf6 912 Gene3D G3DSA:3.40.50.300 426 582 1.4E-37 T 12-10-2018 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 SUPERFAMILY SSF53774 2 332 1.57E-94 T 12-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 Pfam PF00710 Asparaginase, N-terminal 4 188 4.5E-59 T 12-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 Gene3D G3DSA:3.40.50.40 205 333 3.2E-39 T 12-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 PRINTS PR00139 Asparaginase/glutaminase family signature 5 16 2.8E-17 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 PRINTS PR00139 Asparaginase/glutaminase family signature 258 276 2.8E-17 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 PRINTS PR00139 Asparaginase/glutaminase family signature 79 97 2.8E-17 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 7 15 - T 12-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 4 331 1.2E-84 T 12-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 Gene3D G3DSA:3.40.50.1170 1 200 1.3E-69 T 12-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 PIRSF PIRSF500176 1 330 3.6E-90 T 12-10-2018 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 80 90 - T 12-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 PIRSF PIRSF001220 1 331 1.8E-76 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 R615_12090 b023e44ba30ae6dc6053e04d38fdef97 333 SMART SM00870 4 321 2.4E-98 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 Gene3D G3DSA:3.30.260.10 136 410 2.7E-234 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 Gene3D G3DSA:1.10.560.10 8 520 2.7E-234 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.551 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 SUPERFAMILY SSF54849 137 204 1.4E-24 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 SUPERFAMILY SSF48592 7 520 2.75E-75 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 525 4.6E-252 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 SUPERFAMILY SSF52029 184 376 2.99E-84 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 PRINTS PR00298 60kDa chaperonin signature 83 110 2.0E-73 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 PRINTS PR00298 60kDa chaperonin signature 27 53 2.0E-73 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 PRINTS PR00298 60kDa chaperonin signature 398 419 2.0E-73 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 PRINTS PR00298 60kDa chaperonin signature 350 375 2.0E-73 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 PRINTS PR00298 60kDa chaperonin signature 268 291 2.0E-73 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 522 2.3E-93 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 R615_13785 7db713a0af482f9b29a7e9502809f5b5 547 Gene3D G3DSA:3.50.7.10 192 372 2.7E-234 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily R615_16330 6de886a13a256311f12eec8ce229c9ae 330 Gene3D G3DSA:3.30.1110.10 13 133 1.2E-83 T 12-10-2018 R615_16330 6de886a13a256311f12eec8ce229c9ae 330 Gene3D G3DSA:3.40.1190.20 6 314 1.2E-83 T 12-10-2018 IPR029056 Ribokinase-like R615_16330 6de886a13a256311f12eec8ce229c9ae 330 SUPERFAMILY SSF53613 2 318 3.12E-79 T 12-10-2018 IPR029056 Ribokinase-like R615_16330 6de886a13a256311f12eec8ce229c9ae 330 Pfam PF00294 pfkB family carbohydrate kinase 59 319 4.0E-59 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB R615_16330 6de886a13a256311f12eec8ce229c9ae 330 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 273 286 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 Pfam PF00175 Oxidoreductase NAD-binding domain 112 228 3.3E-8 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 SUPERFAMILY SSF63380 4 99 8.24E-24 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 Gene3D G3DSA:2.40.30.10 1 97 1.3E-26 T 12-10-2018 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 PRINTS PR00410 Phenol hydroxylase reductase family signature 111 130 5.9E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 5.9E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 PRINTS PR00410 Phenol hydroxylase reductase family signature 51 58 5.9E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 Pfam PF00970 Oxidoreductase FAD-binding domain 16 91 5.2E-8 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 Gene3D G3DSA:3.40.50.80 100 253 2.0E-43 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain R615_05840 cbf26e6cb2e3238d3a3e9e6816a08107 257 SUPERFAMILY SSF52343 103 255 7.73E-41 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain R615_01240 9a581ae3f868049170ab52008854e047 314 Gene3D G3DSA:3.30.470.20 116 296 2.9E-113 T 12-10-2018 R615_01240 9a581ae3f868049170ab52008854e047 314 Gene3D G3DSA:3.30.1490.20 138 202 2.9E-113 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_01240 9a581ae3f868049170ab52008854e047 314 SUPERFAMILY SSF52440 3 123 1.01E-41 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_01240 9a581ae3f868049170ab52008854e047 314 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 121 4.6E-42 T 12-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 R615_01240 9a581ae3f868049170ab52008854e047 314 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 2.6E-76 T 12-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 R615_01240 9a581ae3f868049170ab52008854e047 314 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 310 3.5E-131 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 R615_01240 9a581ae3f868049170ab52008854e047 314 SUPERFAMILY SSF56059 124 311 3.09E-56 T 12-10-2018 R615_01240 9a581ae3f868049170ab52008854e047 314 Gene3D G3DSA:3.40.50.20 8 115 2.9E-113 T 12-10-2018 R615_01240 9a581ae3f868049170ab52008854e047 314 Hamap MF_00162 Glutathione synthetase [gshB]. 1 314 161.269 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 R615_06410 504e361643f9a615fa98269e7dbefab0 231 SUPERFAMILY SSF52540 40 210 3.38E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06410 504e361643f9a615fa98269e7dbefab0 231 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 5 227 3.6E-84 T 12-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 R615_06410 504e361643f9a615fa98269e7dbefab0 231 Pfam PF00308 Bacterial dnaA protein 92 204 4.8E-11 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA R615_06410 504e361643f9a615fa98269e7dbefab0 231 Gene3D G3DSA:1.10.8.60 165 230 1.5E-25 T 12-10-2018 R615_06410 504e361643f9a615fa98269e7dbefab0 231 Gene3D G3DSA:3.40.50.300 1 161 6.3E-35 T 12-10-2018 R615_06470 f3fd7424927489c3ed2d1f17f78f7560 1026 SUPERFAMILY SSF75011 178 491 2.22E-19 T 12-10-2018 R615_06470 f3fd7424927489c3ed2d1f17f78f7560 1026 SUPERFAMILY SSF51004 45 233 1.36E-21 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily R615_06470 f3fd7424927489c3ed2d1f17f78f7560 1026 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 51 152 2.3E-6 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region R615_06470 f3fd7424927489c3ed2d1f17f78f7560 1026 Gene3D G3DSA:2.130.10.10 273 523 4.1E-15 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_06470 f3fd7424927489c3ed2d1f17f78f7560 1026 Gene3D G3DSA:2.130.10.10 32 252 1.4E-24 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_06470 f3fd7424927489c3ed2d1f17f78f7560 1026 SUPERFAMILY SSF46626 672 776 7.45E-8 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Pfam PF08335 GlnD PII-uridylyltransferase 310 448 1.1E-42 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Pfam PF08335 GlnD PII-uridylyltransferase 841 948 3.4E-8 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Gene3D G3DSA:3.30.460.100 576 827 8.2E-81 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Gene3D G3DSA:1.20.120.1510 463 575 2.0E-32 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 41 287 5.2E-74 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 566 820 6.5E-83 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Gene3D G3DSA:1.20.120.330 298 453 6.7E-54 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Gene3D G3DSA:1.10.4050.10 1 123 6.0E-10 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 SUPERFAMILY SSF81301 30 298 4.96E-75 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 SUPERFAMILY SSF81593 300 449 3.37E-42 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 38 968 18.366 T 12-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 SUPERFAMILY SSF81593 833 966 5.65E-29 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Gene3D G3DSA:1.20.120.330 828 969 1.7E-42 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 Gene3D G3DSA:3.30.460.10 125 297 2.3E-58 T 12-10-2018 R615_01385 9c4e3eb5eac0cfce8b3d76575a66ed52 970 SUPERFAMILY SSF81301 539 827 3.76E-80 T 12-10-2018 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 376 7.8E-9 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 104 113 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Gene3D G3DSA:3.40.120.10 259 377 3.5E-39 T 12-10-2018 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 SUPERFAMILY SSF53738 11 171 2.04E-32 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 SUPERFAMILY SSF53738 246 364 6.47E-5 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 SUPERFAMILY SSF53738 160 260 5.89E-14 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Gene3D G3DSA:3.30.310.50 378 475 2.0E-27 T 12-10-2018 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 16 138 2.5E-28 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Gene3D G3DSA:3.40.120.10 7 156 1.3E-41 T 12-10-2018 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 161 258 4.7E-10 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 419 472 3.8E-8 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 Gene3D G3DSA:3.40.120.10 178 258 7.7E-31 T 12-10-2018 R615_04945 2e6bcec7ece2e7a37480586aa6ed4cb2 475 SUPERFAMILY SSF55957 413 473 5.23E-12 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 SUPERFAMILY SSF53623 106 311 1.44E-56 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Pfam PF01225 Mur ligase family, catalytic domain 28 92 7.7E-7 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 SUPERFAMILY SSF53244 316 447 4.94E-33 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Pfam PF08245 Mur ligase middle domain 109 295 3.7E-48 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Gene3D G3DSA:3.90.190.20 315 451 2.3E-37 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 33 447 2.4E-133 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 390 2.7E-14 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Gene3D G3DSA:3.40.1190.10 85 313 1.2E-73 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 448 32.025 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 SUPERFAMILY SSF63418 3 101 1.83E-23 T 12-10-2018 IPR035911 MurE/MurF, N-terminal R615_13420 d8238bf31e0d065aea8c9141e300afe5 454 Gene3D G3DSA:3.40.1390.10 3 84 5.4E-21 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.5E-110 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82693 566 669 1.88E-31 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:3.30.70.1430 568 667 0.0 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82866 805 1030 1.44E-44 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82714 721 808 1.57E-19 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82714 182 272 4.71E-21 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82693 135 330 2.27E-27 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:3.30.70.1440 668 864 0.0 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:1.20.1640.10 514 1021 0.0 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:3.30.2090.10 720 808 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Gene3D G3DSA:3.30.70.1430 38 816 0.0 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82693 38 132 2.25E-26 T 12-10-2018 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 Pfam PF00873 AcrB/AcrD/AcrF family 1 1024 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1030 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 R615_12290 0d3a25ef31f97d93c01a8f15f8706755 1043 SUPERFAMILY SSF82866 296 497 1.57E-48 T 12-10-2018 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 SUPERFAMILY SSF46785 8 104 7.68E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 Pfam PF01022 Bacterial regulatory protein, arsR family 30 74 2.1E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 SMART SM00418 22 100 4.1E-26 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 24 39 7.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 7.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 7.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 54 7.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07605 b6a82fd57d52948f1b74ca5e8b95514c 112 Gene3D G3DSA:1.10.10.10 9 108 3.8E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_12300 f402257996da782652942846670e6b03 568 Gene3D G3DSA:3.90.1640.30 45 320 1.5E-82 T 12-10-2018 R615_12300 f402257996da782652942846670e6b03 568 Gene3D G3DSA:2.40.50.460 445 568 3.2E-9 T 12-10-2018 R615_12300 f402257996da782652942846670e6b03 568 SUPERFAMILY SSF64182 44 458 6.41E-112 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily R615_12300 f402257996da782652942846670e6b03 568 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 20 566 4.3E-147 T 12-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 R615_12300 f402257996da782652942846670e6b03 568 Pfam PF02272 DHHA1 domain 316 442 1.9E-24 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 R615_12300 f402257996da782652942846670e6b03 568 Gene3D G3DSA:3.10.310.30 322 444 3.1E-28 T 12-10-2018 R615_12300 f402257996da782652942846670e6b03 568 Pfam PF01368 DHH family 72 204 3.9E-11 T 12-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 R615_04430 1b9c058d383137b44063cfea0413e292 104 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 43 101 4.7E-9 T 12-10-2018 IPR009387 Toxin HigB-2 R615_04430 1b9c058d383137b44063cfea0413e292 104 PIRSF PIRSF039032 1 104 2.4E-41 T 12-10-2018 IPR009387 Toxin HigB-2 R615_06280 2e42ecef3e3d23bf4a9e4b16f5d524bc 107 SMART SM00984 19 106 1.5E-5 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_06280 2e42ecef3e3d23bf4a9e4b16f5d524bc 107 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 20 95 3.8E-7 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_06280 2e42ecef3e3d23bf4a9e4b16f5d524bc 107 SUPERFAMILY SSF52413 13 106 1.06E-21 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 R615_06280 2e42ecef3e3d23bf4a9e4b16f5d524bc 107 Gene3D G3DSA:3.40.50.720 13 107 1.2E-37 T 12-10-2018 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.184 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 Gene3D G3DSA:3.90.230.10 1 257 3.4E-115 T 12-10-2018 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 SUPERFAMILY SSF55920 4 253 9.29E-95 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 3.5E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 3.5E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 3.5E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 3.5E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 251 1.1E-103 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 R615_05455 72f30bfdbc772393abc0fd95ceb195f5 259 Pfam PF00557 Metallopeptidase family M24 13 242 2.1E-56 T 12-10-2018 IPR000994 Peptidase M24 R615_15075 9f49296b8870f634b093016980a08779 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 136 1.5E-15 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain R615_15075 9f49296b8870f634b093016980a08779 160 Gene3D G3DSA:2.40.10.330 71 121 1.2E-53 T 12-10-2018 R615_15075 9f49296b8870f634b093016980a08779 160 SUPERFAMILY SSF54534 2 140 7.07E-34 T 12-10-2018 R615_15075 9f49296b8870f634b093016980a08779 160 Gene3D G3DSA:3.10.50.40 3 154 1.2E-53 T 12-10-2018 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 SMART SM00138 3 266 1.7E-83 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 SUPERFAMILY SSF53335 69 263 1.08E-44 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 Pfam PF03705 CheR methyltransferase, all-alpha domain 4 50 1.2E-6 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 PRINTS PR00996 Glutamate methyltransferase family signature 225 248 2.8E-41 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 PRINTS PR00996 Glutamate methyltransferase family signature 25 38 2.8E-41 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 PRINTS PR00996 Glutamate methyltransferase family signature 206 220 2.8E-41 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 PRINTS PR00996 Glutamate methyltransferase family signature 99 119 2.8E-41 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 PRINTS PR00996 Glutamate methyltransferase family signature 137 153 2.8E-41 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 PRINTS PR00996 Glutamate methyltransferase family signature 62 74 2.8E-41 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 SUPERFAMILY SSF47757 1 68 2.09E-10 T 12-10-2018 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 Pfam PF01739 CheR methyltransferase, SAM binding domain 69 262 3.0E-59 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 Gene3D G3DSA:3.40.50.150 68 267 1.2E-56 T 12-10-2018 R615_04735 c0a601b05768b6a51ad4b3adfa8feeee 272 Gene3D G3DSA:1.10.155.10 1 67 8.2E-7 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily R615_15425 ce2b076e5a05762991cc120476196893 506 Pfam PF00171 Aldehyde dehydrogenase family 27 493 2.6E-167 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_15425 ce2b076e5a05762991cc120476196893 506 Gene3D G3DSA:3.40.605.10 36 491 5.9E-166 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_15425 ce2b076e5a05762991cc120476196893 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 R615_15425 ce2b076e5a05762991cc120476196893 506 Gene3D G3DSA:3.40.309.10 265 463 5.9E-166 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_15425 ce2b076e5a05762991cc120476196893 506 SUPERFAMILY SSF53720 12 498 3.01E-164 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_15425 ce2b076e5a05762991cc120476196893 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 R615_00460 bfa92d2eb50e998cf51e494e9479a472 372 Pfam PF00487 Fatty acid desaturase 65 341 4.5E-31 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 SUPERFAMILY SSF50156 102 193 9.77E-19 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 SMART SM00245 183 373 1.6E-71 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 Gene3D G3DSA:2.30.42.10 110 197 1.7E-94 T 12-10-2018 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 SMART SM00228 110 181 5.3E-15 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 Gene3D G3DSA:3.30.750.44 58 348 1.7E-94 T 12-10-2018 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 Pfam PF03572 Peptidase family S41 208 371 8.7E-58 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 63 383 8.9E-108 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 Gene3D G3DSA:3.90.226.10 198 370 1.7E-94 T 12-10-2018 R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 SUPERFAMILY SSF52096 39 382 1.04E-84 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_02730 79c3b44c2d6f8304000480ef4c32c16c 454 Pfam PF13180 PDZ domain 110 189 1.1E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Gene3D G3DSA:1.20.58.1830 2 57 2.8E-6 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 SUPERFAMILY SSF64518 870 1205 1.57E-36 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Gene3D G3DSA:1.10.8.410 1157 1205 4.4E-21 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Pfam PF00700 Bacterial flagellin C-terminal helical region 1120 1205 6.3E-25 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Gene3D G3DSA:1.20.1330.10 58 173 1.0E-55 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Gene3D G3DSA:2.30.220.10 185 274 1.0E-55 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 SUPERFAMILY SSF64518 1 490 1.06E-49 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Gene3D G3DSA:2.170.280.10 174 374 1.0E-55 T 12-10-2018 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Pfam PF07196 Flagellin hook IN motif 900 928 6.9E-5 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Pfam PF07196 Flagellin hook IN motif 254 297 4.4E-5 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 PRINTS PR00207 Flagellin signature 76 95 6.1E-24 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 PRINTS PR00207 Flagellin signature 111 134 6.1E-24 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 PRINTS PR00207 Flagellin signature 37 54 6.1E-24 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 4.3E-43 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 R615_05030 70c103bdbe6d9f5898184f21eb7fce50 1206 Gene3D G3DSA:1.20.1330.10 1052 1156 1.4E-20 T 12-10-2018 R615_08910 ed2b09dfe1d50a983e920f822609d43d 121 Gene3D G3DSA:2.60.40.420 23 117 3.3E-19 T 12-10-2018 IPR008972 Cupredoxin R615_08910 ed2b09dfe1d50a983e920f822609d43d 121 SUPERFAMILY SSF49503 12 116 1.89E-10 T 12-10-2018 IPR008972 Cupredoxin R615_08910 ed2b09dfe1d50a983e920f822609d43d 121 Pfam PF13473 Cupredoxin-like domain 11 114 7.4E-22 T 12-10-2018 IPR028096 EfeO-type cupredoxin-like domain R615_14870 7d33c6e706fb947de196ba3c806116f3 320 Gene3D G3DSA:3.40.50.2300 6 151 1.3E-18 T 12-10-2018 R615_14870 7d33c6e706fb947de196ba3c806116f3 320 Gene3D G3DSA:3.40.50.2300 181 314 1.5E-5 T 12-10-2018 R615_14870 7d33c6e706fb947de196ba3c806116f3 320 SUPERFAMILY SSF53822 9 305 1.37E-22 T 12-10-2018 IPR028082 Periplasmic binding protein-like I R615_14870 7d33c6e706fb947de196ba3c806116f3 320 Pfam PF13407 Periplasmic binding protein domain 12 288 1.5E-27 T 12-10-2018 IPR025997 Periplasmic binding protein R615_14995 eb922e0c547de210fe947f3a631b691e 67 SUPERFAMILY SSF46785 2 61 2.27E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_14995 eb922e0c547de210fe947f3a631b691e 67 Gene3D G3DSA:1.10.10.10 1 63 2.2E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_09295 57b60ae659d8c9065beaae8dda2926ac 280 Pfam PF01063 Amino-transferase class IV 30 247 4.2E-34 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 R615_09295 57b60ae659d8c9065beaae8dda2926ac 280 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 20 247 3.5E-61 T 12-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 R615_09295 57b60ae659d8c9065beaae8dda2926ac 280 Gene3D G3DSA:3.30.470.10 2 115 8.0E-19 T 12-10-2018 R615_09295 57b60ae659d8c9065beaae8dda2926ac 280 Gene3D G3DSA:3.20.10.10 129 260 6.0E-39 T 12-10-2018 R615_09295 57b60ae659d8c9065beaae8dda2926ac 280 SUPERFAMILY SSF56752 6 249 1.7E-51 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 PIRSF PIRSF000137 1 531 1.2E-153 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 SUPERFAMILY SSF54373 290 473 1.67E-57 T 12-10-2018 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 Gene3D G3DSA:3.30.410.40 149 470 6.7E-184 T 12-10-2018 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 SUPERFAMILY SSF51905 1 530 6.48E-86 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 Pfam PF00732 GMC oxidoreductase 2 295 3.1E-99 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 Gene3D G3DSA:3.50.50.60 2 527 6.7E-184 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 79 102 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 Gene3D G3DSA:4.10.450.10 35 194 6.7E-184 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 Gene3D G3DSA:1.10.1220.110 94 148 6.7E-184 T 12-10-2018 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 254 268 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_10405 d7203139ca5fab676e043e7e801d3d2f 531 Pfam PF05199 GMC oxidoreductase 387 523 2.3E-43 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 R615_12245 3fd38b140575a494581a855c6df3243f 343 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 24 211 2.7E-31 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_12245 3fd38b140575a494581a855c6df3243f 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 319 2.2E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_12245 3fd38b140575a494581a855c6df3243f 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 319 335 2.2E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_12245 3fd38b140575a494581a855c6df3243f 343 SUPERFAMILY SSF46689 288 338 3.85E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_12245 3fd38b140575a494581a855c6df3243f 343 Pfam PF12833 Helix-turn-helix domain 260 337 7.2E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12245 3fd38b140575a494581a855c6df3243f 343 Gene3D G3DSA:1.10.10.60 239 342 6.2E-20 T 12-10-2018 R615_12245 3fd38b140575a494581a855c6df3243f 343 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 289 331 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_12245 3fd38b140575a494581a855c6df3243f 343 SMART SM00342 253 335 2.1E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_04080 66542cae67a3756ac66bccb957f1cd31 562 Pfam PF00082 Subtilase family 134 412 3.5E-51 T 12-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 R615_04080 66542cae67a3756ac66bccb957f1cd31 562 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 200 210 - T 12-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site R615_04080 66542cae67a3756ac66bccb957f1cd31 562 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 374 384 - T 12-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site R615_04080 66542cae67a3756ac66bccb957f1cd31 562 PRINTS PR00723 Subtilisin serine protease family (S8) signature 373 389 1.3E-13 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_04080 66542cae67a3756ac66bccb957f1cd31 562 PRINTS PR00723 Subtilisin serine protease family (S8) signature 134 153 1.3E-13 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_04080 66542cae67a3756ac66bccb957f1cd31 562 PRINTS PR00723 Subtilisin serine protease family (S8) signature 196 209 1.3E-13 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_04080 66542cae67a3756ac66bccb957f1cd31 562 SUPERFAMILY SSF49785 442 556 3.06E-5 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_04080 66542cae67a3756ac66bccb957f1cd31 562 Gene3D G3DSA:3.40.50.200 103 437 2.1E-99 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_04080 66542cae67a3756ac66bccb957f1cd31 562 SUPERFAMILY SSF52743 121 436 1.31E-74 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_13720 1ce709ac2a70931d9c35e848171da303 919 Pfam PF00005 ABC transporter 293 435 3.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_13720 1ce709ac2a70931d9c35e848171da303 919 SUPERFAMILY SSF52540 259 499 3.24E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13720 1ce709ac2a70931d9c35e848171da303 919 Pfam PF12698 ABC-2 family transporter protein 570 912 6.7E-41 T 12-10-2018 R615_13720 1ce709ac2a70931d9c35e848171da303 919 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_13720 1ce709ac2a70931d9c35e848171da303 919 SUPERFAMILY SSF52540 11 239 8.3E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13720 1ce709ac2a70931d9c35e848171da303 919 Pfam PF00005 ABC transporter 28 175 1.9E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_13720 1ce709ac2a70931d9c35e848171da303 919 SMART SM00382 301 491 6.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_13720 1ce709ac2a70931d9c35e848171da303 919 SMART SM00382 37 233 4.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_13720 1ce709ac2a70931d9c35e848171da303 919 Gene3D G3DSA:3.40.50.300 3 263 6.1E-60 T 12-10-2018 R615_13720 1ce709ac2a70931d9c35e848171da303 919 Gene3D G3DSA:3.40.50.300 269 514 4.4E-63 T 12-10-2018 R615_11875 25c3a90366542e19e4e204b3f9f6e978 334 Pfam PF12697 Alpha/beta hydrolase family 61 305 7.2E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_11875 25c3a90366542e19e4e204b3f9f6e978 334 PIRSF PIRSF005211 1 323 1.4E-82 T 12-10-2018 IPR012020 AB hydrolase 4 family R615_11875 25c3a90366542e19e4e204b3f9f6e978 334 Gene3D G3DSA:3.40.50.1820 51 315 5.0E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11875 25c3a90366542e19e4e204b3f9f6e978 334 SUPERFAMILY SSF53474 37 305 1.3E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_05650 9dd151be185f8fa7e758f4d69eb24796 300 SUPERFAMILY SSF103481 197 291 1.44E-15 T 12-10-2018 R615_05650 9dd151be185f8fa7e758f4d69eb24796 300 SUPERFAMILY SSF103481 50 150 1.83E-9 T 12-10-2018 R615_05650 9dd151be185f8fa7e758f4d69eb24796 300 Pfam PF00892 EamA-like transporter family 15 146 2.1E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_05650 9dd151be185f8fa7e758f4d69eb24796 300 Pfam PF00892 EamA-like transporter family 158 287 2.2E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_15470 65020e831ae7e3ad0ca0bd261302bfb5 318 Gene3D G3DSA:3.40.50.720 107 266 4.4E-35 T 12-10-2018 R615_15470 65020e831ae7e3ad0ca0bd261302bfb5 318 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 21 261 9.3E-75 T 12-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC R615_15470 65020e831ae7e3ad0ca0bd261302bfb5 318 Pfam PF13478 XdhC Rossmann domain 108 260 1.6E-35 T 12-10-2018 IPR027051 XdhC Rossmann domain R615_15470 65020e831ae7e3ad0ca0bd261302bfb5 318 Pfam PF02625 XdhC and CoxI family 17 73 3.4E-13 T 12-10-2018 IPR003777 XdhC- CoxI R615_04800 7d42e605c5e7af3269e86385083793ca 412 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 410 3.5E-88 T 12-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 R615_04800 7d42e605c5e7af3269e86385083793ca 412 Pfam PF00700 Bacterial flagellin C-terminal helical region 334 405 8.2E-7 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 R615_04800 7d42e605c5e7af3269e86385083793ca 412 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 138 4.6E-24 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 R615_04800 7d42e605c5e7af3269e86385083793ca 412 Gene3D G3DSA:1.20.1330.10 40 217 1.1E-47 T 12-10-2018 R615_04800 7d42e605c5e7af3269e86385083793ca 412 Gene3D G3DSA:1.20.1330.10 284 387 4.3E-11 T 12-10-2018 R615_04800 7d42e605c5e7af3269e86385083793ca 412 SUPERFAMILY SSF64518 1 412 5.23E-74 T 12-10-2018 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 Pfam PF00561 alpha/beta hydrolase fold 59 290 2.5E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00412 Epoxide hydrolase signature 130 143 4.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00412 Epoxide hydrolase signature 284 306 4.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00412 Epoxide hydrolase signature 84 99 4.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00412 Epoxide hydrolase signature 144 157 4.8E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 SUPERFAMILY SSF53474 37 308 8.74E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 Gene3D G3DSA:3.40.50.1820 28 312 5.7E-67 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 99 1.0E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 144 157 1.0E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 130 143 1.0E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_11240 29d9c30d9784ae0d4508cd8af0395479 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 253 267 1.0E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_02630 7e50250360fe00b7658a353bae4508ab 976 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 857 965 9.3E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_02630 7e50250360fe00b7658a353bae4508ab 976 Pfam PF00512 His Kinase A (phospho-acceptor) domain 750 811 3.6E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_02630 7e50250360fe00b7658a353bae4508ab 976 SUPERFAMILY SSF55785 625 725 4.71E-8 T 12-10-2018 IPR035965 PAS domain superfamily R615_02630 7e50250360fe00b7658a353bae4508ab 976 SUPERFAMILY SSF55874 808 966 1.96E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_02630 7e50250360fe00b7658a353bae4508ab 976 SUPERFAMILY SSF47384 745 812 8.44E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_02630 7e50250360fe00b7658a353bae4508ab 976 SMART SM00388 749 814 8.8E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_02630 7e50250360fe00b7658a353bae4508ab 976 Gene3D G3DSA:1.10.287.130 738 808 1.0E-18 T 12-10-2018 R615_02630 7e50250360fe00b7658a353bae4508ab 976 SMART SM00387 857 967 1.4E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_02630 7e50250360fe00b7658a353bae4508ab 976 Gene3D G3DSA:3.30.450.20 617 737 8.3E-10 T 12-10-2018 R615_02630 7e50250360fe00b7658a353bae4508ab 976 Gene3D G3DSA:1.20.1730.10 39 508 1.6E-10 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily R615_02630 7e50250360fe00b7658a353bae4508ab 976 Pfam PF00989 PAS fold 629 674 1.6E-6 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_02630 7e50250360fe00b7658a353bae4508ab 976 PRINTS PR00344 Bacterial sensor protein C-terminal signature 925 943 7.2E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02630 7e50250360fe00b7658a353bae4508ab 976 PRINTS PR00344 Bacterial sensor protein C-terminal signature 894 908 7.2E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02630 7e50250360fe00b7658a353bae4508ab 976 PRINTS PR00344 Bacterial sensor protein C-terminal signature 951 964 7.2E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02630 7e50250360fe00b7658a353bae4508ab 976 PRINTS PR00344 Bacterial sensor protein C-terminal signature 912 922 7.2E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02630 7e50250360fe00b7658a353bae4508ab 976 Gene3D G3DSA:3.30.565.10 809 965 5.2E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_10480 fa7432d9c0b27e2d173123b3bc405443 729 Gene3D G3DSA:3.40.190.10 268 390 3.9E-10 T 12-10-2018 R615_10480 fa7432d9c0b27e2d173123b3bc405443 729 SUPERFAMILY SSF53850 32 684 9.77E-85 T 12-10-2018 R615_10480 fa7432d9c0b27e2d173123b3bc405443 729 Gene3D G3DSA:3.10.105.10 397 642 3.9E-50 T 12-10-2018 R615_10480 fa7432d9c0b27e2d173123b3bc405443 729 Gene3D G3DSA:3.90.76.10 41 267 1.6E-21 T 12-10-2018 R615_10480 fa7432d9c0b27e2d173123b3bc405443 729 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 161 585 1.7E-53 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain R615_09780 a47f1bec812b18926ab6dad6dc602fbf 244 SUPERFAMILY SSF52833 4 110 7.58E-26 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_09780 a47f1bec812b18926ab6dad6dc602fbf 244 Gene3D G3DSA:3.40.30.10 1 109 2.5E-20 T 12-10-2018 R615_09780 a47f1bec812b18926ab6dad6dc602fbf 244 Pfam PF00085 Thioredoxin 7 106 7.9E-18 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 R615_02125 77ffc219c4c256d9d004b22d123af547 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_02125 77ffc219c4c256d9d004b22d123af547 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 6.5E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal R615_02125 77ffc219c4c256d9d004b22d123af547 241 SUPERFAMILY SSF52540 4 237 4.31E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02125 77ffc219c4c256d9d004b22d123af547 241 SMART SM00382 28 231 2.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02125 77ffc219c4c256d9d004b22d123af547 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 8.3E-120 T 12-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 R615_02125 77ffc219c4c256d9d004b22d123af547 241 Gene3D G3DSA:3.40.50.300 2 241 4.0E-71 T 12-10-2018 R615_02125 77ffc219c4c256d9d004b22d123af547 241 Pfam PF00005 ABC transporter 19 166 3.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 Gene3D G3DSA:2.40.50.100 526 601 6.8E-22 T 12-10-2018 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 SUPERFAMILY SSF51230 530 600 2.09E-19 T 12-10-2018 IPR011053 Single hybrid motif R615_14925 26869f0877c8e85014bb0103d33d67ae 602 SUPERFAMILY SSF89000 299 448 1.26E-48 T 12-10-2018 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 Pfam PF00682 HMGL-like 6 272 1.7E-50 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 Gene3D G3DSA:3.20.20.70 1 461 2.1E-170 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 SUPERFAMILY SSF51569 1 301 8.97E-92 T 12-10-2018 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 Pfam PF02436 Conserved carboxylase domain 294 484 1.5E-53 T 12-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 R615_14925 26869f0877c8e85014bb0103d33d67ae 602 Pfam PF00364 Biotin-requiring enzyme 538 600 9.5E-15 T 12-10-2018 IPR000089 Biotin/lipoyl attachment R615_14925 26869f0877c8e85014bb0103d33d67ae 602 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 9 597 1.6E-254 T 12-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PIRSF PIRSF004557 8 435 9.1E-122 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16080 60aa966604d95636a385d4fa5b33707d 440 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 428 29.06 T 12-10-2018 IPR026593 Protein translocase subunit SecY R615_16080 60aa966604d95636a385d4fa5b33707d 440 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 21 424 5.5E-133 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 9.7E-92 T 12-10-2018 R615_16080 60aa966604d95636a385d4fa5b33707d 440 SUPERFAMILY SSF103491 15 419 6.41E-131 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16080 60aa966604d95636a385d4fa5b33707d 440 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16080 60aa966604d95636a385d4fa5b33707d 440 Gene3D G3DSA:1.10.3370.10 12 424 1.5E-158 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16080 60aa966604d95636a385d4fa5b33707d 440 Pfam PF00344 SecY translocase 75 412 5.0E-116 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_16080 60aa966604d95636a385d4fa5b33707d 440 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 R615_14375 7a40ad68678cd4b4e143f035c80a8f43 219 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 9 212 1.6E-65 T 12-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 R615_14375 7a40ad68678cd4b4e143f035c80a8f43 219 Pfam PF03006 Haemolysin-III related 7 206 3.2E-48 T 12-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 Gene3D G3DSA:1.20.81.30 262 373 7.7E-28 T 12-10-2018 R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 Gene3D G3DSA:1.20.81.30 62 177 4.5E-31 T 12-10-2018 R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 374 388 2.8E-19 T 12-10-2018 IPR003004 GspF/PilC family R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 71 83 2.8E-19 T 12-10-2018 IPR003004 GspF/PilC family R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 170 198 2.8E-19 T 12-10-2018 IPR003004 GspF/PilC family R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 390 409 2.8E-19 T 12-10-2018 IPR003004 GspF/PilC family R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 Pfam PF00482 Type II secretion system (T2SS), protein F 280 401 4.3E-30 T 12-10-2018 IPR018076 Type II secretion system F domain R615_13965 ed8e170639fd21daf5f4c0ac3b567793 409 Pfam PF00482 Type II secretion system (T2SS), protein F 75 198 4.7E-32 T 12-10-2018 IPR018076 Type II secretion system F domain R615_17005 1040e5054090a82127da443aa2af22bb 218 SUPERFAMILY SSF56784 5 216 1.03E-38 T 12-10-2018 IPR036412 HAD-like superfamily R615_17005 1040e5054090a82127da443aa2af22bb 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 189 1.7E-12 T 12-10-2018 R615_17005 1040e5054090a82127da443aa2af22bb 218 Gene3D G3DSA:3.40.50.1000 8 200 1.6E-23 T 12-10-2018 IPR023214 HAD superfamily R615_17005 1040e5054090a82127da443aa2af22bb 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 93 190 3.8E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_09555 48e1d1eedb4f1875280d15e5401762ba 160 Gene3D G3DSA:3.40.30.10 17 151 1.5E-5 T 12-10-2018 R615_09555 48e1d1eedb4f1875280d15e5401762ba 160 SUPERFAMILY SSF52833 10 141 3.87E-8 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11750 e789f289485e20dbe8830220c657d053 405 Gene3D G3DSA:2.130.10.10 189 349 1.5E-11 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_11750 e789f289485e20dbe8830220c657d053 405 Gene3D G3DSA:2.130.10.10 38 173 1.1E-7 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_11750 e789f289485e20dbe8830220c657d053 405 Pfam PF14870 Photosynthesis system II assembly factor YCF48 71 132 3.6E-7 T 12-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain R615_11750 e789f289485e20dbe8830220c657d053 405 Pfam PF14870 Photosynthesis system II assembly factor YCF48 196 315 1.8E-11 T 12-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain R615_11750 e789f289485e20dbe8830220c657d053 405 SUPERFAMILY SSF50939 58 383 9.02E-37 T 12-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 SUPERFAMILY SSF52172 3 127 2.42E-38 T 12-10-2018 IPR011006 CheY-like superfamily R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 Gene3D G3DSA:1.10.10.10 120 230 5.9E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 SMART SM00448 2 112 2.4E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 Gene3D G3DSA:3.40.50.2300 1 119 1.9E-35 T 12-10-2018 R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 SUPERFAMILY SSF46894 130 228 2.15E-23 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 8.3E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 Pfam PF00072 Response regulator receiver domain 4 113 4.7E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_16970 db59b7474d66d31cb0af7c75a9bade3f 230 SMART SM00862 151 227 1.2E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_14020 3e78728993ab1f1474d932679b99f59b 335 SUPERFAMILY SSF52540 2 207 2.58E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_14020 3e78728993ab1f1474d932679b99f59b 335 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 17 325 5.9E-87 T 12-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 R615_14020 3e78728993ab1f1474d932679b99f59b 335 SUPERFAMILY SSF48019 209 327 5.1E-25 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 R615_14020 3e78728993ab1f1474d932679b99f59b 335 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 213 328 2.2E-8 T 12-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_14020 3e78728993ab1f1474d932679b99f59b 335 Pfam PF06144 DNA polymerase III, delta subunit 20 188 7.3E-30 T 12-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 R615_14020 3e78728993ab1f1474d932679b99f59b 335 Gene3D G3DSA:1.20.272.10 211 333 3.5E-30 T 12-10-2018 R615_14020 3e78728993ab1f1474d932679b99f59b 335 Gene3D G3DSA:3.40.50.300 1 137 4.4E-52 T 12-10-2018 R615_14020 3e78728993ab1f1474d932679b99f59b 335 Gene3D G3DSA:1.10.8.60 141 209 6.7E-21 T 12-10-2018 R615_15820 bff2b9912e884292969cdcef7433cfc1 275 Pfam PF01297 Zinc-uptake complex component A periplasmic 29 256 2.8E-26 T 12-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 R615_15820 bff2b9912e884292969cdcef7433cfc1 275 Gene3D G3DSA:3.40.50.1980 160 272 1.0E-29 T 12-10-2018 R615_15820 bff2b9912e884292969cdcef7433cfc1 275 SUPERFAMILY SSF53807 22 261 7.36E-40 T 12-10-2018 R615_15820 bff2b9912e884292969cdcef7433cfc1 275 Gene3D G3DSA:3.40.50.1980 28 113 7.7E-15 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 Gene3D G3DSA:3.55.50.10 101 193 1.6E-77 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 520 2.2E-129 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset R615_01815 c69a77850620771939388b283e59dd09 628 SUPERFAMILY SSF69279 12 189 9.78E-53 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 Gene3D G3DSA:2.30.110.50 15 340 1.6E-77 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 Gene3D G3DSA:2.40.50.230 361 460 1.9E-28 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily R615_01815 c69a77850620771939388b283e59dd09 628 SUPERFAMILY SSF69255 372 455 7.32E-22 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 Gene3D G3DSA:3.30.1920.30 226 299 1.6E-77 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 SUPERFAMILY SSF69279 205 365 3.23E-11 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 Pfam PF05954 Phage late control gene D protein (GPD) 31 341 5.2E-70 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 SUPERFAMILY SSF69349 445 607 2.75E-28 T 12-10-2018 R615_01815 c69a77850620771939388b283e59dd09 628 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 23 502 6.0E-91 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 Gene3D G3DSA:3.30.1330.10 4 146 2.4E-37 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 6 316 1.5E-78 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 SUPERFAMILY SSF55326 3 141 1.59E-30 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 SUPERFAMILY SSF56042 147 301 1.54E-27 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 Pfam PF00586 AIR synthase related protein, N-terminal domain 31 140 5.7E-17 T 12-10-2018 IPR016188 PurM-like, N-terminal domain R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 5 316 23.439 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 Gene3D G3DSA:3.90.650.10 148 316 1.3E-38 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 Pfam PF02769 AIR synthase related protein, C-terminal domain 153 294 2.2E-5 T 12-10-2018 IPR010918 PurM-like, C-terminal domain R615_14800 c34218f733eb0c6937f5d3cecc721a05 316 PIRSF PIRSF005303 1 316 7.1E-70 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 Gene3D G3DSA:1.10.1740.110 187 292 2.1E-140 T 12-10-2018 R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 SUPERFAMILY SSF53474 16 374 3.43E-104 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 Gene3D G3DSA:3.40.50.1820 26 361 2.1E-140 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 13 374 29.606 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 PIRSF PIRSF000443 4 382 3.7E-131 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 21 370 1.3E-141 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 R615_16515 9576f22c55a7bbf183cd98e25aaf892b 387 Pfam PF00561 alpha/beta hydrolase fold 51 359 2.8E-34 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08135 53fd4e64e20839be55bbe1f70cb53462 395 SUPERFAMILY SSF51197 2 294 1.51E-72 T 12-10-2018 R615_08135 53fd4e64e20839be55bbe1f70cb53462 395 Gene3D G3DSA:1.10.10.2510 210 384 7.6E-30 T 12-10-2018 R615_08135 53fd4e64e20839be55bbe1f70cb53462 395 Gene3D G3DSA:2.60.120.650 1 209 1.3E-88 T 12-10-2018 R615_08135 53fd4e64e20839be55bbe1f70cb53462 395 SMART SM00558 96 220 4.2E-4 T 12-10-2018 IPR003347 JmjC domain R615_08135 53fd4e64e20839be55bbe1f70cb53462 395 Pfam PF08007 Cupin superfamily protein 10 313 1.2E-91 T 12-10-2018 IPR003347 JmjC domain R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 Pfam PF02803 Thiolase, C-terminal domain 305 431 6.4E-31 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 SUPERFAMILY SSF53901 307 431 5.55E-29 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 SUPERFAMILY SSF53901 8 283 5.3E-55 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 Pfam PF00108 Thiolase, N-terminal domain 8 276 2.1E-48 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 430 2.3E-113 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 Gene3D G3DSA:3.40.47.10 1 431 6.3E-105 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_11265 175d23cc8d8a14fe1c850cb33bb417b8 431 PIRSF PIRSF000429 2 431 1.5E-104 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_16550 305ab1f0f947ada6b41cd10403502d68 315 Gene3D G3DSA:1.25.40.10 135 292 4.5E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_16550 305ab1f0f947ada6b41cd10403502d68 315 SUPERFAMILY SSF48452 207 282 5.87E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_16550 305ab1f0f947ada6b41cd10403502d68 315 SMART SM00028 255 288 28.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_16550 305ab1f0f947ada6b41cd10403502d68 315 SMART SM00028 221 254 10.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 127 3.1E-12 T 12-10-2018 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Gene3D G3DSA:3.30.565.10 2 217 1.3E-68 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_02485 2ac30a4852358a2ee524947f02115f1b 628 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 311 1.7E-97 T 12-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Pfam PF08676 MutL C terminal dimerisation domain 437 584 4.2E-51 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 SMART SM00853 441 584 1.7E-54 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 SUPERFAMILY SSF118116 437 626 8.89E-62 T 12-10-2018 IPR037198 MutL, C-terminal domain superfamily R615_02485 2ac30a4852358a2ee524947f02115f1b 628 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 12-10-2018 IPR014762 DNA mismatch repair, conserved site R615_02485 2ac30a4852358a2ee524947f02115f1b 628 SUPERFAMILY SSF54211 192 331 1.1E-37 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Gene3D G3DSA:3.30.1370.100 484 579 2.2E-58 T 12-10-2018 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 SMART SM01340 213 331 4.8E-59 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 624 28.991 T 12-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 SUPERFAMILY SSF55874 3 205 1.57E-53 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Gene3D G3DSA:3.30.230.10 218 330 4.7E-38 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Gene3D G3DSA:2.30.42.20 443 621 2.2E-58 T 12-10-2018 R615_02485 2ac30a4852358a2ee524947f02115f1b 628 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 330 2.9E-38 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 Pfam PF01189 16S rRNA methyltransferase RsmB/F 249 422 2.5E-39 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 SUPERFAMILY SSF53335 164 434 5.88E-51 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 Gene3D G3DSA:3.40.50.150 153 434 9.6E-61 T 12-10-2018 R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 258 268 5.5E-18 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 330 342 5.5E-18 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 417 434 5.5E-18 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 380 396 5.5E-18 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_12940 64a8ebb2d30cdb138c16208a0cd7c89b 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 229 243 5.5E-18 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_00850 c8e8e1b00590a0032c4970115640b109 692 SUPERFAMILY SSF52540 179 453 1.34E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00850 c8e8e1b00590a0032c4970115640b109 692 SMART SM00490 504 588 1.2E-22 T 12-10-2018 IPR001650 Helicase, C-terminal R615_00850 c8e8e1b00590a0032c4970115640b109 692 Gene3D G3DSA:3.40.50.300 208 450 6.2E-83 T 12-10-2018 R615_00850 c8e8e1b00590a0032c4970115640b109 692 SMART SM00487 265 459 8.4E-31 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_00850 c8e8e1b00590a0032c4970115640b109 692 Pfam PF00270 DEAD/DEAH box helicase 293 433 2.8E-17 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_00850 c8e8e1b00590a0032c4970115640b109 692 Pfam PF17191 RecG wedge domain 10 162 3.4E-16 T 12-10-2018 IPR033454 RecG, wedge domain R615_00850 c8e8e1b00590a0032c4970115640b109 692 Pfam PF00271 Helicase conserved C-terminal domain 481 587 1.2E-16 T 12-10-2018 IPR001650 Helicase, C-terminal R615_00850 c8e8e1b00590a0032c4970115640b109 692 SUPERFAMILY SSF50249 6 170 1.22E-35 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_00850 c8e8e1b00590a0032c4970115640b109 692 Gene3D G3DSA:3.40.50.300 457 629 5.7E-53 T 12-10-2018 R615_00850 c8e8e1b00590a0032c4970115640b109 692 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 663 4.0E-228 T 12-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 R615_00850 c8e8e1b00590a0032c4970115640b109 692 SUPERFAMILY SSF52540 292 651 3.5E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00850 c8e8e1b00590a0032c4970115640b109 692 Gene3D G3DSA:2.40.50.140 43 136 8.1E-8 T 12-10-2018 R615_04970 5d73e70681fc5bc7f7f1c2f96163cfed 356 Gene3D G3DSA:3.40.50.720 2 325 1.7E-128 T 12-10-2018 R615_04970 5d73e70681fc5bc7f7f1c2f96163cfed 356 SUPERFAMILY SSF51735 1 338 1.28E-91 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04970 5d73e70681fc5bc7f7f1c2f96163cfed 356 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 3.3E-90 T 12-10-2018 IPR016040 NAD(P)-binding domain R615_04970 5d73e70681fc5bc7f7f1c2f96163cfed 356 Gene3D G3DSA:3.90.25.10 201 334 1.7E-128 T 12-10-2018 R615_04970 5d73e70681fc5bc7f7f1c2f96163cfed 356 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 340 4.4E-148 T 12-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 SUPERFAMILY SSF56601 255 613 2.05E-91 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 616 48.196 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 613 1.4E-224 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 240 5.3E-44 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 608 1.3E-62 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 Gene3D G3DSA:3.40.710.10 250 615 7.7E-91 T 12-10-2018 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 SUPERFAMILY SSF56519 55 253 4.97E-51 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 Gene3D G3DSA:3.90.1310.10 63 249 1.8E-47 T 12-10-2018 R615_03120 134f8f5d5e4bfb7dd8bb7a37ee906481 617 Gene3D G3DSA:3.30.1390.30 84 160 1.8E-47 T 12-10-2018 R615_05655 178618488753d3e032a014ce91c3e6a2 169 Gene3D G3DSA:3.30.70.260 85 169 3.7E-21 T 12-10-2018 R615_05655 178618488753d3e032a014ce91c3e6a2 169 PIRSF PIRSF028103 1 169 7.3E-42 T 12-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 R615_05655 178618488753d3e032a014ce91c3e6a2 169 SUPERFAMILY SSF55021 1 69 8.49E-12 T 12-10-2018 R615_05655 178618488753d3e032a014ce91c3e6a2 169 Gene3D G3DSA:3.30.70.260 3 77 8.2E-16 T 12-10-2018 R615_05655 178618488753d3e032a014ce91c3e6a2 169 SUPERFAMILY SSF55021 88 168 5.79E-13 T 12-10-2018 R615_05655 178618488753d3e032a014ce91c3e6a2 169 Pfam PF13740 ACT domain 4 67 4.1E-12 T 12-10-2018 R615_05655 178618488753d3e032a014ce91c3e6a2 169 Pfam PF13740 ACT domain 92 121 3.8E-5 T 12-10-2018 R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 Pfam PF00106 short chain dehydrogenase 7 194 3.0E-52 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 SUPERFAMILY SSF51735 1 268 2.84E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.3E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.3E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.3E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.3E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 3.2E-4 T 12-10-2018 R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 Gene3D G3DSA:3.40.50.720 1 259 4.7E-70 T 12-10-2018 R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 6.3E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 6.3E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 6.3E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07875 db6a145202443d2d6fb50d07ea9deb0f 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_05645 e1952e6395e52585b9e9facea86af67a 311 Pfam PF03466 LysR substrate binding domain 89 287 5.8E-26 T 12-10-2018 IPR005119 LysR, substrate-binding R615_05645 e1952e6395e52585b9e9facea86af67a 311 SUPERFAMILY SSF46785 4 89 2.48E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_05645 e1952e6395e52585b9e9facea86af67a 311 Gene3D G3DSA:1.10.10.10 1 86 1.9E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05645 e1952e6395e52585b9e9facea86af67a 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 6.0E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05645 e1952e6395e52585b9e9facea86af67a 311 Gene3D G3DSA:3.40.190.290 94 292 1.7E-19 T 12-10-2018 R615_05645 e1952e6395e52585b9e9facea86af67a 311 SUPERFAMILY SSF53850 89 287 2.79E-26 T 12-10-2018 R615_05405 4f35a3410123bbd448000a3ac8d07a5c 234 PIRSF PIRSF000370 4 234 2.1E-32 T 12-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 R615_05405 4f35a3410123bbd448000a3ac8d07a5c 234 Gene3D G3DSA:3.20.20.70 5 234 1.7E-61 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_05405 4f35a3410123bbd448000a3ac8d07a5c 234 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 6 234 30.53 T 12-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 R615_05405 4f35a3410123bbd448000a3ac8d07a5c 234 SUPERFAMILY SSF102114 49 145 4.71E-6 T 12-10-2018 R615_05405 4f35a3410123bbd448000a3ac8d07a5c 234 TIGRFAM TIGR04508 queE_Cx14CxxC: 7-carboxy-7-deazaguanine synthase 6 234 2.9E-92 T 12-10-2018 IPR030977 7-carboxy-7-deazaguanine synthase, Cx14CxxC-type GO:0008616|GO:0046872 KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 SUPERFAMILY SSF53927 3 145 6.02E-45 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 Gene3D G3DSA:3.40.430.10 141 369 2.1E-68 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 SUPERFAMILY SSF53597 144 364 4.09E-57 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 PIRSF PIRSF006769 1 367 6.3E-123 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 97 1.8E-19 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 Pfam PF01872 RibD C-terminal domain 147 358 9.4E-47 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 7 361 2.8E-117 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 88 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 Gene3D G3DSA:3.40.140.10 1 140 1.3E-44 T 12-10-2018 R615_14775 e387cffc10a9f1d01db9f08b8ef97fcb 374 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 146 364 1.6E-56 T 12-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 R615_08845 f74e49a3754e8386298809c98f679e30 175 PIRSF PIRSF006291 14 173 1.6E-29 T 12-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 R615_08845 f74e49a3754e8386298809c98f679e30 175 Gene3D G3DSA:3.30.1360.100 96 175 2.9E-22 T 12-10-2018 R615_08845 f74e49a3754e8386298809c98f679e30 175 Pfam PF04612 Type II secretion system (T2SS), protein M 19 173 3.0E-32 T 12-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 R615_08845 f74e49a3754e8386298809c98f679e30 175 SUPERFAMILY SSF103054 96 172 6.28E-20 T 12-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily R615_15700 ee765ea4cbd8cd873f6aaed8ca609176 166 Pfam PF00293 NUDIX domain 37 150 5.4E-16 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_15700 ee765ea4cbd8cd873f6aaed8ca609176 166 Gene3D G3DSA:3.90.79.10 37 164 2.6E-22 T 12-10-2018 R615_15700 ee765ea4cbd8cd873f6aaed8ca609176 166 SUPERFAMILY SSF55811 2 163 7.31E-26 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_15700 ee765ea4cbd8cd873f6aaed8ca609176 166 ProSitePatterns PS00893 Nudix box signature. 68 89 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 SUPERFAMILY SSF56176 343 433 2.18E-20 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 Gene3D G3DSA:3.10.580.10 192 345 2.0E-27 T 12-10-2018 R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 SMART SM01091 345 427 1.4E-23 T 12-10-2018 IPR005170 Transporter-associated domain R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 SUPERFAMILY SSF54631 199 334 1.89E-19 T 12-10-2018 R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 Gene3D G3DSA:3.30.465.10 346 428 9.2E-24 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 Pfam PF01595 Domain of unknown function DUF21 5 196 9.4E-38 T 12-10-2018 IPR002550 CNNM, transmembrane domain R615_11895 85b318f32d69fcb41cca804ebb034dcb 438 Pfam PF03471 Transporter associated domain 346 426 5.3E-18 T 12-10-2018 IPR005170 Transporter-associated domain R615_14225 533843c81b25197af851bd88e2862d51 166 Gene3D G3DSA:2.40.160.20 27 166 1.8E-6 T 12-10-2018 R615_14225 533843c81b25197af851bd88e2862d51 166 Pfam PF13505 Outer membrane protein beta-barrel domain 10 152 3.6E-8 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel R615_14225 533843c81b25197af851bd88e2862d51 166 SUPERFAMILY SSF56925 29 154 1.26E-10 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_07755 1edd43e553e82c887253e01c0c5513f3 319 Pfam PF13280 WYL domain 144 315 1.9E-33 T 12-10-2018 IPR026881 WYL domain R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 624 1.1E-277 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Gene3D G3DSA:3.50.50.60 3 240 1.2E-87 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Gene3D G3DSA:3.50.50.60 300 462 9.3E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Gene3D G3DSA:1.10.150.570 571 624 4.4E-21 T 12-10-2018 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Gene3D G3DSA:1.10.10.1800 463 552 1.6E-28 T 12-10-2018 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 277 291 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 SUPERFAMILY SSF51905 7 265 3.92E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Pfam PF01134 Glucose inhibited division protein A 8 402 1.7E-164 T 12-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 626 42.114 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 SMART SM01228 548 619 1.6E-39 T 12-10-2018 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 372 395 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 R615_17435 4100f0a0c006d92627b6c373ae62d8e4 632 Pfam PF13932 GidA associated domain 405 617 1.2E-75 T 12-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 R615_03440 79d6596ffb8ca891b3d6bf8345c9e4ea 296 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 289 4.0E-87 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 R615_03440 79d6596ffb8ca891b3d6bf8345c9e4ea 296 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 295 30.97 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 R615_03440 79d6596ffb8ca891b3d6bf8345c9e4ea 296 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 294 1.9E-91 T 12-10-2018 R615_03440 79d6596ffb8ca891b3d6bf8345c9e4ea 296 Gene3D G3DSA:3.40.50.150 105 296 2.7E-52 T 12-10-2018 R615_03440 79d6596ffb8ca891b3d6bf8345c9e4ea 296 SUPERFAMILY SSF53335 48 294 8.29E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_03440 79d6596ffb8ca891b3d6bf8345c9e4ea 296 PIRSF PIRSF000401 1 296 1.3E-85 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 R615_05325 ad0cc3106decacc4101839809ce82491 173 SUPERFAMILY SSF54292 95 172 8.65E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 R615_05325 ad0cc3106decacc4101839809ce82491 173 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 99 165 4.1E-11 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 R615_05325 ad0cc3106decacc4101839809ce82491 173 Gene3D G3DSA:3.10.20.30 79 173 2.3E-16 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_05325 ad0cc3106decacc4101839809ce82491 173 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 125 133 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 R615_07725 25ca30092be726093b23e2e7f15420aa 337 PIRSF PIRSF000006 2 337 5.3E-87 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III R615_07725 25ca30092be726093b23e2e7f15420aa 337 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 38 78 9.0E-21 T 12-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal R615_07725 25ca30092be726093b23e2e7f15420aa 337 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 159 336 2.7E-56 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III R615_07725 25ca30092be726093b23e2e7f15420aa 337 SUPERFAMILY SSF46626 56 250 5.08E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_07725 25ca30092be726093b23e2e7f15420aa 337 Gene3D G3DSA:1.10.760.10 224 311 4.5E-71 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_07725 25ca30092be726093b23e2e7f15420aa 337 SUPERFAMILY SSF46626 252 335 1.05E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_07725 25ca30092be726093b23e2e7f15420aa 337 PRINTS PR00605 Class IC cytochrome C signature 179 190 3.1E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 R615_07725 25ca30092be726093b23e2e7f15420aa 337 PRINTS PR00605 Class IC cytochrome C signature 221 243 3.1E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 R615_07725 25ca30092be726093b23e2e7f15420aa 337 Gene3D G3DSA:1.20.58.1490 2 93 6.2E-33 T 12-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily R615_07725 25ca30092be726093b23e2e7f15420aa 337 Gene3D G3DSA:1.10.760.10 163 334 4.5E-71 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_07725 25ca30092be726093b23e2e7f15420aa 337 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 169 243 3.1E-16 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_07725 25ca30092be726093b23e2e7f15420aa 337 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 255 331 9.4E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 Gene3D G3DSA:1.10.287.130 179 295 6.0E-23 T 12-10-2018 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 448 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 1.4E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 SMART SM00388 229 295 4.7E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 449 7.9E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 Gene3D G3DSA:3.30.565.10 301 451 1.9E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 SUPERFAMILY SSF47384 212 295 5.1E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 SMART SM00387 339 451 2.6E-35 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 SUPERFAMILY SSF55874 284 449 1.44E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 230 295 1.2E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_08980 3aed977ac2c4d94c5b55d56df7f05e48 454 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 448 8.2E-133 T 12-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 R615_17205 245893f736028fc64808901fa429c023 313 Gene3D G3DSA:3.40.190.10 7 211 7.3E-82 T 12-10-2018 R615_17205 245893f736028fc64808901fa429c023 313 Gene3D G3DSA:3.30.160.40 221 307 2.3E-26 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 6 298 38.128 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 PRINTS PR00151 Porphobilinogen deaminase signature 77 96 2.6E-50 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 PRINTS PR00151 Porphobilinogen deaminase signature 144 161 2.6E-50 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 PRINTS PR00151 Porphobilinogen deaminase signature 46 66 2.6E-50 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 PRINTS PR00151 Porphobilinogen deaminase signature 125 142 2.6E-50 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 PRINTS PR00151 Porphobilinogen deaminase signature 231 248 2.6E-50 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 Gene3D G3DSA:3.40.190.10 104 203 7.3E-82 T 12-10-2018 R615_17205 245893f736028fc64808901fa429c023 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 232 248 - T 12-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 PIRSF PIRSF001438 1 312 2.7E-118 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 296 1.5E-21 T 12-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 SUPERFAMILY SSF53850 6 220 3.1E-84 T 12-10-2018 R615_17205 245893f736028fc64808901fa429c023 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 298 4.6E-110 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 SUPERFAMILY SSF54782 221 308 1.57E-25 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17205 245893f736028fc64808901fa429c023 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 213 1.6E-77 T 12-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 SUPERFAMILY SSF55205 309 735 5.07E-125 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 ProSitePatterns PS00885 EPSP synthase signature 2. 645 663 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 ProSitePatterns PS00104 EPSP synthase signature 1. 393 407 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 SUPERFAMILY SSF48179 182 288 3.74E-34 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Gene3D G3DSA:1.10.3660.10 184 288 7.4E-35 T 12-10-2018 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 318 733 3.1E-120 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 314 737 32.498 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Pfam PF02153 Prephenate dehydrogenase 25 274 2.8E-71 T 12-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Gene3D G3DSA:3.65.10.10 326 535 2.0E-153 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 311 729 2.7E-114 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Gene3D G3DSA:3.40.50.720 5 183 5.9E-49 T 12-10-2018 R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 SUPERFAMILY SSF51735 9 176 1.35E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06245 8e58fc75b2369ffafda2a7ee3cffb5bb 747 Gene3D G3DSA:3.65.10.10 318 728 2.0E-153 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 R615_08610 362c97563c46d2298cb23b3810840bd5 367 Gene3D G3DSA:2.30.30.280 213 280 2.1E-24 T 12-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 R615_08610 362c97563c46d2298cb23b3810840bd5 367 Gene3D G3DSA:3.40.50.620 1 212 4.8E-92 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08610 362c97563c46d2298cb23b3810840bd5 367 Pfam PF03054 tRNA methyl transferase 8 359 3.5E-133 T 12-10-2018 R615_08610 362c97563c46d2298cb23b3810840bd5 367 SUPERFAMILY SSF52402 8 295 6.84E-55 T 12-10-2018 R615_08610 362c97563c46d2298cb23b3810840bd5 367 Gene3D G3DSA:2.40.30.10 282 366 1.5E-29 T 12-10-2018 R615_08610 362c97563c46d2298cb23b3810840bd5 367 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 360 38.341 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 R615_08610 362c97563c46d2298cb23b3810840bd5 367 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 8 359 1.3E-137 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 R615_00160 915b961a5307e193c95f147bdcf71d73 427 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 39 216 2.9E-64 T 12-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 R615_00160 915b961a5307e193c95f147bdcf71d73 427 Gene3D G3DSA:3.40.50.11720 39 215 5.4E-47 T 12-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 R615_00160 915b961a5307e193c95f147bdcf71d73 427 SUPERFAMILY SSF53756 64 410 1.41E-16 T 12-10-2018 R615_00160 915b961a5307e193c95f147bdcf71d73 427 Gene3D G3DSA:3.40.50.2000 222 409 1.3E-60 T 12-10-2018 R615_00160 915b961a5307e193c95f147bdcf71d73 427 Pfam PF00534 Glycosyl transferases group 1 304 405 2.4E-7 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 R615_02860 a096fa32c7f4c5a5a8b0c18454beb221 265 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 3.3E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02860 a096fa32c7f4c5a5a8b0c18454beb221 265 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 25 1.2E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02860 a096fa32c7f4c5a5a8b0c18454beb221 265 SUPERFAMILY SSF54523 7 96 1.8E-7 T 12-10-2018 R615_02860 a096fa32c7f4c5a5a8b0c18454beb221 265 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_14185 5d2240a6c50e04052686c5f9b4e3fa27 201 Gene3D G3DSA:1.10.357.10 12 187 2.2E-35 T 12-10-2018 R615_14185 5d2240a6c50e04052686c5f9b4e3fa27 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 5.3E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14185 5d2240a6c50e04052686c5f9b4e3fa27 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 5.3E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14185 5d2240a6c50e04052686c5f9b4e3fa27 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 66 1.8E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14185 5d2240a6c50e04052686c5f9b4e3fa27 201 SUPERFAMILY SSF46689 13 80 3.88E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Gene3D G3DSA:2.40.110.10 163 289 1.3E-28 T 12-10-2018 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 456 1.5E-20 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 165 274 4.8E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 SUPERFAMILY SSF56645 42 281 4.58E-58 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 6 38 1.3E-9 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 477 596 2.8E-30 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 43 159 1.7E-13 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 SUPERFAMILY SSF47203 288 464 4.99E-44 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Gene3D G3DSA:1.20.140.10 290 465 3.7E-41 T 12-10-2018 R615_07550 a9be2fedb747fca0a9967079186df0ea 603 Gene3D G3DSA:1.10.540.10 20 161 7.9E-18 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 193 210 2.2E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 210 230 2.2E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 SUPERFAMILY SSF55781 38 169 3.24E-8 T 12-10-2018 R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 Pfam PF02954 Bacterial regulatory protein, Fis family 195 227 2.4E-10 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 Gene3D G3DSA:3.30.450.40 19 172 4.4E-6 T 12-10-2018 IPR029016 GAF-like domain superfamily R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 Gene3D G3DSA:1.10.10.60 185 229 7.8E-8 T 12-10-2018 R615_03085 bfe9bb2104456257fe17ef3bc9ccf793 232 SUPERFAMILY SSF46689 179 227 8.06E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_13330 fc8da1360966e1d61f587bd9812000ec 281 SMART SM00116 136 184 0.33 T 12-10-2018 IPR000644 CBS domain R615_13330 fc8da1360966e1d61f587bd9812000ec 281 SMART SM00116 72 121 8.1 T 12-10-2018 IPR000644 CBS domain R615_13330 fc8da1360966e1d61f587bd9812000ec 281 Gene3D G3DSA:3.30.465.10 192 277 6.7E-24 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 R615_13330 fc8da1360966e1d61f587bd9812000ec 281 Pfam PF00571 CBS domain 63 117 1.8E-5 T 12-10-2018 IPR000644 CBS domain R615_13330 fc8da1360966e1d61f587bd9812000ec 281 Pfam PF00571 CBS domain 136 184 1.1E-4 T 12-10-2018 IPR000644 CBS domain R615_13330 fc8da1360966e1d61f587bd9812000ec 281 Gene3D G3DSA:3.10.580.10 42 191 1.7E-51 T 12-10-2018 R615_13330 fc8da1360966e1d61f587bd9812000ec 281 SMART SM01091 201 279 1.6E-23 T 12-10-2018 IPR005170 Transporter-associated domain R615_13330 fc8da1360966e1d61f587bd9812000ec 281 SUPERFAMILY SSF54631 59 196 4.93E-33 T 12-10-2018 R615_13330 fc8da1360966e1d61f587bd9812000ec 281 Pfam PF03471 Transporter associated domain 202 277 5.8E-18 T 12-10-2018 IPR005170 Transporter-associated domain R615_13330 fc8da1360966e1d61f587bd9812000ec 281 SUPERFAMILY SSF56176 199 279 1.55E-20 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 R615_06705 cbccfe85dcf0419440490f04c6337abf 418 Gene3D G3DSA:3.20.20.80 116 266 7.8E-16 T 12-10-2018 R615_06705 cbccfe85dcf0419440490f04c6337abf 418 SUPERFAMILY SSF51445 135 303 8.04E-15 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_06705 cbccfe85dcf0419440490f04c6337abf 418 Pfam PF02449 Beta-galactosidase 125 245 2.5E-9 T 12-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 Gene3D G3DSA:3.30.470.20 197 397 7.6E-59 T 12-10-2018 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 SUPERFAMILY SSF52440 3 112 1.28E-34 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 SUPERFAMILY SSF51246 326 396 6.28E-14 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 397 52.073 T 12-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 Gene3D G3DSA:3.30.1490.20 123 196 7.1E-33 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 1.1E-4 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 Gene3D G3DSA:3.40.50.20 2 122 1.6E-53 T 12-10-2018 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 396 1.8E-185 T 12-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 SUPERFAMILY SSF56059 113 320 1.22E-55 T 12-10-2018 R615_10695 857ae3c66f0a74b4ee9a74c87736104d 398 Pfam PF02222 ATP-grasp domain 123 300 1.2E-53 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type R615_06235 52061d96963413bfb1fa160dd444252b 363 Gene3D G3DSA:1.20.59.10 7 95 3.2E-30 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 R615_06235 52061d96963413bfb1fa160dd444252b 363 Gene3D G3DSA:3.40.190.10 99 268 1.3E-57 T 12-10-2018 R615_06235 52061d96963413bfb1fa160dd444252b 363 Gene3D G3DSA:3.30.70.260 273 362 7.8E-29 T 12-10-2018 R615_06235 52061d96963413bfb1fa160dd444252b 363 Pfam PF00800 Prephenate dehydratase 97 272 4.8E-63 T 12-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 R615_06235 52061d96963413bfb1fa160dd444252b 363 Gene3D G3DSA:3.40.190.10 177 259 1.3E-57 T 12-10-2018 R615_06235 52061d96963413bfb1fa160dd444252b 363 Pfam PF01817 Chorismate mutase type II 11 93 2.9E-23 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 R615_06235 52061d96963413bfb1fa160dd444252b 363 SUPERFAMILY SSF55021 265 360 9.16E-27 T 12-10-2018 R615_06235 52061d96963413bfb1fa160dd444252b 363 SUPERFAMILY SSF48600 6 98 7.02E-21 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 R615_06235 52061d96963413bfb1fa160dd444252b 363 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 308 315 - T 12-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 R615_06235 52061d96963413bfb1fa160dd444252b 363 SUPERFAMILY SSF53850 96 279 3.58E-58 T 12-10-2018 R615_06235 52061d96963413bfb1fa160dd444252b 363 PIRSF PIRSF001500 1 363 5.5E-134 T 12-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 R615_06235 52061d96963413bfb1fa160dd444252b 363 Pfam PF01842 ACT domain 281 345 3.2E-8 T 12-10-2018 IPR002912 ACT domain R615_06235 52061d96963413bfb1fa160dd444252b 363 TIGRFAM TIGR01807 CM_P2: chorismate mutase 7 85 1.8E-29 T 12-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 R615_06235 52061d96963413bfb1fa160dd444252b 363 SMART SM00830 11 95 3.7E-30 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 R615_01060 1bf7f2b209a6c4f2277a5dbe0c75aa8d 110 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 95 3.8E-13 T 12-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 R615_01060 1bf7f2b209a6c4f2277a5dbe0c75aa8d 110 SUPERFAMILY SSF101386 4 98 8.07E-23 T 12-10-2018 R615_01060 1bf7f2b209a6c4f2277a5dbe0c75aa8d 110 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 2 92 20.119 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 R615_01060 1bf7f2b209a6c4f2277a5dbe0c75aa8d 110 Gene3D G3DSA:1.10.287.1080 1 98 4.8E-28 T 12-10-2018 R615_01060 1bf7f2b209a6c4f2277a5dbe0c75aa8d 110 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 92 1.9E-28 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 Gene3D G3DSA:3.40.50.720 2 247 1.9E-55 T 12-10-2018 R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 SUPERFAMILY SSF51735 3 234 6.76E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.1E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.1E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 Pfam PF00106 short chain dehydrogenase 4 194 1.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07565 62ad18df435d5c5948a6c6a721e92f57 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_09155 7c656644808829a2dbb40beec552fcda 312 SUPERFAMILY SSF161111 22 238 2.22E-51 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09155 7c656644808829a2dbb40beec552fcda 312 Gene3D G3DSA:1.20.1510.10 23 237 2.0E-32 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09155 7c656644808829a2dbb40beec552fcda 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 310 2.1E-65 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_09155 7c656644808829a2dbb40beec552fcda 312 Pfam PF01545 Cation efflux family 30 237 9.4E-43 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_08040 efc435d121cb2f34c3c7c8b84b7420bc 306 Pfam PF00005 ABC transporter 21 165 6.7E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_08040 efc435d121cb2f34c3c7c8b84b7420bc 306 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_08040 efc435d121cb2f34c3c7c8b84b7420bc 306 SMART SM00382 30 212 1.8E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08040 efc435d121cb2f34c3c7c8b84b7420bc 306 Gene3D G3DSA:3.40.50.300 2 236 7.6E-63 T 12-10-2018 R615_08040 efc435d121cb2f34c3c7c8b84b7420bc 306 SUPERFAMILY SSF52540 4 231 8.04E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.2E-52 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 SUPERFAMILY SSF74731 3 115 5.1E-50 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.208 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 Pfam PF00453 Ribosomal protein L20 3 109 1.6E-49 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 Gene3D G3DSA:1.10.1900.20 56 117 7.3E-29 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 9.0E-14 T 12-10-2018 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 Gene3D G3DSA:1.10.720.90 2 55 3.1E-25 T 12-10-2018 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.6E-42 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.6E-42 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06725 21bbfa90ee822a2e4e58e98abab63296 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.6E-42 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03895 3d510d5a28a442e14b637309a5954476 62 Pfam PF12728 Helix-turn-helix domain 6 54 3.0E-19 T 12-10-2018 R615_03895 3d510d5a28a442e14b637309a5954476 62 SUPERFAMILY SSF46955 5 55 1.67E-10 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_03895 3d510d5a28a442e14b637309a5954476 62 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 53 1.2E-16 T 12-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 R615_03895 3d510d5a28a442e14b637309a5954476 62 Gene3D G3DSA:1.10.1660.10 2 55 3.9E-9 T 12-10-2018 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 353 1.0E-157 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 354 1.2E-139 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 358 52.698 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 SMART SM01329 4 354 7.3E-208 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 SUPERFAMILY SSF53659 1 358 3.06E-124 T 12-10-2018 R615_09870 2c29e411640e1b1d74ce9b8a793413ae 359 Gene3D G3DSA:3.40.718.10 1 358 3.2E-150 T 12-10-2018 R615_02100 a2153431c7430515a58cd4d1163280ae 89 Gene3D G3DSA:3.30.1340.10 1 84 9.0E-31 T 12-10-2018 IPR035895 HPr-like superfamily R615_02100 a2153431c7430515a58cd4d1163280ae 89 SUPERFAMILY SSF55594 1 87 2.75E-28 T 12-10-2018 IPR035895 HPr-like superfamily R615_02100 a2153431c7430515a58cd4d1163280ae 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 12-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site R615_02100 a2153431c7430515a58cd4d1163280ae 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.5E-16 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like R615_02100 a2153431c7430515a58cd4d1163280ae 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.5E-16 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like R615_02100 a2153431c7430515a58cd4d1163280ae 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.5E-16 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like R615_02100 a2153431c7430515a58cd4d1163280ae 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 6.8E-32 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like R615_02100 a2153431c7430515a58cd4d1163280ae 89 Pfam PF00381 PTS HPr component phosphorylation site 3 82 4.3E-28 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like R615_02100 a2153431c7430515a58cd4d1163280ae 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site R615_08075 cf36df7241e11a194d3531914e68f19d 363 SUPERFAMILY SSF46689 310 358 1.56E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_08075 cf36df7241e11a194d3531914e68f19d 363 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 50 226 4.5E-28 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_08075 cf36df7241e11a194d3531914e68f19d 363 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 340 356 8.1E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_08075 cf36df7241e11a194d3531914e68f19d 363 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 325 340 8.1E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_08075 cf36df7241e11a194d3531914e68f19d 363 Gene3D G3DSA:1.10.10.60 259 363 9.0E-20 T 12-10-2018 R615_08075 cf36df7241e11a194d3531914e68f19d 363 Pfam PF12833 Helix-turn-helix domain 281 358 2.9E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_08075 cf36df7241e11a194d3531914e68f19d 363 SMART SM00342 274 356 6.3E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_13265 99910e23d9b148750f7e2045b876f276 313 Pfam PF14572 Phosphoribosyl synthetase-associated domain 203 313 5.4E-27 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 R615_13265 99910e23d9b148750f7e2045b876f276 313 Gene3D G3DSA:3.40.50.2020 7 301 4.1E-129 T 12-10-2018 R615_13265 99910e23d9b148750f7e2045b876f276 313 Gene3D G3DSA:3.40.50.2020 148 289 4.1E-129 T 12-10-2018 R615_13265 99910e23d9b148750f7e2045b876f276 313 SUPERFAMILY SSF53271 69 305 1.07E-64 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_13265 99910e23d9b148750f7e2045b876f276 313 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 3.9E-47 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 R615_13265 99910e23d9b148750f7e2045b876f276 313 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 12-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 R615_13265 99910e23d9b148750f7e2045b876f276 313 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 313 49.489 T 12-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 R615_13265 99910e23d9b148750f7e2045b876f276 313 SMART SM01400 4 121 9.6E-76 T 12-10-2018 R615_13265 99910e23d9b148750f7e2045b876f276 313 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 313 1.1E-122 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 R615_02390 84a56cd07a328386b2305de92e09cc4f 339 Pfam PF04055 Radical SAM superfamily 119 243 2.1E-11 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_02390 84a56cd07a328386b2305de92e09cc4f 339 TIGRFAM TIGR00238 TIGR00238: KamA family protein 7 329 2.7E-102 T 12-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase R615_02390 84a56cd07a328386b2305de92e09cc4f 339 SUPERFAMILY SSF102114 104 325 1.57E-31 T 12-10-2018 R615_02390 84a56cd07a328386b2305de92e09cc4f 339 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 16 336 7.0E-137 T 12-10-2018 IPR022462 Lysine-2,3-aminomutase-like R615_02390 84a56cd07a328386b2305de92e09cc4f 339 Gene3D G3DSA:3.20.20.70 51 335 2.3E-88 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_02390 84a56cd07a328386b2305de92e09cc4f 339 Pfam PF13353 4Fe-4S single cluster domain 112 184 1.6E-8 T 12-10-2018 R615_02390 84a56cd07a328386b2305de92e09cc4f 339 PIRSF PIRSF004911 4 339 6.7E-114 T 12-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 SUPERFAMILY SSF53474 40 306 2.84E-62 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 Pfam PF00561 alpha/beta hydrolase fold 66 177 4.3E-22 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 Gene3D G3DSA:3.40.50.1820 29 308 8.8E-72 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 135 148 2.6E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 251 265 2.6E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 149 162 2.6E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_00100 df7e453a61ca0cc3ace9199b5c1e0217 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 105 2.6E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_03670 b757e137b7700634dcc91e3eacbc63de 303 Gene3D G3DSA:3.40.50.720 1 290 4.1E-73 T 12-10-2018 R615_03670 b757e137b7700634dcc91e3eacbc63de 303 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 5 296 1.6E-99 T 12-10-2018 IPR010099 Epimerase family protein SDR39U1 R615_03670 b757e137b7700634dcc91e3eacbc63de 303 Pfam PF08338 Domain of unknown function (DUF1731) 253 299 1.5E-16 T 12-10-2018 IPR013549 Domain of unknown function DUF1731 R615_03670 b757e137b7700634dcc91e3eacbc63de 303 SUPERFAMILY SSF51735 4 300 1.39E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_03670 b757e137b7700634dcc91e3eacbc63de 303 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 218 4.7E-18 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 3.6E-153 T 12-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 Gene3D G3DSA:3.40.50.300 101 344 7.7E-107 T 12-10-2018 R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 SUPERFAMILY SSF52540 5 335 8.93E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 SMART SM00382 122 256 0.0013 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 Gene3D G3DSA:3.30.450.90 1 100 1.4E-35 T 12-10-2018 R615_16490 f2d3fe6e981b454e48aae4c4f4c4d221 344 Pfam PF00437 Type II/IV secretion system protein 11 263 1.8E-45 T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_16865 f0611b04d7d0e5596e50f6147324851c 220 Gene3D G3DSA:3.40.50.1000 3 214 7.7E-72 T 12-10-2018 IPR023214 HAD superfamily R615_16865 f0611b04d7d0e5596e50f6147324851c 220 SUPERFAMILY SSF56784 3 211 2.85E-36 T 12-10-2018 IPR036412 HAD-like superfamily R615_16865 f0611b04d7d0e5596e50f6147324851c 220 Gene3D G3DSA:1.20.1440.100 15 88 7.7E-72 T 12-10-2018 R615_16865 f0611b04d7d0e5596e50f6147324851c 220 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 1.0E-36 T 12-10-2018 R615_16865 f0611b04d7d0e5596e50f6147324851c 220 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 200 3.9E-43 T 12-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like R615_16865 f0611b04d7d0e5596e50f6147324851c 220 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 189 5.3E-24 T 12-10-2018 R615_04980 9aa127c13b352c62f0698dbb2657a6e8 186 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 180 6.0E-62 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 R615_04980 9aa127c13b352c62f0698dbb2657a6e8 186 Gene3D G3DSA:2.60.120.10 1 182 3.3E-72 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_04980 9aa127c13b352c62f0698dbb2657a6e8 186 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 180 2.1E-70 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 R615_04980 9aa127c13b352c62f0698dbb2657a6e8 186 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 180 9.4E-71 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 R615_04980 9aa127c13b352c62f0698dbb2657a6e8 186 SUPERFAMILY SSF51182 1 182 3.2E-74 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 SUPERFAMILY SSF50182 107 173 8.83E-18 T 12-10-2018 IPR010920 LSM domain superfamily R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 Pfam PF05552 Conserved TM helix 22 57 4.6E-7 T 12-10-2018 IPR008910 Conserved TM helix R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 SUPERFAMILY SSF82861 22 106 1.83E-16 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 137 171 - T 12-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 Gene3D G3DSA:3.30.70.100 173 267 3.5E-31 T 12-10-2018 R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 Pfam PF00924 Mechanosensitive ion channel 65 262 6.9E-58 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 Gene3D G3DSA:2.30.30.60 123 172 2.1E-20 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily R615_17175 bb7fca1cc13e7cf1dd22f3b5233f3f67 278 SUPERFAMILY SSF82689 176 272 1.18E-35 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 R615_01145 bb8c57160f49a0091f3d0e500e22ccf1 196 Gene3D G3DSA:1.20.1440.20 14 196 4.2E-58 T 12-10-2018 IPR023353 LemA-like domain superfamily R615_01145 bb8c57160f49a0091f3d0e500e22ccf1 196 Pfam PF04011 LemA family 5 196 3.4E-63 T 12-10-2018 IPR007156 LemA R615_01145 bb8c57160f49a0091f3d0e500e22ccf1 196 SUPERFAMILY SSF140478 24 174 2.62E-51 T 12-10-2018 IPR023353 LemA-like domain superfamily R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 5.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 5.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 227 241 5.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14660 01a431139d792affff44731e79d7e06c 288 Pfam PF00561 alpha/beta hydrolase fold 25 134 1.3E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00412 Epoxide hydrolase signature 96 109 3.1E-25 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00412 Epoxide hydrolase signature 30 48 3.1E-25 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00412 Epoxide hydrolase signature 50 65 3.1E-25 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00412 Epoxide hydrolase signature 258 280 3.1E-25 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_14660 01a431139d792affff44731e79d7e06c 288 PRINTS PR00412 Epoxide hydrolase signature 225 241 3.1E-25 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_14660 01a431139d792affff44731e79d7e06c 288 SUPERFAMILY SSF53474 5 282 6.49E-73 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_14660 01a431139d792affff44731e79d7e06c 288 Gene3D G3DSA:3.40.50.1820 4 282 5.2E-75 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16735 1a9793f8aa9bcdc435a3432c33641228 436 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 34 398 3.1E-174 T 12-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like R615_16735 1a9793f8aa9bcdc435a3432c33641228 436 Gene3D G3DSA:3.40.50.2300 36 370 2.3E-132 T 12-10-2018 R615_16735 1a9793f8aa9bcdc435a3432c33641228 436 Pfam PF13433 Periplasmic binding protein domain 34 402 2.0E-173 T 12-10-2018 R615_16735 1a9793f8aa9bcdc435a3432c33641228 436 Gene3D G3DSA:3.40.50.2300 149 389 2.3E-132 T 12-10-2018 R615_16735 1a9793f8aa9bcdc435a3432c33641228 436 SUPERFAMILY SSF53822 33 406 5.76E-87 T 12-10-2018 IPR028082 Periplasmic binding protein-like I R615_17280 86724fe40656d08c35567b31b071ff60 147 TIGRFAM TIGR00673 cynS: cyanase 6 147 4.2E-52 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 SUPERFAMILY SSF47413 2 77 7.62E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_17280 86724fe40656d08c35567b31b071ff60 147 PIRSF PIRSF001263 1 147 2.1E-53 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 Pfam PF02560 Cyanate lyase C-terminal domain 79 145 1.1E-36 T 12-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 Hamap MF_00535 Cyanate hydratase [cynS]. 1 147 70.468 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 PRINTS PR01693 Cyanase signature 35 52 9.6E-29 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 PRINTS PR01693 Cyanase signature 15 30 9.6E-29 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 PRINTS PR01693 Cyanase signature 132 142 9.6E-29 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 PRINTS PR01693 Cyanase signature 101 117 9.6E-29 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 PRINTS PR01693 Cyanase signature 83 97 9.6E-29 T 12-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 SUPERFAMILY SSF55234 80 147 2.09E-30 T 12-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 Gene3D G3DSA:1.10.260.40 2 80 4.8E-23 T 12-10-2018 R615_17280 86724fe40656d08c35567b31b071ff60 147 SMART SM01116 75 147 9.2E-50 T 12-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 R615_17280 86724fe40656d08c35567b31b071ff60 147 Gene3D G3DSA:3.30.1160.10 81 147 3.1E-35 T 12-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 R615_11865 61342d8ff834a1cd16f2b6f055db8c4b 192 Gene3D G3DSA:1.20.1540.10 1 186 2.1E-14 T 12-10-2018 IPR035952 Rhomboid-like superfamily R615_11865 61342d8ff834a1cd16f2b6f055db8c4b 192 SUPERFAMILY SSF144091 3 175 4.84E-19 T 12-10-2018 R615_11865 61342d8ff834a1cd16f2b6f055db8c4b 192 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 25 174 4.1E-40 T 12-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria R615_11865 61342d8ff834a1cd16f2b6f055db8c4b 192 Pfam PF01694 Rhomboid family 34 177 2.5E-10 T 12-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 R615_04625 9d733e7f90e9ad42962ad0f4e2131b18 205 SUPERFAMILY SSF69118 19 195 4.32E-30 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 R615_04625 9d733e7f90e9ad42962ad0f4e2131b18 205 Gene3D G3DSA:1.20.1290.10 54 193 3.3E-29 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 R615_04625 9d733e7f90e9ad42962ad0f4e2131b18 205 Pfam PF02627 Carboxymuconolactone decarboxylase family 64 123 3.6E-9 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 Gene3D G3DSA:1.25.40.10 231 322 1.5E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 SMART SM00028 233 266 17.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 SMART SM00028 267 301 130.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 SMART SM00028 40 73 19.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 SMART SM00028 74 107 36.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 SUPERFAMILY SSF48452 44 307 1.44E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 Pfam PF13414 TPR repeat 244 277 1.6E-7 T 12-10-2018 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 Gene3D G3DSA:1.25.40.10 29 148 8.3E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09535 a22373a78516c19e3632f0f862d1d69b 322 Pfam PF13432 Tetratricopeptide repeat 44 97 1.4E-5 T 12-10-2018 R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 Pfam PF00990 Diguanylate cyclase, GGDEF domain 158 313 1.4E-35 T 12-10-2018 IPR000160 GGDEF domain R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 Gene3D G3DSA:3.30.450.20 11 140 1.9E-33 T 12-10-2018 R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 Gene3D G3DSA:3.30.70.270 145 320 3.6E-44 T 12-10-2018 R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 SUPERFAMILY SSF55073 161 318 2.04E-35 T 12-10-2018 IPR029787 Nucleotide cyclase R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 SMART SM00267 145 317 4.2E-39 T 12-10-2018 IPR000160 GGDEF domain R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 SUPERFAMILY SSF55785 13 98 6.85E-9 T 12-10-2018 IPR035965 PAS domain superfamily R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 156 316 1.1E-38 T 12-10-2018 IPR000160 GGDEF domain R615_07145 ac31bf6a8137fa8b2f02dcfad1558719 322 SMART SM00091 12 78 3.1E-4 T 12-10-2018 IPR000014 PAS domain R615_10835 4ba27845547e00c7884383c01e1863fe 980 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 960 0.0 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 SUPERFAMILY SSF46589 913 976 4.66E-17 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Gene3D G3DSA:3.90.740.10 204 241 6.2E-6 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Gene3D G3DSA:1.10.287.380 906 978 8.2E-20 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 978 15.916 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 SUPERFAMILY SSF52374 1 647 2.3E-136 T 12-10-2018 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Pfam PF08264 Anticodon-binding domain of tRNA 701 854 1.0E-46 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 PRINTS PR00986 Valyl-tRNA synthetase signature 237 254 3.3E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 PRINTS PR00986 Valyl-tRNA synthetase signature 370 383 3.3E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 PRINTS PR00986 Valyl-tRNA synthetase signature 470 491 3.3E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 PRINTS PR00986 Valyl-tRNA synthetase signature 36 47 3.3E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 PRINTS PR00986 Valyl-tRNA synthetase signature 506 524 3.3E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 SUPERFAMILY SSF50677 191 366 2.22E-57 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Gene3D G3DSA:3.90.740.10 242 295 4.1E-6 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Gene3D G3DSA:3.40.50.620 298 561 8.1E-69 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_10835 4ba27845547e00c7884383c01e1863fe 980 SUPERFAMILY SSF47323 648 928 5.61E-71 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 54 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Gene3D G3DSA:1.10.730.10 582 846 1.2E-72 T 12-10-2018 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 637 2.9E-219 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 913 974 2.1E-20 T 12-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 R615_10835 4ba27845547e00c7884383c01e1863fe 980 Gene3D G3DSA:3.40.50.620 3 202 3.0E-65 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_13790 864e1587731b5b288575e06d3228338a 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 1.4E-31 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 SUPERFAMILY SSF50129 1 96 1.29E-33 T 12-10-2018 IPR011032 GroES-like superfamily R615_13790 864e1587731b5b288575e06d3228338a 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 26.143 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 SMART SM00883 2 95 1.8E-54 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 PRINTS PR00297 10kDa chaperonin signature 82 95 5.8E-32 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 PRINTS PR00297 10kDa chaperonin signature 3 18 5.8E-32 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 PRINTS PR00297 10kDa chaperonin signature 60 72 5.8E-32 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 PRINTS PR00297 10kDa chaperonin signature 25 46 5.8E-32 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 Gene3D G3DSA:2.30.33.40 1 97 9.0E-36 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 R615_13790 864e1587731b5b288575e06d3228338a 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 R615_11465 fa8556106cb752b70d4e222d33726edc 1611 PIRSF PIRSF036761 3 1605 0.0 T 12-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 R615_11465 fa8556106cb752b70d4e222d33726edc 1611 SUPERFAMILY SSF51735 942 1277 2.23E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_11465 fa8556106cb752b70d4e222d33726edc 1611 SUPERFAMILY SSF53223 751 953 1.73E-25 T 12-10-2018 R615_11465 fa8556106cb752b70d4e222d33726edc 1611 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 66 1598 0.0 T 12-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 SUPERFAMILY SSF46894 125 195 5.1E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 SMART SM00448 2 115 7.8E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 Gene3D G3DSA:3.40.50.12740 2 196 1.6E-52 T 12-10-2018 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 SMART SM00421 133 190 2.5E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 Pfam PF00072 Response regulator receiver domain 4 115 4.7E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 166 2.1E-8 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 150 2.1E-8 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 178 2.1E-8 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 136 188 1.2E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_06465 e727c52542c7a7d8d2bafed9eaee958d 196 SUPERFAMILY SSF52172 1 129 3.98E-31 T 12-10-2018 IPR011006 CheY-like superfamily R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 SMART SM00486 153 566 6.6E-64 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 ProSitePatterns PS00116 DNA polymerase family B signature. 554 562 - T 12-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Pfam PF00136 DNA polymerase family B 378 737 1.3E-34 T 12-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Gene3D G3DSA:3.30.70.2250 42 108 1.5E-26 T 12-10-2018 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Gene3D G3DSA:3.90.1600.10 446 644 1.3E-53 T 12-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Gene3D G3DSA:3.90.1600.10 353 445 1.6E-30 T 12-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Gene3D G3DSA:2.40.50.590 9 153 1.5E-26 T 12-10-2018 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 SUPERFAMILY SSF56672 390 790 3.89E-96 T 12-10-2018 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Gene3D G3DSA:1.10.132.60 651 796 7.6E-52 T 12-10-2018 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 421 434 5.7E-9 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 500 512 5.7E-9 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 552 560 5.7E-9 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Pfam PF03104 DNA polymerase family B, exonuclease domain 94 302 1.0E-17 T 12-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 Gene3D G3DSA:3.30.420.10 156 352 1.3E-65 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_02700 b7da0c5823c6655fb970ee3084a57a7b 796 SUPERFAMILY SSF53098 9 394 1.94E-70 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 7 328 2.5E-113 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 23 88 2.2E-22 T 12-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 SUPERFAMILY SSF51161 34 316 2.9E-79 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 178 4.1E-6 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 141 2.0E-8 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 221 256 4.0E-8 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 257 291 6.3E-5 T 12-10-2018 IPR001451 Hexapeptide repeat R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 325 35.714 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Gene3D G3DSA:3.40.1390.10 1 96 2.9E-31 T 12-10-2018 R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 266 294 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 R615_05510 9d59b36b8341e50194cc1f871046cfa7 340 Gene3D G3DSA:2.160.10.10 97 308 1.3E-64 T 12-10-2018 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Gene3D G3DSA:1.10.730.10 435 561 1.4E-156 T 12-10-2018 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 130 139 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 SUPERFAMILY SSF47323 434 561 9.16E-36 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Gene3D G3DSA:3.30.1360.70 2 111 1.3E-26 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 7 561 3.9E-137 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 SUPERFAMILY SSF55190 6 111 1.09E-24 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 4.2E-23 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 4.2E-23 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 4.2E-23 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 PRINTS PR01038 Arginyl-tRNA synthetase signature 307 328 4.2E-23 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 91 1.2E-24 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Pfam PF00750 tRNA synthetases class I (R) 101 409 1.8E-27 T 12-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 SUPERFAMILY SSF52374 113 451 1.66E-91 T 12-10-2018 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 SMART SM00836 440 561 1.1E-54 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Pfam PF05746 DALR anticodon binding domain 440 561 7.4E-35 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 SMART SM01016 3 91 2.9E-37 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Gene3D G3DSA:3.40.50.620 120 434 1.4E-156 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_01560 e0eebf38c864463c24f951ee8b5a414f 561 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 561 26.008 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.5E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.5E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 Pfam PF13305 WHG domain 98 178 5.2E-6 T 12-10-2018 IPR025996 WHG domain R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 SUPERFAMILY SSF48498 89 202 1.78E-8 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 SUPERFAMILY SSF46689 12 79 4.99E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 Gene3D G3DSA:1.10.357.10 7 200 2.9E-29 T 12-10-2018 R615_12095 b35b758f6154af3fe69f6bebf3e3fca5 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 2.8E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14425 c698b54c71526fe1d1e714b384abea46 271 Gene3D G3DSA:3.60.21.10 1 270 1.5E-82 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_14425 c698b54c71526fe1d1e714b384abea46 271 Pfam PF00149 Calcineurin-like phosphoesterase 4 127 3.8E-13 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_14425 c698b54c71526fe1d1e714b384abea46 271 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 47.299 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 R615_14425 c698b54c71526fe1d1e714b384abea46 271 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 268 3.3E-104 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 R615_14425 c698b54c71526fe1d1e714b384abea46 271 SUPERFAMILY SSF56300 1 259 7.08E-61 T 12-10-2018 R615_14425 c698b54c71526fe1d1e714b384abea46 271 PIRSF PIRSF000903 1 271 2.7E-117 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 336 1.2E-155 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 SUPERFAMILY SSF53067 10 150 1.94E-37 T 12-10-2018 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 Gene3D G3DSA:3.30.420.40 156 319 7.3E-128 T 12-10-2018 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 Gene3D G3DSA:3.30.420.40 14 329 7.3E-128 T 12-10-2018 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 Gene3D G3DSA:3.90.640.10 188 261 7.3E-128 T 12-10-2018 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 SUPERFAMILY SSF53067 151 333 2.25E-47 T 12-10-2018 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 1.7E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 189 209 1.7E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 1.7E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 134 153 1.7E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 302 328 1.7E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_02055 5d1c31505919a8e10ba47da1c55b24f0 345 Pfam PF06723 MreB/Mbl protein 11 336 4.5E-146 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 Gene3D G3DSA:3.40.50.300 68 279 5.0E-43 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 432 6.1E-9 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 Hamap MF_01498 DNA repair protein RadA [radA]. 21 454 42.729 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 Pfam PF13481 AAA domain 87 224 3.1E-16 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 SMART SM00382 93 246 3.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 85 113 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 324 347 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 126 143 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 10 34 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 215 243 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 176 200 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 PRINTS PR01874 DNA repair protein radA signature 250 276 5.7E-93 T 12-10-2018 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 SUPERFAMILY SSF54211 257 455 4.17E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 Gene3D G3DSA:3.30.230.10 328 456 1.1E-20 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 453 5.6E-210 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 R615_15175 149045c3e85cd3c74b310c9d49509c5b 456 SUPERFAMILY SSF52540 70 292 7.41E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 Gene3D G3DSA:3.20.20.450 530 789 4.0E-83 T 12-10-2018 IPR035919 EAL domain superfamily R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 Pfam PF00990 Diguanylate cyclase, GGDEF domain 361 504 7.3E-26 T 12-10-2018 IPR000160 GGDEF domain R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SMART SM00267 350 519 1.0E-20 T 12-10-2018 IPR000160 GGDEF domain R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SMART SM00304 302 355 0.0012 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SUPERFAMILY SSF55073 366 510 8.63E-24 T 12-10-2018 IPR029787 Nucleotide cyclase R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SUPERFAMILY SSF158472 304 352 3.01E-5 T 12-10-2018 R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 Gene3D G3DSA:3.30.70.270 357 529 4.1E-31 T 12-10-2018 R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 Pfam PF00563 EAL domain 534 770 6.8E-66 T 12-10-2018 IPR001633 EAL domain R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SUPERFAMILY SSF141868 543 783 5.1E-79 T 12-10-2018 IPR035919 EAL domain superfamily R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 360 500 7.5E-18 T 12-10-2018 IPR000160 GGDEF domain R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SMART SM00052 528 775 2.9E-92 T 12-10-2018 IPR001633 EAL domain R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 SUPERFAMILY SSF103190 57 180 5.49E-5 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 Gene3D G3DSA:1.20.1480.50 266 356 3.5E-7 T 12-10-2018 R615_11950 151b9ca3ec6c79e97823eee7b073ad56 790 Pfam PF14827 Double sensory domain of two-component sensor kinase 42 239 3.1E-12 T 12-10-2018 IPR029150 Double Cache domain 3 R615_03270 c38e054cb890ac500e3c25132fc04152 279 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 17 271 2.7E-115 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 R615_03270 c38e054cb890ac500e3c25132fc04152 279 Gene3D G3DSA:3.20.20.70 2 279 8.3E-97 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_03270 c38e054cb890ac500e3c25132fc04152 279 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 12 273 48.802 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 R615_03270 c38e054cb890ac500e3c25132fc04152 279 Pfam PF00793 DAHP synthetase I family 8 271 1.7E-68 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 R615_03270 c38e054cb890ac500e3c25132fc04152 279 SUPERFAMILY SSF51569 4 275 1.56E-101 T 12-10-2018 R615_04805 a3bb6d8476a7a6acf6587afc08aaaf5c 219 Pfam PF00149 Calcineurin-like phosphoesterase 20 190 5.6E-11 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_04805 a3bb6d8476a7a6acf6587afc08aaaf5c 219 SUPERFAMILY SSF56300 13 215 1.29E-36 T 12-10-2018 R615_04805 a3bb6d8476a7a6acf6587afc08aaaf5c 219 Gene3D G3DSA:3.60.21.10 6 219 1.4E-45 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_16760 0b9ca0f879b927aadf5ad3aba28faad7 163 Gene3D G3DSA:3.30.420.10 8 163 1.1E-14 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_16760 0b9ca0f879b927aadf5ad3aba28faad7 163 SUPERFAMILY SSF53098 8 160 2.78E-14 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 SUPERFAMILY SSF55874 362 514 1.3E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 Gene3D G3DSA:1.10.287.130 258 358 3.5E-12 T 12-10-2018 R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 SMART SM00387 406 517 5.0E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 Gene3D G3DSA:3.30.565.10 366 519 8.2E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 409 516 3.9E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 501 514 1.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 460 1.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 495 1.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_10760 818f2d7807d179ed9ee55f3c71941ee3 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 474 1.3E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01830 0e4ba97977db2d2602807787ac8e8a52 290 Pfam PF13672 Protein phosphatase 2C 21 224 1.2E-17 T 12-10-2018 R615_01830 0e4ba97977db2d2602807787ac8e8a52 290 Gene3D G3DSA:3.60.40.10 1 262 7.0E-68 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_01830 0e4ba97977db2d2602807787ac8e8a52 290 SUPERFAMILY SSF81606 9 258 4.19E-58 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_01830 0e4ba97977db2d2602807787ac8e8a52 290 SMART SM00331 15 259 5.1E-31 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_01830 0e4ba97977db2d2602807787ac8e8a52 290 SMART SM00332 1 257 1.0E-24 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Pfam PF16326 ABC transporter C-terminal domain 582 650 6.4E-18 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 SUPERFAMILY SSF52540 19 249 2.15E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Gene3D G3DSA:1.10.287.380 573 654 8.8E-21 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Gene3D G3DSA:3.40.50.300 23 292 2.3E-65 T 12-10-2018 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Pfam PF00005 ABC transporter 349 482 7.2E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 SUPERFAMILY SSF52540 321 536 1.43E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Pfam PF12848 ABC transporter 237 307 1.1E-8 T 12-10-2018 IPR032781 ABC-transporter extension domain R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 SMART SM00382 357 527 2.3E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 SMART SM00382 45 243 2.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Pfam PF00005 ABC transporter 36 198 2.2E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 ProSitePatterns PS00211 ABC transporters family signature. 454 468 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_11690 e6c1deda6a6c3c575b31c24ad2c23677 654 Gene3D G3DSA:3.40.50.300 295 562 9.9E-63 T 12-10-2018 R615_07455 ad10c655fd8e800eb971b313cf20423d 434 Gene3D G3DSA:2.130.10.10 323 429 6.5E-9 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_07455 ad10c655fd8e800eb971b313cf20423d 434 SUPERFAMILY SSF50974 125 421 6.54E-38 T 12-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 R615_07455 ad10c655fd8e800eb971b313cf20423d 434 Gene3D G3DSA:2.130.10.10 120 292 1.3E-15 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 468 6.6E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 433 6.6E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 474 487 6.6E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 447 6.6E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 488 9.4E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 Gene3D G3DSA:1.10.287.130 216 335 5.2E-16 T 12-10-2018 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 SUPERFAMILY SSF55874 332 488 1.44E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 SMART SM00387 381 490 4.6E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 339 1.1E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 SUPERFAMILY SSF47384 232 285 8.83E-6 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_15130 85e280fe076cab738cfc5fbfdb422dbe 499 Gene3D G3DSA:3.30.565.10 342 494 8.1E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_03875 f3f50bda67ee23c62f3876c997d0263f 1114 Pfam PF04851 Type III restriction enzyme, res subunit 135 278 8.7E-8 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 R615_03875 f3f50bda67ee23c62f3876c997d0263f 1114 SUPERFAMILY SSF52540 154 300 1.06E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03875 f3f50bda67ee23c62f3876c997d0263f 1114 Gene3D G3DSA:3.40.50.300 139 322 3.1E-6 T 12-10-2018 R615_04205 65ea07d3098e900f54f884b0b43f1342 85 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 1.6E-29 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor R615_04205 65ea07d3098e900f54f884b0b43f1342 85 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 15 68 3.0E-11 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor R615_05265 d910dddbd306402037db3d135c45a5fd 339 SUPERFAMILY SSF52172 2 109 8.54E-26 T 12-10-2018 IPR011006 CheY-like superfamily R615_05265 d910dddbd306402037db3d135c45a5fd 339 Gene3D G3DSA:3.40.50.180 148 337 2.0E-66 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal R615_05265 d910dddbd306402037db3d135c45a5fd 339 SMART SM00448 3 122 2.4E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05265 d910dddbd306402037db3d135c45a5fd 339 SUPERFAMILY SSF52738 153 336 1.7E-60 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal R615_05265 d910dddbd306402037db3d135c45a5fd 339 Gene3D G3DSA:3.40.50.2300 1 131 2.4E-29 T 12-10-2018 R615_05265 d910dddbd306402037db3d135c45a5fd 339 PIRSF PIRSF000876 1 338 1.1E-121 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_05265 d910dddbd306402037db3d135c45a5fd 339 Pfam PF01339 CheB methylesterase 156 334 4.6E-58 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_05265 d910dddbd306402037db3d135c45a5fd 339 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 339 37.505 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_05265 d910dddbd306402037db3d135c45a5fd 339 Pfam PF00072 Response regulator receiver domain 5 109 1.2E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 Pfam PF13167 GTP-binding GTPase N-terminal 27 114 2.9E-31 T 12-10-2018 IPR025121 GTPase HflX, N-terminal R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 Gene3D G3DSA:3.40.50.300 199 368 7.3E-36 T 12-10-2018 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 13 363 4.8E-151 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 Hamap MF_00900 GTPase HflX [hflX]. 29 393 47.312 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 Pfam PF01926 50S ribosome-binding GTPase 202 320 1.3E-20 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 Gene3D G3DSA:3.40.50.11060 21 140 3.4E-39 T 12-10-2018 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 Pfam PF16360 GTP-binding GTPase Middle Region 116 194 3.6E-30 T 12-10-2018 IPR032305 GTP-binding protein, middle domain R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 PIRSF PIRSF006809 6 426 1.6E-145 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 SUPERFAMILY SSF52540 199 372 5.97E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 269 287 2.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 223 241 2.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_02500 c92bfd8c9c3bace079da1d18f5691e28 437 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 202 222 2.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_05230 27af9a790a514a141c2a118603dffd90 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 78 97 1.8E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 194 211 1.8E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 145 161 1.8E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 245 259 1.8E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 41 54 1.8E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 164 182 1.8E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 24 730 2.3E-257 T 12-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 R615_05230 27af9a790a514a141c2a118603dffd90 734 Gene3D G3DSA:1.10.8.540 538 626 7.5E-22 T 12-10-2018 R615_05230 27af9a790a514a141c2a118603dffd90 734 PIRSF PIRSF005419 7 734 2.7E-240 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 Pfam PF00771 FHIPEP family 35 721 2.5E-264 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 R615_05230 27af9a790a514a141c2a118603dffd90 734 Gene3D G3DSA:3.40.30.60 394 537 1.7E-52 T 12-10-2018 R615_05230 27af9a790a514a141c2a118603dffd90 734 Gene3D G3DSA:1.10.490.80 629 730 3.7E-14 T 12-10-2018 R615_14115 f839b1f8b5a014760f71f3f4b979530a 155 Pfam PF13426 PAS domain 26 131 3.2E-22 T 12-10-2018 IPR000014 PAS domain R615_14115 f839b1f8b5a014760f71f3f4b979530a 155 SUPERFAMILY SSF55785 22 132 2.79E-27 T 12-10-2018 IPR035965 PAS domain superfamily R615_14115 f839b1f8b5a014760f71f3f4b979530a 155 SMART SM00086 90 132 1.1E-12 T 12-10-2018 IPR001610 PAC motif R615_14115 f839b1f8b5a014760f71f3f4b979530a 155 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 138 6.4E-20 T 12-10-2018 IPR000014 PAS domain R615_14115 f839b1f8b5a014760f71f3f4b979530a 155 Gene3D G3DSA:3.30.450.20 12 155 6.2E-48 T 12-10-2018 R615_09205 837a31a3437f95bc1eac840040205d21 728 Pfam PF02412 Thrombospondin type 3 repeat 90 130 0.0012 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_09205 837a31a3437f95bc1eac840040205d21 728 Gene3D G3DSA:4.10.1080.10 196 309 2.7E-8 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_09205 837a31a3437f95bc1eac840040205d21 728 Gene3D G3DSA:4.10.1080.10 24 128 1.1E-9 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_09205 837a31a3437f95bc1eac840040205d21 728 Gene3D G3DSA:2.160.20.110 585 688 7.3E-9 T 12-10-2018 R615_09205 837a31a3437f95bc1eac840040205d21 728 Gene3D G3DSA:2.160.20.110 390 584 2.0E-33 T 12-10-2018 R615_14265 6f69fca6d5f39ff1222816b01a3093c8 453 SUPERFAMILY SSF102405 118 328 4.58E-39 T 12-10-2018 R615_14265 6f69fca6d5f39ff1222816b01a3093c8 453 Gene3D G3DSA:3.30.1850.10 4 122 2.3E-36 T 12-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 R615_14265 6f69fca6d5f39ff1222816b01a3093c8 453 Pfam PF14793 Domain of unknown function (DUF4478) 8 112 1.4E-38 T 12-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 R615_14265 6f69fca6d5f39ff1222816b01a3093c8 453 Pfam PF03641 Possible lysine decarboxylase 189 328 1.3E-27 T 12-10-2018 IPR031100 LOG family R615_14265 6f69fca6d5f39ff1222816b01a3093c8 453 Pfam PF11892 Domain of unknown function (DUF3412) 332 451 3.3E-49 T 12-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 R615_14265 6f69fca6d5f39ff1222816b01a3093c8 453 Gene3D G3DSA:3.40.50.450 123 450 2.2E-106 T 12-10-2018 R615_02905 350ce71caf6e51fdef18d1afd4eaa806 144 Gene3D G3DSA:3.50.80.10 1 144 2.8E-55 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily R615_02905 350ce71caf6e51fdef18d1afd4eaa806 144 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 33.35 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 R615_02905 350ce71caf6e51fdef18d1afd4eaa806 144 SUPERFAMILY SSF69500 1 143 9.81E-54 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily R615_02905 350ce71caf6e51fdef18d1afd4eaa806 144 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 4 143 2.8E-53 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 R615_02905 350ce71caf6e51fdef18d1afd4eaa806 144 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 1.3E-58 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 R615_07110 da52564b47ee1ee4005d1e7b6565380f 286 SMART SM00090 2 228 3.7E-15 T 12-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 R615_07110 da52564b47ee1ee4005d1e7b6565380f 286 Gene3D G3DSA:1.10.510.10 139 241 9.0E-19 T 12-10-2018 R615_07110 da52564b47ee1ee4005d1e7b6565380f 286 Gene3D G3DSA:3.30.200.20 16 126 3.2E-6 T 12-10-2018 R615_07110 da52564b47ee1ee4005d1e7b6565380f 286 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 12-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 R615_07110 da52564b47ee1ee4005d1e7b6565380f 286 SUPERFAMILY SSF56112 18 225 7.02E-21 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_07110 da52564b47ee1ee4005d1e7b6565380f 286 Pfam PF01163 RIO1 family 30 223 6.9E-41 T 12-10-2018 R615_11940 b715ff6aed28bb89a2485990ae8a71b5 140 SUPERFAMILY SSF46458 24 139 7.61E-29 T 12-10-2018 IPR009050 Globin-like superfamily R615_11940 b715ff6aed28bb89a2485990ae8a71b5 140 Gene3D G3DSA:1.10.490.10 13 140 3.2E-37 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 R615_11940 b715ff6aed28bb89a2485990ae8a71b5 140 Pfam PF01152 Bacterial-like globin 25 136 1.1E-18 T 12-10-2018 IPR001486 Truncated hemoglobin GO:0019825 R615_11940 b715ff6aed28bb89a2485990ae8a71b5 140 PIRSF PIRSF002030 12 140 3.5E-34 T 12-10-2018 IPR016339 Truncated hemoglobin, group 1 R615_06240 91c243ebb9a4f091417f530490547bbf 372 Gene3D G3DSA:3.90.1150.10 16 363 9.4E-119 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_06240 91c243ebb9a4f091417f530490547bbf 372 Pfam PF00155 Aminotransferase class I and II 40 367 3.2E-58 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_06240 91c243ebb9a4f091417f530490547bbf 372 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 229 238 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 R615_06240 91c243ebb9a4f091417f530490547bbf 372 Gene3D G3DSA:3.40.640.10 53 277 9.4E-119 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_06240 91c243ebb9a4f091417f530490547bbf 372 SUPERFAMILY SSF53383 20 371 2.82E-86 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_06240 91c243ebb9a4f091417f530490547bbf 372 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 14 368 4.1E-113 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 R615_06240 91c243ebb9a4f091417f530490547bbf 372 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 371 62.293 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 138 151 1.7E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 152 165 1.7E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 108 1.7E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 261 275 1.7E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 Pfam PF00561 alpha/beta hydrolase fold 68 302 1.9E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 Gene3D G3DSA:3.40.50.1820 33 318 4.5E-62 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_12845 267d5543d32c8b0cd53dcbb33726463d 319 SUPERFAMILY SSF53474 56 316 7.43E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_06345 acf316ac6b8949f15fe40e1788472b39 173 Gene3D G3DSA:3.40.630.30 1 172 1.4E-34 T 12-10-2018 R615_06345 acf316ac6b8949f15fe40e1788472b39 173 SUPERFAMILY SSF55729 1 145 6.78E-18 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_06345 acf316ac6b8949f15fe40e1788472b39 173 Pfam PF13302 Acetyltransferase (GNAT) domain 9 141 2.5E-10 T 12-10-2018 IPR000182 GNAT domain R615_05915 3c173493715e3ca11ae77198df221c29 175 TIGRFAM TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT 7 173 1.3E-69 T 12-10-2018 IPR017776 FeS assembly SUF system protein SufT, putative R615_05915 3c173493715e3ca11ae77198df221c29 175 Gene3D G3DSA:3.30.300.130 75 174 1.7E-34 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily R615_05915 3c173493715e3ca11ae77198df221c29 175 Pfam PF01883 Iron-sulfur cluster assembly protein 79 151 3.5E-19 T 12-10-2018 IPR002744 MIP18 family-like R615_05915 3c173493715e3ca11ae77198df221c29 175 SUPERFAMILY SSF117916 77 171 3.14E-30 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily R615_04810 7e91bf7a027ff0c871f1c937055e5c94 451 Pfam PF04932 O-Antigen ligase 219 363 2.6E-13 T 12-10-2018 IPR007016 O-antigen ligase-related R615_05660 244236f63ea84693b482a7bde62fb9fd 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 R615_05660 244236f63ea84693b482a7bde62fb9fd 397 SUPERFAMILY SSF53383 3 390 4.89E-111 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_05660 244236f63ea84693b482a7bde62fb9fd 397 Gene3D G3DSA:3.40.640.10 64 288 2.6E-129 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_05660 244236f63ea84693b482a7bde62fb9fd 397 Gene3D G3DSA:3.90.1150.10 289 386 2.6E-129 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_05660 244236f63ea84693b482a7bde62fb9fd 397 Pfam PF00155 Aminotransferase class I and II 32 375 4.5E-62 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_14570 7dba0a5c4a9d4944316971ab37b9f240 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 2 148 31.397 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 R615_14570 7dba0a5c4a9d4944316971ab37b9f240 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 19 147 1.3E-47 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Pfam PF14450 Cell division protein FtsA 208 375 6.2E-27 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Hamap MF_02033 Cell division protein FtsA [ftsA]. 7 412 32.312 T 12-10-2018 IPR020823 Cell division protein FtsA R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Gene3D G3DSA:3.30.1490.110 88 170 6.2E-132 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 SUPERFAMILY SSF53067 199 378 3.02E-52 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Pfam PF14450 Cell division protein FtsA 12 194 2.0E-13 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Pfam PF02491 SHS2 domain inserted in FTSA 86 163 2.9E-34 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Gene3D G3DSA:3.30.420.40 14 373 6.2E-132 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 SUPERFAMILY SSF53067 9 198 1.86E-64 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 PIRSF PIRSF003101 2 412 6.6E-164 T 12-10-2018 IPR020823 Cell division protein FtsA R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 SMART SM00842 11 197 3.2E-107 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Gene3D G3DSA:3.90.640.10 236 301 6.2E-132 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 Gene3D G3DSA:3.30.420.40 198 353 6.2E-132 T 12-10-2018 R615_13380 05c8cb9c35ed332dadf32a31d4ee2963 412 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 11 378 4.0E-162 T 12-10-2018 IPR020823 Cell division protein FtsA R615_16445 0c8af052ffa4096134763ef34102c1b1 164 Pfam PF13673 Acetyltransferase (GNAT) domain 41 152 5.2E-12 T 12-10-2018 IPR000182 GNAT domain R615_16445 0c8af052ffa4096134763ef34102c1b1 164 SUPERFAMILY SSF55729 8 156 5.15E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_16445 0c8af052ffa4096134763ef34102c1b1 164 Gene3D G3DSA:3.40.630.30 5 162 2.0E-19 T 12-10-2018 R615_07105 0167a1420a00cc600b717622def3dd36 308 Pfam PF04116 Fatty acid hydroxylase superfamily 120 252 7.2E-26 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 SUPERFAMILY SSF51645 2 723 4.84E-301 T 12-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 Gene3D G3DSA:2.170.170.11 135 264 3.3E-273 T 12-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 Gene3D G3DSA:3.20.20.360 10 581 3.3E-273 T 12-10-2018 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 724 0.0 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 Gene3D G3DSA:1.20.1220.12 586 725 1.3E-68 T 12-10-2018 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 Pfam PF01274 Malate synthase 17 686 7.8E-164 T 12-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 R615_08165 5c6ecace30fa19d369e67cc1bf88f4d9 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 398.489 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 Gene3D G3DSA:3.30.450.20 36 186 9.2E-40 T 12-10-2018 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 SMART SM00304 210 262 8.8E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 Gene3D G3DSA:1.10.287.950 209 540 3.6E-66 T 12-10-2018 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 1.3E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 1.3E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 1.3E-23 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 Pfam PF17200 Single Cache domain 2 40 185 1.6E-31 T 12-10-2018 IPR033480 Single Cache domain 2 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 SMART SM01049 35 127 6.3E-22 T 12-10-2018 IPR033480 Single Cache domain 2 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 SUPERFAMILY SSF58104 230 539 1.11E-63 T 12-10-2018 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 503 3.7E-38 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_09775 b2e3b7bbffa27225a66a71778df9df94 547 SMART SM00283 277 538 4.6E-56 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_15000 ee8c43b7d74848367fbd47ce3a08218e 82 SUPERFAMILY SSF46785 7 80 1.49E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_15000 ee8c43b7d74848367fbd47ce3a08218e 82 Gene3D G3DSA:1.10.10.10 6 81 2.4E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15365 d731b8847e6578664b26e4707b7ae4cc 397 Gene3D G3DSA:3.40.640.10 43 291 2.9E-110 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_15365 d731b8847e6578664b26e4707b7ae4cc 397 Pfam PF00155 Aminotransferase class I and II 32 378 9.0E-44 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_15365 d731b8847e6578664b26e4707b7ae4cc 397 Gene3D G3DSA:3.90.1150.10 13 382 2.9E-110 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_15365 d731b8847e6578664b26e4707b7ae4cc 397 SUPERFAMILY SSF53383 2 395 9.65E-81 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_15365 d731b8847e6578664b26e4707b7ae4cc 397 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 394 8.2E-195 T 12-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 R615_12655 dbe74dc54b9ded97f21e500b528e9f6a 160 SUPERFAMILY SSF46785 2 133 1.26E-35 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_12655 dbe74dc54b9ded97f21e500b528e9f6a 160 Gene3D G3DSA:1.10.10.10 1 144 2.0E-52 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_12655 dbe74dc54b9ded97f21e500b528e9f6a 160 Pfam PF02082 Transcriptional regulator 1 83 1.3E-28 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type R615_12655 dbe74dc54b9ded97f21e500b528e9f6a 160 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 1.0E-45 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type R615_12655 dbe74dc54b9ded97f21e500b528e9f6a 160 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site R615_12655 dbe74dc54b9ded97f21e500b528e9f6a 160 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 1.5E-63 T 12-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 R615_10975 f599365439cadcf96e14c504dd078ace 352 Gene3D G3DSA:2.40.10.240 64 160 2.8E-115 T 12-10-2018 R615_10975 f599365439cadcf96e14c504dd078ace 352 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 338 46.366 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 R615_10975 f599365439cadcf96e14c504dd078ace 352 Pfam PF02547 Queuosine biosynthesis protein 4 337 3.3E-131 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 R615_10975 f599365439cadcf96e14c504dd078ace 352 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 337 2.2E-142 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 R615_10975 f599365439cadcf96e14c504dd078ace 352 Gene3D G3DSA:3.40.1780.10 14 336 2.8E-115 T 12-10-2018 R615_10975 f599365439cadcf96e14c504dd078ace 352 SUPERFAMILY SSF111337 1 337 4.97E-133 T 12-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 R615_10325 a3cbbd2a42f86f3e0196f566b5deb6f4 190 SUPERFAMILY SSF48150 6 186 2.69E-71 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 R615_10325 a3cbbd2a42f86f3e0196f566b5deb6f4 190 Pfam PF03352 Methyladenine glycosylase 12 183 3.5E-71 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 R615_10325 a3cbbd2a42f86f3e0196f566b5deb6f4 190 Gene3D G3DSA:1.10.340.30 4 189 3.2E-76 T 12-10-2018 R615_10325 a3cbbd2a42f86f3e0196f566b5deb6f4 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 6 183 2.1E-74 T 12-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 R615_15125 de5772dbc78e864d4308461e343d8442 446 SUPERFAMILY SSF52172 19 174 2.99E-33 T 12-10-2018 IPR011006 CheY-like superfamily R615_15125 de5772dbc78e864d4308461e343d8442 446 SUPERFAMILY SSF109604 217 374 1.02E-8 T 12-10-2018 R615_15125 de5772dbc78e864d4308461e343d8442 446 SMART SM00448 18 129 3.0E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_15125 de5772dbc78e864d4308461e343d8442 446 Gene3D G3DSA:1.10.3210.10 185 378 5.5E-35 T 12-10-2018 R615_15125 de5772dbc78e864d4308461e343d8442 446 Pfam PF13487 HD domain 265 324 1.7E-10 T 12-10-2018 R615_15125 de5772dbc78e864d4308461e343d8442 446 Gene3D G3DSA:3.40.50.2300 6 155 7.3E-33 T 12-10-2018 R615_15125 de5772dbc78e864d4308461e343d8442 446 Pfam PF00072 Response regulator receiver domain 21 129 2.7E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_03130 23e181c841c888743d2d0b90069058d0 118 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.978 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS R615_03130 23e181c841c888743d2d0b90069058d0 118 Gene3D G3DSA:3.30.460.10 1 116 1.1E-39 T 12-10-2018 R615_03130 23e181c841c888743d2d0b90069058d0 118 SUPERFAMILY SSF81301 1 108 5.72E-39 T 12-10-2018 R615_03130 23e181c841c888743d2d0b90069058d0 118 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 9.6E-29 T 12-10-2018 R615_03130 23e181c841c888743d2d0b90069058d0 118 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 2.6E-38 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS R615_10295 84124bafb78b40bbf7049b2ad46703ef 83 Gene3D G3DSA:1.10.260.40 1 83 1.9E-15 T 12-10-2018 R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 SUPERFAMILY SSF51735 1 223 3.08E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 Pfam PF00106 short chain dehydrogenase 3 183 4.3E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 4.9E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 4.9E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 4.9E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 Gene3D G3DSA:3.40.50.720 1 223 1.3E-56 T 12-10-2018 R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.3E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 2.3E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 2.3E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 2.3E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07310 77ecc32f735858cdf2f610cc7852ee00 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 2.3E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00630 62fc30599761c7742e74117dd2b329bf 495 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 12-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 R615_00630 62fc30599761c7742e74117dd2b329bf 495 SUPERFAMILY SSF52091 398 484 1.49E-11 T 12-10-2018 IPR036513 STAS domain superfamily R615_00630 62fc30599761c7742e74117dd2b329bf 495 Pfam PF00916 Sulfate permease family 14 344 2.8E-51 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 R615_00630 62fc30599761c7742e74117dd2b329bf 495 Gene3D G3DSA:3.30.750.24 388 483 1.0E-27 T 12-10-2018 IPR036513 STAS domain superfamily R615_00630 62fc30599761c7742e74117dd2b329bf 495 Pfam PF01740 STAS domain 399 486 3.1E-10 T 12-10-2018 IPR002645 STAS domain R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 SMART SM00345 13 71 6.3E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 Gene3D G3DSA:1.20.120.530 76 207 5.2E-10 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 SUPERFAMILY SSF48008 77 213 8.37E-8 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 Gene3D G3DSA:1.10.10.10 6 73 4.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 7.5E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 Pfam PF07729 FCD domain 82 195 4.7E-11 T 12-10-2018 IPR011711 GntR, C-terminal R615_11540 7e6f5dc15605066c4ab5c5a6307d0824 219 SUPERFAMILY SSF46785 2 75 1.67E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_06825 977e89d760141388c579f5a0f5f11870 294 SUPERFAMILY SSF103481 43 145 5.17E-8 T 12-10-2018 R615_06825 977e89d760141388c579f5a0f5f11870 294 Pfam PF00892 EamA-like transporter family 156 288 2.3E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_06825 977e89d760141388c579f5a0f5f11870 294 SUPERFAMILY SSF103481 189 288 8.76E-8 T 12-10-2018 R615_11930 8b4321ec937f6fe013ba5b6872887bfd 292 Gene3D G3DSA:3.40.50.1820 25 269 4.2E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11930 8b4321ec937f6fe013ba5b6872887bfd 292 SUPERFAMILY SSF53474 32 267 3.85E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11930 8b4321ec937f6fe013ba5b6872887bfd 292 Pfam PF07859 alpha/beta hydrolase fold 66 159 1.6E-11 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 R615_04055 a2f55cc233719579936f7b8a9ca96462 132 Pfam PF02033 Ribosome-binding factor A 7 114 2.5E-26 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 R615_04055 a2f55cc233719579936f7b8a9ca96462 132 Gene3D G3DSA:3.30.300.20 1 109 6.9E-32 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_04055 a2f55cc233719579936f7b8a9ca96462 132 SUPERFAMILY SSF89919 2 117 8.9E-29 T 12-10-2018 IPR023799 Ribosome-binding factor A domain superfamily R615_04055 a2f55cc233719579936f7b8a9ca96462 132 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 115 22.347 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 R615_04055 a2f55cc233719579936f7b8a9ca96462 132 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 6 116 1.2E-22 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 R615_04055 a2f55cc233719579936f7b8a9ca96462 132 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 10 102 1.0E-21 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 R615_01315 aa6c03baa64f18d38544e652d02f4d3e 305 SUPERFAMILY SSF53448 25 140 8.89E-9 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_01315 aa6c03baa64f18d38544e652d02f4d3e 305 Pfam PF13704 Glycosyl transferase family 2 28 118 3.7E-13 T 12-10-2018 R615_01315 aa6c03baa64f18d38544e652d02f4d3e 305 Gene3D G3DSA:3.90.550.10 22 181 1.9E-8 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_03785 c9488423c48c91981b519e56dd1ae3e5 509 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 5 227 7.9E-80 T 12-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein R615_03785 c9488423c48c91981b519e56dd1ae3e5 509 Gene3D G3DSA:3.40.50.620 5 229 3.6E-124 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_03785 c9488423c48c91981b519e56dd1ae3e5 509 Gene3D G3DSA:1.25.40.80 132 318 3.6E-124 T 12-10-2018 R615_03785 c9488423c48c91981b519e56dd1ae3e5 509 Gene3D G3DSA:1.10.10.1710 443 509 2.0E-25 T 12-10-2018 R615_03785 c9488423c48c91981b519e56dd1ae3e5 509 SUPERFAMILY SSF48173 230 493 3.66E-61 T 12-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 R615_03785 c9488423c48c91981b519e56dd1ae3e5 509 Gene3D G3DSA:1.10.579.10 322 442 1.3E-50 T 12-10-2018 R615_04120 369212f50aea36b3574895e26eadef6d 245 SMART SM00849 29 218 1.2E-11 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04120 369212f50aea36b3574895e26eadef6d 245 Pfam PF00753 Metallo-beta-lactamase superfamily 30 218 1.0E-16 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04120 369212f50aea36b3574895e26eadef6d 245 Gene3D G3DSA:3.60.15.10 4 236 1.3E-35 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_04120 369212f50aea36b3574895e26eadef6d 245 SUPERFAMILY SSF56281 6 237 1.15E-31 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 SMART SM00464 5 197 4.9E-69 T 12-10-2018 IPR003111 Lon, substrate-binding domain R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Gene3D G3DSA:3.40.50.300 309 485 6.3E-61 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 SUPERFAMILY SSF88697 5 196 1.07E-46 T 12-10-2018 IPR015947 PUA-like superfamily R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 347 483 9.2E-19 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Gene3D G3DSA:1.10.8.60 486 579 4.1E-28 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 SUPERFAMILY SSF54211 590 765 1.18E-58 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Gene3D G3DSA:3.30.230.10 580 767 6.5E-81 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 TIGRFAM TIGR00763 lon: endopeptidase La 7 766 5.5E-299 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 SUPERFAMILY SSF52540 307 581 2.12E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 5 196 3.2E-39 T 12-10-2018 IPR003111 Lon, substrate-binding domain R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 565 767 2.8E-95 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 SMART SM00382 343 489 5.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 590 606 3.0E-56 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 668 687 3.0E-56 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 721 739 3.0E-56 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 698 717 3.0E-56 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 351 370 3.0E-56 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Gene3D G3DSA:1.20.58.1480 115 240 3.5E-43 T 12-10-2018 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Hamap MF_01973 Lon protease [lon]. 6 767 69.763 T 12-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 PIRSF PIRSF001174 1 770 0.0 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 R615_08360 b40eb3d8d26620b6fa76cd387b2061ae 796 Gene3D G3DSA:2.30.130.40 2 111 7.3E-33 T 12-10-2018 R615_11960 58bbede3b1c8c3fd7bdef14b0c61d43e 207 Gene3D G3DSA:3.30.420.10 27 205 7.1E-26 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_11960 58bbede3b1c8c3fd7bdef14b0c61d43e 207 SUPERFAMILY SSF53098 26 202 8.1E-29 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_11960 58bbede3b1c8c3fd7bdef14b0c61d43e 207 SMART SM00479 31 204 1.2E-14 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_11960 58bbede3b1c8c3fd7bdef14b0c61d43e 207 Pfam PF00929 Exonuclease 33 192 3.8E-9 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_14875 93a540fc98395c33d7d90aeaf2889d13 330 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 152 166 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_14875 93a540fc98395c33d7d90aeaf2889d13 330 Gene3D G3DSA:3.30.2350.10 96 327 7.3E-45 T 12-10-2018 R615_14875 93a540fc98395c33d7d90aeaf2889d13 330 SUPERFAMILY SSF55120 108 296 3.2E-45 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_14875 93a540fc98395c33d7d90aeaf2889d13 330 Pfam PF00849 RNA pseudouridylate synthase 114 268 9.1E-24 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 Gene3D G3DSA:3.40.430.10 1 167 4.1E-61 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 PIRSF PIRSF000194 1 167 8.1E-65 T 12-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 Pfam PF00186 Dihydrofolate reductase 2 165 1.7E-61 T 12-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 12-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.6E-14 T 12-10-2018 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.6E-14 T 12-10-2018 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 PRINTS PR00070 Dihydrofolate reductase signature 98 112 1.6E-14 T 12-10-2018 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.6E-14 T 12-10-2018 R615_16820 e3c06368b1c18a518d0300c6e44c3380 167 SUPERFAMILY SSF53597 2 165 1.27E-60 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 SUPERFAMILY SSF51905 2 313 9.72E-53 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 Gene3D G3DSA:3.50.50.60 118 244 1.6E-123 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.2E-40 T 12-10-2018 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 4.2E-40 T 12-10-2018 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 4.2E-40 T 12-10-2018 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 4.2E-40 T 12-10-2018 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 4.2E-40 T 12-10-2018 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.6E-79 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 9.1E-49 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 Gene3D G3DSA:3.50.50.60 9 312 1.6E-123 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_04585 24cb22a7e1e4d59dbd9de0bf6b962393 318 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.7E-121 T 12-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 R615_02985 eda258a71537d15229ff860142d3777e 268 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 225 2.3E-20 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain R615_02985 eda258a71537d15229ff860142d3777e 268 PIRSF PIRSF003092 1 268 4.4E-92 T 12-10-2018 IPR025501 ATP binding protein MinD R615_02985 eda258a71537d15229ff860142d3777e 268 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 265 1.6E-111 T 12-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 R615_02985 eda258a71537d15229ff860142d3777e 268 SUPERFAMILY SSF52540 2 266 6.12E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02985 eda258a71537d15229ff860142d3777e 268 Gene3D G3DSA:3.40.50.300 1 258 8.5E-68 T 12-10-2018 R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 101 2.8E-24 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 19.425 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 SUPERFAMILY SSF50104 3 100 6.39E-32 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 Pfam PF00467 KOW motif 6 35 1.2E-5 T 12-10-2018 IPR005824 KOW R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 2 102 1.8E-35 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 SMART SM00739 3 30 1.2E-4 T 12-10-2018 IPR005824 KOW R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 Gene3D G3DSA:2.30.30.30 1 103 1.3E-37 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 R615_16125 8e385764b86bab12b4fad5f204cb44f7 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 12-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_01840 8437b6e0cba5a75e001f21ea1ab23dda 990 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 94 168 3.0E-15 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal R615_01840 8437b6e0cba5a75e001f21ea1ab23dda 990 Pfam PF05860 haemagglutination activity domain 73 167 5.7E-16 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal R615_01840 8437b6e0cba5a75e001f21ea1ab23dda 990 Gene3D G3DSA:2.160.20.10 59 330 2.3E-42 T 12-10-2018 IPR012334 Pectin lyase fold R615_01840 8437b6e0cba5a75e001f21ea1ab23dda 990 SMART SM00912 55 173 1.1E-23 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal R615_01840 8437b6e0cba5a75e001f21ea1ab23dda 990 SUPERFAMILY SSF51126 73 320 1.13E-19 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor R615_09420 dddf8216a871e4b45719a8118b2b650f 546 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 15 546 5.9E-66 T 12-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) R615_09420 dddf8216a871e4b45719a8118b2b650f 546 SUPERFAMILY SSF56935 26 487 3.71E-43 T 12-10-2018 R615_09420 dddf8216a871e4b45719a8118b2b650f 546 Gene3D G3DSA:2.40.160.60 25 518 1.3E-61 T 12-10-2018 R615_10900 df8836cdb9e0fae896a03c0b7f54d15b 147 Pfam PF07308 Protein of unknown function (DUF1456) 79 145 9.5E-23 T 12-10-2018 IPR009921 Domain of unknown function DUF1456 R615_10900 df8836cdb9e0fae896a03c0b7f54d15b 147 Pfam PF07308 Protein of unknown function (DUF1456) 1 64 1.5E-21 T 12-10-2018 IPR009921 Domain of unknown function DUF1456 R615_14140 b957d2962279c87e762d69e01efd6863 140 SUPERFAMILY SSF82784 1 135 2.36E-39 T 12-10-2018 IPR036102 OsmC/Ohr superfamily R615_14140 b957d2962279c87e762d69e01efd6863 140 Gene3D G3DSA:3.30.300.20 39 137 3.4E-30 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_14140 b957d2962279c87e762d69e01efd6863 140 Gene3D G3DSA:2.20.25.10 1 32 2.1E-16 T 12-10-2018 R615_14140 b957d2962279c87e762d69e01efd6863 140 Pfam PF02566 OsmC-like protein 34 132 5.0E-18 T 12-10-2018 IPR003718 OsmC/Ohr family R615_09345 f297bad626a650643f94f6cec807a2fe 1035 Hamap MF_00970 Ribonuclease E [rne]. 1 984 33.218 T 12-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 R615_09345 f297bad626a650643f94f6cec807a2fe 1035 SUPERFAMILY SSF50249 37 121 5.95E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_09345 f297bad626a650643f94f6cec807a2fe 1035 Pfam PF00575 S1 RNA binding domain 33 114 3.6E-15 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_09345 f297bad626a650643f94f6cec807a2fe 1035 SMART SM00316 34 115 3.5E-13 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_09345 f297bad626a650643f94f6cec807a2fe 1035 Pfam PF10150 Ribonuclease E/G family 117 386 5.1E-96 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 R615_09345 f297bad626a650643f94f6cec807a2fe 1035 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 10 420 2.5E-165 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 R615_09345 f297bad626a650643f94f6cec807a2fe 1035 Gene3D G3DSA:3.40.1260.20 396 505 9.0E-37 T 12-10-2018 R615_09345 f297bad626a650643f94f6cec807a2fe 1035 Gene3D G3DSA:2.40.50.140 28 121 7.3E-32 T 12-10-2018 R615_05450 e5831b462524799f7749451851d430ea 893 PIRSF PIRSF006288 13 891 1.1E-275 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 R615_05450 e5831b462524799f7749451851d430ea 893 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 43 882 4.5E-256 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 R615_05450 e5831b462524799f7749451851d430ea 893 Pfam PF01966 HD domain 460 590 1.5E-7 T 12-10-2018 IPR006674 HD domain R615_05450 e5831b462524799f7749451851d430ea 893 SUPERFAMILY SSF55021 809 863 2.5E-8 T 12-10-2018 R615_05450 e5831b462524799f7749451851d430ea 893 Gene3D G3DSA:1.10.3210.10 448 618 2.7E-7 T 12-10-2018 R615_05450 e5831b462524799f7749451851d430ea 893 SMART SM00471 455 602 7.1E-11 T 12-10-2018 IPR003607 HD/PDEase domain R615_05450 e5831b462524799f7749451851d430ea 893 Pfam PF08335 GlnD PII-uridylyltransferase 183 321 1.5E-31 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 R615_05450 e5831b462524799f7749451851d430ea 893 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 893 266.524 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 R615_05450 e5831b462524799f7749451851d430ea 893 SUPERFAMILY SSF81593 191 293 1.18E-7 T 12-10-2018 R615_05450 e5831b462524799f7749451851d430ea 893 SUPERFAMILY SSF81301 36 175 5.82E-23 T 12-10-2018 R615_05450 e5831b462524799f7749451851d430ea 893 SUPERFAMILY SSF55021 700 773 7.02E-6 T 12-10-2018 R615_05450 e5831b462524799f7749451851d430ea 893 SUPERFAMILY SSF81891 352 602 3.92E-14 T 12-10-2018 R615_10270 e23f0cad9fa6de909e74a4d344e75517 87 SUPERFAMILY SSF47598 3 41 2.4E-8 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 R615_10270 e23f0cad9fa6de909e74a4d344e75517 87 Pfam PF01402 Ribbon-helix-helix protein, copG family 4 41 1.0E-4 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 R615_07870 a2ff6df32e8ce75e09a77ccb545a0993 128 Gene3D G3DSA:4.10.520.10 29 127 1.9E-13 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_07870 a2ff6df32e8ce75e09a77ccb545a0993 128 SUPERFAMILY SSF47729 30 126 9.42E-10 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_07870 a2ff6df32e8ce75e09a77ccb545a0993 128 Pfam PF00216 Bacterial DNA-binding protein 30 126 1.2E-11 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 SUPERFAMILY SSF103025 3 276 4.91E-90 T 12-10-2018 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 PIRSF PIRSF006487 1 360 1.0E-84 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 SUPERFAMILY SSF101790 268 357 2.29E-26 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 252 8.9E-86 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Gene3D G3DSA:4.10.1250.10 230 273 7.3E-27 T 12-10-2018 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Gene3D G3DSA:2.40.30.110 277 360 6.3E-29 T 12-10-2018 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 354 42.847 T 12-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 354 1.9E-128 T 12-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 260 349 7.9E-20 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Gene3D G3DSA:3.30.1360.120 7 229 1.5E-81 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 R615_13535 5587cbe1c1142a5b0508b9b2a256aa15 360 Gene3D G3DSA:3.30.70.1400 51 137 1.5E-81 T 12-10-2018 R615_14590 6355241676695265259751eb892aaa33 214 Gene3D G3DSA:3.30.70.270 22 195 1.2E-58 T 12-10-2018 R615_14590 6355241676695265259751eb892aaa33 214 SUPERFAMILY SSF55073 33 190 9.42E-50 T 12-10-2018 IPR029787 Nucleotide cyclase R615_14590 6355241676695265259751eb892aaa33 214 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 25 189 6.0E-55 T 12-10-2018 IPR000160 GGDEF domain R615_14590 6355241676695265259751eb892aaa33 214 SMART SM00267 17 190 4.8E-59 T 12-10-2018 IPR000160 GGDEF domain R615_14590 6355241676695265259751eb892aaa33 214 Pfam PF00990 Diguanylate cyclase, GGDEF domain 29 186 6.7E-49 T 12-10-2018 IPR000160 GGDEF domain R615_16155 7d01bd8da5a013adee96622f4f973e54 111 ProSitePatterns PS00464 Ribosomal protein L22 signature. 84 108 - T 12-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16155 7d01bd8da5a013adee96622f4f973e54 111 Gene3D G3DSA:3.90.470.10 1 111 8.9E-45 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 R615_16155 7d01bd8da5a013adee96622f4f973e54 111 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 2 111 28.482 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16155 7d01bd8da5a013adee96622f4f973e54 111 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 6 108 2.0E-46 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16155 7d01bd8da5a013adee96622f4f973e54 111 Pfam PF00237 Ribosomal protein L22p/L17e 7 108 3.2E-35 T 12-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 R615_16155 7d01bd8da5a013adee96622f4f973e54 111 SUPERFAMILY SSF54843 3 111 1.44E-41 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Gene3D G3DSA:3.40.50.720 92 255 4.2E-111 T 12-10-2018 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Gene3D G3DSA:3.40.50.720 2 273 4.2E-111 T 12-10-2018 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 28 111 5.1E-17 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 SUPERFAMILY SSF52283 4 103 2.76E-19 T 12-10-2018 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 195 211 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Pfam PF11890 Domain of unknown function (DUF3410) 287 360 4.8E-13 T 12-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Gene3D G3DSA:3.30.1370.170 293 377 1.7E-14 T 12-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 360 43.528 T 12-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 SUPERFAMILY SSF51735 91 254 1.49E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07980 870ebc711ac58d7bba25e6979a0cc44e 380 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 254 4.5E-32 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Gene3D G3DSA:1.10.1160.10 265 343 3.7E-33 T 12-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 SUPERFAMILY SSF52374 15 341 9.19E-99 T 12-10-2018 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 31 338 5.3E-108 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 SUPERFAMILY SSF50715 344 554 1.67E-60 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Gene3D G3DSA:2.40.240.10 344 552 1.2E-67 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Gene3D G3DSA:3.90.800.10 105 213 6.3E-104 T 12-10-2018 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 38 49 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Gene3D G3DSA:2.40.240.10 352 470 1.2E-67 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Gene3D G3DSA:3.40.50.620 32 252 6.3E-104 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 555 50.38 T 12-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 47 1.4E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 49 60 1.4E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 214 224 1.4E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 64 77 1.4E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 344 534 6.1E-48 T 12-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 R615_08270 448fd8f4b528669502668cc5c3e3d17c 560 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 32 554 4.6E-223 T 12-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_14005 4cf5ed9717d68814e0921bdd12c0faa7 370 SUPERFAMILY SSF56935 51 370 4.58E-34 T 12-10-2018 R615_14005 4cf5ed9717d68814e0921bdd12c0faa7 370 Gene3D G3DSA:2.40.160.10 47 370 6.3E-10 T 12-10-2018 IPR023614 Porin domain superfamily R615_14005 4cf5ed9717d68814e0921bdd12c0faa7 370 Pfam PF13609 Gram-negative porin 49 356 4.6E-8 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 SUPERFAMILY SSF111369 80 233 5.89E-12 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Gene3D G3DSA:2.40.50.100 85 118 1.9E-7 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Gene3D G3DSA:2.40.50.100 122 155 4.6E-35 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Gene3D G3DSA:2.40.30.170 156 234 4.6E-35 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Gene3D G3DSA:2.40.30.170 71 84 1.9E-7 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 121 228 1.8E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Gene3D G3DSA:2.40.420.20 59 70 1.9E-7 T 12-10-2018 R615_09125 9183f2b54c505709256ed5a1a9ea8286 313 Gene3D G3DSA:2.40.420.20 235 291 4.6E-35 T 12-10-2018 R615_11295 37143de3cd0a037e91210d1fd609531f 272 Gene3D G3DSA:2.30.30.60 122 170 4.8E-10 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily R615_11295 37143de3cd0a037e91210d1fd609531f 272 Pfam PF00924 Mechanosensitive ion channel 64 264 1.9E-31 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 R615_11295 37143de3cd0a037e91210d1fd609531f 272 SUPERFAMILY SSF50182 106 168 1.11E-16 T 12-10-2018 IPR010920 LSM domain superfamily R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 539 646 5.3E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Pfam PF07696 7TMR-DISM extracellular 2 34 165 1.4E-21 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Gene3D G3DSA:3.40.50.2300 762 891 1.7E-33 T 12-10-2018 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 SMART SM00388 426 491 2.2E-24 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 SMART SM00448 764 882 3.3E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Gene3D G3DSA:1.10.287.130 390 489 2.0E-26 T 12-10-2018 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 SMART SM00387 538 649 3.0E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 SUPERFAMILY SSF47384 415 492 2.94E-21 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Pfam PF07695 7TM diverse intracellular signalling 177 379 2.8E-32 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 SUPERFAMILY SSF55874 480 647 3.01E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Gene3D G3DSA:2.60.40.2380 42 171 2.1E-17 T 12-10-2018 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Gene3D G3DSA:3.30.565.10 490 649 4.7E-46 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Pfam PF00072 Response regulator receiver domain 766 880 2.1E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 627 8.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 602 8.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 588 8.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 646 8.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 SUPERFAMILY SSF52172 763 885 2.28E-30 T 12-10-2018 IPR011006 CheY-like superfamily R615_07135 0eced2537692d3e63393ed3b4e1d6380 894 Pfam PF00512 His Kinase A (phospho-acceptor) domain 426 491 3.7E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_10630 459162c3a6cca8ab812deb1001049d7c 242 Gene3D G3DSA:3.30.70.1230 40 234 1.3E-19 T 12-10-2018 IPR029787 Nucleotide cyclase R615_10630 459162c3a6cca8ab812deb1001049d7c 242 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 44 201 5.3E-9 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 R615_10630 459162c3a6cca8ab812deb1001049d7c 242 SUPERFAMILY SSF55073 39 198 4.24E-19 T 12-10-2018 IPR029787 Nucleotide cyclase R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 145 356 1.2E-73 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 347 356 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 SUPERFAMILY SSF52540 92 362 3.19E-96 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 SMART SM00382 157 340 7.3E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 22 435 4.3E-197 T 12-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 19 436 1.6E-178 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 42 84 3.4E-4 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_05115 83e802ffa12f28007f5a4eb67a109e6c 443 Gene3D G3DSA:3.40.50.12240 14 439 2.0E-159 T 12-10-2018 R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 Hamap MF_01227 CTP synthase [pyrG]. 2 539 49.939 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 Pfam PF00117 Glutamine amidotransferase class-I 300 533 7.1E-59 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 Gene3D G3DSA:3.40.50.300 1 284 2.4E-127 T 12-10-2018 R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 SUPERFAMILY SSF52317 287 539 8.43E-88 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 SUPERFAMILY SSF52540 1 268 8.21E-119 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 Gene3D G3DSA:3.40.50.880 285 540 4.0E-105 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 Pfam PF06418 CTP synthase N-terminus 3 265 2.1E-122 T 12-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 R615_02225 10dc74c316742ee18c92dfd2de7747b6 540 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 4.0E-246 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 R615_04225 a626d5ed915541058da48f5df2b4a566 627 Pfam PF00270 DEAD/DEAH box helicase 32 197 3.3E-49 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_04225 a626d5ed915541058da48f5df2b4a566 627 Pfam PF00271 Helicase conserved C-terminal domain 234 341 6.5E-30 T 12-10-2018 IPR001650 Helicase, C-terminal R615_04225 a626d5ed915541058da48f5df2b4a566 627 SMART SM00487 26 224 2.1E-63 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_04225 a626d5ed915541058da48f5df2b4a566 627 Pfam PF03880 DbpA RNA binding domain 502 572 1.4E-20 T 12-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain R615_04225 a626d5ed915541058da48f5df2b4a566 627 Gene3D G3DSA:3.40.50.300 215 463 1.4E-52 T 12-10-2018 R615_04225 a626d5ed915541058da48f5df2b4a566 627 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_04225 a626d5ed915541058da48f5df2b4a566 627 SUPERFAMILY SSF52540 75 362 2.7E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04225 a626d5ed915541058da48f5df2b4a566 627 Gene3D G3DSA:3.40.50.300 2 213 1.3E-72 T 12-10-2018 R615_04225 a626d5ed915541058da48f5df2b4a566 627 SMART SM00490 260 341 1.9E-33 T 12-10-2018 IPR001650 Helicase, C-terminal R615_04225 a626d5ed915541058da48f5df2b4a566 627 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 574 44.171 T 12-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 R615_04225 a626d5ed915541058da48f5df2b4a566 627 Gene3D G3DSA:3.30.70.330 502 575 1.3E-11 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily R615_04835 3b7be180d2c0f5c88e75b44f69b54508 349 Pfam PF04230 Polysaccharide pyruvyl transferase 15 279 2.3E-17 T 12-10-2018 IPR007345 Polysaccharide pyruvyl transferase R615_15185 34fec69d7f7224c6c864bf4784c76288 89 PIRSF PIRSF028784 1 89 8.4E-28 T 12-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 R615_15185 34fec69d7f7224c6c864bf4784c76288 89 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 32 82 4.6E-19 T 12-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 SMART SM00849 166 393 3.3E-21 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 Pfam PF00753 Metallo-beta-lactamase superfamily 162 392 3.2E-28 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 Gene3D G3DSA:1.25.40.880 429 568 7.9E-58 T 12-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 Gene3D G3DSA:3.60.15.30 65 427 4.0E-144 T 12-10-2018 R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 SUPERFAMILY SSF56281 67 569 5.32E-144 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 Gene3D G3DSA:3.30.1050.10 573 701 4.0E-32 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 Pfam PF14863 Alkyl sulfatase dimerisation 429 567 9.7E-58 T 12-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 Pfam PF14864 Alkyl sulfatase C-terminal 578 700 9.1E-31 T 12-10-2018 IPR029229 Alkyl sulfatase, C-terminal R615_17080 bdb8a98df4d2cb8cc5b7c5cadab57409 701 SUPERFAMILY SSF55718 580 700 7.53E-27 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily R615_01685 852629855b80ad89fb08344aae2c9572 178 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 18 151 1.5E-28 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN R615_01685 852629855b80ad89fb08344aae2c9572 178 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 12 153 3.5E-28 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN R615_01685 852629855b80ad89fb08344aae2c9572 178 Gene3D G3DSA:2.60.40.4150 32 162 2.4E-25 T 12-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 Gene3D G3DSA:3.20.20.70 131 281 4.0E-112 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 SUPERFAMILY SSF51690 123 291 5.89E-60 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 32 120 2.0E-27 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 24 290 1.1E-99 T 12-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 PIRSF PIRSF006250 14 293 3.5E-107 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 SUPERFAMILY SSF54675 14 121 2.5E-33 T 12-10-2018 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 123 290 4.5E-60 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 R615_13940 ee1283f3371c2af83b7959ee4125ce48 293 Gene3D G3DSA:3.90.1170.20 18 290 4.0E-112 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 R615_12355 ada7fea162f372ce5eb501ce49991ec7 202 Pfam PF06930 Protein of unknown function (DUF1282) 9 182 4.1E-35 T 12-10-2018 IPR009698 Protein of unknown function DUF1282 R615_01285 c002d25d450ec5de3e4ab3c975a1f6bd 242 SUPERFAMILY SSF53448 2 236 2.18E-17 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_01285 c002d25d450ec5de3e4ab3c975a1f6bd 242 Gene3D G3DSA:3.90.550.10 1 242 9.8E-53 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_01285 c002d25d450ec5de3e4ab3c975a1f6bd 242 PIRSF PIRSF028162 1 242 8.1E-87 T 12-10-2018 IPR016873 Capsular polysaccharide biosynthesis protein, BcbE, predicted R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 Pfam PF00588 SpoU rRNA Methylase family 97 237 2.0E-39 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 SUPERFAMILY SSF75217 93 244 4.91E-48 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 243 3.3E-82 T 12-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 SUPERFAMILY SSF55315 3 74 7.42E-15 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 77 4.3E-14 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 244 42.635 T 12-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 Gene3D G3DSA:3.40.1280.10 79 244 3.6E-61 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 Gene3D G3DSA:3.30.1330.30 1 76 6.5E-20 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like R615_15050 ce90c127518168e9fd32734e2bb89d3f 249 SMART SM00967 5 80 3.4E-11 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 R615_15450 436f7fbc8206a8ddc9a229c461fb370b 169 Pfam PF04115 Ureidoglycolate lyase 6 159 5.7E-42 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 R615_15450 436f7fbc8206a8ddc9a229c461fb370b 169 Gene3D G3DSA:2.60.120.480 5 169 7.9E-49 T 12-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 R615_15450 436f7fbc8206a8ddc9a229c461fb370b 169 PIRSF PIRSF017306 2 160 7.8E-34 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 R615_15450 436f7fbc8206a8ddc9a229c461fb370b 169 SUPERFAMILY SSF51182 6 158 1.91E-48 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_07275 52cb676ab43ac0ccc0db96a00757efa8 403 Pfam PF03116 NQR2, RnfD, RnfE family 41 395 4.6E-109 T 12-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 R615_07275 52cb676ab43ac0ccc0db96a00757efa8 403 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 398 3.3E-182 T 12-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 R615_07275 52cb676ab43ac0ccc0db96a00757efa8 403 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 402 37.324 T 12-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 R615_07275 52cb676ab43ac0ccc0db96a00757efa8 403 PIRSF PIRSF016055 1 403 1.2E-197 T 12-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 R615_10710 e942a4b6fbd63113efa32f5c446d1a6a 192 SUPERFAMILY SSF55811 30 174 3.11E-29 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_10710 e942a4b6fbd63113efa32f5c446d1a6a 192 Pfam PF00293 NUDIX domain 31 106 1.8E-9 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_10710 e942a4b6fbd63113efa32f5c446d1a6a 192 Gene3D G3DSA:3.90.79.10 6 180 4.4E-44 T 12-10-2018 R615_13275 1a4a4c220711a640c9466b8c8a976006 195 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 184 35.076 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 R615_13275 1a4a4c220711a640c9466b8c8a976006 195 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 6 192 5.7E-66 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 R615_13275 1a4a4c220711a640c9466b8c8a976006 195 Pfam PF01195 Peptidyl-tRNA hydrolase 7 190 1.3E-54 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 R615_13275 1a4a4c220711a640c9466b8c8a976006 195 SUPERFAMILY SSF53178 5 193 4.19E-70 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 R615_13275 1a4a4c220711a640c9466b8c8a976006 195 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 R615_13275 1a4a4c220711a640c9466b8c8a976006 195 Gene3D G3DSA:3.40.50.1470 2 195 2.6E-69 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 R615_06105 c0ef6a8d124ff874233182bf6788b011 130 Pfam PF09361 Phasin protein 8 107 7.3E-18 T 12-10-2018 IPR018968 Phasin R615_06105 c0ef6a8d124ff874233182bf6788b011 130 TIGRFAM TIGR02809 phasin_3: phasin family protein 5 106 5.2E-30 T 12-10-2018 IPR014176 Phasin, subfamily 3 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 SUPERFAMILY SSF52540 6 189 1.09E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 Gene3D G3DSA:3.40.50.300 5 188 9.0E-44 T 12-10-2018 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 Pfam PF02421 Ferrous iron transport protein B 6 160 9.1E-60 T 12-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 692 1.3E-188 T 12-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 4.5E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 4.5E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 Pfam PF07670 Nucleoside recognition 357 448 7.0E-12 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 Pfam PF07670 Nucleoside recognition 518 695 2.6E-34 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 Pfam PF07664 Ferrous iron transport protein B C terminus 460 512 2.2E-21 T 12-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 R615_12395 87a3ad7a9b660b13bb53c37217eb342d 765 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 159 9.9E-14 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 SMART SM00382 58 185 3.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 Gene3D G3DSA:3.40.50.300 27 188 6.7E-37 T 12-10-2018 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 Gene3D G3DSA:1.10.8.60 189 262 4.6E-30 T 12-10-2018 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 17 242 1.2E-115 T 12-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 260 333 1.2E-32 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 Gene3D G3DSA:1.10.10.10 264 342 6.9E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 347 177.551 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 31 333 2.4E-146 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 SUPERFAMILY SSF46785 264 337 2.55E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 257 340 7.0E-31 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 R615_06950 66d472ee4be0433ae77dc1f3f80b1708 347 SUPERFAMILY SSF52540 27 259 1.08E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16485 a874baf50bdf1c67110bf7b4fcd51b65 369 SUPERFAMILY SSF52540 2 335 1.88E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16485 a874baf50bdf1c67110bf7b4fcd51b65 369 SMART SM00382 120 245 0.0024 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_16485 a874baf50bdf1c67110bf7b4fcd51b65 369 Gene3D G3DSA:3.30.450.90 1 97 5.2E-31 T 12-10-2018 R615_16485 a874baf50bdf1c67110bf7b4fcd51b65 369 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 1 342 2.2E-133 T 12-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 R615_16485 a874baf50bdf1c67110bf7b4fcd51b65 369 Pfam PF00437 Type II/IV secretion system protein 78 266 9.9E-35 T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_16485 a874baf50bdf1c67110bf7b4fcd51b65 369 Gene3D G3DSA:3.40.50.300 99 354 1.2E-86 T 12-10-2018 R615_00620 158b20abb498aae559b81e7332853e8a 457 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.7E-31 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 R615_00620 158b20abb498aae559b81e7332853e8a 457 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.7E-31 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 R615_00620 158b20abb498aae559b81e7332853e8a 457 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.7E-31 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 R615_00620 158b20abb498aae559b81e7332853e8a 457 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.7E-31 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 R615_00620 158b20abb498aae559b81e7332853e8a 457 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.7E-31 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 R615_00620 158b20abb498aae559b81e7332853e8a 457 SUPERFAMILY SSF51735 232 375 4.99E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00620 158b20abb498aae559b81e7332853e8a 457 Pfam PF02254 TrkA-N domain 3 106 3.9E-27 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 R615_00620 158b20abb498aae559b81e7332853e8a 457 Pfam PF02254 TrkA-N domain 234 349 1.6E-24 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 R615_00620 158b20abb498aae559b81e7332853e8a 457 Gene3D G3DSA:3.40.50.720 2 138 4.4E-47 T 12-10-2018 R615_00620 158b20abb498aae559b81e7332853e8a 457 SUPERFAMILY SSF116726 360 437 2.09E-8 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_00620 158b20abb498aae559b81e7332853e8a 457 Gene3D G3DSA:3.30.70.1450 366 457 1.4E-29 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_00620 158b20abb498aae559b81e7332853e8a 457 SUPERFAMILY SSF51735 1 150 1.42E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00620 158b20abb498aae559b81e7332853e8a 457 SUPERFAMILY SSF116726 135 223 9.29E-12 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_00620 158b20abb498aae559b81e7332853e8a 457 Pfam PF02080 TrkA-C domain 155 224 2.1E-11 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 R615_00620 158b20abb498aae559b81e7332853e8a 457 Pfam PF02080 TrkA-C domain 390 450 1.4E-10 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 R615_00620 158b20abb498aae559b81e7332853e8a 457 Gene3D G3DSA:3.40.50.720 232 365 7.9E-36 T 12-10-2018 R615_00620 158b20abb498aae559b81e7332853e8a 457 Gene3D G3DSA:3.30.70.1450 139 231 5.4E-22 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 337 1.3E-120 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 338 37.748 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 64 2.3E-18 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 SUPERFAMILY SSF47648 1 67 5.23E-20 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 Pfam PF00591 Glycosyl transferase family, a/b domain 74 328 1.3E-96 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 Gene3D G3DSA:3.40.1030.10 71 346 7.8E-100 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 Gene3D G3DSA:1.20.970.10 1 70 5.8E-28 T 12-10-2018 R615_14155 7aafb241ad0d638e399d7af56e193c31 348 SUPERFAMILY SSF52418 74 341 1.18E-89 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 Gene3D G3DSA:1.20.1440.90 275 386 5.0E-24 T 12-10-2018 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 136 147 - T 12-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 SUPERFAMILY SSF51621 9 877 4.24E-295 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 877 18.056 T 12-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 Pfam PF00311 Phosphoenolpyruvate carboxylase 131 877 1.7E-276 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 534 546 - T 12-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 188 204 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 532 552 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 247 262 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 706 732 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 135 148 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 383 403 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_12720 8e5b91a7dcaf085047c11452c78a0408 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 574 603 1.6E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 R615_09190 68d35961fed90278762749090236df5c 127 Gene3D G3DSA:3.40.30.10 39 127 1.2E-14 T 12-10-2018 R615_09190 68d35961fed90278762749090236df5c 127 SUPERFAMILY SSF52833 44 125 6.74E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_09190 68d35961fed90278762749090236df5c 127 Pfam PF13417 Glutathione S-transferase, N-terminal domain 47 123 5.5E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_08405 3e9d4b322d142abcf3673df7658a3532 234 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 214 2.0E-69 T 12-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_08405 3e9d4b322d142abcf3673df7658a3532 234 Pfam PF00929 Exonuclease 4 164 1.3E-34 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_08405 3e9d4b322d142abcf3673df7658a3532 234 Gene3D G3DSA:3.30.420.10 1 179 5.8E-56 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_08405 3e9d4b322d142abcf3673df7658a3532 234 SMART SM00479 2 173 1.6E-46 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_08405 3e9d4b322d142abcf3673df7658a3532 234 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 232 2.4E-87 T 12-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_08405 3e9d4b322d142abcf3673df7658a3532 234 SUPERFAMILY SSF53098 2 174 1.76E-54 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 SUPERFAMILY SSF51735 1 180 6.48E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 SMART SM00846 3 156 2.3E-78 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 SUPERFAMILY SSF55347 156 318 4.37E-53 T 12-10-2018 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 316 4.9E-46 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 106 6.2E-35 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 PIRSF PIRSF000149 1 334 4.3E-125 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 Gene3D G3DSA:3.40.50.720 4 329 8.4E-125 T 12-10-2018 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 233 250 1.0E-20 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 1.0E-20 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 1.0E-20 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 1.0E-20 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 273 288 1.0E-20 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15405 1ef63b43d6489d37b1c2e21ff6a9ce62 335 Gene3D G3DSA:3.30.360.10 155 319 8.4E-125 T 12-10-2018 R615_08060 99902965a829b66804c1f796dd19133b 193 PIRSF PIRSF000232 1 186 1.5E-54 T 12-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like R615_08060 99902965a829b66804c1f796dd19133b 193 SUPERFAMILY SSF55469 1 183 2.62E-34 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 R615_08060 99902965a829b66804c1f796dd19133b 193 Pfam PF00881 Nitroreductase family 7 163 4.7E-22 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 R615_08060 99902965a829b66804c1f796dd19133b 193 Gene3D G3DSA:3.40.109.10 1 174 2.9E-33 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 R615_14545 583392ad825cf3cfc44f65f224d35dfa 295 Gene3D G3DSA:3.90.226.10 1 218 2.6E-70 T 12-10-2018 R615_14545 583392ad825cf3cfc44f65f224d35dfa 295 Gene3D G3DSA:1.10.12.10 221 277 2.1E-5 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal R615_14545 583392ad825cf3cfc44f65f224d35dfa 295 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 277 9.0E-55 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 R615_14545 583392ad825cf3cfc44f65f224d35dfa 295 SUPERFAMILY SSF52096 1 276 4.85E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_06595 6f3f5a24aefcecb6c0f1aea39b44d8b4 183 PIRSF PIRSF000441 6 182 6.8E-42 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 R615_06595 6f3f5a24aefcecb6c0f1aea39b44d8b4 183 SUPERFAMILY SSF51161 60 170 1.08E-26 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_06595 6f3f5a24aefcecb6c0f1aea39b44d8b4 183 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 153 4.2E-9 T 12-10-2018 IPR001451 Hexapeptide repeat R615_06595 6f3f5a24aefcecb6c0f1aea39b44d8b4 183 Gene3D G3DSA:2.160.10.10 56 182 5.1E-23 T 12-10-2018 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SMART SM01211 1034 1288 2.3E-152 T 12-10-2018 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF55326 613 809 1.91E-64 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF109736 152 217 9.29E-21 T 12-10-2018 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF56042 820 1028 9.12E-51 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Gene3D G3DSA:1.10.8.750 150 211 2.6E-27 T 12-10-2018 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Gene3D G3DSA:3.90.650.10 414 599 7.5E-57 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Pfam PF02769 AIR synthase related protein, C-terminal domain 425 582 6.2E-26 T 12-10-2018 IPR010918 PurM-like, C-terminal domain R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Pfam PF02769 AIR synthase related protein, C-terminal domain 831 961 1.0E-13 T 12-10-2018 IPR010918 PurM-like, C-terminal domain R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF56042 424 648 8.37E-52 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 4 1287 0.0 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Gene3D G3DSA:3.30.1330.10 223 413 5.8E-24 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Gene3D G3DSA:3.30.1330.10 608 801 9.5E-19 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1289 20.976 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Gene3D G3DSA:3.40.50.880 978 1289 1.4E-131 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF52317 1034 1288 1.25E-94 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF55326 218 421 4.53E-64 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 SUPERFAMILY SSF82697 1 149 4.08E-47 T 12-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Gene3D G3DSA:3.90.650.10 802 977 6.0E-30 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_04410 ed3333405d66a58e3f652e28ba52ed3d 1291 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1034 1288 6.3E-108 T 12-10-2018 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 SUPERFAMILY SSF50249 3 68 1.14E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12415 718e86759d07a9c5d98f07a2904492fc 69 SMART SM00357 6 69 3.5E-29 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.2E-28 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 12-10-2018 IPR019844 Cold-shock conserved site R615_12415 718e86759d07a9c5d98f07a2904492fc 69 PRINTS PR00050 Cold shock protein signature 27 36 3.0E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 PRINTS PR00050 Cold shock protein signature 7 22 3.0E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 PRINTS PR00050 Cold shock protein signature 42 60 3.0E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 PIRSF PIRSF002599 1 69 3.0E-24 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 R615_12415 718e86759d07a9c5d98f07a2904492fc 69 Gene3D G3DSA:2.40.50.140 4 67 4.3E-29 T 12-10-2018 R615_01075 27efb026cd192ff6ba089e2210db3d1f 209 SUPERFAMILY SSF55718 28 123 3.14E-5 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily R615_01075 27efb026cd192ff6ba089e2210db3d1f 209 Pfam PF02036 SCP-2 sterol transfer family 18 115 2.4E-7 T 12-10-2018 IPR003033 SCP2 sterol-binding domain R615_15030 c0189ec4e66131e5c23c63514debdec5 217 Gene3D G3DSA:3.40.50.10610 27 191 3.5E-60 T 12-10-2018 R615_15030 c0189ec4e66131e5c23c63514debdec5 217 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 13 209 3.0E-77 T 12-10-2018 IPR008517 Protein of unknown function DUF799 R615_07485 375f380de8ec393d414bd4de56333824 253 Pfam PF04654 Protein of unknown function, DUF599 18 227 7.4E-54 T 12-10-2018 IPR006747 Protein of unknown function DUF599 R615_13530 f77a2ce5cd35abc81501e98fa71e0e76 297 Gene3D G3DSA:1.10.10.60 187 295 2.3E-24 T 12-10-2018 R615_13530 f77a2ce5cd35abc81501e98fa71e0e76 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_13530 f77a2ce5cd35abc81501e98fa71e0e76 297 SMART SM00342 207 289 4.9E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_13530 f77a2ce5cd35abc81501e98fa71e0e76 297 Pfam PF12833 Helix-turn-helix domain 213 290 8.7E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_13530 f77a2ce5cd35abc81501e98fa71e0e76 297 SUPERFAMILY SSF46689 242 291 5.38E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_13640 b571bccd2f9d721b4b0219fa620e5ec0 211 SUPERFAMILY SSF51206 5 125 2.36E-18 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_13640 b571bccd2f9d721b4b0219fa620e5ec0 211 Pfam PF00027 Cyclic nucleotide-binding domain 49 124 2.4E-11 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_13640 b571bccd2f9d721b4b0219fa620e5ec0 211 Gene3D G3DSA:2.60.120.10 1 155 1.8E-16 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_13640 b571bccd2f9d721b4b0219fa620e5ec0 211 SMART SM00100 23 142 2.4E-4 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_07040 72b40aa7f0dc6e3992f1e97aa34dd826 250 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 2 246 1.4E-60 T 12-10-2018 IPR026387 Outer membrane protein R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 Gene3D G3DSA:3.30.1490.20 115 180 3.3E-70 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 Pfam PF01820 D-ala D-ala ligase N-terminus 8 90 1.6E-19 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 Pfam PF07478 D-ala D-ala ligase C-terminus 110 300 1.7E-55 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 8 302 5.4E-99 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 67 78 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 245 273 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 7 303 33.813 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 Gene3D G3DSA:3.40.50.20 1 88 1.1E-29 T 12-10-2018 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 SUPERFAMILY SSF56059 100 305 6.7E-52 T 12-10-2018 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 SUPERFAMILY SSF52440 8 100 4.41E-30 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 PIRSF PIRSF039102 48 307 3.9E-85 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 PIRSF PIRSF039102 5 56 2.2E-8 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 R615_13390 2d5130e04bf12d50aa1a28255d5a6601 308 Gene3D G3DSA:3.30.470.20 89 299 3.3E-70 T 12-10-2018 R615_13065 130683f563caf3a7e137baa2f6111430 124 Pfam PF05717 IS66 Orf2 like protein 15 112 3.3E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_06535 130683f563caf3a7e137baa2f6111430 124 Pfam PF05717 IS66 Orf2 like protein 15 112 3.3E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_12250 9fd858078adc2f7f4ca2786144945505 484 Gene3D G3DSA:3.50.50.60 311 484 1.3E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_12250 9fd858078adc2f7f4ca2786144945505 484 Pfam PF00743 Flavin-binding monooxygenase-like 8 338 5.3E-21 T 12-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 R615_12250 9fd858078adc2f7f4ca2786144945505 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 4.5E-8 T 12-10-2018 R615_12250 9fd858078adc2f7f4ca2786144945505 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.5E-8 T 12-10-2018 R615_12250 9fd858078adc2f7f4ca2786144945505 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 130 139 4.5E-8 T 12-10-2018 R615_12250 9fd858078adc2f7f4ca2786144945505 484 SUPERFAMILY SSF51905 2 249 6.6E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_12250 9fd858078adc2f7f4ca2786144945505 484 Gene3D G3DSA:3.50.50.60 1 165 2.6E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_12250 9fd858078adc2f7f4ca2786144945505 484 SUPERFAMILY SSF51905 260 481 4.4E-23 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03145 6c89116710a8d56beff3c94154ff6f64 312 Gene3D G3DSA:3.30.70.270 157 290 8.9E-12 T 12-10-2018 R615_03145 6c89116710a8d56beff3c94154ff6f64 312 SMART SM00267 158 312 0.0031 T 12-10-2018 IPR000160 GGDEF domain R615_03145 6c89116710a8d56beff3c94154ff6f64 312 SUPERFAMILY SSF55073 175 274 7.38E-9 T 12-10-2018 IPR029787 Nucleotide cyclase R615_03145 6c89116710a8d56beff3c94154ff6f64 312 Pfam PF00990 Diguanylate cyclase, GGDEF domain 170 267 5.0E-10 T 12-10-2018 IPR000160 GGDEF domain R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00387 1689 1830 1.2E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 432 541 5.1E-9 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF52172 1997 2115 9.82E-39 T 12-10-2018 IPR011006 CheY-like superfamily R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00260 1822 1967 1.9E-24 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF00072 Response regulator receiver domain 1999 2110 2.7E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF01627 Hpt domain 1168 1261 1.6E-15 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF01627 Hpt domain 668 757 3.0E-14 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF01627 Hpt domain 14 102 4.5E-8 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF01627 Hpt domain 834 919 5.9E-11 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF01627 Hpt domain 1317 1386 4.4E-12 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 831 929 1.01E-17 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 971 1086 2.24E-8 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF01584 CheW-like domain 1835 1969 2.2E-16 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00448 1997 2110 2.4E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:1.20.120.160 18 141 1.3E-5 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:2.40.50.180 1853 1922 2.2E-32 T 12-10-2018 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 1166 1284 6.93E-26 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1693 1829 2.1E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:3.30.565.10 1643 1829 1.0E-53 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:1.20.120.160 1315 1440 7.2E-21 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:1.20.120.160 833 969 2.7E-15 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 13 134 9.29E-20 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:3.40.50.12740 1997 2119 1.6E-40 T 12-10-2018 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM01231 1507 1644 4.7E-13 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:1.10.287.560 1507 1568 3.6E-5 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF50341 1829 1967 4.84E-21 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:1.20.120.160 1157 1291 3.4E-26 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:1.20.120.160 658 781 8.7E-24 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 1315 1418 3.79E-20 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF55874 1646 1827 2.75E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 1509 1644 1.7E-7 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SUPERFAMILY SSF47226 665 776 7.85E-25 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 Gene3D G3DSA:2.30.30.40 1830 1962 2.2E-32 T 12-10-2018 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00073 1165 1262 4.6E-10 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00073 1315 1416 1.3E-4 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00073 666 763 1.2E-7 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 SMART SM00073 831 928 0.0046 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1790 1808 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1814 1827 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01270 822a6e4df9dccfcd10b01357e607d076 2119 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1734 1748 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_14580 dd565972fa5eded409fb7f048cd84649 526 Gene3D G3DSA:3.50.50.60 1 176 6.4E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14580 dd565972fa5eded409fb7f048cd84649 526 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 15 228 1.1E-19 T 12-10-2018 R615_14580 dd565972fa5eded409fb7f048cd84649 526 SUPERFAMILY SSF51905 14 418 1.3E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14580 dd565972fa5eded409fb7f048cd84649 526 Gene3D G3DSA:3.50.50.60 314 499 5.2E-39 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 Gene3D G3DSA:3.40.50.2300 1 167 7.5E-59 T 12-10-2018 R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 SUPERFAMILY SSF52788 1 162 1.19E-46 T 12-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 3.9E-18 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 3.9E-18 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 3.9E-18 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 SMART SM00226 2 161 1.2E-51 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I R615_08250 7a85e03c883b538aee2ea8aa1e6f9ebc 167 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 158 8.6E-40 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I R615_14130 675e941738f175c66ff536e0081e992d 392 Gene3D G3DSA:1.20.1250.20 3 381 1.4E-28 T 12-10-2018 R615_14130 675e941738f175c66ff536e0081e992d 392 Pfam PF07690 Major Facilitator Superfamily 242 379 1.9E-9 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_14130 675e941738f175c66ff536e0081e992d 392 Pfam PF07690 Major Facilitator Superfamily 17 239 8.2E-10 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_14130 675e941738f175c66ff536e0081e992d 392 SUPERFAMILY SSF103473 7 382 1.57E-32 T 12-10-2018 IPR036259 MFS transporter superfamily R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 479 29.817 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 19 474 1.5E-138 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 SUPERFAMILY SSF53244 329 474 3.53E-37 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Gene3D G3DSA:3.40.1190.10 100 332 1.4E-78 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 106 129 - T 12-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Gene3D G3DSA:3.90.190.20 333 480 9.0E-45 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 SUPERFAMILY SSF63418 3 95 3.27E-16 T 12-10-2018 IPR035911 MurE/MurF, N-terminal R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Pfam PF08245 Mur ligase middle domain 108 308 5.4E-51 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Gene3D G3DSA:3.40.1390.10 2 98 2.3E-16 T 12-10-2018 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 SUPERFAMILY SSF53623 102 326 6.67E-73 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 412 3.0E-19 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 R615_13425 f34598851dac1f07874c6740d0bab3fa 489 Pfam PF01225 Mur ligase family, catalytic domain 20 86 6.0E-8 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 R615_12565 fafb5c5d4b9a31128d5a4b02bbdc53e9 213 Hamap MF_01389 Urease accessory protein UreG [ureG]. 4 202 47.551 T 12-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 R615_12565 fafb5c5d4b9a31128d5a4b02bbdc53e9 213 SUPERFAMILY SSF52540 3 197 1.76E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12565 fafb5c5d4b9a31128d5a4b02bbdc53e9 213 PIRSF PIRSF005624 1 211 6.6E-50 T 12-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 R615_12565 fafb5c5d4b9a31128d5a4b02bbdc53e9 213 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 6 199 3.5E-107 T 12-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 R615_12565 fafb5c5d4b9a31128d5a4b02bbdc53e9 213 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 178 6.2E-40 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain R615_12565 fafb5c5d4b9a31128d5a4b02bbdc53e9 213 Gene3D G3DSA:3.40.50.300 5 202 6.6E-51 T 12-10-2018 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 SUPERFAMILY SSF52374 5 666 1.86E-145 T 12-10-2018 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Gene3D G3DSA:3.10.20.590 798 859 1.4E-24 T 12-10-2018 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Pfam PF08264 Anticodon-binding domain of tRNA 699 817 9.8E-17 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 SUPERFAMILY SSF50677 226 415 3.98E-52 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Gene3D G3DSA:1.10.730.10 8 790 0.0 T 12-10-2018 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 SUPERFAMILY SSF47323 664 858 1.66E-34 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 858 23.026 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 572 3.6E-8 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 171 5.3E-27 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Gene3D G3DSA:3.10.330.110 567 629 0.0 T 12-10-2018 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 858 0.0 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 8.9E-53 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Pfam PF09334 tRNA synthetases class I (M) 620 663 1.3E-4 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_14010 37a91139bba2e7d1e2ef3ca825fa6781 859 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 5.1E-75 T 12-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 6 417 40.99 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 Gene3D G3DSA:3.40.309.10 227 375 4.5E-161 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 Pfam PF00171 Aldehyde dehydrogenase family 12 287 3.7E-16 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 Pfam PF00171 Aldehyde dehydrogenase family 309 374 3.0E-6 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 SUPERFAMILY SSF53720 6 417 2.62E-118 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 324 346 - T 12-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 14 407 2.2E-149 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 Gene3D G3DSA:3.40.605.10 19 412 4.5E-161 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_03140 05fdabcbd6d64c8761394d40e87268be 418 PIRSF PIRSF000151 1 418 1.8E-175 T 12-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 R615_06275 db663d80716de81ccf359b7188b0964c 164 SMART SM00738 4 103 1.0E-14 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_06275 db663d80716de81ccf359b7188b0964c 164 SUPERFAMILY SSF82679 5 103 1.31E-23 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_06275 db663d80716de81ccf359b7188b0964c 164 Pfam PF02357 Transcription termination factor nusG 6 97 8.8E-17 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_06275 db663d80716de81ccf359b7188b0964c 164 Gene3D G3DSA:3.30.70.940 5 162 1.6E-41 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_14935 616b1f7c3a05b0270722f50fde995acc 319 SUPERFAMILY SSF53850 100 306 1.09E-44 T 12-10-2018 R615_14935 616b1f7c3a05b0270722f50fde995acc 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 8.3E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_14935 616b1f7c3a05b0270722f50fde995acc 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 9.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_14935 616b1f7c3a05b0270722f50fde995acc 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 9.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_14935 616b1f7c3a05b0270722f50fde995acc 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 9.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_14935 616b1f7c3a05b0270722f50fde995acc 319 SUPERFAMILY SSF46785 11 90 4.08E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_14935 616b1f7c3a05b0270722f50fde995acc 319 Pfam PF03466 LysR substrate binding domain 99 302 2.1E-48 T 12-10-2018 IPR005119 LysR, substrate-binding R615_14935 616b1f7c3a05b0270722f50fde995acc 319 Gene3D G3DSA:1.10.10.10 12 100 3.3E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14935 616b1f7c3a05b0270722f50fde995acc 319 Gene3D G3DSA:3.40.190.290 102 309 3.6E-35 T 12-10-2018 R615_01300 4322aefa75e5e2e94272b7e3f66fb273 552 Pfam PF00884 Sulfatase 216 487 1.7E-36 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 R615_01300 4322aefa75e5e2e94272b7e3f66fb273 552 Pfam PF08019 Domain of unknown function (DUF1705) 49 159 2.8E-6 T 12-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 R615_01300 4322aefa75e5e2e94272b7e3f66fb273 552 Gene3D G3DSA:3.40.720.10 200 536 3.7E-65 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 R615_01300 4322aefa75e5e2e94272b7e3f66fb273 552 SUPERFAMILY SSF53649 218 472 6.76E-19 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 R615_06420 0271af9cb78e520135227eadc845d1b3 678 Pfam PF02151 UvrB/uvrC motif 640 673 1.8E-8 T 12-10-2018 IPR001943 UVR domain GO:0005515 R615_06420 0271af9cb78e520135227eadc845d1b3 678 Pfam PF00271 Helicase conserved C-terminal domain 435 543 3.2E-20 T 12-10-2018 IPR001650 Helicase, C-terminal R615_06420 0271af9cb78e520135227eadc845d1b3 678 Gene3D G3DSA:4.10.860.10 626 678 3.9E-10 T 12-10-2018 R615_06420 0271af9cb78e520135227eadc845d1b3 678 SUPERFAMILY SSF52540 3 414 6.6E-137 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06420 0271af9cb78e520135227eadc845d1b3 678 Gene3D G3DSA:3.40.50.300 268 413 2.2E-52 T 12-10-2018 R615_06420 0271af9cb78e520135227eadc845d1b3 678 Gene3D G3DSA:3.40.50.300 1 241 9.1E-76 T 12-10-2018 R615_06420 0271af9cb78e520135227eadc845d1b3 678 Pfam PF04851 Type III restriction enzyme, res subunit 17 97 5.4E-8 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 R615_06420 0271af9cb78e520135227eadc845d1b3 678 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 673 43.509 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 R615_06420 0271af9cb78e520135227eadc845d1b3 678 Pfam PF12344 Ultra-violet resistance protein B 551 592 1.4E-22 T 12-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain R615_06420 0271af9cb78e520135227eadc845d1b3 678 SMART SM00487 9 437 6.8E-26 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_06420 0271af9cb78e520135227eadc845d1b3 678 Gene3D G3DSA:3.40.50.300 414 595 6.7E-52 T 12-10-2018 R615_06420 0271af9cb78e520135227eadc845d1b3 678 SUPERFAMILY SSF46600 627 674 3.79E-10 T 12-10-2018 IPR036876 UVR domain superfamily R615_06420 0271af9cb78e520135227eadc845d1b3 678 SMART SM00490 459 545 1.8E-20 T 12-10-2018 IPR001650 Helicase, C-terminal R615_06420 0271af9cb78e520135227eadc845d1b3 678 SUPERFAMILY SSF52540 37 583 7.29E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06420 0271af9cb78e520135227eadc845d1b3 678 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 670 0.0 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 R615_07285 3b8389c300098603a8bdffa66a6fe4e8 220 PIRSF PIRSF006102 1 209 3.1E-65 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_07285 3b8389c300098603a8bdffa66a6fe4e8 220 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 3 203 6.7E-99 T 12-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 R615_07285 3b8389c300098603a8bdffa66a6fe4e8 220 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 192 8.9E-59 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_07285 3b8389c300098603a8bdffa66a6fe4e8 220 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 1 204 34.861 T 12-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 PIRSF PIRSF000303 27 201 1.4E-43 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 Gene3D G3DSA:3.40.30.10 42 201 3.2E-36 T 12-10-2018 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 PRINTS PR01011 Glutathione peroxidase family signature 106 122 6.5E-6 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 PRINTS PR01011 Glutathione peroxidase family signature 71 88 6.5E-6 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 PRINTS PR01011 Glutathione peroxidase family signature 165 174 6.5E-6 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 ProSitePatterns PS00460 Glutathione peroxidases active site. 73 88 - T 12-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 SUPERFAMILY SSF52833 52 199 1.46E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_05990 c4a2c3e2b538017203fffb186aeb4e41 201 Pfam PF00255 Glutathione peroxidase 63 156 1.1E-20 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 70 78 - T 12-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 SUPERFAMILY SSF53681 5 104 9.81E-29 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 180 190 - T 12-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 Gene3D G3DSA:3.40.50.1860 7 229 2.6E-76 T 12-10-2018 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 SUPERFAMILY SSF53681 109 242 1.02E-27 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 213 5.0E-21 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 Gene3D G3DSA:3.40.50.1860 95 206 2.6E-76 T 12-10-2018 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 Hamap MF_00258 Glutamate racemase [murI]. 3 268 29.467 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_07580 d82a3f46c07c50680c8988fb9edeef4c 268 TIGRFAM TIGR00067 glut_race: glutamate racemase 5 227 4.4E-56 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:2.20.70.80 415 455 1.6E-18 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:3.30.470.90 92 341 1.8E-99 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 619 688 8.2E-11 T 12-10-2018 IPR001357 BRCT domain R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:1.10.287.610 26 91 3.8E-29 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Pfam PF14520 Helix-hairpin-helix domain 470 525 2.2E-7 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SMART SM00532 26 472 1.6E-269 T 12-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:1.10.150.20 456 529 1.2E-28 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 355 370 - T 12-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 34 686 1.2E-261 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SMART SM00292 617 694 6.5E-8 T 12-10-2018 IPR001357 BRCT domain R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:1.10.150.20 530 610 1.3E-28 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Hamap MF_01588 DNA ligase [ligA]. 25 691 53.223 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Pfam PF12826 Helix-hairpin-helix motif 534 597 6.3E-22 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SUPERFAMILY SSF52113 616 692 1.1E-16 T 12-10-2018 IPR036420 BRCT domain superfamily R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 431 458 1.2E-9 T 12-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:2.40.50.140 342 414 5.5E-34 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SUPERFAMILY SSF47781 428 608 2.22E-61 T 12-10-2018 IPR010994 RuvA domain 2-like R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SUPERFAMILY SSF50249 343 423 5.48E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 PIRSF PIRSF001604 19 695 6.6E-254 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 346 422 2.3E-35 T 12-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SUPERFAMILY SSF56091 27 340 1.75E-120 T 12-10-2018 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 138 167 - T 12-10-2018 IPR018239 NAD-dependent DNA ligase, active site R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Gene3D G3DSA:3.40.50.10190 615 699 1.0E-24 T 12-10-2018 IPR036420 BRCT domain superfamily R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 29 341 9.2E-132 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SMART SM00278 504 523 12.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SMART SM00278 568 587 460.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SMART SM00278 536 555 310.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_11525 0ed0f18a899024d5810b6aea2d64671d 701 SMART SM00278 470 489 48.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 208 222 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 Gene3D G3DSA:3.40.190.80 140 271 1.0E-30 T 12-10-2018 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 Pfam PF00459 Inositol monophosphatase family 5 227 1.8E-57 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 SUPERFAMILY SSF56655 5 231 4.32E-71 T 12-10-2018 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 Gene3D G3DSA:3.30.540.10 1 138 1.9E-42 T 12-10-2018 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 7.6E-42 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 7.6E-42 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 7.6E-42 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 175 196 7.6E-42 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 129 152 7.6E-42 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_15710 75a33429056ec39884f4f477ba4cb0e7 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 205 229 7.6E-42 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 SUPERFAMILY SSF81624 2 138 1.14E-39 T 12-10-2018 IPR035937 MutM-like, N-terminal R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 41.573 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 1.0E-22 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 6.4E-89 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 SUPERFAMILY SSF57716 217 268 1.57E-15 T 12-10-2018 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 113 4.1E-29 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 Gene3D G3DSA:1.10.8.50 139 269 1.6E-41 T 12-10-2018 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 SMART SM01232 129 221 5.7E-45 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 SMART SM00898 2 115 1.0E-50 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 268 5.0E-8 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 Gene3D G3DSA:3.20.190.10 2 128 1.8E-37 T 12-10-2018 IPR035937 MutM-like, N-terminal R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 12-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 R615_00960 2f5b0651532943a2fafb54a46ec58ac2 269 SUPERFAMILY SSF46946 130 221 5.59E-28 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 R615_11890 eeb597f706a3f28c452968c24ed64058 363 Gene3D G3DSA:3.40.50.1820 23 318 4.9E-67 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11890 eeb597f706a3f28c452968c24ed64058 363 SUPERFAMILY SSF53474 19 314 4.53E-62 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11890 eeb597f706a3f28c452968c24ed64058 363 Pfam PF00561 alpha/beta hydrolase fold 46 297 2.1E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_06160 1f7ea6d589cf8a2054ce83da375fb4b1 278 SUPERFAMILY SSF89550 5 277 8.83E-48 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 R615_06160 1f7ea6d589cf8a2054ce83da375fb4b1 278 Gene3D G3DSA:1.10.150.650 98 170 5.4E-79 T 12-10-2018 R615_06160 1f7ea6d589cf8a2054ce83da375fb4b1 278 SMART SM00481 5 70 5.8E-18 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal R615_06160 1f7ea6d589cf8a2054ce83da375fb4b1 278 Pfam PF02811 PHP domain 6 112 4.5E-10 T 12-10-2018 IPR004013 PHP domain GO:0003824 R615_06160 1f7ea6d589cf8a2054ce83da375fb4b1 278 Gene3D G3DSA:3.20.20.140 5 251 5.4E-79 T 12-10-2018 R615_04745 22c86411e40150c292e3a4cc1e03df41 149 Pfam PF00460 Flagella basal body rod protein 7 31 3.3E-8 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 R615_04745 22c86411e40150c292e3a4cc1e03df41 149 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site R615_04745 22c86411e40150c292e3a4cc1e03df41 149 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 102 147 1.1E-13 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain R615_04745 22c86411e40150c292e3a4cc1e03df41 149 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 149 2.3E-48 T 12-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 R615_06795 39c01067ae75242d02611cf87c85731c 227 SUPERFAMILY SSF52833 3 103 2.56E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_06795 39c01067ae75242d02611cf87c85731c 227 SUPERFAMILY SSF47616 76 225 1.54E-13 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_06795 39c01067ae75242d02611cf87c85731c 227 Gene3D G3DSA:1.20.1050.10 92 225 7.8E-21 T 12-10-2018 R615_06795 39c01067ae75242d02611cf87c85731c 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 78 1.8E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_06795 39c01067ae75242d02611cf87c85731c 227 Pfam PF00043 Glutathione S-transferase, C-terminal domain 170 224 2.1E-5 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal R615_06795 39c01067ae75242d02611cf87c85731c 227 Gene3D G3DSA:3.40.30.10 4 91 4.1E-14 T 12-10-2018 R615_14745 e81798c2b45593e080186e3188d17f1f 420 Gene3D G3DSA:3.40.640.10 37 289 3.5E-187 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_14745 e81798c2b45593e080186e3188d17f1f 420 Pfam PF00464 Serine hydroxymethyltransferase 9 386 7.2E-183 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 R615_14745 e81798c2b45593e080186e3188d17f1f 420 PIRSF PIRSF000412 1 420 5.2E-170 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 R615_14745 e81798c2b45593e080186e3188d17f1f 420 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 420 52.997 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 R615_14745 e81798c2b45593e080186e3188d17f1f 420 SUPERFAMILY SSF53383 6 419 4.29E-184 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_14745 e81798c2b45593e080186e3188d17f1f 420 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 12-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 R615_14745 e81798c2b45593e080186e3188d17f1f 420 Gene3D G3DSA:3.90.1150.10 10 396 3.5E-187 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 Gene3D G3DSA:3.20.19.10 682 921 3.6E-104 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 SUPERFAMILY SSF53732 13 655 6.93E-223 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 Pfam PF00330 Aconitase family (aconitate hydratase) 83 591 7.0E-182 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 Pfam PF00694 Aconitase C-terminal domain 720 847 3.6E-47 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 ProSitePatterns PS00450 Aconitase family signature 1. 456 472 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 26 920 0.0 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 ProSitePatterns PS01244 Aconitase family signature 2. 522 535 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 Gene3D G3DSA:1.10.1440.20 620 679 4.6E-17 T 12-10-2018 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 Gene3D G3DSA:3.30.499.10 381 619 1.6E-102 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 Gene3D G3DSA:3.30.499.20 14 380 1.1E-158 T 12-10-2018 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 SUPERFAMILY SSF52016 659 920 6.28E-87 T 12-10-2018 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 287 300 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 460 471 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 301 314 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 154 167 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 522 535 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 178 186 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 380 394 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 211 224 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_09045 27d0839eff4acd05e862cf427dfa5a08 923 PRINTS PR00415 Aconitase family signature 225 240 1.0E-42 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 R615_10205 254a929c1cc5cdbf53fe6d676e3484ea 461 SUPERFAMILY SSF53850 40 342 1.96E-20 T 12-10-2018 R615_10205 254a929c1cc5cdbf53fe6d676e3484ea 461 Pfam PF13379 NMT1-like family 35 315 1.9E-107 T 12-10-2018 R615_10205 254a929c1cc5cdbf53fe6d676e3484ea 461 Gene3D G3DSA:3.40.190.10 41 439 1.1E-142 T 12-10-2018 R615_10205 254a929c1cc5cdbf53fe6d676e3484ea 461 Gene3D G3DSA:3.40.190.10 126 444 1.1E-142 T 12-10-2018 R615_10340 9987b733034a0bcd22a953dbfbf3b005 203 SUPERFAMILY SSF53955 77 196 4.38E-33 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_10340 9987b733034a0bcd22a953dbfbf3b005 203 Gene3D G3DSA:1.10.530.10 85 201 1.1E-25 T 12-10-2018 R615_10340 9987b733034a0bcd22a953dbfbf3b005 203 Pfam PF01464 Transglycosylase SLT domain 90 186 6.1E-19 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 R615_09465 9eaa4096f8f7f5b2600ada096cd2da28 58 SUPERFAMILY SSF46955 5 54 5.01E-7 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_09465 9eaa4096f8f7f5b2600ada096cd2da28 58 Gene3D G3DSA:1.10.1660.10 4 58 7.8E-8 T 12-10-2018 R615_09465 9eaa4096f8f7f5b2600ada096cd2da28 58 Pfam PF12728 Helix-turn-helix domain 5 51 6.4E-9 T 12-10-2018 R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 1.9E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.9E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.9E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.9E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.9E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 SUPERFAMILY SSF51735 9 241 3.33E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 Gene3D G3DSA:3.40.50.720 1 246 2.1E-61 T 12-10-2018 R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 Pfam PF00106 short chain dehydrogenase 13 209 3.2E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_06200 16140de7d4d09e8a2e8122ec1d45a4c1 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_01935 e847b476815b0e305b2aee8495ebe8bd 191 Pfam PF11655 Protein of unknown function (DUF2589) 12 182 1.2E-28 T 12-10-2018 IPR024510 Protein of unknown function DUF2589 R615_01935 e847b476815b0e305b2aee8495ebe8bd 191 ProDom PD104924 XAC1607 AF0417 6 184 4.0E-19 T 12-10-2018 R615_17430 71f98cccdc34c2d88bcee49eb8f63fbf 460 PIRSF PIRSF028135 1 459 1.7E-111 T 12-10-2018 IPR016869 Uncharacterised conserved protein UCP028135, HipA-like R615_17430 71f98cccdc34c2d88bcee49eb8f63fbf 460 Pfam PF07804 HipA-like C-terminal domain 159 403 4.0E-30 T 12-10-2018 IPR012893 HipA-like, C-terminal R615_04280 e032115dc7cc511fd119ee11de9ea927 302 SUPERFAMILY SSF46894 231 294 4.76E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 Pfam PF00196 Bacterial regulatory proteins, luxR family 241 293 2.9E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 Pfam PF00072 Response regulator receiver domain 10 121 3.8E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 SMART SM00448 8 121 2.6E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 SMART SM00421 238 295 2.6E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 271 283 5.6E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 241 255 5.6E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 255 271 5.6E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 Gene3D G3DSA:3.40.50.12740 8 184 1.3E-40 T 12-10-2018 R615_04280 e032115dc7cc511fd119ee11de9ea927 302 SUPERFAMILY SSF52172 7 138 2.99E-38 T 12-10-2018 IPR011006 CheY-like superfamily R615_04280 e032115dc7cc511fd119ee11de9ea927 302 Gene3D G3DSA:1.10.10.10 235 300 1.1E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16045 09ae43e8ff5ef5929f21aeaf3500e512 425 PIRSF PIRSF006066 1 425 1.1E-101 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 R615_16045 09ae43e8ff5ef5929f21aeaf3500e512 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 420 6.0E-80 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit R615_16045 09ae43e8ff5ef5929f21aeaf3500e512 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 424 1.2E-105 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 R615_11500 7006f5689608500409d7808f001b855d 76 Gene3D G3DSA:3.40.30.10 1 76 5.9E-24 T 12-10-2018 R615_11500 7006f5689608500409d7808f001b855d 76 SUPERFAMILY SSF52833 1 76 5.17E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11500 7006f5689608500409d7808f001b855d 76 PIRSF PIRSF037031 1 76 9.6E-27 T 12-10-2018 IPR005243 Redox-active disulphide protein 2 R615_11500 7006f5689608500409d7808f001b855d 76 Pfam PF13192 Thioredoxin domain 3 76 1.1E-22 T 12-10-2018 IPR012336 Thioredoxin-like fold R615_00310 a3b82af3c711c5ebe942aa2fdff5635e 321 Pfam PF02254 TrkA-N domain 116 217 2.1E-5 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 R615_00310 a3b82af3c711c5ebe942aa2fdff5635e 321 Pfam PF07885 Ion channel 18 85 2.2E-10 T 12-10-2018 IPR013099 Potassium channel domain R615_00310 a3b82af3c711c5ebe942aa2fdff5635e 321 Gene3D G3DSA:3.40.50.720 94 218 2.6E-15 T 12-10-2018 R615_00310 a3b82af3c711c5ebe942aa2fdff5635e 321 SUPERFAMILY SSF51735 103 218 1.38E-10 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00310 a3b82af3c711c5ebe942aa2fdff5635e 321 SUPERFAMILY SSF81324 6 111 2.09E-18 T 12-10-2018 R615_00310 a3b82af3c711c5ebe942aa2fdff5635e 321 Gene3D G3DSA:1.10.287.70 2 87 5.1E-15 T 12-10-2018 R615_11585 bbf68102c5e884e9ee66e1a65b9ae769 184 Pfam PF03358 NADPH-dependent FMN reductase 36 113 2.0E-10 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 R615_11585 bbf68102c5e884e9ee66e1a65b9ae769 184 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 12-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 R615_11585 bbf68102c5e884e9ee66e1a65b9ae769 184 SUPERFAMILY SSF52218 1 182 6.42E-45 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_11585 bbf68102c5e884e9ee66e1a65b9ae769 184 Gene3D G3DSA:3.40.50.360 1 183 8.6E-57 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_08005 938fa29a2ee90d2aa1235e9aab24d00a 156 SMART SM00347 32 137 9.2E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_08005 938fa29a2ee90d2aa1235e9aab24d00a 156 SUPERFAMILY SSF46785 5 148 1.73E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_08005 938fa29a2ee90d2aa1235e9aab24d00a 156 Pfam PF01047 MarR family 39 102 6.1E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_08005 938fa29a2ee90d2aa1235e9aab24d00a 156 Gene3D G3DSA:1.10.10.10 4 148 6.8E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_13220 e923abdd9a942df3e1fee84828f41788 425 SUPERFAMILY SSF51905 127 309 1.59E-6 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13220 e923abdd9a942df3e1fee84828f41788 425 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 307 2.8E-19 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_13220 e923abdd9a942df3e1fee84828f41788 425 SUPERFAMILY SSF51905 3 340 1.45E-27 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13220 e923abdd9a942df3e1fee84828f41788 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 3.3E-5 T 12-10-2018 R615_13220 e923abdd9a942df3e1fee84828f41788 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.3E-5 T 12-10-2018 R615_13220 e923abdd9a942df3e1fee84828f41788 425 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 281 303 3.3E-5 T 12-10-2018 R615_13220 e923abdd9a942df3e1fee84828f41788 425 Gene3D G3DSA:3.50.50.100 1 416 2.1E-155 T 12-10-2018 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 Gene3D G3DSA:1.10.10.10 12 111 1.8E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 SUPERFAMILY SSF46785 22 119 4.9E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 51 69 - T 12-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 Pfam PF01022 Bacterial regulatory protein, arsR family 34 79 1.4E-15 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 SMART SM00418 27 109 5.5E-27 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 77 92 2.3E-20 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 60 2.3E-20 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 2.3E-20 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_07465 e7e64042f3e80c8e1f79955dccd1d9d5 134 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 77 2.3E-20 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_14865 d415eb11a4767039fecffc49b393e41b 662 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 659 1.6E-303 T 12-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 R615_14865 d415eb11a4767039fecffc49b393e41b 662 Pfam PF02780 Transketolase, C-terminal domain 543 654 2.0E-11 T 12-10-2018 IPR033248 Transketolase, C-terminal domain R615_14865 d415eb11a4767039fecffc49b393e41b 662 ProSitePatterns PS00802 Transketolase signature 2. 468 484 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_14865 d415eb11a4767039fecffc49b393e41b 662 Gene3D G3DSA:3.40.50.970 2 326 4.7E-135 T 12-10-2018 R615_14865 d415eb11a4767039fecffc49b393e41b 662 SUPERFAMILY SSF52518 349 527 5.15E-65 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_14865 d415eb11a4767039fecffc49b393e41b 662 SUPERFAMILY SSF52518 5 329 2.14E-122 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_14865 d415eb11a4767039fecffc49b393e41b 662 Pfam PF02779 Transketolase, pyrimidine binding domain 355 526 2.7E-44 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain R615_14865 d415eb11a4767039fecffc49b393e41b 662 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_14865 d415eb11a4767039fecffc49b393e41b 662 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 1.7E-167 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 R615_14865 d415eb11a4767039fecffc49b393e41b 662 SMART SM00861 355 526 2.1E-63 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain R615_14865 d415eb11a4767039fecffc49b393e41b 662 Gene3D G3DSA:3.40.50.920 539 662 4.0E-40 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 R615_14865 d415eb11a4767039fecffc49b393e41b 662 Gene3D G3DSA:3.40.50.970 327 538 1.5E-79 T 12-10-2018 R615_14865 d415eb11a4767039fecffc49b393e41b 662 SUPERFAMILY SSF52922 534 662 1.83E-40 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 21 401 5.0E-141 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 SUPERFAMILY SSF53383 41 402 1.86E-120 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 Gene3D G3DSA:3.90.1150.10 270 404 3.6E-52 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 212 226 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 21 401 8.7E-175 T 12-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 22 402 54.175 T 12-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 PIRSF PIRSF001434 8 404 1.9E-132 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 R615_09805 ea0baa997bdd0590791dac03aa2f421a 404 Gene3D G3DSA:3.40.640.10 16 267 3.2E-86 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 2.8E-249 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 SUPERFAMILY SSF55261 291 421 6.54E-47 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Gene3D G3DSA:3.30.930.10 118 582 1.6E-204 T 12-10-2018 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 SUPERFAMILY SSF55681 116 585 1.14E-103 T 12-10-2018 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Gene3D G3DSA:3.30.1360.30 273 422 1.6E-204 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 192 204 2.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 2.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 2.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 209 222 2.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 2.9E-18 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 34.14 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 120 558 2.7E-111 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Pfam PF02938 GAD domain 309 408 5.8E-30 T 12-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 Gene3D G3DSA:2.40.50.140 1 106 2.2E-36 T 12-10-2018 R615_07880 4ba5f3fd8ee922886036d4e84790742a 592 SUPERFAMILY SSF50249 1 105 2.1E-35 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 Gene3D G3DSA:3.30.1330.60 177 295 1.9E-29 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 SUPERFAMILY SSF103088 159 289 4.97E-28 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 Pfam PF00691 OmpA family 188 283 1.3E-17 T 12-10-2018 IPR006665 OmpA-like domain R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 205 231 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 124 146 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 47 65 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 234 251 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 85 103 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 252 271 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 149 168 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 272 292 3.4E-19 T 12-10-2018 R615_05720 dc19f0daf2b2194dae9a7052f6d5cb03 314 Gene3D G3DSA:2.60.40.2540 27 176 2.6E-38 T 12-10-2018 R615_16590 0feddcfe5a8b678b1f441ab0f1b6a700 436 Gene3D G3DSA:1.20.1250.20 37 229 2.6E-6 T 12-10-2018 R615_16590 0feddcfe5a8b678b1f441ab0f1b6a700 436 Gene3D G3DSA:1.20.1250.20 257 434 1.6E-8 T 12-10-2018 R615_16590 0feddcfe5a8b678b1f441ab0f1b6a700 436 SUPERFAMILY SSF103473 37 432 1.83E-21 T 12-10-2018 IPR036259 MFS transporter superfamily R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 78 247 1.3E-47 T 12-10-2018 IPR012997 Rare lipoprotein A R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 Pfam PF05036 Sporulation related domain 178 245 2.0E-8 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 SUPERFAMILY SSF50685 69 168 1.29E-10 T 12-10-2018 IPR036908 RlpA-like domain superfamily R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 SUPERFAMILY SSF110997 176 250 3.92E-10 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 Gene3D G3DSA:2.40.40.10 75 169 2.0E-38 T 12-10-2018 IPR036908 RlpA-like domain superfamily R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 15 168 24.779 T 12-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 R615_03105 34b37f5fc86770f37d60cb0d5097d2de 256 Pfam PF03330 Lytic transglycolase 77 165 1.8E-26 T 12-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain R615_09895 a2f2c6aeb88e9f077721cc6518c1fe06 323 Gene3D G3DSA:3.40.718.10 22 317 2.5E-94 T 12-10-2018 R615_09895 a2f2c6aeb88e9f077721cc6518c1fe06 323 PIRSF PIRSF000428 10 318 1.8E-81 T 12-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 R615_09895 a2f2c6aeb88e9f077721cc6518c1fe06 323 SUPERFAMILY SSF53659 23 316 5.76E-61 T 12-10-2018 R615_09895 a2f2c6aeb88e9f077721cc6518c1fe06 323 Pfam PF01515 Phosphate acetyl/butaryl transferase 99 310 1.3E-45 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 R615_16115 dd83561a316ea7ebaf5ddc16a61fed07 101 SUPERFAMILY SSF57716 2 101 1.28E-35 T 12-10-2018 R615_16115 dd83561a316ea7ebaf5ddc16a61fed07 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 9.8E-24 T 12-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16115 dd83561a316ea7ebaf5ddc16a61fed07 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 12-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16115 dd83561a316ea7ebaf5ddc16a61fed07 101 Gene3D G3DSA:4.10.830.10 40 101 1.7E-22 T 12-10-2018 R615_16115 dd83561a316ea7ebaf5ddc16a61fed07 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.256 T 12-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 157 165 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 Pfam PF00271 Helicase conserved C-terminal domain 243 345 1.2E-28 T 12-10-2018 IPR001650 Helicase, C-terminal R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 Gene3D G3DSA:3.40.50.300 216 414 3.9E-47 T 12-10-2018 R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 Gene3D G3DSA:3.40.50.300 4 215 1.4E-71 T 12-10-2018 R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 SUPERFAMILY SSF52540 39 356 9.49E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 SMART SM00490 264 345 1.9E-30 T 12-10-2018 IPR001650 Helicase, C-terminal R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 Pfam PF00270 DEAD/DEAH box helicase 31 196 7.2E-47 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_05440 b27558a9868c3bb75c0eb6713ba07b26 459 SMART SM00487 26 227 4.9E-51 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_17250 4a89e30cb8ce640dc5b36c7d3a169156 1125 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 82 4.0E-26 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal R615_17250 4a89e30cb8ce640dc5b36c7d3a169156 1125 SMART SM00460 171 247 9.0E-19 T 12-10-2018 IPR002931 Transglutaminase-like R615_17250 4a89e30cb8ce640dc5b36c7d3a169156 1125 Pfam PF01841 Transglutaminase-like superfamily 129 245 2.1E-17 T 12-10-2018 IPR002931 Transglutaminase-like R615_17250 4a89e30cb8ce640dc5b36c7d3a169156 1125 Gene3D G3DSA:3.10.620.30 94 280 2.7E-27 T 12-10-2018 R615_17250 4a89e30cb8ce640dc5b36c7d3a169156 1125 SUPERFAMILY SSF54001 9 336 1.54E-70 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_17250 4a89e30cb8ce640dc5b36c7d3a169156 1125 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 275 1120 0.0 T 12-10-2018 IPR018667 Domain of unknown function DUF2126 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.139 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.4E-35 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.4E-35 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.4E-35 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 1.5E-38 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 Pfam PF01016 Ribosomal L27 protein 2 82 5.2E-37 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 12-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 SUPERFAMILY SSF110324 2 82 1.36E-32 T 12-10-2018 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 Gene3D G3DSA:2.40.50.100 20 86 5.0E-29 T 12-10-2018 R615_03255 b5db1eb961b11cb165cd9b9fcd455900 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 6.0E-13 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_12280 e0f6da16e284d5dc6ecc6caa666a3db7 392 Gene3D G3DSA:3.40.50.2300 59 333 6.1E-25 T 12-10-2018 R615_12280 e0f6da16e284d5dc6ecc6caa666a3db7 392 Pfam PF13433 Periplasmic binding protein domain 28 361 1.4E-22 T 12-10-2018 R615_12280 e0f6da16e284d5dc6ecc6caa666a3db7 392 SUPERFAMILY SSF53822 62 353 7.06E-17 T 12-10-2018 IPR028082 Periplasmic binding protein-like I R615_12280 e0f6da16e284d5dc6ecc6caa666a3db7 392 Gene3D G3DSA:3.40.50.2300 136 345 6.1E-25 T 12-10-2018 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 SUPERFAMILY SSF58104 461 770 4.45E-64 T 12-10-2018 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 Gene3D G3DSA:1.10.287.950 439 771 1.7E-65 T 12-10-2018 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 SMART SM00304 440 493 1.5E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 SMART SM00283 508 769 9.9E-63 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 Gene3D G3DSA:3.30.450.20 254 418 5.1E-6 T 12-10-2018 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 Pfam PF02743 Cache domain 37 397 8.7E-13 T 12-10-2018 IPR033479 Double Cache domain 1 R615_06020 b878680249d6f0188d9a1b17feb2e99a 772 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 568 736 2.6E-44 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_12790 2a2ea225aac287dd5099ddd16312c23a 147 PIRSF PIRSF004923 1 144 1.2E-31 T 12-10-2018 IPR026268 Protein RseC R615_12790 2a2ea225aac287dd5099ddd16312c23a 147 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 133 3.1E-30 T 12-10-2018 R615_15625 b4a86c517a518a5a820417cad88d3f58 148 SUPERFAMILY SSF47413 46 92 8.57E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_15625 b4a86c517a518a5a820417cad88d3f58 148 Gene3D G3DSA:1.10.260.40 4 108 8.2E-9 T 12-10-2018 R615_00175 434b72154d9f3629828f1fdbacbf9e02 302 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 1 301 39.743 T 12-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 R615_00175 434b72154d9f3629828f1fdbacbf9e02 302 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 3 289 8.9E-76 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 R615_00175 434b72154d9f3629828f1fdbacbf9e02 302 PIRSF PIRSF026649 1 298 2.8E-93 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 R615_00175 434b72154d9f3629828f1fdbacbf9e02 302 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3 296 1.6E-95 T 12-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 Pfam PF08220 DeoR-like helix-turn-helix domain 9 60 1.1E-16 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 2.3E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 2.3E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 SMART SM00420 9 61 8.1E-18 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 SMART SM01134 74 235 1.3E-50 T 12-10-2018 R615_00350 31b581c8522f3e065b3a865ca3437a29 266 SUPERFAMILY SSF46785 9 60 8.37E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_00350 31b581c8522f3e065b3a865ca3437a29 266 Gene3D G3DSA:1.10.10.10 3 57 2.5E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00350 31b581c8522f3e065b3a865ca3437a29 266 SUPERFAMILY SSF100950 77 235 1.26E-28 T 12-10-2018 IPR037171 NagB/RpiA transferase-like R615_00350 31b581c8522f3e065b3a865ca3437a29 266 Pfam PF00455 DeoR C terminal sensor domain 78 234 1.8E-39 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain R615_04400 112cf4ada21ce10b09e2120ad0d3709e 173 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 61 98 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 R615_04400 112cf4ada21ce10b09e2120ad0d3709e 173 SUPERFAMILY SSF53927 9 161 3.68E-52 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 R615_04400 112cf4ada21ce10b09e2120ad0d3709e 173 Pfam PF14437 MafB19-like deaminase 11 155 9.7E-31 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 R615_04400 112cf4ada21ce10b09e2120ad0d3709e 173 Gene3D G3DSA:3.40.140.10 9 170 6.8E-57 T 12-10-2018 R615_04400 112cf4ada21ce10b09e2120ad0d3709e 173 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 16 157 43.845 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 R615_09760 bdb147083203f671171507a295a31bd5 164 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 20 108 1.6E-9 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 R615_09760 bdb147083203f671171507a295a31bd5 164 Gene3D G3DSA:2.30.110.10 12 130 3.1E-16 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 R615_09760 bdb147083203f671171507a295a31bd5 164 SUPERFAMILY SSF50475 19 112 5.12E-14 T 12-10-2018 R615_14920 1dd724c7fa7ca832aaf39779081e0195 222 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 R615_14920 1dd724c7fa7ca832aaf39779081e0195 222 SUPERFAMILY SSF53056 2 216 5.76E-66 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 R615_14920 1dd724c7fa7ca832aaf39779081e0195 222 Pfam PF00484 Carbonic anhydrase 34 194 8.0E-51 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 R615_14920 1dd724c7fa7ca832aaf39779081e0195 222 Gene3D G3DSA:3.40.1050.10 1 207 7.1E-70 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 R615_14920 1dd724c7fa7ca832aaf39779081e0195 222 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 R615_14920 1dd724c7fa7ca832aaf39779081e0195 222 SMART SM00947 27 198 2.9E-64 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 R615_11975 faf2305703b4d0631a8d4790d90ba236 118 Pfam PF04341 Protein of unknown function, DUF485 14 101 1.0E-16 T 12-10-2018 IPR007436 Protein of unknown function DUF485 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 SMART SM01002 149 297 2.2E-77 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain R615_10155 4f75e49756893c1564f5e3632d299c2e 373 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 365 3.9E-146 T 12-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 PIRSF PIRSF000183 1 370 3.7E-142 T 12-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 2.6E-46 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal R615_10155 4f75e49756893c1564f5e3632d299c2e 373 SUPERFAMILY SSF52283 1 360 2.64E-64 T 12-10-2018 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 Gene3D G3DSA:3.40.50.720 3 352 6.1E-135 T 12-10-2018 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 12-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 Gene3D G3DSA:3.40.50.720 130 305 6.1E-135 T 12-10-2018 R615_10155 4f75e49756893c1564f5e3632d299c2e 373 SMART SM01003 4 137 2.6E-74 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal R615_10155 4f75e49756893c1564f5e3632d299c2e 373 SUPERFAMILY SSF51735 137 303 2.84E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_10155 4f75e49756893c1564f5e3632d299c2e 373 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 1.0E-76 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 Pfam PF02811 PHP domain 7 171 2.4E-39 T 12-10-2018 IPR004013 PHP domain GO:0003824 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 Gene3D G3DSA:3.20.20.140 1 268 1.4E-86 T 12-10-2018 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 SMART SM00481 6 73 5.0E-19 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 734 1.4E-169 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 SUPERFAMILY SSF89550 5 262 2.94E-15 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 Pfam PF14579 Helix-hairpin-helix motif 809 894 1.4E-25 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 SUPERFAMILY SSF160975 826 883 4.97E-5 T 12-10-2018 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 Gene3D G3DSA:1.10.10.1600 434 511 2.5E-25 T 12-10-2018 R615_13670 f2806bc56d35e1b85f44a94851730f8e 1162 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1034 0.0 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_03490 49aa6871ac1cccb3b6ad30e168a3a86f 469 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 56 397 3.8E-57 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 R615_03490 49aa6871ac1cccb3b6ad30e168a3a86f 469 SUPERFAMILY SSF51395 41 414 9.95E-108 T 12-10-2018 R615_03490 49aa6871ac1cccb3b6ad30e168a3a86f 469 Gene3D G3DSA:3.20.20.70 41 419 3.2E-119 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 11 579 5.4E-211 T 12-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 SUPERFAMILY SSF90123 12 324 3.4E-66 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 Pfam PF00005 ABC transporter 357 506 2.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 Pfam PF00664 ABC transporter transmembrane region 42 291 3.7E-43 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 SUPERFAMILY SSF52540 330 577 1.04E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 SMART SM00382 365 552 2.7E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 Gene3D G3DSA:3.40.50.300 326 578 2.6E-93 T 12-10-2018 R615_08235 7d1764ae4b45468af1a413d4ba0e493a 580 Gene3D G3DSA:1.20.1560.10 2 325 1.7E-69 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 R615_11055 0c4b563e3216a7e923269439497fcefd 536 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_11055 0c4b563e3216a7e923269439497fcefd 536 Pfam PF00009 Elongation factor Tu GTP binding domain 23 223 7.6E-46 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 PRINTS PR00315 GTP-binding elongation factor signature 160 169 1.8E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 PRINTS PR00315 GTP-binding elongation factor signature 87 95 1.8E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 PRINTS PR00315 GTP-binding elongation factor signature 26 39 1.8E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 PRINTS PR00315 GTP-binding elongation factor signature 123 134 1.8E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 PRINTS PR00315 GTP-binding elongation factor signature 107 117 1.8E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 SUPERFAMILY SSF50447 241 326 2.29E-24 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_11055 0c4b563e3216a7e923269439497fcefd 536 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 209 1.0E-14 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_11055 0c4b563e3216a7e923269439497fcefd 536 SUPERFAMILY SSF50465 329 431 3.84E-31 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal R615_11055 0c4b563e3216a7e923269439497fcefd 536 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 468 52.567 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_11055 0c4b563e3216a7e923269439497fcefd 536 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 430 1.6E-199 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_11055 0c4b563e3216a7e923269439497fcefd 536 Gene3D G3DSA:3.40.50.300 1 236 1.3E-77 T 12-10-2018 R615_11055 0c4b563e3216a7e923269439497fcefd 536 SUPERFAMILY SSF52540 16 232 3.43E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11055 0c4b563e3216a7e923269439497fcefd 536 Gene3D G3DSA:2.40.30.10 237 325 1.0E-27 T 12-10-2018 R615_11055 0c4b563e3216a7e923269439497fcefd 536 Gene3D G3DSA:2.40.30.10 327 432 8.0E-33 T 12-10-2018 R615_03560 e3b5a7b6296b40c9bce6700079d23c44 161 Gene3D G3DSA:3.30.70.990 9 97 2.0E-53 T 12-10-2018 IPR035570 UPF0234, N-terminal R615_03560 e3b5a7b6296b40c9bce6700079d23c44 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 3.3E-59 T 12-10-2018 IPR007551 Protein of unknown function DUF520 R615_03560 e3b5a7b6296b40c9bce6700079d23c44 161 Gene3D G3DSA:3.30.70.860 3 160 2.0E-53 T 12-10-2018 IPR035571 UPF0234-like, C-terminal R615_03560 e3b5a7b6296b40c9bce6700079d23c44 161 SUPERFAMILY SSF89963 2 84 1.78E-29 T 12-10-2018 IPR036183 YajQ-like superfamily R615_03560 e3b5a7b6296b40c9bce6700079d23c44 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 26.199 T 12-10-2018 IPR007551 Protein of unknown function DUF520 R615_03560 e3b5a7b6296b40c9bce6700079d23c44 161 SUPERFAMILY SSF89963 88 161 1.6E-23 T 12-10-2018 IPR036183 YajQ-like superfamily R615_11120 cc0b2d4e101a23ac56376cc8fa855f01 395 SUPERFAMILY SSF53850 18 210 2.53E-20 T 12-10-2018 R615_11120 cc0b2d4e101a23ac56376cc8fa855f01 395 Gene3D G3DSA:3.40.190.10 21 94 2.3E-13 T 12-10-2018 R615_11120 cc0b2d4e101a23ac56376cc8fa855f01 395 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 20 179 1.8E-9 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_11120 cc0b2d4e101a23ac56376cc8fa855f01 395 Gene3D G3DSA:3.40.190.10 95 181 2.3E-13 T 12-10-2018 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 SMART SM00387 232 347 1.3E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 Pfam PF00512 His Kinase A (phospho-acceptor) domain 126 182 1.3E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 SUPERFAMILY SSF55874 181 345 3.01E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 Gene3D G3DSA:3.30.565.10 189 347 2.2E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 SMART SM00388 124 188 9.6E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 235 345 2.5E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 Gene3D G3DSA:1.10.287.130 120 184 2.2E-14 T 12-10-2018 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 SUPERFAMILY SSF47384 126 186 9.81E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 273 287 6.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 344 6.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 325 6.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_06880 bd3fecc8dcea54a348789d8e186103ff 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 301 6.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 SMART SM00283 409 670 6.8E-93 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 43 144 3.7E-17 T 12-10-2018 IPR029095 NarX-like, N-terminal R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 SUPERFAMILY SSF58104 371 671 5.62E-65 T 12-10-2018 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 Gene3D G3DSA:1.10.287.950 346 672 9.2E-63 T 12-10-2018 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 8.9E-20 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 536 565 8.9E-20 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 507 534 8.9E-20 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 R615_01260 0997dae74b7297b3ac701f2e89060ea4 685 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 455 638 1.1E-41 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_06975 70679f846c907042d147885914a00959 426 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 12 422 4.2E-150 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 R615_06975 70679f846c907042d147885914a00959 426 SUPERFAMILY SSF52964 26 156 8.76E-36 T 12-10-2018 R615_06975 70679f846c907042d147885914a00959 426 SUPERFAMILY SSF69304 151 423 1.15E-56 T 12-10-2018 R615_06975 70679f846c907042d147885914a00959 426 Pfam PF07676 WD40-like Beta Propeller Repeat 231 266 1.9E-8 T 12-10-2018 IPR011659 WD40-like Beta Propeller R615_06975 70679f846c907042d147885914a00959 426 Pfam PF07676 WD40-like Beta Propeller Repeat 275 309 2.4E-9 T 12-10-2018 IPR011659 WD40-like Beta Propeller R615_06975 70679f846c907042d147885914a00959 426 Pfam PF07676 WD40-like Beta Propeller Repeat 189 221 1.8E-8 T 12-10-2018 IPR011659 WD40-like Beta Propeller R615_06975 70679f846c907042d147885914a00959 426 Gene3D G3DSA:2.120.10.30 160 426 5.9E-90 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_06975 70679f846c907042d147885914a00959 426 Gene3D G3DSA:3.40.50.10070 17 159 1.4E-42 T 12-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 R615_06975 70679f846c907042d147885914a00959 426 Pfam PF04052 TolB amino-terminal domain 22 121 7.0E-29 T 12-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 R615_06975 70679f846c907042d147885914a00959 426 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 2 421 44.266 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 Gene3D G3DSA:2.40.37.10 22 380 5.9E-93 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 SUPERFAMILY SSF51419 25 273 8.04E-63 T 12-10-2018 IPR029066 PLP-binding barrel R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 8.6E-18 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 8.6E-18 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 190 8.6E-18 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 261 280 8.6E-18 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 54 72 - T 12-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 271 3.5E-51 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01182 Ornithine decarboxylase signature 96 120 1.6E-17 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01182 Ornithine decarboxylase signature 126 148 1.6E-17 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01182 Ornithine decarboxylase signature 329 339 1.6E-17 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 PRINTS PR01182 Ornithine decarboxylase signature 52 79 1.6E-17 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 272 365 1.5E-15 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 12-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 Gene3D G3DSA:3.20.20.10 33 273 5.9E-93 T 12-10-2018 IPR029066 PLP-binding barrel R615_12950 2afa4b613dc8e3bae869c399d0c118ea 387 SUPERFAMILY SSF50621 246 387 3.98E-33 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 R615_12935 9bbb919aa067901b0b03df1f54192de0 347 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 208 1.1E-14 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_12935 9bbb919aa067901b0b03df1f54192de0 347 SMART SM00342 254 336 3.4E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12935 9bbb919aa067901b0b03df1f54192de0 347 Pfam PF12833 Helix-turn-helix domain 261 337 4.4E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_12935 9bbb919aa067901b0b03df1f54192de0 347 Gene3D G3DSA:1.10.10.60 233 347 2.4E-25 T 12-10-2018 R615_12935 9bbb919aa067901b0b03df1f54192de0 347 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 8.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_12935 9bbb919aa067901b0b03df1f54192de0 347 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 8.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_12935 9bbb919aa067901b0b03df1f54192de0 347 SUPERFAMILY SSF46689 289 341 1.39E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_11475 6aaed6ae91f9e9d99a7eec26f529d55f 312 SUPERFAMILY SSF53300 86 168 8.89E-6 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily R615_11475 6aaed6ae91f9e9d99a7eec26f529d55f 312 Pfam PF01882 Protein of unknown function DUF58 50 134 2.1E-24 T 12-10-2018 IPR002881 Domain of unknown function DUF58 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 SUPERFAMILY SSF53850 3 180 5.97E-54 T 12-10-2018 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 SUPERFAMILY SSF55021 185 273 3.62E-21 T 12-10-2018 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 Gene3D G3DSA:3.30.70.260 187 274 4.9E-22 T 12-10-2018 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 PIRSF PIRSF001500 1 275 3.5E-64 T 12-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 Gene3D G3DSA:3.40.190.10 87 166 2.3E-28 T 12-10-2018 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 Gene3D G3DSA:3.40.190.10 1 86 1.4E-22 T 12-10-2018 R615_07130 9737cbdb989c9cd63d16249892988ed1 282 Pfam PF00800 Prephenate dehydratase 4 180 1.0E-50 T 12-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 SMART SM00387 792 903 1.4E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 SUPERFAMILY SSF47384 665 746 3.14E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 SMART SM00448 925 1043 2.1E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 SMART SM00388 679 745 4.0E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Pfam PF00072 Response regulator receiver domain 927 1043 4.9E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Gene3D G3DSA:3.40.50.2300 919 1056 1.6E-27 T 12-10-2018 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Gene3D G3DSA:1.10.287.130 643 743 4.6E-23 T 12-10-2018 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Gene3D G3DSA:3.30.565.10 744 904 1.5E-47 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 SUPERFAMILY SSF55874 735 899 7.86E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Gene3D G3DSA:1.10.4160.10 18 485 1.5E-15 T 12-10-2018 IPR038271 Purine-cytosine permease superfamily R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 SUPERFAMILY SSF52172 924 1076 7.68E-29 T 12-10-2018 IPR011006 CheY-like superfamily R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 792 901 1.3E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 PRINTS PR00344 Bacterial sensor protein C-terminal signature 887 900 2.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 PRINTS PR00344 Bacterial sensor protein C-terminal signature 828 842 2.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 PRINTS PR00344 Bacterial sensor protein C-terminal signature 846 856 2.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 PRINTS PR00344 Bacterial sensor protein C-terminal signature 863 881 2.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_04275 64bea00dc07e248861a0c27d1bf3e434 1137 Pfam PF00512 His Kinase A (phospho-acceptor) domain 679 745 4.9E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_06230 352b094ebfed4d35d072a3b71d65915a 360 PIRSF PIRSF000525 1 360 1.2E-152 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 R615_06230 352b094ebfed4d35d072a3b71d65915a 360 Gene3D G3DSA:3.90.1150.10 257 360 2.6E-39 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_06230 352b094ebfed4d35d072a3b71d65915a 360 Pfam PF00266 Aminotransferase class-V 4 348 6.3E-58 T 12-10-2018 IPR000192 Aminotransferase class V domain R615_06230 352b094ebfed4d35d072a3b71d65915a 360 SUPERFAMILY SSF53383 1 358 8.14E-118 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_06230 352b094ebfed4d35d072a3b71d65915a 360 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 358 6.6E-156 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 R615_06230 352b094ebfed4d35d072a3b71d65915a 360 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 359 50.21 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 R615_06230 352b094ebfed4d35d072a3b71d65915a 360 Gene3D G3DSA:3.40.640.10 17 256 1.1E-91 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_10215 7ba106a7282d6c5b20a9e2f4e180a23f 283 Gene3D G3DSA:3.40.50.300 2 282 6.9E-62 T 12-10-2018 R615_10215 7ba106a7282d6c5b20a9e2f4e180a23f 283 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 24 254 2.2E-107 T 12-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 R615_10215 7ba106a7282d6c5b20a9e2f4e180a23f 283 SUPERFAMILY SSF52540 5 235 1.49E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10215 7ba106a7282d6c5b20a9e2f4e180a23f 283 Pfam PF00005 ABC transporter 24 166 5.9E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_10215 7ba106a7282d6c5b20a9e2f4e180a23f 283 SMART SM00382 33 216 3.0E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_10215 7ba106a7282d6c5b20a9e2f4e180a23f 283 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 344 353 0.15 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 325 334 0.15 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 306 315 0.15 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 247 258 0.026 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 210 220 0.059 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 193 202 0.15 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 361 370 0.39 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 268 277 0.15 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 227 238 0.031 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 Pfam PF02178 AT hook motif 287 296 0.15 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 359 371 10.0 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 191 203 7.4 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 304 316 7.4 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 210 222 0.66 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 285 297 7.4 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 227 239 0.33 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 266 278 7.4 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 342 354 7.4 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 247 259 0.35 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 SMART SM00384 323 335 7.4 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 PRINTS PR00929 AT-hook-like domain signature 225 236 3.6E-6 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 PRINTS PR00929 AT-hook-like domain signature 210 220 3.6E-6 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_12710 632540b377eae6784b179d4d19ff13e4 401 PRINTS PR00929 AT-hook-like domain signature 245 255 3.6E-6 T 12-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 R615_08395 9dd09dec873e675cdec56915f8c01501 264 Gene3D G3DSA:3.40.50.150 10 187 2.9E-14 T 12-10-2018 R615_08395 9dd09dec873e675cdec56915f8c01501 264 SUPERFAMILY SSF53335 44 186 1.95E-15 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_08395 9dd09dec873e675cdec56915f8c01501 264 Pfam PF08241 Methyltransferase domain 41 128 4.0E-8 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 R615_11905 1f43dc61e1e571a0d19681565bd69237 776 Pfam PF03176 MMPL family 46 381 5.5E-27 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_11905 1f43dc61e1e571a0d19681565bd69237 776 Pfam PF03176 MMPL family 445 764 2.3E-13 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_11905 1f43dc61e1e571a0d19681565bd69237 776 SUPERFAMILY SSF82866 156 376 3.01E-36 T 12-10-2018 R615_11905 1f43dc61e1e571a0d19681565bd69237 776 Gene3D G3DSA:1.20.1640.10 189 391 6.9E-16 T 12-10-2018 R615_11905 1f43dc61e1e571a0d19681565bd69237 776 Gene3D G3DSA:1.20.1640.10 574 771 4.4E-14 T 12-10-2018 R615_11905 1f43dc61e1e571a0d19681565bd69237 776 SUPERFAMILY SSF82866 589 763 5.49E-31 T 12-10-2018 R615_13955 d63a719ac968951f806fa9ae98e1affe 549 SUPERFAMILY SSF53649 79 437 8.5E-45 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 R615_13955 d63a719ac968951f806fa9ae98e1affe 549 Gene3D G3DSA:3.40.720.10 80 458 8.1E-43 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 R615_13955 d63a719ac968951f806fa9ae98e1affe 549 Pfam PF00884 Sulfatase 82 405 2.5E-20 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 R615_09830 1898d22966a1d3bf382b3d8a3ff3fbdc 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 264 35.116 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09830 1898d22966a1d3bf382b3d8a3ff3fbdc 267 Pfam PF00290 Tryptophan synthase alpha chain 8 262 4.6E-92 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09830 1898d22966a1d3bf382b3d8a3ff3fbdc 267 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 12-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_09830 1898d22966a1d3bf382b3d8a3ff3fbdc 267 Gene3D G3DSA:3.20.20.70 1 267 1.5E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_09830 1898d22966a1d3bf382b3d8a3ff3fbdc 267 SUPERFAMILY SSF51366 1 264 6.59E-94 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_09830 1898d22966a1d3bf382b3d8a3ff3fbdc 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 262 1.9E-78 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.2E-47 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 SUPERFAMILY SSF50692 1 116 2.24E-47 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 7.6E-46 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 Gene3D G3DSA:2.40.40.20 1 126 3.3E-51 T 12-10-2018 R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 6.0E-47 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 66.897 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 R615_02600 ff7afa60577986a755e50ab96f7b81a5 126 PIRSF PIRSF006246 1 125 2.7E-50 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 Gene3D G3DSA:1.10.10.60 230 338 3.5E-24 T 12-10-2018 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 41 204 6.3E-21 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 Pfam PF12833 Helix-turn-helix domain 254 331 4.0E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 SMART SM00342 248 330 9.9E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 5.7E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 5.7E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 SUPERFAMILY SSF46689 283 333 1.75E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_06580 edc47f7eb55e0148db2e8d64a559e85d 339 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 284 326 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_06855 26f9713041f2319a88e51a6ba7e0dac3 189 Gene3D G3DSA:3.40.50.2020 1 181 7.8E-26 T 12-10-2018 R615_06855 26f9713041f2319a88e51a6ba7e0dac3 189 Pfam PF00156 Phosphoribosyl transferase domain 4 163 1.3E-8 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_06855 26f9713041f2319a88e51a6ba7e0dac3 189 SUPERFAMILY SSF53271 4 167 2.71E-22 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_17240 f191fc6839da5c0aaead430c04da11b7 292 SUPERFAMILY SSF54001 129 272 1.77E-40 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_17240 f191fc6839da5c0aaead430c04da11b7 292 SMART SM00460 177 247 2.5E-20 T 12-10-2018 IPR002931 Transglutaminase-like R615_17240 f191fc6839da5c0aaead430c04da11b7 292 Gene3D G3DSA:3.10.620.30 97 282 1.2E-46 T 12-10-2018 R615_17240 f191fc6839da5c0aaead430c04da11b7 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 82 1.7E-23 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal R615_17240 f191fc6839da5c0aaead430c04da11b7 292 Pfam PF01841 Transglutaminase-like superfamily 134 245 2.4E-20 T 12-10-2018 IPR002931 Transglutaminase-like R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Pfam PF13533 Biotin-lipoyl like 187 221 1.9E-6 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Gene3D G3DSA:2.40.30.170 171 184 8.3E-6 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Gene3D G3DSA:2.40.30.170 256 333 2.3E-28 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Pfam PF13437 HlyD family secretion protein 227 317 6.9E-10 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Gene3D G3DSA:2.40.420.20 334 390 2.3E-28 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Gene3D G3DSA:2.40.420.20 160 170 8.3E-6 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Gene3D G3DSA:2.40.50.100 185 218 8.3E-6 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 Gene3D G3DSA:2.40.50.100 224 255 2.3E-28 T 12-10-2018 R615_15900 4357cc9c57906364f6c3aeaf6f0dcac4 412 SUPERFAMILY SSF111369 185 332 3.27E-8 T 12-10-2018 R615_16620 9453ba5633d5e64f81e46d541c8606e9 210 Pfam PF07813 LTXXQ motif family protein 31 78 2.2E-5 T 12-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 Gene3D G3DSA:3.40.50.720 1 163 1.2E-47 T 12-10-2018 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 266 26.461 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 SUPERFAMILY SSF51735 4 159 3.1E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_16500 caa45207d0d82dd8f6c13227094a7623 272 PIRSF PIRSF000193 1 269 4.3E-75 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 99 3.1E-19 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal R615_16500 caa45207d0d82dd8f6c13227094a7623 272 SUPERFAMILY SSF48179 162 269 5.78E-34 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 266 1.1E-77 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 Gene3D G3DSA:1.10.3730.10 164 270 6.2E-39 T 12-10-2018 R615_16500 caa45207d0d82dd8f6c13227094a7623 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 266 1.2E-33 T 12-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 R615_12915 1dccffe41a88f708b3f696462c679faf 245 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 6 148 2.4E-45 T 12-10-2018 IPR023370 YaeB-like, N-terminal domain R615_12915 1dccffe41a88f708b3f696462c679faf 245 Gene3D G3DSA:2.40.30.70 7 152 1.4E-49 T 12-10-2018 IPR036414 YaeB, N-terminal domain superfamily R615_12915 1dccffe41a88f708b3f696462c679faf 245 SUPERFAMILY SSF118196 7 224 5.75E-72 T 12-10-2018 IPR036413 YaeB-like superfamily R615_12915 1dccffe41a88f708b3f696462c679faf 245 Gene3D G3DSA:3.30.2310.10 153 232 4.4E-17 T 12-10-2018 R615_12915 1dccffe41a88f708b3f696462c679faf 245 Pfam PF01980 Uncharacterised protein family UPF0066 24 144 3.3E-41 T 12-10-2018 IPR023370 YaeB-like, N-terminal domain R615_12915 1dccffe41a88f708b3f696462c679faf 245 ProSitePatterns PS01318 TsaA-like domain signature. 92 103 - T 12-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site R615_15370 4faa2dbe1b5776563093b134fa976fcf 144 Pfam PF02657 Fe-S metabolism associated domain 19 138 1.3E-46 T 12-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like R615_15370 4faa2dbe1b5776563093b134fa976fcf 144 Gene3D G3DSA:3.90.1010.10 1 142 9.2E-51 T 12-10-2018 R615_15370 4faa2dbe1b5776563093b134fa976fcf 144 SUPERFAMILY SSF82649 4 140 2.67E-45 T 12-10-2018 R615_10820 914091888b5a95c8b6d62fa2a0116d09 295 SUPERFAMILY SSF53335 16 263 2.3E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_10820 914091888b5a95c8b6d62fa2a0116d09 295 Gene3D G3DSA:3.40.50.150 13 284 1.3E-59 T 12-10-2018 R615_10820 914091888b5a95c8b6d62fa2a0116d09 295 PIRSF PIRSF018249 5 283 7.5E-70 T 12-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 R615_10820 914091888b5a95c8b6d62fa2a0116d09 295 Pfam PF13649 Methyltransferase domain 96 168 3.5E-11 T 12-10-2018 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 Gene3D G3DSA:3.30.9.50 88 277 5.7E-96 T 12-10-2018 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 8.9E-14 T 12-10-2018 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 8.9E-14 T 12-10-2018 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 303 319 8.9E-14 T 12-10-2018 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 303 8.9E-14 T 12-10-2018 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 SUPERFAMILY SSF51905 7 393 7.89E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 Gene3D G3DSA:3.50.50.60 7 345 5.7E-96 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 398 1.1E-117 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 R615_16890 8b53a69933ddba9c942fa6baaa871cc7 407 Pfam PF01494 FAD binding domain 6 325 4.2E-24 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 R615_16185 5be29cb578f90d04c9a0027032de58ff 103 SUPERFAMILY SSF54999 5 101 2.22E-36 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily R615_16185 5be29cb578f90d04c9a0027032de58ff 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 2.6E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16185 5be29cb578f90d04c9a0027032de58ff 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 2.6E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16185 5be29cb578f90d04c9a0027032de58ff 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 2.6E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16185 5be29cb578f90d04c9a0027032de58ff 103 SMART SM01403 7 101 2.7E-54 T 12-10-2018 IPR027486 Ribosomal protein S10 domain R615_16185 5be29cb578f90d04c9a0027032de58ff 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.1E-45 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16185 5be29cb578f90d04c9a0027032de58ff 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 8.3E-35 T 12-10-2018 IPR027486 Ribosomal protein S10 domain R615_16185 5be29cb578f90d04c9a0027032de58ff 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.898 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16185 5be29cb578f90d04c9a0027032de58ff 103 Gene3D G3DSA:3.30.70.600 1 103 1.8E-37 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily R615_16185 5be29cb578f90d04c9a0027032de58ff 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 12-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 Pfam PF16331 TolA binding protein trimerisation 62 114 1.0E-13 T 12-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 145 252 2.6E-31 T 12-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal R615_06985 9105cf4b6a820fabc9f1942592528b34 271 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 2 264 16.813 T 12-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 SUPERFAMILY SSF48452 148 262 6.51E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 Pfam PF13432 Tetratricopeptide repeat 148 205 3.6E-8 T 12-10-2018 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 Gene3D G3DSA:1.20.5.110 51 118 1.0E-6 T 12-10-2018 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 Gene3D G3DSA:1.25.40.10 145 266 5.0E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_06985 9105cf4b6a820fabc9f1942592528b34 271 Pfam PF13174 Tetratricopeptide repeat 219 249 0.011 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 Gene3D G3DSA:1.20.81.30 56 173 1.8E-29 T 12-10-2018 R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 Gene3D G3DSA:1.20.81.30 257 369 7.0E-28 T 12-10-2018 R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 9.4E-27 T 12-10-2018 IPR018076 Type II secretion system F domain R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 4.2E-28 T 12-10-2018 IPR018076 Type II secretion system F domain R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 8.0E-14 T 12-10-2018 IPR003004 GspF/PilC family R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 8.0E-14 T 12-10-2018 IPR003004 GspF/PilC family R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 8.0E-14 T 12-10-2018 IPR003004 GspF/PilC family R615_02835 37189ca94dc9ce82ad1fa2d99902e661 407 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 8.0E-14 T 12-10-2018 IPR003004 GspF/PilC family R615_14630 862876ecf0584b0ff5705d0f57a9fb28 64 Pfam PF02599 Global regulator protein family 1 52 4.8E-26 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 R615_14630 862876ecf0584b0ff5705d0f57a9fb28 64 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 2.1E-29 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 R615_14630 862876ecf0584b0ff5705d0f57a9fb28 64 Gene3D G3DSA:3.30.70.1680 1 59 1.7E-29 T 12-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 R615_14630 862876ecf0584b0ff5705d0f57a9fb28 64 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 64 17.086 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 R615_14630 862876ecf0584b0ff5705d0f57a9fb28 64 SUPERFAMILY SSF117130 1 54 1.83E-20 T 12-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 R615_14630 862876ecf0584b0ff5705d0f57a9fb28 64 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 1.0E-19 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 R615_13935 1676c639b202c3d9b3ce516174794e50 447 PRINTS PR00175 Sodium/alanine symporter signature 88 110 1.9E-56 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 PRINTS PR00175 Sodium/alanine symporter signature 213 232 1.9E-56 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 PRINTS PR00175 Sodium/alanine symporter signature 185 203 1.9E-56 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 PRINTS PR00175 Sodium/alanine symporter signature 411 431 1.9E-56 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 PRINTS PR00175 Sodium/alanine symporter signature 352 374 1.9E-56 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 PRINTS PR00175 Sodium/alanine symporter signature 308 326 1.9E-56 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 88 103 - T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 2.9E-152 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_13935 1676c639b202c3d9b3ce516174794e50 447 Gene3D G3DSA:1.20.1740.10 56 377 5.5E-8 T 12-10-2018 R615_13935 1676c639b202c3d9b3ce516174794e50 447 Pfam PF01235 Sodium:alanine symporter family 51 447 2.3E-144 T 12-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 R615_02790 8be8bbc20d33573d654f7d5316c94566 154 Pfam PF00588 SpoU rRNA Methylase family 2 142 2.3E-32 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 R615_02790 8be8bbc20d33573d654f7d5316c94566 154 SUPERFAMILY SSF75217 1 153 7.85E-42 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_02790 8be8bbc20d33573d654f7d5316c94566 154 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 6.6E-64 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 R615_02790 8be8bbc20d33573d654f7d5316c94566 154 PIRSF PIRSF029256 1 154 2.6E-66 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 R615_02790 8be8bbc20d33573d654f7d5316c94566 154 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 33.377 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 R615_02790 8be8bbc20d33573d654f7d5316c94566 154 Gene3D G3DSA:3.40.1280.10 1 154 2.9E-67 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_01350 48f3736b8ca7fe37811483bb783f943f 409 Pfam PF01882 Protein of unknown function DUF58 204 289 1.4E-17 T 12-10-2018 IPR002881 Domain of unknown function DUF58 R615_04340 95094c15bb04197dc9effb7ff6db7907 782 Pfam PF13361 UvrD-like helicase C-terminal domain 336 625 1.1E-22 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 R615_04340 95094c15bb04197dc9effb7ff6db7907 782 Gene3D G3DSA:1.10.10.160 116 204 5.2E-54 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily R615_04340 95094c15bb04197dc9effb7ff6db7907 782 Gene3D G3DSA:3.40.50.300 308 650 9.5E-49 T 12-10-2018 R615_04340 95094c15bb04197dc9effb7ff6db7907 782 SUPERFAMILY SSF52540 13 634 2.23E-93 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04340 95094c15bb04197dc9effb7ff6db7907 782 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 281 2.4E-34 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 R615_04340 95094c15bb04197dc9effb7ff6db7907 782 Gene3D G3DSA:1.10.486.10 395 552 9.5E-49 T 12-10-2018 R615_04340 95094c15bb04197dc9effb7ff6db7907 782 Gene3D G3DSA:3.40.50.300 16 284 5.2E-54 T 12-10-2018 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 SUPERFAMILY SSF55785 414 536 2.09E-8 T 12-10-2018 IPR035965 PAS domain superfamily R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 671 780 3.3E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Gene3D G3DSA:2.60.40.2380 43 191 1.3E-23 T 12-10-2018 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Gene3D G3DSA:3.30.565.10 632 781 8.6E-22 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 424 543 8.1E-8 T 12-10-2018 IPR000014 PAS domain R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Pfam PF00989 PAS fold 425 524 1.2E-6 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 SUPERFAMILY SSF55874 643 780 1.44E-19 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Pfam PF07695 7TM diverse intracellular signalling 194 397 6.7E-49 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Gene3D G3DSA:3.30.450.20 421 535 3.7E-12 T 12-10-2018 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 SMART SM00388 555 623 5.6E-4 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 SUPERFAMILY SSF47384 549 599 2.55E-6 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 SMART SM00387 668 782 8.1E-10 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Gene3D G3DSA:1.10.287.130 536 620 4.8E-11 T 12-10-2018 R615_10440 a9b7bcd54332f487e669dfd7093f773e 792 Pfam PF07696 7TMR-DISM extracellular 2 48 180 2.4E-28 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 SUPERFAMILY SSF51971 148 401 1.71E-70 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 Gene3D G3DSA:3.50.50.60 259 400 5.3E-46 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 472 2.5E-236 T 12-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 SUPERFAMILY SSF46548 9 160 1.05E-37 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 459 2.9E-28 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 PRINTS PR00419 Adrenodoxin reductase family signature 174 187 6.3E-35 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 PRINTS PR00419 Adrenodoxin reductase family signature 216 226 6.3E-35 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 PRINTS PR00419 Adrenodoxin reductase family signature 151 173 6.3E-35 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 PRINTS PR00419 Adrenodoxin reductase family signature 326 339 6.3E-35 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 6.3E-35 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 Gene3D G3DSA:1.10.1060.10 13 148 2.0E-33 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 Gene3D G3DSA:3.40.50.720 149 258 2.2E-19 T 12-10-2018 R615_15220 0817dca09a654b81e0dafeaadeb6f9ec 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 28 137 1.0E-37 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 Gene3D G3DSA:3.40.50.150 245 446 1.7E-63 T 12-10-2018 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 23 446 1.7E-121 T 12-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 Gene3D G3DSA:3.30.70.1170 187 244 1.8E-20 T 12-10-2018 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 SUPERFAMILY SSF53335 154 445 8.96E-76 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 Gene3D G3DSA:1.10.287.730 160 186 3.2E-9 T 12-10-2018 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 Pfam PF01029 NusB family 21 140 5.6E-16 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 265 275 3.9E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 428 445 3.9E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 236 250 3.9E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 330 342 3.9E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 380 396 3.9E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 Gene3D G3DSA:1.10.940.10 17 157 1.9E-32 T 12-10-2018 IPR035926 NusB-like superfamily R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 Pfam PF01189 16S rRNA methyltransferase RsmB/F 254 443 1.1E-62 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 R615_00615 315d10aadbe503a4c995a338f22e4ef6 451 SUPERFAMILY SSF48013 20 163 1.24E-25 T 12-10-2018 IPR035926 NusB-like superfamily R615_10110 bb26ff9e53d897de813543534fae169f 1153 Gene3D G3DSA:3.40.50.300 322 796 3.7E-180 T 12-10-2018 R615_10110 bb26ff9e53d897de813543534fae169f 1153 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1074 6.2E-298 T 12-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 R615_10110 bb26ff9e53d897de813543534fae169f 1153 SUPERFAMILY SSF52540 356 796 1.59E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10110 bb26ff9e53d897de813543534fae169f 1153 SUPERFAMILY SSF52980 824 1126 4.24E-42 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 R615_10110 bb26ff9e53d897de813543534fae169f 1153 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1140 18.919 T 12-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 R615_10110 bb26ff9e53d897de813543534fae169f 1153 Gene3D G3DSA:1.10.486.10 444 658 3.7E-180 T 12-10-2018 R615_10110 bb26ff9e53d897de813543534fae169f 1153 PIRSF PIRSF000980 1 1135 0.0 T 12-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 R615_10110 bb26ff9e53d897de813543534fae169f 1153 Gene3D G3DSA:1.10.10.990 873 943 1.4E-11 T 12-10-2018 R615_10110 bb26ff9e53d897de813543534fae169f 1153 SUPERFAMILY SSF52540 1 333 5.84E-103 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10110 bb26ff9e53d897de813543534fae169f 1153 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 793 4.9E-279 T 12-10-2018 R615_10110 bb26ff9e53d897de813543534fae169f 1153 Gene3D G3DSA:1.10.10.160 78 192 2.5E-108 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily R615_10110 bb26ff9e53d897de813543534fae169f 1153 Gene3D G3DSA:3.40.50.10930 4 298 2.5E-108 T 12-10-2018 R615_02130 b7e00b60ae2a984d15ef6919489b618d 197 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 16 188 22.646 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 R615_02130 b7e00b60ae2a984d15ef6919489b618d 197 Gene3D G3DSA:2.60.450.10 34 192 1.8E-43 T 12-10-2018 R615_02130 b7e00b60ae2a984d15ef6919489b618d 197 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 33 188 3.8E-40 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 R615_02130 b7e00b60ae2a984d15ef6919489b618d 197 Pfam PF03968 OstA-like protein 43 155 3.4E-25 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 Pfam PF14579 Helix-hairpin-helix motif 761 843 2.6E-18 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 271 686 1.1E-135 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 Pfam PF02811 PHP domain 12 102 4.0E-14 T 12-10-2018 IPR004013 PHP domain GO:0003824 R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 10 1015 12.76 T 12-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 11 849 4.7E-154 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 Gene3D G3DSA:3.20.20.140 6 249 1.6E-46 T 12-10-2018 R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 SMART SM00481 11 80 3.0E-13 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal R615_03570 01da1e2eef836aadbdd9134ccefa5202 1015 SUPERFAMILY SSF89550 10 194 2.75E-11 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 R615_07230 27e72f02f7adfd18de0cc01c4750c2fe 172 SUPERFAMILY SSF141523 4 160 1.7E-23 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like R615_07230 27e72f02f7adfd18de0cc01c4750c2fe 172 Pfam PF03734 L,D-transpeptidase catalytic domain 6 159 2.1E-17 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 R615_07230 27e72f02f7adfd18de0cc01c4750c2fe 172 Gene3D G3DSA:2.40.440.10 2 167 1.1E-27 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like R615_08870 5fa0a57c722725f150b924bbce593782 156 Pfam PF01526 Tn3 transposase DDE domain 2 130 8.4E-34 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 265 279 - T 12-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 147 357 5.6E-56 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 Gene3D G3DSA:3.30.360.10 143 354 1.8E-82 T 12-10-2018 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 SUPERFAMILY SSF51735 5 150 8.16E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 Gene3D G3DSA:3.40.50.720 3 142 8.7E-60 T 12-10-2018 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 SMART SM00859 5 125 7.6E-26 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 5 371 3.5E-193 T 12-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 PIRSF PIRSF000148 4 374 5.4E-68 T 12-10-2018 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 123 2.7E-25 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 SUPERFAMILY SSF55347 137 358 2.65E-77 T 12-10-2018 R615_09865 ee056aacd061a31176bddbd8c455d7eb 374 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 371 34.205 T 12-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_06540 dfc56ee5750e384e3cc91e8584552c6d 85 Gene3D G3DSA:1.10.260.40 1 85 3.1E-10 T 12-10-2018 R615_11020 8125316576180852b090982d80a9b727 391 Pfam PF12094 Protein of unknown function (DUF3570) 11 369 1.2E-54 T 12-10-2018 IPR021953 Protein of unknown function DUF3570 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Pfam PF00403 Heavy-metal-associated domain 28 84 2.7E-13 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Pfam PF00702 haloacid dehalogenase-like hydrolase 445 666 2.3E-38 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 SUPERFAMILY SSF81653 251 347 4.58E-29 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 162 762 4.6E-181 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 SUPERFAMILY SSF81665 213 723 1.31E-9 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 SUPERFAMILY SSF56784 449 758 9.42E-57 T 12-10-2018 IPR036412 HAD-like superfamily R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Pfam PF00122 E1-E2 ATPase 248 428 1.8E-54 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 451 457 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 297 311 4.9E-29 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 577 588 4.9E-29 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 599 609 4.9E-29 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 675 687 4.9E-29 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 449 463 4.9E-29 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 652 671 4.9E-29 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Gene3D G3DSA:3.30.70.100 25 89 1.5E-16 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Gene3D G3DSA:3.40.1110.10 460 584 3.0E-93 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 624 640 7.7E-9 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 683 708 7.7E-9 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 652 668 7.7E-9 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Gene3D G3DSA:2.70.150.20 240 352 2.3E-41 T 12-10-2018 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 SUPERFAMILY SSF55008 22 89 6.28E-17 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 227 740 7.2E-85 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 180 761 1.3E-185 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 R615_08915 0e292cf983880b5b6baeb09e35ae9ad2 769 Gene3D G3DSA:3.40.50.1000 430 704 3.0E-93 T 12-10-2018 IPR023214 HAD superfamily R615_06290 8058c48e5ff5117d619d155dd261e913 318 Gene3D G3DSA:3.40.50.720 1 130 5.3E-30 T 12-10-2018 R615_06290 8058c48e5ff5117d619d155dd261e913 318 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 151 208 1.6E-11 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 R615_06290 8058c48e5ff5117d619d155dd261e913 318 SUPERFAMILY SSF51735 3 159 4.07E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06290 8058c48e5ff5117d619d155dd261e913 318 Gene3D G3DSA:3.30.360.10 131 315 3.5E-62 T 12-10-2018 R615_06290 8058c48e5ff5117d619d155dd261e913 318 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 124 1.3E-19 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 R615_06290 8058c48e5ff5117d619d155dd261e913 318 SUPERFAMILY SSF55347 133 254 2.62E-9 T 12-10-2018 R615_01660 67a6e525907d5b5d550a7560a3079993 460 SUPERFAMILY SSF56281 10 431 1.4E-76 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_01660 67a6e525907d5b5d550a7560a3079993 460 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 374 414 1.9E-7 T 12-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain R615_01660 67a6e525907d5b5d550a7560a3079993 460 Pfam PF00753 Metallo-beta-lactamase superfamily 22 183 8.5E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_01660 67a6e525907d5b5d550a7560a3079993 460 Gene3D G3DSA:3.60.15.10 12 446 9.7E-152 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_01660 67a6e525907d5b5d550a7560a3079993 460 Gene3D G3DSA:3.40.50.10710 217 366 9.7E-152 T 12-10-2018 R615_01660 67a6e525907d5b5d550a7560a3079993 460 SMART SM00849 20 214 7.9E-21 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_15340 4bafd439bf1098caedaf6aca6ec9241c 333 SUPERFAMILY SSF56524 77 329 6.41E-90 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 R615_15340 4bafd439bf1098caedaf6aca6ec9241c 333 Pfam PF00174 Oxidoreductase molybdopterin binding domain 110 267 2.6E-28 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 R615_15340 4bafd439bf1098caedaf6aca6ec9241c 333 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 9 333 54.603 T 12-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 R615_15340 4bafd439bf1098caedaf6aca6ec9241c 333 Gene3D G3DSA:3.90.420.10 68 333 3.2E-105 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 R615_02185 db63937ef42c9d747030a1aceb98605b 434 Gene3D G3DSA:3.40.50.1980 34 236 3.5E-130 T 12-10-2018 R615_02185 db63937ef42c9d747030a1aceb98605b 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 9 432 40.749 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 37 61 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 205 230 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 175 201 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 141 167 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 234 255 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 366 384 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 256 275 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PRINTS PR00083 Histidinol dehydrogenase signature 325 350 5.3E-87 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 37 431 1.7E-162 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 PIRSF PIRSF000099 2 434 1.3E-160 T 12-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 Pfam PF00815 Histidinol dehydrogenase 29 431 2.4E-170 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 234 266 - T 12-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 R615_02185 db63937ef42c9d747030a1aceb98605b 434 SUPERFAMILY SSF53720 33 432 1.41E-89 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_02185 db63937ef42c9d747030a1aceb98605b 434 Gene3D G3DSA:3.40.50.1980 238 354 3.5E-130 T 12-10-2018 R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 SUPERFAMILY SSF47598 7 52 7.41E-8 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 Gene3D G3DSA:1.10.1220.10 9 54 1.5E-8 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 Hamap MF_00476 Nickel-responsive regulator [nikR]. 8 138 20.69 T 12-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 Pfam PF01402 Ribbon-helix-helix protein, copG family 10 47 5.3E-7 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 Gene3D G3DSA:3.30.70.1150 57 139 1.3E-22 T 12-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 Pfam PF08753 NikR C terminal nickel binding domain 61 134 4.6E-23 T 12-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal R615_05640 3fc3aaab0156abf87e2ca6df043fd967 149 SUPERFAMILY SSF55021 59 135 2.52E-18 T 12-10-2018 R615_10490 ee1d7bfde19598909c16a163d6c42c2d 213 Pfam PF02508 Rnf-Nqr subunit, membrane protein 25 210 2.7E-59 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_10490 ee1d7bfde19598909c16a163d6c42c2d 213 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 23 211 6.4E-87 T 12-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 R615_10490 ee1d7bfde19598909c16a163d6c42c2d 213 PIRSF PIRSF006102 21 213 1.7E-60 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 R615_10490 ee1d7bfde19598909c16a163d6c42c2d 213 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 22 211 25.911 T 12-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 R615_10275 eadefd5ee41eef4055e259a123eb0d07 96 Gene3D G3DSA:3.30.2310.20 1 92 1.3E-13 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_10275 eadefd5ee41eef4055e259a123eb0d07 96 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 92 6.5E-14 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family R615_10275 eadefd5ee41eef4055e259a123eb0d07 96 SUPERFAMILY SSF143011 1 89 1.22E-5 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_13350 3b01b286384c86a64ceb4df8b627cb73 139 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.5E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_13350 3b01b286384c86a64ceb4df8b627cb73 139 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.5E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_13350 3b01b286384c86a64ceb4df8b627cb73 139 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 132 4.1E-31 T 12-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 R615_13350 3b01b286384c86a64ceb4df8b627cb73 139 Gene3D G3DSA:3.90.79.10 1 136 9.7E-33 T 12-10-2018 R615_13350 3b01b286384c86a64ceb4df8b627cb73 139 Pfam PF00293 NUDIX domain 5 125 3.3E-21 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_13350 3b01b286384c86a64ceb4df8b627cb73 139 SUPERFAMILY SSF55811 4 130 1.14E-31 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 SMART SM01185 69 124 1.9E-15 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 SUPERFAMILY SSF50104 1 64 2.17E-12 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 ProSitePatterns PS01275 Elongation factor P signature. 153 172 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Gene3D G3DSA:2.40.50.140 131 188 2.1E-20 T 12-10-2018 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 SUPERFAMILY SSF50249 67 129 3.05E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 SMART SM00841 132 187 5.4E-26 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 PIRSF PIRSF005901 1 188 6.5E-60 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 SUPERFAMILY SSF50249 132 188 4.45E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Gene3D G3DSA:2.40.50.140 67 129 1.1E-15 T 12-10-2018 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 62 1.1E-17 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 188 40.288 T 12-10-2018 IPR011897 Translation elongation factor P-like, YeiP R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Gene3D G3DSA:2.30.30.30 1 63 1.8E-12 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Pfam PF09285 Elongation factor P, C-terminal 132 187 3.7E-19 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 R615_01915 aaafd5591d53aa2f221c80a609ee32d9 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 124 1.3E-14 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 R615_02470 021562840666a423c845b44509a60e86 506 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 242 505 4.6E-69 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 R615_02470 021562840666a423c845b44509a60e86 506 Pfam PF01256 Carbohydrate kinase 259 500 4.4E-61 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 R615_02470 021562840666a423c845b44509a60e86 506 Gene3D G3DSA:3.40.50.10260 12 223 6.3E-56 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 R615_02470 021562840666a423c845b44509a60e86 506 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 236 506 22.19 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 R615_02470 021562840666a423c845b44509a60e86 506 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 18 217 1.6E-41 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 R615_02470 021562840666a423c845b44509a60e86 506 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 17 218 22.088 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 R615_02470 021562840666a423c845b44509a60e86 506 Pfam PF03853 YjeF-related protein N-terminus 38 197 4.7E-42 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 R615_02470 021562840666a423c845b44509a60e86 506 Gene3D G3DSA:3.40.1190.20 234 506 7.3E-84 T 12-10-2018 IPR029056 Ribokinase-like R615_02470 021562840666a423c845b44509a60e86 506 SUPERFAMILY SSF64153 15 258 6.67E-56 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 R615_02470 021562840666a423c845b44509a60e86 506 PIRSF PIRSF017184 13 506 6.4E-125 T 12-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 R615_02470 021562840666a423c845b44509a60e86 506 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 445 455 - T 12-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site R615_02470 021562840666a423c845b44509a60e86 506 SUPERFAMILY SSF53613 241 505 8.89E-76 T 12-10-2018 IPR029056 Ribokinase-like R615_09720 f60fbfa5cd84facda6adcdb7bcacd738 224 Gene3D G3DSA:3.40.50.880 2 223 2.6E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_09720 f60fbfa5cd84facda6adcdb7bcacd738 224 Pfam PF07722 Peptidase C26 48 201 1.6E-45 T 12-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 R615_09720 f60fbfa5cd84facda6adcdb7bcacd738 224 SUPERFAMILY SSF52317 3 219 5.92E-36 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_11835 87664056e0af59510a48599b1a6b3cf0 338 SMART SM00342 252 334 3.9E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_11835 87664056e0af59510a48599b1a6b3cf0 338 Gene3D G3DSA:1.10.10.60 230 338 4.7E-25 T 12-10-2018 R615_11835 87664056e0af59510a48599b1a6b3cf0 338 Pfam PF12833 Helix-turn-helix domain 259 335 3.2E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_11835 87664056e0af59510a48599b1a6b3cf0 338 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 26 208 7.2E-47 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_11835 87664056e0af59510a48599b1a6b3cf0 338 SUPERFAMILY SSF46689 287 336 4.93E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 Pfam PF02080 TrkA-C domain 310 369 2.9E-9 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 Pfam PF02080 TrkA-C domain 220 287 1.3E-10 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 Pfam PF03600 Citrate transporter 19 537 1.1E-46 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 SUPERFAMILY SSF116726 306 382 1.96E-16 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 537 553 - T 12-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 SUPERFAMILY SSF116726 208 290 2.62E-16 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 Gene3D G3DSA:3.30.70.1450 216 290 6.7E-14 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_01030 ac191858edd81bda679ca3699c49e0f6 590 Gene3D G3DSA:3.30.70.1450 306 379 2.5E-13 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 R615_04570 6bbff684d09d40931bc9ac59c6a88f55 331 Gene3D G3DSA:3.40.190.170 55 315 5.3E-9 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_04870 b037e1ffbd803a6045c51fc35c052399 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 12 235 6.3E-72 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_04870 b037e1ffbd803a6045c51fc35c052399 327 Gene3D G3DSA:3.40.50.720 12 309 2.6E-109 T 12-10-2018 R615_04870 b037e1ffbd803a6045c51fc35c052399 327 Gene3D G3DSA:3.90.25.10 174 318 2.6E-109 T 12-10-2018 R615_04870 b037e1ffbd803a6045c51fc35c052399 327 SUPERFAMILY SSF51735 9 322 2.17E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04870 b037e1ffbd803a6045c51fc35c052399 327 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 9 320 47.684 T 12-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 R615_03495 84c159fa4e86ea21c6a797b4b2aa29af 114 Gene3D G3DSA:1.10.10.10 5 113 1.8E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_03495 84c159fa4e86ea21c6a797b4b2aa29af 114 SUPERFAMILY SSF46785 13 111 4.8E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_03495 84c159fa4e86ea21c6a797b4b2aa29af 114 SMART SM00418 22 106 0.0018 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_14260 0e6023bd317995548b3aaf669657b7d4 196 Pfam PF00571 CBS domain 68 121 8.9E-8 T 12-10-2018 IPR000644 CBS domain R615_14260 0e6023bd317995548b3aaf669657b7d4 196 Pfam PF00571 CBS domain 138 187 1.0E-9 T 12-10-2018 IPR000644 CBS domain R615_14260 0e6023bd317995548b3aaf669657b7d4 196 SMART SM00116 74 122 0.15 T 12-10-2018 IPR000644 CBS domain R615_14260 0e6023bd317995548b3aaf669657b7d4 196 SMART SM00116 139 187 4.4E-12 T 12-10-2018 IPR000644 CBS domain R615_14260 0e6023bd317995548b3aaf669657b7d4 196 Gene3D G3DSA:3.10.580.10 59 193 4.3E-27 T 12-10-2018 R615_14260 0e6023bd317995548b3aaf669657b7d4 196 SUPERFAMILY SSF54631 66 187 2.15E-25 T 12-10-2018 R615_17375 9db2ad16e8062f4661ddde03659340f8 134 SUPERFAMILY SSF46626 30 133 5.3E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_17375 9db2ad16e8062f4661ddde03659340f8 134 Gene3D G3DSA:1.10.760.10 20 134 1.7E-44 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_17375 9db2ad16e8062f4661ddde03659340f8 134 Pfam PF09086 Domain of unknown function (DUF1924) 40 131 1.0E-40 T 12-10-2018 IPR015170 Protein of unknown function DUF1924 R615_09860 417d6c6f279db4975a421b8e38559dae 1048 Gene3D G3DSA:1.20.58.2200 985 1048 4.3E-25 T 12-10-2018 IPR038440 FimV, C-terminal domain superfamily R615_09860 417d6c6f279db4975a421b8e38559dae 1048 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 1004 1047 3.2E-19 T 12-10-2018 IPR020011 Motility protein FimV, C-terminal R615_09860 417d6c6f279db4975a421b8e38559dae 1048 Gene3D G3DSA:1.25.40.10 572 651 7.1E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09860 417d6c6f279db4975a421b8e38559dae 1048 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 186 258 4.3E-28 T 12-10-2018 IPR020012 Motility protein FimV, N-terminal R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 SUPERFAMILY SSF47005 239 281 2.35E-11 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Gene3D G3DSA:2.40.50.100 120 198 7.5E-15 T 12-10-2018 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Gene3D G3DSA:2.40.50.100 2 79 3.1E-20 T 12-10-2018 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Pfam PF00364 Biotin-requiring enzyme 3 74 1.7E-19 T 12-10-2018 IPR000089 Biotin/lipoyl attachment R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Pfam PF00364 Biotin-requiring enzyme 122 193 7.7E-17 T 12-10-2018 IPR000089 Biotin/lipoyl attachment R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 SUPERFAMILY SSF51230 2 92 3.4E-21 T 12-10-2018 IPR011053 Single hybrid motif R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Pfam PF02817 e3 binding domain 242 277 2.7E-14 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Gene3D G3DSA:4.10.320.10 242 285 2.1E-19 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Gene3D G3DSA:3.30.559.10 293 537 5.0E-88 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 144 173 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 310 537 2.2E-76 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 SUPERFAMILY SSF52777 297 537 8.9E-79 T 12-10-2018 R615_13870 7a33fd6452ebd0d55b46ec01ef9bbe67 537 SUPERFAMILY SSF51230 120 209 1.3E-16 T 12-10-2018 IPR011053 Single hybrid motif R615_09670 4a0e87b333a9f55521127fc322007675 259 SUPERFAMILY SSF47807 163 255 1.94E-20 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily R615_09670 4a0e87b333a9f55521127fc322007675 259 Gene3D G3DSA:3.40.50.1010 1 164 4.1E-44 T 12-10-2018 R615_09670 4a0e87b333a9f55521127fc322007675 259 SUPERFAMILY SSF88723 4 163 7.57E-33 T 12-10-2018 IPR029060 PIN-like domain superfamily R615_09670 4a0e87b333a9f55521127fc322007675 259 SMART SM00279 166 201 5.9E-5 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 R615_09670 4a0e87b333a9f55521127fc322007675 259 SMART SM00475 3 254 8.0E-48 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 R615_09670 4a0e87b333a9f55521127fc322007675 259 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 165 254 7.5E-20 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 R615_09670 4a0e87b333a9f55521127fc322007675 259 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 163 1.5E-31 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 R615_09670 4a0e87b333a9f55521127fc322007675 259 Gene3D G3DSA:1.10.150.20 166 255 1.4E-19 T 12-10-2018 R615_04850 97f34a27797dccf18ffbcd4f0abeb2eb 375 Gene3D G3DSA:3.40.50.2000 171 354 2.9E-23 T 12-10-2018 R615_04850 97f34a27797dccf18ffbcd4f0abeb2eb 375 Pfam PF13692 Glycosyl transferases group 1 202 336 1.9E-13 T 12-10-2018 R615_04850 97f34a27797dccf18ffbcd4f0abeb2eb 375 Gene3D G3DSA:3.40.50.2000 26 363 2.9E-23 T 12-10-2018 R615_04850 97f34a27797dccf18ffbcd4f0abeb2eb 375 SUPERFAMILY SSF53756 30 363 8.9E-28 T 12-10-2018 R615_07440 de6427618da145f0af9e1854a09fbbed 467 Gene3D G3DSA:3.40.50.300 193 392 1.1E-43 T 12-10-2018 R615_07440 de6427618da145f0af9e1854a09fbbed 467 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 249 372 3.7E-28 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_07440 de6427618da145f0af9e1854a09fbbed 467 SMART SM00382 244 376 6.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_07440 de6427618da145f0af9e1854a09fbbed 467 SUPERFAMILY SSF52540 201 431 3.18E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02400 9d1950e29d81d733837fe90af6626f0d 319 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 14 314 2.0E-107 T 12-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 SUPERFAMILY SSF55681 8 317 8.09E-66 T 12-10-2018 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 Pfam PF00152 tRNA synthetases class II (D, K and N) 9 314 2.9E-37 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 PRINTS PR00982 Lysyl-tRNA synthetase signature 28 38 2.9E-9 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 PRINTS PR00982 Lysyl-tRNA synthetase signature 74 87 2.9E-9 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 PRINTS PR00982 Lysyl-tRNA synthetase signature 202 218 2.9E-9 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 PRINTS PR00982 Lysyl-tRNA synthetase signature 92 109 2.9E-9 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 R615_02400 9d1950e29d81d733837fe90af6626f0d 319 Gene3D G3DSA:3.30.930.10 1 319 9.2E-89 T 12-10-2018 R615_06690 4232d3543a3359432dc37be4525a8701 197 Gene3D G3DSA:3.40.50.10490 2 195 4.3E-64 T 12-10-2018 R615_06690 4232d3543a3359432dc37be4525a8701 197 SUPERFAMILY SSF53697 6 190 4.0E-48 T 12-10-2018 R615_06690 4232d3543a3359432dc37be4525a8701 197 Pfam PF13580 SIS domain 28 148 4.4E-26 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 R615_06690 4232d3543a3359432dc37be4525a8701 197 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 3 191 35.194 T 12-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 SUPERFAMILY SSF54211 134 276 1.59E-51 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 Gene3D G3DSA:3.30.1700.10 128 300 1.9E-66 T 12-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 SUPERFAMILY SSF54211 3 125 6.37E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 46.247 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 5.1E-108 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 Gene3D G3DSA:3.30.230.20 1 127 2.2E-49 T 12-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 R615_13370 edd31fe870ff0545a75d0c3200dabc60 301 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 291 3.8E-119 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 R615_03820 0d9b96cad8a0225b8d9f1f7c0ea62048 319 Gene3D G3DSA:3.20.20.220 3 316 2.8E-104 T 12-10-2018 R615_03820 0d9b96cad8a0225b8d9f1f7c0ea62048 319 SUPERFAMILY SSF51730 9 286 1.04E-29 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like R615_03820 0d9b96cad8a0225b8d9f1f7c0ea62048 319 Pfam PF02219 Methylenetetrahydrofolate reductase 170 272 1.5E-4 T 12-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 R615_13945 60cb26b8ba692b6833f11396e2a430c5 162 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.6E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_13945 60cb26b8ba692b6833f11396e2a430c5 162 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 8.7E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_13945 60cb26b8ba692b6833f11396e2a430c5 162 Gene3D G3DSA:3.30.700.10 7 162 2.2E-28 T 12-10-2018 R615_13945 60cb26b8ba692b6833f11396e2a430c5 162 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_13945 60cb26b8ba692b6833f11396e2a430c5 162 SUPERFAMILY SSF54523 7 148 3.92E-20 T 12-10-2018 R615_06165 c161d3266f521cf4d78fe42637dea54f 206 Gene3D G3DSA:3.90.870.10 1 206 6.1E-61 T 12-10-2018 R615_06165 c161d3266f521cf4d78fe42637dea54f 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 201 6.5E-58 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 R615_06165 c161d3266f521cf4d78fe42637dea54f 206 SUPERFAMILY SSF55821 2 204 1.71E-61 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily R615_06165 c161d3266f521cf4d78fe42637dea54f 206 Pfam PF01300 Telomere recombination 22 198 1.2E-40 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 R615_06830 84da4db19e2e14c3b4fc7e240220771e 398 Pfam PF02687 FtsX-like permease family 304 391 3.0E-10 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 R615_06830 84da4db19e2e14c3b4fc7e240220771e 398 Pfam PF12704 MacB-like periplasmic core domain 21 240 4.7E-34 T 12-10-2018 IPR025857 MacB-like periplasmic core domain R615_14815 b6c77cc0e46564e645dc5e902dcae01e 86 Gene3D G3DSA:2.30.30.320 5 85 7.5E-28 T 12-10-2018 IPR037135 DUF1653-like domain superfamily R615_14815 b6c77cc0e46564e645dc5e902dcae01e 86 Pfam PF07866 Protein of unknown function (DUF1653) 15 74 6.9E-26 T 12-10-2018 IPR023387 DUF1653-like domain R615_15250 ff87d4777243c9c350707895d4cc4675 179 PIRSF PIRSF016481 1 176 1.9E-48 T 12-10-2018 IPR007446 Pilus assembly protein PilP R615_15250 ff87d4777243c9c350707895d4cc4675 179 Pfam PF04351 Pilus assembly protein, PilP 27 173 2.6E-48 T 12-10-2018 IPR007446 Pilus assembly protein PilP R615_15250 ff87d4777243c9c350707895d4cc4675 179 Gene3D G3DSA:2.30.30.830 80 174 9.0E-32 T 12-10-2018 R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 Gene3D G3DSA:3.40.50.300 1 211 9.7E-79 T 12-10-2018 R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 Gene3D G3DSA:3.40.50.300 214 415 4.7E-49 T 12-10-2018 R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 Pfam PF00271 Helicase conserved C-terminal domain 242 339 1.1E-26 T 12-10-2018 IPR001650 Helicase, C-terminal R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 SMART SM00487 21 222 3.0E-63 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 SUPERFAMILY SSF52540 74 358 4.01E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 Pfam PF00270 DEAD/DEAH box helicase 26 196 5.6E-55 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_01160 16ceac50c25b3f3ef7f708340f7cd8f9 416 SMART SM00490 258 339 2.1E-33 T 12-10-2018 IPR001650 Helicase, C-terminal R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 SUPERFAMILY SSF90123 24 339 1.57E-59 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 SMART SM00382 382 574 1.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 Pfam PF00005 ABC transporter 373 522 6.1E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 SUPERFAMILY SSF52540 349 592 1.18E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 Gene3D G3DSA:1.20.1560.10 24 347 4.8E-105 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 Gene3D G3DSA:3.40.50.300 348 606 9.8E-90 T 12-10-2018 R615_09675 3f6afd62a3243f6fb3abb28688d4b178 613 Pfam PF00664 ABC transporter transmembrane region 36 311 3.7E-32 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 R615_07280 f60b9ada7492907925351505078a7c9e 265 SMART SM00900 153 251 9.7E-33 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 R615_07280 f60b9ada7492907925351505078a7c9e 265 PIRSF PIRSF009437 1 265 5.9E-91 T 12-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 R615_07280 f60b9ada7492907925351505078a7c9e 265 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 259 1.5E-77 T 12-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 R615_07280 f60b9ada7492907925351505078a7c9e 265 Pfam PF04205 FMN-binding domain 153 247 9.8E-17 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 R615_07280 f60b9ada7492907925351505078a7c9e 265 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 6 264 35.318 T 12-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 10 270 3.7E-105 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 Gene3D G3DSA:3.40.50.620 85 218 2.6E-100 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_02640 241489cd7229b4bc7f215f0c1253df55 299 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 10 290 39.254 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 Gene3D G3DSA:3.40.50.620 10 281 2.6E-100 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_02640 241489cd7229b4bc7f215f0c1253df55 299 SUPERFAMILY SSF52374 10 281 1.38E-80 T 12-10-2018 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 11 117 2.1E-27 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 156 242 4.5E-17 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 27 38 1.4E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 42 55 1.4E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 13 25 1.4E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 1.4E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_02640 241489cd7229b4bc7f215f0c1253df55 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 1.4E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 R615_05050 3687452603c87329a3b320157567fdd9 310 Pfam PF00472 RF-1 domain 173 282 6.1E-40 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 R615_05050 3687452603c87329a3b320157567fdd9 310 SMART SM00937 30 140 5.8E-52 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 R615_05050 3687452603c87329a3b320157567fdd9 310 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 308 4.9E-151 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 R615_05050 3687452603c87329a3b320157567fdd9 310 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 310 33.332 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 R615_05050 3687452603c87329a3b320157567fdd9 310 SUPERFAMILY SSF75620 1 309 1.12E-126 T 12-10-2018 R615_05050 3687452603c87329a3b320157567fdd9 310 Gene3D G3DSA:1.20.58.410 1 61 3.9E-12 T 12-10-2018 R615_05050 3687452603c87329a3b320157567fdd9 310 Gene3D G3DSA:3.30.70.1660 75 303 1.7E-96 T 12-10-2018 R615_05050 3687452603c87329a3b320157567fdd9 310 Pfam PF03462 PCRF domain 2 165 2.2E-49 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 R615_05050 3687452603c87329a3b320157567fdd9 310 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 R615_05050 3687452603c87329a3b320157567fdd9 310 Gene3D G3DSA:3.30.160.20 171 266 1.7E-96 T 12-10-2018 R615_06730 da7b934383cf17d35857e812fb090386 334 SUPERFAMILY SSF46589 13 99 3.35E-23 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 R615_06730 da7b934383cf17d35857e812fb090386 334 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.2E-26 T 12-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 R615_06730 da7b934383cf17d35857e812fb090386 334 Gene3D G3DSA:3.30.930.10 7 334 3.2E-123 T 12-10-2018 R615_06730 da7b934383cf17d35857e812fb090386 334 SUPERFAMILY SSF55681 92 334 4.75E-79 T 12-10-2018 R615_06730 da7b934383cf17d35857e812fb090386 334 Pfam PF01409 tRNA synthetases class II core domain (F) 92 333 2.8E-107 T 12-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 R615_06730 da7b934383cf17d35857e812fb090386 334 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 333 1.3E-108 T 12-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 R615_06730 da7b934383cf17d35857e812fb090386 334 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 333 48.957 T 12-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 R615_08295 2556b3a3cde970b28027c0a7f8a1193b 206 Pfam PF03458 UPF0126 domain 6 78 1.2E-19 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 R615_08295 2556b3a3cde970b28027c0a7f8a1193b 206 Pfam PF03458 UPF0126 domain 90 163 2.2E-22 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 R615_07120 bf2528c9e47abad60e3cc79e33961834 273 TIGRFAM TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family 13 259 7.7E-63 T 12-10-2018 IPR006381 HAD-superfamily hydrolase, superfamily IIB, MPGP GO:0005737|GO:0050531|GO:0051479 KEGG: 00051+3.1.3.70|MetaCyc: PWY-5656 R615_07120 bf2528c9e47abad60e3cc79e33961834 273 Gene3D G3DSA:3.30.980.20 94 185 2.3E-75 T 12-10-2018 R615_07120 bf2528c9e47abad60e3cc79e33961834 273 SUPERFAMILY SSF56784 13 231 2.59E-39 T 12-10-2018 IPR036412 HAD-like superfamily R615_07120 bf2528c9e47abad60e3cc79e33961834 273 Gene3D G3DSA:3.40.50.1000 13 230 2.3E-75 T 12-10-2018 IPR023214 HAD superfamily R615_07120 bf2528c9e47abad60e3cc79e33961834 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 183 239 8.4E-5 T 12-10-2018 R615_07120 bf2528c9e47abad60e3cc79e33961834 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 14 115 1.0E-9 T 12-10-2018 R615_07120 bf2528c9e47abad60e3cc79e33961834 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 14 229 5.2E-20 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 R615_04095 e48d5f501ec485547e3444c30448ed80 273 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 235 1.2E-35 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 R615_04095 e48d5f501ec485547e3444c30448ed80 273 PIRSF PIRSF016184 1 271 1.3E-54 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 R615_04095 e48d5f501ec485547e3444c30448ed80 273 Pfam PF02567 Phenazine biosynthesis-like protein 17 261 5.4E-54 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 R615_04095 e48d5f501ec485547e3444c30448ed80 273 Gene3D G3DSA:3.10.310.10 124 259 2.4E-84 T 12-10-2018 R615_04095 e48d5f501ec485547e3444c30448ed80 273 SUPERFAMILY SSF54506 1 271 2.0E-68 T 12-10-2018 R615_04095 e48d5f501ec485547e3444c30448ed80 273 Gene3D G3DSA:3.10.310.10 6 261 2.4E-84 T 12-10-2018 R615_01280 8d7b8dc6e37c609cc6e69421b04a16a2 150 Gene3D G3DSA:2.40.50.180 27 98 7.1E-8 T 12-10-2018 R615_01280 8d7b8dc6e37c609cc6e69421b04a16a2 150 SMART SM00260 4 143 0.0014 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_01280 8d7b8dc6e37c609cc6e69421b04a16a2 150 SUPERFAMILY SSF50341 7 140 4.45E-15 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_01280 8d7b8dc6e37c609cc6e69421b04a16a2 150 Gene3D G3DSA:2.30.30.40 22 120 7.1E-8 T 12-10-2018 R615_01280 8d7b8dc6e37c609cc6e69421b04a16a2 150 Pfam PF01584 CheW-like domain 9 142 5.5E-15 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05035 001d107198b4094b5495c04a7db678e2 119 SUPERFAMILY SSF160214 40 109 2.09E-19 T 12-10-2018 IPR035924 FlaG-like superfamily R615_05035 001d107198b4094b5495c04a7db678e2 119 Gene3D G3DSA:3.30.160.170 14 110 1.2E-12 T 12-10-2018 IPR035924 FlaG-like superfamily R615_05035 001d107198b4094b5495c04a7db678e2 119 Pfam PF03646 FlaG protein 31 114 1.2E-18 T 12-10-2018 IPR005186 FlaG protein R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 SMART SM01027 249 389 1.7E-51 T 12-10-2018 IPR022712 Beta-Casp domain R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 Gene3D G3DSA:3.40.50.10890 217 418 1.9E-122 T 12-10-2018 R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 406 458 6.3E-11 T 12-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 Pfam PF00753 Metallo-beta-lactamase superfamily 23 203 3.3E-12 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 Gene3D G3DSA:3.60.15.10 7 450 1.9E-122 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 SUPERFAMILY SSF56281 3 459 6.77E-113 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 SMART SM00849 14 229 1.8E-10 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04995 8458ae8b5dd3c479c4cfa923288bb97b 472 Pfam PF10996 Beta-Casp domain 249 389 1.8E-25 T 12-10-2018 IPR022712 Beta-Casp domain R615_08565 14243d7aec5948c23a36e8d36a761abd 358 PIRSF PIRSF006268 7 349 1.3E-87 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 R615_08565 14243d7aec5948c23a36e8d36a761abd 358 SUPERFAMILY SSF143631 37 345 1.7E-94 T 12-10-2018 IPR003374 ApbE-like superfamily R615_08565 14243d7aec5948c23a36e8d36a761abd 358 Pfam PF02424 ApbE family 44 326 2.2E-79 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 R615_08565 14243d7aec5948c23a36e8d36a761abd 358 Gene3D G3DSA:3.10.520.20 26 353 2.7E-105 T 12-10-2018 R615_02675 38ccea07212a3d7115570249e8114aff 110 Gene3D G3DSA:2.102.10.10 1 107 6.1E-21 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_02675 38ccea07212a3d7115570249e8114aff 110 SUPERFAMILY SSF50022 3 103 1.17E-26 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_02675 38ccea07212a3d7115570249e8114aff 110 Pfam PF00355 Rieske [2Fe-2S] domain 3 87 7.7E-15 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 SUPERFAMILY SSF46604 88 136 3.4E-13 T 12-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 SUPERFAMILY SSF51344 4 86 1.1E-24 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 19.7 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 Gene3D G3DSA:1.20.5.440 91 133 3.4E-15 T 12-10-2018 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 133 2.2E-9 T 12-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 5.2E-31 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 1.3E-41 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 Gene3D G3DSA:2.60.15.10 3 90 5.9E-32 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17300 36ab93f721940fbda6a36c1c6ae66bc5 142 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 86 1.0E-25 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_00945 d8ea89e04d206bea61b5d2d23642900e 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 2.9E-75 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 R615_00945 d8ea89e04d206bea61b5d2d23642900e 224 SUPERFAMILY SSF47781 18 90 5.34E-10 T 12-10-2018 IPR010994 RuvA domain 2-like R615_00945 d8ea89e04d206bea61b5d2d23642900e 224 SUPERFAMILY SSF102712 122 195 4.71E-5 T 12-10-2018 R615_00945 d8ea89e04d206bea61b5d2d23642900e 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site R615_00945 d8ea89e04d206bea61b5d2d23642900e 224 Gene3D G3DSA:3.40.140.10 101 224 4.8E-42 T 12-10-2018 R615_00945 d8ea89e04d206bea61b5d2d23642900e 224 Pfam PF04002 RadC-like JAB domain 103 222 6.3E-44 T 12-10-2018 IPR025657 RadC-like JAB domain R615_02770 2477e4483e775534cda6f32ba587f5b3 524 Pfam PF13751 Transposase DDE domain 384 516 1.2E-29 T 12-10-2018 IPR025668 Transposase DDE domain R615_02770 2477e4483e775534cda6f32ba587f5b3 524 Pfam PF05598 Transposase domain (DUF772) 55 124 1.1E-15 T 12-10-2018 IPR008490 Transposase InsH, N-terminal R615_11650 2477e4483e775534cda6f32ba587f5b3 524 Pfam PF13751 Transposase DDE domain 384 516 1.2E-29 T 12-10-2018 IPR025668 Transposase DDE domain R615_11650 2477e4483e775534cda6f32ba587f5b3 524 Pfam PF05598 Transposase domain (DUF772) 55 124 1.1E-15 T 12-10-2018 IPR008490 Transposase InsH, N-terminal R615_01200 f4310a36d5075d3b3fb648a386edec13 917 Pfam PF12633 Adenylate cyclase NT domain 15 206 1.6E-72 T 12-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 R615_01200 f4310a36d5075d3b3fb648a386edec13 917 PIRSF PIRSF001444 9 812 1.1E-194 T 12-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 R615_01200 f4310a36d5075d3b3fb648a386edec13 917 Pfam PF01295 Adenylate cyclase, class-I 233 761 1.4E-98 T 12-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 R615_13525 824de4141cabc80b7c51528cac7d93bd 609 Gene3D G3DSA:1.20.1530.20 2 395 6.7E-14 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_13525 824de4141cabc80b7c51528cac7d93bd 609 SUPERFAMILY SSF51735 400 498 9.86E-7 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_13525 824de4141cabc80b7c51528cac7d93bd 609 Gene3D G3DSA:3.40.50.720 398 510 1.7E-9 T 12-10-2018 R615_13525 824de4141cabc80b7c51528cac7d93bd 609 Pfam PF02254 TrkA-N domain 401 498 7.3E-6 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 R615_13525 824de4141cabc80b7c51528cac7d93bd 609 Pfam PF00999 Sodium/hydrogen exchanger family 10 389 1.3E-36 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 Pfam PF00691 OmpA family 83 178 1.5E-19 T 12-10-2018 IPR006665 OmpA-like domain R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 82 184 1.7E-42 T 12-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 Gene3D G3DSA:3.30.1330.60 55 184 4.6E-38 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 4 184 30.5 T 12-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 SUPERFAMILY SSF103088 73 183 1.57E-33 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 PRINTS PR01021 OMPA domain signature 84 106 2.8E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 PRINTS PR01021 OMPA domain signature 114 129 2.8E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_06980 9d7d0fbdec2a87c2f8e6fad820a0a3d0 187 PRINTS PR01021 OMPA domain signature 129 145 2.8E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 Pfam PF00216 Bacterial DNA-binding protein 1 89 3.6E-32 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 SMART SM00411 1 90 1.3E-36 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.1E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.1E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.1E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 Gene3D G3DSA:4.10.520.10 1 90 6.9E-35 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_00820 2981df57fd7c12c55f93f2a85306be42 90 SUPERFAMILY SSF47729 1 90 8.39E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_12345 5242e561c20991357b8d7a31bbfda3ec 358 SUPERFAMILY SSF53955 160 356 2.82E-36 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_12345 5242e561c20991357b8d7a31bbfda3ec 358 Pfam PF11873 Domain of unknown function (DUF3393) 50 188 4.9E-44 T 12-10-2018 IPR024570 Murein transglycosylase-C, N-terminal R615_12345 5242e561c20991357b8d7a31bbfda3ec 358 Gene3D G3DSA:1.10.530.10 176 354 3.1E-52 T 12-10-2018 R615_12345 5242e561c20991357b8d7a31bbfda3ec 358 Pfam PF01464 Transglycosylase SLT domain 196 319 1.8E-29 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 R615_12345 5242e561c20991357b8d7a31bbfda3ec 358 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 212 240 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 R615_02030 3633057631eb177c150957c815338c0e 85 Gene3D G3DSA:1.10.8.1250 7 81 3.5E-13 T 12-10-2018 IPR038296 Antitoxin ParD superfamily R615_02030 3633057631eb177c150957c815338c0e 85 SUPERFAMILY SSF47598 1 43 1.89E-9 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 R615_02030 3633057631eb177c150957c815338c0e 85 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 3 59 5.5E-8 T 12-10-2018 IPR022789 Antitoxin ParD R615_02030 3633057631eb177c150957c815338c0e 85 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 1 61 9.8E-16 T 12-10-2018 IPR022789 Antitoxin ParD R615_03005 6e750e036f40945ffb38f9280b3ead99 193 Pfam PF01569 PAP2 superfamily 78 185 7.6E-22 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase R615_03005 6e750e036f40945ffb38f9280b3ead99 193 Gene3D G3DSA:1.20.144.10 87 187 9.7E-24 T 12-10-2018 R615_03005 6e750e036f40945ffb38f9280b3ead99 193 SUPERFAMILY SSF48317 21 185 2.09E-34 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily R615_03005 6e750e036f40945ffb38f9280b3ead99 193 SMART SM00014 72 181 2.7E-19 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 SUPERFAMILY SSF140990 404 606 1.7E-72 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Pfam PF01434 Peptidase family M41 384 595 1.1E-77 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Gene3D G3DSA:2.40.50.920 24 99 2.6E-18 T 12-10-2018 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 596 7.5E-232 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Pfam PF06480 FtsH Extracellular 6 91 7.0E-14 T 12-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 ProSitePatterns PS00674 AAA-protein family signature. 293 311 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Gene3D G3DSA:1.10.8.60 325 398 3.5E-29 T 12-10-2018 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 605 36.898 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 322 4.8E-45 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Gene3D G3DSA:1.20.58.760 399 602 5.8E-72 T 12-10-2018 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 Gene3D G3DSA:3.40.50.300 138 324 7.6E-69 T 12-10-2018 R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 SMART SM00382 186 325 3.8E-24 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_04010 4ea06eda0751938c22e8b1b3c5f62087 640 SUPERFAMILY SSF52540 145 393 1.07E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 Gene3D G3DSA:3.40.30.10 32 143 5.6E-31 T 12-10-2018 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 TIGRFAM TIGR01068 thioredoxin: thioredoxin 41 139 5.8E-35 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 Pfam PF00085 Thioredoxin 38 138 6.7E-29 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 PRINTS PR00421 Thioredoxin family signature 104 115 2.8E-8 T 12-10-2018 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 PRINTS PR00421 Thioredoxin family signature 56 64 2.8E-8 T 12-10-2018 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 PRINTS PR00421 Thioredoxin family signature 64 73 2.8E-8 T 12-10-2018 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 SUPERFAMILY SSF52833 25 140 1.91E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 PIRSF PIRSF000077 35 140 3.2E-34 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 R615_03235 4cdc1aa36126d4d04d6a6fbc40a356ca 147 Gene3D G3DSA:2.20.28.140 1 31 8.8E-11 T 12-10-2018 R615_04000 8adb7ae1979f406553910084b7cfbfb2 101 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 11 90 3.0E-21 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 R615_04000 8adb7ae1979f406553910084b7cfbfb2 101 Gene3D G3DSA:3.30.110.60 1 100 9.3E-28 T 12-10-2018 IPR035920 YhbY-like superfamily R615_04000 8adb7ae1979f406553910084b7cfbfb2 101 SUPERFAMILY SSF75471 1 96 3.14E-25 T 12-10-2018 IPR035920 YhbY-like superfamily R615_04000 8adb7ae1979f406553910084b7cfbfb2 101 SMART SM01103 3 86 5.3E-32 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 R615_04000 8adb7ae1979f406553910084b7cfbfb2 101 Pfam PF01985 CRS1 / YhbY (CRM) domain 4 86 4.8E-17 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 Gene3D G3DSA:3.40.50.1000 2 230 1.1E-53 T 12-10-2018 IPR023214 HAD superfamily R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 Gene3D G3DSA:3.40.50.2000 515 724 4.1E-153 T 12-10-2018 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 Gene3D G3DSA:3.40.50.2000 280 735 4.1E-153 T 12-10-2018 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 TIGRFAM TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase 257 742 1.5E-232 T 12-10-2018 IPR012764 Glucosylglycerol-phosphate synthase GO:0016758|GO:0051473 MetaCyc: PWY-7902 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 2 188 1.2E-14 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 Gene3D G3DSA:3.90.1070.10 88 152 1.1E-53 T 12-10-2018 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 Pfam PF00982 Glycosyltransferase family 20 253 738 2.5E-136 T 12-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 SUPERFAMILY SSF53756 252 737 3.3E-136 T 12-10-2018 R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 SUPERFAMILY SSF56784 2 231 3.6E-27 T 12-10-2018 IPR036412 HAD-like superfamily R615_13570 1862ea6b920dc0caf797c6f0ff438401 752 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 2 233 2.0E-55 T 12-10-2018 IPR006380 Sucrose-phosphatase-like, N-terminal R615_05850 40eea3332f450e3e314767960079aa49 334 SUPERFAMILY SSF56931 68 334 5.75E-81 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 PRINTS PR01486 Bacterial phospholipase A1 protein signature 303 323 2.1E-27 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 PRINTS PR01486 Bacterial phospholipase A1 protein signature 246 264 2.1E-27 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 PRINTS PR01486 Bacterial phospholipase A1 protein signature 281 298 2.1E-27 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 PRINTS PR01486 Bacterial phospholipase A1 protein signature 140 156 2.1E-27 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 PRINTS PR01486 Bacterial phospholipase A1 protein signature 163 182 2.1E-27 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 Pfam PF02253 Phospholipase A1 64 330 3.0E-90 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_05850 40eea3332f450e3e314767960079aa49 334 Gene3D G3DSA:2.40.230.10 62 334 3.6E-81 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_14855 8e21ed0bb9ced5dafaa77ca0d7fc64b2 537 Gene3D G3DSA:3.30.70.2700 1 81 2.1E-25 T 12-10-2018 R615_14855 8e21ed0bb9ced5dafaa77ca0d7fc64b2 537 SUPERFAMILY SSF51905 101 529 3.46E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14855 8e21ed0bb9ced5dafaa77ca0d7fc64b2 537 Gene3D G3DSA:3.50.50.60 86 302 4.9E-82 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14855 8e21ed0bb9ced5dafaa77ca0d7fc64b2 537 Gene3D G3DSA:3.50.50.60 472 534 1.4E-14 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14855 8e21ed0bb9ced5dafaa77ca0d7fc64b2 537 PIRSF PIRSF038984 1 535 1.4E-237 T 12-10-2018 IPR028348 FAD dependent protein R615_16725 d878361be95e4a6291c2132d4e6432aa 387 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 48 362 3.9E-138 T 12-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC R615_16725 d878361be95e4a6291c2132d4e6432aa 387 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 350 3.9E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 R615_00595 b7e41077d65e89abe7953aaf8edf4245 422 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 78 293 2.5E-75 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 R615_00595 b7e41077d65e89abe7953aaf8edf4245 422 SUPERFAMILY SSF102405 90 294 9.16E-44 T 12-10-2018 R615_00595 b7e41077d65e89abe7953aaf8edf4245 422 Gene3D G3DSA:3.40.50.450 3 296 4.9E-101 T 12-10-2018 R615_00595 b7e41077d65e89abe7953aaf8edf4245 422 Pfam PF02481 DNA recombination-mediator protein A 82 285 8.2E-77 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 R615_14490 ec3e7ab218e0f3d8469eb8242234bfb7 117 Gene3D G3DSA:3.30.1130.10 1 117 5.5E-38 T 12-10-2018 R615_14490 ec3e7ab218e0f3d8469eb8242234bfb7 117 Pfam PF02152 Dihydroneopterin aldolase 4 112 4.0E-30 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 R615_14490 ec3e7ab218e0f3d8469eb8242234bfb7 117 TIGRFAM TIGR00526 folB_dom: FolB domain 1 115 1.7E-28 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 R615_14490 ec3e7ab218e0f3d8469eb8242234bfb7 117 SMART SM00905 4 114 6.6E-41 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 R615_14490 ec3e7ab218e0f3d8469eb8242234bfb7 117 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 114 1.0E-24 T 12-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 R615_14490 ec3e7ab218e0f3d8469eb8242234bfb7 117 SUPERFAMILY SSF55620 1 114 7.23E-33 T 12-10-2018 R615_04510 6bd95a7cdee07c5f6212b5d2987de335 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 1.3E-29 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04510 6bd95a7cdee07c5f6212b5d2987de335 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.883 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04510 6bd95a7cdee07c5f6212b5d2987de335 83 SUPERFAMILY SSF54565 1 76 3.4E-30 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04510 6bd95a7cdee07c5f6212b5d2987de335 83 Gene3D G3DSA:3.30.1320.10 1 82 8.4E-33 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04510 6bd95a7cdee07c5f6212b5d2987de335 83 Pfam PF00886 Ribosomal protein S16 8 68 1.1E-26 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_07665 60cd0f73f7cfa5805313b7584df6cd96 218 Pfam PF00226 DnaJ domain 170 215 2.9E-10 T 12-10-2018 IPR001623 DnaJ domain R615_07665 60cd0f73f7cfa5805313b7584df6cd96 218 SMART SM00271 165 217 1.5E-6 T 12-10-2018 IPR001623 DnaJ domain R615_07665 60cd0f73f7cfa5805313b7584df6cd96 218 Pfam PF12339 DNA-J related protein 28 156 5.6E-38 T 12-10-2018 IPR021059 DnaJ-related protein, N-terminal R615_07665 60cd0f73f7cfa5805313b7584df6cd96 218 Gene3D G3DSA:1.10.287.110 162 217 5.4E-14 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_07665 60cd0f73f7cfa5805313b7584df6cd96 218 SUPERFAMILY SSF46565 170 214 6.02E-13 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_15245 c09e78b33434b9968ee62aa68414836c 699 Pfam PF03958 Bacterial type II/III secretion system short domain 375 437 1.4E-10 T 12-10-2018 IPR005644 NolW-like R615_15245 c09e78b33434b9968ee62aa68414836c 699 Gene3D G3DSA:3.30.1370.120 346 438 1.9E-23 T 12-10-2018 IPR038591 NolW-like superfamily R615_15245 c09e78b33434b9968ee62aa68414836c 699 Gene3D G3DSA:2.60.40.3500 23 127 1.3E-7 T 12-10-2018 R615_15245 c09e78b33434b9968ee62aa68414836c 699 Pfam PF07660 Secretin and TonB N terminus short domain 301 347 4.4E-8 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 R615_15245 c09e78b33434b9968ee62aa68414836c 699 Gene3D G3DSA:2.60.40.3470 130 262 2.9E-29 T 12-10-2018 R615_15245 c09e78b33434b9968ee62aa68414836c 699 Gene3D G3DSA:3.55.50.30 274 345 3.2E-10 T 12-10-2018 R615_15245 c09e78b33434b9968ee62aa68414836c 699 Pfam PF00263 Bacterial type II and III secretion system protein 538 693 1.5E-48 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 R615_15245 c09e78b33434b9968ee62aa68414836c 699 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 275 693 4.5E-155 T 12-10-2018 IPR013355 Type IV pilus secretin PilQ R615_15245 c09e78b33434b9968ee62aa68414836c 699 SMART SM00965 300 348 2.0E-8 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 R615_15245 c09e78b33434b9968ee62aa68414836c 699 PRINTS PR00811 Bacterial general secretion pathway protein D signature 680 694 4.7E-19 T 12-10-2018 IPR001775 GspD/PilQ family R615_15245 c09e78b33434b9968ee62aa68414836c 699 PRINTS PR00811 Bacterial general secretion pathway protein D signature 534 558 4.7E-19 T 12-10-2018 IPR001775 GspD/PilQ family R615_15245 c09e78b33434b9968ee62aa68414836c 699 PRINTS PR00811 Bacterial general secretion pathway protein D signature 657 675 4.7E-19 T 12-10-2018 IPR001775 GspD/PilQ family R615_15245 c09e78b33434b9968ee62aa68414836c 699 PRINTS PR00811 Bacterial general secretion pathway protein D signature 437 447 4.7E-19 T 12-10-2018 IPR001775 GspD/PilQ family R615_15245 c09e78b33434b9968ee62aa68414836c 699 Pfam PF11741 AMIN domain 41 127 2.5E-9 T 12-10-2018 IPR021731 AMIN domain R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 PIRSF PIRSF006630 2 247 6.8E-76 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 PIRSF PIRSF006630 234 539 2.2E-120 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 Gene3D G3DSA:3.60.110.10 1 266 5.1E-86 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 SUPERFAMILY SSF52402 254 522 1.28E-75 T 12-10-2018 R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 Gene3D G3DSA:3.40.50.620 267 540 3.3E-114 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 538 28.38 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 Pfam PF02540 NAD synthase 265 513 2.1E-71 T 12-10-2018 IPR022310 NAD/GMP synthase R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 12-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 247 2.0E-23 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 SUPERFAMILY SSF56317 4 243 3.66E-58 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_03360 358051805ce8f5ed5a0461220f4c6cb1 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 272 516 3.1E-58 T 12-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 Pfam PF00226 DnaJ domain 5 61 6.1E-17 T 12-10-2018 IPR001623 DnaJ domain R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 Gene3D G3DSA:1.10.287.110 2 72 6.8E-17 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 PRINTS PR00625 DnaJ domain signature 6 24 1.2E-11 T 12-10-2018 IPR001623 DnaJ domain R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 PRINTS PR00625 DnaJ domain signature 24 39 1.2E-11 T 12-10-2018 IPR001623 DnaJ domain R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 PRINTS PR00625 DnaJ domain signature 42 62 1.2E-11 T 12-10-2018 IPR001623 DnaJ domain R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 SUPERFAMILY SSF46565 2 63 1.05E-16 T 12-10-2018 IPR036869 Chaperone J-domain superfamily R615_00425 929f512bcc8cff2d26f9a01b097509a7 124 SMART SM00271 3 62 5.0E-18 T 12-10-2018 IPR001623 DnaJ domain R615_10475 60f811df94f60056590eb277faf376f6 325 SUPERFAMILY SSF161098 105 306 7.19E-12 T 12-10-2018 IPR035906 MetI-like superfamily R615_10475 60f811df94f60056590eb277faf376f6 325 Gene3D G3DSA:1.10.3720.10 106 318 1.9E-15 T 12-10-2018 IPR035906 MetI-like superfamily R615_10475 60f811df94f60056590eb277faf376f6 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 323 3.4E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_15925 849b3f0f37669f5de7d42a16b7ebb0f1 68 Pfam PF01381 Helix-turn-helix 12 63 7.1E-16 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_15925 849b3f0f37669f5de7d42a16b7ebb0f1 68 SMART SM00530 11 66 6.1E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_15925 849b3f0f37669f5de7d42a16b7ebb0f1 68 Gene3D G3DSA:1.10.260.40 1 68 3.7E-21 T 12-10-2018 R615_15925 849b3f0f37669f5de7d42a16b7ebb0f1 68 SUPERFAMILY SSF47413 2 67 2.41E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_09100 8c16973b9f47e04a07309a41489aa0ba 662 Gene3D G3DSA:1.10.760.10 137 226 2.5E-13 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_09100 8c16973b9f47e04a07309a41489aa0ba 662 SUPERFAMILY SSF46626 148 228 4.95E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_09100 8c16973b9f47e04a07309a41489aa0ba 662 Pfam PF03239 Iron permease FTR1 family 352 507 1.3E-16 T 12-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 R615_09100 8c16973b9f47e04a07309a41489aa0ba 662 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 147 224 6.3E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Pfam PF00873 AcrB/AcrD/AcrF family 22 1061 1.4E-153 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:3.30.70.1430 50 846 9.7E-227 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82693 585 700 3.92E-13 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82866 308 508 1.7E-38 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:3.30.70.1320 146 343 9.7E-227 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:1.20.1640.10 24 533 9.7E-227 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:3.30.70.1440 698 910 9.7E-227 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82693 50 144 1.62E-17 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82714 197 277 6.54E-13 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:3.30.2090.10 748 838 9.7E-227 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82693 151 341 2.79E-11 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:3.30.2090.10 192 283 9.7E-227 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 PRINTS PR00702 Acriflavin resistance protein family signature 20 44 4.3E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 PRINTS PR00702 Acriflavin resistance protein family signature 349 372 4.3E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 PRINTS PR00702 Acriflavin resistance protein family signature 48 66 4.3E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 PRINTS PR00702 Acriflavin resistance protein family signature 482 505 4.3E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 PRINTS PR00702 Acriflavin resistance protein family signature 403 427 4.3E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 PRINTS PR00702 Acriflavin resistance protein family signature 457 480 4.3E-26 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82866 835 1068 4.19E-42 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 SUPERFAMILY SSF82714 749 834 1.57E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:1.20.1640.10 534 1060 9.7E-227 T 12-10-2018 R615_10755 fdc3ca259c45fbe6519043175f91018b 1069 Gene3D G3DSA:3.30.70.1430 589 697 9.7E-227 T 12-10-2018 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 SUPERFAMILY SSF117892 56 190 2.62E-42 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 SMART SM00244 25 183 3.0E-64 T 12-10-2018 IPR001107 Band 7 domain R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 Pfam PF01145 SPFH domain / Band 7 family 30 199 1.5E-29 T 12-10-2018 IPR001107 Band 7 domain R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 Pfam PF16200 C-terminal region of band_7 248 310 3.4E-15 T 12-10-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 PRINTS PR00721 Stomatin signature 178 199 2.4E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 PRINTS PR00721 Stomatin signature 159 177 2.4E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 PRINTS PR00721 Stomatin signature 115 132 2.4E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 PRINTS PR00721 Stomatin signature 135 158 2.4E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 PRINTS PR00721 Stomatin signature 80 101 2.4E-29 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_01670 0b45b6962877a97a708e3a7b44c7e873 313 Gene3D G3DSA:3.30.479.30 53 185 7.2E-44 T 12-10-2018 R615_11510 773d362c0e4e70c3605a6e379dd29f4f 163 Gene3D G3DSA:3.40.630.30 1 162 2.7E-41 T 12-10-2018 R615_11510 773d362c0e4e70c3605a6e379dd29f4f 163 Pfam PF13302 Acetyltransferase (GNAT) domain 4 137 5.1E-24 T 12-10-2018 IPR000182 GNAT domain R615_11510 773d362c0e4e70c3605a6e379dd29f4f 163 SUPERFAMILY SSF55729 3 160 2.98E-41 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 2 23 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 515 538 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 341 361 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 432 455 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 269 284 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 180 200 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 479 501 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 91 112 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR00701 60kDa inner membrane protein signature 236 254 7.0E-85 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 369 3.5E-106 T 12-10-2018 IPR028053 Membrane insertase YidC, N-terminal R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 Pfam PF02096 60Kd inner membrane protein 371 549 1.8E-60 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR01900 YidC translocation/secretion protein signature 504 528 1.2E-28 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR01900 YidC translocation/secretion protein signature 356 372 1.2E-28 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 PRINTS PR01900 YidC translocation/secretion protein signature 485 500 1.2E-28 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 Gene3D G3DSA:2.70.98.90 82 350 3.9E-89 T 12-10-2018 IPR038221 YidC, periplasmic domain superfamily R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 551 24.59 T 12-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 Pfam PF14849 YidC periplasmic domain 86 360 7.9E-82 T 12-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain R615_17505 67a5e46121961678d72f4c1c5ce5546b 554 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 370 549 9.7E-72 T 12-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_05180 1d92116b29cfcbd2f0be9127002fc10a 449 Pfam PF02120 Flagellar hook-length control protein FliK 326 406 1.1E-24 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal R615_05180 1d92116b29cfcbd2f0be9127002fc10a 449 Gene3D G3DSA:3.30.750.140 295 416 4.9E-30 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily R615_13205 3c9805b88c8a386d80dde43e18263112 194 SUPERFAMILY SSF53697 2 190 1.13E-56 T 12-10-2018 R615_13205 3c9805b88c8a386d80dde43e18263112 194 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 36.866 T 12-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 R615_13205 3c9805b88c8a386d80dde43e18263112 194 Pfam PF13580 SIS domain 14 144 2.4E-36 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 R615_13205 3c9805b88c8a386d80dde43e18263112 194 Gene3D G3DSA:3.40.50.10490 1 194 2.3E-74 T 12-10-2018 R615_07170 ac7f61c5df48ada4a97e9f0c9eb5f343 632 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 144 598 99.529 T 12-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 R615_07170 ac7f61c5df48ada4a97e9f0c9eb5f343 632 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 144 596 1.9E-214 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 R615_07170 ac7f61c5df48ada4a97e9f0c9eb5f343 632 Pfam PF13667 ThiC-associated domain 25 104 8.1E-28 T 12-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 R615_07170 ac7f61c5df48ada4a97e9f0c9eb5f343 632 Pfam PF01964 Radical SAM ThiC family 146 594 5.0E-198 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 R615_07170 ac7f61c5df48ada4a97e9f0c9eb5f343 632 Gene3D G3DSA:3.20.20.540 217 529 1.9E-152 T 12-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 R615_09350 0b4d97a4b575e885b423406113b6ed84 392 SUPERFAMILY SSF54506 2 182 4.47E-71 T 12-10-2018 R615_09350 0b4d97a4b575e885b423406113b6ed84 392 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 4 392 1.2E-222 T 12-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 R615_09350 0b4d97a4b575e885b423406113b6ed84 392 Gene3D G3DSA:3.10.310.10 11 385 2.2E-146 T 12-10-2018 R615_09350 0b4d97a4b575e885b423406113b6ed84 392 Gene3D G3DSA:3.10.310.10 181 371 2.2E-146 T 12-10-2018 R615_09350 0b4d97a4b575e885b423406113b6ed84 392 SUPERFAMILY SSF54506 186 391 1.8E-73 T 12-10-2018 R615_09350 0b4d97a4b575e885b423406113b6ed84 392 Pfam PF04303 PrpF protein 6 388 7.8E-169 T 12-10-2018 IPR007400 PrpF protein R615_16695 f4bb9a4a1ac9f9abd6d08ef9df5a435e 422 ProSitePatterns PS01219 Ammonium transporters signature. 177 202 - T 12-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 R615_16695 f4bb9a4a1ac9f9abd6d08ef9df5a435e 422 TIGRFAM TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype 10 419 4.0E-206 T 12-10-2018 IPR019879 Ammonium transporter, marine subtype R615_16695 f4bb9a4a1ac9f9abd6d08ef9df5a435e 422 Pfam PF00909 Ammonium Transporter Family 17 416 1.2E-94 T 12-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 R615_16695 f4bb9a4a1ac9f9abd6d08ef9df5a435e 422 SUPERFAMILY SSF111352 10 397 1.44E-99 T 12-10-2018 R615_16695 f4bb9a4a1ac9f9abd6d08ef9df5a435e 422 Gene3D G3DSA:1.10.3430.10 1 422 2.7E-116 T 12-10-2018 IPR029020 Ammonium/urea transporter R615_11855 69944d87215ec07e410089480bbdf4db 348 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 290 332 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_11855 69944d87215ec07e410089480bbdf4db 348 Gene3D G3DSA:1.10.10.60 233 345 4.2E-19 T 12-10-2018 R615_11855 69944d87215ec07e410089480bbdf4db 348 Pfam PF12833 Helix-turn-helix domain 261 337 4.2E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_11855 69944d87215ec07e410089480bbdf4db 348 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 40 208 2.0E-20 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_11855 69944d87215ec07e410089480bbdf4db 348 SUPERFAMILY SSF46689 289 342 6.27E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_11855 69944d87215ec07e410089480bbdf4db 348 SMART SM00342 254 336 1.0E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 SMART SM00448 3 114 1.7E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 Gene3D G3DSA:2.40.50.1020 132 233 9.0E-9 T 12-10-2018 R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 SUPERFAMILY SSF52172 3 121 8.97E-36 T 12-10-2018 IPR011006 CheY-like superfamily R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 Pfam PF04397 LytTr DNA-binding domain 146 238 7.5E-21 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 Gene3D G3DSA:3.40.50.2300 1 124 2.4E-37 T 12-10-2018 R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 SMART SM00850 143 239 4.8E-20 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 R615_17210 37a3e95d1ecb1e201d36f32cb206a2ae 241 Pfam PF00072 Response regulator receiver domain 5 114 1.0E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01625 5cb38abcdbd05c7dce7be7f494e49f93 214 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 5 210 33.471 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 R615_01625 5cb38abcdbd05c7dce7be7f494e49f93 214 Pfam PF00117 Glutamine amidotransferase class-I 8 208 8.8E-18 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_01625 5cb38abcdbd05c7dce7be7f494e49f93 214 Gene3D G3DSA:3.40.50.880 2 213 5.1E-69 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_01625 5cb38abcdbd05c7dce7be7f494e49f93 214 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 7 209 2.4E-62 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 R615_01625 5cb38abcdbd05c7dce7be7f494e49f93 214 SUPERFAMILY SSF52317 4 210 6.45E-52 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_01625 5cb38abcdbd05c7dce7be7f494e49f93 214 PIRSF PIRSF000495 4 213 2.9E-65 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 R615_04930 f0a6f96e88416952ab5b89cf639d6379 101 Gene3D G3DSA:3.30.460.10 4 101 9.6E-19 T 12-10-2018 R615_04930 f0a6f96e88416952ab5b89cf639d6379 101 SUPERFAMILY SSF81301 14 97 3.51E-17 T 12-10-2018 R615_04930 f0a6f96e88416952ab5b89cf639d6379 101 Pfam PF01909 Nucleotidyltransferase domain 15 86 3.3E-10 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 R615_10730 68dbfbffd42e6ddd11b907f9e6e3a652 83 Pfam PF03692 Putative zinc- or iron-chelating domain 2 60 1.0E-6 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein R615_00780 feb08780b4faf4b1f041a3bcf3b21e98 245 Pfam PF00588 SpoU rRNA Methylase family 20 158 8.3E-33 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 R615_00780 feb08780b4faf4b1f041a3bcf3b21e98 245 SUPERFAMILY SSF75217 4 187 6.15E-47 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_00780 feb08780b4faf4b1f041a3bcf3b21e98 245 Pfam PF12105 SpoU, rRNA methylase, C-terminal 164 215 1.2E-21 T 12-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 R615_00780 feb08780b4faf4b1f041a3bcf3b21e98 245 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 195 35.55 T 12-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 R615_00780 feb08780b4faf4b1f041a3bcf3b21e98 245 Gene3D G3DSA:3.40.1280.10 1 201 3.2E-62 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 Gene3D G3DSA:1.10.3210.10 312 502 1.3E-60 T 12-10-2018 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 Gene3D G3DSA:3.30.420.150 118 297 8.0E-88 T 12-10-2018 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 SUPERFAMILY SSF53067 139 310 1.11E-44 T 12-10-2018 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 Pfam PF02541 Ppx/GppA phosphatase family 27 309 4.6E-79 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 PIRSF PIRSF001267 4 502 5.3E-193 T 12-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 Gene3D G3DSA:3.30.420.40 15 304 8.0E-88 T 12-10-2018 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 14 308 1.2E-97 T 12-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 SUPERFAMILY SSF53067 14 134 4.78E-35 T 12-10-2018 R615_16660 1eff3de309ab241f27e4305fbb4b924c 502 SUPERFAMILY SSF109604 315 501 2.67E-49 T 12-10-2018 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Gene3D G3DSA:1.10.287.1150 87 171 2.5E-25 T 12-10-2018 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 941 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Gene3D G3DSA:3.40.50.12470 562 808 8.3E-166 T 12-10-2018 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 796 941 8.6E-51 T 12-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Pfam PF02779 Transketolase, pyrimidine binding domain 598 793 4.7E-64 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Pfam PF00676 Dehydrogenase E1 component 228 526 7.7E-55 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 6.5E-16 T 12-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 SMART SM00861 599 792 1.5E-56 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Gene3D G3DSA:3.40.50.11610 729 938 8.3E-166 T 12-10-2018 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 SUPERFAMILY SSF52518 581 799 1.08E-50 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 PIRSF PIRSF000157 1 943 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 Gene3D G3DSA:3.40.50.970 172 534 1.2E-147 T 12-10-2018 R615_10000 1a96b51da1935f4ca992a4a318ad3eb0 945 SUPERFAMILY SSF52518 125 550 5.89E-84 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold R615_05505 1b9d7f526bdbd8c75ac6d1750c0c83d9 164 Pfam PF03938 Outer membrane protein (OmpH-like) 7 161 7.4E-25 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 R615_05505 1b9d7f526bdbd8c75ac6d1750c0c83d9 164 SUPERFAMILY SSF111384 18 162 4.58E-26 T 12-10-2018 R615_05505 1b9d7f526bdbd8c75ac6d1750c0c83d9 164 Gene3D G3DSA:3.30.910.20 13 164 3.6E-26 T 12-10-2018 IPR024930 Skp domain superfamily R615_05505 1b9d7f526bdbd8c75ac6d1750c0c83d9 164 SMART SM00935 8 162 1.5E-32 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 R615_07165 89272d86e5027f247b8aff43b88140a0 149 Pfam PF03061 Thioesterase superfamily 65 136 2.0E-9 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_07165 89272d86e5027f247b8aff43b88140a0 149 Gene3D G3DSA:3.10.129.10 1 149 9.5E-53 T 12-10-2018 R615_07165 89272d86e5027f247b8aff43b88140a0 149 SUPERFAMILY SSF54637 8 147 1.07E-20 T 12-10-2018 IPR029069 HotDog domain superfamily R615_05485 0ec01a05d9fbbf2d2314d8a789840252 281 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 233 259 - T 12-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 R615_05485 0ec01a05d9fbbf2d2314d8a789840252 281 Pfam PF01148 Cytidylyltransferase family 3 272 6.3E-61 T 12-10-2018 R615_03175 dd2571d951defc8d4d965fd6dc458dbb 113 SUPERFAMILY SSF158452 5 109 3.01E-26 T 12-10-2018 IPR036814 YqcC-like superfamily R615_03175 dd2571d951defc8d4d965fd6dc458dbb 113 Pfam PF04287 tRNA pseudouridine synthase C 9 107 4.6E-29 T 12-10-2018 IPR023376 YqcC-like domain R615_03175 dd2571d951defc8d4d965fd6dc458dbb 113 Gene3D G3DSA:1.20.1440.40 2 109 5.4E-26 T 12-10-2018 IPR036814 YqcC-like superfamily R615_13445 c07d61eec3d1c36441da068ffb695541 151 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 151 53.411 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 R615_13445 c07d61eec3d1c36441da068ffb695541 151 Gene3D G3DSA:2.40.330.20 1 148 8.1E-43 T 12-10-2018 IPR038619 MraZ superfamily R615_13445 c07d61eec3d1c36441da068ffb695541 151 Pfam PF02381 MraZ protein, putative antitoxin-like 78 127 3.4E-16 T 12-10-2018 IPR020603 MraZ domain R615_13445 c07d61eec3d1c36441da068ffb695541 151 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 1.2E-16 T 12-10-2018 IPR020603 MraZ domain R615_13445 c07d61eec3d1c36441da068ffb695541 151 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 143 2.8E-47 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 R615_13445 c07d61eec3d1c36441da068ffb695541 151 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 126 1.0E-43 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 R615_13445 c07d61eec3d1c36441da068ffb695541 151 SUPERFAMILY SSF89447 1 138 1.35E-46 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily R615_16350 5823143f52299702d97d4386890f3a92 187 Gene3D G3DSA:3.30.160.70 10 98 1.1E-17 T 12-10-2018 R615_16350 5823143f52299702d97d4386890f3a92 187 SUPERFAMILY SSF46767 99 180 2.75E-30 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 R615_16350 5823143f52299702d97d4386890f3a92 187 SUPERFAMILY SSF53155 19 92 1.96E-12 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 R615_16350 5823143f52299702d97d4386890f3a92 187 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 100 179 3.7E-36 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 R615_16350 5823143f52299702d97d4386890f3a92 187 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 150 156 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 R615_16350 5823143f52299702d97d4386890f3a92 187 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 101 180 4.7E-31 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 R615_16350 5823143f52299702d97d4386890f3a92 187 Gene3D G3DSA:1.10.10.10 99 184 2.0E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00980 6500258ee48ac8ab73a54592a580b05e 85 Pfam PF12838 4Fe-4S dicluster domain 9 57 4.5E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_00980 6500258ee48ac8ab73a54592a580b05e 85 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_00980 6500258ee48ac8ab73a54592a580b05e 85 SUPERFAMILY SSF54862 3 76 4.83E-19 T 12-10-2018 R615_00980 6500258ee48ac8ab73a54592a580b05e 85 Gene3D G3DSA:3.30.70.20 2 81 1.4E-32 T 12-10-2018 R615_14245 8432944785bb9209363f8aef07891dd7 395 Gene3D G3DSA:3.40.47.10 8 278 1.0E-133 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_14245 8432944785bb9209363f8aef07891dd7 395 SUPERFAMILY SSF53901 7 271 7.77E-75 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_14245 8432944785bb9209363f8aef07891dd7 395 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 R615_14245 8432944785bb9209363f8aef07891dd7 395 SUPERFAMILY SSF53901 273 394 1.4E-37 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_14245 8432944785bb9209363f8aef07891dd7 395 Pfam PF00108 Thiolase, N-terminal domain 7 265 1.8E-83 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 R615_14245 8432944785bb9209363f8aef07891dd7 395 Gene3D G3DSA:3.40.47.10 129 392 1.0E-133 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_14245 8432944785bb9209363f8aef07891dd7 395 Pfam PF02803 Thiolase, C-terminal domain 273 393 1.7E-40 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 R615_14245 8432944785bb9209363f8aef07891dd7 395 PIRSF PIRSF000429 1 395 5.8E-109 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_14245 8432944785bb9209363f8aef07891dd7 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 393 1.2E-121 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_04270 7670b4ee2ede5ab2c4d17d87d1e6e667 417 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 53 412 2.8E-163 T 12-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like R615_04270 7670b4ee2ede5ab2c4d17d87d1e6e667 417 Pfam PF13433 Periplasmic binding protein domain 54 414 3.6E-132 T 12-10-2018 R615_04270 7670b4ee2ede5ab2c4d17d87d1e6e667 417 Gene3D G3DSA:3.40.50.2300 168 404 1.4E-131 T 12-10-2018 R615_04270 7670b4ee2ede5ab2c4d17d87d1e6e667 417 SUPERFAMILY SSF53822 52 412 2.49E-94 T 12-10-2018 IPR028082 Periplasmic binding protein-like I R615_04270 7670b4ee2ede5ab2c4d17d87d1e6e667 417 Gene3D G3DSA:3.40.50.2300 55 384 1.4E-131 T 12-10-2018 R615_08770 fb30163784a06109f788f7b4baca88b1 295 Gene3D G3DSA:3.20.20.70 16 206 1.6E-15 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_08770 fb30163784a06109f788f7b4baca88b1 295 SMART SM00729 17 243 4.7E-23 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_08770 fb30163784a06109f788f7b4baca88b1 295 Pfam PF04055 Radical SAM superfamily 22 176 1.5E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_08770 fb30163784a06109f788f7b4baca88b1 295 SUPERFAMILY SSF102114 4 243 5.23E-32 T 12-10-2018 R615_05925 e78736a71d7e2bb5556937eef3afc969 407 Gene3D G3DSA:3.90.1150.10 9 398 1.5E-171 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_05925 e78736a71d7e2bb5556937eef3afc969 407 SUPERFAMILY SSF53383 6 402 9.93E-122 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_05925 e78736a71d7e2bb5556937eef3afc969 407 Pfam PF00266 Aminotransferase class-V 26 395 2.9E-146 T 12-10-2018 IPR000192 Aminotransferase class V domain R615_05925 e78736a71d7e2bb5556937eef3afc969 407 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 8 405 7.4E-174 T 12-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 R615_05925 e78736a71d7e2bb5556937eef3afc969 407 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 218 237 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site R615_05925 e78736a71d7e2bb5556937eef3afc969 407 PIRSF PIRSF005572 23 403 7.0E-49 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 R615_05925 e78736a71d7e2bb5556937eef3afc969 407 Gene3D G3DSA:3.40.640.10 37 297 1.5E-171 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_01740 d97f80130bf901d892f8907b7fec4937 379 Pfam PF06996 Type VI secretion, TssG 19 349 1.8E-83 T 12-10-2018 IPR010732 Type VI secretion, TssG-like R615_01740 d97f80130bf901d892f8907b7fec4937 379 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 350 1.5E-72 T 12-10-2018 IPR010732 Type VI secretion, TssG-like R615_03905 8ee947078417dd7f8c318f910b6a063c 497 Pfam PF00209 Sodium:neurotransmitter symporter family 158 365 2.8E-18 T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 Pfam PF00209 Sodium:neurotransmitter symporter family 11 128 1.9E-29 T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 SUPERFAMILY SSF161070 10 378 2.62E-113 T 12-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 33 47 - T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 17 38 2.1E-19 T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 46 65 2.1E-19 T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 260 280 2.1E-19 T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 477 497 2.1E-19 T 12-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 R615_03905 8ee947078417dd7f8c318f910b6a063c 497 SUPERFAMILY SSF161070 422 496 6.67E-13 T 12-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 R615_14560 919f9c944e3a654c6de79fa5f05ea6f8 292 Pfam PF10118 Predicted metal-dependent hydrolase 15 260 4.0E-73 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_14560 919f9c944e3a654c6de79fa5f05ea6f8 292 PIRSF PIRSF007580 2 280 5.0E-67 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_00530 642906595dee0cea44a185cde93ebdae 237 Gene3D G3DSA:1.10.10.10 1 63 1.8E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00530 642906595dee0cea44a185cde93ebdae 237 SUPERFAMILY SSF46785 3 61 2.47E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_00530 642906595dee0cea44a185cde93ebdae 237 Pfam PF13280 WYL domain 151 233 2.3E-15 T 12-10-2018 IPR026881 WYL domain R615_00530 642906595dee0cea44a185cde93ebdae 237 Pfam PF08279 HTH domain 6 57 1.4E-15 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 SUPERFAMILY SSF53383 9 415 4.44E-97 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 Gene3D G3DSA:3.90.1150.10 6 412 1.5E-102 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 Pfam PF00202 Aminotransferase class-III 18 414 8.3E-75 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 Gene3D G3DSA:3.40.640.10 54 322 1.5E-102 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 2 421 5.1E-127 T 12-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 PIRSF PIRSF000521 15 124 0.17 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_09905 aec5a0d3ffeedc69c1c7f593f6e1d982 424 PIRSF PIRSF000521 109 422 9.0E-30 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_01130 0953a24724553644e5c16fe451dbcfe5 238 Pfam PF00005 ABC transporter 32 178 3.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_01130 0953a24724553644e5c16fe451dbcfe5 238 SUPERFAMILY SSF52540 13 236 6.34E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01130 0953a24724553644e5c16fe451dbcfe5 238 SMART SM00382 41 227 1.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_01130 0953a24724553644e5c16fe451dbcfe5 238 Gene3D G3DSA:3.40.50.300 10 238 1.6E-68 T 12-10-2018 R615_01130 0953a24724553644e5c16fe451dbcfe5 238 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_15195 de0adc0c32ee4d6fa095e7156f524c8a 502 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 7.0E-15 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_15195 de0adc0c32ee4d6fa095e7156f524c8a 502 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 7.0E-15 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_15195 de0adc0c32ee4d6fa095e7156f524c8a 502 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 7.0E-15 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_15195 de0adc0c32ee4d6fa095e7156f524c8a 502 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 7.0E-15 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_15195 de0adc0c32ee4d6fa095e7156f524c8a 502 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 327 346 7.0E-15 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_15195 de0adc0c32ee4d6fa095e7156f524c8a 502 Pfam PF00361 Proton-conducting membrane transporter 128 414 1.2E-37 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 Pfam PF01706 FliG C-terminal domain 226 333 3.3E-40 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal R615_05105 7ff833c7e33128faea7c60b073ff142f 341 SUPERFAMILY SSF48029 123 334 3.01E-67 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical R615_05105 7ff833c7e33128faea7c60b073ff142f 341 SUPERFAMILY SSF48029 16 124 1.7E-23 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical R615_05105 7ff833c7e33128faea7c60b073ff142f 341 Pfam PF14841 FliG middle domain 124 195 1.7E-25 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain R615_05105 7ff833c7e33128faea7c60b073ff142f 341 Gene3D G3DSA:1.10.220.30 204 341 2.3E-42 T 12-10-2018 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 Gene3D G3DSA:1.10.220.30 99 200 1.3E-25 T 12-10-2018 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PIRSF PIRSF003161 8 341 2.4E-114 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 8 338 7.6E-100 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 43 69 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 281 307 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 257 277 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 235 255 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 14 30 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 123 146 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 204 229 1.5E-62 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 R615_05105 7ff833c7e33128faea7c60b073ff142f 341 Pfam PF14842 FliG N-terminal domain 14 114 6.0E-33 T 12-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain R615_05105 7ff833c7e33128faea7c60b073ff142f 341 Gene3D G3DSA:1.10.220.30 9 93 2.3E-21 T 12-10-2018 R615_15965 6ffa4ee9c5a3c712b68e441912629c13 191 SMART SM00867 24 189 1.5E-70 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like R615_15965 6ffa4ee9c5a3c712b68e441912629c13 191 Pfam PF04264 YceI-like domain 25 187 2.3E-39 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like R615_15965 6ffa4ee9c5a3c712b68e441912629c13 191 SUPERFAMILY SSF101874 22 191 2.49E-55 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily R615_15965 6ffa4ee9c5a3c712b68e441912629c13 191 Gene3D G3DSA:2.40.128.110 23 191 8.7E-54 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 Gene3D G3DSA:3.90.650.10 190 364 2.5E-71 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 SUPERFAMILY SSF55326 26 189 4.34E-53 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 26 363 47.258 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 Pfam PF02769 AIR synthase related protein, C-terminal domain 196 358 1.3E-37 T 12-10-2018 IPR010918 PurM-like, C-terminal domain R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 Gene3D G3DSA:3.30.1330.10 25 189 2.6E-67 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 SUPERFAMILY SSF56042 190 357 2.54E-61 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 Pfam PF00586 AIR synthase related protein, N-terminal domain 79 182 1.5E-14 T 12-10-2018 IPR016188 PurM-like, N-terminal domain R615_06400 bc1734d5a4af2f28abac595eb2d169eb 368 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 26 353 4.7E-146 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 R615_03205 c33da99bbec2509a15f2d52bb091306f 90 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 3 90 20.326 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 R615_03205 c33da99bbec2509a15f2d52bb091306f 90 Gene3D G3DSA:3.30.70.260 3 90 1.8E-24 T 12-10-2018 R615_03205 c33da99bbec2509a15f2d52bb091306f 90 Pfam PF04359 Protein of unknown function (DUF493) 7 90 4.4E-24 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 R615_03205 c33da99bbec2509a15f2d52bb091306f 90 SUPERFAMILY SSF117991 3 90 3.79E-22 T 12-10-2018 IPR027471 YbeD-like domain superfamily R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 Gene3D G3DSA:1.10.40.60 214 299 2.9E-54 T 12-10-2018 IPR038072 GspK, central domain superfamily R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 PIRSF PIRSF002786 15 343 1.2E-60 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 Gene3D G3DSA:3.30.1300.30 58 324 2.9E-54 T 12-10-2018 R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 SUPERFAMILY SSF158544 214 263 4.97E-6 T 12-10-2018 IPR038072 GspK, central domain superfamily R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 Pfam PF03934 Type II secretion system (T2SS), protein K 45 326 6.0E-66 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 Gene3D G3DSA:1.10.40.60 114 213 2.9E-54 T 12-10-2018 IPR038072 GspK, central domain superfamily R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 SUPERFAMILY SSF158544 116 211 9.15E-16 T 12-10-2018 IPR038072 GspK, central domain superfamily R615_08835 c9fc6660cdb6c7a82433069ebad33138 356 SUPERFAMILY SSF54523 52 327 3.77E-14 T 12-10-2018 R615_11385 9626ff82ff5a8c71069cc1d021e71a38 232 Gene3D G3DSA:3.30.1600.10 19 152 4.2E-81 T 12-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily R615_11385 9626ff82ff5a8c71069cc1d021e71a38 232 Gene3D G3DSA:3.40.50.1220 5 218 4.2E-81 T 12-10-2018 R615_11385 9626ff82ff5a8c71069cc1d021e71a38 232 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 3 230 56.301 T 12-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 R615_11385 9626ff82ff5a8c71069cc1d021e71a38 232 SUPERFAMILY SSF52467 2 228 1.66E-73 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily R615_11385 9626ff82ff5a8c71069cc1d021e71a38 232 Pfam PF02146 Sir2 family 10 180 4.8E-47 T 12-10-2018 IPR003000 Sirtuin family GO:0070403 R615_07375 8f7df0f312184e96f17f47735fb4010e 495 Pfam PF17482 Phage tail sheath C-terminal domain 384 488 9.8E-11 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain R615_07375 8f7df0f312184e96f17f47735fb4010e 495 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 290 380 4.3E-9 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain R615_10720 3611ef91621c634edb34d8adebccaad4 187 SUPERFAMILY SSF55811 2 160 3.52E-40 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_10720 3611ef91621c634edb34d8adebccaad4 187 Gene3D G3DSA:2.20.70.10 1 35 8.3E-14 T 12-10-2018 R615_10720 3611ef91621c634edb34d8adebccaad4 187 PRINTS PR00502 NUDIX hydrolase family signature 65 79 8.9E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_10720 3611ef91621c634edb34d8adebccaad4 187 PRINTS PR00502 NUDIX hydrolase family signature 79 94 8.9E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_10720 3611ef91621c634edb34d8adebccaad4 187 Gene3D G3DSA:3.90.79.10 36 176 7.8E-39 T 12-10-2018 R615_10720 3611ef91621c634edb34d8adebccaad4 187 Pfam PF14803 Nudix N-terminal 2 34 1.4E-14 T 12-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 R615_10720 3611ef91621c634edb34d8adebccaad4 187 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_10720 3611ef91621c634edb34d8adebccaad4 187 Pfam PF00293 NUDIX domain 40 143 7.6E-15 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_10380 771f6337aa9b6c7b7898ceb073e06fbd 57 SUPERFAMILY SSF53955 2 54 1.04E-10 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_10380 771f6337aa9b6c7b7898ceb073e06fbd 57 Gene3D G3DSA:1.10.530.10 1 54 1.0E-7 T 12-10-2018 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 SUPERFAMILY SSF68923 2 195 1.64E-72 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 Gene3D G3DSA:2.170.8.10 23 312 3.8E-202 T 12-10-2018 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 1 510 50.391 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 2 509 4.0E-188 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 Pfam PF01293 Phosphoenolpyruvate carboxykinase 3 464 3.9E-195 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 Gene3D G3DSA:3.40.449.10 13 196 3.8E-202 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 Gene3D G3DSA:3.90.228.20 197 497 3.8E-202 T 12-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 SUPERFAMILY SSF53795 196 509 4.76E-126 T 12-10-2018 R615_17020 2804638186d2134bd7365c396dc4a8b2 511 PIRSF PIRSF006294 1 510 1.4E-209 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 R615_15695 7c64c28f97e2402013902cfc82cf5d8c 926 SUPERFAMILY SSF56219 472 811 8.06E-30 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_15695 7c64c28f97e2402013902cfc82cf5d8c 926 Gene3D G3DSA:3.60.10.10 512 808 3.6E-31 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_15695 7c64c28f97e2402013902cfc82cf5d8c 926 Gene3D G3DSA:2.60.40.10 810 905 6.8E-7 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_06015 167188922edb62454957eee72c7377f6 222 Gene3D G3DSA:1.20.1050.10 84 212 2.7E-27 T 12-10-2018 R615_06015 167188922edb62454957eee72c7377f6 222 SUPERFAMILY SSF47616 90 220 1.77E-21 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_06015 167188922edb62454957eee72c7377f6 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 73 4.3E-17 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_06015 167188922edb62454957eee72c7377f6 222 Pfam PF00043 Glutathione S-transferase, C-terminal domain 121 204 3.6E-10 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal R615_06015 167188922edb62454957eee72c7377f6 222 Gene3D G3DSA:3.40.30.10 1 83 3.5E-36 T 12-10-2018 R615_06015 167188922edb62454957eee72c7377f6 222 SUPERFAMILY SSF52833 1 78 1.1E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_12605 f8dd344d3d8a8a4a1fc484192e0e7973 259 SUPERFAMILY SSF52096 2 258 1.83E-61 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_12605 f8dd344d3d8a8a4a1fc484192e0e7973 259 Gene3D G3DSA:1.10.12.10 202 259 4.1E-15 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal R615_12605 f8dd344d3d8a8a4a1fc484192e0e7973 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 258 1.5E-39 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 R615_12605 f8dd344d3d8a8a4a1fc484192e0e7973 259 ProSitePatterns PS01287 RNA 3'-terminal phosphate cyclase signature. 136 146 - T 12-10-2018 IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site R615_12605 f8dd344d3d8a8a4a1fc484192e0e7973 259 Gene3D G3DSA:3.90.226.10 1 200 1.2E-55 T 12-10-2018 R615_11990 b2789d6909e80f09183918596512f1e0 649 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 644 0.0 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 R615_11990 b2789d6909e80f09183918596512f1e0 649 ProSitePatterns PS00455 Putative AMP-binding domain signature. 262 273 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_11990 b2789d6909e80f09183918596512f1e0 649 Gene3D G3DSA:3.40.50.12780 51 516 6.8E-106 T 12-10-2018 R615_11990 b2789d6909e80f09183918596512f1e0 649 Gene3D G3DSA:3.30.300.30 519 648 2.2E-30 T 12-10-2018 R615_11990 b2789d6909e80f09183918596512f1e0 649 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 82 6.2E-20 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 R615_11990 b2789d6909e80f09183918596512f1e0 649 SUPERFAMILY SSF56801 14 644 7.59E-186 T 12-10-2018 R615_11990 b2789d6909e80f09183918596512f1e0 649 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 646 52.825 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 R615_11990 b2789d6909e80f09183918596512f1e0 649 Pfam PF13193 AMP-binding enzyme C-terminal domain 532 610 9.6E-25 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_11990 b2789d6909e80f09183918596512f1e0 649 Pfam PF00501 AMP-binding enzyme 84 523 1.5E-91 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_09370 318c8e1e11de310288abbe5ffd957ab9 296 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 5 292 48.905 T 12-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 R615_09370 318c8e1e11de310288abbe5ffd957ab9 296 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 255 5.8E-50 T 12-10-2018 R615_09370 318c8e1e11de310288abbe5ffd957ab9 296 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 8 291 1.8E-128 T 12-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 R615_09370 318c8e1e11de310288abbe5ffd957ab9 296 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 R615_09370 318c8e1e11de310288abbe5ffd957ab9 296 Gene3D G3DSA:3.20.20.60 5 296 6.0E-104 T 12-10-2018 R615_09370 318c8e1e11de310288abbe5ffd957ab9 296 SUPERFAMILY SSF51621 7 289 4.93E-99 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 R615_08665 92b7422967a9b11ca8827b141cd0723a 215 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 17 212 1.1E-25 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 R615_08665 92b7422967a9b11ca8827b141cd0723a 215 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 39 201 2.9E-46 T 12-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like R615_08665 92b7422967a9b11ca8827b141cd0723a 215 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 11 211 26.996 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 R615_08665 92b7422967a9b11ca8827b141cd0723a 215 Gene3D G3DSA:2.50.20.10 31 213 1.1E-52 T 12-10-2018 R615_08665 92b7422967a9b11ca8827b141cd0723a 215 SUPERFAMILY SSF89392 30 211 2.86E-49 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 PIRSF PIRSF001356 1 263 1.5E-140 T 12-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 263 164.151 T 12-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 Pfam PF02675 S-adenosylmethionine decarboxylase 39 170 3.5E-32 T 12-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 SUPERFAMILY SSF56276 42 175 4.71E-25 T 12-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 4 262 5.3E-144 T 12-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 Gene3D G3DSA:3.30.360.110 36 85 4.8E-5 T 12-10-2018 R615_14135 1c6566f5824588fe00a82ec3ca5115ea 263 Gene3D G3DSA:3.60.90.10 96 185 3.0E-7 T 12-10-2018 R615_02990 16387b8d06b8c6804beee0b77408e549 260 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 90 9.7E-16 T 12-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 R615_02990 16387b8d06b8c6804beee0b77408e549 260 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 260 22.269 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 R615_02990 16387b8d06b8c6804beee0b77408e549 260 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 160 257 6.8E-31 T 12-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 R615_02990 16387b8d06b8c6804beee0b77408e549 260 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 5 259 2.2E-55 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 R615_02990 16387b8d06b8c6804beee0b77408e549 260 SUPERFAMILY SSF63848 157 259 2.88E-30 T 12-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 R615_02990 16387b8d06b8c6804beee0b77408e549 260 Gene3D G3DSA:3.30.750.120 1 115 7.3E-20 T 12-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily R615_02990 16387b8d06b8c6804beee0b77408e549 260 Gene3D G3DSA:2.160.20.70 140 260 9.8E-32 T 12-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 R615_17085 59dc2c776331d39f324077641edb0847 293 SUPERFAMILY SSF53474 13 291 1.65E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_17085 59dc2c776331d39f324077641edb0847 293 Pfam PF00561 alpha/beta hydrolase fold 39 142 6.1E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_17085 59dc2c776331d39f324077641edb0847 293 Gene3D G3DSA:3.40.50.1820 1 291 8.8E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_17085 59dc2c776331d39f324077641edb0847 293 PRINTS PR00412 Epoxide hydrolase signature 45 63 8.7E-10 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_17085 59dc2c776331d39f324077641edb0847 293 PRINTS PR00412 Epoxide hydrolase signature 109 122 8.7E-10 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_17085 59dc2c776331d39f324077641edb0847 293 PRINTS PR00412 Epoxide hydrolase signature 267 289 8.7E-10 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 R615_10580 e48381bd97cb93c4744026b0f19fb794 205 Pfam PF00665 Integrase core domain 38 152 3.1E-30 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 R615_10580 e48381bd97cb93c4744026b0f19fb794 205 SUPERFAMILY SSF53098 31 194 1.21E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_10580 e48381bd97cb93c4744026b0f19fb794 205 Gene3D G3DSA:3.30.420.10 36 199 5.7E-14 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_07140 b9c343e812cf648a8804b80a312741fd 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 202 3.5E-38 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_07140 b9c343e812cf648a8804b80a312741fd 337 Pfam PF12833 Helix-turn-helix domain 254 330 6.0E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07140 b9c343e812cf648a8804b80a312741fd 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 1.4E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_07140 b9c343e812cf648a8804b80a312741fd 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 1.4E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_07140 b9c343e812cf648a8804b80a312741fd 337 Gene3D G3DSA:1.10.10.60 227 337 1.1E-21 T 12-10-2018 R615_07140 b9c343e812cf648a8804b80a312741fd 337 SMART SM00342 246 329 2.6E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07140 b9c343e812cf648a8804b80a312741fd 337 SUPERFAMILY SSF46689 283 332 2.33E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_10955 58aafcdd2e453659399474d78c8d1582 302 SUPERFAMILY SSF82866 111 280 4.97E-36 T 12-10-2018 R615_10955 58aafcdd2e453659399474d78c8d1582 302 PRINTS PR01755 Bacterial translocase SecF protein signature 31 46 5.8E-30 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial R615_10955 58aafcdd2e453659399474d78c8d1582 302 PRINTS PR01755 Bacterial translocase SecF protein signature 224 239 5.8E-30 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial R615_10955 58aafcdd2e453659399474d78c8d1582 302 PRINTS PR01755 Bacterial translocase SecF protein signature 144 158 5.8E-30 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial R615_10955 58aafcdd2e453659399474d78c8d1582 302 PRINTS PR01755 Bacterial translocase SecF protein signature 192 210 5.8E-30 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial R615_10955 58aafcdd2e453659399474d78c8d1582 302 Pfam PF07549 SecD/SecF GG Motif 27 53 6.8E-12 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site R615_10955 58aafcdd2e453659399474d78c8d1582 302 Pfam PF02355 Protein export membrane protein 106 283 2.3E-64 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial R615_10955 58aafcdd2e453659399474d78c8d1582 302 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 32 276 2.7E-76 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 R615_10955 58aafcdd2e453659399474d78c8d1582 302 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 4 287 28.227 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 R615_10955 58aafcdd2e453659399474d78c8d1582 302 Gene3D G3DSA:1.20.1640.10 96 288 3.0E-11 T 12-10-2018 R615_10955 58aafcdd2e453659399474d78c8d1582 302 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 95 273 8.3E-53 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial R615_00405 5f0cdd9efdadf602bf5776d1676b0bb8 94 Pfam PF11191 Protein of unknown function (DUF2782) 24 94 1.5E-22 T 12-10-2018 IPR021357 Protein of unknown function DUF2782 R615_00405 5f0cdd9efdadf602bf5776d1676b0bb8 94 Gene3D G3DSA:2.20.130.30 22 94 3.7E-27 T 12-10-2018 R615_02070 86b17fd6c296604421b9c6c808a44752 190 Pfam PF02545 Maf-like protein 2 181 1.7E-59 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_02070 86b17fd6c296604421b9c6c808a44752 190 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 180 2.3E-62 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_02070 86b17fd6c296604421b9c6c808a44752 190 Hamap MF_00528 Septum formation protein Maf [maf]. 1 186 34.753 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_02070 86b17fd6c296604421b9c6c808a44752 190 Gene3D G3DSA:3.90.950.10 1 186 1.6E-71 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like R615_02070 86b17fd6c296604421b9c6c808a44752 190 PIRSF PIRSF006305 1 188 5.0E-59 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_02070 86b17fd6c296604421b9c6c808a44752 190 SUPERFAMILY SSF52972 1 181 5.36E-64 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like R615_16910 dbe5efe6aa8e883bba82e2613fc9fc53 104 Gene3D G3DSA:1.20.5.50 54 101 3.3E-11 T 12-10-2018 R615_16910 dbe5efe6aa8e883bba82e2613fc9fc53 104 Pfam PF05164 Cell division protein ZapA 10 91 2.7E-18 T 12-10-2018 IPR007838 Cell division protein ZapA-like R615_16910 dbe5efe6aa8e883bba82e2613fc9fc53 104 Gene3D G3DSA:1.10.20.30 3 53 1.3E-15 T 12-10-2018 R615_16910 dbe5efe6aa8e883bba82e2613fc9fc53 104 SUPERFAMILY SSF102829 9 98 1.03E-19 T 12-10-2018 IPR036192 Cell division protein ZapA-like superfamily R615_14555 1f1694c6f286a9c71e7a2a1d889a1c24 543 Gene3D G3DSA:3.30.300.310 435 538 3.1E-27 T 12-10-2018 R615_14555 1f1694c6f286a9c71e7a2a1d889a1c24 543 SUPERFAMILY SSF56801 5 537 3.27E-129 T 12-10-2018 R615_14555 1f1694c6f286a9c71e7a2a1d889a1c24 543 Pfam PF00501 AMP-binding enzyme 19 439 7.6E-86 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_14555 1f1694c6f286a9c71e7a2a1d889a1c24 543 Gene3D G3DSA:3.40.50.12780 2 434 4.7E-116 T 12-10-2018 R615_14555 1f1694c6f286a9c71e7a2a1d889a1c24 543 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_14555 1f1694c6f286a9c71e7a2a1d889a1c24 543 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 523 3.1E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_11840 380155e97b3836ad636943e09eb729de 292 Pfam PF01575 MaoC like domain 193 268 8.5E-16 T 12-10-2018 IPR002539 MaoC-like dehydratase domain R615_11840 380155e97b3836ad636943e09eb729de 292 SUPERFAMILY SSF54637 48 160 9.82E-7 T 12-10-2018 IPR029069 HotDog domain superfamily R615_11840 380155e97b3836ad636943e09eb729de 292 Gene3D G3DSA:3.10.129.10 31 292 2.2E-72 T 12-10-2018 R615_11840 380155e97b3836ad636943e09eb729de 292 SUPERFAMILY SSF54637 184 289 4.71E-21 T 12-10-2018 IPR029069 HotDog domain superfamily R615_11840 380155e97b3836ad636943e09eb729de 292 PRINTS PR01483 Fatty acid synthase signature 211 232 1.8E-5 T 12-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 R615_11840 380155e97b3836ad636943e09eb729de 292 PRINTS PR01483 Fatty acid synthase signature 189 211 1.8E-5 T 12-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 SMART SM00138 18 283 3.7E-66 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 PRINTS PR00996 Glutamate methyltransferase family signature 80 92 8.5E-30 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 PRINTS PR00996 Glutamate methyltransferase family signature 154 170 8.5E-30 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 PRINTS PR00996 Glutamate methyltransferase family signature 120 140 8.5E-30 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 PRINTS PR00996 Glutamate methyltransferase family signature 40 53 8.5E-30 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 PRINTS PR00996 Glutamate methyltransferase family signature 242 265 8.5E-30 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 PRINTS PR00996 Glutamate methyltransferase family signature 223 237 8.5E-30 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 SUPERFAMILY SSF53335 88 276 3.18E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 SUPERFAMILY SSF47757 10 86 1.02E-11 T 12-10-2018 R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 Pfam PF03705 CheR methyltransferase, all-alpha domain 21 71 6.4E-8 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 Gene3D G3DSA:1.10.155.10 9 85 4.3E-9 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 Pfam PF01739 CheR methyltransferase, SAM binding domain 87 275 2.1E-46 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal R615_01265 84c4de921b4464db2bb7dc25d1c2b989 297 Gene3D G3DSA:3.40.50.150 86 284 4.9E-47 T 12-10-2018 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PRINTS PR00143 Citrate synthase signature 251 271 1.4E-36 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PRINTS PR00143 Citrate synthase signature 198 226 1.4E-36 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PRINTS PR00143 Citrate synthase signature 126 139 1.4E-36 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PRINTS PR00143 Citrate synthase signature 308 324 1.4E-36 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PRINTS PR00143 Citrate synthase signature 176 191 1.4E-36 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PRINTS PR00143 Citrate synthase signature 328 342 1.4E-36 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 Gene3D G3DSA:1.10.580.10 32 355 1.5E-120 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 SUPERFAMILY SSF48256 11 368 1.7E-123 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 Gene3D G3DSA:1.10.230.10 224 322 1.5E-120 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain R615_09365 125f828741e0b510ccddfe90c7e2a544 375 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 1.4E-153 T 12-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 R615_09365 125f828741e0b510ccddfe90c7e2a544 375 PIRSF PIRSF001369 3 375 2.8E-115 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type R615_09365 125f828741e0b510ccddfe90c7e2a544 375 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 2.2E-114 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 Gene3D G3DSA:3.40.50.1100 21 302 1.4E-107 T 12-10-2018 R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 295 1.0E-64 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 44 62 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 TIGRFAM TIGR01138 cysM: cysteine synthase B 16 306 5.0E-151 T 12-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 TIGRFAM TIGR01136 cysKM: cysteine synthase 18 306 1.1E-120 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 SUPERFAMILY SSF53686 12 302 4.32E-88 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme R615_12740 786f6aa42c6b78358428f94ede3d9d52 310 Gene3D G3DSA:3.40.50.1100 49 154 1.4E-107 T 12-10-2018 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 SUPERFAMILY SSF54713 57 140 3.05E-15 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 12-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 Pfam PF00889 Elongation factor TS 71 265 1.3E-61 T 12-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 Gene3D G3DSA:3.30.479.20 57 142 2.7E-22 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 71.464 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 Gene3D G3DSA:3.30.479.20 147 264 3.9E-42 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 Gene3D G3DSA:1.10.8.10 1 56 2.9E-23 T 12-10-2018 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 SUPERFAMILY SSF46934 3 56 7.37E-17 T 12-10-2018 IPR009060 UBA-like superfamily GO:0005515 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 283 7.5E-94 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 Gene3D G3DSA:1.10.286.20 184 230 3.9E-42 T 12-10-2018 R615_05465 4c563e4135d1fdeedc9080ecb0892fa9 284 SUPERFAMILY SSF54713 143 283 4.84E-50 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 R615_01245 86629546257c16232aabca3734702e0c 132 SMART SM00448 14 127 4.8E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01245 86629546257c16232aabca3734702e0c 132 Pfam PF00072 Response regulator receiver domain 16 127 5.5E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01245 86629546257c16232aabca3734702e0c 132 SUPERFAMILY SSF52172 9 131 1.57E-36 T 12-10-2018 IPR011006 CheY-like superfamily R615_01245 86629546257c16232aabca3734702e0c 132 Gene3D G3DSA:3.40.50.12740 13 132 1.5E-38 T 12-10-2018 R615_14400 e502ca47c450dea6737f72afc9bac036 825 Pfam PF04453 Organic solvent tolerance protein 330 725 3.9E-72 T 12-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 R615_14400 e502ca47c450dea6737f72afc9bac036 825 Pfam PF03968 OstA-like protein 89 223 2.4E-9 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal R615_14400 e502ca47c450dea6737f72afc9bac036 825 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 38 801 17.131 T 12-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 R615_04820 cc0eecf6075e253910535be2c8f73afb 204 Gene3D G3DSA:3.40.50.300 2 202 3.5E-83 T 12-10-2018 R615_04820 cc0eecf6075e253910535be2c8f73afb 204 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 8 190 7.4E-84 T 12-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 R615_04820 cc0eecf6075e253910535be2c8f73afb 204 SUPERFAMILY SSF52540 21 195 1.49E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04820 cc0eecf6075e253910535be2c8f73afb 204 Pfam PF01583 Adenylylsulphate kinase 25 178 2.1E-73 T 12-10-2018 R615_04820 cc0eecf6075e253910535be2c8f73afb 204 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 24 196 38.716 T 12-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 R615_10600 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_01770 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_02010 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_04905 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_04440 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_06770 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_03715 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_05765 55d4323d1f354ebcbaaee5ccee4d1dee 118 Pfam PF05717 IS66 Orf2 like protein 9 106 2.8E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 Gene3D G3DSA:1.20.120.530 72 210 1.4E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 SUPERFAMILY SSF46785 2 69 1.26E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 Gene3D G3DSA:1.10.10.10 1 66 5.1E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 6.1E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 6.1E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 Pfam PF07729 FCD domain 75 198 5.4E-18 T 12-10-2018 IPR011711 GntR, C-terminal R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 65 3.3E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 SMART SM00895 75 199 1.1E-11 T 12-10-2018 IPR011711 GntR, C-terminal R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 SMART SM00345 7 65 1.3E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 R615_16740 f6b760bb7e456534e0459bf47ccb7d0f 230 SUPERFAMILY SSF48008 72 206 1.02E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal R615_10425 1956647e96a7c645da6b544b3457ec77 305 Pfam PF13835 Domain of unknown function (DUF4194) 24 201 1.5E-35 T 12-10-2018 IPR025449 Protein of unknown function DUF4194 R615_14810 735755a627b0953a3ee68be68bab6bf4 233 Pfam PF04402 Protein of unknown function (DUF541) 24 228 1.7E-34 T 12-10-2018 IPR007497 Protein of unknown function DUF541 R615_14810 735755a627b0953a3ee68be68bab6bf4 233 Gene3D G3DSA:3.30.110.170 26 228 1.3E-39 T 12-10-2018 R615_14810 735755a627b0953a3ee68be68bab6bf4 233 Gene3D G3DSA:3.30.70.2970 36 144 1.3E-39 T 12-10-2018 R615_13540 058302bf2f153b17292033be587934cb 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 1.5E-53 T 12-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 R615_13540 058302bf2f153b17292033be587934cb 127 SUPERFAMILY SSF51230 3 127 7.2E-46 T 12-10-2018 IPR011053 Single hybrid motif R615_13540 058302bf2f153b17292033be587934cb 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 43.216 T 12-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 R615_13540 058302bf2f153b17292033be587934cb 127 Gene3D G3DSA:2.40.50.100 2 127 2.1E-52 T 12-10-2018 R615_13540 058302bf2f153b17292033be587934cb 127 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 R615_13540 058302bf2f153b17292033be587934cb 127 Pfam PF01597 Glycine cleavage H-protein 8 126 6.8E-49 T 12-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate R615_00825 1ad8f4d6394cb5258042fbe183c5255a 167 Pfam PF07209 Protein of unknown function (DUF1415) 2 155 2.4E-48 T 12-10-2018 IPR009858 Protein of unknown function DUF1415 R615_05860 79603bee0ebc03b0505111ae7dcde848 621 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 419 586 3.2E-41 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_05860 79603bee0ebc03b0505111ae7dcde848 621 SUPERFAMILY SSF58104 311 620 1.1E-70 T 12-10-2018 R615_05860 79603bee0ebc03b0505111ae7dcde848 621 Gene3D G3DSA:1.10.287.950 290 621 1.9E-68 T 12-10-2018 R615_05860 79603bee0ebc03b0505111ae7dcde848 621 SMART SM00304 290 343 0.0012 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_05860 79603bee0ebc03b0505111ae7dcde848 621 SMART SM01358 31 268 3.0E-18 T 12-10-2018 IPR032255 Helical bimodular sensor domain R615_05860 79603bee0ebc03b0505111ae7dcde848 621 SMART SM00283 358 619 4.1E-61 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 SUPERFAMILY SSF55008 25 98 6.54E-19 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 8 96 6.6E-36 T 12-10-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 Gene3D G3DSA:3.30.70.100 28 96 8.8E-18 T 12-10-2018 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 PRINTS PR00946 Mercury scavenger protein signature 54 69 6.6E-29 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 PRINTS PR00946 Mercury scavenger protein signature 38 54 6.6E-29 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 PRINTS PR00946 Mercury scavenger protein signature 83 97 6.6E-29 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 PRINTS PR00946 Mercury scavenger protein signature 27 38 6.6E-29 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 PRINTS PR00946 Mercury scavenger protein signature 9 27 6.6E-29 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 PRINTS PR00946 Mercury scavenger protein signature 69 83 6.6E-29 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 R615_09095 a467441f712a8b6ae4acec44f6d88573 102 Pfam PF00403 Heavy-metal-associated domain 32 92 1.9E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 R615_15190 cf9116c736f83d35a9edc80fa2ff8350 161 PIRSF PIRSF019239 1 161 3.2E-46 T 12-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 R615_15190 cf9116c736f83d35a9edc80fa2ff8350 161 Pfam PF01899 Na+/H+ ion antiporter subunit 12 158 1.5E-45 T 12-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 SUPERFAMILY SSF81324 19 232 1.96E-32 T 12-10-2018 R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 Gene3D G3DSA:1.10.287.70 123 234 6.6E-31 T 12-10-2018 R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 Gene3D G3DSA:1.20.120.350 9 122 3.2E-27 T 12-10-2018 IPR027359 Voltage-dependent channel domain superfamily R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 PRINTS PR00169 Potassium channel signature 52 75 2.3E-5 T 12-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 PRINTS PR00169 Potassium channel signature 140 163 2.3E-5 T 12-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 PRINTS PR00169 Potassium channel signature 78 98 2.3E-5 T 12-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 R615_04480 edee65976d4e234b6e9d6fb4c77ddd67 268 Pfam PF00520 Ion transport protein 18 235 2.7E-43 T 12-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 149 253 9.8E-20 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Gene3D G3DSA:2.40.30.170 182 261 8.8E-38 T 12-10-2018 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Gene3D G3DSA:2.40.30.170 97 110 3.0E-9 T 12-10-2018 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Gene3D G3DSA:2.40.50.100 111 144 3.0E-9 T 12-10-2018 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Gene3D G3DSA:2.40.50.100 148 181 8.8E-38 T 12-10-2018 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Gene3D G3DSA:2.40.420.20 85 96 3.0E-9 T 12-10-2018 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 Gene3D G3DSA:2.40.420.20 262 317 8.8E-38 T 12-10-2018 R615_09060 22d6407ab0f0cec118bbcedf8f8fb7aa 339 SUPERFAMILY SSF111369 107 259 2.35E-11 T 12-10-2018 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 Pfam PF00216 Bacterial DNA-binding protein 4 92 1.5E-30 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 5.3E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 5.3E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 5.3E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 SMART SM00411 4 93 2.1E-42 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 Gene3D G3DSA:4.10.520.10 2 98 4.1E-36 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 97 4.9E-50 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 30.178 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 R615_06740 7bca73072c899ae52ceede59ad0a2b5c 101 SUPERFAMILY SSF47729 4 93 3.24E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 R615_10075 2a751a0cff9babeedc6c894b421c6ae3 532 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 60 219 2.4E-21 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 303 310 1.3E-7 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.3E-7 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 1.3E-7 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 288 310 1.0E-16 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.0E-16 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 1.0E-16 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.0E-16 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 Gene3D G3DSA:3.50.50.100 1 406 4.8E-111 T 12-10-2018 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 331 3.5E-59 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_14665 45f1f9d6254efddc02ff1a319de1b5e2 427 SUPERFAMILY SSF51905 2 331 2.33E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13615 1161f48f4504cc1728fb0f8771e99424 184 Pfam PF09905 DNA-binding protein VF530 8 70 5.0E-31 T 12-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 R615_13615 1161f48f4504cc1728fb0f8771e99424 184 Gene3D G3DSA:1.10.720.30 16 74 6.2E-28 T 12-10-2018 IPR036361 SAP domain superfamily R615_03540 b25ce3d03eae5dc460dad86bff0cc4b2 587 Gene3D G3DSA:2.40.170.20 147 587 2.8E-77 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_03540 b25ce3d03eae5dc460dad86bff0cc4b2 587 Pfam PF07715 TonB-dependent Receptor Plug Domain 37 139 7.6E-22 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_03540 b25ce3d03eae5dc460dad86bff0cc4b2 587 Gene3D G3DSA:2.170.130.10 35 146 8.7E-27 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_03540 b25ce3d03eae5dc460dad86bff0cc4b2 587 SUPERFAMILY SSF56935 37 587 3.15E-80 T 12-10-2018 R615_03540 b25ce3d03eae5dc460dad86bff0cc4b2 587 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 570 587 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site R615_03540 b25ce3d03eae5dc460dad86bff0cc4b2 587 Pfam PF00593 TonB dependent receptor 188 585 2.3E-19 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 Pfam PF08212 Lipocalin-like domain 29 174 1.5E-32 T 12-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 SUPERFAMILY SSF50814 14 176 1.94E-33 T 12-10-2018 IPR012674 Calycin R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 Gene3D G3DSA:2.40.128.20 12 176 2.2E-41 T 12-10-2018 IPR012674 Calycin R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 PRINTS PR01171 Bacterial lipocalin signature 46 62 4.2E-9 T 12-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 PRINTS PR01171 Bacterial lipocalin signature 29 43 4.2E-9 T 12-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 PRINTS PR01171 Bacterial lipocalin signature 136 147 4.2E-9 T 12-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 PRINTS PR01171 Bacterial lipocalin signature 65 74 4.2E-9 T 12-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 R615_01120 e8a7f0cf30137f49ac59f25588096ff1 177 PIRSF PIRSF036893 1 177 3.8E-40 T 12-10-2018 IPR022271 Lipocalin, ApoD type R615_16110 192388144822fd3f9e848c27f3c3fd6c 130 Gene3D G3DSA:3.30.1370.30 2 72 1.7E-25 T 12-10-2018 R615_16110 192388144822fd3f9e848c27f3c3fd6c 130 Pfam PF00410 Ribosomal protein S8 5 130 1.4E-47 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16110 192388144822fd3f9e848c27f3c3fd6c 130 SUPERFAMILY SSF56047 5 130 9.81E-44 T 12-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16110 192388144822fd3f9e848c27f3c3fd6c 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 30.435 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16110 192388144822fd3f9e848c27f3c3fd6c 130 Gene3D G3DSA:3.30.1490.10 73 129 1.5E-21 T 12-10-2018 R615_16110 192388144822fd3f9e848c27f3c3fd6c 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 4.3E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.3E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.3E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 Pfam PF00106 short chain dehydrogenase 14 197 1.1E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 SUPERFAMILY SSF51735 9 252 8.22E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_03625 d09e798ab729c658e913014a68064594 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_03625 d09e798ab729c658e913014a68064594 267 Gene3D G3DSA:3.40.50.720 1 256 5.2E-58 T 12-10-2018 R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.2E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.2E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.2E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.2E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_03625 d09e798ab729c658e913014a68064594 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.2E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_01310 2e764c996345f0e913f36ef3e2b07b88 403 Pfam PF04932 O-Antigen ligase 186 330 2.1E-18 T 12-10-2018 IPR007016 O-antigen ligase-related R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 168 244 6.6E-35 T 12-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 SUPERFAMILY SSF52833 8 243 2.13E-45 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 Pfam PF08534 Redoxin 8 162 7.6E-32 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 ProSitePatterns PS00195 Glutaredoxin active site. 177 193 - T 12-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 Pfam PF00462 Glutaredoxin 175 233 8.3E-17 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 Gene3D G3DSA:3.40.30.10 174 243 7.8E-23 T 12-10-2018 R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 PRINTS PR00160 Glutaredoxin signature 175 193 3.1E-14 T 12-10-2018 IPR014025 Glutaredoxin subgroup R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 PRINTS PR00160 Glutaredoxin signature 230 243 3.1E-14 T 12-10-2018 IPR014025 Glutaredoxin subgroup R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 PRINTS PR00160 Glutaredoxin signature 216 229 3.1E-14 T 12-10-2018 IPR014025 Glutaredoxin subgroup R615_14050 90c6ba36a2830a81e90ffa37181949b5 246 Gene3D G3DSA:3.40.30.10 7 168 2.9E-60 T 12-10-2018 R615_07740 08b553ec48c900f734e12f665f183917 478 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 474 9.4E-225 T 12-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 R615_07740 08b553ec48c900f734e12f665f183917 478 SUPERFAMILY SSF81442 10 471 2.22E-123 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_07740 08b553ec48c900f734e12f665f183917 478 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 445 4.5E-114 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_07740 08b553ec48c900f734e12f665f183917 478 Gene3D G3DSA:1.20.210.10 2 477 8.9E-205 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_07740 08b553ec48c900f734e12f665f183917 478 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_17260 754ef611a3f07c6ebdd95eeaea0b25ff 487 Gene3D G3DSA:3.40.50.11290 219 317 7.4E-40 T 12-10-2018 R615_17260 754ef611a3f07c6ebdd95eeaea0b25ff 487 SUPERFAMILY SSF56059 28 473 6.33E-64 T 12-10-2018 R615_17260 754ef611a3f07c6ebdd95eeaea0b25ff 487 Gene3D G3DSA:3.30.1490.270 354 414 4.2E-27 T 12-10-2018 R615_17260 754ef611a3f07c6ebdd95eeaea0b25ff 487 PIRSF PIRSF005522 1 485 3.4E-220 T 12-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 R615_17260 754ef611a3f07c6ebdd95eeaea0b25ff 487 Pfam PF14403 Circularly permuted ATP-grasp type 2 81 458 1.7E-162 T 12-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 SUPERFAMILY SSF53335 87 280 2.82E-52 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 2.2E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PRINTS PR00996 Glutamate methyltransferase family signature 80 92 2.2E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PRINTS PR00996 Glutamate methyltransferase family signature 152 168 2.2E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PRINTS PR00996 Glutamate methyltransferase family signature 42 55 2.2E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PRINTS PR00996 Glutamate methyltransferase family signature 221 235 2.2E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PRINTS PR00996 Glutamate methyltransferase family signature 240 263 2.2E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 Pfam PF01739 CheR methyltransferase, SAM binding domain 87 277 1.5E-63 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 Gene3D G3DSA:3.40.50.150 86 281 1.4E-64 T 12-10-2018 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 Pfam PF03705 CheR methyltransferase, all-alpha domain 21 72 1.8E-13 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 SMART SM00138 20 281 1.9E-102 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 SUPERFAMILY SSF47757 14 86 1.44E-17 T 12-10-2018 R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 PIRSF PIRSF000410 5 282 6.4E-98 T 12-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR R615_05150 faeff677ac79bf99dc9ef1e706a3af24 282 Gene3D G3DSA:1.10.155.10 10 85 1.3E-21 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Pfam PF00207 Alpha-2-macroglobulin family 980 1059 6.0E-11 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 PIRSF PIRSF038980 3 1654 0.0 T 12-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 SMART SM01359 762 909 2.9E-28 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 764 908 6.2E-10 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Gene3D G3DSA:2.60.40.1930 399 495 4.5E-7 T 12-10-2018 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 300 394 3.4E-15 T 12-10-2018 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Gene3D G3DSA:1.50.10.20 1169 1437 1.8E-25 T 12-10-2018 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 SUPERFAMILY SSF48239 1172 1431 6.95E-32 T 12-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1174 1199 1.2E-5 T 12-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 Pfam PF01835 MG2 domain 400 491 1.2E-18 T 12-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 R615_16305 a246ab9b7bcc59c08bb76f8c0996c81e 1654 SMART SM01360 973 1060 1.8E-26 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 R615_15755 a5c9543fceecc68a4e53f1f5a4bd6903 367 ProSitePatterns PS00018 EF-hand calcium-binding domain. 55 67 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site R615_15755 a5c9543fceecc68a4e53f1f5a4bd6903 367 Pfam PF13795 HupE / UreJ protein 179 338 1.7E-40 T 12-10-2018 IPR032809 Putative HupE/UreJ protein R615_05815 d3bdfc282ffdaec0cf239384a1bcadb0 71 Pfam PF14375 Cysteine-rich CWC 11 61 3.7E-13 T 12-10-2018 IPR032720 Cysteine-rich CWC R615_14040 ed87bd7e8bcc9eb0fb083c5d6610ba0a 180 Gene3D G3DSA:3.90.280.10 9 179 1.6E-57 T 12-10-2018 IPR036610 PEBP-like superfamily R615_14040 ed87bd7e8bcc9eb0fb083c5d6610ba0a 180 Pfam PF01161 Phosphatidylethanolamine-binding protein 44 177 1.3E-36 T 12-10-2018 IPR008914 Phosphatidylethanolamine-binding protein R615_14040 ed87bd7e8bcc9eb0fb083c5d6610ba0a 180 SUPERFAMILY SSF49777 19 179 1.7E-53 T 12-10-2018 IPR036610 PEBP-like superfamily R615_14040 ed87bd7e8bcc9eb0fb083c5d6610ba0a 180 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 38 177 3.9E-48 T 12-10-2018 IPR005247 YbhB/YbcL R615_00750 584df617733cbbc1c88612ea47e9ec49 418 SMART SM00388 198 263 4.4E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 SMART SM00387 305 416 4.8E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Pfam PF11808 Domain of unknown function (DUF3329) 5 86 9.2E-7 T 12-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 SUPERFAMILY SSF47384 184 262 6.87E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 SMART SM00091 95 161 0.0097 T 12-10-2018 IPR000014 PAS domain R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 307 414 5.0E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_00750 584df617733cbbc1c88612ea47e9ec49 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 369 2.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 413 2.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 355 2.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 394 2.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Pfam PF00989 PAS fold 96 156 1.6E-5 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 SUPERFAMILY SSF55785 86 153 7.68E-7 T 12-10-2018 IPR035965 PAS domain superfamily R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 262 7.1E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Gene3D G3DSA:3.30.450.20 82 195 1.4E-9 T 12-10-2018 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Gene3D G3DSA:1.10.287.130 196 263 5.5E-23 T 12-10-2018 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 Gene3D G3DSA:3.30.565.10 269 416 4.5E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00750 584df617733cbbc1c88612ea47e9ec49 418 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 93 412 1.2E-103 T 12-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 R615_00750 584df617733cbbc1c88612ea47e9ec49 418 SUPERFAMILY SSF55874 252 414 1.88E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_13225 1f12b5b3df8d27afd0ad56e1a4e8cb35 248 SUPERFAMILY SSF69572 2 246 1.44E-81 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 R615_13225 1f12b5b3df8d27afd0ad56e1a4e8cb35 248 Pfam PF00899 ThiF family 9 242 3.7E-62 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 R615_13225 1f12b5b3df8d27afd0ad56e1a4e8cb35 248 Gene3D G3DSA:3.40.50.720 1 248 7.8E-86 T 12-10-2018 R615_03985 fa518c4662b99572cb8652973b20e28c 267 Pfam PF08223 PaaX-like protein C-terminal domain 176 236 3.0E-5 T 12-10-2018 IPR013225 PaaX-like, C-terminal R615_03010 7c2b1865b0e481573fb264bb233e6f6d 400 Gene3D G3DSA:3.40.50.2000 7 205 3.4E-23 T 12-10-2018 R615_03010 7c2b1865b0e481573fb264bb233e6f6d 400 Pfam PF00534 Glycosyl transferases group 1 196 357 2.8E-23 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 R615_03010 7c2b1865b0e481573fb264bb233e6f6d 400 Pfam PF13439 Glycosyltransferase Family 4 19 186 3.4E-22 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 R615_03010 7c2b1865b0e481573fb264bb233e6f6d 400 SUPERFAMILY SSF53756 8 375 4.28E-69 T 12-10-2018 R615_03010 7c2b1865b0e481573fb264bb233e6f6d 400 Gene3D G3DSA:3.40.50.2000 206 368 1.3E-28 T 12-10-2018 R615_01650 927273061c3860211c91fc8ccc6521e7 612 Gene3D G3DSA:3.50.30.80 419 571 1.1E-51 T 12-10-2018 R615_01650 927273061c3860211c91fc8ccc6521e7 612 Pfam PF00920 Dehydratase family 34 603 5.3E-217 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_01650 927273061c3860211c91fc8ccc6521e7 612 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_01650 927273061c3860211c91fc8ccc6521e7 612 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 606 2.9E-251 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_01650 927273061c3860211c91fc8ccc6521e7 612 SUPERFAMILY SSF52016 419 607 2.9E-58 T 12-10-2018 R615_01650 927273061c3860211c91fc8ccc6521e7 612 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 606 44.403 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_01650 927273061c3860211c91fc8ccc6521e7 612 SUPERFAMILY SSF143975 4 418 5.75E-136 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_01650 927273061c3860211c91fc8ccc6521e7 612 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 R615_10640 e73fc5fd89f60c2402f349f7468c944a 493 PIRSF PIRSF001221 447 484 0.13 T 12-10-2018 R615_10640 e73fc5fd89f60c2402f349f7468c944a 493 PIRSF PIRSF001221 2 415 3.9E-52 T 12-10-2018 R615_10640 e73fc5fd89f60c2402f349f7468c944a 493 Pfam PF01425 Amidase 27 472 1.4E-105 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_10640 e73fc5fd89f60c2402f349f7468c944a 493 SUPERFAMILY SSF75304 3 481 2.75E-122 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_10640 e73fc5fd89f60c2402f349f7468c944a 493 Gene3D G3DSA:3.90.1300.10 2 488 7.8E-127 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 9.3E-5 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 SMART SM00478 38 185 2.1E-56 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.4E-18 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 Gene3D G3DSA:1.10.340.30 21 132 3.9E-76 T 12-10-2018 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 PIRSF PIRSF001435 1 211 1.2E-49 T 12-10-2018 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.3E-9 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 Gene3D G3DSA:1.10.1670.10 11 203 3.9E-76 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 TIGRFAM TIGR01083 nth: endonuclease III 3 194 1.8E-84 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.371 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 SUPERFAMILY SSF48150 2 207 2.2E-71 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 R615_05870 9a6f48a9502bdc5c01804c3c321e2ed5 211 SMART SM00525 186 206 1.6E-5 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 R615_09730 7d289e088abf0f21f418ccba2b5dc7d2 529 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 238 245 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 R615_09730 7d289e088abf0f21f418ccba2b5dc7d2 529 Gene3D G3DSA:3.40.309.10 243 434 1.3E-142 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_09730 7d289e088abf0f21f418ccba2b5dc7d2 529 Gene3D G3DSA:3.40.605.10 10 462 1.3E-142 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_09730 7d289e088abf0f21f418ccba2b5dc7d2 529 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 266 277 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 R615_09730 7d289e088abf0f21f418ccba2b5dc7d2 529 SUPERFAMILY SSF53720 9 465 6.02E-134 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_09730 7d289e088abf0f21f418ccba2b5dc7d2 529 Pfam PF00171 Aldehyde dehydrogenase family 10 463 7.1E-132 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_01710 16d9a88568201ce51b6823e787a3b956 417 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 7 371 6.0E-84 T 12-10-2018 IPR017740 Type VI secretion system-associated, ImpA R615_01710 16d9a88568201ce51b6823e787a3b956 417 Pfam PF06812 ImpA, N-terminal, type VI secretion system 14 141 1.1E-33 T 12-10-2018 IPR010657 ImpA, N-terminal R615_04975 4bb7cbf98707242214090944ca0cd84e 289 Gene3D G3DSA:3.90.550.10 1 289 1.9E-85 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_04975 4bb7cbf98707242214090944ca0cd84e 289 Pfam PF00483 Nucleotidyl transferase 5 241 2.7E-71 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 R615_04975 4bb7cbf98707242214090944ca0cd84e 289 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 288 1.4E-154 T 12-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 R615_04975 4bb7cbf98707242214090944ca0cd84e 289 SUPERFAMILY SSF53448 5 288 4.98E-91 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_16055 cc6526f67488a79c754587d7cfbed9a4 131 Pfam PF01196 Ribosomal protein L17 20 116 2.3E-33 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16055 cc6526f67488a79c754587d7cfbed9a4 131 Gene3D G3DSA:3.90.1030.10 1 117 2.3E-46 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16055 cc6526f67488a79c754587d7cfbed9a4 131 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.916 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16055 cc6526f67488a79c754587d7cfbed9a4 131 SUPERFAMILY SSF64263 1 119 1.57E-50 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16055 cc6526f67488a79c754587d7cfbed9a4 131 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16055 cc6526f67488a79c754587d7cfbed9a4 131 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.2E-47 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03300 4bf2fa8cf0285e6d85b5c1f10e218f9a 147 Gene3D G3DSA:3.10.50.40 15 142 2.6E-40 T 12-10-2018 R615_03300 4bf2fa8cf0285e6d85b5c1f10e218f9a 147 Gene3D G3DSA:2.40.10.330 73 129 2.6E-40 T 12-10-2018 R615_03300 4bf2fa8cf0285e6d85b5c1f10e218f9a 147 SUPERFAMILY SSF54534 6 144 1.67E-36 T 12-10-2018 R615_03300 4bf2fa8cf0285e6d85b5c1f10e218f9a 147 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 6 141 2.2E-16 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 Gene3D G3DSA:3.40.50.1820 19 314 2.1E-66 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 SUPERFAMILY SSF53474 19 302 2.64E-63 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 Pfam PF00561 alpha/beta hydrolase fold 58 164 6.1E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 128 141 9.7E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 98 9.7E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 9.7E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14890 3adec3d99fab7005ded8a9f5fff0f7b0 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 246 260 9.7E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 SMART SM01091 344 422 1.8E-21 T 12-10-2018 IPR005170 Transporter-associated domain R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 SMART SM00116 280 328 6.4 T 12-10-2018 IPR000644 CBS domain R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 SMART SM00116 216 265 0.0033 T 12-10-2018 IPR000644 CBS domain R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 SUPERFAMILY SSF56176 342 426 1.45E-19 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 Gene3D G3DSA:3.30.465.10 342 420 3.1E-25 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 Pfam PF00571 CBS domain 209 265 5.4E-6 T 12-10-2018 IPR000644 CBS domain R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 Pfam PF00571 CBS domain 275 328 3.3E-6 T 12-10-2018 IPR000644 CBS domain R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 SUPERFAMILY SSF54631 195 331 1.21E-32 T 12-10-2018 R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 Pfam PF03471 Transporter associated domain 346 420 8.2E-15 T 12-10-2018 IPR005170 Transporter-associated domain R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 Gene3D G3DSA:3.10.580.10 189 340 6.0E-46 T 12-10-2018 R615_12525 7ce29448ed6433ae5b3120ad2f3ec5ca 429 Pfam PF01595 Domain of unknown function DUF21 12 184 6.2E-47 T 12-10-2018 IPR002550 CNNM, transmembrane domain R615_06415 2a933734d910b93cbb577e0044ecfc3a 393 Gene3D G3DSA:3.90.1150.10 27 388 8.4E-132 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_06415 2a933734d910b93cbb577e0044ecfc3a 393 SUPERFAMILY SSF53383 4 392 1.65E-114 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_06415 2a933734d910b93cbb577e0044ecfc3a 393 Gene3D G3DSA:3.40.640.10 64 287 8.4E-132 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_06415 2a933734d910b93cbb577e0044ecfc3a 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 R615_06415 2a933734d910b93cbb577e0044ecfc3a 393 Pfam PF00155 Aminotransferase class I and II 33 388 5.4E-70 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_03575 2fb0444a0b2d57c281fab0f26643df98 491 Gene3D G3DSA:2.30.40.20 28 78 3.6E-5 T 12-10-2018 R615_03575 2fb0444a0b2d57c281fab0f26643df98 491 Gene3D G3DSA:3.30.70.270 27 164 3.6E-5 T 12-10-2018 R615_03575 2fb0444a0b2d57c281fab0f26643df98 491 Pfam PF00817 impB/mucB/samB family 28 162 4.1E-6 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 R615_03575 2fb0444a0b2d57c281fab0f26643df98 491 SUPERFAMILY SSF56672 16 235 4.0E-26 T 12-10-2018 R615_14700 974151432d655eaf0fe5817118df66e4 218 Pfam PF13305 WHG domain 90 182 7.4E-8 T 12-10-2018 IPR025996 WHG domain R615_14700 974151432d655eaf0fe5817118df66e4 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.7E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14700 974151432d655eaf0fe5817118df66e4 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.7E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14700 974151432d655eaf0fe5817118df66e4 218 SUPERFAMILY SSF48498 83 189 3.2E-6 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_14700 974151432d655eaf0fe5817118df66e4 218 SUPERFAMILY SSF46689 6 77 8.98E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_14700 974151432d655eaf0fe5817118df66e4 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 58 2.6E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14700 974151432d655eaf0fe5817118df66e4 218 Gene3D G3DSA:1.10.357.10 3 201 8.7E-31 T 12-10-2018 R615_05525 169895bf71241530a4dd6d0aa9670ab5 379 Gene3D G3DSA:3.40.50.2000 170 354 2.1E-6 T 12-10-2018 R615_05525 169895bf71241530a4dd6d0aa9670ab5 379 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 373 6.7E-123 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 R615_05525 169895bf71241530a4dd6d0aa9670ab5 379 SUPERFAMILY SSF53756 1 351 1.01E-35 T 12-10-2018 R615_05525 169895bf71241530a4dd6d0aa9670ab5 379 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 376 40.071 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 R615_05525 169895bf71241530a4dd6d0aa9670ab5 379 Pfam PF02684 Lipid-A-disaccharide synthetase 3 368 1.1E-118 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 R615_03830 7e8257416252f9203be2ca4dc62da165 324 Gene3D G3DSA:1.10.10.60 219 324 1.1E-22 T 12-10-2018 R615_03830 7e8257416252f9203be2ca4dc62da165 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 289 304 3.4E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_03830 7e8257416252f9203be2ca4dc62da165 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 320 3.4E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_03830 7e8257416252f9203be2ca4dc62da165 324 Pfam PF12833 Helix-turn-helix domain 245 320 6.8E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_03830 7e8257416252f9203be2ca4dc62da165 324 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 16 190 1.3E-25 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_03830 7e8257416252f9203be2ca4dc62da165 324 SUPERFAMILY SSF46689 274 321 2.91E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_03830 7e8257416252f9203be2ca4dc62da165 324 SMART SM00342 238 320 3.7E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_08715 0d27246b0b92ab1d8ccb32908c0e3def 115 Gene3D G3DSA:3.40.1260.10 1 114 5.7E-24 T 12-10-2018 IPR027396 DsrEFH-like R615_08715 0d27246b0b92ab1d8ccb32908c0e3def 115 Pfam PF02635 DsrE/DsrF-like family 2 114 5.4E-14 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein R615_08715 0d27246b0b92ab1d8ccb32908c0e3def 115 SUPERFAMILY SSF75169 1 113 4.71E-21 T 12-10-2018 IPR027396 DsrEFH-like R615_05570 1866df315ed7f1224225a79753f3eddd 533 SUPERFAMILY SSF51621 17 514 1.44E-117 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 R615_05570 1866df315ed7f1224225a79753f3eddd 533 Gene3D G3DSA:3.20.20.60 415 531 1.0E-17 T 12-10-2018 R615_05570 1866df315ed7f1224225a79753f3eddd 533 Pfam PF00463 Isocitrate lyase family 98 269 1.7E-19 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 R615_05570 1866df315ed7f1224225a79753f3eddd 533 Pfam PF00463 Isocitrate lyase family 317 394 1.5E-10 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 R615_05570 1866df315ed7f1224225a79753f3eddd 533 Pfam PF00463 Isocitrate lyase family 448 530 4.1E-11 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 R615_05570 1866df315ed7f1224225a79753f3eddd 533 PIRSF PIRSF001362 416 532 3.6E-5 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 R615_05570 1866df315ed7f1224225a79753f3eddd 533 PIRSF PIRSF001362 291 402 8.4E-12 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 R615_05570 1866df315ed7f1224225a79753f3eddd 533 PIRSF PIRSF001362 3 277 1.1E-27 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 R615_11580 2b4d6e5e2fda3bb49feb51ab115488fb 356 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 335 1.1E-85 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 R615_11580 2b4d6e5e2fda3bb49feb51ab115488fb 356 Gene3D G3DSA:3.20.20.70 6 356 1.7E-137 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_11580 2b4d6e5e2fda3bb49feb51ab115488fb 356 SUPERFAMILY SSF51395 3 355 3.18E-121 T 12-10-2018 R615_13415 1b4f78a25d3b81d561914701ab86926d 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 5.7E-143 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13415 1b4f78a25d3b81d561914701ab86926d 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13415 1b4f78a25d3b81d561914701ab86926d 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 3.9E-6 T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13415 1b4f78a25d3b81d561914701ab86926d 360 Pfam PF00953 Glycosyl transferase family 4 99 284 3.7E-37 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 R615_13415 1b4f78a25d3b81d561914701ab86926d 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13415 1b4f78a25d3b81d561914701ab86926d 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 24.619 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_03815 7acc9f0ad40b6e3174a3a52a49846f4b 475 Pfam PF00171 Aldehyde dehydrogenase family 18 467 2.2E-142 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 R615_03815 7acc9f0ad40b6e3174a3a52a49846f4b 475 Gene3D G3DSA:3.40.309.10 251 439 6.1E-156 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 R615_03815 7acc9f0ad40b6e3174a3a52a49846f4b 475 Gene3D G3DSA:3.40.605.10 27 460 6.1E-156 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 R615_03815 7acc9f0ad40b6e3174a3a52a49846f4b 475 SUPERFAMILY SSF53720 2 473 1.44E-140 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 R615_03815 7acc9f0ad40b6e3174a3a52a49846f4b 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 R615_03535 9649d924b1c7a90b428b8844aa54e54f 190 Gene3D G3DSA:1.20.1200.10 17 188 1.7E-58 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 R615_03535 9649d924b1c7a90b428b8844aa54e54f 190 SUPERFAMILY SSF89028 7 183 2.55E-56 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 R615_03535 9649d924b1c7a90b428b8844aa54e54f 190 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 183 3.0E-31 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 R615_03535 9649d924b1c7a90b428b8844aa54e54f 190 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 183 4.3E-57 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 R615_03535 9649d924b1c7a90b428b8844aa54e54f 190 Pfam PF01923 Cobalamin adenosyltransferase 8 170 1.4E-56 T 12-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 R615_06915 bb2ae5e8e6e7c643929e88f6453a710e 149 Pfam PF13279 Thioesterase-like superfamily 20 137 9.6E-14 T 12-10-2018 R615_06915 bb2ae5e8e6e7c643929e88f6453a710e 149 SUPERFAMILY SSF54637 3 140 2.36E-27 T 12-10-2018 IPR029069 HotDog domain superfamily R615_06915 bb2ae5e8e6e7c643929e88f6453a710e 149 Gene3D G3DSA:3.10.129.10 3 139 7.8E-25 T 12-10-2018 R615_14110 d537f625956b330661d3c7dcea9ae3d4 175 Pfam PF00719 Inorganic pyrophosphatase 18 174 2.4E-54 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 R615_14110 d537f625956b330661d3c7dcea9ae3d4 175 SUPERFAMILY SSF50324 3 174 7.2E-67 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 R615_14110 d537f625956b330661d3c7dcea9ae3d4 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.385 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 R615_14110 d537f625956b330661d3c7dcea9ae3d4 175 Gene3D G3DSA:3.90.80.10 1 175 5.3E-74 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 R615_14945 2b0503dc160f132ab944e13edcc520c8 127 Gene3D G3DSA:1.10.357.10 1 123 6.3E-5 T 12-10-2018 R615_13105 0ed43bc83850cd64b2e34d920a5fd89c 153 Gene3D G3DSA:3.40.140.10 31 153 9.0E-43 T 12-10-2018 R615_13105 0ed43bc83850cd64b2e34d920a5fd89c 153 TIGRFAM TIGR00608 radc: DNA repair protein RadC 12 153 3.1E-48 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 R615_13105 0ed43bc83850cd64b2e34d920a5fd89c 153 Pfam PF04002 RadC-like JAB domain 32 151 9.5E-45 T 12-10-2018 IPR025657 RadC-like JAB domain R615_13105 0ed43bc83850cd64b2e34d920a5fd89c 153 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 102 107 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site R615_13105 0ed43bc83850cd64b2e34d920a5fd89c 153 SUPERFAMILY SSF102712 79 121 2.48E-5 T 12-10-2018 R615_04500 805d5f9e3af82027a716991808f35723 173 SUPERFAMILY SSF103473 65 165 1.31E-21 T 12-10-2018 IPR036259 MFS transporter superfamily R615_04500 805d5f9e3af82027a716991808f35723 173 Gene3D G3DSA:1.20.1720.10 68 170 1.2E-23 T 12-10-2018 R615_04500 805d5f9e3af82027a716991808f35723 173 Pfam PF07690 Major Facilitator Superfamily 67 166 2.0E-19 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_04500 805d5f9e3af82027a716991808f35723 173 Gene3D G3DSA:2.40.30.170 8 67 5.7E-8 T 12-10-2018 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Pfam PF02926 THUMP domain 40 160 1.4E-12 T 12-10-2018 IPR004114 THUMP domain GO:0003723 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Gene3D G3DSA:3.40.50.150 499 713 2.9E-70 T 12-10-2018 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 318 324 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 12 713 30.214 T 12-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Gene3D G3DSA:3.30.750.80 407 498 1.0E-38 T 12-10-2018 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Gene3D G3DSA:3.30.2130.30 14 266 4.9E-124 T 12-10-2018 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 SUPERFAMILY SSF53335 410 710 2.11E-66 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Gene3D G3DSA:3.40.50.150 176 382 4.9E-124 T 12-10-2018 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 SMART SM00981 64 161 5.7E-16 T 12-10-2018 IPR004114 THUMP domain GO:0003723 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 SUPERFAMILY SSF53335 151 387 1.1E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 489 669 9.6E-24 T 12-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 R615_11440 327fb121d8513bd0e2dedee107363c3c 713 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 206 217 - T 12-10-2018 IPR000241 Putative RNA methylase domain R615_11440 327fb121d8513bd0e2dedee107363c3c 713 Pfam PF01170 Putative RNA methylase family UPF0020 169 384 2.2E-44 T 12-10-2018 IPR000241 Putative RNA methylase domain R615_11440 327fb121d8513bd0e2dedee107363c3c 713 PIRSF PIRSF037618 7 713 2.8E-287 T 12-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 R615_16930 07751829eadfa0b869d66ec4e03c669c 139 SUPERFAMILY SSF54427 1 130 3.71E-24 T 12-10-2018 IPR032710 NTF2-like domain superfamily R615_16930 07751829eadfa0b869d66ec4e03c669c 139 Gene3D G3DSA:3.10.450.50 1 131 2.7E-26 T 12-10-2018 R615_16930 07751829eadfa0b869d66ec4e03c669c 139 Pfam PF07366 SnoaL-like polyketide cyclase 6 128 2.4E-19 T 12-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 R615_10625 242324a804fe81631ddc131b7292482e 119 SUPERFAMILY SSF46689 10 107 4.48E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_10625 242324a804fe81631ddc131b7292482e 119 Gene3D G3DSA:1.10.10.60 14 99 4.0E-8 T 12-10-2018 R615_10625 242324a804fe81631ddc131b7292482e 119 Pfam PF01527 Transposase 11 94 4.8E-15 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 Gene3D G3DSA:1.10.1660.10 1 127 1.9E-35 T 12-10-2018 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 7.9E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 7.9E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 7.9E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 SUPERFAMILY SSF46955 6 128 2.97E-32 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 Pfam PF13411 MerR HTH family regulatory protein 6 72 3.9E-19 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 6 128 4.9E-53 T 12-10-2018 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 R615_09085 c8c5cbed21eb9488c81c88f081c46f58 134 SMART SM00422 5 74 8.8E-26 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_09595 ff42aed3647f2b08d9ac68fbf2486636 146 PIRSF PIRSF006173 1 146 9.7E-61 T 12-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 R615_09595 ff42aed3647f2b08d9ac68fbf2486636 146 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 1.0E-7 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein R615_09595 ff42aed3647f2b08d9ac68fbf2486636 146 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 146 37.594 T 12-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 SMART SM00825 Beta-ketoacyl synthase 4 403 4.4E-13 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 Gene3D G3DSA:3.40.47.10 258 403 3.0E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 SUPERFAMILY SSF53901 213 401 1.11E-59 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 2.9E-43 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 Gene3D G3DSA:3.40.47.10 1 252 3.2E-63 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 SUPERFAMILY SSF53901 2 251 1.15E-60 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_10085 d709754ab1f4ed5d7bbd81e1451c0b01 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 360 1.6E-28 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 14 248 38.924 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 Pfam PF01209 ubiE/COQ5 methyltransferase family 18 248 1.2E-102 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 SUPERFAMILY SSF53335 16 245 5.73E-47 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 34 49 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 23 248 2.6E-84 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 156 170 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 R615_01080 257a80730db9c0b3c47cdda11577a8e8 249 Gene3D G3DSA:3.40.50.150 29 249 7.4E-75 T 12-10-2018 R615_01250 4db7f1034cb4db503f17660acbcc92cd 123 Pfam PF00072 Response regulator receiver domain 4 115 4.1E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01250 4db7f1034cb4db503f17660acbcc92cd 123 SMART SM00448 2 115 1.1E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_01250 4db7f1034cb4db503f17660acbcc92cd 123 SUPERFAMILY SSF52172 1 118 6.12E-38 T 12-10-2018 IPR011006 CheY-like superfamily R615_01250 4db7f1034cb4db503f17660acbcc92cd 123 Gene3D G3DSA:3.40.50.12740 1 123 1.0E-44 T 12-10-2018 R615_09270 a11dd6e5de024b6a5350188ad02d6374 224 SUPERFAMILY SSF81342 7 193 5.02E-33 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 R615_09270 a11dd6e5de024b6a5350188ad02d6374 224 Gene3D G3DSA:1.20.950.20 1 179 3.9E-17 T 12-10-2018 R615_09270 a11dd6e5de024b6a5350188ad02d6374 224 Pfam PF01292 Prokaryotic cytochrome b561 11 190 5.7E-24 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 R615_05155 9431547a1b31182466d09a1e340603cf 221 Pfam PF03975 CheD chemotactic sensory transduction 78 185 1.2E-30 T 12-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 R615_05155 9431547a1b31182466d09a1e340603cf 221 Gene3D G3DSA:3.30.1330.200 33 196 5.2E-50 T 12-10-2018 IPR038592 CheD-like superfamily R615_05155 9431547a1b31182466d09a1e340603cf 221 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 30 189 27.638 T 12-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 R615_05155 9431547a1b31182466d09a1e340603cf 221 SUPERFAMILY SSF64438 37 190 3.39E-47 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic R615_02945 9ca261f74c78b65b0399266ab16489d9 205 Pfam PF01169 Uncharacterized protein family UPF0016 20 99 8.5E-19 T 12-10-2018 IPR001727 Gdt1 family R615_02945 9ca261f74c78b65b0399266ab16489d9 205 Pfam PF01169 Uncharacterized protein family UPF0016 123 197 7.6E-21 T 12-10-2018 IPR001727 Gdt1 family R615_01745 3fac3411d43367977e317328d03d0cb0 886 Pfam PF07724 AAA domain (Cdc48 subfamily) 617 783 6.9E-38 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 SUPERFAMILY SSF52540 567 869 5.67E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01745 3fac3411d43367977e317328d03d0cb0 886 Gene3D G3DSA:1.10.8.60 790 886 8.3E-11 T 12-10-2018 R615_01745 3fac3411d43367977e317328d03d0cb0 886 Gene3D G3DSA:3.40.50.300 177 368 1.7E-63 T 12-10-2018 R615_01745 3fac3411d43367977e317328d03d0cb0 886 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 320 332 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 SMART SM01086 790 883 1.2E-9 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_01745 3fac3411d43367977e317328d03d0cb0 886 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 229 361 7.0E-9 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 Gene3D G3DSA:3.40.50.300 572 789 4.7E-65 T 12-10-2018 R615_01745 3fac3411d43367977e317328d03d0cb0 886 SMART SM00382 224 369 2.5E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_01745 3fac3411d43367977e317328d03d0cb0 886 SMART SM00382 618 760 1.8E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_01745 3fac3411d43367977e317328d03d0cb0 886 SUPERFAMILY SSF81923 11 134 2.55E-18 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 R615_01745 3fac3411d43367977e317328d03d0cb0 886 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 622 640 1.7E-30 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 667 685 1.7E-30 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 729 743 1.7E-30 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 696 714 1.7E-30 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_01745 3fac3411d43367977e317328d03d0cb0 886 Gene3D G3DSA:3.40.50.300 370 565 3.9E-45 T 12-10-2018 R615_01745 3fac3411d43367977e317328d03d0cb0 886 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 790 867 4.1E-11 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_01745 3fac3411d43367977e317328d03d0cb0 886 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 106 135 1.1 T 12-10-2018 IPR004176 Clp, N-terminal R615_01745 3fac3411d43367977e317328d03d0cb0 886 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 27 71 8.1E-5 T 12-10-2018 IPR004176 Clp, N-terminal R615_01745 3fac3411d43367977e317328d03d0cb0 886 SUPERFAMILY SSF52540 185 524 7.03E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01745 3fac3411d43367977e317328d03d0cb0 886 Gene3D G3DSA:1.10.1780.10 1 160 2.3E-38 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 R615_01745 3fac3411d43367977e317328d03d0cb0 886 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 15 873 0.0 T 12-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 R615_05890 a17a33944c55c5d989105d12154495ca 115 Gene3D G3DSA:3.40.30.10 1 114 2.0E-43 T 12-10-2018 R615_05890 a17a33944c55c5d989105d12154495ca 115 Pfam PF03960 ArsC family 5 110 1.3E-15 T 12-10-2018 IPR006660 Arsenate reductase-like R615_05890 a17a33944c55c5d989105d12154495ca 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 112 6.5E-30 T 12-10-2018 IPR006504 Transcriptional regulator Spx/MgsR R615_05890 a17a33944c55c5d989105d12154495ca 115 SUPERFAMILY SSF52833 1 113 9.78E-36 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 SUPERFAMILY SSF53474 28 294 1.06E-66 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 Pfam PF12697 Alpha/beta hydrolase family 51 286 6.5E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 Gene3D G3DSA:3.40.50.1820 18 297 4.5E-73 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 74 89 2.4E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 240 254 2.4E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 118 131 2.4E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14880 0618b21e52c848d28e4c0e77200fd00e 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 132 145 2.4E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_07545 634cc4b3468ba0127e361cae8ec4fb62 576 Pfam PF00501 AMP-binding enzyme 33 472 1.9E-102 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_07545 634cc4b3468ba0127e361cae8ec4fb62 576 Pfam PF13193 AMP-binding enzyme C-terminal domain 481 555 5.1E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_07545 634cc4b3468ba0127e361cae8ec4fb62 576 Gene3D G3DSA:3.40.50.12780 12 463 1.3E-111 T 12-10-2018 R615_07545 634cc4b3468ba0127e361cae8ec4fb62 576 SUPERFAMILY SSF56801 23 566 1.31E-141 T 12-10-2018 R615_07545 634cc4b3468ba0127e361cae8ec4fb62 576 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_07545 634cc4b3468ba0127e361cae8ec4fb62 576 Gene3D G3DSA:3.30.300.310 468 570 8.8E-31 T 12-10-2018 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 12-10-2018 IPR019844 Cold-shock conserved site R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 5.8E-37 T 12-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 SMART SM00357 3 67 7.6E-25 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 Gene3D G3DSA:2.40.50.140 1 76 2.6E-26 T 12-10-2018 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 PRINTS PR00050 Cold shock protein signature 25 34 3.2E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 PRINTS PR00050 Cold shock protein signature 4 19 3.2E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 PRINTS PR00050 Cold shock protein signature 40 58 3.2E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 SUPERFAMILY SSF50249 1 67 4.07E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 PIRSF PIRSF002599 1 85 6.1E-23 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 R615_08630 b20bf028d6d1edf83f62a324c7d1d560 89 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.5E-27 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 R615_12860 6b28297e6380d5c80a5c787007245b13 214 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 132 210 5.1E-22 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 R615_12860 6b28297e6380d5c80a5c787007245b13 214 SUPERFAMILY SSF74653 123 205 4.19E-26 T 12-10-2018 R615_12860 6b28297e6380d5c80a5c787007245b13 214 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 133 206 3.9E-17 T 12-10-2018 IPR006260 TonB/TolA, C-terminal R615_12860 6b28297e6380d5c80a5c787007245b13 214 Gene3D G3DSA:3.30.1150.10 115 212 3.5E-25 T 12-10-2018 R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 Gene3D G3DSA:3.90.180.10 13 317 1.5E-61 T 12-10-2018 R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 93 1.0E-5 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 SMART SM00829 14 318 1.8E-11 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 Gene3D G3DSA:3.40.50.720 131 269 1.5E-61 T 12-10-2018 R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 Pfam PF00107 Zinc-binding dehydrogenase 158 258 5.1E-9 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 SUPERFAMILY SSF50129 6 154 1.52E-31 T 12-10-2018 IPR011032 GroES-like superfamily R615_05400 5c8cdfa5e9db0e4c57f5ec1f856b7c95 320 SUPERFAMILY SSF51735 121 260 5.44E-25 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_03375 2e1dfeb7bc6f7208b174ce0584dfb9b4 273 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 239 33.13 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD R615_03375 2e1dfeb7bc6f7208b174ce0584dfb9b4 273 SUPERFAMILY SSF48452 30 117 1.52E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_03375 2e1dfeb7bc6f7208b174ce0584dfb9b4 273 Gene3D G3DSA:1.25.40.10 28 250 9.8E-51 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_03375 2e1dfeb7bc6f7208b174ce0584dfb9b4 273 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 3 243 7.6E-76 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD R615_03375 2e1dfeb7bc6f7208b174ce0584dfb9b4 273 Pfam PF13525 Outer membrane lipoprotein 26 231 1.5E-63 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like R615_04455 3402216a4924a49ba30ae43b7d5000af 141 Gene3D G3DSA:1.20.120.550 8 140 2.8E-10 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily R615_04455 3402216a4924a49ba30ae43b7d5000af 141 SUPERFAMILY SSF161084 11 133 2.35E-16 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily R615_04455 3402216a4924a49ba30ae43b7d5000af 141 Pfam PF01124 MAPEG family 10 136 6.7E-21 T 12-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein R615_12030 23fc3384d9ffc0b92c0da28c89fa3d58 411 Gene3D G3DSA:1.25.40.10 140 290 1.1E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12030 23fc3384d9ffc0b92c0da28c89fa3d58 411 SUPERFAMILY SSF48452 149 260 1.02E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12030 23fc3384d9ffc0b92c0da28c89fa3d58 411 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 1 116 1.1E-13 T 12-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 SUPERFAMILY SSF55021 329 404 2.75E-24 T 12-10-2018 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 Pfam PF00696 Amino acid kinase family 4 229 1.0E-49 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 PIRSF PIRSF000726 58 409 9.8E-143 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 PIRSF PIRSF000726 1 61 3.6E-20 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 Pfam PF13840 ACT domain 338 398 4.5E-15 T 12-10-2018 IPR027795 CASTOR, ACT domain R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 402 2.9E-118 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 Gene3D G3DSA:3.30.70.260 254 403 1.5E-57 T 12-10-2018 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 Gene3D G3DSA:3.30.70.260 261 338 1.5E-57 T 12-10-2018 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 Pfam PF01842 ACT domain 269 326 3.8E-10 T 12-10-2018 IPR002912 ACT domain R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 SUPERFAMILY SSF53633 4 241 2.75E-74 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 Gene3D G3DSA:3.40.1160.10 1 253 1.7E-90 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 402 2.0E-130 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 R615_14635 7c549cf4aaaeaaabaaed2b9c6e50af0a 410 SUPERFAMILY SSF55021 248 326 2.41E-18 T 12-10-2018 R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 SUPERFAMILY SSF52540 175 562 6.62E-101 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 Pfam PF00437 Type II/IV secretion system protein 194 455 1.9E-82 T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 SUPERFAMILY SSF160246 5 146 1.06E-38 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 Gene3D G3DSA:3.30.450.90 124 288 3.0E-46 T 12-10-2018 R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 383 397 - T 12-10-2018 IPR001482 Type II/IV secretion system protein R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 Gene3D G3DSA:3.40.50.300 292 569 5.0E-106 T 12-10-2018 R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 SMART SM00382 316 441 7.7E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02830 08597771f3a4eea0c4cad3ed4a53a399 571 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 46 150 1.0E-23 T 12-10-2018 IPR007831 General secretory system II, protein E, N-terminal R615_12080 8033bcbeddfeac6a03992eb8869c154b 94 Gene3D G3DSA:3.40.1690.10 10 88 6.9E-23 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal R615_12080 8033bcbeddfeac6a03992eb8869c154b 94 SUPERFAMILY SSF160544 12 87 3.92E-21 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal R615_12080 8033bcbeddfeac6a03992eb8869c154b 94 Pfam PF01312 FlhB HrpN YscU SpaS Family 13 83 3.0E-17 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 R615_03805 b0b2e00fcccc0471bae09906d049f663 387 SUPERFAMILY SSF56796 2 387 5.1E-117 T 12-10-2018 R615_03805 b0b2e00fcccc0471bae09906d049f663 387 Gene3D G3DSA:1.20.1090.10 186 387 1.2E-65 T 12-10-2018 R615_03805 b0b2e00fcccc0471bae09906d049f663 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 378 1.1E-113 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 R615_03805 b0b2e00fcccc0471bae09906d049f663 387 Gene3D G3DSA:3.40.50.1970 1 185 7.3E-50 T 12-10-2018 R615_03805 b0b2e00fcccc0471bae09906d049f663 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 R615_00885 9e5a220534cd998c76a5442819989a00 207 SMART SM00072 6 188 3.8E-70 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit R615_00885 9e5a220534cd998c76a5442819989a00 207 SUPERFAMILY SSF52540 5 190 9.96E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00885 9e5a220534cd998c76a5442819989a00 207 Gene3D G3DSA:3.40.50.300 11 184 6.2E-72 T 12-10-2018 R615_00885 9e5a220534cd998c76a5442819989a00 207 Pfam PF00625 Guanylate kinase 9 184 1.2E-57 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit R615_00885 9e5a220534cd998c76a5442819989a00 207 Gene3D G3DSA:3.30.63.10 38 97 6.2E-72 T 12-10-2018 R615_00885 9e5a220534cd998c76a5442819989a00 207 Hamap MF_00328 Guanylate kinase [gmk]. 5 188 36.88 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 R615_00885 9e5a220534cd998c76a5442819989a00 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 41 58 - T 12-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 R615_00885 9e5a220534cd998c76a5442819989a00 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 7 185 7.4E-76 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 269 3.9E-81 T 12-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 Gene3D G3DSA:3.40.50.720 117 237 7.9E-82 T 12-10-2018 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 Gene3D G3DSA:3.40.50.10860 5 256 7.9E-82 T 12-10-2018 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 SUPERFAMILY SSF53223 2 102 2.88E-30 T 12-10-2018 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 4.0E-23 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 118 193 5.2E-11 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 271 31.041 T 12-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 R615_00575 4cd5834bd6d903505b7ff820f0942deb 275 SUPERFAMILY SSF51735 103 269 1.39E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_12500 dc602ba94620a0d014e56a272879f775 119 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 112 1.7E-4 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain R615_12500 dc602ba94620a0d014e56a272879f775 119 SUPERFAMILY SSF54593 6 117 4.68E-21 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase R615_12500 dc602ba94620a0d014e56a272879f775 119 Gene3D G3DSA:3.10.180.10 1 117 1.5E-17 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 Gene3D G3DSA:3.40.50.790 68 159 2.1E-76 T 12-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 Gene3D G3DSA:3.30.190.20 21 224 2.1E-76 T 12-10-2018 R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 12-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 SUPERFAMILY SSF56808 6 226 1.96E-78 T 12-10-2018 IPR023674 Ribosomal protein L1-like R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 PIRSF PIRSF002155 1 227 4.3E-76 T 12-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.5E-99 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.488 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 R615_16230 e7c60166e5e88ea9c55b1d32513099a4 231 Pfam PF00687 Ribosomal protein L1p/L10e family 36 220 5.0E-47 T 12-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 PRINTS PR00723 Subtilisin serine protease family (S8) signature 235 248 2.6E-12 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 PRINTS PR00723 Subtilisin serine protease family (S8) signature 392 408 2.6E-12 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 PRINTS PR00723 Subtilisin serine protease family (S8) signature 193 212 2.6E-12 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 SUPERFAMILY SSF52743 180 424 2.88E-51 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 Gene3D G3DSA:3.40.50.200 158 430 1.4E-50 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 198 209 - T 12-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site R615_16425 2d2a5e2fc2aef4a1fafe99df29fcfc50 445 Pfam PF00082 Subtilase family 193 420 1.1E-30 T 12-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 R615_16220 66a4973baf390a33c9d48505bf749350 124 Gene3D G3DSA:3.30.1390.10 54 124 1.3E-28 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like R615_16220 66a4973baf390a33c9d48505bf749350 124 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 103 7.0E-13 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16220 66a4973baf390a33c9d48505bf749350 124 Gene3D G3DSA:1.20.5.710 2 53 1.3E-22 T 12-10-2018 R615_16220 66a4973baf390a33c9d48505bf749350 124 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 58 124 1.7E-29 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16220 66a4973baf390a33c9d48505bf749350 124 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 124 1.7E-47 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16220 66a4973baf390a33c9d48505bf749350 124 SUPERFAMILY SSF54736 54 124 8.2E-24 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like R615_16220 66a4973baf390a33c9d48505bf749350 124 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 52 1.2E-16 T 12-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16220 66a4973baf390a33c9d48505bf749350 124 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 124 24.139 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16220 66a4973baf390a33c9d48505bf749350 124 SUPERFAMILY SSF48300 4 60 1.57E-15 T 12-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 Gene3D G3DSA:3.60.15.10 10 429 8.9E-133 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 Gene3D G3DSA:3.40.50.10890 220 396 8.9E-133 T 12-10-2018 R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 Pfam PF10996 Beta-Casp domain 255 370 1.3E-24 T 12-10-2018 IPR022712 Beta-Casp domain R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 383 447 1.5E-14 T 12-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 SMART SM00849 17 235 2.2E-16 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 Pfam PF00753 Metallo-beta-lactamase superfamily 20 200 3.8E-17 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 SUPERFAMILY SSF56281 6 452 3.54E-120 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_04100 52e1f336b431ae6cc30b4cd8d071932d 456 SMART SM01027 251 370 4.4E-48 T 12-10-2018 IPR022712 Beta-Casp domain R615_17200 e7d363fb55594999d359afa425a9ebb6 266 SUPERFAMILY SSF69618 15 261 1.05E-45 T 12-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17200 e7d363fb55594999d359afa425a9ebb6 266 Gene3D G3DSA:3.40.50.10090 16 252 1.6E-67 T 12-10-2018 R615_17200 e7d363fb55594999d359afa425a9ebb6 266 Pfam PF02602 Uroporphyrinogen-III synthase HemD 26 254 4.5E-31 T 12-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 R615_17200 e7d363fb55594999d359afa425a9ebb6 266 Gene3D G3DSA:3.40.50.10090 45 184 1.6E-67 T 12-10-2018 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 5 364 1.8E-102 T 12-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 SMART SM00382 26 217 1.4E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 Pfam PF03459 TOBE domain 320 364 4.4E-7 T 12-10-2018 IPR005116 Transport-associated OB, type 1 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 Gene3D G3DSA:3.40.50.300 4 238 9.3E-56 T 12-10-2018 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 SUPERFAMILY SSF52540 9 229 2.77E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 Gene3D G3DSA:2.40.50.100 301 365 2.8E-9 T 12-10-2018 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 Pfam PF00005 ABC transporter 19 168 6.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_03775 65e8a3edcd119a5351d74f507e54a50c 366 SUPERFAMILY SSF50331 245 364 3.89E-11 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal R615_03480 6d7e679bec75ca38198e88ff91e96505 520 Pfam PF00005 ABC transporter 329 459 2.7E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_03480 6d7e679bec75ca38198e88ff91e96505 520 Pfam PF00005 ABC transporter 10 176 1.0E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_03480 6d7e679bec75ca38198e88ff91e96505 520 Gene3D G3DSA:3.40.50.300 2 271 2.4E-54 T 12-10-2018 R615_03480 6d7e679bec75ca38198e88ff91e96505 520 Gene3D G3DSA:3.40.50.300 274 520 3.3E-52 T 12-10-2018 R615_03480 6d7e679bec75ca38198e88ff91e96505 520 SMART SM00382 336 504 8.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_03480 6d7e679bec75ca38198e88ff91e96505 520 SMART SM00382 18 230 5.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_03480 6d7e679bec75ca38198e88ff91e96505 520 SUPERFAMILY SSF52540 3 230 2.35E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03480 6d7e679bec75ca38198e88ff91e96505 520 Pfam PF12848 ABC transporter 216 292 1.9E-19 T 12-10-2018 IPR032781 ABC-transporter extension domain R615_03480 6d7e679bec75ca38198e88ff91e96505 520 SUPERFAMILY SSF52540 294 515 6.54E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03480 6d7e679bec75ca38198e88ff91e96505 520 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_13135 6b9bb7e1836a7d94a156b695cd0ae1f5 297 Gene3D G3DSA:2.60.200.40 127 286 1.3E-31 T 12-10-2018 R615_13135 6b9bb7e1836a7d94a156b695cd0ae1f5 297 SUPERFAMILY SSF111331 3 295 1.94E-64 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily R615_13135 6b9bb7e1836a7d94a156b695cd0ae1f5 297 SMART SM00046 3 126 1.7E-4 T 12-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 R615_13135 6b9bb7e1836a7d94a156b695cd0ae1f5 297 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 3 295 1.5E-42 T 12-10-2018 IPR005218 Diacylglycerol/lipid kinase R615_13135 6b9bb7e1836a7d94a156b695cd0ae1f5 297 Gene3D G3DSA:3.40.50.10330 1 126 1.1E-32 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 R615_13135 6b9bb7e1836a7d94a156b695cd0ae1f5 297 Pfam PF00781 Diacylglycerol kinase catalytic domain 3 121 1.5E-25 T 12-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 R615_00975 015a334fc22929a2bbe90642df99ad64 573 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 43 561 5.3E-143 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 R615_00975 015a334fc22929a2bbe90642df99ad64 573 Pfam PF01019 Gamma-glutamyltranspeptidase 56 562 3.7E-163 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 Gene3D G3DSA:3.60.20.40 380 562 4.6E-58 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 SUPERFAMILY SSF56235 41 567 3.28E-164 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_00975 015a334fc22929a2bbe90642df99ad64 573 Gene3D G3DSA:1.10.246.130 269 376 4.6E-31 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 155 174 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 468 485 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 137 155 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 283 302 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 380 398 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 63 88 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 404 422 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 253 269 3.4E-69 T 12-10-2018 R615_00975 015a334fc22929a2bbe90642df99ad64 573 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 445 460 3.4E-69 T 12-10-2018 R615_13335 6d1eda5b835d1905467397c8f3ee5cc9 502 Gene3D G3DSA:3.60.110.10 203 475 7.7E-17 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_13335 6d1eda5b835d1905467397c8f3ee5cc9 502 Pfam PF00795 Carbon-nitrogen hydrolase 214 464 1.5E-31 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 R615_13335 6d1eda5b835d1905467397c8f3ee5cc9 502 SUPERFAMILY SSF56317 210 482 3.79E-42 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_13335 6d1eda5b835d1905467397c8f3ee5cc9 502 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 6 487 21.672 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 R615_13335 6d1eda5b835d1905467397c8f3ee5cc9 502 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 60 449 2.7E-91 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 R615_09320 4be24b548a90ba37563d5529a74d91cf 61 Pfam PF01783 Ribosomal L32p protein family 2 57 1.6E-18 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_09320 4be24b548a90ba37563d5529a74d91cf 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 57 2.1E-17 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_09320 4be24b548a90ba37563d5529a74d91cf 61 SUPERFAMILY SSF57829 2 57 7.94E-17 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 R615_09320 4be24b548a90ba37563d5529a74d91cf 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 56 16.161 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_01360 34ece832f524c81badc2539c4c2af048 258 Gene3D G3DSA:3.40.30.10 3 97 7.1E-10 T 12-10-2018 R615_01360 34ece832f524c81badc2539c4c2af048 258 SUPERFAMILY SSF52833 7 93 1.32E-12 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_01360 34ece832f524c81badc2539c4c2af048 258 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 82 7.6E-11 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_01360 34ece832f524c81badc2539c4c2af048 258 SUPERFAMILY SSF47616 138 206 2.51E-10 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily R615_01360 34ece832f524c81badc2539c4c2af048 258 Gene3D G3DSA:1.20.1050.10 117 227 2.8E-9 T 12-10-2018 R615_01360 34ece832f524c81badc2539c4c2af048 258 Pfam PF13410 Glutathione S-transferase, C-terminal domain 162 205 5.0E-8 T 12-10-2018 R615_11775 ac0f279e9fa00839e114df6dca8a682b 280 Pfam PF01694 Rhomboid family 134 270 2.3E-24 T 12-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 R615_11775 ac0f279e9fa00839e114df6dca8a682b 280 Pfam PF16733 Rhomboid N-terminal domain 1 68 2.0E-25 T 12-10-2018 IPR031976 Rhomboid protease, N-terminal R615_11775 ac0f279e9fa00839e114df6dca8a682b 280 SUPERFAMILY SSF144091 85 275 3.27E-32 T 12-10-2018 R615_11775 ac0f279e9fa00839e114df6dca8a682b 280 Gene3D G3DSA:1.20.1540.10 79 277 2.8E-39 T 12-10-2018 IPR035952 Rhomboid-like superfamily R615_11775 ac0f279e9fa00839e114df6dca8a682b 280 Gene3D G3DSA:3.30.70.2080 1 53 1.0E-6 T 12-10-2018 IPR038244 Rhomboid protease, N-terminal domain superfamily R615_06295 33ab5ec0fb97c4a73b3c79d859e4d845 193 Gene3D G3DSA:2.20.70.110 153 189 1.4E-18 T 12-10-2018 R615_06295 33ab5ec0fb97c4a73b3c79d859e4d845 193 SUPERFAMILY SSF51161 5 158 6.65E-43 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_06295 33ab5ec0fb97c4a73b3c79d859e4d845 193 Gene3D G3DSA:2.160.10.10 4 151 2.2E-46 T 12-10-2018 R615_06295 33ab5ec0fb97c4a73b3c79d859e4d845 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 102 136 8.2E-6 T 12-10-2018 IPR001451 Hexapeptide repeat R615_06295 33ab5ec0fb97c4a73b3c79d859e4d845 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 49 3.4E-7 T 12-10-2018 IPR001451 Hexapeptide repeat R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 5.4E-60 T 12-10-2018 R615_13850 907e6e087529e980b5b6fba60b014a90 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_13850 907e6e087529e980b5b6fba60b014a90 252 SUPERFAMILY SSF51735 4 250 3.94E-76 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 4.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_13850 907e6e087529e980b5b6fba60b014a90 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 193 1.6E-4 T 12-10-2018 R615_13850 907e6e087529e980b5b6fba60b014a90 252 Gene3D G3DSA:3.40.50.720 1 252 5.6E-79 T 12-10-2018 R615_04775 564a22cd7f0c2b0e4456c739376e46b5 150 SMART SM01321 15 129 1.3E-24 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_04775 564a22cd7f0c2b0e4456c739376e46b5 150 Pfam PF01797 Transposase IS200 like 19 128 1.5E-14 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_04775 564a22cd7f0c2b0e4456c739376e46b5 150 SUPERFAMILY SSF143422 8 135 1.96E-26 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_04775 564a22cd7f0c2b0e4456c739376e46b5 150 Gene3D G3DSA:3.30.70.1290 8 150 5.3E-31 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_16530 78825f4712ba2c2481f8e9f69ab69706 199 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 197 1.0E-58 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 R615_16530 78825f4712ba2c2481f8e9f69ab69706 199 SUPERFAMILY SSF52972 2 197 3.14E-67 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like R615_16530 78825f4712ba2c2481f8e9f69ab69706 199 Pfam PF01725 Ham1 family 5 195 1.5E-56 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 R615_16530 78825f4712ba2c2481f8e9f69ab69706 199 Hamap MF_01405 dITP/XTP pyrophosphatase. 3 196 45.725 T 12-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 R615_16530 78825f4712ba2c2481f8e9f69ab69706 199 Gene3D G3DSA:3.90.950.10 1 198 1.0E-73 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like R615_03465 4fab3a01fa900e1b4e7114a653755077 221 Gene3D G3DSA:1.10.760.10 55 130 2.5E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_03465 4fab3a01fa900e1b4e7114a653755077 221 Pfam PF00034 Cytochrome c 144 220 2.5E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_03465 4fab3a01fa900e1b4e7114a653755077 221 Gene3D G3DSA:1.10.760.10 141 219 5.3E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_03465 4fab3a01fa900e1b4e7114a653755077 221 SUPERFAMILY SSF46626 144 220 3.15E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_03465 4fab3a01fa900e1b4e7114a653755077 221 SUPERFAMILY SSF46626 55 129 1.59E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_02190 a569227bf41f896fdf1511944bc4eeb1 358 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 12 356 2.2E-100 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 R615_02190 a569227bf41f896fdf1511944bc4eeb1 358 SUPERFAMILY SSF53383 15 358 5.98E-74 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_02190 a569227bf41f896fdf1511944bc4eeb1 358 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 358 56.194 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 R615_02190 a569227bf41f896fdf1511944bc4eeb1 358 Gene3D G3DSA:3.40.640.10 50 262 1.1E-113 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_02190 a569227bf41f896fdf1511944bc4eeb1 358 Pfam PF00155 Aminotransferase class I and II 29 353 2.2E-49 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 R615_02190 a569227bf41f896fdf1511944bc4eeb1 358 Gene3D G3DSA:3.90.1150.10 21 351 1.1E-113 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_13685 cbb33a0b107ba1985b0935c0e123ac98 160 Gene3D G3DSA:3.40.50.960 3 159 1.6E-47 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_13685 cbb33a0b107ba1985b0935c0e123ac98 160 SUPERFAMILY SSF52121 8 156 3.53E-42 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_13685 cbb33a0b107ba1985b0935c0e123ac98 160 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 157 20.838 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_13685 cbb33a0b107ba1985b0935c0e123ac98 160 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 14 147 1.5E-35 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_03245 2be9a7f7711e18b7bbb3596c15c11a39 322 Pfam PF00348 Polyprenyl synthetase 31 263 1.3E-77 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 R615_03245 2be9a7f7711e18b7bbb3596c15c11a39 322 SUPERFAMILY SSF48576 4 321 1.6E-98 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily R615_03245 2be9a7f7711e18b7bbb3596c15c11a39 322 Gene3D G3DSA:1.10.600.10 1 322 1.7E-111 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily R615_03245 2be9a7f7711e18b7bbb3596c15c11a39 322 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site R615_03245 2be9a7f7711e18b7bbb3596c15c11a39 322 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site R615_01825 5ef19727ef50e6cc2b6bf7cd40f9bd97 242 SUPERFAMILY SSF143422 3 125 1.7E-26 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_01825 5ef19727ef50e6cc2b6bf7cd40f9bd97 242 Pfam PF01797 Transposase IS200 like 12 122 1.2E-11 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_01825 5ef19727ef50e6cc2b6bf7cd40f9bd97 242 Gene3D G3DSA:3.30.70.1290 1 161 9.0E-32 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_01825 5ef19727ef50e6cc2b6bf7cd40f9bd97 242 SMART SM01321 9 124 7.9E-37 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 108 127 3.6E-14 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 348 362 3.6E-14 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 66 78 3.6E-14 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 325 347 3.6E-14 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 Pfam PF01555 DNA methylase 66 382 3.5E-39 T 12-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 69 75 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_13055 2d5606ade66aa4d8131b59cff105475f 422 SUPERFAMILY SSF53335 39 384 4.82E-53 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_13055 2d5606ade66aa4d8131b59cff105475f 422 PIRSF PIRSF015855 10 415 9.3E-99 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 SMART SM00448 4 117 2.7E-40 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 Pfam PF00072 Response regulator receiver domain 6 118 9.6E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 SMART SM00862 151 226 4.7E-28 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 Gene3D G3DSA:3.40.50.2300 2 130 1.1E-38 T 12-10-2018 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 1.7E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 Gene3D G3DSA:1.10.10.10 131 228 2.3E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 5 226 4.2E-95 T 12-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 SUPERFAMILY SSF46894 129 227 3.97E-29 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_00755 426b291ec1b126a567aa3e36cf5cbbda 235 SUPERFAMILY SSF52172 2 130 8.68E-43 T 12-10-2018 IPR011006 CheY-like superfamily R615_11370 9160eb64e6ed7ee44aceb42a2e28e926 79 SUPERFAMILY SSF52833 1 78 1.42E-19 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11370 9160eb64e6ed7ee44aceb42a2e28e926 79 Gene3D G3DSA:3.40.30.10 2 79 6.8E-14 T 12-10-2018 R615_11370 9160eb64e6ed7ee44aceb42a2e28e926 79 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 78 1.2E-10 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 R615_11370 9160eb64e6ed7ee44aceb42a2e28e926 79 ProSitePatterns PS00195 Glutaredoxin active site. 5 21 - T 12-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 R615_08675 98e2bf39c047fbe110810a9cb09c7d71 124 TIGRFAM TIGR00494 crcB: protein CrcB 4 119 2.0E-27 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 R615_08675 98e2bf39c047fbe110810a9cb09c7d71 124 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 4 116 1.6E-25 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 R615_08675 98e2bf39c047fbe110810a9cb09c7d71 124 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 121 18.474 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 R615_06960 9bd82606a349bf1bf5a25c3500f5a892 236 Pfam PF01618 MotA/TolQ/ExbB proton channel family 77 206 7.4E-43 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_06960 9bd82606a349bf1bf5a25c3500f5a892 236 TIGRFAM TIGR02796 tolQ: protein TolQ 6 217 2.0E-88 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 R615_06960 9bd82606a349bf1bf5a25c3500f5a892 236 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 224 41.634 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 R615_06205 63ca462def44fa51be23c83acffe93fa 222 Gene3D G3DSA:3.40.50.1000 9 194 2.5E-47 T 12-10-2018 IPR023214 HAD superfamily R615_06205 63ca462def44fa51be23c83acffe93fa 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 99 185 9.5E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_06205 63ca462def44fa51be23c83acffe93fa 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 186 3.6E-32 T 12-10-2018 R615_06205 63ca462def44fa51be23c83acffe93fa 222 Gene3D G3DSA:1.10.150.240 21 88 2.5E-47 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 R615_06205 63ca462def44fa51be23c83acffe93fa 222 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 94 181 1.9E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_06205 63ca462def44fa51be23c83acffe93fa 222 SUPERFAMILY SSF56784 7 217 4.57E-51 T 12-10-2018 IPR036412 HAD-like superfamily R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 Pfam PF04542 Sigma-70 region 2 54 123 2.7E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 Gene3D G3DSA:1.10.601.10 14 126 3.2E-27 T 12-10-2018 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 Gene3D G3DSA:1.20.140.160 131 285 1.3E-14 T 12-10-2018 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 PRINTS PR00046 Major sigma-70 factor signature 78 91 1.1E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 PRINTS PR00046 Major sigma-70 factor signature 252 267 1.1E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 PRINTS PR00046 Major sigma-70 factor signature 233 245 1.1E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 PRINTS PR00046 Major sigma-70 factor signature 267 278 1.1E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 SUPERFAMILY SSF88659 198 283 7.66E-18 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 Pfam PF04545 Sigma-70, region 4 229 279 1.3E-14 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 282 5.9E-34 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 SUPERFAMILY SSF88946 15 123 5.36E-39 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 16 283 8.0E-121 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 R615_00700 49bdbde7bff7cf5b7daf961f2b9567fd 289 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 50.763 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 Gene3D G3DSA:3.40.1380.10 61 205 8.8E-106 T 12-10-2018 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 272 285 - T 12-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 Pfam PF00231 ATP synthase 5 285 4.7E-94 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 SUPERFAMILY SSF52943 5 286 2.09E-92 T 12-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 PRINTS PR00126 ATP synthase gamma subunit signature 264 285 2.9E-37 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 2.9E-37 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 PRINTS PR00126 ATP synthase gamma subunit signature 233 252 2.9E-37 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 2.9E-37 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 286 1.6E-106 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 286 35.246 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 R615_17310 0eb3fe906e93e15a2cc862b674261b7b 286 Gene3D G3DSA:1.10.287.80 6 282 8.8E-106 T 12-10-2018 R615_16175 814e4bf9195b56c508463c1517ab4a81 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 3 200 33.409 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16175 814e4bf9195b56c508463c1517ab4a81 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 197 2.5E-63 T 12-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 R615_16175 814e4bf9195b56c508463c1517ab4a81 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 197 8.6E-74 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16175 814e4bf9195b56c508463c1517ab4a81 200 Gene3D G3DSA:3.40.1370.10 3 200 7.4E-67 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 R615_16175 814e4bf9195b56c508463c1517ab4a81 200 SUPERFAMILY SSF52166 7 199 3.4E-71 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 R615_11350 5f1bc0ec793f0a99d5b7774724174159 337 Pfam PF02371 Transposase IS116/IS110/IS902 family 212 290 8.3E-25 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 R615_11350 5f1bc0ec793f0a99d5b7774724174159 337 Pfam PF01548 Transposase 7 146 1.6E-13 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 R615_16715 17d7badb7f4f8e7191e99e197efb5213 232 SUPERFAMILY SSF52540 1 224 6.85E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16715 17d7badb7f4f8e7191e99e197efb5213 232 SMART SM00382 26 210 1.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_16715 17d7badb7f4f8e7191e99e197efb5213 232 Gene3D G3DSA:3.40.50.300 1 231 3.7E-60 T 12-10-2018 R615_16715 17d7badb7f4f8e7191e99e197efb5213 232 Pfam PF00005 ABC transporter 18 160 2.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_16715 17d7badb7f4f8e7191e99e197efb5213 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 231 7.0E-102 T 12-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE R615_06080 880d932a11f8d06e166ed1a56829d7e5 307 SUPERFAMILY SSF52151 3 292 5.23E-53 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase R615_06080 880d932a11f8d06e166ed1a56829d7e5 307 Gene3D G3DSA:3.40.1090.10 85 213 9.5E-18 T 12-10-2018 R615_06080 880d932a11f8d06e166ed1a56829d7e5 307 Gene3D G3DSA:3.40.1090.20 5 77 2.1E-8 T 12-10-2018 R615_06080 880d932a11f8d06e166ed1a56829d7e5 307 Pfam PF01734 Patatin-like phospholipase 7 165 1.7E-14 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 R615_10175 0f4f5a213cae9119cab79ec259dc6960 562 Pfam PF03929 PepSY-associated TM region 11 403 1.6E-60 T 12-10-2018 IPR005625 PepSY-associated TM protein R615_16440 f5070974e1483f93892e0d3bed8e1585 173 SUPERFAMILY SSF88874 1 167 2.88E-45 T 12-10-2018 R615_16440 f5070974e1483f93892e0d3bed8e1585 173 Gene3D G3DSA:3.90.1340.10 4 59 2.2E-14 T 12-10-2018 IPR037053 Phage tail collar domain superfamily R615_16440 f5070974e1483f93892e0d3bed8e1585 173 Pfam PF07484 Phage Tail Collar Domain 8 63 3.3E-25 T 12-10-2018 IPR011083 Phage tail collar domain R615_16315 d11bb55906bb5f67c66adbfb5df79eea 716 Pfam PF00593 TonB dependent receptor 190 711 1.1E-37 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_16315 d11bb55906bb5f67c66adbfb5df79eea 716 Gene3D G3DSA:2.170.130.10 47 166 8.5E-30 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_16315 d11bb55906bb5f67c66adbfb5df79eea 716 SUPERFAMILY SSF56935 35 716 3.83E-88 T 12-10-2018 R615_16315 d11bb55906bb5f67c66adbfb5df79eea 716 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 699 716 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site R615_16315 d11bb55906bb5f67c66adbfb5df79eea 716 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 159 6.8E-20 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_16315 d11bb55906bb5f67c66adbfb5df79eea 716 Gene3D G3DSA:2.40.170.20 167 716 2.8E-59 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_07510 3e20d1e577be0952da3a6a8afcb49908 182 Pfam PF07152 YaeQ protein 1 173 5.3E-78 T 12-10-2018 IPR009822 YaeQ R615_07510 3e20d1e577be0952da3a6a8afcb49908 182 PIRSF PIRSF011484 1 181 1.1E-73 T 12-10-2018 IPR009822 YaeQ R615_07510 3e20d1e577be0952da3a6a8afcb49908 182 Gene3D G3DSA:3.10.640.10 1 182 3.4E-80 T 12-10-2018 IPR038590 YaeQ superfamily R615_07510 3e20d1e577be0952da3a6a8afcb49908 182 SMART SM01322 1 176 3.8E-116 T 12-10-2018 IPR009822 YaeQ R615_07510 3e20d1e577be0952da3a6a8afcb49908 182 SUPERFAMILY SSF52980 4 178 3.22E-74 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 R615_02145 7d3702bfe72230bafa79f1af2ad3ee0b 318 Gene3D G3DSA:1.20.58.1130 9 203 7.0E-84 T 12-10-2018 R615_02145 7d3702bfe72230bafa79f1af2ad3ee0b 318 Gene3D G3DSA:1.20.1420.30 35 308 7.0E-84 T 12-10-2018 R615_02145 7d3702bfe72230bafa79f1af2ad3ee0b 318 Pfam PF01699 Sodium/calcium exchanger protein 7 144 1.1E-23 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 R615_02145 7d3702bfe72230bafa79f1af2ad3ee0b 318 Pfam PF01699 Sodium/calcium exchanger protein 171 314 5.7E-30 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 R615_02145 7d3702bfe72230bafa79f1af2ad3ee0b 318 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 6 310 1.2E-77 T 12-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 12-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 44.182 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 Pfam PF08442 ATP-grasp domain 2 203 2.8E-82 T 12-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 Gene3D G3DSA:3.40.50.261 240 388 1.2E-56 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 SUPERFAMILY SSF56059 1 238 8.44E-83 T 12-10-2018 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 Pfam PF00549 CoA-ligase 262 382 8.0E-25 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 SUPERFAMILY SSF52210 239 385 9.55E-54 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.1E-177 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 Gene3D G3DSA:3.30.1490.20 21 104 7.4E-96 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 Gene3D G3DSA:3.30.470.20 1 234 7.4E-96 T 12-10-2018 R615_09985 895dc138c52467ee6c2c3bedea44c9b8 388 PIRSF PIRSF001554 1 388 1.4E-156 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 R615_12390 5573315133c878b0cc7a283adb0553ee 79 Pfam PF04023 FeoA domain 5 76 2.6E-16 T 12-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 R615_12390 5573315133c878b0cc7a283adb0553ee 79 Gene3D G3DSA:2.30.30.90 8 79 1.4E-23 T 12-10-2018 IPR038157 Ferrous iron transporter, core domain R615_12390 5573315133c878b0cc7a283adb0553ee 79 SUPERFAMILY SSF50037 7 77 4.12E-18 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal R615_12390 5573315133c878b0cc7a283adb0553ee 79 SMART SM00899 4 77 8.3E-18 T 12-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 R615_13485 865afa397cfb07dc2f393c7452976c8e 428 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_13485 865afa397cfb07dc2f393c7452976c8e 428 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 427 50.139 T 12-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 R615_13485 865afa397cfb07dc2f393c7452976c8e 428 Gene3D G3DSA:3.40.640.10 63 333 4.7E-171 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_13485 865afa397cfb07dc2f393c7452976c8e 428 Gene3D G3DSA:3.90.1150.10 12 417 4.7E-171 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_13485 865afa397cfb07dc2f393c7452976c8e 428 SUPERFAMILY SSF53383 8 425 1.41E-134 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_13485 865afa397cfb07dc2f393c7452976c8e 428 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 425 5.0E-182 T 12-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 R615_13485 865afa397cfb07dc2f393c7452976c8e 428 Pfam PF00202 Aminotransferase class-III 25 424 5.9E-128 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_08430 c710f7a50a93ee5cc844ec475cab9e9d 354 Gene3D G3DSA:3.40.1750.20 204 268 6.0E-44 T 12-10-2018 R615_08430 c710f7a50a93ee5cc844ec475cab9e9d 354 Pfam PF01343 Peptidase family S49 164 311 1.2E-43 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 R615_08430 c710f7a50a93ee5cc844ec475cab9e9d 354 Gene3D G3DSA:3.90.226.10 107 303 6.0E-44 T 12-10-2018 R615_08430 c710f7a50a93ee5cc844ec475cab9e9d 354 Pfam PF08496 Peptidase family S49 N-terminal 2 160 8.1E-55 T 12-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 R615_08430 c710f7a50a93ee5cc844ec475cab9e9d 354 SUPERFAMILY SSF52096 97 301 2.59E-30 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_09910 e1e59fe5af295a759ee2a13af1d186f5 436 Gene3D G3DSA:3.40.350.10 2 146 1.2E-31 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal R615_09910 e1e59fe5af295a759ee2a13af1d186f5 436 Pfam PF01321 Creatinase/Prolidase N-terminal domain 17 152 8.7E-21 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 R615_09910 e1e59fe5af295a759ee2a13af1d186f5 436 Pfam PF00557 Metallopeptidase family M24 160 370 8.8E-33 T 12-10-2018 IPR000994 Peptidase M24 R615_09910 e1e59fe5af295a759ee2a13af1d186f5 436 Gene3D G3DSA:3.90.230.10 151 386 4.8E-44 T 12-10-2018 R615_09910 e1e59fe5af295a759ee2a13af1d186f5 436 SUPERFAMILY SSF55920 153 383 1.31E-51 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like R615_09910 e1e59fe5af295a759ee2a13af1d186f5 436 SUPERFAMILY SSF53092 6 151 8.37E-35 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal R615_04675 c2c9b72a5560af2429267468e38c9c91 840 SUPERFAMILY SSF52540 294 551 3.2E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Pfam PF04851 Type III restriction enzyme, res subunit 166 347 1.6E-43 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 R615_04675 c2c9b72a5560af2429267468e38c9c91 840 SMART SM00487 162 382 5.6E-19 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_04675 c2c9b72a5560af2429267468e38c9c91 840 SUPERFAMILY SSF52540 152 384 2.21E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Pfam PF08463 EcoEI R protein C-terminal 676 835 3.0E-24 T 12-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Gene3D G3DSA:3.40.50.300 145 364 2.0E-70 T 12-10-2018 R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Pfam PF00271 Helicase conserved C-terminal domain 433 547 2.4E-6 T 12-10-2018 IPR001650 Helicase, C-terminal R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Gene3D G3DSA:3.90.1570.30 1 143 6.0E-47 T 12-10-2018 R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Gene3D G3DSA:3.40.50.300 365 587 1.3E-56 T 12-10-2018 R615_04675 c2c9b72a5560af2429267468e38c9c91 840 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 31 112 7.2E-10 T 12-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain R615_10015 d0edf84d9c0d938da2786deafc70778a 115 PIRSF PIRSF000169 1 115 1.4E-44 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 R615_10015 d0edf84d9c0d938da2786deafc70778a 115 SUPERFAMILY SSF81343 5 114 4.14E-30 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10015 d0edf84d9c0d938da2786deafc70778a 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 9.6E-38 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 R615_10015 d0edf84d9c0d938da2786deafc70778a 115 Gene3D G3DSA:1.20.1300.10 1 115 1.7E-33 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10015 d0edf84d9c0d938da2786deafc70778a 115 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 106 1.5E-7 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_12210 6316c399dee5123afbc249076540ad80 380 SUPERFAMILY SSF69593 85 191 5.23E-7 T 12-10-2018 R615_12210 6316c399dee5123afbc249076540ad80 380 Pfam PF01553 Acyltransferase 88 191 1.1E-7 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_06430 b270c920cb26387d5c847c991ed6efd5 910 Pfam PF07715 TonB-dependent Receptor Plug Domain 134 235 3.7E-15 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_06430 b270c920cb26387d5c847c991ed6efd5 910 Gene3D G3DSA:2.40.170.20 252 909 1.2E-49 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_06430 b270c920cb26387d5c847c991ed6efd5 910 SUPERFAMILY SSF56935 102 908 1.03E-91 T 12-10-2018 R615_06430 b270c920cb26387d5c847c991ed6efd5 910 SUPERFAMILY SSF49452 27 104 3.92E-10 T 12-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 R615_06430 b270c920cb26387d5c847c991ed6efd5 910 Pfam PF00593 TonB dependent receptor 437 908 1.4E-41 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_06430 b270c920cb26387d5c847c991ed6efd5 910 Gene3D G3DSA:2.170.130.10 116 238 1.3E-14 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_06430 b270c920cb26387d5c847c991ed6efd5 910 Gene3D G3DSA:2.60.40.1120 29 106 2.6E-10 T 12-10-2018 R615_06430 b270c920cb26387d5c847c991ed6efd5 910 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 112 908 5.3E-175 T 12-10-2018 IPR010104 Bacterial TonB-dependent receptor R615_06430 b270c920cb26387d5c847c991ed6efd5 910 Pfam PF13620 Carboxypeptidase regulatory-like domain 28 104 5.4E-12 T 12-10-2018 R615_07075 489053c266bb98cca37b4d4e485a0d4b 277 Pfam PF00483 Nucleotidyl transferase 10 268 2.9E-28 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 R615_07075 489053c266bb98cca37b4d4e485a0d4b 277 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 265 2.4E-116 T 12-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 R615_07075 489053c266bb98cca37b4d4e485a0d4b 277 SUPERFAMILY SSF53448 1 272 6.76E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_07075 489053c266bb98cca37b4d4e485a0d4b 277 Gene3D G3DSA:3.90.550.10 1 276 8.0E-77 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_14805 7b3d9ed926950763f302ae43cc413449 94 Gene3D G3DSA:1.10.3340.10 1 94 2.7E-45 T 12-10-2018 IPR036810 SMc04008-like superfamily R615_14805 7b3d9ed926950763f302ae43cc413449 94 Pfam PF06844 Protein of unknown function (DUF1244) 24 89 8.3E-37 T 12-10-2018 IPR023163 SMc04008-like domain R615_14805 7b3d9ed926950763f302ae43cc413449 94 SUPERFAMILY SSF158757 2 74 5.75E-36 T 12-10-2018 IPR036810 SMc04008-like superfamily R615_09510 f313569d271554c26c19dbf829b97f6f 319 Pfam PF16031 TonB N-terminal region 69 169 1.7E-8 T 12-10-2018 R615_07735 bf4326128596c2feeac8b8ec0fedfff6 201 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 4 175 4.2E-82 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO R615_07735 bf4326128596c2feeac8b8ec0fedfff6 201 Gene3D G3DSA:1.10.760.10 40 201 2.0E-75 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_07735 bf4326128596c2feeac8b8ec0fedfff6 201 SUPERFAMILY SSF46626 13 195 1.61E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_07735 bf4326128596c2feeac8b8ec0fedfff6 201 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 178 1.3E-80 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO R615_05865 208aa8d78ced7b19e7fb8c08db8c96ef 134 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 128 3.2E-63 T 12-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 R615_05865 208aa8d78ced7b19e7fb8c08db8c96ef 134 Gene3D G3DSA:3.10.180.10 1 130 3.4E-46 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase R615_05865 208aa8d78ced7b19e7fb8c08db8c96ef 134 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 4.4E-24 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain R615_05865 208aa8d78ced7b19e7fb8c08db8c96ef 134 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 R615_05865 208aa8d78ced7b19e7fb8c08db8c96ef 134 SUPERFAMILY SSF54593 1 128 4.03E-36 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase R615_09735 8b747afaffe28fa99afa57233b97326e 245 Gene3D G3DSA:3.40.50.150 1 170 3.7E-43 T 12-10-2018 R615_09735 8b747afaffe28fa99afa57233b97326e 245 SUPERFAMILY SSF53335 8 102 7.68E-6 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_09735 8b747afaffe28fa99afa57233b97326e 245 Pfam PF12847 Methyltransferase domain 3 163 4.0E-24 T 12-10-2018 R615_09735 8b747afaffe28fa99afa57233b97326e 245 PIRSF PIRSF028234 1 233 6.0E-81 T 12-10-2018 IPR016876 Uncharacterised conserved protein UCP028234 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Gene3D G3DSA:3.30.70.3400 225 435 1.3E-41 T 12-10-2018 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Gene3D G3DSA:1.20.1640.10 436 611 3.0E-14 T 12-10-2018 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 616 46.436 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Pfam PF07549 SecD/SecF GG Motif 121 141 1.6E-5 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 SUPERFAMILY SSF82866 331 606 3.66E-40 T 12-10-2018 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 124 601 6.6E-132 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Gene3D G3DSA:3.30.1360.200 281 432 1.3E-41 T 12-10-2018 R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Pfam PF02355 Protein export membrane protein 437 602 1.7E-19 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 342 594 2.1E-72 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial R615_10960 1345433e0be75098bb2c8f54b784e8ec 619 Pfam PF13721 SecD export protein N-terminal TM region 2 104 2.0E-31 T 12-10-2018 IPR027398 SecD export protein N-terminal TM domain R615_03795 cca856d7f8b93ad710aee960a7829892 425 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 325 410 3.3E-9 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_03795 cca856d7f8b93ad710aee960a7829892 425 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 193 289 2.8E-22 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_03795 cca856d7f8b93ad710aee960a7829892 425 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 190 214 - T 12-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_03795 cca856d7f8b93ad710aee960a7829892 425 Gene3D G3DSA:1.10.1040.50 195 418 1.4E-69 T 12-10-2018 R615_03795 cca856d7f8b93ad710aee960a7829892 425 SUPERFAMILY SSF48179 320 412 1.36E-22 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_03795 cca856d7f8b93ad710aee960a7829892 425 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 12 190 2.3E-61 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_03795 cca856d7f8b93ad710aee960a7829892 425 Gene3D G3DSA:3.40.50.720 1 192 7.1E-68 T 12-10-2018 R615_03795 cca856d7f8b93ad710aee960a7829892 425 SUPERFAMILY SSF51735 10 191 5.41E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_03795 cca856d7f8b93ad710aee960a7829892 425 SUPERFAMILY SSF48179 193 299 1.53E-20 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 Gene3D G3DSA:1.10.10.10 3 90 7.7E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 SUPERFAMILY SSF53850 95 292 4.52E-21 T 12-10-2018 R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 SUPERFAMILY SSF46785 2 84 1.92E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 Pfam PF03466 LysR substrate binding domain 95 292 5.4E-13 T 12-10-2018 IPR005119 LysR, substrate-binding R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 Gene3D G3DSA:3.40.190.10 169 262 3.6E-10 T 12-10-2018 R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.8E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_10940 63bfdf049d6d376237e98a915a15a8a0 307 Gene3D G3DSA:3.40.190.10 95 168 3.6E-10 T 12-10-2018 R615_03090 926c05c6f56b1b8ba58b5103440dccbe 386 Pfam PF13439 Glycosyltransferase Family 4 17 181 3.3E-18 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 R615_03090 926c05c6f56b1b8ba58b5103440dccbe 386 SUPERFAMILY SSF53756 5 365 9.87E-72 T 12-10-2018 R615_03090 926c05c6f56b1b8ba58b5103440dccbe 386 Gene3D G3DSA:3.40.50.2000 8 178 6.7E-66 T 12-10-2018 R615_03090 926c05c6f56b1b8ba58b5103440dccbe 386 Pfam PF00534 Glycosyl transferases group 1 195 338 4.1E-31 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 R615_03090 926c05c6f56b1b8ba58b5103440dccbe 386 Gene3D G3DSA:3.40.50.2000 179 356 6.7E-66 T 12-10-2018 R615_09485 c14d9ff49dcc7fe840a0540057704deb 290 Hamap MF_00697 UPF0276 protein . 13 281 43.918 T 12-10-2018 IPR007801 Uncharacterised protein family UPF0276 R615_09485 c14d9ff49dcc7fe840a0540057704deb 290 Pfam PF05114 Protein of unknown function (DUF692) 12 273 5.7E-100 T 12-10-2018 IPR007801 Uncharacterised protein family UPF0276 R615_09485 c14d9ff49dcc7fe840a0540057704deb 290 SUPERFAMILY SSF51658 19 265 4.35E-13 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily R615_09485 c14d9ff49dcc7fe840a0540057704deb 290 Gene3D G3DSA:3.20.20.150 9 284 1.4E-86 T 12-10-2018 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 SUPERFAMILY SSF50249 131 188 2.74E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 SMART SM00841 132 187 9.7E-35 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 ProSitePatterns PS01275 Elongation factor P signature. 153 172 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 3.3E-26 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Gene3D G3DSA:2.30.30.30 1 65 1.1E-27 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Gene3D G3DSA:2.40.50.140 131 188 4.4E-28 T 12-10-2018 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 SUPERFAMILY SSF50249 69 129 2.14E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 SMART SM01185 69 124 8.5E-20 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Gene3D G3DSA:2.40.50.140 66 128 1.5E-22 T 12-10-2018 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Hamap MF_00141 Elongation factor P [efp]. 3 188 46.72 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 1.9E-18 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 PIRSF PIRSF005901 2 188 1.0E-63 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 TIGRFAM TIGR00038 efp: translation elongation factor P 4 188 5.0E-74 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 Pfam PF09285 Elongation factor P, C-terminal 132 187 3.1E-27 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 R615_02395 bbdedf2daa673d631ed82566dd5f6367 188 SUPERFAMILY SSF50104 2 63 1.55E-20 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_11735 9d9351f14792cabe6ff48c70a31dc2a0 350 Pfam PF12833 Helix-turn-helix domain 258 334 3.9E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_11735 9d9351f14792cabe6ff48c70a31dc2a0 350 Gene3D G3DSA:1.10.10.60 233 346 6.6E-22 T 12-10-2018 R615_11735 9d9351f14792cabe6ff48c70a31dc2a0 350 SMART SM00342 251 333 2.4E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_11735 9d9351f14792cabe6ff48c70a31dc2a0 350 SUPERFAMILY SSF46689 287 338 6.27E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_11735 9d9351f14792cabe6ff48c70a31dc2a0 350 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 206 6.2E-37 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_05835 ce391bc345b922be6aaf05737e8d1834 297 Pfam PF03466 LysR substrate binding domain 88 294 7.5E-46 T 12-10-2018 IPR005119 LysR, substrate-binding R615_05835 ce391bc345b922be6aaf05737e8d1834 297 Gene3D G3DSA:3.40.190.290 91 297 4.6E-39 T 12-10-2018 R615_05835 ce391bc345b922be6aaf05737e8d1834 297 SUPERFAMILY SSF53850 90 294 4.64E-41 T 12-10-2018 R615_05835 ce391bc345b922be6aaf05737e8d1834 297 Gene3D G3DSA:1.10.10.10 1 85 4.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05835 ce391bc345b922be6aaf05737e8d1834 297 SUPERFAMILY SSF46785 1 111 9.08E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_05835 ce391bc345b922be6aaf05737e8d1834 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05610 ac0703c1dab9b50da12ff8dff1bde641 254 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 11 240 7.4E-95 T 12-10-2018 IPR017792 Urea carboxylase-associated protein 2 R615_05610 ac0703c1dab9b50da12ff8dff1bde641 254 Pfam PF09347 Domain of unknown function (DUF1989) 16 186 8.1E-54 T 12-10-2018 IPR018959 Protein of unknown function DUF1989 R615_07775 c0ae3f35a0864aca72a3751f8026d0ff 132 Pfam PF11325 Domain of unknown function (DUF3127) 6 98 5.6E-26 T 12-10-2018 IPR021474 Protein of unknown function DUF3127 R615_14170 c00dffa14f2c30d1384636b1250b8060 223 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 9 204 3.8E-30 T 12-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like R615_14170 c00dffa14f2c30d1384636b1250b8060 223 Pfam PF12710 haloacid dehalogenase-like hydrolase 9 192 2.9E-25 T 12-10-2018 R615_14170 c00dffa14f2c30d1384636b1250b8060 223 SUPERFAMILY SSF56784 7 213 2.52E-22 T 12-10-2018 IPR036412 HAD-like superfamily R615_14170 c00dffa14f2c30d1384636b1250b8060 223 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 8 194 2.1E-15 T 12-10-2018 R615_14170 c00dffa14f2c30d1384636b1250b8060 223 Gene3D G3DSA:1.20.1440.100 20 93 3.9E-48 T 12-10-2018 R615_14170 c00dffa14f2c30d1384636b1250b8060 223 Gene3D G3DSA:3.40.50.1000 9 217 3.9E-48 T 12-10-2018 IPR023214 HAD superfamily R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 Gene3D G3DSA:3.40.50.720 178 316 1.1E-156 T 12-10-2018 R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 Gene3D G3DSA:3.90.180.10 10 368 1.1E-156 T 12-10-2018 R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 SUPERFAMILY SSF50129 4 189 1.62E-75 T 12-10-2018 IPR011032 GroES-like superfamily R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 SUPERFAMILY SSF50129 322 373 4.14E-12 T 12-10-2018 IPR011032 GroES-like superfamily R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 65 79 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 6 373 2.4E-227 T 12-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 158 7.7E-25 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 SUPERFAMILY SSF51735 164 337 7.89E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 SMART SM00829 14 371 0.0017 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 R615_02545 7fb9d83bebd3ac6dc978c2031b45701b 373 Pfam PF00107 Zinc-binding dehydrogenase 201 326 3.7E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 SUPERFAMILY SSF88946 6 105 2.08E-20 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 Gene3D G3DSA:1.10.10.10 90 184 8.1E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 182 7.3E-24 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 Pfam PF08281 Sigma-70, region 4 127 177 6.9E-9 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 Gene3D G3DSA:1.10.1740.10 6 88 1.1E-23 T 12-10-2018 R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 Pfam PF04542 Sigma-70 region 2 24 92 8.5E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 R615_10530 1293b5f46b855e727f1eaa7ad2b8194b 192 SUPERFAMILY SSF88659 116 183 6.17E-12 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like R615_08390 06762aa216d429171897252e976e0cfe 516 SUPERFAMILY SSF54106 405 450 4.19E-11 T 12-10-2018 R615_08390 06762aa216d429171897252e976e0cfe 516 SUPERFAMILY SSF54106 465 512 3.92E-9 T 12-10-2018 R615_08390 06762aa216d429171897252e976e0cfe 516 SUPERFAMILY SSF54106 328 372 8.89E-11 T 12-10-2018 R615_08390 06762aa216d429171897252e976e0cfe 516 SUPERFAMILY SSF53955 97 249 1.15E-40 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily R615_08390 06762aa216d429171897252e976e0cfe 516 Gene3D G3DSA:1.10.530.10 95 244 7.9E-31 T 12-10-2018 R615_08390 06762aa216d429171897252e976e0cfe 516 Gene3D G3DSA:3.10.350.10 317 384 2.2E-15 T 12-10-2018 IPR036779 LysM domain superfamily R615_08390 06762aa216d429171897252e976e0cfe 516 Gene3D G3DSA:3.10.350.10 393 462 1.6E-16 T 12-10-2018 IPR036779 LysM domain superfamily R615_08390 06762aa216d429171897252e976e0cfe 516 Pfam PF01464 Transglycosylase SLT domain 108 209 4.9E-22 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 R615_08390 06762aa216d429171897252e976e0cfe 516 Pfam PF01476 LysM domain 467 509 3.0E-11 T 12-10-2018 IPR018392 LysM domain R615_08390 06762aa216d429171897252e976e0cfe 516 Pfam PF01476 LysM domain 330 372 5.9E-14 T 12-10-2018 IPR018392 LysM domain R615_08390 06762aa216d429171897252e976e0cfe 516 Pfam PF01476 LysM domain 407 450 2.2E-12 T 12-10-2018 IPR018392 LysM domain R615_08390 06762aa216d429171897252e976e0cfe 516 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 118 146 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 R615_08390 06762aa216d429171897252e976e0cfe 516 Gene3D G3DSA:3.10.350.10 464 513 2.0E-13 T 12-10-2018 IPR036779 LysM domain superfamily R615_08390 06762aa216d429171897252e976e0cfe 516 SMART SM00257 329 372 5.1E-13 T 12-10-2018 IPR018392 LysM domain R615_08390 06762aa216d429171897252e976e0cfe 516 SMART SM00257 406 450 4.1E-12 T 12-10-2018 IPR018392 LysM domain R615_08390 06762aa216d429171897252e976e0cfe 516 SMART SM00257 466 511 3.8E-8 T 12-10-2018 IPR018392 LysM domain R615_10995 cbe70bc63928ff460578ae72f153c929 647 SMART SM00267 472 646 5.1E-62 T 12-10-2018 IPR000160 GGDEF domain R615_10995 cbe70bc63928ff460578ae72f153c929 647 Gene3D G3DSA:3.30.70.270 469 647 3.4E-59 T 12-10-2018 R615_10995 cbe70bc63928ff460578ae72f153c929 647 Gene3D G3DSA:2.60.40.2380 41 185 1.5E-19 T 12-10-2018 R615_10995 cbe70bc63928ff460578ae72f153c929 647 Pfam PF07696 7TMR-DISM extracellular 2 47 178 3.4E-31 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_10995 cbe70bc63928ff460578ae72f153c929 647 SUPERFAMILY SSF55073 488 646 1.1E-48 T 12-10-2018 IPR029787 Nucleotide cyclase R615_10995 cbe70bc63928ff460578ae72f153c929 647 Pfam PF00990 Diguanylate cyclase, GGDEF domain 484 642 1.9E-48 T 12-10-2018 IPR000160 GGDEF domain R615_10995 cbe70bc63928ff460578ae72f153c929 647 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 479 645 1.8E-53 T 12-10-2018 IPR000160 GGDEF domain R615_10995 cbe70bc63928ff460578ae72f153c929 647 Pfam PF07695 7TM diverse intracellular signalling 193 393 3.3E-52 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_13580 86c0776d5ad2c3d0c2f4016a066483c9 166 Gene3D G3DSA:3.30.450.20 67 160 7.6E-8 T 12-10-2018 R615_13580 86c0776d5ad2c3d0c2f4016a066483c9 166 SUPERFAMILY SSF103190 34 166 2.35E-5 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily R615_13845 3c7b07945c0cce6f010c1da1a225e9a9 148 SMART SM00422 13 80 5.7E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_13845 3c7b07945c0cce6f010c1da1a225e9a9 148 SUPERFAMILY SSF46955 13 120 7.33E-19 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_13845 3c7b07945c0cce6f010c1da1a225e9a9 148 Pfam PF09278 MerR, DNA binding 54 120 1.4E-13 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding R615_13845 3c7b07945c0cce6f010c1da1a225e9a9 148 Gene3D G3DSA:1.10.1660.10 3 122 1.7E-21 T 12-10-2018 R615_16995 496707121ecaba3df647db4f95963a88 829 Pfam PF00512 His Kinase A (phospho-acceptor) domain 452 516 1.3E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_16995 496707121ecaba3df647db4f95963a88 829 SMART SM00448 701 815 7.1E-40 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_16995 496707121ecaba3df647db4f95963a88 829 Pfam PF00072 Response regulator receiver domain 703 815 9.9E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_16995 496707121ecaba3df647db4f95963a88 829 SUPERFAMILY SSF47384 436 517 7.46E-22 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_16995 496707121ecaba3df647db4f95963a88 829 SMART SM00091 310 376 4.7E-8 T 12-10-2018 IPR000014 PAS domain R615_16995 496707121ecaba3df647db4f95963a88 829 SMART SM00091 190 257 95.0 T 12-10-2018 IPR000014 PAS domain R615_16995 496707121ecaba3df647db4f95963a88 829 SMART SM00388 451 516 1.0E-23 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_16995 496707121ecaba3df647db4f95963a88 829 PRINTS PR00344 Bacterial sensor protein C-terminal signature 663 676 2.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16995 496707121ecaba3df647db4f95963a88 829 PRINTS PR00344 Bacterial sensor protein C-terminal signature 639 657 2.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16995 496707121ecaba3df647db4f95963a88 829 PRINTS PR00344 Bacterial sensor protein C-terminal signature 622 632 2.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16995 496707121ecaba3df647db4f95963a88 829 PRINTS PR00344 Bacterial sensor protein C-terminal signature 604 618 2.9E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_16995 496707121ecaba3df647db4f95963a88 829 SUPERFAMILY SSF55785 295 422 8.05E-13 T 12-10-2018 IPR035965 PAS domain superfamily R615_16995 496707121ecaba3df647db4f95963a88 829 Gene3D G3DSA:1.10.287.130 422 514 3.4E-28 T 12-10-2018 R615_16995 496707121ecaba3df647db4f95963a88 829 Gene3D G3DSA:3.30.565.10 515 681 2.6E-50 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_16995 496707121ecaba3df647db4f95963a88 829 SUPERFAMILY SSF55785 183 296 2.97E-6 T 12-10-2018 IPR035965 PAS domain superfamily R615_16995 496707121ecaba3df647db4f95963a88 829 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 308 431 4.0E-7 T 12-10-2018 IPR000014 PAS domain R615_16995 496707121ecaba3df647db4f95963a88 829 Pfam PF08448 PAS fold 316 424 8.6E-11 T 12-10-2018 IPR013656 PAS fold-4 R615_16995 496707121ecaba3df647db4f95963a88 829 Pfam PF08448 PAS fold 197 300 9.2E-6 T 12-10-2018 IPR013656 PAS fold-4 R615_16995 496707121ecaba3df647db4f95963a88 829 Gene3D G3DSA:3.40.50.12740 700 828 1.6E-42 T 12-10-2018 R615_16995 496707121ecaba3df647db4f95963a88 829 SMART SM00387 563 679 3.1E-38 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_16995 496707121ecaba3df647db4f95963a88 829 SUPERFAMILY SSF52172 701 820 2.7E-37 T 12-10-2018 IPR011006 CheY-like superfamily R615_16995 496707121ecaba3df647db4f95963a88 829 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 563 677 2.4E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_16995 496707121ecaba3df647db4f95963a88 829 Gene3D G3DSA:3.30.450.20 179 296 5.7E-6 T 12-10-2018 R615_16995 496707121ecaba3df647db4f95963a88 829 Gene3D G3DSA:3.30.450.20 297 421 9.8E-12 T 12-10-2018 R615_16995 496707121ecaba3df647db4f95963a88 829 SUPERFAMILY SSF55874 505 677 4.06E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_00600 139ea9c99023f001a98f22ec9a14c60d 352 Gene3D G3DSA:3.10.350.10 31 77 8.0E-15 T 12-10-2018 IPR036779 LysM domain superfamily R615_00600 139ea9c99023f001a98f22ec9a14c60d 352 SMART SM00257 32 80 0.0079 T 12-10-2018 IPR018392 LysM domain R615_00600 139ea9c99023f001a98f22ec9a14c60d 352 SUPERFAMILY SSF54106 31 78 2.88E-7 T 12-10-2018 R615_00600 139ea9c99023f001a98f22ec9a14c60d 352 Pfam PF01476 LysM domain 33 77 1.1E-12 T 12-10-2018 IPR018392 LysM domain R615_15460 d3dd5b647bc75a111ef62733bbaab2ce 175 SUPERFAMILY SSF158694 6 170 7.98E-41 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 R615_15460 d3dd5b647bc75a111ef62733bbaab2ce 175 TIGRFAM TIGR03180 UraD_2: OHCU decarboxylase 10 169 8.3E-56 T 12-10-2018 IPR017595 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2 R615_15460 d3dd5b647bc75a111ef62733bbaab2ce 175 Pfam PF09349 OHCU decarboxylase 11 167 2.0E-38 T 12-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 R615_15460 d3dd5b647bc75a111ef62733bbaab2ce 175 Gene3D G3DSA:1.10.3330.10 4 172 4.7E-54 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 R615_02335 3884286de4dc2ecf82bf0d90116fb03f 458 SUPERFAMILY SSF103473 10 383 2.09E-61 T 12-10-2018 IPR036259 MFS transporter superfamily R615_02335 3884286de4dc2ecf82bf0d90116fb03f 458 Pfam PF07690 Major Facilitator Superfamily 20 352 1.9E-41 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_02335 3884286de4dc2ecf82bf0d90116fb03f 458 ProSitePatterns PS00216 Sugar transport proteins signature 1. 68 84 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 R615_02335 3884286de4dc2ecf82bf0d90116fb03f 458 Gene3D G3DSA:1.20.1250.20 5 385 1.5E-81 T 12-10-2018 R615_05290 c222e556f6c3fd72e1e12b0aee6e80c7 126 Pfam PF10975 Protein of unknown function (DUF2802) 59 123 6.1E-16 T 12-10-2018 IPR021244 Protein of unknown function DUF2802 R615_14370 3bf0784d1c35fae9021917f6d99fbf97 116 Gene3D G3DSA:3.40.1440.10 19 114 2.2E-23 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 R615_14370 3bf0784d1c35fae9021917f6d99fbf97 116 SUPERFAMILY SSF82771 24 96 2.22E-7 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 R615_14370 3bf0784d1c35fae9021917f6d99fbf97 116 Pfam PF01541 GIY-YIG catalytic domain 24 96 5.7E-9 T 12-10-2018 IPR000305 GIY-YIG endonuclease R615_12615 a5463bd562c19c9effaed8228ece3253 397 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 1 351 2.8E-99 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB R615_12615 a5463bd562c19c9effaed8228ece3253 397 Pfam PF13360 PQQ-like domain 93 299 1.9E-40 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 Pfam PF13360 PQQ-like domain 36 89 3.9E-5 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 SMART SM00564 56 87 6.0E-5 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 SMART SM00564 181 212 2.3 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 SMART SM00564 231 262 13.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 SMART SM00564 269 300 120.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 SMART SM00564 135 167 31.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 SMART SM00564 96 127 0.13 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat R615_12615 a5463bd562c19c9effaed8228ece3253 397 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 1 395 30.146 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB R615_12615 a5463bd562c19c9effaed8228ece3253 397 Gene3D G3DSA:2.130.10.10 12 397 1.4E-81 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_12615 a5463bd562c19c9effaed8228ece3253 397 SUPERFAMILY SSF50998 17 360 2.47E-65 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily R615_16420 0e08ec600c1cb2b7f0d9d6dd70b676ac 389 Pfam PF16261 Domain of unknown function (DUF4915) 17 93 1.8E-14 T 12-10-2018 IPR017481 Conserved hypothetical protein CHP03032 R615_16420 0e08ec600c1cb2b7f0d9d6dd70b676ac 389 Pfam PF16261 Domain of unknown function (DUF4915) 133 371 2.9E-90 T 12-10-2018 IPR017481 Conserved hypothetical protein CHP03032 R615_16420 0e08ec600c1cb2b7f0d9d6dd70b676ac 389 SUPERFAMILY SSF63825 148 365 7.85E-12 T 12-10-2018 R615_16420 0e08ec600c1cb2b7f0d9d6dd70b676ac 389 TIGRFAM TIGR03032 TIGR03032: TIGR03032 family protein 132 377 1.1E-96 T 12-10-2018 IPR017481 Conserved hypothetical protein CHP03032 R615_05905 8db6e00d4c97159159c04ee72dd68e22 221 Gene3D G3DSA:3.40.50.1820 2 218 1.3E-56 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_05905 8db6e00d4c97159159c04ee72dd68e22 221 SUPERFAMILY SSF53474 7 220 2.34E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_05905 8db6e00d4c97159159c04ee72dd68e22 221 Pfam PF02230 Phospholipase/Carboxylesterase 12 218 3.3E-47 T 12-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 TIGRFAM TIGR00595 priA: primosomal protein N' 219 732 1.8E-180 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 Gene3D G3DSA:1.10.8.630 4 116 2.9E-32 T 12-10-2018 R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 SMART SM00487 193 390 7.5E-20 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 Hamap MF_00983 Probable primosomal protein N' [priA]. 8 734 23.987 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 Pfam PF00271 Helicase conserved C-terminal domain 515 586 2.0E-5 T 12-10-2018 IPR001650 Helicase, C-terminal R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 Gene3D G3DSA:3.40.50.300 190 377 2.3E-76 T 12-10-2018 R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 SUPERFAMILY SSF52540 191 375 6.8E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 SUPERFAMILY SSF52540 392 611 6.56E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 Pfam PF00270 DEAD/DEAH box helicase 205 362 4.1E-15 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_15105 b2a0e3bdf0664972367a4f1086f86e6e 735 SMART SM00490 490 587 8.7E-10 T 12-10-2018 IPR001650 Helicase, C-terminal R615_07015 beb4f498a0f62e129173878de4d8fe54 354 Pfam PF01594 AI-2E family transporter 19 345 6.3E-66 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like R615_09885 66248e6c467cd53db467e45ad419dc1c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09885 66248e6c467cd53db467e45ad419dc1c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09885 66248e6c467cd53db467e45ad419dc1c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09885 66248e6c467cd53db467e45ad419dc1c 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.0E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_09885 66248e6c467cd53db467e45ad419dc1c 290 SUPERFAMILY SSF46785 1 113 5.7E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_09885 66248e6c467cd53db467e45ad419dc1c 290 Gene3D G3DSA:1.10.10.10 1 87 2.4E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_09885 66248e6c467cd53db467e45ad419dc1c 290 Pfam PF03466 LysR substrate binding domain 89 289 2.0E-45 T 12-10-2018 IPR005119 LysR, substrate-binding R615_09885 66248e6c467cd53db467e45ad419dc1c 290 SUPERFAMILY SSF53850 90 290 6.64E-45 T 12-10-2018 R615_09885 66248e6c467cd53db467e45ad419dc1c 290 Gene3D G3DSA:3.40.190.290 93 290 2.4E-44 T 12-10-2018 R615_06640 4ac1eef6f30670b02c5e4cbb1372efaa 194 SUPERFAMILY SSF51161 25 183 1.66E-34 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_06640 4ac1eef6f30670b02c5e4cbb1372efaa 194 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 129 161 2.0E-10 T 12-10-2018 IPR001451 Hexapeptide repeat R615_06640 4ac1eef6f30670b02c5e4cbb1372efaa 194 Gene3D G3DSA:2.160.10.10 79 191 2.6E-28 T 12-10-2018 R615_06640 4ac1eef6f30670b02c5e4cbb1372efaa 194 PIRSF PIRSF000441 1 193 1.3E-42 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 R615_06640 4ac1eef6f30670b02c5e4cbb1372efaa 194 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 137 165 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 R615_05995 a9b594cd376dd73e040ba6e739a27b0b 159 Pfam PF02308 MgtC family 18 139 1.2E-28 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 R615_05995 a9b594cd376dd73e040ba6e739a27b0b 159 PRINTS PR01837 MgtC/SapB protein signature 93 117 1.0E-33 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 R615_05995 a9b594cd376dd73e040ba6e739a27b0b 159 PRINTS PR01837 MgtC/SapB protein signature 39 57 1.0E-33 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 R615_05995 a9b594cd376dd73e040ba6e739a27b0b 159 PRINTS PR01837 MgtC/SapB protein signature 66 88 1.0E-33 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 R615_05995 a9b594cd376dd73e040ba6e739a27b0b 159 PRINTS PR01837 MgtC/SapB protein signature 20 39 1.0E-33 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 R615_12040 6aaa7af9348177fe842b0be828da9bb0 173 SUPERFAMILY SSF52833 42 164 9.09E-35 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_12040 6aaa7af9348177fe842b0be828da9bb0 173 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 164 6.1E-55 T 12-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 R615_12040 6aaa7af9348177fe842b0be828da9bb0 173 Gene3D G3DSA:3.40.30.10 23 169 1.9E-39 T 12-10-2018 R615_12040 6aaa7af9348177fe842b0be828da9bb0 173 Pfam PF08534 Redoxin 40 159 4.3E-20 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 R615_12040 6aaa7af9348177fe842b0be828da9bb0 173 ProSitePatterns PS00194 Thioredoxin family active site. 66 84 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 R615_12430 015175945cd26cbbd175b8a45466c608 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 165 8.8E-45 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 R615_12430 015175945cd26cbbd175b8a45466c608 294 SUPERFAMILY SSF51735 5 167 7.89E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_12430 015175945cd26cbbd175b8a45466c608 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 288 1.6E-25 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 R615_12430 015175945cd26cbbd175b8a45466c608 294 Gene3D G3DSA:1.10.1040.10 166 292 1.6E-29 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 R615_12430 015175945cd26cbbd175b8a45466c608 294 SUPERFAMILY SSF48179 166 289 7.71E-28 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_12430 015175945cd26cbbd175b8a45466c608 294 PIRSF PIRSF000103 1 293 6.8E-67 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 R615_12430 015175945cd26cbbd175b8a45466c608 294 Gene3D G3DSA:3.40.50.720 1 165 8.7E-49 T 12-10-2018 R615_05630 57e0867678d19d0b5b6fa07b524c770d 257 SUPERFAMILY SSF102215 3 237 8.63E-64 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 R615_05630 57e0867678d19d0b5b6fa07b524c770d 257 Pfam PF02633 Creatinine amidohydrolase 6 234 3.5E-60 T 12-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 R615_05630 57e0867678d19d0b5b6fa07b524c770d 257 Gene3D G3DSA:3.40.50.10310 1 241 6.6E-64 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 R615_12305 82aab89ddb88e2e42b312a95bf8b8fb3 286 SUPERFAMILY SSF56091 32 204 2.82E-32 T 12-10-2018 R615_12305 82aab89ddb88e2e42b312a95bf8b8fb3 286 SUPERFAMILY SSF50249 178 283 1.31E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12305 82aab89ddb88e2e42b312a95bf8b8fb3 286 Gene3D G3DSA:3.30.470.30 57 157 3.6E-53 T 12-10-2018 R615_12305 82aab89ddb88e2e42b312a95bf8b8fb3 286 Pfam PF14743 DNA ligase OB-like domain 218 283 3.4E-23 T 12-10-2018 IPR029319 DNA ligase, OB-like domain R615_12305 82aab89ddb88e2e42b312a95bf8b8fb3 286 Gene3D G3DSA:3.30.1490.70 37 196 3.6E-53 T 12-10-2018 R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 SUPERFAMILY SSF51735 6 253 5.82E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 9.7E-88 T 12-10-2018 R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 3.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 3.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.7E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 PIRSF PIRSF000094 1 261 1.7E-110 T 12-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 R615_08380 e87c2994d54efcbb63b04bffe1c6db1a 269 Gene3D G3DSA:3.40.50.720 1 268 7.5E-63 T 12-10-2018 R615_13480 bb0ae01253503f1cc8eca667f406105d 196 SUPERFAMILY SSF56925 36 196 1.1E-22 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_13480 bb0ae01253503f1cc8eca667f406105d 196 Pfam PF13505 Outer membrane protein beta-barrel domain 10 196 2.5E-20 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel R615_13480 bb0ae01253503f1cc8eca667f406105d 196 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 72 171 9.9E-5 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 R615_13480 bb0ae01253503f1cc8eca667f406105d 196 Gene3D G3DSA:2.40.160.20 4 196 1.8E-26 T 12-10-2018 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 36 192 1.7E-50 T 12-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 Gene3D G3DSA:3.30.2350.10 4 253 3.7E-84 T 12-10-2018 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 193 254 8.3E-19 T 12-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 14 316 17.822 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 15 231 3.1E-71 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 SUPERFAMILY SSF55120 14 234 1.09E-71 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_04060 666bc8bc44d614dbddc4bd62896ed63d 324 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 259 316 1.8E-9 T 12-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_06785 ddb1488fb916c7830fc19f0afca4178e 79 Pfam PF09905 DNA-binding protein VF530 6 68 2.7E-35 T 12-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 R615_06785 ddb1488fb916c7830fc19f0afca4178e 79 Gene3D G3DSA:1.10.720.30 14 73 1.1E-30 T 12-10-2018 IPR036361 SAP domain superfamily R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 Pfam PF01979 Amidohydrolase family 131 461 2.2E-81 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 SUPERFAMILY SSF51338 429 484 1.73E-6 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 Pfam PF00449 Urease alpha-subunit, N-terminal domain 9 125 1.2E-55 T 12-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 Hamap MF_01953 Urease subunit alpha [ureC]. 8 574 56.562 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 SUPERFAMILY SSF51338 9 183 3.12E-62 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 340 356 1.4E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 301 318 1.4E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 434 447 1.4E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 408 423 1.4E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 ProSitePatterns PS01120 Urease nickel ligands signature. 133 146 - T 12-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 10 574 3.4E-296 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 ProSitePatterns PS00145 Urease active site. 323 339 - T 12-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 Gene3D G3DSA:2.30.40.10 8 487 3.3E-298 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 Gene3D G3DSA:3.20.20.140 135 556 3.3E-298 T 12-10-2018 R615_12550 4b432c6379b890cf58101ffb94aed7e5 574 SUPERFAMILY SSF51556 136 574 1.49E-197 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_16750 2cdab52530c9c7da55ca366b95d6e73a 919 Pfam PF03098 Animal haem peroxidase 61 608 1.3E-121 T 12-10-2018 IPR019791 Haem peroxidase, animal type R615_16750 2cdab52530c9c7da55ca366b95d6e73a 919 SUPERFAMILY SSF48113 58 633 9.18E-120 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 R615_16750 2cdab52530c9c7da55ca366b95d6e73a 919 Gene3D G3DSA:1.10.640.10 5 344 8.4E-101 T 12-10-2018 IPR037120 Haem peroxidase domain superfamily, animal type R615_16750 2cdab52530c9c7da55ca366b95d6e73a 919 Gene3D G3DSA:1.10.640.10 345 631 3.4E-85 T 12-10-2018 IPR037120 Haem peroxidase domain superfamily, animal type R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 Pfam PF11612 Type II secretion system (T2SS), protein J 71 242 1.5E-27 T 12-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 19 39 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 SUPERFAMILY SSF54523 21 71 4.08E-5 T 12-10-2018 R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 Pfam PF07963 Prokaryotic N-terminal methylation motif 16 40 3.0E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 19 131 6.4E-24 T 12-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 SUPERFAMILY SSF54523 55 246 2.72E-26 T 12-10-2018 R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 Gene3D G3DSA:3.10.610.10 51 133 2.1E-19 T 12-10-2018 R615_08830 3dcdb27a0c075751d354a97fccaae3b5 251 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 18 40 3.4E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_14195 17bf9872dee918a7c469230114110d28 601 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 160 5.1E-12 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_14195 17bf9872dee918a7c469230114110d28 601 Gene3D G3DSA:2.40.110.10 163 289 6.2E-27 T 12-10-2018 R615_14195 17bf9872dee918a7c469230114110d28 601 Gene3D G3DSA:1.20.140.10 290 465 3.7E-42 T 12-10-2018 R615_14195 17bf9872dee918a7c469230114110d28 601 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 165 273 5.3E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_14195 17bf9872dee918a7c469230114110d28 601 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 469 594 5.3E-37 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain R615_14195 17bf9872dee918a7c469230114110d28 601 Gene3D G3DSA:1.10.540.10 30 162 1.5E-16 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_14195 17bf9872dee918a7c469230114110d28 601 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 453 1.3E-21 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_14195 17bf9872dee918a7c469230114110d28 601 SUPERFAMILY SSF47203 289 477 8.38E-47 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_14195 17bf9872dee918a7c469230114110d28 601 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 1.4E-9 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria R615_14195 17bf9872dee918a7c469230114110d28 601 SUPERFAMILY SSF56645 37 281 1.7E-56 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_06605 30fd383f25949f011880c1a86d5c837f 76 SUPERFAMILY SSF47336 3 74 1.57E-11 T 12-10-2018 IPR036736 ACP-like superfamily R615_06605 30fd383f25949f011880c1a86d5c837f 76 Pfam PF00550 Phosphopantetheine attachment site 9 69 1.8E-5 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain R615_06605 30fd383f25949f011880c1a86d5c837f 76 Gene3D G3DSA:1.10.1200.10 1 76 2.0E-12 T 12-10-2018 IPR036736 ACP-like superfamily R615_09715 c30104e22592f40b9c14477f7e9ad9f6 140 Pfam PF09335 SNARE associated Golgi protein 34 136 5.7E-16 T 12-10-2018 IPR032816 SNARE associated Golgi protein R615_09715 c30104e22592f40b9c14477f7e9ad9f6 140 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 17 136 0.002 T 12-10-2018 IPR020143 Uncharacterised protein family, RP436 R615_06850 ce70f2991f6f1d3ab52863a3e6c15a0d 191 SUPERFAMILY SSF53271 7 164 1.7E-24 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_06850 ce70f2991f6f1d3ab52863a3e6c15a0d 191 Pfam PF00156 Phosphoribosyl transferase domain 4 153 5.7E-11 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_06850 ce70f2991f6f1d3ab52863a3e6c15a0d 191 Gene3D G3DSA:3.40.50.2020 1 184 6.4E-34 T 12-10-2018 R615_14675 6310fdb4e71affbd5e8f0c73245919b2 161 Hamap MF_01114 Regulatory protein RecX [recX]. 3 158 15.473 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 R615_14675 6310fdb4e71affbd5e8f0c73245919b2 161 Pfam PF02631 RecX family 41 153 7.0E-31 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 R615_14675 6310fdb4e71affbd5e8f0c73245919b2 161 Gene3D G3DSA:1.10.10.10 106 155 5.2E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14675 6310fdb4e71affbd5e8f0c73245919b2 161 Gene3D G3DSA:1.10.10.10 61 104 1.4E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14675 6310fdb4e71affbd5e8f0c73245919b2 161 Gene3D G3DSA:1.10.10.10 14 59 5.3E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_09660 33cb0451b49f8eda5bb5c8a05e827873 207 PIRSF PIRSF020736 1 206 7.0E-86 T 12-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 R615_09660 33cb0451b49f8eda5bb5c8a05e827873 207 Gene3D G3DSA:1.20.1260.10 3 207 4.3E-82 T 12-10-2018 IPR012347 Ferritin-like R615_09660 33cb0451b49f8eda5bb5c8a05e827873 207 SUPERFAMILY SSF47240 7 204 8.55E-76 T 12-10-2018 IPR009078 Ferritin-like superfamily R615_09660 33cb0451b49f8eda5bb5c8a05e827873 207 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 6 57 6.6E-16 T 12-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 R615_09660 33cb0451b49f8eda5bb5c8a05e827873 207 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 59 201 1.2E-57 T 12-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 R615_07895 d1dd2b44c512d5bfd2af809893d8c870 293 Gene3D G3DSA:3.40.50.1820 24 290 1.8E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_07895 d1dd2b44c512d5bfd2af809893d8c870 293 SUPERFAMILY SSF53474 40 276 9.06E-29 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16545 61e318652671b7405b767acd7e790cef 287 Gene3D G3DSA:3.40.1090.10 91 218 2.1E-9 T 12-10-2018 R615_16545 61e318652671b7405b767acd7e790cef 287 SUPERFAMILY SSF52151 1 234 1.02E-36 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase R615_16545 61e318652671b7405b767acd7e790cef 287 Pfam PF01734 Patatin-like phospholipase 8 172 1.1E-17 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 R615_03630 541d4e166dba9cbba51dab3eb4166cc1 149 Gene3D G3DSA:3.10.450.50 12 136 7.3E-19 T 12-10-2018 R615_03630 541d4e166dba9cbba51dab3eb4166cc1 149 Pfam PF12680 SnoaL-like domain 17 118 9.2E-13 T 12-10-2018 IPR037401 SnoaL-like domain R615_03630 541d4e166dba9cbba51dab3eb4166cc1 149 SUPERFAMILY SSF54427 13 135 1.33E-19 T 12-10-2018 IPR032710 NTF2-like domain superfamily R615_14430 763a407ea3fc64dc85698f3cb2336f3d 106 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 26.152 T 12-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 R615_14430 763a407ea3fc64dc85698f3cb2336f3d 106 SMART SM00450 7 102 6.0E-17 T 12-10-2018 IPR001763 Rhodanese-like domain R615_14430 763a407ea3fc64dc85698f3cb2336f3d 106 Pfam PF00581 Rhodanese-like domain 8 97 1.7E-13 T 12-10-2018 IPR001763 Rhodanese-like domain R615_14430 763a407ea3fc64dc85698f3cb2336f3d 106 Gene3D G3DSA:3.40.250.10 1 101 3.5E-23 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_14430 763a407ea3fc64dc85698f3cb2336f3d 106 SUPERFAMILY SSF52821 2 105 1.44E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_00205 967ab398ef01be9eaddad63a93f79e09 270 Gene3D G3DSA:3.40.50.720 1 246 4.3E-68 T 12-10-2018 R615_00205 967ab398ef01be9eaddad63a93f79e09 270 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 5.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 5.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 5.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 5.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 Pfam PF00106 short chain dehydrogenase 2 189 1.5E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 SUPERFAMILY SSF51735 2 258 2.7E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00205 967ab398ef01be9eaddad63a93f79e09 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 1.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_16770 0a492e6c82c547dbf005e89b30d0151b 437 SUPERFAMILY SSF55154 1 208 4.09E-38 T 12-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 R615_16770 0a492e6c82c547dbf005e89b30d0151b 437 Pfam PF01928 CYTH domain 3 197 2.6E-25 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 R615_16770 0a492e6c82c547dbf005e89b30d0151b 437 Gene3D G3DSA:2.40.320.10 1 199 2.5E-31 T 12-10-2018 R615_16770 0a492e6c82c547dbf005e89b30d0151b 437 SMART SM01118 2 203 5.9E-28 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 R615_15760 13e39185e369a0badf661d1dda252da2 362 SUPERFAMILY SSF48452 93 227 1.04E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_15760 13e39185e369a0badf661d1dda252da2 362 Gene3D G3DSA:1.25.40.10 72 355 9.9E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 Gene3D G3DSA:1.20.58.220 122 237 4.4E-34 T 12-10-2018 IPR038078 PhoU-like domain superfamily R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 PIRSF PIRSF003107 6 227 3.6E-66 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 Pfam PF01895 PhoU domain 26 109 5.4E-22 T 12-10-2018 IPR026022 PhoU domain R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 Pfam PF01895 PhoU domain 130 212 3.1E-16 T 12-10-2018 IPR026022 PhoU domain R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 Gene3D G3DSA:1.20.58.220 1 121 1.9E-40 T 12-10-2018 IPR038078 PhoU-like domain superfamily R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 12 221 5.5E-66 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 R615_00740 6f92a9f7e7a5cd35ab29c81cbddcd2c0 240 SUPERFAMILY SSF109755 12 230 2.83E-67 T 12-10-2018 R615_07005 60d7d7247ff7317b3723f86f53d3308b 478 Gene3D G3DSA:1.25.40.10 241 475 4.0E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_07005 60d7d7247ff7317b3723f86f53d3308b 478 SUPERFAMILY SSF48452 301 448 2.68E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_07005 60d7d7247ff7317b3723f86f53d3308b 478 Pfam PF01435 Peptidase family M48 70 251 1.9E-30 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 R615_07005 60d7d7247ff7317b3723f86f53d3308b 478 Gene3D G3DSA:3.30.2010.10 68 142 5.9E-6 T 12-10-2018 R615_07005 60d7d7247ff7317b3723f86f53d3308b 478 Pfam PF14559 Tetratricopeptide repeat 349 407 6.3E-6 T 12-10-2018 R615_06250 16089082cc6fdade5cabd5e034488223 226 Pfam PF02224 Cytidylate kinase 8 221 2.7E-78 T 12-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 R615_06250 16089082cc6fdade5cabd5e034488223 226 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 8.3E-84 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 R615_06250 16089082cc6fdade5cabd5e034488223 226 SUPERFAMILY SSF52540 6 222 1.98E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06250 16089082cc6fdade5cabd5e034488223 226 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 33.377 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 R615_06250 16089082cc6fdade5cabd5e034488223 226 Gene3D G3DSA:3.40.50.300 2 225 1.2E-81 T 12-10-2018 R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 Gene3D G3DSA:3.40.50.1820 24 288 4.5E-37 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 SUPERFAMILY SSF53474 19 304 1.5E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 Gene3D G3DSA:1.10.10.800 157 237 4.5E-37 T 12-10-2018 R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 PRINTS PR00111 Alpha/beta hydrolase fold signature 139 152 1.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 PRINTS PR00111 Alpha/beta hydrolase fold signature 125 138 1.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 PRINTS PR00111 Alpha/beta hydrolase fold signature 74 89 1.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 PRINTS PR00111 Alpha/beta hydrolase fold signature 249 263 1.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_10645 4ee56720410d51b3a486e286fb8a59a1 312 Pfam PF12146 Serine aminopeptidase, S33 48 263 1.7E-15 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 R615_15440 9288bc1a3b303e96393c43decda9e3f4 391 Pfam PF06181 Urate oxidase N-terminal 3 298 9.4E-128 T 12-10-2018 IPR010389 Urate oxidase N-terminal R615_15440 9288bc1a3b303e96393c43decda9e3f4 391 SUPERFAMILY SSF46626 293 389 1.7E-5 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_03800 0642fedcd350740076b772ca9c138513 598 Gene3D G3DSA:2.40.110.10 160 285 3.4E-27 T 12-10-2018 R615_03800 0642fedcd350740076b772ca9c138513 598 Gene3D G3DSA:1.10.540.10 17 159 1.9E-19 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_03800 0642fedcd350740076b772ca9c138513 598 SUPERFAMILY SSF47203 286 471 1.21E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_03800 0642fedcd350740076b772ca9c138513 598 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 589 3.7E-29 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain R615_03800 0642fedcd350740076b772ca9c138513 598 SUPERFAMILY SSF56645 39 278 7.07E-59 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_03800 0642fedcd350740076b772ca9c138513 598 Gene3D G3DSA:1.20.140.10 286 456 8.1E-44 T 12-10-2018 R615_03800 0642fedcd350740076b772ca9c138513 598 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 47 157 2.2E-15 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_03800 0642fedcd350740076b772ca9c138513 598 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 29 5.6E-8 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria R615_03800 0642fedcd350740076b772ca9c138513 598 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 281 453 5.8E-20 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_03800 0642fedcd350740076b772ca9c138513 598 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 270 2.9E-17 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_16680 fd60809e8e10631b1aa839ef395e9146 736 Pfam PF13361 UvrD-like helicase C-terminal domain 277 622 1.5E-70 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 R615_16680 fd60809e8e10631b1aa839ef395e9146 736 Gene3D G3DSA:3.40.50.300 10 274 1.0E-95 T 12-10-2018 R615_16680 fd60809e8e10631b1aa839ef395e9146 736 Gene3D G3DSA:1.10.486.10 382 544 1.4E-124 T 12-10-2018 R615_16680 fd60809e8e10631b1aa839ef395e9146 736 Gene3D G3DSA:3.40.50.300 281 642 1.4E-124 T 12-10-2018 R615_16680 fd60809e8e10631b1aa839ef395e9146 736 Gene3D G3DSA:1.10.10.160 114 187 1.0E-95 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily R615_16680 fd60809e8e10631b1aa839ef395e9146 736 SUPERFAMILY SSF52540 7 648 4.92E-176 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16680 fd60809e8e10631b1aa839ef395e9146 736 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 272 1.6E-71 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 R615_07215 7c690d09a275ea188780c2c77992a1a7 152 Gene3D G3DSA:3.40.50.300 37 151 1.4E-15 T 12-10-2018 R615_07215 7c690d09a275ea188780c2c77992a1a7 152 Pfam PF03846 Cell division inhibitor SulA 31 99 6.1E-11 T 12-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 R615_07215 7c690d09a275ea188780c2c77992a1a7 152 SUPERFAMILY SSF52540 38 150 1.43E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07215 7c690d09a275ea188780c2c77992a1a7 152 PIRSF PIRSF003093 8 150 4.0E-14 T 12-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 R615_15090 ffa7b486d6508cc1a4bcf897295e7033 215 Gene3D G3DSA:3.60.15.10 4 212 1.7E-78 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_15090 ffa7b486d6508cc1a4bcf897295e7033 215 SUPERFAMILY SSF56281 5 210 1.06E-54 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_15090 ffa7b486d6508cc1a4bcf897295e7033 215 Pfam PF00753 Metallo-beta-lactamase superfamily 14 192 1.6E-26 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_15090 ffa7b486d6508cc1a4bcf897295e7033 215 SMART SM00849 14 194 4.9E-38 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 8 181 2.0E-35 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 SUPERFAMILY SSF52413 305 416 4.84E-26 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 PIRSF PIRSF000124 7 421 2.5E-54 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 416 7.1E-19 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 Gene3D G3DSA:3.40.50.720 201 423 1.3E-53 T 12-10-2018 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 SMART SM00984 318 418 6.8E-32 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 203 291 8.9E-25 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 Gene3D G3DSA:3.40.50.720 3 200 1.3E-58 T 12-10-2018 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 PIRSF PIRSF500136 2 424 2.5E-148 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 8 413 1.5E-118 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 SUPERFAMILY SSF51735 8 192 2.23E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06285 e8e29fa8ced62f1f93701455a149acbd 425 SUPERFAMILY SSF48179 202 293 7.82E-24 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_02170 8361623e3d2c56e1cbca3d6b926a1718 77 Gene3D G3DSA:3.30.300.90 1 77 6.6E-18 T 12-10-2018 R615_02170 8361623e3d2c56e1cbca3d6b926a1718 77 Pfam PF01722 BolA-like protein 32 73 3.2E-9 T 12-10-2018 IPR002634 BolA protein R615_02170 8361623e3d2c56e1cbca3d6b926a1718 77 SUPERFAMILY SSF82657 3 75 3.4E-15 T 12-10-2018 IPR036065 BolA-like superfamily R615_02170 8361623e3d2c56e1cbca3d6b926a1718 77 PIRSF PIRSF003113 4 77 5.2E-13 T 12-10-2018 IPR002634 BolA protein R615_09460 8a72961a99ded39af8efdacc26a8a3c1 257 Pfam PF01925 Sulfite exporter TauE/SafE 7 253 1.5E-47 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 R615_07825 95908382ee53a53050f143de3fab1953 162 Pfam PF13511 Domain of unknown function (DUF4124) 8 47 2.2E-5 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 R615_00735 04227b0d68e5e84742effa45997a66d7 267 SUPERFAMILY SSF52540 20 254 1.44E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_00735 04227b0d68e5e84742effa45997a66d7 267 SMART SM00382 44 238 6.4E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_00735 04227b0d68e5e84742effa45997a66d7 267 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 20 267 1.1E-120 T 12-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 R615_00735 04227b0d68e5e84742effa45997a66d7 267 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_00735 04227b0d68e5e84742effa45997a66d7 267 Pfam PF00005 ABC transporter 36 191 6.8E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_00735 04227b0d68e5e84742effa45997a66d7 267 Gene3D G3DSA:3.40.50.300 18 265 7.6E-65 T 12-10-2018 R615_16385 e4cacea5adfb3f29319be3a8d3556419 414 SUPERFAMILY SSF53187 100 382 5.95E-60 T 12-10-2018 R615_16385 e4cacea5adfb3f29319be3a8d3556419 414 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 115 381 6.9E-49 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 R615_16385 e4cacea5adfb3f29319be3a8d3556419 414 Gene3D G3DSA:3.40.630.10 77 384 1.6E-86 T 12-10-2018 R615_07705 02d26a2a4f468dd8bfca98ed4431a67a 70 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 2 49 8.7E-16 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type R615_07705 02d26a2a4f468dd8bfca98ed4431a67a 70 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 6.1E-22 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 Gene3D G3DSA:3.30.2350.10 100 323 5.3E-74 T 12-10-2018 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 SMART SM00363 28 87 6.4E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 Pfam PF01479 S4 domain 28 74 2.3E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 SUPERFAMILY SSF55174 27 78 1.16E-8 T 12-10-2018 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 147 161 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 SUPERFAMILY SSF55120 102 322 1.34E-60 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 Pfam PF00849 RNA pseudouridylate synthase 109 258 1.4E-31 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 Gene3D G3DSA:3.10.290.10 16 80 2.1E-15 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_09340 3e91f1f578c000d33df41077bd6e5f30 330 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 24 320 1.8E-79 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_17245 6a3b99aafbdd58a42d25c96c4fc24b0b 842 SUPERFAMILY SSF56059 56 463 2.12E-25 T 12-10-2018 R615_17245 6a3b99aafbdd58a42d25c96c4fc24b0b 842 Pfam PF14403 Circularly permuted ATP-grasp type 2 88 462 1.7E-150 T 12-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 R615_17245 6a3b99aafbdd58a42d25c96c4fc24b0b 842 Gene3D G3DSA:3.40.50.11290 226 322 8.4E-40 T 12-10-2018 R615_17245 6a3b99aafbdd58a42d25c96c4fc24b0b 842 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 512 825 4.3E-63 T 12-10-2018 IPR007296 Domain of unknown function DUF403 R615_17245 6a3b99aafbdd58a42d25c96c4fc24b0b 842 Gene3D G3DSA:3.30.1490.270 359 419 1.8E-12 T 12-10-2018 R615_01380 51401584d5f63d7c513c17ca1d33cfc0 309 Pfam PF01063 Amino-transferase class IV 38 268 5.8E-54 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 R615_01380 51401584d5f63d7c513c17ca1d33cfc0 309 Gene3D G3DSA:3.20.10.10 134 297 1.5E-56 T 12-10-2018 R615_01380 51401584d5f63d7c513c17ca1d33cfc0 309 ProSitePatterns PS00770 Aminotransferases class-IV signature. 196 224 - T 12-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 R615_01380 51401584d5f63d7c513c17ca1d33cfc0 309 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 13 308 3.6E-136 T 12-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 R615_01380 51401584d5f63d7c513c17ca1d33cfc0 309 Gene3D G3DSA:3.30.470.10 3 133 3.5E-44 T 12-10-2018 R615_01380 51401584d5f63d7c513c17ca1d33cfc0 309 SUPERFAMILY SSF56752 5 305 1.83E-104 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 R615_13605 ab286b0c51b17d0f521d645e283fbe14 180 Gene3D G3DSA:1.20.58.320 1 79 5.2E-29 T 12-10-2018 R615_13605 ab286b0c51b17d0f521d645e283fbe14 180 Pfam PF06041 Bacterial protein of unknown function (DUF924) 7 177 3.4E-63 T 12-10-2018 IPR010323 Protein of unknown function DUF924 R615_13605 ab286b0c51b17d0f521d645e283fbe14 180 SUPERFAMILY SSF48452 2 176 3.79E-69 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13605 ab286b0c51b17d0f521d645e283fbe14 180 Gene3D G3DSA:1.25.40.10 80 180 1.8E-31 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_08215 f2d3333848a568eca6fd547c8a00def3 182 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 164 2.8E-42 T 12-10-2018 IPR018639 Domain of unknown function DUF2062 R615_02425 f8a14da1d52c1909397cbceb5e4a07e1 285 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 11 284 45.781 T 12-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 R615_02425 f8a14da1d52c1909397cbceb5e4a07e1 285 Pfam PF02666 Phosphatidylserine decarboxylase 64 281 1.2E-59 T 12-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 R615_02425 f8a14da1d52c1909397cbceb5e4a07e1 285 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 50 282 4.8E-74 T 12-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 R615_11860 28e65985130063382edb3fead0a9f098 185 ProSitePatterns PS00893 Nudix box signature. 83 104 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_11860 28e65985130063382edb3fead0a9f098 185 Gene3D G3DSA:3.90.79.10 8 181 1.9E-41 T 12-10-2018 R615_11860 28e65985130063382edb3fead0a9f098 185 Pfam PF00293 NUDIX domain 49 158 2.1E-15 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_11860 28e65985130063382edb3fead0a9f098 185 SUPERFAMILY SSF55811 10 182 2.57E-39 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_13035 3f7c9c49db0435afc6b38c57b1d03a14 248 SUPERFAMILY SSF55469 4 247 1.69E-66 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 R615_13035 3f7c9c49db0435afc6b38c57b1d03a14 248 PIRSF PIRSF005426 3 248 9.3E-80 T 12-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 R615_13035 3f7c9c49db0435afc6b38c57b1d03a14 248 Pfam PF00881 Nitroreductase family 14 166 2.8E-17 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 R615_13035 3f7c9c49db0435afc6b38c57b1d03a14 248 Gene3D G3DSA:3.40.109.10 4 248 3.0E-70 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 R615_08880 5407f70d12ab4391eccb9c5bc875a3bf 562 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 11 561 9.5E-154 T 12-10-2018 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 R615_08880 5407f70d12ab4391eccb9c5bc875a3bf 562 Gene3D G3DSA:3.40.50.2000 14 145 5.5E-10 T 12-10-2018 R615_08880 5407f70d12ab4391eccb9c5bc875a3bf 562 Gene3D G3DSA:3.40.50.2000 296 559 1.1E-41 T 12-10-2018 R615_08880 5407f70d12ab4391eccb9c5bc875a3bf 562 Pfam PF00343 Carbohydrate phosphorylase 248 487 2.7E-25 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 R615_08880 5407f70d12ab4391eccb9c5bc875a3bf 562 Pfam PF00343 Carbohydrate phosphorylase 28 84 1.5E-5 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 R615_08880 5407f70d12ab4391eccb9c5bc875a3bf 562 SUPERFAMILY SSF53756 8 561 1.06E-150 T 12-10-2018 R615_15215 d5f6a8066be748c8f77f5aa7cb255666 622 Gene3D G3DSA:2.60.40.10 205 289 8.6E-8 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_15215 d5f6a8066be748c8f77f5aa7cb255666 622 SUPERFAMILY SSF49373 212 283 8.89E-9 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments R615_04715 8b732d15f77efde2194cc802da82cf11 156 Gene3D G3DSA:1.20.58.300 2 129 8.2E-15 T 12-10-2018 R615_04715 8b732d15f77efde2194cc802da82cf11 156 Pfam PF05130 FlgN protein 5 145 7.0E-18 T 12-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 R615_04715 8b732d15f77efde2194cc802da82cf11 156 SUPERFAMILY SSF140566 8 129 4.32E-15 T 12-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 R615_12535 78042bcd61c2aa169823e73a30ed11e7 294 Pfam PF01774 UreD urease accessory protein 60 268 9.1E-40 T 12-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 R615_12535 78042bcd61c2aa169823e73a30ed11e7 294 Hamap MF_01384 Urease accessory protein UreD [ureD]. 18 278 27.747 T 12-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 R615_06330 529664320f35f3121c3b56e69d772886 372 Gene3D G3DSA:3.90.25.10 221 353 5.3E-134 T 12-10-2018 R615_06330 529664320f35f3121c3b56e69d772886 372 SUPERFAMILY SSF51735 1 357 2.03E-92 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_06330 529664320f35f3121c3b56e69d772886 372 Gene3D G3DSA:3.40.50.720 2 344 5.3E-134 T 12-10-2018 R615_06330 529664320f35f3121c3b56e69d772886 372 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 345 1.2E-93 T 12-10-2018 IPR016040 NAD(P)-binding domain R615_09935 0c7ec650531b61501b0f8c6392ce7848 146 SUPERFAMILY SSF52402 1 143 1.76E-34 T 12-10-2018 R615_09935 0c7ec650531b61501b0f8c6392ce7848 146 PRINTS PR01438 Universal stress protein signature 101 113 5.4E-12 T 12-10-2018 IPR006015 Universal stress protein A R615_09935 0c7ec650531b61501b0f8c6392ce7848 146 PRINTS PR01438 Universal stress protein signature 119 141 5.4E-12 T 12-10-2018 IPR006015 Universal stress protein A R615_09935 0c7ec650531b61501b0f8c6392ce7848 146 PIRSF PIRSF006276 1 144 5.4E-22 T 12-10-2018 IPR006015 Universal stress protein A R615_09935 0c7ec650531b61501b0f8c6392ce7848 146 Pfam PF00582 Universal stress protein family 2 141 9.4E-27 T 12-10-2018 IPR006016 UspA R615_09935 0c7ec650531b61501b0f8c6392ce7848 146 Gene3D G3DSA:3.40.50.620 1 142 3.4E-34 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_16145 212fc060270cc1a77781d12b74e1f75b 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.792 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.7E-39 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.7E-39 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.7E-39 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.7E-39 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 SUPERFAMILY SSF54686 1 134 2.88E-54 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 Gene3D G3DSA:3.90.1170.10 1 137 6.2E-55 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.8E-47 T 12-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 3.2E-59 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16145 212fc060270cc1a77781d12b74e1f75b 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_02085 7f2dfd913417d8aa682eebd73bfa2d8c 262 Pfam PF00795 Carbon-nitrogen hydrolase 4 254 2.3E-55 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 R615_02085 7f2dfd913417d8aa682eebd73bfa2d8c 262 Gene3D G3DSA:3.60.110.10 1 262 6.6E-91 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_02085 7f2dfd913417d8aa682eebd73bfa2d8c 262 SUPERFAMILY SSF56317 4 261 1.83E-80 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 Gene3D G3DSA:3.90.1150.10 9 405 1.3E-103 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 4 415 4.6E-136 T 12-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 TIGRFAM TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase 3 409 6.0E-189 T 12-10-2018 IPR012773 Ectoine biosynthetic protein GO:0019491|GO:0030170|GO:0047307 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 231 267 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 SUPERFAMILY SSF53383 9 410 6.05E-102 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 Gene3D G3DSA:3.40.640.10 54 314 1.3E-103 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 PIRSF PIRSF000521 122 412 2.4E-34 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 PIRSF PIRSF000521 3 128 2.1 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_16565 67e31bb2de91d0a0dd77f8f509c11f42 421 Pfam PF00202 Aminotransferase class-III 18 409 4.4E-77 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 R615_07460 bd52a4192fb8aabe7ee7243a536576f2 445 Gene3D G3DSA:3.40.50.720 33 211 1.9E-37 T 12-10-2018 R615_07460 bd52a4192fb8aabe7ee7243a536576f2 445 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 35 167 2.5E-14 T 12-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 R615_07460 bd52a4192fb8aabe7ee7243a536576f2 445 SUPERFAMILY SSF51735 35 189 3.71E-11 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_15240 db062221abae16aefbad4d6f70c18411 169 Gene3D G3DSA:3.40.50.300 1 169 1.4E-54 T 12-10-2018 R615_15240 db062221abae16aefbad4d6f70c18411 169 ProSitePatterns PS01128 Shikimate kinase signature. 57 82 - T 12-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 R615_15240 db062221abae16aefbad4d6f70c18411 169 PRINTS PR01100 Shikimate kinase family signature 74 83 2.6E-26 T 12-10-2018 R615_15240 db062221abae16aefbad4d6f70c18411 169 PRINTS PR01100 Shikimate kinase family signature 95 112 2.6E-26 T 12-10-2018 R615_15240 db062221abae16aefbad4d6f70c18411 169 PRINTS PR01100 Shikimate kinase family signature 28 41 2.6E-26 T 12-10-2018 R615_15240 db062221abae16aefbad4d6f70c18411 169 PRINTS PR01100 Shikimate kinase family signature 56 64 2.6E-26 T 12-10-2018 R615_15240 db062221abae16aefbad4d6f70c18411 169 PRINTS PR01100 Shikimate kinase family signature 4 19 2.6E-26 T 12-10-2018 R615_15240 db062221abae16aefbad4d6f70c18411 169 SUPERFAMILY SSF52540 2 166 2.36E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15240 db062221abae16aefbad4d6f70c18411 169 Pfam PF01202 Shikimate kinase 10 166 2.8E-54 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 R615_15240 db062221abae16aefbad4d6f70c18411 169 Hamap MF_00109 Shikimate kinase [aroK]. 1 167 28.647 T 12-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 R615_16845 3258840b5fb2ca55517bf6f9d95d3d93 591 Pfam PF01471 Putative peptidoglycan binding domain 295 323 3.9E-6 T 12-10-2018 IPR002477 Peptidoglycan binding-like R615_16845 3258840b5fb2ca55517bf6f9d95d3d93 591 SUPERFAMILY SSF141523 351 513 3.01E-15 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like R615_16845 3258840b5fb2ca55517bf6f9d95d3d93 591 Pfam PF03734 L,D-transpeptidase catalytic domain 354 524 1.5E-26 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 R615_16845 3258840b5fb2ca55517bf6f9d95d3d93 591 SUPERFAMILY SSF47090 287 329 1.22E-6 T 12-10-2018 IPR036365 PGBD-like superfamily R615_00805 474b5ebca2ff3fe9446b2fdcd44f5e6a 311 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 21 304 28.555 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 R615_00805 474b5ebca2ff3fe9446b2fdcd44f5e6a 311 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 26 303 1.3E-96 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 R615_00805 474b5ebca2ff3fe9446b2fdcd44f5e6a 311 Gene3D G3DSA:1.10.357.140 39 185 7.6E-41 T 12-10-2018 R615_00805 474b5ebca2ff3fe9446b2fdcd44f5e6a 311 Gene3D G3DSA:1.20.120.1780 186 306 1.6E-11 T 12-10-2018 R615_00805 474b5ebca2ff3fe9446b2fdcd44f5e6a 311 Pfam PF01040 UbiA prenyltransferase family 44 287 3.9E-62 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 R615_00145 a8bd95d13542f6d30b5d19fe2c8f6225 151 Pfam PF06853 Protein of unknown function (DUF1249) 23 140 1.8E-41 T 12-10-2018 IPR009659 Protein of unknown function DUF1249 R615_09755 4f912d82012d47a83c6ad6b8cb12c094 108 SUPERFAMILY SSF52833 37 106 8.25E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_09755 4f912d82012d47a83c6ad6b8cb12c094 108 Gene3D G3DSA:3.40.30.10 37 108 5.6E-19 T 12-10-2018 R615_09755 4f912d82012d47a83c6ad6b8cb12c094 108 Pfam PF00462 Glutaredoxin 38 96 9.2E-15 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 R615_11620 f8c867adec419cdf3ba88c3a33afb86f 223 SUPERFAMILY SSF52058 51 190 5.78E-11 T 12-10-2018 R615_11620 f8c867adec419cdf3ba88c3a33afb86f 223 Gene3D G3DSA:3.80.10.10 31 191 9.8E-13 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 34 156 9.3E-7 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 Pfam PF12833 Helix-turn-helix domain 253 330 8.9E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 SUPERFAMILY SSF46689 283 333 5.38E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 2.6E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 2.6E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 SMART SM00342 247 329 9.6E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_14670 35ad87a35891bfcf7cb305a5e1c10bf2 344 Gene3D G3DSA:1.10.10.60 228 342 2.1E-23 T 12-10-2018 R615_15445 cb0c291793bf5bf120460b5bd654a70e 443 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 30 429 4.2E-177 T 12-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 R615_15445 cb0c291793bf5bf120460b5bd654a70e 443 SUPERFAMILY SSF51556 74 376 1.24E-94 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_15445 cb0c291793bf5bf120460b5bd654a70e 443 Pfam PF01979 Amidohydrolase family 71 430 6.5E-64 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 R615_15445 cb0c291793bf5bf120460b5bd654a70e 443 Gene3D G3DSA:3.20.20.140 75 391 8.7E-181 T 12-10-2018 R615_15445 cb0c291793bf5bf120460b5bd654a70e 443 SUPERFAMILY SSF51338 30 90 3.14E-10 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_15445 cb0c291793bf5bf120460b5bd654a70e 443 Gene3D G3DSA:2.30.40.10 9 427 8.7E-181 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 R615_08050 de200207be22947835664243b3312515 278 Pfam PF14489 QueF-like protein 191 265 9.4E-22 T 12-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 R615_08050 de200207be22947835664243b3312515 278 SUPERFAMILY SSF55620 182 262 8.89E-6 T 12-10-2018 R615_08050 de200207be22947835664243b3312515 278 TIGRFAM TIGR03138 QueF: queuine synthase 7 278 3.0E-109 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 R615_08050 de200207be22947835664243b3312515 278 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 278 125.3 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 R615_08050 de200207be22947835664243b3312515 278 Gene3D G3DSA:3.30.1130.10 17 135 8.2E-39 T 12-10-2018 R615_08050 de200207be22947835664243b3312515 278 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 17 120 2.6E-42 T 12-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 R615_08050 de200207be22947835664243b3312515 278 PIRSF PIRSF004750 2 278 3.6E-106 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 R615_08050 de200207be22947835664243b3312515 278 Gene3D G3DSA:3.30.1130.10 141 278 6.0E-52 T 12-10-2018 R615_17030 eef979a25005b6298a839847cdc2d570 520 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 520 192.496 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 R615_17030 eef979a25005b6298a839847cdc2d570 520 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 13 515 6.7E-189 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 R615_17030 eef979a25005b6298a839847cdc2d570 520 Pfam PF04262 Glutamate-cysteine ligase 9 378 3.5E-165 T 12-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 R615_17030 eef979a25005b6298a839847cdc2d570 520 Gene3D G3DSA:3.30.590.20 19 520 3.3E-193 T 12-10-2018 R615_17030 eef979a25005b6298a839847cdc2d570 520 SUPERFAMILY SSF55931 6 514 4.45E-185 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 R615_00185 5869e62fef0537aba8fe403502ab1ead 463 SUPERFAMILY SSF54862 107 348 7.95E-29 T 12-10-2018 R615_00185 5869e62fef0537aba8fe403502ab1ead 463 Gene3D G3DSA:2.60.40.10 351 461 2.1E-9 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_00185 5869e62fef0537aba8fe403502ab1ead 463 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 43 434 3.6E-125 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 R615_00185 5869e62fef0537aba8fe403502ab1ead 463 Pfam PF13746 4Fe-4S dicluster domain 219 319 2.7E-37 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_00185 5869e62fef0537aba8fe403502ab1ead 463 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 267 278 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_00185 5869e62fef0537aba8fe403502ab1ead 463 Gene3D G3DSA:3.30.70.20 218 286 3.5E-5 T 12-10-2018 R615_00185 5869e62fef0537aba8fe403502ab1ead 463 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 351 461 2.0E-10 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain R615_00185 5869e62fef0537aba8fe403502ab1ead 463 Pfam PF12801 4Fe-4S binding domain 99 128 4.3E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_01550 55bb43874113616159ebbc83ea95b53e 407 Gene3D G3DSA:3.30.565.10 286 406 8.9E-10 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_01550 55bb43874113616159ebbc83ea95b53e 407 SUPERFAMILY SSF55874 277 403 8.51E-14 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_01550 55bb43874113616159ebbc83ea95b53e 407 Gene3D G3DSA:1.10.287.130 174 257 2.2E-6 T 12-10-2018 R615_02305 9625f09430c17a21ecd29251c17a015d 245 Gene3D G3DSA:3.40.1210.10 1 245 1.5E-79 T 12-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 R615_02305 9625f09430c17a21ecd29251c17a015d 245 Pfam PF01975 Survival protein SurE 4 180 7.0E-51 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 R615_02305 9625f09430c17a21ecd29251c17a015d 245 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 245 34.595 T 12-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 R615_02305 9625f09430c17a21ecd29251c17a015d 245 SUPERFAMILY SSF64167 1 242 6.41E-73 T 12-10-2018 R615_02305 9625f09430c17a21ecd29251c17a015d 245 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 7.4E-57 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 R615_10950 1441fba27f4b3dd1dc729511bdd33120 282 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 270 39.425 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 R615_10950 1441fba27f4b3dd1dc729511bdd33120 282 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 277 1.7E-73 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 R615_10950 1441fba27f4b3dd1dc729511bdd33120 282 Gene3D G3DSA:3.40.50.150 1 282 9.3E-100 T 12-10-2018 R615_10950 1441fba27f4b3dd1dc729511bdd33120 282 SUPERFAMILY SSF53335 9 273 1.13E-84 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_05920 0cedddd4b7204663e589fd80d20a3dae 119 SUPERFAMILY SSF89360 14 108 1.39E-23 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 R615_05920 0cedddd4b7204663e589fd80d20a3dae 119 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 119 2.3E-30 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 R615_05920 0cedddd4b7204663e589fd80d20a3dae 119 Gene3D G3DSA:2.60.300.12 13 119 1.3E-31 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 R615_05920 0cedddd4b7204663e589fd80d20a3dae 119 Pfam PF01521 Iron-sulphur cluster biosynthesis 14 115 7.1E-20 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 R615_14180 8b3552d63cd1beb37a3181f5a0494b18 119 Gene3D G3DSA:3.30.160.100 2 115 1.7E-12 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like R615_14180 8b3552d63cd1beb37a3181f5a0494b18 119 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 105 3.3E-12 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 R615_14180 8b3552d63cd1beb37a3181f5a0494b18 119 SUPERFAMILY SSF69754 4 112 7.46E-18 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like R615_08375 aaa4fdce7eed2c182148bbc69b06c4ac 607 Pfam PF13616 PPIC-type PPIASE domain 264 364 2.3E-26 T 12-10-2018 R615_08375 aaa4fdce7eed2c182148bbc69b06c4ac 607 Pfam PF13145 PPIC-type PPIASE domain 477 566 1.6E-6 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 R615_08375 aaa4fdce7eed2c182148bbc69b06c4ac 607 SUPERFAMILY SSF109998 41 237 1.41E-25 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily R615_08375 aaa4fdce7eed2c182148bbc69b06c4ac 607 SUPERFAMILY SSF54534 266 365 1.7E-27 T 12-10-2018 R615_08375 aaa4fdce7eed2c182148bbc69b06c4ac 607 Gene3D G3DSA:3.10.50.40 261 391 3.8E-31 T 12-10-2018 R615_08375 aaa4fdce7eed2c182148bbc69b06c4ac 607 Pfam PF13624 SurA N-terminal domain 1 163 2.6E-45 T 12-10-2018 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.9E-52 T 12-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.7E-30 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 PIRSF PIRSF002134 1 118 6.1E-40 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.534 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 SUPERFAMILY SSF46946 2 114 1.62E-43 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 Gene3D G3DSA:1.10.8.50 1 71 8.1E-27 T 12-10-2018 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 12-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16075 11b0ed7cfeeb60c12e3d7e418af68279 118 Gene3D G3DSA:4.10.910.10 72 118 2.6E-24 T 12-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_07255 c010a35e2dc90b71f7f98dac06593a5e 260 Pfam PF10972 Peptidoglycan-binding protein, CsiV 18 258 2.3E-26 T 12-10-2018 IPR021241 Peptidoglycan-binding protein, CsiV R615_12920 d3e869a4c3f9a384ae7f95498400fd91 222 PIRSF PIRSF023956 1 222 2.0E-66 T 12-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 R615_12920 d3e869a4c3f9a384ae7f95498400fd91 222 SUPERFAMILY SSF53335 1 197 1.03E-44 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_12920 d3e869a4c3f9a384ae7f95498400fd91 222 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 218 3.2E-71 T 12-10-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 R615_12920 d3e869a4c3f9a384ae7f95498400fd91 222 Gene3D G3DSA:3.40.50.150 1 221 6.8E-57 T 12-10-2018 R615_12920 d3e869a4c3f9a384ae7f95498400fd91 222 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 220 35.446 T 12-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 R615_12920 d3e869a4c3f9a384ae7f95498400fd91 222 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 218 4.9E-59 T 12-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 R615_03930 89e360777d8a08d40aaaa59c55470936 557 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 511 2.4E-21 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal R615_03930 89e360777d8a08d40aaaa59c55470936 557 PIRSF PIRSF003128 1 557 5.7E-164 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 R615_03930 89e360777d8a08d40aaaa59c55470936 557 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 553 2.1E-167 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 R615_03930 89e360777d8a08d40aaaa59c55470936 557 Gene3D G3DSA:3.40.50.300 228 554 1.2E-52 T 12-10-2018 R615_03930 89e360777d8a08d40aaaa59c55470936 557 Gene3D G3DSA:3.40.50.300 1 227 1.2E-47 T 12-10-2018 R615_03930 89e360777d8a08d40aaaa59c55470936 557 SUPERFAMILY SSF52540 1 215 4.89E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03930 89e360777d8a08d40aaaa59c55470936 557 SUPERFAMILY SSF52540 4 505 2.66E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05085 f1b750b3b1fefca829394393417cfe33 403 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 302 400 5.5E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05085 f1b750b3b1fefca829394393417cfe33 403 Pfam PF00512 His Kinase A (phospho-acceptor) domain 188 252 2.1E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05085 f1b750b3b1fefca829394393417cfe33 403 SUPERFAMILY SSF55785 64 164 2.58E-6 T 12-10-2018 IPR035965 PAS domain superfamily R615_05085 f1b750b3b1fefca829394393417cfe33 403 Gene3D G3DSA:1.10.287.130 172 250 2.7E-13 T 12-10-2018 R615_05085 f1b750b3b1fefca829394393417cfe33 403 SMART SM00388 187 253 6.4E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05085 f1b750b3b1fefca829394393417cfe33 403 Gene3D G3DSA:3.30.565.10 255 402 9.8E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05085 f1b750b3b1fefca829394393417cfe33 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 361 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05085 f1b750b3b1fefca829394393417cfe33 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 347 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05085 f1b750b3b1fefca829394393417cfe33 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 380 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05085 f1b750b3b1fefca829394393417cfe33 403 SMART SM00387 295 402 7.0E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05085 f1b750b3b1fefca829394393417cfe33 403 SUPERFAMILY SSF55874 259 399 3.54E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05085 f1b750b3b1fefca829394393417cfe33 403 SUPERFAMILY SSF47384 177 252 1.08E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_09840 36d7cc4bdc589958bbf976a52ffbe169 213 Gene3D G3DSA:3.20.20.70 3 205 5.0E-66 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_09840 36d7cc4bdc589958bbf976a52ffbe169 213 SUPERFAMILY SSF51366 4 203 5.34E-58 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 R615_09840 36d7cc4bdc589958bbf976a52ffbe169 213 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 6 201 3.7E-49 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 R615_09840 36d7cc4bdc589958bbf976a52ffbe169 213 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 206 40.923 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 R615_16875 a365d99830d46dd5e8180e9f79538b37 398 Gene3D G3DSA:2.30.130.10 3 74 3.4E-17 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 R615_16875 a365d99830d46dd5e8180e9f79538b37 398 SUPERFAMILY SSF53335 85 391 4.33E-70 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_16875 a365d99830d46dd5e8180e9f79538b37 398 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 142 337 1.0E-14 T 12-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 R615_16875 a365d99830d46dd5e8180e9f79538b37 398 Gene3D G3DSA:3.30.750.80 77 179 2.6E-28 T 12-10-2018 R615_16875 a365d99830d46dd5e8180e9f79538b37 398 SUPERFAMILY SSF88697 3 75 6.21E-10 T 12-10-2018 IPR015947 PUA-like superfamily R615_16875 a365d99830d46dd5e8180e9f79538b37 398 Gene3D G3DSA:3.40.50.150 185 396 3.1E-67 T 12-10-2018 R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 Gene3D G3DSA:3.30.1040.50 102 150 5.2E-13 T 12-10-2018 R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 Pfam PF00563 EAL domain 414 645 5.5E-44 T 12-10-2018 IPR001633 EAL domain R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 SUPERFAMILY SSF55073 243 397 4.24E-20 T 12-10-2018 IPR029787 Nucleotide cyclase R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 Gene3D G3DSA:3.30.70.270 220 394 8.2E-25 T 12-10-2018 R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 Pfam PF16448 LapD/MoxY periplasmic domain 24 146 5.4E-32 T 12-10-2018 IPR032244 LapD/MoxY, periplasmic domain R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 Gene3D G3DSA:3.20.20.450 395 651 3.9E-49 T 12-10-2018 IPR035919 EAL domain superfamily R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 235 394 8.5E-12 T 12-10-2018 IPR000160 GGDEF domain R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 SUPERFAMILY SSF141868 412 647 2.88E-48 T 12-10-2018 IPR035919 EAL domain superfamily R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 SMART SM00267 226 395 3.6E-16 T 12-10-2018 IPR000160 GGDEF domain R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 SMART SM00052 406 650 1.2E-27 T 12-10-2018 IPR001633 EAL domain R615_03455 7e12621cfd9798187f4ed4feaf5b5038 660 Pfam PF00990 Diguanylate cyclase, GGDEF domain 238 389 2.8E-21 T 12-10-2018 IPR000160 GGDEF domain R615_01105 8bbd7fd37448810abc4699ac7b803e77 199 Pfam PF13689 Domain of unknown function (DUF4154) 45 188 3.5E-41 T 12-10-2018 IPR025293 YfiR-like R615_16120 29e731cc02f3961647a900adb19bd9af 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 43.906 T 12-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16120 29e731cc02f3961647a900adb19bd9af 179 PIRSF PIRSF002161 1 179 1.8E-65 T 12-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16120 29e731cc02f3961647a900adb19bd9af 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 12-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16120 29e731cc02f3961647a900adb19bd9af 179 Pfam PF00281 Ribosomal protein L5 24 80 3.0E-26 T 12-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16120 29e731cc02f3961647a900adb19bd9af 179 Gene3D G3DSA:3.30.1440.10 1 179 1.9E-79 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16120 29e731cc02f3961647a900adb19bd9af 179 SUPERFAMILY SSF55282 3 179 1.46E-77 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16120 29e731cc02f3961647a900adb19bd9af 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.6E-42 T 12-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_01395 c35ba0471d0c839f5613499816087e02 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 297 2.3E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_01395 c35ba0471d0c839f5613499816087e02 303 Gene3D G3DSA:1.10.3720.10 14 303 3.1E-57 T 12-10-2018 IPR035906 MetI-like superfamily R615_01395 c35ba0471d0c839f5613499816087e02 303 SUPERFAMILY SSF161098 15 294 3.46E-57 T 12-10-2018 IPR035906 MetI-like superfamily R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 SUPERFAMILY SSF46785 2 93 2.35E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 Pfam PF01022 Bacterial regulatory protein, arsR family 22 67 1.0E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 Gene3D G3DSA:1.10.10.10 1 106 2.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 SMART SM00418 15 100 4.6E-18 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 1.6E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 1.6E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_08560 34d6e2e20cf9af0ac9db4a59c6df66e6 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 1.6E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 R615_13975 02057e3a82c83c9779cf87e4c72060d4 199 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 195 25.671 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 R615_13975 02057e3a82c83c9779cf87e4c72060d4 199 Gene3D G3DSA:3.40.50.300 1 199 2.0E-62 T 12-10-2018 R615_13975 02057e3a82c83c9779cf87e4c72060d4 199 Pfam PF01121 Dephospho-CoA kinase 2 177 2.2E-61 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 R615_13975 02057e3a82c83c9779cf87e4c72060d4 199 SUPERFAMILY SSF52540 1 191 5.04E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13975 02057e3a82c83c9779cf87e4c72060d4 199 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 185 5.4E-52 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 251 271 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 317 336 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 138 155 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 217 243 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 281 301 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 86 112 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 301 317 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 166 188 1.4E-89 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 634 647 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 401 420 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 119 142 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 358 375 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 10 34 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 320 335 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 196 211 3.8E-51 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 Pfam PF01578 Cytochrome C assembly protein 95 302 4.5E-55 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 61 644 4.4E-230 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12045 b6cb15a63c384a7f1798547e45848d6b 664 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 322 641 1.3E-116 T 12-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal R615_11190 21a7f8ae71bbcf9d752fb797caedcce5 292 SUPERFAMILY SSF54637 5 115 1.45E-33 T 12-10-2018 IPR029069 HotDog domain superfamily R615_11190 21a7f8ae71bbcf9d752fb797caedcce5 292 SUPERFAMILY SSF54637 117 285 5.49E-60 T 12-10-2018 IPR029069 HotDog domain superfamily R615_11190 21a7f8ae71bbcf9d752fb797caedcce5 292 Pfam PF13622 Thioesterase-like superfamily 33 283 2.2E-56 T 12-10-2018 R615_11190 21a7f8ae71bbcf9d752fb797caedcce5 292 Gene3D G3DSA:3.10.129.90 1 286 3.0E-99 T 12-10-2018 R615_08540 31249fd037d7911d6f3489d1f1460b50 356 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 283 289 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_08540 31249fd037d7911d6f3489d1f1460b50 356 Gene3D G3DSA:3.40.50.150 6 167 1.1E-32 T 12-10-2018 R615_08540 31249fd037d7911d6f3489d1f1460b50 356 Pfam PF05175 Methyltransferase small domain 185 350 2.6E-52 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 R615_08540 31249fd037d7911d6f3489d1f1460b50 356 SUPERFAMILY SSF53335 174 327 2.41E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_08540 31249fd037d7911d6f3489d1f1460b50 356 Gene3D G3DSA:3.40.50.150 173 356 2.7E-49 T 12-10-2018 R615_08540 31249fd037d7911d6f3489d1f1460b50 356 PIRSF PIRSF037565 3 355 9.3E-85 T 12-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 R615_17150 becec8b0cb4cdf71b8824b7b0e5df605 258 Pfam PF02390 Putative methyltransferase 86 253 2.4E-52 T 12-10-2018 R615_17150 becec8b0cb4cdf71b8824b7b0e5df605 258 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 79 258 4.0E-56 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 R615_17150 becec8b0cb4cdf71b8824b7b0e5df605 258 Gene3D G3DSA:3.40.50.150 51 258 8.8E-65 T 12-10-2018 R615_17150 becec8b0cb4cdf71b8824b7b0e5df605 258 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 45 258 28.419 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 R615_17150 becec8b0cb4cdf71b8824b7b0e5df605 258 SUPERFAMILY SSF53335 35 257 4.34E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_09575 d6f391e85141143e209e405ba260573a 280 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 173 9.7E-13 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_09575 d6f391e85141143e209e405ba260573a 280 Gene3D G3DSA:3.40.50.300 7 204 1.7E-25 T 12-10-2018 R615_09575 d6f391e85141143e209e405ba260573a 280 SMART SM00382 25 183 7.3E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_09575 d6f391e85141143e209e405ba260573a 280 SUPERFAMILY SSF52540 12 245 6.54E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02560 658e16bd9891cfcdfdc44bd350c967d6 505 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 196 492 9.3E-51 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath R615_02560 658e16bd9891cfcdfdc44bd350c967d6 505 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 29 116 2.7E-8 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 R615_00215 4370ad9d5953792b42589829cb7646df 230 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 209 2.9E-18 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 R615_00215 4370ad9d5953792b42589829cb7646df 230 Gene3D G3DSA:3.40.50.1240 1 224 6.2E-29 T 12-10-2018 IPR029033 Histidine phosphatase superfamily R615_00215 4370ad9d5953792b42589829cb7646df 230 SUPERFAMILY SSF53254 1 220 3.19E-31 T 12-10-2018 IPR029033 Histidine phosphatase superfamily R615_00215 4370ad9d5953792b42589829cb7646df 230 SMART SM00855 3 173 0.0011 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 R615_00715 0e2a57d9a80c59b296ac12c482e5380c 170 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 26 160 7.2E-23 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 Gene3D G3DSA:3.40.50.720 2 248 6.2E-57 T 12-10-2018 R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 1.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 SUPERFAMILY SSF51735 3 253 9.93E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 Pfam PF00106 short chain dehydrogenase 3 193 1.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.7E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.7E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.7E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.7E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_12255 c5a8b9f7c4173780d7726645db39ddc0 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.7E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 Pfam PF00512 His Kinase A (phospho-acceptor) domain 60 163 2.4E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 SUPERFAMILY SSF55874 153 309 1.3E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 Gene3D G3DSA:3.30.565.10 165 312 6.9E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 207 310 1.6E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 Gene3D G3DSA:1.10.287.130 38 158 9.4E-20 T 12-10-2018 R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 PRINTS PR00344 Bacterial sensor protein C-terminal signature 240 254 1.6E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 PRINTS PR00344 Bacterial sensor protein C-terminal signature 258 268 1.6E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 PRINTS PR00344 Bacterial sensor protein C-terminal signature 271 289 1.6E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 PRINTS PR00344 Bacterial sensor protein C-terminal signature 295 308 1.6E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_05560 08bf42bade5c5b1f99bdf058bea1901e 313 SMART SM00387 203 311 3.4E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_13500 5744528d36c7c49bcee1890de4aa1ea0 237 PIRSF PIRSF006755 1 234 6.3E-64 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 R615_13500 5744528d36c7c49bcee1890de4aa1ea0 237 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 227 27.624 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 R615_13500 5744528d36c7c49bcee1890de4aa1ea0 237 SUPERFAMILY SSF52540 1 221 2.18E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13500 5744528d36c7c49bcee1890de4aa1ea0 237 Gene3D G3DSA:3.40.50.300 2 223 6.5E-59 T 12-10-2018 R615_13500 5744528d36c7c49bcee1890de4aa1ea0 237 Pfam PF13500 AAA domain 2 209 2.3E-35 T 12-10-2018 R615_13500 5744528d36c7c49bcee1890de4aa1ea0 237 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 176 4.2E-44 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 R615_11545 16e4847af6baa2e50f5828c63fb7fba0 383 Pfam PF00487 Fatty acid desaturase 128 342 7.0E-27 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_17045 c2cda694ed0348c542c8b247c08810fd 157 Gene3D G3DSA:1.20.120.1370 1 155 1.0E-51 T 12-10-2018 IPR038309 Rsd/AlgQ superfamily R615_17045 c2cda694ed0348c542c8b247c08810fd 157 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 148 5.0E-55 T 12-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 R615_17045 c2cda694ed0348c542c8b247c08810fd 157 PIRSF PIRSF016548 1 157 2.1E-52 T 12-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 R615_12620 f7d5ffd4814b7a76ccc6513978800533 220 PIRSF PIRSF006170 1 220 4.9E-58 T 12-10-2018 IPR026039 Uncharacterised protein family UPF0070 R615_12620 f7d5ffd4814b7a76ccc6513978800533 220 Gene3D G3DSA:1.25.40.10 102 201 8.3E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12620 f7d5ffd4814b7a76ccc6513978800533 220 SUPERFAMILY SSF48452 102 201 5.38E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12620 f7d5ffd4814b7a76ccc6513978800533 220 Pfam PF09976 Tetratricopeptide repeat-like domain 15 215 4.7E-48 T 12-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 R615_05880 6cd60535da3504ed351a7213b5028595 383 SUPERFAMILY SSF56925 27 179 5.49E-15 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_05880 6cd60535da3504ed351a7213b5028595 383 SUPERFAMILY SSF103647 239 273 5.75E-5 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_05880 6cd60535da3504ed351a7213b5028595 383 SUPERFAMILY SSF103088 274 380 1.19E-33 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_05880 6cd60535da3504ed351a7213b5028595 383 Gene3D G3DSA:2.40.160.20 22 178 1.7E-19 T 12-10-2018 R615_05880 6cd60535da3504ed351a7213b5028595 383 Gene3D G3DSA:3.30.1330.60 248 383 8.4E-39 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_05880 6cd60535da3504ed351a7213b5028595 383 Pfam PF13505 Outer membrane protein beta-barrel domain 12 178 2.2E-15 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel R615_05880 6cd60535da3504ed351a7213b5028595 383 PRINTS PR01021 OMPA domain signature 327 343 1.6E-9 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_05880 6cd60535da3504ed351a7213b5028595 383 PRINTS PR01021 OMPA domain signature 312 327 1.6E-9 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_05880 6cd60535da3504ed351a7213b5028595 383 PRINTS PR01021 OMPA domain signature 282 304 1.6E-9 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_05880 6cd60535da3504ed351a7213b5028595 383 Pfam PF00691 OmpA family 281 376 5.7E-23 T 12-10-2018 IPR006665 OmpA-like domain R615_05185 02d7d49562ec6faf063812edcbe33338 177 Pfam PF03748 Flagellar basal body-associated protein FliL 76 177 3.9E-22 T 12-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 R615_02690 9aab7986b2f0179425f284512126246d 267 SMART SM00100 133 249 6.1E-18 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_02690 9aab7986b2f0179425f284512126246d 267 SUPERFAMILY SSF51206 51 136 4.32E-6 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_02690 9aab7986b2f0179425f284512126246d 267 Pfam PF00027 Cyclic nucleotide-binding domain 152 232 3.6E-19 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_02690 9aab7986b2f0179425f284512126246d 267 Gene3D G3DSA:2.60.120.10 47 125 3.4E-5 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_02690 9aab7986b2f0179425f284512126246d 267 Gene3D G3DSA:2.60.120.10 126 260 1.3E-31 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_02690 9aab7986b2f0179425f284512126246d 267 PRINTS PR00103 cAMP-dependent protein kinase signature 194 203 1.2E-10 T 12-10-2018 R615_02690 9aab7986b2f0179425f284512126246d 267 PRINTS PR00103 cAMP-dependent protein kinase signature 206 217 1.2E-10 T 12-10-2018 R615_02690 9aab7986b2f0179425f284512126246d 267 PRINTS PR00103 cAMP-dependent protein kinase signature 154 168 1.2E-10 T 12-10-2018 R615_02690 9aab7986b2f0179425f284512126246d 267 PRINTS PR00103 cAMP-dependent protein kinase signature 169 183 1.2E-10 T 12-10-2018 R615_02690 9aab7986b2f0179425f284512126246d 267 SUPERFAMILY SSF51206 130 259 4.06E-30 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_10905 8ab0d6172dc8281289fb6fc5bd863394 452 Pfam PF02412 Thrombospondin type 3 repeat 241 279 2.7E-7 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_10905 8ab0d6172dc8281289fb6fc5bd863394 452 Pfam PF02412 Thrombospondin type 3 repeat 219 240 0.0021 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_10905 8ab0d6172dc8281289fb6fc5bd863394 452 Pfam PF02412 Thrombospondin type 3 repeat 281 303 0.0059 T 12-10-2018 IPR003367 Thrombospondin, type 3-like repeat GO:0005509|GO:0007155 Reactome: R-HSA-186797 R615_10905 8ab0d6172dc8281289fb6fc5bd863394 452 SUPERFAMILY SSF103647 216 307 9.81E-15 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_10905 8ab0d6172dc8281289fb6fc5bd863394 452 Gene3D G3DSA:4.10.1080.10 211 256 1.1E-7 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_10905 8ab0d6172dc8281289fb6fc5bd863394 452 Gene3D G3DSA:4.10.1080.10 257 348 2.6E-10 T 12-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 R615_13825 5c119a71803a506c0d6c45509847831a 711 Gene3D G3DSA:1.10.1040.50 494 702 5.0E-57 T 12-10-2018 R615_13825 5c119a71803a506c0d6c45509847831a 711 SUPERFAMILY SSF48179 492 596 2.47E-18 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_13825 5c119a71803a506c0d6c45509847831a 711 SUPERFAMILY SSF52096 2 303 2.78E-67 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_13825 5c119a71803a506c0d6c45509847831a 711 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 197 1.9E-38 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 R615_13825 5c119a71803a506c0d6c45509847831a 711 Gene3D G3DSA:3.40.50.720 310 493 2.4E-65 T 12-10-2018 R615_13825 5c119a71803a506c0d6c45509847831a 711 SUPERFAMILY SSF48179 620 711 5.44E-16 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_13825 5c119a71803a506c0d6c45509847831a 711 SUPERFAMILY SSF51735 309 491 1.22E-57 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_13825 5c119a71803a506c0d6c45509847831a 711 Gene3D G3DSA:3.90.226.10 1 309 9.8E-98 T 12-10-2018 R615_13825 5c119a71803a506c0d6c45509847831a 711 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 493 590 1.7E-18 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_13825 5c119a71803a506c0d6c45509847831a 711 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 312 490 7.8E-61 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 R615_08650 7f829372b4f80191be1bd09a8aaa3ebe 233 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 103 223 3.0E-33 T 12-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 R615_08650 7f829372b4f80191be1bd09a8aaa3ebe 233 PIRSF PIRSF037208 2 232 6.3E-70 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 R615_08650 7f829372b4f80191be1bd09a8aaa3ebe 233 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 3 230 33.123 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 R615_08650 7f829372b4f80191be1bd09a8aaa3ebe 233 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 13 83 7.5E-15 T 12-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 R615_08650 7f829372b4f80191be1bd09a8aaa3ebe 233 SUPERFAMILY SSF55729 82 230 8.5E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_03770 9e942b11b1d3df97b9519d7dff1d749c 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 216 1.1E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_03770 9e942b11b1d3df97b9519d7dff1d749c 227 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 13 220 1.3E-72 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 R615_03770 9e942b11b1d3df97b9519d7dff1d749c 227 Gene3D G3DSA:1.10.3720.10 1 222 2.5E-55 T 12-10-2018 IPR035906 MetI-like superfamily R615_03770 9e942b11b1d3df97b9519d7dff1d749c 227 SUPERFAMILY SSF161098 7 218 2.09E-47 T 12-10-2018 IPR035906 MetI-like superfamily R615_05770 dfb519fc91c35bedd1eb5d7c13f3f54d 486 Pfam PF13007 Transposase C of IS166 homeodomain 1 81 8.6E-14 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain R615_05770 dfb519fc91c35bedd1eb5d7c13f3f54d 486 Pfam PF13005 zinc-finger binding domain of transposase IS66 90 132 3.2E-11 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 R615_05770 dfb519fc91c35bedd1eb5d7c13f3f54d 486 Pfam PF13817 IS66 C-terminal element 441 478 1.1E-15 T 12-10-2018 IPR039552 Transposase IS66, C-terminal R615_05770 dfb519fc91c35bedd1eb5d7c13f3f54d 486 Pfam PF03050 Transposase IS66 family 147 434 1.8E-101 T 12-10-2018 IPR004291 Transposase, IS66 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 Gene3D G3DSA:3.40.30.10 1 108 1.0E-36 T 12-10-2018 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 SUPERFAMILY SSF52833 2 107 1.36E-41 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 PIRSF PIRSF000077 2 108 1.6E-44 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 PRINTS PR00421 Thioredoxin family signature 24 32 5.8E-10 T 12-10-2018 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 PRINTS PR00421 Thioredoxin family signature 32 41 5.8E-10 T 12-10-2018 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 PRINTS PR00421 Thioredoxin family signature 72 83 5.8E-10 T 12-10-2018 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 3.3E-40 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 R615_16665 5412f6cf3cb94563cc54ff5ac4fdd6df 108 Pfam PF00085 Thioredoxin 5 106 4.5E-34 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 R615_06585 4e8b5362dccc8cd4a616456c7535b578 329 Pfam PF07859 alpha/beta hydrolase fold 61 151 1.3E-7 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 R615_06585 4e8b5362dccc8cd4a616456c7535b578 329 SUPERFAMILY SSF53474 31 183 5.3E-22 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_06585 4e8b5362dccc8cd4a616456c7535b578 329 Gene3D G3DSA:3.40.50.1820 22 292 7.4E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16170 18ca86772da4bbc8c3c3bbfdbee100b9 98 SUPERFAMILY SSF54189 1 92 1.62E-30 T 12-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16170 18ca86772da4bbc8c3c3bbfdbee100b9 98 Pfam PF00276 Ribosomal protein L23 8 94 1.2E-30 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 R615_16170 18ca86772da4bbc8c3c3bbfdbee100b9 98 Gene3D G3DSA:3.30.70.330 1 98 1.2E-34 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily R615_16170 18ca86772da4bbc8c3c3bbfdbee100b9 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 22.367 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 SMART SM01086 242 331 1.6E-8 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 180 194 3.2E-24 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 146 164 3.2E-24 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 113 131 3.2E-24 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 68 86 3.2E-24 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 Pfam PF07724 AAA domain (Cdc48 subfamily) 64 234 1.6E-34 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 242 312 1.4E-13 T 12-10-2018 IPR019489 Clp ATPase, C-terminal R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 SMART SM00382 64 231 7.5E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 SUPERFAMILY SSF52540 23 310 3.17E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 Gene3D G3DSA:3.40.50.300 25 241 7.9E-55 T 12-10-2018 R615_04240 652bae9dbf6f5260870bd0545c9f95ad 357 Gene3D G3DSA:1.10.8.60 242 334 1.7E-14 T 12-10-2018 R615_14095 da303cbf3aeecd697dfe096214222f58 778 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 170 1.3E-16 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_14095 da303cbf3aeecd697dfe096214222f58 778 Gene3D G3DSA:2.40.170.20 346 741 1.1E-25 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_14095 da303cbf3aeecd697dfe096214222f58 778 SUPERFAMILY SSF56935 49 719 3.11E-61 T 12-10-2018 R615_14095 da303cbf3aeecd697dfe096214222f58 778 Gene3D G3DSA:2.170.130.10 45 181 6.7E-27 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_10470 d5b488caf5a06a9153e6f9a786e2aad0 477 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 269 471 2.2E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_10470 d5b488caf5a06a9153e6f9a786e2aad0 477 Gene3D G3DSA:1.10.3720.10 241 469 3.3E-23 T 12-10-2018 IPR035906 MetI-like superfamily R615_10470 d5b488caf5a06a9153e6f9a786e2aad0 477 SUPERFAMILY SSF161098 251 451 1.2E-20 T 12-10-2018 IPR035906 MetI-like superfamily R615_10210 17d170dd0fd5ef59bc446d45c2a0fe64 334 Gene3D G3DSA:1.10.3720.10 117 326 1.1E-18 T 12-10-2018 IPR035906 MetI-like superfamily R615_10210 17d170dd0fd5ef59bc446d45c2a0fe64 334 SUPERFAMILY SSF161098 119 317 8.76E-21 T 12-10-2018 IPR035906 MetI-like superfamily R615_10210 17d170dd0fd5ef59bc446d45c2a0fe64 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 142 325 3.0E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_16815 8d4db401ab1250266dc6b8a3723da27b 357 SUPERFAMILY SSF52151 33 333 5.23E-15 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase R615_08055 c1e0b4e412bdf0ee6557b5d24331dd1a 462 SUPERFAMILY SSF55073 220 409 2.67E-58 T 12-10-2018 IPR029787 Nucleotide cyclase R615_08055 c1e0b4e412bdf0ee6557b5d24331dd1a 462 Gene3D G3DSA:3.30.70.1230 218 415 3.2E-74 T 12-10-2018 IPR029787 Nucleotide cyclase R615_08055 c1e0b4e412bdf0ee6557b5d24331dd1a 462 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 225 407 7.8E-38 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 R615_08055 c1e0b4e412bdf0ee6557b5d24331dd1a 462 SMART SM00044 186 389 9.6E-26 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 R615_08055 c1e0b4e412bdf0ee6557b5d24331dd1a 462 Pfam PF05230 MASE2 domain 19 106 3.4E-20 T 12-10-2018 IPR007894 MASE2 R615_09355 021546ba7ecb7d21ed8234c5bab224b2 406 Gene3D G3DSA:3.30.70.270 214 393 3.1E-49 T 12-10-2018 R615_09355 021546ba7ecb7d21ed8234c5bab224b2 406 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 223 388 2.3E-39 T 12-10-2018 IPR000160 GGDEF domain R615_09355 021546ba7ecb7d21ed8234c5bab224b2 406 SUPERFAMILY SSF55073 231 391 8.63E-41 T 12-10-2018 IPR029787 Nucleotide cyclase R615_09355 021546ba7ecb7d21ed8234c5bab224b2 406 SMART SM00267 215 392 2.3E-45 T 12-10-2018 IPR000160 GGDEF domain R615_09355 021546ba7ecb7d21ed8234c5bab224b2 406 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 386 1.1E-35 T 12-10-2018 IPR000160 GGDEF domain R615_02970 0404bc995a7588425a136f1cb6c68afd 109 Pfam PF00639 PPIC-type PPIASE domain 17 88 3.2E-10 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 R615_02970 0404bc995a7588425a136f1cb6c68afd 109 Gene3D G3DSA:3.10.50.40 2 90 1.2E-16 T 12-10-2018 R615_02970 0404bc995a7588425a136f1cb6c68afd 109 SUPERFAMILY SSF54534 2 88 2.88E-16 T 12-10-2018 R615_11095 bf782690753069925031cbfe6a673540 354 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 352 3.3E-118 T 12-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 R615_11095 bf782690753069925031cbfe6a673540 354 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 352 7.4E-59 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 R615_12880 fa3fd5ee5e79831c0034aa669d3684a2 262 Pfam PF11932 Protein of unknown function (DUF3450) 15 255 2.2E-90 T 12-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 R615_12880 fa3fd5ee5e79831c0034aa669d3684a2 262 PIRSF PIRSF028069 8 262 6.4E-80 T 12-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 Pfam PF01593 Flavin containing amine oxidoreductase 125 318 5.2E-6 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 Gene3D G3DSA:3.50.50.60 4 319 1.0E-103 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 SUPERFAMILY SSF51905 1 319 2.72E-32 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 60 7.9E-13 T 12-10-2018 R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 PRINTS PR00419 Adrenodoxin reductase family signature 26 39 8.3E-6 T 12-10-2018 R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 PRINTS PR00419 Adrenodoxin reductase family signature 3 25 8.3E-6 T 12-10-2018 R615_03660 7baa619779bf90fdc08d65b0e905cfff 321 Gene3D G3DSA:3.90.660.10 42 284 1.0E-103 T 12-10-2018 R615_11810 8701c8448a863ef7d75e0589dc81760a 95 Pfam PF12836 Helix-hairpin-helix motif 31 91 1.1E-23 T 12-10-2018 R615_11810 8701c8448a863ef7d75e0589dc81760a 95 SUPERFAMILY SSF47781 25 90 1.78E-26 T 12-10-2018 IPR010994 RuvA domain 2-like R615_11810 8701c8448a863ef7d75e0589dc81760a 95 Gene3D G3DSA:1.10.150.280 22 94 5.0E-24 T 12-10-2018 R615_11810 8701c8448a863ef7d75e0589dc81760a 95 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 32 92 1.4E-23 T 12-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain R615_11810 8701c8448a863ef7d75e0589dc81760a 95 SMART SM00278 72 91 17.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_11810 8701c8448a863ef7d75e0589dc81760a 95 SMART SM00278 42 61 0.011 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 R615_01065 daa237a844594d4e88f2931444119bcf 125 SUPERFAMILY SSF141734 2 120 1.27E-49 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 R615_01065 daa237a844594d4e88f2931444119bcf 125 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 103 1.0E-23 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 R615_01065 daa237a844594d4e88f2931444119bcf 125 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 3 107 32.378 T 12-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 R615_01065 daa237a844594d4e88f2931444119bcf 125 Gene3D G3DSA:3.10.20.400 2 94 7.5E-38 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 R615_01065 daa237a844594d4e88f2931444119bcf 125 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 103 2.8E-34 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 R615_01885 be325de4f0ab2829c4e6ac30225129d9 130 SUPERFAMILY SSF54211 5 130 4.17E-48 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_01885 be325de4f0ab2829c4e6ac30225129d9 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 9.9E-47 T 12-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 R615_01885 be325de4f0ab2829c4e6ac30225129d9 130 Gene3D G3DSA:3.30.230.10 1 130 5.1E-54 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_01885 be325de4f0ab2829c4e6ac30225129d9 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 12-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 R615_01885 be325de4f0ab2829c4e6ac30225129d9 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.56 T 12-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid R615_15640 62981d87c95cf82ef05bcf64b6d4b139 182 Gene3D G3DSA:3.40.630.30 4 179 1.3E-16 T 12-10-2018 R615_15640 62981d87c95cf82ef05bcf64b6d4b139 182 Pfam PF13302 Acetyltransferase (GNAT) domain 15 148 3.3E-6 T 12-10-2018 IPR000182 GNAT domain R615_15640 62981d87c95cf82ef05bcf64b6d4b139 182 SUPERFAMILY SSF55729 5 173 5.04E-13 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_11870 90367ca17776b95990d335ef777af2bc 693 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 134 417 1.9E-44 T 12-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 R615_11870 90367ca17776b95990d335ef777af2bc 693 Pfam PF05547 Immune inhibitor A peptidase M6 143 359 4.7E-11 T 12-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 R615_01980 4702e2977574b1c5fe6472ec63a93972 86 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 5 84 1.9E-35 T 12-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 R615_01980 4702e2977574b1c5fe6472ec63a93972 86 SUPERFAMILY SSF143011 1 83 1.83E-29 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_01980 4702e2977574b1c5fe6472ec63a93972 86 Gene3D G3DSA:3.30.2310.20 1 84 1.7E-40 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_01980 4702e2977574b1c5fe6472ec63a93972 86 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 5 84 3.0E-39 T 12-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 R615_08385 3bfd95dad013b810bc8bb151374b91e3 527 SUPERFAMILY SSF53850 52 282 3.26E-25 T 12-10-2018 R615_08385 3bfd95dad013b810bc8bb151374b91e3 527 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 320 1.4E-17 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain R615_08385 3bfd95dad013b810bc8bb151374b91e3 527 Gene3D G3DSA:3.40.190.10 34 338 2.4E-31 T 12-10-2018 R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 Gene3D G3DSA:3.20.20.10 1 228 8.5E-83 T 12-10-2018 IPR029066 PLP-binding barrel R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 226 32.726 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 77 91 - T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 PIRSF PIRSF004848 1 228 3.4E-73 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 Pfam PF01168 Alanine racemase, N-terminal domain 27 227 3.0E-25 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 SUPERFAMILY SSF51419 1 225 2.88E-79 T 12-10-2018 IPR029066 PLP-binding barrel R615_16495 66a5c8b82670f6f508154c3ed5ffcf90 228 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 227 2.1E-81 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Pfam PF00873 AcrB/AcrD/AcrF family 23 1021 6.5E-175 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 SUPERFAMILY SSF82866 799 1023 1.96E-46 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 SUPERFAMILY SSF82714 726 796 3.14E-9 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 SUPERFAMILY SSF82693 47 136 1.88E-21 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:3.30.70.1430 567 666 2.7E-272 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 44 62 6.7E-21 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 6.7E-21 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 6.7E-21 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 6.7E-21 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 6.7E-21 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:3.30.70.1430 46 810 2.7E-272 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:1.20.1640.10 18 509 2.7E-272 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 SUPERFAMILY SSF82714 185 267 1.57E-13 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:3.30.2090.10 181 273 2.7E-272 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 SUPERFAMILY SSF82693 145 324 1.12E-10 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:3.30.70.1320 139 326 2.7E-272 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 SUPERFAMILY SSF82866 296 490 2.22E-38 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:3.30.70.1440 667 858 2.7E-272 T 12-10-2018 R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:3.30.2090.10 715 802 2.7E-272 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains R615_10765 11c2b2af945a7f6ba2c62ac342fb5f1e 1038 Gene3D G3DSA:1.20.1640.10 510 1019 2.7E-272 T 12-10-2018 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Pfam PF01565 FAD binding domain 44 182 9.2E-37 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Gene3D G3DSA:3.30.70.2190 220 336 6.4E-26 T 12-10-2018 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Gene3D G3DSA:3.30.465.10 98 218 7.1E-40 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 SUPERFAMILY SSF56176 7 220 1.73E-68 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Gene3D G3DSA:1.10.45.10 425 465 2.0E-13 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 SUPERFAMILY SSF55103 196 465 7.03E-57 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Pfam PF02913 FAD linked oxidases, C-terminal domain 220 464 2.1E-58 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Gene3D G3DSA:3.30.43.10 1 95 8.6E-28 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 R615_15275 f05f7e84a303b021e4e0a6450fdf215b 467 Gene3D G3DSA:3.30.70.2740 339 424 1.8E-25 T 12-10-2018 R615_04330 ec0ad418cf8797d09cb5555b4049520d 138 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 116 5.6E-22 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 R615_04330 ec0ad418cf8797d09cb5555b4049520d 138 Gene3D G3DSA:2.170.150.70 5 118 2.7E-13 T 12-10-2018 R615_04330 ec0ad418cf8797d09cb5555b4049520d 138 SUPERFAMILY SSF51316 1 136 1.0E-42 T 12-10-2018 IPR011057 Mss4-like superfamily R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 SUPERFAMILY SSF53067 4 251 1.5E-92 T 12-10-2018 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 SUPERFAMILY SSF53067 251 489 5.74E-76 T 12-10-2018 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 PIRSF PIRSF000538 2 492 3.9E-168 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 Hamap MF_00186 Glycerol kinase [glpK]. 2 492 53.87 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 Gene3D G3DSA:3.30.420.40 250 490 2.3E-82 T 12-10-2018 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 248 5.8E-77 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 132 144 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 257 445 5.6E-55 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 Gene3D G3DSA:3.30.420.40 1 249 4.3E-103 T 12-10-2018 R615_05360 ed9ad7710f01c7c564af5fb9b5cf73a8 492 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 490 3.2E-211 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 R615_16675 a9380a868c82685925c70a555aec0c7a 362 SUPERFAMILY SSF53850 159 297 9.77E-6 T 12-10-2018 R615_16675 a9380a868c82685925c70a555aec0c7a 362 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 327 6.0E-62 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 R615_16675 a9380a868c82685925c70a555aec0c7a 362 Gene3D G3DSA:3.40.190.170 38 343 6.6E-133 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_16675 a9380a868c82685925c70a555aec0c7a 362 PIRSF PIRSF039026 2 362 1.3E-140 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like R615_16675 a9380a868c82685925c70a555aec0c7a 362 Gene3D G3DSA:3.40.190.10 158 329 6.6E-133 T 12-10-2018 R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 Gene3D G3DSA:3.20.20.450 579 829 1.6E-84 T 12-10-2018 IPR035919 EAL domain superfamily R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 SMART SM00052 575 817 3.2E-96 T 12-10-2018 IPR001633 EAL domain R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 Pfam PF00563 EAL domain 581 812 1.0E-65 T 12-10-2018 IPR001633 EAL domain R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 SUPERFAMILY SSF55073 410 561 3.14E-41 T 12-10-2018 IPR029787 Nucleotide cyclase R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 SMART SM00267 394 565 1.7E-53 T 12-10-2018 IPR000160 GGDEF domain R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 401 562 2.3E-36 T 12-10-2018 IPR000160 GGDEF domain R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 Gene3D G3DSA:3.30.70.270 399 578 6.4E-49 T 12-10-2018 R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 Pfam PF00990 Diguanylate cyclase, GGDEF domain 405 558 2.4E-42 T 12-10-2018 IPR000160 GGDEF domain R615_13550 61e6b5f964c65d5fc4f21679a0a4edd8 842 SUPERFAMILY SSF141868 581 823 9.68E-78 T 12-10-2018 IPR035919 EAL domain superfamily R615_02530 92b509b61e755cfb9c1257758c1f3b0b 152 Pfam PF13279 Thioesterase-like superfamily 15 132 5.1E-18 T 12-10-2018 R615_02530 92b509b61e755cfb9c1257758c1f3b0b 152 Gene3D G3DSA:3.10.129.10 4 136 1.2E-37 T 12-10-2018 R615_02530 92b509b61e755cfb9c1257758c1f3b0b 152 SUPERFAMILY SSF54637 6 141 8.75E-31 T 12-10-2018 IPR029069 HotDog domain superfamily R615_15985 cf926c0e5660fa994c64f2edd948fcb6 144 SUPERFAMILY SSF82784 4 143 9.81E-38 T 12-10-2018 IPR036102 OsmC/Ohr superfamily R615_15985 cf926c0e5660fa994c64f2edd948fcb6 144 Gene3D G3DSA:3.30.300.20 1 144 1.3E-40 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta R615_15985 cf926c0e5660fa994c64f2edd948fcb6 144 Pfam PF02566 OsmC-like protein 42 143 1.3E-19 T 12-10-2018 IPR003718 OsmC/Ohr family R615_06900 a96a5ee8d5b63cb1891261237ccb19b4 278 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 17 271 35.884 T 12-10-2018 IPR005583 Peroxide stress protein YaaA R615_06900 a96a5ee8d5b63cb1891261237ccb19b4 278 Pfam PF03883 Peroxide stress protein YaaA 17 259 4.0E-89 T 12-10-2018 IPR005583 Peroxide stress protein YaaA R615_02140 83043d73a7323ff242fd2278188e6650 325 SMART SM00116 212 260 1.2 T 12-10-2018 IPR000644 CBS domain R615_02140 83043d73a7323ff242fd2278188e6650 325 SMART SM00116 277 324 2.8E-4 T 12-10-2018 IPR000644 CBS domain R615_02140 83043d73a7323ff242fd2278188e6650 325 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 47 314 9.4E-108 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 R615_02140 83043d73a7323ff242fd2278188e6650 325 PIRSF PIRSF004692 1 325 9.6E-134 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 R615_02140 83043d73a7323ff242fd2278188e6650 325 Gene3D G3DSA:3.10.580.10 198 322 2.5E-46 T 12-10-2018 R615_02140 83043d73a7323ff242fd2278188e6650 325 Gene3D G3DSA:3.40.50.10490 6 197 6.5E-64 T 12-10-2018 R615_02140 83043d73a7323ff242fd2278188e6650 325 Pfam PF01380 SIS domain 42 174 4.6E-30 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 R615_02140 83043d73a7323ff242fd2278188e6650 325 Pfam PF00571 CBS domain 271 322 1.9E-8 T 12-10-2018 IPR000644 CBS domain R615_02140 83043d73a7323ff242fd2278188e6650 325 Pfam PF00571 CBS domain 203 259 7.3E-4 T 12-10-2018 IPR000644 CBS domain R615_02140 83043d73a7323ff242fd2278188e6650 325 SUPERFAMILY SSF53697 12 321 5.34E-68 T 12-10-2018 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Gene3D G3DSA:3.90.199.10 36 485 1.1E-176 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Gene3D G3DSA:3.30.1360.40 242 335 1.1E-176 T 12-10-2018 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 651 683 2.6E-5 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 639 4.9 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 471 2.4E-133 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 SUPERFAMILY SSF56719 35 487 8.11E-155 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 SMART SM00434 15 465 1.9E-231 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 SUPERFAMILY SSF101904 501 745 4.45E-53 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Gene3D G3DSA:1.10.268.10 373 458 1.1E-176 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Gene3D G3DSA:2.120.10.90 504 748 6.7E-16 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 744 0.0 T 12-10-2018 R615_00115 405a6830f1d36b705078ec96ceabcd6c 753 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 33.808 T 12-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 R615_10770 65c10e8746dcda53632f399690ff22ea 379 SUPERFAMILY SSF111369 59 278 1.19E-16 T 12-10-2018 R615_10770 65c10e8746dcda53632f399690ff22ea 379 Gene3D G3DSA:2.40.420.20 306 361 1.2E-40 T 12-10-2018 R615_10770 65c10e8746dcda53632f399690ff22ea 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 278 1.1E-16 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain R615_10770 65c10e8746dcda53632f399690ff22ea 379 Gene3D G3DSA:2.40.30.170 61 305 1.2E-40 T 12-10-2018 R615_10770 65c10e8746dcda53632f399690ff22ea 379 Gene3D G3DSA:1.10.287.470 104 181 1.2E-40 T 12-10-2018 R615_10770 65c10e8746dcda53632f399690ff22ea 379 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 357 7.8E-37 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 R615_10770 65c10e8746dcda53632f399690ff22ea 379 Gene3D G3DSA:2.40.50.100 67 215 1.2E-40 T 12-10-2018 R615_11200 9407297484f188a5a8f6e60ee998a81d 459 Gene3D G3DSA:3.30.70.330 386 459 6.1E-20 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily R615_11200 9407297484f188a5a8f6e60ee998a81d 459 SMART SM00487 23 220 6.1E-62 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_11200 9407297484f188a5a8f6e60ee998a81d 459 Pfam PF00270 DEAD/DEAH box helicase 28 194 1.8E-47 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_11200 9407297484f188a5a8f6e60ee998a81d 459 SUPERFAMILY SSF52540 72 353 8.07E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11200 9407297484f188a5a8f6e60ee998a81d 459 Pfam PF00271 Helicase conserved C-terminal domain 243 337 7.1E-27 T 12-10-2018 IPR001650 Helicase, C-terminal R615_11200 9407297484f188a5a8f6e60ee998a81d 459 Gene3D G3DSA:3.40.50.300 211 376 2.9E-48 T 12-10-2018 R615_11200 9407297484f188a5a8f6e60ee998a81d 459 Pfam PF03880 DbpA RNA binding domain 387 456 1.1E-21 T 12-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain R615_11200 9407297484f188a5a8f6e60ee998a81d 459 Gene3D G3DSA:3.40.50.300 1 210 1.4E-74 T 12-10-2018 R615_11200 9407297484f188a5a8f6e60ee998a81d 459 SMART SM00490 256 337 3.9E-30 T 12-10-2018 IPR001650 Helicase, C-terminal R615_11200 9407297484f188a5a8f6e60ee998a81d 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 Gene3D G3DSA:3.40.50.1100 67 163 9.7E-132 T 12-10-2018 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 21 521 3.7E-235 T 12-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 35 323 1.2E-82 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 Gene3D G3DSA:3.40.1020.10 345 522 2.0E-69 T 12-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 SUPERFAMILY SSF53686 16 372 5.37E-107 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 SUPERFAMILY SSF55021 427 521 1.56E-26 T 12-10-2018 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 59 72 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 Gene3D G3DSA:3.40.50.1100 31 334 9.7E-132 T 12-10-2018 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 436 521 3.7E-22 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 R615_16635 ef2fe0b22212e9b6749cc583cc0286a6 522 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 337 426 1.5E-22 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 24 68 1.1E-8 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 Gene3D G3DSA:3.40.50.620 1 179 6.5E-76 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 SUPERFAMILY SSF52374 1 282 1.2E-102 T 12-10-2018 R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 Gene3D G3DSA:3.30.1300.10 180 282 2.0E-28 T 12-10-2018 R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 Pfam PF02569 Pantoate-beta-alanine ligase 4 277 4.9E-101 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 279 1.1E-100 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 R615_02605 99097a4e1d41b8a4cf35355925bc8ff5 286 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 38.747 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 Gene3D G3DSA:3.40.190.290 91 296 9.2E-63 T 12-10-2018 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 SUPERFAMILY SSF53850 89 296 3.8E-47 T 12-10-2018 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.7E-23 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 Pfam PF03466 LysR substrate binding domain 89 294 1.2E-48 T 12-10-2018 IPR005119 LysR, substrate-binding R615_06920 886e7e13b7642a00a8b417234c69bd90 298 SUPERFAMILY SSF46785 4 88 4.82E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_06920 886e7e13b7642a00a8b417234c69bd90 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_06920 886e7e13b7642a00a8b417234c69bd90 298 Gene3D G3DSA:1.10.10.10 3 90 2.9E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_14335 809e4c3ff15da5eae4306372435a8473 288 SUPERFAMILY SSF56645 64 148 9.77E-7 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_06145 8acfa5bd9ae2af31d1fac40335a203c6 221 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 24 220 8.1E-59 T 12-10-2018 IPR016476 SH3 domain protein R615_06145 8acfa5bd9ae2af31d1fac40335a203c6 221 Pfam PF08239 Bacterial SH3 domain 32 83 2.2E-10 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type R615_06145 8acfa5bd9ae2af31d1fac40335a203c6 221 Gene3D G3DSA:2.30.30.40 22 84 3.1E-10 T 12-10-2018 R615_06145 8acfa5bd9ae2af31d1fac40335a203c6 221 SMART SM00287 20 86 9.1E-6 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type R615_06145 8acfa5bd9ae2af31d1fac40335a203c6 221 PIRSF PIRSF006158 1 221 1.0E-45 T 12-10-2018 IPR016476 SH3 domain protein R615_03825 53fb340ccf56e2a15728a962a7fb6842 412 Pfam PF00487 Fatty acid desaturase 111 386 2.9E-15 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_03400 ecd708134da7f3e97eacf046fb52f4b3 216 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 56 214 7.8E-36 T 12-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 R615_03400 ecd708134da7f3e97eacf046fb52f4b3 216 SUPERFAMILY SSF47240 49 131 7.22E-16 T 12-10-2018 IPR009078 Ferritin-like superfamily R615_03400 ecd708134da7f3e97eacf046fb52f4b3 216 Gene3D G3DSA:1.20.1260.10 49 206 2.1E-5 T 12-10-2018 IPR012347 Ferritin-like R615_03400 ecd708134da7f3e97eacf046fb52f4b3 216 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 15 216 28.038 T 12-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 R615_02215 65f10d20ca7cbae2570029e6c4233b6d 310 SUPERFAMILY SSF103481 50 153 1.37E-9 T 12-10-2018 R615_02215 65f10d20ca7cbae2570029e6c4233b6d 310 SUPERFAMILY SSF103481 229 306 5.23E-14 T 12-10-2018 R615_02215 65f10d20ca7cbae2570029e6c4233b6d 310 Pfam PF00892 EamA-like transporter family 174 305 4.5E-19 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_02215 65f10d20ca7cbae2570029e6c4233b6d 310 Pfam PF00892 EamA-like transporter family 15 151 4.3E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_09680 6b8c94c9593bd1b84fb5610a5d5a35d5 391 Gene3D G3DSA:3.40.630.10 38 331 1.2E-32 T 12-10-2018 R615_09680 6b8c94c9593bd1b84fb5610a5d5a35d5 391 ProSitePatterns PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature. 102 124 - T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 R615_09680 6b8c94c9593bd1b84fb5610a5d5a35d5 391 SUPERFAMILY SSF53187 80 361 6.95E-47 T 12-10-2018 R615_09680 6b8c94c9593bd1b84fb5610a5d5a35d5 391 Pfam PF00246 Zinc carboxypeptidase 90 259 6.7E-16 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 R615_09680 6b8c94c9593bd1b84fb5610a5d5a35d5 391 SMART SM00631 39 345 0.0029 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 R615_06460 7185214f7197e10ac9249ab961e2490a 395 Gene3D G3DSA:3.30.565.10 272 391 1.3E-19 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_06460 7185214f7197e10ac9249ab961e2490a 395 SUPERFAMILY SSF55874 276 391 2.86E-10 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_06460 7185214f7197e10ac9249ab961e2490a 395 Pfam PF07730 Histidine kinase 203 268 2.3E-10 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 ProSitePatterns PS00321 recA signature. 213 221 - T 12-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 323 2.4E-167 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 Pfam PF00154 recA bacterial DNA recombination protein 7 267 3.9E-141 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 Gene3D G3DSA:3.40.50.300 26 267 2.4E-84 T 12-10-2018 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 SUPERFAMILY SSF54752 269 324 2.62E-19 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal R615_14680 bc2b89ea781180589aeb9058b835cd69 345 PRINTS PR00142 RecA protein signature 243 272 1.9E-83 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 PRINTS PR00142 RecA protein signature 165 194 1.9E-83 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 PRINTS PR00142 RecA protein signature 93 122 1.9E-83 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 PRINTS PR00142 RecA protein signature 297 314 1.9E-83 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 PRINTS PR00142 RecA protein signature 210 238 1.9E-83 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 PRINTS PR00142 RecA protein signature 127 156 1.9E-83 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_14680 bc2b89ea781180589aeb9058b835cd69 345 SMART SM00382 57 228 1.7E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_14680 bc2b89ea781180589aeb9058b835cd69 345 Gene3D G3DSA:3.30.250.10 269 344 1.2E-23 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal R615_14680 bc2b89ea781180589aeb9058b835cd69 345 SUPERFAMILY SSF52540 4 267 3.04E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_14680 bc2b89ea781180589aeb9058b835cd69 345 Hamap MF_00268 Protein RecA [recA]. 5 329 50.275 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 R615_00725 ef03cfbd4c1150e93b8de457c03c9e64 457 SUPERFAMILY SSF161098 177 444 2.22E-31 T 12-10-2018 IPR035906 MetI-like superfamily R615_00725 ef03cfbd4c1150e93b8de457c03c9e64 457 Gene3D G3DSA:1.10.3720.10 224 455 6.1E-34 T 12-10-2018 IPR035906 MetI-like superfamily R615_00725 ef03cfbd4c1150e93b8de457c03c9e64 457 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 160 452 1.8E-88 T 12-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 R615_00725 ef03cfbd4c1150e93b8de457c03c9e64 457 Pfam PF12501 Phosphate ATP-binding cassette transporter 8 175 7.5E-31 T 12-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 R615_00725 ef03cfbd4c1150e93b8de457c03c9e64 457 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 244 445 1.2E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_15435 8df2f98619ad0c3edbeb0d27783d67b2 299 Pfam PF01522 Polysaccharide deacetylase 74 180 5.1E-11 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 R615_15435 8df2f98619ad0c3edbeb0d27783d67b2 299 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 3 297 8.7E-164 T 12-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 R615_15435 8df2f98619ad0c3edbeb0d27783d67b2 299 Gene3D G3DSA:3.20.20.370 1 299 2.1E-105 T 12-10-2018 R615_15435 8df2f98619ad0c3edbeb0d27783d67b2 299 SUPERFAMILY SSF88713 2 298 2.7E-95 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 R615_05435 7f2ebf83fdaf829eb9564124aeada43f 272 Pfam PF01435 Peptidase family M48 65 245 1.3E-32 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 R615_01050 674435cea82f806abb6efcaedcc07925 82 Pfam PF02416 mttA/Hcf106 family 5 54 3.2E-14 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 R615_01050 674435cea82f806abb6efcaedcc07925 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 82 22.674 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 R615_01050 674435cea82f806abb6efcaedcc07925 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 49 1.5E-21 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 R615_02575 032d2d0280e8780365b3379e631fd98c 247 Gene3D G3DSA:1.10.720.60 23 111 1.0E-74 T 12-10-2018 R615_02575 032d2d0280e8780365b3379e631fd98c 247 Gene3D G3DSA:3.40.50.1000 12 230 1.0E-74 T 12-10-2018 IPR023214 HAD superfamily R615_02575 032d2d0280e8780365b3379e631fd98c 247 SUPERFAMILY SSF56784 8 239 1.78E-56 T 12-10-2018 IPR036412 HAD-like superfamily R615_02575 032d2d0280e8780365b3379e631fd98c 247 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 10 236 1.2E-78 T 12-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 R615_02575 032d2d0280e8780365b3379e631fd98c 247 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 8 239 40.368 T 12-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 R615_05795 0b76fb0aa61f809b302b77ee9cc3e4f4 278 Gene3D G3DSA:3.40.190.170 3 262 7.8E-7 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 459 593 1.2E-34 T 12-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 Gene3D G3DSA:2.60.120.10 8 129 3.0E-13 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 SMART SM00116 215 262 0.021 T 12-10-2018 IPR000644 CBS domain R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 SMART SM00116 152 198 0.06 T 12-10-2018 IPR000644 CBS domain R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 SMART SM00100 11 127 3.7E-4 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 Pfam PF00571 CBS domain 151 198 8.9E-4 T 12-10-2018 IPR000644 CBS domain R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 Pfam PF00027 Cyclic nucleotide-binding domain 31 111 1.6E-8 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 Gene3D G3DSA:3.10.580.10 130 274 3.0E-19 T 12-10-2018 R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 SUPERFAMILY SSF51206 9 126 1.17E-15 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 Pfam PF03445 Putative nucleotidyltransferase DUF294 287 418 1.2E-37 T 12-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 R615_11965 a64fc3fb38b602fbaae0c2b647fac697 599 SUPERFAMILY SSF54631 149 261 3.54E-18 T 12-10-2018 R615_05235 239eb9eba15b0257095cabac8e2b8170 459 SUPERFAMILY SSF52540 236 428 5.44E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05235 239eb9eba15b0257095cabac8e2b8170 459 Pfam PF00448 SRP54-type protein, GTPase domain 242 427 6.6E-32 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_05235 239eb9eba15b0257095cabac8e2b8170 459 SMART SM00382 238 408 1.4E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_05235 239eb9eba15b0257095cabac8e2b8170 459 SMART SM00962 239 431 7.2E-39 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 R615_05235 239eb9eba15b0257095cabac8e2b8170 459 Gene3D G3DSA:3.40.50.300 236 419 2.2E-45 T 12-10-2018 R615_05235 239eb9eba15b0257095cabac8e2b8170 459 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 327 1.4E-68 T 12-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 R615_05985 f5f933042f5880999b6ea43c54775739 131 Pfam PF11042 Protein of unknown function (DUF2750) 22 123 2.5E-32 T 12-10-2018 IPR021284 Protein of unknown function DUF2750 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 12-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 Hamap MF_00235 Adenylate kinase [adk]. 1 217 50.974 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 PRINTS PR00094 Adenylate kinase signature 4 17 2.8E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 PRINTS PR00094 Adenylate kinase signature 32 46 2.8E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 PRINTS PR00094 Adenylate kinase signature 156 171 2.8E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 PRINTS PR00094 Adenylate kinase signature 81 97 2.8E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 PRINTS PR00094 Adenylate kinase signature 173 187 2.8E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 187 3.5E-74 T 12-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.5E-16 T 12-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 SUPERFAMILY SSF52540 1 212 6.2E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 Pfam PF00406 Adenylate kinase 5 185 5.8E-56 T 12-10-2018 R615_12715 0acdbaf6b0f42cbf1b6249d01bf97681 217 Gene3D G3DSA:3.40.50.300 1 217 4.7E-76 T 12-10-2018 R615_17425 783e66610dd1fd601956120209a0a7b5 100 SUPERFAMILY SSF47413 46 91 2.03E-8 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_17425 783e66610dd1fd601956120209a0a7b5 100 Gene3D G3DSA:1.10.260.40 26 94 6.5E-9 T 12-10-2018 R615_17425 783e66610dd1fd601956120209a0a7b5 100 SMART SM00530 41 94 0.0042 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_17425 783e66610dd1fd601956120209a0a7b5 100 Pfam PF01381 Helix-turn-helix 47 91 1.0E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_05705 cf602dc46b0c4339369f502694990c9e 126 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 125 4.0E-9 T 12-10-2018 IPR008249 Uncharacterised protein family UPF0231 R615_05705 cf602dc46b0c4339369f502694990c9e 126 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 125 6.0E-35 T 12-10-2018 IPR008249 Uncharacterised protein family UPF0231 R615_04345 2a05888352e119ebcd31d1bb1a706350 161 Gene3D G3DSA:2.40.10.330 72 122 7.6E-57 T 12-10-2018 R615_04345 2a05888352e119ebcd31d1bb1a706350 161 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 136 5.6E-12 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain R615_04345 2a05888352e119ebcd31d1bb1a706350 161 SUPERFAMILY SSF54534 3 141 2.75E-34 T 12-10-2018 R615_04345 2a05888352e119ebcd31d1bb1a706350 161 Gene3D G3DSA:3.10.50.40 3 155 7.6E-57 T 12-10-2018 R615_06095 29ad1f6aa18d1a1c97d463801d27cd73 391 SUPERFAMILY SSF103473 12 383 6.02E-42 T 12-10-2018 IPR036259 MFS transporter superfamily R615_06095 29ad1f6aa18d1a1c97d463801d27cd73 391 Pfam PF12832 MFS_1 like family 11 363 6.3E-76 T 12-10-2018 IPR024989 Major facilitator superfamily associated domain R615_06095 29ad1f6aa18d1a1c97d463801d27cd73 391 PIRSF PIRSF004925 2 391 4.0E-102 T 12-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter R615_06095 29ad1f6aa18d1a1c97d463801d27cd73 391 Gene3D G3DSA:1.20.1250.20 191 391 8.9E-44 T 12-10-2018 R615_06095 29ad1f6aa18d1a1c97d463801d27cd73 391 Gene3D G3DSA:1.20.1250.20 8 190 9.5E-15 T 12-10-2018 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 SUPERFAMILY SSF53850 91 280 9.91E-22 T 12-10-2018 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.5E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 Gene3D G3DSA:3.40.190.10 163 251 1.5E-8 T 12-10-2018 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_05395 2d30e70af88f6ba200a436612acbadb9 282 SUPERFAMILY SSF46785 1 80 1.26E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_05395 2d30e70af88f6ba200a436612acbadb9 282 Gene3D G3DSA:1.10.10.10 1 84 8.5E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_05395 2d30e70af88f6ba200a436612acbadb9 282 Pfam PF03466 LysR substrate binding domain 89 279 4.0E-17 T 12-10-2018 IPR005119 LysR, substrate-binding R615_05395 2d30e70af88f6ba200a436612acbadb9 282 Gene3D G3DSA:3.40.190.10 127 267 1.5E-8 T 12-10-2018 R615_03555 aad591c4ab9fb3ce684402c2fbf820aa 343 Gene3D G3DSA:3.30.70.1290 3 157 1.3E-5 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_07470 52a19bfbfb1a97740fa035787103ddb6 162 SMART SM00226 7 141 2.6E-27 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I R615_07470 52a19bfbfb1a97740fa035787103ddb6 162 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 10 138 5.3E-20 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I R615_07470 52a19bfbfb1a97740fa035787103ddb6 162 Gene3D G3DSA:3.40.50.2300 6 144 3.5E-36 T 12-10-2018 R615_07470 52a19bfbfb1a97740fa035787103ddb6 162 SUPERFAMILY SSF52788 6 138 1.83E-34 T 12-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily R615_12855 388e318dce6400cabec48fe850d56de6 432 SUPERFAMILY SSF48452 305 410 2.81E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 Gene3D G3DSA:1.25.40.10 267 413 9.1E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 Gene3D G3DSA:1.25.40.10 41 160 1.3E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 SUPERFAMILY SSF48452 75 263 2.49E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 Pfam PF13432 Tetratricopeptide repeat 57 117 3.7E-5 T 12-10-2018 R615_12855 388e318dce6400cabec48fe850d56de6 432 SMART SM00028 163 196 0.8 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 SMART SM00028 90 123 1.5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 SMART SM00028 374 407 150.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 SMART SM00028 234 267 300.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 SMART SM00028 338 371 16.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12855 388e318dce6400cabec48fe850d56de6 432 Gene3D G3DSA:1.25.40.10 161 264 1.3E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_04790 6edc1a70c319cf35acccb05195d83979 353 Gene3D G3DSA:1.10.530.10 183 322 2.7E-41 T 12-10-2018 R615_04790 6edc1a70c319cf35acccb05195d83979 353 SMART SM00047 172 336 8.3E-26 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 R615_04790 6edc1a70c319cf35acccb05195d83979 353 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 189 324 3.0E-20 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 R615_04790 6edc1a70c319cf35acccb05195d83979 353 Gene3D G3DSA:2.10.70.40 217 269 2.7E-41 T 12-10-2018 R615_04790 6edc1a70c319cf35acccb05195d83979 353 Pfam PF10135 Rod binding protein 51 100 2.1E-13 T 12-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal R615_04790 6edc1a70c319cf35acccb05195d83979 353 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 13 323 3.2E-78 T 12-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 R615_16570 a5a29fdf7afb11f24c6fd8ecc94669c7 194 Pfam PF00583 Acetyltransferase (GNAT) family 56 141 1.1E-10 T 12-10-2018 IPR000182 GNAT domain R615_16570 a5a29fdf7afb11f24c6fd8ecc94669c7 194 Gene3D G3DSA:3.40.630.30 22 181 7.8E-48 T 12-10-2018 R615_16570 a5a29fdf7afb11f24c6fd8ecc94669c7 194 TIGRFAM TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase 24 178 1.1E-58 T 12-10-2018 IPR012772 L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 KEGG: 00260+2.3.1.178 R615_16570 a5a29fdf7afb11f24c6fd8ecc94669c7 194 SUPERFAMILY SSF55729 22 142 1.13E-17 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_09430 1772f52b3a0db5ab20068b0fa1dd6310 310 Gene3D G3DSA:3.90.70.10 47 200 1.1E-29 T 12-10-2018 R615_09430 1772f52b3a0db5ab20068b0fa1dd6310 310 Pfam PF03412 Peptidase C39 family 57 192 3.5E-16 T 12-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 R615_08120 f5675dab7aec5820800ee910388b4bb5 254 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 2 252 42.259 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 R615_08120 f5675dab7aec5820800ee910388b4bb5 254 Gene3D G3DSA:3.90.550.10 3 252 2.8E-91 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_08120 f5675dab7aec5820800ee910388b4bb5 254 Pfam PF02348 Cytidylyltransferase 6 225 6.8E-56 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 R615_08120 f5675dab7aec5820800ee910388b4bb5 254 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 245 1.4E-91 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 R615_08120 f5675dab7aec5820800ee910388b4bb5 254 SUPERFAMILY SSF53448 4 250 2.93E-58 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 SUPERFAMILY SSF117892 119 255 3.53E-24 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 Pfam PF01145 SPFH domain / Band 7 family 92 263 7.6E-27 T 12-10-2018 IPR001107 Band 7 domain R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 SMART SM00244 88 248 1.6E-32 T 12-10-2018 IPR001107 Band 7 domain R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 PRINTS PR00721 Stomatin signature 95 117 1.6E-8 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 PRINTS PR00721 Stomatin signature 142 163 1.6E-8 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 PRINTS PR00721 Stomatin signature 224 242 1.6E-8 T 12-10-2018 IPR001972 Stomatin family GO:0016020 R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 Gene3D G3DSA:3.30.479.30 116 250 1.1E-20 T 12-10-2018 R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 Pfam PF12221 Bacterial membrane protein N terminal 1 54 3.1E-14 T 12-10-2018 IPR020980 Menbrane protein HflK, N-terminal R615_02505 1391e08c1f2a6c2d8798f73874e6657c 396 TIGRFAM TIGR01933 hflK: HflK protein 90 350 1.6E-104 T 12-10-2018 IPR010201 HflK GO:0016021 R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 Gene3D G3DSA:3.30.420.10 1 194 1.5E-74 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 Pfam PF08411 Exonuclease C-terminal 205 472 2.8E-96 T 12-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 PIRSF PIRSF000977 1 478 1.0E-200 T 12-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 SMART SM00479 3 196 0.0019 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 Gene3D G3DSA:1.20.1280.70 352 413 5.7E-24 T 12-10-2018 R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 Gene3D G3DSA:2.30.30.450 207 346 2.6E-52 T 12-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 Pfam PF00929 Exonuclease 5 186 9.3E-27 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_11235 b86f0708d5f3e0acf891af99365ec3bf 480 SUPERFAMILY SSF53098 4 474 1.66E-127 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_05695 36aea239e74fa6b7c0af964655a07834 159 PIRSF PIRSF006092 1 159 4.9E-9 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 R615_05695 36aea239e74fa6b7c0af964655a07834 159 SUPERFAMILY SSF54534 81 158 4.97E-9 T 12-10-2018 R615_05695 36aea239e74fa6b7c0af964655a07834 159 Gene3D G3DSA:3.10.50.30 79 159 4.6E-8 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 R615_05695 36aea239e74fa6b7c0af964655a07834 159 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 158 2.1E-9 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 R615_13230 eb1845e004818c079a96ee4e83505709 290 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 36 281 3.1E-85 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 R615_13230 eb1845e004818c079a96ee4e83505709 290 Gene3D G3DSA:3.40.50.150 98 287 6.3E-56 T 12-10-2018 R615_13230 eb1845e004818c079a96ee4e83505709 290 Pfam PF05175 Methyltransferase small domain 119 198 2.7E-17 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 R615_13230 eb1845e004818c079a96ee4e83505709 290 SUPERFAMILY SSF53335 17 272 2.67E-54 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_13230 eb1845e004818c079a96ee4e83505709 290 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 15 286 43.226 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 R615_13230 eb1845e004818c079a96ee4e83505709 290 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 191 197 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_13230 eb1845e004818c079a96ee4e83505709 290 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 284 6.3E-74 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 R615_13230 eb1845e004818c079a96ee4e83505709 290 Gene3D G3DSA:1.10.8.10 14 97 4.2E-21 T 12-10-2018 R615_12685 8ef8e53a7b16f99d32bc8395e6a86703 81 Pfam PF04102 SlyX 16 81 4.0E-16 T 12-10-2018 IPR007236 SlyX R615_01390 2b026b066f719295675853429976878f 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 264 2.8E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_01390 2b026b066f719295675853429976878f 274 Gene3D G3DSA:1.10.3720.10 12 270 1.9E-48 T 12-10-2018 IPR035906 MetI-like superfamily R615_01390 2b026b066f719295675853429976878f 274 SUPERFAMILY SSF161098 7 269 9.16E-53 T 12-10-2018 IPR035906 MetI-like superfamily R615_14290 b887b8dab2efcf634e446806b2886eed 268 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 194 211 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site R615_14290 b887b8dab2efcf634e446806b2886eed 268 Pfam PF01618 MotA/TolQ/ExbB proton channel family 113 223 3.0E-19 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_09150 01d32c5acb5692472b41948f74e84634 194 Pfam PF04116 Fatty acid hydroxylase superfamily 26 159 4.6E-22 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 SUPERFAMILY SSF53098 3 154 1.18E-54 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 2.3E-41 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 2.3E-41 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 2.3E-41 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 2.3E-41 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 2.3E-41 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 12-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 154 1.1E-65 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 Gene3D G3DSA:3.30.420.10 2 158 2.4E-53 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.379 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_06940 651bb14f045fa27e26f7d66ea4b3c417 172 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 8.3E-63 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 SUPERFAMILY SSF52540 54 671 8.91E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 Pfam PF00270 DEAD/DEAH box helicase 57 157 1.8E-6 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 32 697 35.249 T 12-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 SMART SM00487 21 316 0.0034 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 Gene3D G3DSA:3.40.50.300 506 694 2.3E-28 T 12-10-2018 R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 SMART SM00491 546 679 4.9E-26 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 Gene3D G3DSA:3.40.50.300 23 305 3.6E-40 T 12-10-2018 R615_08190 e84a6cd90d48742c1e48b852fb45863a 697 Pfam PF13307 Helicase C-terminal domain 537 692 7.6E-30 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 R615_02350 09c9ea341c68bbf3b1ca2512a863d377 185 Pfam PF03942 DTW domain 4 180 1.4E-33 T 12-10-2018 IPR005636 DTW R615_02350 09c9ea341c68bbf3b1ca2512a863d377 185 SMART SM01144 2 185 6.7E-42 T 12-10-2018 IPR005636 DTW R615_08485 df093efe874314e5dbb1c21ea65cf036 164 Gene3D G3DSA:3.30.750.24 5 113 1.2E-11 T 12-10-2018 IPR036513 STAS domain superfamily R615_08485 df093efe874314e5dbb1c21ea65cf036 164 SUPERFAMILY SSF52091 6 106 7.06E-13 T 12-10-2018 IPR036513 STAS domain superfamily R615_08485 df093efe874314e5dbb1c21ea65cf036 164 PIRSF PIRSF029548 1 160 1.3E-45 T 12-10-2018 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type R615_05740 838f62787818f244323df5412cfabc64 117 Gene3D G3DSA:1.10.260.40 61 117 3.8E-14 T 12-10-2018 R615_05740 838f62787818f244323df5412cfabc64 117 Pfam PF01381 Helix-turn-helix 63 114 7.8E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_05740 838f62787818f244323df5412cfabc64 117 SUPERFAMILY SSF47413 62 115 1.25E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_05740 838f62787818f244323df5412cfabc64 117 SMART SM00530 60 115 2.6E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_10525 24add013ae2237a1ed3d1165363f5111 334 Hamap MF_00469 UPF0176 protein YceA [yceA]. 5 257 46.161 T 12-10-2018 IPR020936 Uncharacterised protein family UPF0176 R615_10525 24add013ae2237a1ed3d1165363f5111 334 SUPERFAMILY SSF52821 97 244 1.65E-31 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_10525 24add013ae2237a1ed3d1165363f5111 334 Gene3D G3DSA:3.30.70.100 1 99 9.3E-34 T 12-10-2018 R615_10525 24add013ae2237a1ed3d1165363f5111 334 Gene3D G3DSA:3.40.250.10 100 254 2.0E-51 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_10525 24add013ae2237a1ed3d1165363f5111 334 SMART SM00450 116 217 1.8E-20 T 12-10-2018 IPR001763 Rhodanese-like domain R615_10525 24add013ae2237a1ed3d1165363f5111 334 Pfam PF00581 Rhodanese-like domain 118 213 6.0E-8 T 12-10-2018 IPR001763 Rhodanese-like domain R615_07515 471eb3e9c8114226a53d9fee442ee2dd 124 SUPERFAMILY SSF47413 10 68 4.79E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_07515 471eb3e9c8114226a53d9fee442ee2dd 124 Pfam PF13560 Helix-turn-helix domain 14 71 3.5E-14 T 12-10-2018 R615_07515 471eb3e9c8114226a53d9fee442ee2dd 124 Gene3D G3DSA:1.10.260.40 5 80 4.8E-24 T 12-10-2018 R615_07515 471eb3e9c8114226a53d9fee442ee2dd 124 SMART SM00530 18 73 4.9E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_00955 70dd6d7e018212ec40724e663af9df00 52 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 4 52 1.2E-24 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00955 70dd6d7e018212ec40724e663af9df00 52 Pfam PF00471 Ribosomal protein L33 5 50 4.0E-17 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00955 70dd6d7e018212ec40724e663af9df00 52 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 50 14.722 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_00955 70dd6d7e018212ec40724e663af9df00 52 ProSitePatterns PS00582 Ribosomal protein L33 signature. 18 37 - T 12-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_00955 70dd6d7e018212ec40724e663af9df00 52 SUPERFAMILY SSF57829 3 50 5.07E-18 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 R615_00955 70dd6d7e018212ec40724e663af9df00 52 Gene3D G3DSA:2.20.28.120 1 52 2.3E-28 T 12-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PIRSF PIRSF001400 1 429 1.7E-192 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 Gene3D G3DSA:3.30.390.10 1 127 6.1E-55 T 12-10-2018 IPR029017 Enolase-like, N-terminal R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 Gene3D G3DSA:3.20.20.120 128 430 5.9E-136 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PRINTS PR00148 Enolase signature 107 123 3.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PRINTS PR00148 Enolase signature 367 384 3.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PRINTS PR00148 Enolase signature 165 178 3.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PRINTS PR00148 Enolase signature 315 326 3.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PRINTS PR00148 Enolase signature 338 352 3.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 PRINTS PR00148 Enolase signature 37 51 3.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 SUPERFAMILY SSF51604 143 426 5.99E-128 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 428 5.9E-138 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 SMART SM01192 143 429 1.9E-219 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 Hamap MF_00318 Enolase [eno]. 2 415 44.272 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 SMART SM01193 4 134 7.9E-91 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 Pfam PF03952 Enolase, N-terminal domain 4 134 5.5E-58 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 ProSitePatterns PS00164 Enolase signature. 338 351 - T 12-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 5.9E-205 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 R615_02230 4809896f400a4f2858a2b7a0eb218bda 430 SUPERFAMILY SSF54826 3 138 2.29E-56 T 12-10-2018 R615_00890 4a1b789ab23342628d176efa7a04b3b0 267 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 35 245 1.1E-32 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 R615_00890 4a1b789ab23342628d176efa7a04b3b0 267 SUPERFAMILY SSF53213 8 245 4.58E-78 T 12-10-2018 R615_00890 4a1b789ab23342628d176efa7a04b3b0 267 Gene3D G3DSA:3.40.830.10 2 253 4.2E-83 T 12-10-2018 R615_00890 4a1b789ab23342628d176efa7a04b3b0 267 PIRSF PIRSF006157 2 264 5.8E-85 T 12-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 R615_07095 5c4c5fa1421eeb63d2d03cf89209dd35 202 Gene3D G3DSA:3.20.20.70 6 202 6.1E-69 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_07095 5c4c5fa1421eeb63d2d03cf89209dd35 202 Pfam PF01081 KDPG and KHG aldolase 8 197 9.8E-69 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 R615_07095 5c4c5fa1421eeb63d2d03cf89209dd35 202 SUPERFAMILY SSF51569 8 199 1.19E-62 T 12-10-2018 R615_07095 5c4c5fa1421eeb63d2d03cf89209dd35 202 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 35 44 - T 12-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 R615_07095 5c4c5fa1421eeb63d2d03cf89209dd35 202 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 8 199 3.3E-72 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 R615_13565 7656cd4a99ed7394233738889f2d20eb 301 Pfam PF00892 EamA-like transporter family 8 141 9.0E-25 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_13565 7656cd4a99ed7394233738889f2d20eb 301 Pfam PF00892 EamA-like transporter family 153 286 5.7E-23 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_13565 7656cd4a99ed7394233738889f2d20eb 301 SUPERFAMILY SSF103481 41 144 6.54E-16 T 12-10-2018 R615_13565 7656cd4a99ed7394233738889f2d20eb 301 SUPERFAMILY SSF103481 186 287 1.57E-10 T 12-10-2018 R615_07785 1aed00373f671369f1d38fbf374f8c69 572 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 325 440 1.4E-9 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal R615_07785 1aed00373f671369f1d38fbf374f8c69 572 SUPERFAMILY SSF53901 288 486 1.55E-28 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_07785 1aed00373f671369f1d38fbf374f8c69 572 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 120 315 3.4E-14 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal R615_07785 1aed00373f671369f1d38fbf374f8c69 572 SUPERFAMILY SSF53901 6 324 9.47E-28 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_07785 1aed00373f671369f1d38fbf374f8c69 572 Gene3D G3DSA:3.40.47.10 1 559 1.1E-80 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_07785 1aed00373f671369f1d38fbf374f8c69 572 SMART SM00825 Beta-ketoacyl synthase 8 487 0.002 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain R615_01070 8b69671b9dd93ad996e6118e6132fbc2 550 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 4 448 5.4E-172 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 R615_01070 8b69671b9dd93ad996e6118e6132fbc2 550 SUPERFAMILY SSF56112 93 439 8.64E-43 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_01070 8b69671b9dd93ad996e6118e6132fbc2 550 Pfam PF03109 ABC1 family 111 234 2.9E-33 T 12-10-2018 IPR004147 UbiB domain R615_01070 8b69671b9dd93ad996e6118e6132fbc2 550 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 549 51.707 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 R615_09405 afa3de616570f4e3309070e5eec38390 273 Pfam PF03618 Kinase/pyrophosphorylase 6 262 4.7E-78 T 12-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 R615_09405 afa3de616570f4e3309070e5eec38390 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 271 73.568 T 12-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein R615_07520 1e4ece4d96e0e34f432b51e53c1a345f 439 Pfam PF13657 HipA N-terminal domain 6 116 6.8E-22 T 12-10-2018 IPR017508 HipA, N-terminal subdomain 1 R615_07520 1e4ece4d96e0e34f432b51e53c1a345f 439 Pfam PF07804 HipA-like C-terminal domain 175 414 1.1E-48 T 12-10-2018 IPR012893 HipA-like, C-terminal R615_17040 4bb8fefc72528beee8be45624b14f955 178 Gene3D G3DSA:1.20.1550.10 18 178 1.6E-48 T 12-10-2018 IPR023380 DsbB-like superfamily R615_17040 4bb8fefc72528beee8be45624b14f955 178 SUPERFAMILY SSF158442 22 170 5.89E-40 T 12-10-2018 IPR023380 DsbB-like superfamily R615_17040 4bb8fefc72528beee8be45624b14f955 178 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 14 177 20.745 T 12-10-2018 IPR022920 Disulphide bond formation protein DsbB R615_17040 4bb8fefc72528beee8be45624b14f955 178 Pfam PF02600 Disulfide bond formation protein DsbB 22 169 3.8E-40 T 12-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PIRSF PIRSF000345 3 331 3.2E-97 T 12-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 Pfam PF00487 Fatty acid desaturase 44 260 2.0E-17 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PRINTS PR00075 Fatty acid desaturase family 1 signature 191 212 7.7E-30 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PRINTS PR00075 Fatty acid desaturase family 1 signature 41 63 7.7E-30 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PRINTS PR00075 Fatty acid desaturase family 1 signature 160 178 7.7E-30 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PRINTS PR00075 Fatty acid desaturase family 1 signature 102 131 7.7E-30 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PRINTS PR00075 Fatty acid desaturase family 1 signature 64 84 7.7E-30 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_07300 f96ffbbd58d64efe7d99bce30ae7ed08 379 PRINTS PR00075 Fatty acid desaturase family 1 signature 234 248 7.7E-30 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_06040 54bff1692d78a202eee0ace96fb10ea3 200 Pfam PF03358 NADPH-dependent FMN reductase 13 131 4.8E-9 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 R615_06040 54bff1692d78a202eee0ace96fb10ea3 200 Gene3D G3DSA:3.40.50.360 1 198 4.7E-66 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_06040 54bff1692d78a202eee0ace96fb10ea3 200 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 6 196 1.1E-46 T 12-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 R615_06040 54bff1692d78a202eee0ace96fb10ea3 200 SUPERFAMILY SSF52218 5 196 2.41E-61 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_00140 1b5f308a13721dd188791d5226fbcad8 268 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 10 254 38.795 T 12-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 R615_00140 1b5f308a13721dd188791d5226fbcad8 268 SUPERFAMILY SSF56300 10 263 2.78E-54 T 12-10-2018 R615_00140 1b5f308a13721dd188791d5226fbcad8 268 Gene3D G3DSA:3.60.21.10 3 265 2.7E-69 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_00140 1b5f308a13721dd188791d5226fbcad8 268 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 199 254 5.0E-15 T 12-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 R615_00140 1b5f308a13721dd188791d5226fbcad8 268 Pfam PF00149 Calcineurin-like phosphoesterase 10 199 2.7E-12 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_06775 dbb43150fcf58ebc7b885b5ea93b8a77 258 Pfam PF13007 Transposase C of IS166 homeodomain 58 130 1.3E-9 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain R615_03960 ca02be2d58b535cb8ede3dad0cb87a25 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.3E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_03960 ca02be2d58b535cb8ede3dad0cb87a25 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.3E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_03960 ca02be2d58b535cb8ede3dad0cb87a25 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.1E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_03960 ca02be2d58b535cb8ede3dad0cb87a25 203 Gene3D G3DSA:1.10.357.10 3 202 7.6E-46 T 12-10-2018 R615_03960 ca02be2d58b535cb8ede3dad0cb87a25 203 SUPERFAMILY SSF46689 8 90 9.48E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_03960 ca02be2d58b535cb8ede3dad0cb87a25 203 SUPERFAMILY SSF48498 87 197 9.34E-7 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_15655 30ff509754785a709abbc72b33b07807 148 Gene3D G3DSA:3.40.5.10 1 50 2.4E-24 T 12-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15655 30ff509754785a709abbc72b33b07807 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 147 5.3E-26 T 12-10-2018 IPR020069 Ribosomal protein L9, C-terminal R615_15655 30ff509754785a709abbc72b33b07807 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 26.174 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15655 30ff509754785a709abbc72b33b07807 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 1.4E-22 T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15655 30ff509754785a709abbc72b33b07807 148 SUPERFAMILY SSF55658 1 57 4.53E-19 T 12-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal R615_15655 30ff509754785a709abbc72b33b07807 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_15655 30ff509754785a709abbc72b33b07807 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 1.2E-53 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_15655 30ff509754785a709abbc72b33b07807 148 SUPERFAMILY SSF55653 61 148 4.58E-25 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily R615_15655 30ff509754785a709abbc72b33b07807 148 Gene3D G3DSA:3.10.430.100 61 148 2.5E-27 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily R615_05980 5aea2412c0a2fd3d569614b1325e6892 392 Pfam PF04245 37-kD nucleoid-associated bacterial protein 26 378 2.8E-38 T 12-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 R615_06505 674c0a30512e6c37cb14d7f3de506fc1 237 SUPERFAMILY SSF52540 33 189 1.22E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_06505 674c0a30512e6c37cb14d7f3de506fc1 237 Gene3D G3DSA:3.40.50.300 7 228 1.8E-35 T 12-10-2018 R615_06505 674c0a30512e6c37cb14d7f3de506fc1 237 Pfam PF06414 Zeta toxin 28 211 1.1E-40 T 12-10-2018 IPR010488 Zeta toxin domain GO:0005524|GO:0016301 R615_11360 99cb948eb4b240327151494eb2d8c012 1084 SMART SM00736 321 411 0.0045 T 12-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 R615_11360 99cb948eb4b240327151494eb2d8c012 1084 SMART SM00736 412 501 0.017 T 12-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 R615_11360 99cb948eb4b240327151494eb2d8c012 1084 Gene3D G3DSA:2.60.40.10 408 495 4.2E-9 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11360 99cb948eb4b240327151494eb2d8c012 1084 Gene3D G3DSA:2.60.40.10 318 406 2.0E-11 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11360 99cb948eb4b240327151494eb2d8c012 1084 SUPERFAMILY SSF49313 320 409 1.02E-5 T 12-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 SUPERFAMILY SSF50985 530 774 1.74E-70 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Gene3D G3DSA:2.130.10.30 779 922 7.4E-32 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Gene3D G3DSA:2.130.10.30 146 305 2.6E-23 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 SUPERFAMILY SSF50985 777 920 6.02E-31 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 SUPERFAMILY SSF50985 139 375 1.31E-31 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 648 694 7.8E-11 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 500 516 1.8E-16 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 481 494 1.8E-16 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 584 600 1.8E-16 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 687 705 1.8E-16 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 449 465 1.8E-16 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 743 764 1.8E-16 T 12-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 SUPERFAMILY SSF50985 316 563 3.66E-71 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Gene3D G3DSA:2.130.10.30 631 777 2.6E-44 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Gene3D G3DSA:2.130.10.30 306 478 2.2E-56 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 882 906 3.1E-8 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 268 295 9.1E-9 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 837 860 2.2E-7 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 481 508 3.2E-5 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 532 560 1.1E-9 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 332 360 7.1E-13 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 731 759 3.2E-10 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 582 610 2.4E-11 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 432 460 1.0E-11 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 381 410 4.2E-10 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 219 245 4.0E-8 T 12-10-2018 R615_02255 3d0540a3fba9feac04c65a7610b5bdd6 922 Gene3D G3DSA:2.130.10.30 479 630 8.4E-39 T 12-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II R615_10810 f08a26ce6df00a29ca5aa7c13db0266e 186 Pfam PF03843 Outer membrane lipoprotein Slp family 18 170 7.9E-40 T 12-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 R615_10810 f08a26ce6df00a29ca5aa7c13db0266e 186 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 4 147 1.4E-27 T 12-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 R615_10810 f08a26ce6df00a29ca5aa7c13db0266e 186 PIRSF PIRSF004982 3 185 4.9E-42 T 12-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 R615_00555 2d8f5a763068b551b6eeb0aef1f364cd 479 Pfam PF02666 Phosphatidylserine decarboxylase 227 466 1.3E-20 T 12-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 R615_11045 62a7421720c3ed74c386ad635b3a5a48 209 Gene3D G3DSA:3.40.50.1820 13 208 4.3E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11045 62a7421720c3ed74c386ad635b3a5a48 209 SUPERFAMILY SSF53474 25 200 8.92E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11045 62a7421720c3ed74c386ad635b3a5a48 209 Pfam PF00561 alpha/beta hydrolase fold 50 151 6.5E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_03080 12cf5cb8d8ec5d181848d1473521fb59 144 SMART SM00116 81 128 12.0 T 12-10-2018 IPR000644 CBS domain R615_03080 12cf5cb8d8ec5d181848d1473521fb59 144 SMART SM00116 14 61 0.0028 T 12-10-2018 IPR000644 CBS domain R615_03080 12cf5cb8d8ec5d181848d1473521fb59 144 Gene3D G3DSA:3.10.580.10 2 129 2.6E-21 T 12-10-2018 R615_03080 12cf5cb8d8ec5d181848d1473521fb59 144 Pfam PF00571 CBS domain 7 56 2.7E-10 T 12-10-2018 IPR000644 CBS domain R615_03080 12cf5cb8d8ec5d181848d1473521fb59 144 Pfam PF00571 CBS domain 74 125 0.0021 T 12-10-2018 IPR000644 CBS domain R615_03080 12cf5cb8d8ec5d181848d1473521fb59 144 SUPERFAMILY SSF54631 4 133 5.31E-21 T 12-10-2018 R615_13930 b532dc390443c4236fe070c0593f6cdc 179 SUPERFAMILY SSF55846 4 178 9.42E-64 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 R615_13930 b532dc390443c4236fe070c0593f6cdc 179 Gene3D G3DSA:3.40.80.10 2 179 2.9E-54 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 R615_13930 b532dc390443c4236fe070c0593f6cdc 179 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 27 167 6.6E-27 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 R615_13930 b532dc390443c4236fe070c0593f6cdc 179 SMART SM00644 16 166 1.1E-46 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 PIRSF PIRSF000349 1 193 3.3E-84 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 SUPERFAMILY SSF54719 84 192 4.32E-42 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 Gene3D G3DSA:2.40.500.20 83 193 2.0E-41 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 1.1E-36 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 4.7E-21 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.7E-21 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.7E-21 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.7E-21 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.7E-21 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 Gene3D G3DSA:1.10.287.990 20 82 2.6E-25 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 6.8E-34 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_14345 7090d6c0240c1fa72b2c5271b87b51b0 193 SUPERFAMILY SSF46609 1 84 7.86E-35 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 R615_13510 35e17c2986f0480b9f257383b511e620 339 Gene3D G3DSA:2.60.120.10 114 249 1.0E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_13510 35e17c2986f0480b9f257383b511e620 339 SUPERFAMILY SSF51206 131 248 4.19E-24 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_13510 35e17c2986f0480b9f257383b511e620 339 SUPERFAMILY SSF51206 7 110 7.33E-10 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like R615_13510 35e17c2986f0480b9f257383b511e620 339 SUPERFAMILY SSF52821 236 336 2.62E-16 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_13510 35e17c2986f0480b9f257383b511e620 339 Gene3D G3DSA:3.40.250.10 252 336 1.1E-14 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_13510 35e17c2986f0480b9f257383b511e620 339 Gene3D G3DSA:2.60.120.10 3 113 1.0E-6 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_13510 35e17c2986f0480b9f257383b511e620 339 SMART SM00100 144 260 7.2E-15 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_13510 35e17c2986f0480b9f257383b511e620 339 Pfam PF00027 Cyclic nucleotide-binding domain 164 248 2.2E-16 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain R615_13635 4e2bd77026c9c7a3172456227268187e 286 Gene3D G3DSA:3.20.20.70 45 193 2.6E-10 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_13635 4e2bd77026c9c7a3172456227268187e 286 Pfam PF03537 Glycoside-hydrolase family GH114 55 279 6.5E-88 T 12-10-2018 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain R615_13635 4e2bd77026c9c7a3172456227268187e 286 SUPERFAMILY SSF51445 52 280 7.58E-53 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PIRSF PIRSF000724 1 387 6.4E-134 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 39.377 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 Gene3D G3DSA:3.40.50.1260 165 373 2.2E-153 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 SUPERFAMILY SSF53748 4 383 8.24E-146 T 12-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 Gene3D G3DSA:3.40.50.1260 10 379 2.2E-153 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 12-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.3E-83 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_15400 1bc710e78c28938e6bbf356fd9f54d3e 387 Pfam PF00162 Phosphoglycerate kinase 7 373 9.6E-143 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 R615_10510 e192a89ffa30469bd63cf8216fd5f31e 231 PIRSF PIRSF006091 1 212 1.7E-68 T 12-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 R615_10510 e192a89ffa30469bd63cf8216fd5f31e 231 SMART SM00900 108 200 8.2E-35 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 R615_10510 e192a89ffa30469bd63cf8216fd5f31e 231 Pfam PF04205 FMN-binding domain 108 197 3.2E-20 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 R615_10510 e192a89ffa30469bd63cf8216fd5f31e 231 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 5 202 24.215 T 12-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 R615_10510 e192a89ffa30469bd63cf8216fd5f31e 231 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 13 201 3.1E-54 T 12-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 R615_14795 27ce1314354723d814b093e092b2cbfd 153 Pfam PF01029 NusB family 16 140 6.8E-35 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 R615_14795 27ce1314354723d814b093e092b2cbfd 153 Gene3D G3DSA:1.10.940.10 9 147 4.6E-50 T 12-10-2018 IPR035926 NusB-like superfamily R615_14795 27ce1314354723d814b093e092b2cbfd 153 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 15 141 1.2E-45 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 R615_14795 27ce1314354723d814b093e092b2cbfd 153 SUPERFAMILY SSF48013 13 142 4.32E-44 T 12-10-2018 IPR035926 NusB-like superfamily R615_14795 27ce1314354723d814b093e092b2cbfd 153 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 13 144 22.811 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 R615_10280 2a59329910e8871c4c5dbfca3ddf0a22 94 Gene3D G3DSA:3.30.2310.20 1 94 9.8E-23 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_10280 2a59329910e8871c4c5dbfca3ddf0a22 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 92 6.0E-17 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family R615_10280 2a59329910e8871c4c5dbfca3ddf0a22 94 PIRSF PIRSF029218 1 94 7.3E-29 T 12-10-2018 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 Gene3D G3DSA:1.10.10.10 818 887 8.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 Gene3D G3DSA:3.40.50.300 59 202 2.9E-8 T 12-10-2018 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 Pfam PF13401 AAA domain 69 202 1.6E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 SUPERFAMILY SSF48452 474 708 5.48E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 841 857 2.1E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 857 869 2.1E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 827 841 2.1E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 SUPERFAMILY SSF52540 62 209 2.64E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 Gene3D G3DSA:1.25.40.10 471 814 8.4E-32 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 SMART SM00421 824 881 7.4E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 SUPERFAMILY SSF46894 819 884 1.8E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 R615_13990 bb28b2ff023d0ed9b9234aebfa43f6ae 887 Pfam PF00196 Bacterial regulatory proteins, luxR family 826 881 2.6E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 PRINTS PR01438 Universal stress protein signature 4 22 4.5E-9 T 12-10-2018 IPR006015 Universal stress protein A R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 PRINTS PR01438 Universal stress protein signature 258 270 4.5E-9 T 12-10-2018 IPR006015 Universal stress protein A R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 PRINTS PR01438 Universal stress protein signature 276 298 4.5E-9 T 12-10-2018 IPR006015 Universal stress protein A R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 Pfam PF00582 Universal stress protein family 5 145 2.1E-14 T 12-10-2018 IPR006016 UspA R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 Pfam PF00582 Universal stress protein family 174 298 2.2E-18 T 12-10-2018 IPR006016 UspA R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 Gene3D G3DSA:3.40.50.12370 2 306 2.4E-88 T 12-10-2018 R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 SUPERFAMILY SSF52402 5 146 1.42E-21 T 12-10-2018 R615_09890 03ff13695de3fd6b2f28b03f7e7ca2a5 308 SUPERFAMILY SSF52402 153 300 3.68E-25 T 12-10-2018 R615_14415 6fd5f64464b9d428910575075965ee66 296 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 43 70 - T 12-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 R615_14415 6fd5f64464b9d428910575075965ee66 296 SUPERFAMILY SSF53335 8 267 7.21E-83 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_14415 6fd5f64464b9d428910575075965ee66 296 Gene3D G3DSA:3.40.50.150 4 200 1.4E-70 T 12-10-2018 R615_14415 6fd5f64464b9d428910575075965ee66 296 Gene3D G3DSA:1.10.8.100 202 267 5.6E-24 T 12-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 R615_14415 6fd5f64464b9d428910575075965ee66 296 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 263 2.7E-68 T 12-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm R615_14415 6fd5f64464b9d428910575075965ee66 296 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 11 266 58.105 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 R615_14415 6fd5f64464b9d428910575075965ee66 296 SMART SM00650 27 199 1.9E-90 T 12-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 R615_14415 6fd5f64464b9d428910575075965ee66 296 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 1.0E-84 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 R615_11280 41278ee87fe54eeee106161a4a8e072f 173 Gene3D G3DSA:3.40.1280.10 12 151 2.9E-17 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal R615_11280 41278ee87fe54eeee106161a4a8e072f 173 Pfam PF00588 SpoU rRNA Methylase family 11 144 7.0E-19 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 R615_11280 41278ee87fe54eeee106161a4a8e072f 173 SUPERFAMILY SSF75217 10 152 3.4E-26 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases R615_00785 a78f4261d3be95d4c39189adc2062bd3 268 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 11 222 2.2E-36 T 12-10-2018 R615_17035 cfc0640846aaf4c39eec933f1a5a73aa 147 Pfam PF03748 Flagellar basal body-associated protein FliL 45 146 8.5E-22 T 12-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 R615_17445 217d99b9aa9900797f890d1563efb647 182 SUPERFAMILY SSF48498 76 176 8.45E-11 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_17445 217d99b9aa9900797f890d1563efb647 182 Gene3D G3DSA:1.10.357.10 1 179 5.0E-29 T 12-10-2018 R615_17445 217d99b9aa9900797f890d1563efb647 182 SUPERFAMILY SSF46689 3 80 9.75E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_17445 217d99b9aa9900797f890d1563efb647 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 54 1.0E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_06720 78becaaf375538ec9a234386df13674f 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 2.6E-25 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 R615_06720 78becaaf375538ec9a234386df13674f 64 SUPERFAMILY SSF143034 2 62 2.09E-21 T 12-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06720 78becaaf375538ec9a234386df13674f 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 5.2E-21 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 R615_06720 78becaaf375538ec9a234386df13674f 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 5.2E-21 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 R615_06720 78becaaf375538ec9a234386df13674f 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 5.2E-21 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 R615_06720 78becaaf375538ec9a234386df13674f 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.128 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 R615_06720 78becaaf375538ec9a234386df13674f 64 Pfam PF01632 Ribosomal protein L35 2 61 9.2E-24 T 12-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_06720 78becaaf375538ec9a234386df13674f 64 Gene3D G3DSA:2.40.50.530 4 63 7.1E-20 T 12-10-2018 R615_06720 78becaaf375538ec9a234386df13674f 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 12-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_01325 5a98ddffd5b206f34fae7664a0ac483b 382 Pfam PF05159 Capsule polysaccharide biosynthesis protein 177 323 4.2E-21 T 12-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 SUPERFAMILY SSF48557 4 447 7.23E-105 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 2.5E-18 T 12-10-2018 IPR000362 Fumarate lyase family R615_08140 4b827c64995384b8a1b8a3684c80b088 455 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 2.5E-18 T 12-10-2018 IPR000362 Fumarate lyase family R615_08140 4b827c64995384b8a1b8a3684c80b088 455 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 2.5E-18 T 12-10-2018 IPR000362 Fumarate lyase family R615_08140 4b827c64995384b8a1b8a3684c80b088 455 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.5E-18 T 12-10-2018 IPR000362 Fumarate lyase family R615_08140 4b827c64995384b8a1b8a3684c80b088 455 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 453 7.8E-132 T 12-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 Gene3D G3DSA:1.10.40.30 382 445 1.5E-153 T 12-10-2018 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 2.4E-50 T 12-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 Gene3D G3DSA:1.10.275.10 1 117 9.8E-50 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal R615_08140 4b827c64995384b8a1b8a3684c80b088 455 Gene3D G3DSA:1.20.200.10 118 446 1.5E-153 T 12-10-2018 R615_08140 4b827c64995384b8a1b8a3684c80b088 455 Pfam PF00206 Lyase 14 312 1.2E-64 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal R615_16710 1130e69d06a46ef98a4368d35feb3b5a 81 Pfam PF04380 Membrane fusogenic activity 5 75 1.6E-18 T 12-10-2018 IPR007475 Membrane fusogenic activity R615_07715 2a08c56af059d366e2381867d51dc05c 166 Pfam PF05751 FixH 10 151 1.2E-29 T 12-10-2018 IPR008620 Nitrogen fixation protein FixH R615_11435 11726f6a8d78f10456d98918e63f7028 408 Pfam PF00909 Ammonium Transporter Family 24 401 5.2E-86 T 12-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 R615_11435 11726f6a8d78f10456d98918e63f7028 408 SUPERFAMILY SSF111352 17 386 1.18E-92 T 12-10-2018 R615_11435 11726f6a8d78f10456d98918e63f7028 408 ProSitePatterns PS01219 Ammonium transporters signature. 168 193 - T 12-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 R615_11435 11726f6a8d78f10456d98918e63f7028 408 Gene3D G3DSA:1.10.3430.10 2 407 1.9E-98 T 12-10-2018 IPR029020 Ammonium/urea transporter R615_14725 bd78df9043b4b2d49324ae96d380fe97 223 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 17 208 2.7E-49 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 R615_14725 bd78df9043b4b2d49324ae96d380fe97 223 Gene3D G3DSA:3.90.850.10 3 219 8.0E-69 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 R615_14725 bd78df9043b4b2d49324ae96d380fe97 223 SUPERFAMILY SSF56529 9 215 1.7E-65 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 R615_07780 e7d81bbc39fa8798a8585a960c389bff 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07780 e7d81bbc39fa8798a8585a960c389bff 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07780 e7d81bbc39fa8798a8585a960c389bff 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 1.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_07780 e7d81bbc39fa8798a8585a960c389bff 235 Gene3D G3DSA:3.40.50.720 1 235 3.2E-45 T 12-10-2018 R615_07780 e7d81bbc39fa8798a8585a960c389bff 235 SUPERFAMILY SSF51735 3 235 1.95E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_07780 e7d81bbc39fa8798a8585a960c389bff 235 Pfam PF00106 short chain dehydrogenase 3 191 4.1E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_01045 31eab16421e6146f5b2c5af0e51bbda4 115 Pfam PF02416 mttA/Hcf106 family 4 51 1.2E-6 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 R615_01045 31eab16421e6146f5b2c5af0e51bbda4 115 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 114 14.941 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 R615_01045 31eab16421e6146f5b2c5af0e51bbda4 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 7.3E-20 T 12-10-2018 R615_01045 31eab16421e6146f5b2c5af0e51bbda4 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 7.3E-20 T 12-10-2018 R615_01045 31eab16421e6146f5b2c5af0e51bbda4 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 7.3E-20 T 12-10-2018 R615_01045 31eab16421e6146f5b2c5af0e51bbda4 115 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 65 9.0E-23 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 R615_01805 df6e301f20e41179fb338c1329be156a 97 Pfam PF05488 PAAR motif 19 87 2.6E-23 T 12-10-2018 IPR008727 PAAR motif R615_01805 df6e301f20e41179fb338c1329be156a 97 Gene3D G3DSA:2.60.200.60 1 54 3.5E-8 T 12-10-2018 R615_01805 df6e301f20e41179fb338c1329be156a 97 Gene3D G3DSA:2.60.200.60 55 96 1.1E-10 T 12-10-2018 R615_08300 4da971314c906566ddee81748232d871 202 Pfam PF01612 3'-5' exonuclease 29 187 1.3E-17 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 R615_08300 4da971314c906566ddee81748232d871 202 SUPERFAMILY SSF53098 8 190 2.66E-29 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_08300 4da971314c906566ddee81748232d871 202 Gene3D G3DSA:3.30.420.10 17 200 8.4E-33 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_08300 4da971314c906566ddee81748232d871 202 SMART SM00474 27 199 3.4E-7 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 R615_05680 416b352ffae78a09baa98bf770019927 135 SUPERFAMILY SSF47188 10 127 3.01E-22 T 12-10-2018 IPR035938 Hemerythrin-like superfamily R615_05680 416b352ffae78a09baa98bf770019927 135 Gene3D G3DSA:1.20.120.50 7 129 3.4E-18 T 12-10-2018 IPR035938 Hemerythrin-like superfamily R615_05680 416b352ffae78a09baa98bf770019927 135 ProSitePatterns PS00550 Hemerythrin family signature. 54 77 - T 12-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 R615_05680 416b352ffae78a09baa98bf770019927 135 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 13 127 4.8E-19 T 12-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 R615_11530 4b6eb7bdd0f50bf1a82ef337eb6ee7f3 421 SMART SM00771 275 405 1.1E-24 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 R615_11530 4b6eb7bdd0f50bf1a82ef337eb6ee7f3 421 SUPERFAMILY SSF64383 275 411 4.71E-35 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 R615_11530 4b6eb7bdd0f50bf1a82ef337eb6ee7f3 421 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 278 405 9.0E-25 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 R615_11530 4b6eb7bdd0f50bf1a82ef337eb6ee7f3 421 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 407 17.884 T 12-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 R615_11530 4b6eb7bdd0f50bf1a82ef337eb6ee7f3 421 Gene3D G3DSA:3.30.1400.10 274 413 7.0E-42 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 R615_11530 4b6eb7bdd0f50bf1a82ef337eb6ee7f3 421 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 278 404 2.7E-37 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 R615_12695 e3af53d89c3d41b3cf2e47583872a800 259 SUPERFAMILY SSF53335 8 252 4.01E-63 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_12695 e3af53d89c3d41b3cf2e47583872a800 259 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 2 253 35.915 T 12-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 R615_12695 e3af53d89c3d41b3cf2e47583872a800 259 Gene3D G3DSA:3.40.50.150 60 256 1.9E-70 T 12-10-2018 R615_12695 e3af53d89c3d41b3cf2e47583872a800 259 Pfam PF04445 Putative SAM-dependent methyltransferase 33 251 8.8E-83 T 12-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 R615_02795 355738c5476628e096e188a88168b826 312 Gene3D G3DSA:3.30.1490.300 75 133 5.9E-8 T 12-10-2018 R615_02795 355738c5476628e096e188a88168b826 312 Gene3D G3DSA:3.30.420.40 169 207 5.9E-8 T 12-10-2018 R615_02795 355738c5476628e096e188a88168b826 312 SUPERFAMILY SSF53067 51 161 2.59E-6 T 12-10-2018 R615_02795 355738c5476628e096e188a88168b826 312 Gene3D G3DSA:3.30.420.40 34 168 5.9E-8 T 12-10-2018 R615_01090 7ce50ce24dc29c753834ce8d2d6b1287 286 Pfam PF08668 HDOD domain 29 217 4.5E-29 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_01090 7ce50ce24dc29c753834ce8d2d6b1287 286 SUPERFAMILY SSF109604 16 246 3.45E-36 T 12-10-2018 R615_01090 7ce50ce24dc29c753834ce8d2d6b1287 286 Gene3D G3DSA:1.10.3210.10 3 284 1.0E-39 T 12-10-2018 R615_07085 76cc7342659748259a33f7b3e84ae606 233 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 6 215 1.9E-51 T 12-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 R615_07085 76cc7342659748259a33f7b3e84ae606 233 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 8 219 1.9E-50 T 12-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 R615_07085 76cc7342659748259a33f7b3e84ae606 233 SUPERFAMILY SSF100950 4 226 2.03E-51 T 12-10-2018 IPR037171 NagB/RpiA transferase-like R615_07085 76cc7342659748259a33f7b3e84ae606 233 Gene3D G3DSA:3.40.50.1360 2 233 4.2E-61 T 12-10-2018 R615_16475 44c70e3ef9dd787983429902b1bf9ab5 82 SUPERFAMILY SSF54285 1 82 2.43E-14 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp R615_16475 44c70e3ef9dd787983429902b1bf9ab5 82 Pfam PF02597 ThiS family 3 82 3.0E-10 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 R615_16475 44c70e3ef9dd787983429902b1bf9ab5 82 Gene3D G3DSA:3.10.20.30 1 82 3.3E-18 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_15015 e2a0a92f38c563f2de5217d63a69ef55 164 Gene3D G3DSA:3.20.20.450 1 163 4.6E-44 T 12-10-2018 IPR035919 EAL domain superfamily R615_15015 e2a0a92f38c563f2de5217d63a69ef55 164 Pfam PF00563 EAL domain 6 151 1.9E-32 T 12-10-2018 IPR001633 EAL domain R615_15015 e2a0a92f38c563f2de5217d63a69ef55 164 SUPERFAMILY SSF141868 2 152 1.57E-41 T 12-10-2018 IPR035919 EAL domain superfamily R615_15015 e2a0a92f38c563f2de5217d63a69ef55 164 SMART SM00052 1 156 4.1E-9 T 12-10-2018 IPR001633 EAL domain R615_02920 de0f58b641ebea89d87241029e9ea417 298 Gene3D G3DSA:1.20.1600.10 1 289 1.1E-31 T 12-10-2018 R615_02920 de0f58b641ebea89d87241029e9ea417 298 Pfam PF02321 Outer membrane efflux protein 113 282 1.2E-12 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_02920 de0f58b641ebea89d87241029e9ea417 298 SUPERFAMILY SSF56954 3 288 2.09E-28 T 12-10-2018 R615_16830 8ccf1f2822e2b75cab8bfcfd2eeae41b 269 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 256 6.2E-76 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 R615_16830 8ccf1f2822e2b75cab8bfcfd2eeae41b 269 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 263 3.0E-78 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 R615_16830 8ccf1f2822e2b75cab8bfcfd2eeae41b 269 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 262 19.16 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 R615_16830 8ccf1f2822e2b75cab8bfcfd2eeae41b 269 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 Gene3D G3DSA:1.10.860.10 13 176 5.4E-54 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 21 456 1.4E-166 T 12-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 SUPERFAMILY SSF52540 186 455 9.12E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 SUPERFAMILY SSF48024 19 131 1.44E-36 T 12-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 Pfam PF03796 DnaB-like helicase C terminal domain 198 454 2.6E-106 T 12-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 Gene3D G3DSA:3.40.50.300 177 462 1.3E-99 T 12-10-2018 R615_15650 c4384fe3b3a0ebbea4ce8ef2978775c0 465 Pfam PF00772 DnaB-like helicase N terminal domain 21 122 6.3E-35 T 12-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 R615_11635 f3c9d318b0d1b7c62eeea9d94faa9d91 143 Gene3D G3DSA:1.20.1480.40 18 143 5.2E-22 T 12-10-2018 R615_11635 f3c9d318b0d1b7c62eeea9d94faa9d91 143 Pfam PF16133 Domain of unknown function (DUF4844) 29 139 4.9E-31 T 12-10-2018 IPR032301 Protein of unknown function DUF4844 R615_09685 fa500c21ec607a5da49887f249a95db7 239 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 23 170 5.9E-17 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 R615_09685 fa500c21ec607a5da49887f249a95db7 239 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 11 228 1.3E-25 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 Gene3D G3DSA:2.40.30.20 1 93 1.4E-25 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 SUPERFAMILY SSF63380 97 201 1.28E-26 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_11375 9e0f39ba5969f621445f2a0be4319707 216 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 8.7E-57 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 PIRSF PIRSF000498 1 210 2.3E-57 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 Pfam PF00677 Lumazine binding domain 104 188 4.4E-19 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 Pfam PF00677 Lumazine binding domain 3 91 5.5E-17 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 Gene3D G3DSA:2.40.30.20 98 194 1.6E-25 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 R615_11375 9e0f39ba5969f621445f2a0be4319707 216 SUPERFAMILY SSF63380 1 97 5.02E-20 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 SUPERFAMILY SSF75138 221 344 1.79E-25 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Pfam PF01515 Phosphate acetyl/butaryl transferase 382 697 6.3E-119 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 397 697 3.5E-124 T 12-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Gene3D G3DSA:3.40.50.300 3 187 1.2E-12 T 12-10-2018 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Pfam PF13500 AAA domain 4 221 2.4E-31 T 12-10-2018 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 PIRSF PIRSF006107 1 705 0.0 T 12-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Gene3D G3DSA:3.40.1390.20 215 358 1.5E-19 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Pfam PF07085 DRTGG domain 225 336 7.4E-30 T 12-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Gene3D G3DSA:3.40.50.10750 520 673 7.2E-130 T 12-10-2018 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 SUPERFAMILY SSF53659 383 701 1.32E-87 T 12-10-2018 R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 SUPERFAMILY SSF52540 1 231 3.8E-26 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12150 5e4c9853cbd59776b65fe629a638b72a 706 Gene3D G3DSA:3.40.50.10950 388 699 7.2E-130 T 12-10-2018 R615_00170 98047b0f5df9886b895014926ad73b4a 323 Gene3D G3DSA:3.40.50.720 3 317 5.7E-120 T 12-10-2018 R615_00170 98047b0f5df9886b895014926ad73b4a 323 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 323 48.539 T 12-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 R615_00170 98047b0f5df9886b895014926ad73b4a 323 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 247 2.1E-45 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 R615_00170 98047b0f5df9886b895014926ad73b4a 323 SUPERFAMILY SSF51735 2 321 8.77E-61 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00170 98047b0f5df9886b895014926ad73b4a 323 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 322 2.2E-129 T 12-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 R615_00170 98047b0f5df9886b895014926ad73b4a 323 Gene3D G3DSA:3.90.25.10 173 305 5.7E-120 T 12-10-2018 R615_16035 c0856f5ca0010626c4b74eea4dbd2700 330 Gene3D G3DSA:3.40.190.170 14 327 9.4E-72 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_16035 c0856f5ca0010626c4b74eea4dbd2700 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 26 305 3.2E-42 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 R615_04040 9f0ee5dbe6ae8886df79777e1fc4942e 152 Pfam PF02576 RimP N-terminal domain 10 82 1.2E-29 T 12-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal R615_04040 9f0ee5dbe6ae8886df79777e1fc4942e 152 Gene3D G3DSA:3.30.300.70 3 79 8.2E-26 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily R615_04040 9f0ee5dbe6ae8886df79777e1fc4942e 152 Pfam PF17384 RimP C-terminal SH3 domain 85 150 5.0E-17 T 12-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal R615_04040 9f0ee5dbe6ae8886df79777e1fc4942e 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 5 150 24.743 T 12-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 R615_04040 9f0ee5dbe6ae8886df79777e1fc4942e 152 SUPERFAMILY SSF75420 4 82 3.01E-25 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily R615_04040 9f0ee5dbe6ae8886df79777e1fc4942e 152 SUPERFAMILY SSF74942 83 150 3.4E-18 T 12-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily R615_06925 d280f3102411327969fd130fd7b23b3f 285 SUPERFAMILY SSF103481 183 281 1.06E-14 T 12-10-2018 R615_06925 d280f3102411327969fd130fd7b23b3f 285 SUPERFAMILY SSF103481 42 143 6.67E-17 T 12-10-2018 R615_06925 d280f3102411327969fd130fd7b23b3f 285 Pfam PF00892 EamA-like transporter family 149 276 7.5E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_06925 d280f3102411327969fd130fd7b23b3f 285 Pfam PF00892 EamA-like transporter family 9 139 1.4E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_10675 f48f045d74f05a417227561bb5f79803 139 SUPERFAMILY SSF46955 6 117 3.22E-25 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_10675 f48f045d74f05a417227561bb5f79803 139 Pfam PF13411 MerR HTH family regulatory protein 6 70 1.1E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_10675 f48f045d74f05a417227561bb5f79803 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 1.6E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_10675 f48f045d74f05a417227561bb5f79803 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 1.6E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_10675 f48f045d74f05a417227561bb5f79803 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 1.6E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_10675 f48f045d74f05a417227561bb5f79803 139 SMART SM00422 5 73 2.3E-17 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_10675 f48f045d74f05a417227561bb5f79803 139 Gene3D G3DSA:1.10.1660.10 1 124 5.9E-27 T 12-10-2018 R615_13125 6c45ca7969ff723f052160cc38e07482 419 SUPERFAMILY SSF56349 112 407 1.32E-33 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 R615_13125 6c45ca7969ff723f052160cc38e07482 419 Pfam PF00589 Phage integrase family 243 405 1.7E-10 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 R615_13125 6c45ca7969ff723f052160cc38e07482 419 Gene3D G3DSA:1.10.443.10 236 410 3.4E-24 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 R615_12055 3c0b860a02ee9a79f84d990711aafc99 62 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 55 1.0E-20 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 R615_12055 3c0b860a02ee9a79f84d990711aafc99 62 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 5.6E-18 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 R615_00535 68b6580ad461a5beb094e194c5744477 712 SUPERFAMILY SSF46626 444 712 1.94E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_01085 6d6491a97d709bb44820519c095d5c4d 83 Pfam PF06611 Protein of unknown function (DUF1145) 1 56 1.6E-12 T 12-10-2018 IPR009525 Protein of unknown function DUF1145 R615_08185 87a45db0308b83a3b32f70fb86e66746 224 Pfam PF16537 Type II secretion system protein B 154 211 9.6E-19 T 12-10-2018 IPR032389 Type II secretion system protein B R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 Pfam PF01578 Cytochrome C assembly protein 26 188 9.6E-27 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 125 145 5.2E-54 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 66 86 5.2E-54 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 49 66 5.2E-54 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 208 232 5.2E-54 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 104 124 5.2E-54 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 160 186 5.2E-54 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12060 3f935ebf4e9eda41a86b811f5a7e5dd7 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 49 232 4.3E-76 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_10575 b9f3d4a66b7f6ffd6b5f4a563dc40dd1 97 SUPERFAMILY SSF46689 2 90 1.15E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_10575 b9f3d4a66b7f6ffd6b5f4a563dc40dd1 97 Gene3D G3DSA:1.10.10.60 7 89 1.7E-11 T 12-10-2018 R615_10575 b9f3d4a66b7f6ffd6b5f4a563dc40dd1 97 Pfam PF01527 Transposase 4 70 1.5E-15 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 R615_12435 02eeb01ad923679a4d836ae532ea1120 275 SUPERFAMILY SSF109604 6 256 1.12E-59 T 12-10-2018 R615_12435 02eeb01ad923679a4d836ae532ea1120 275 Pfam PF08668 HDOD domain 13 205 3.7E-52 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD R615_12435 02eeb01ad923679a4d836ae532ea1120 275 Gene3D G3DSA:1.10.3210.10 1 270 8.0E-69 T 12-10-2018 R615_08400 908c4dc985c4602c4df4b4620b860ede 144 Gene3D G3DSA:3.30.420.10 1 144 2.7E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_08400 908c4dc985c4602c4df4b4620b860ede 144 SUPERFAMILY SSF53098 3 140 1.21E-59 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_08400 908c4dc985c4602c4df4b4620b860ede 144 Pfam PF00075 RNase H 3 139 4.1E-51 T 12-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 R615_08400 908c4dc985c4602c4df4b4620b860ede 144 Hamap MF_00042 Ribonuclease H [rnhA]. 1 144 32.465 T 12-10-2018 IPR022892 Ribonuclease HI GO:0004523 R615_01005 50559c03bf171d9e5c17ace369e43184 219 SUPERFAMILY SSF46689 3 70 5.64E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_01005 50559c03bf171d9e5c17ace369e43184 219 Pfam PF13972 Bacterial transcriptional repressor 56 199 6.8E-43 T 12-10-2018 IPR025722 Bacterial transcriptional repressor TetR R615_01005 50559c03bf171d9e5c17ace369e43184 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 1.2E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_01005 50559c03bf171d9e5c17ace369e43184 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 1.2E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_01005 50559c03bf171d9e5c17ace369e43184 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 50 8.6E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_01005 50559c03bf171d9e5c17ace369e43184 219 Gene3D G3DSA:1.10.357.10 1 216 5.8E-71 T 12-10-2018 R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 PIRSF PIRSF000485 1 481 9.4E-162 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 SUPERFAMILY SSF56235 2 257 5.48E-69 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 Gene3D G3DSA:3.60.20.10 2 412 2.2E-151 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 Pfam PF00156 Phosphoribosyl transferase domain 277 393 7.6E-9 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 465 44.506 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 Gene3D G3DSA:3.40.50.2020 277 441 2.2E-151 T 12-10-2018 R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 SUPERFAMILY SSF53271 250 484 1.97E-72 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 465 5.2E-159 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 R615_09810 23acc50c0bb63c19ff0f319ca5997d60 507 Pfam PF13522 Glutamine amidotransferase domain 66 208 1.5E-14 T 12-10-2018 R615_02310 231cf2e5a3da1575bd9b6aa8db00ed2e 220 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 12 220 37.132 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 R615_02310 231cf2e5a3da1575bd9b6aa8db00ed2e 220 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 17 214 2.7E-60 T 12-10-2018 R615_02310 231cf2e5a3da1575bd9b6aa8db00ed2e 220 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 142 157 - T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 R615_02310 231cf2e5a3da1575bd9b6aa8db00ed2e 220 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 12 219 1.8E-64 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 R615_02310 231cf2e5a3da1575bd9b6aa8db00ed2e 220 SUPERFAMILY SSF53335 23 218 4.66E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_02310 231cf2e5a3da1575bd9b6aa8db00ed2e 220 Gene3D G3DSA:3.40.50.150 4 219 8.4E-73 T 12-10-2018 R615_07180 66b69cbc1a883847de5e1dd2e5515aac 86 SUPERFAMILY SSF54285 6 86 2.45E-10 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp R615_07180 66b69cbc1a883847de5e1dd2e5515aac 86 Pfam PF02597 ThiS family 9 86 8.2E-7 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 R615_07180 66b69cbc1a883847de5e1dd2e5515aac 86 Gene3D G3DSA:3.10.20.30 6 86 5.9E-14 T 12-10-2018 IPR012675 Beta-grasp domain superfamily R615_03165 9811e88a0c1968ef49b84d2e6ab8da45 208 Pfam PF09335 SNARE associated Golgi protein 50 167 5.3E-16 T 12-10-2018 IPR032816 SNARE associated Golgi protein R615_05605 d4e674f9ec9dd126b583d53244cede28 212 Pfam PF09347 Domain of unknown function (DUF1989) 17 185 2.0E-62 T 12-10-2018 IPR018959 Protein of unknown function DUF1989 R615_05605 d4e674f9ec9dd126b583d53244cede28 212 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 14 211 1.4E-99 T 12-10-2018 IPR017791 Urea carboxylase-associated protein 1 R615_01575 4e77c4aad23af67c80f57b0e469eb8d8 288 Pfam PF12697 Alpha/beta hydrolase family 37 276 6.4E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_01575 4e77c4aad23af67c80f57b0e469eb8d8 288 SUPERFAMILY SSF53474 11 278 1.39E-40 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_01575 4e77c4aad23af67c80f57b0e469eb8d8 288 Gene3D G3DSA:3.40.50.1820 4 288 1.9E-67 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_01575 4e77c4aad23af67c80f57b0e469eb8d8 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 234 248 8.6E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_01575 4e77c4aad23af67c80f57b0e469eb8d8 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 8.6E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_01575 4e77c4aad23af67c80f57b0e469eb8d8 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 8.6E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_00245 0b60348181ed91707088f7c1924e3383 205 Pfam PF02661 Fic/DOC family 59 157 7.6E-15 T 12-10-2018 IPR003812 Fido domain R615_00245 0b60348181ed91707088f7c1924e3383 205 Gene3D G3DSA:1.10.3290.10 2 200 3.1E-52 T 12-10-2018 IPR036597 Fido-like domain superfamily R615_00245 0b60348181ed91707088f7c1924e3383 205 SUPERFAMILY SSF140931 45 183 3.66E-26 T 12-10-2018 IPR036597 Fido-like domain superfamily R615_00790 0976a6c4ee1659967b1e5ebb47f31a42 308 Gene3D G3DSA:3.40.50.2300 1 130 8.2E-30 T 12-10-2018 R615_00790 0976a6c4ee1659967b1e5ebb47f31a42 308 Pfam PF00072 Response regulator receiver domain 6 119 3.9E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_00790 0976a6c4ee1659967b1e5ebb47f31a42 308 SUPERFAMILY SSF52172 2 129 5.98E-29 T 12-10-2018 IPR011006 CheY-like superfamily R615_00790 0976a6c4ee1659967b1e5ebb47f31a42 308 SMART SM00448 4 119 3.1E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_06425 0387f8ab36b8f87e9a6fea0d1f132c18 635 Pfam PF02333 Phytase 149 222 6.8E-5 T 12-10-2018 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 R615_06425 0387f8ab36b8f87e9a6fea0d1f132c18 635 Pfam PF02333 Phytase 309 633 3.6E-89 T 12-10-2018 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 R615_06425 0387f8ab36b8f87e9a6fea0d1f132c18 635 SUPERFAMILY SSF50956 91 257 4.97E-18 T 12-10-2018 R615_06425 0387f8ab36b8f87e9a6fea0d1f132c18 635 Gene3D G3DSA:2.120.10.30 311 635 1.3E-122 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_06425 0387f8ab36b8f87e9a6fea0d1f132c18 635 Gene3D G3DSA:2.120.10.30 86 263 1.1E-18 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_06425 0387f8ab36b8f87e9a6fea0d1f132c18 635 SUPERFAMILY SSF50956 315 634 2.35E-77 T 12-10-2018 R615_01730 53633d9a45511a61a77016a994f4f347 159 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 12 154 8.5E-33 T 12-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein R615_01730 53633d9a45511a61a77016a994f4f347 159 SUPERFAMILY SSF160719 37 146 6.54E-10 T 12-10-2018 R615_01730 53633d9a45511a61a77016a994f4f347 159 Pfam PF04965 Gene 25-like lysozyme 36 135 3.4E-23 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD R615_14540 4a5761e33769fe27c259a27554e9071a 328 Pfam PF03060 Nitronate monooxygenase 93 313 1.8E-21 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 R615_14540 4a5761e33769fe27c259a27554e9071a 328 Gene3D G3DSA:3.20.20.70 7 326 1.7E-69 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_14540 4a5761e33769fe27c259a27554e9071a 328 SUPERFAMILY SSF51412 9 306 1.01E-52 T 12-10-2018 R615_17515 7fba71b8c5a81478b538b2e3d0c05fef 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.008 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_17515 7fba71b8c5a81478b538b2e3d0c05fef 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 12-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_17515 7fba71b8c5a81478b538b2e3d0c05fef 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 5.1E-27 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_17515 7fba71b8c5a81478b538b2e3d0c05fef 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 3.0E-13 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_17515 7fba71b8c5a81478b538b2e3d0c05fef 44 Pfam PF00468 Ribosomal protein L34 1 44 5.3E-25 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_10825 1bb4944fee01bbdd85dbd994770f3432 153 SUPERFAMILY SSF102400 1 143 9.68E-34 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily R615_10825 1bb4944fee01bbdd85dbd994770f3432 153 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 139 3.6E-33 T 12-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 R615_10825 1bb4944fee01bbdd85dbd994770f3432 153 Gene3D G3DSA:3.40.50.10110 1 142 2.9E-39 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily R615_02460 76d59688887edab2c7a6fa26defca6ca 180 Pfam PF00929 Exonuclease 8 169 1.5E-35 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_02460 76d59688887edab2c7a6fa26defca6ca 180 SUPERFAMILY SSF53098 4 178 2.82E-47 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_02460 76d59688887edab2c7a6fa26defca6ca 180 Hamap MF_00045 Oligoribonuclease [orn]. 2 180 42.559 T 12-10-2018 IPR022894 Oligoribonuclease GO:0000175 R615_02460 76d59688887edab2c7a6fa26defca6ca 180 SMART SM00479 6 179 8.5E-32 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III R615_02460 76d59688887edab2c7a6fa26defca6ca 180 Gene3D G3DSA:3.30.420.10 1 180 7.9E-72 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 R615_15200 c66702b782bddcd28f0d1183a90ecbd3 125 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 103 2.5E-24 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 316 1.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 316 332 1.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 SUPERFAMILY SSF46689 286 334 8.06E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 Gene3D G3DSA:1.10.10.60 233 337 2.7E-23 T 12-10-2018 R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 Pfam PF12833 Helix-turn-helix domain 257 334 9.9E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 208 2.7E-34 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_05315 1cc78243d7fd763d24e65bdfb4039ac0 337 SMART SM00342 250 332 7.3E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_03030 c50010c4f22b4d912bf8cde1fa6a3e37 151 Pfam PF00258 Flavodoxin 9 141 5.0E-19 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 R615_03030 c50010c4f22b4d912bf8cde1fa6a3e37 151 Gene3D G3DSA:3.40.50.360 1 149 7.1E-37 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_03030 c50010c4f22b4d912bf8cde1fa6a3e37 151 SUPERFAMILY SSF52218 1 149 1.2E-33 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_16950 d86ea261c93a39c1dd1819f85f2d1d02 256 SMART SM00062 24 250 0.0094 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_16950 d86ea261c93a39c1dd1819f85f2d1d02 256 Gene3D G3DSA:3.40.190.10 105 210 2.6E-14 T 12-10-2018 R615_16950 d86ea261c93a39c1dd1819f85f2d1d02 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 246 1.2E-13 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF R615_16950 d86ea261c93a39c1dd1819f85f2d1d02 256 Gene3D G3DSA:3.40.190.10 27 245 2.6E-14 T 12-10-2018 R615_16950 d86ea261c93a39c1dd1819f85f2d1d02 256 SUPERFAMILY SSF53850 24 246 1.58E-24 T 12-10-2018 R615_08585 4820878b084abcd4c248829ca797b324 145 Pfam PF05099 Tellurite resistance protein TerB 15 139 4.0E-35 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal R615_08585 4820878b084abcd4c248829ca797b324 145 SUPERFAMILY SSF158682 2 143 1.44E-23 T 12-10-2018 IPR029024 TerB-like R615_08585 4820878b084abcd4c248829ca797b324 145 Gene3D G3DSA:1.10.3680.10 1 135 1.3E-16 T 12-10-2018 IPR029024 TerB-like R615_00105 cd4d493e61b38b8968b8eb42fffbd598 162 Gene3D G3DSA:3.10.490.10 1 154 2.1E-20 T 12-10-2018 R615_00105 cd4d493e61b38b8968b8eb42fffbd598 162 SUPERFAMILY SSF110857 4 150 2.88E-17 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily R615_00105 cd4d493e61b38b8968b8eb42fffbd598 162 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 6 150 1.5E-15 T 12-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like R615_01680 7f35d890c65879a5cccba2381157110c 537 Pfam PF00498 FHA domain 29 96 3.7E-15 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 R615_01680 7f35d890c65879a5cccba2381157110c 537 SUPERFAMILY SSF49879 28 106 8.23E-20 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 R615_01680 7f35d890c65879a5cccba2381157110c 537 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 238 525 7.2E-61 T 12-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein R615_01680 7f35d890c65879a5cccba2381157110c 537 Gene3D G3DSA:2.60.200.20 6 108 4.9E-20 T 12-10-2018 R615_01680 7f35d890c65879a5cccba2381157110c 537 SMART SM00240 27 78 8.9E-7 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 R615_15690 1a48942162621ee257478f95f6f4e6bc 179 PIRSF PIRSF038996 1 173 3.8E-59 T 12-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 R615_15690 1a48942162621ee257478f95f6f4e6bc 179 SUPERFAMILY SSF52218 3 170 4.19E-44 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_15690 1a48942162621ee257478f95f6f4e6bc 179 Gene3D G3DSA:3.40.50.360 3 174 4.7E-46 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_15690 1a48942162621ee257478f95f6f4e6bc 179 Pfam PF00258 Flavodoxin 6 161 2.8E-22 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 R615_15690 1a48942162621ee257478f95f6f4e6bc 179 TIGRFAM TIGR01752 flav_long: flavodoxin 4 169 7.3E-61 T 12-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 R615_09665 bc0fccc886a99b0f131ed9a23912b4d2 138 Gene3D G3DSA:3.10.129.10 1 135 5.7E-31 T 12-10-2018 R615_09665 bc0fccc886a99b0f131ed9a23912b4d2 138 SUPERFAMILY SSF54637 3 133 6.1E-33 T 12-10-2018 IPR029069 HotDog domain superfamily R615_09665 bc0fccc886a99b0f131ed9a23912b4d2 138 Pfam PF03061 Thioesterase superfamily 16 97 1.6E-18 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_09665 bc0fccc886a99b0f131ed9a23912b4d2 138 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 8 100 1.1E-21 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 R615_04985 5cfe8a06427092398b0a8385190043d0 295 Pfam PF04321 RmlD substrate binding domain 4 289 1.1E-92 T 12-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 R615_04985 5cfe8a06427092398b0a8385190043d0 295 Gene3D G3DSA:3.90.25.10 163 286 2.3E-96 T 12-10-2018 R615_04985 5cfe8a06427092398b0a8385190043d0 295 SUPERFAMILY SSF51735 4 289 4.21E-88 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04985 5cfe8a06427092398b0a8385190043d0 295 Gene3D G3DSA:3.40.50.720 6 280 2.3E-96 T 12-10-2018 R615_04985 5cfe8a06427092398b0a8385190043d0 295 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 5 289 3.0E-91 T 12-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 R615_03185 d0c2dee1222e94f7e41274fbd0645283 151 Pfam PF02810 SEC-C motif 8 24 5.1E-5 T 12-10-2018 IPR004027 SEC-C motif R615_03185 d0c2dee1222e94f7e41274fbd0645283 151 Pfam PF02810 SEC-C motif 134 151 7.3E-9 T 12-10-2018 IPR004027 SEC-C motif R615_03185 d0c2dee1222e94f7e41274fbd0645283 151 SUPERFAMILY SSF103642 130 151 2.13E-7 T 12-10-2018 R615_03185 d0c2dee1222e94f7e41274fbd0645283 151 SUPERFAMILY SSF54427 29 124 5.36E-32 T 12-10-2018 IPR032710 NTF2-like domain superfamily R615_03185 d0c2dee1222e94f7e41274fbd0645283 151 Gene3D G3DSA:3.10.450.50 2 151 2.1E-47 T 12-10-2018 R615_03185 d0c2dee1222e94f7e41274fbd0645283 151 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 6 124 26.133 T 12-10-2018 IPR023006 Uncharacterised protein family UPF0225 R615_00360 94397937d1dbd35684581fcc2215bf27 262 SUPERFAMILY SSF56219 6 261 1.11E-33 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_00360 94397937d1dbd35684581fcc2215bf27 262 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 23 251 3.2E-14 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase R615_00360 94397937d1dbd35684581fcc2215bf27 262 Gene3D G3DSA:3.60.10.10 19 261 3.2E-35 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_08410 8ac7c9a9c4ebccf85cd5f4afe867cdd1 503 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 501 2.0E-230 T 12-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 R615_08410 8ac7c9a9c4ebccf85cd5f4afe867cdd1 503 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 503 312.799 T 12-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 R615_10920 52751635b2fbcaf3349e07eca63b517b 70 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 9 66 1.7E-16 T 12-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 R615_10920 52751635b2fbcaf3349e07eca63b517b 70 Gene3D G3DSA:1.10.287.380 1 68 2.3E-13 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 R615_10920 52751635b2fbcaf3349e07eca63b517b 70 SUPERFAMILY SSF46589 9 66 2.56E-13 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 R615_06885 aa2e16b7daf45f83b975799b662fa253 608 SUPERFAMILY SSF56801 45 572 1.96E-102 T 12-10-2018 R615_06885 aa2e16b7daf45f83b975799b662fa253 608 Gene3D G3DSA:3.40.50.12780 41 470 2.2E-70 T 12-10-2018 R615_06885 aa2e16b7daf45f83b975799b662fa253 608 Pfam PF00501 AMP-binding enzyme 50 474 2.4E-69 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_06885 aa2e16b7daf45f83b975799b662fa253 608 Gene3D G3DSA:3.30.300.30 471 572 3.3E-12 T 12-10-2018 R615_06885 aa2e16b7daf45f83b975799b662fa253 608 Pfam PF13193 AMP-binding enzyme C-terminal domain 483 560 3.8E-9 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_06885 aa2e16b7daf45f83b975799b662fa253 608 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_03860 e8d1ea224aeaaf4ea60e48adc6cc474f 174 Gene3D G3DSA:1.10.260.40 60 131 1.6E-11 T 12-10-2018 R615_03860 e8d1ea224aeaaf4ea60e48adc6cc474f 174 SUPERFAMILY SSF47413 57 120 2.03E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_03860 e8d1ea224aeaaf4ea60e48adc6cc474f 174 Pfam PF01381 Helix-turn-helix 70 120 2.4E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_03860 e8d1ea224aeaaf4ea60e48adc6cc474f 174 SMART SM00530 69 123 1.4E-5 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_04425 e0d531a4ee307a6fa81ca798077a642e 96 Pfam PF01381 Helix-turn-helix 37 73 1.7E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_04425 e0d531a4ee307a6fa81ca798077a642e 96 SUPERFAMILY SSF47413 37 83 3.75E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_04425 e0d531a4ee307a6fa81ca798077a642e 96 Gene3D G3DSA:1.10.260.40 35 96 5.6E-21 T 12-10-2018 R615_08730 ca28b770abdd70ed53af74c24e72bab8 310 Gene3D G3DSA:3.40.800.20 1 304 6.5E-99 T 12-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 R615_08730 ca28b770abdd70ed53af74c24e72bab8 310 PRINTS PR01270 Histone deacetylase superfamily signature 122 145 1.9E-14 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 R615_08730 ca28b770abdd70ed53af74c24e72bab8 310 PRINTS PR01270 Histone deacetylase superfamily signature 156 171 1.9E-14 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 R615_08730 ca28b770abdd70ed53af74c24e72bab8 310 PRINTS PR01270 Histone deacetylase superfamily signature 235 245 1.9E-14 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 R615_08730 ca28b770abdd70ed53af74c24e72bab8 310 SUPERFAMILY SSF52768 1 304 5.76E-94 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily R615_08730 ca28b770abdd70ed53af74c24e72bab8 310 Pfam PF00850 Histone deacetylase domain 20 302 5.4E-74 T 12-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 R615_02550 2380717334b00727a692075e939d0455 283 Pfam PF00756 Putative esterase 28 275 1.0E-62 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 R615_02550 2380717334b00727a692075e939d0455 283 SUPERFAMILY SSF53474 3 281 2.32E-91 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_02550 2380717334b00727a692075e939d0455 283 Gene3D G3DSA:3.40.50.1820 3 282 6.5E-96 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_02550 2380717334b00727a692075e939d0455 283 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 4 278 1.5E-122 T 12-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 R615_04305 5a9bac0fd1ab6b695231276217f7ac2c 317 Pfam PF12833 Helix-turn-helix domain 232 313 5.9E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_04305 5a9bac0fd1ab6b695231276217f7ac2c 317 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 263 307 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 R615_04305 5a9bac0fd1ab6b695231276217f7ac2c 317 Gene3D G3DSA:1.10.10.60 210 315 2.6E-35 T 12-10-2018 R615_04305 5a9bac0fd1ab6b695231276217f7ac2c 317 SMART SM00342 226 311 2.5E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_04305 5a9bac0fd1ab6b695231276217f7ac2c 317 SUPERFAMILY SSF46689 211 260 2.24E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_15495 e5dbc1662d0f4561b622138bc9438b97 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 282 8.0E-34 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 Pfam PF13180 PDZ domain 290 378 4.3E-13 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 SUPERFAMILY SSF50156 249 373 3.02E-20 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 SMART SM00228 290 373 8.2E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 PRINTS PR00834 HtrA/DegQ protease family signature 126 138 2.8E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 PRINTS PR00834 HtrA/DegQ protease family signature 244 261 2.8E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 PRINTS PR00834 HtrA/DegQ protease family signature 331 343 2.8E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 PRINTS PR00834 HtrA/DegQ protease family signature 187 211 2.8E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 PRINTS PR00834 HtrA/DegQ protease family signature 147 167 2.8E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 2.8E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 Gene3D G3DSA:2.30.42.10 285 391 3.2E-24 T 12-10-2018 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 Pfam PF13365 Trypsin-like peptidase domain 117 251 1.3E-32 T 12-10-2018 R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 SUPERFAMILY SSF50494 61 276 3.99E-63 T 12-10-2018 IPR009003 Peptidase S1, PA clan R615_02195 a93afcbdfad46ce3b4aa5f64443400d6 392 Gene3D G3DSA:2.40.10.120 63 283 1.9E-76 T 12-10-2018 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 Gene3D G3DSA:1.20.120.1560 586 717 2.3E-29 T 12-10-2018 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 Pfam PF00120 Glutamine synthetase, catalytic domain 199 401 3.4E-21 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 SMART SM01230 192 477 5.3E-47 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 Pfam PF12437 Glutamine synthetase type III N terminal 29 191 2.0E-64 T 12-10-2018 IPR022147 Glutamine synthetase type III N-terminal GO:0004356 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 337 352 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 SUPERFAMILY SSF55931 215 606 6.67E-73 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 R615_10150 a1cfcf3f3bdae4f3560511b487b9a57a 717 Gene3D G3DSA:3.30.590.10 199 418 4.8E-29 T 12-10-2018 R615_00355 d65647ee0a803618c299b4d902a15c0b 549 Gene3D G3DSA:3.30.70.270 383 548 2.1E-56 T 12-10-2018 R615_00355 d65647ee0a803618c299b4d902a15c0b 549 SMART SM00267 378 549 2.6E-55 T 12-10-2018 IPR000160 GGDEF domain R615_00355 d65647ee0a803618c299b4d902a15c0b 549 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 546 4.5E-49 T 12-10-2018 IPR000160 GGDEF domain R615_00355 d65647ee0a803618c299b4d902a15c0b 549 Pfam PF00990 Diguanylate cyclase, GGDEF domain 389 545 8.6E-45 T 12-10-2018 IPR000160 GGDEF domain R615_00355 d65647ee0a803618c299b4d902a15c0b 549 SUPERFAMILY SSF55073 394 547 4.16E-48 T 12-10-2018 IPR029787 Nucleotide cyclase R615_11400 9d176afe8693b7deb5d5842786a2ec04 92 Gene3D G3DSA:1.10.150.20 1 88 8.1E-17 T 12-10-2018 R615_11400 9d176afe8693b7deb5d5842786a2ec04 92 Pfam PF04994 TfoX C-terminal domain 2 79 3.8E-21 T 12-10-2018 IPR007077 TfoX, C-terminal R615_17485 90831da112373dee07815d69eb4a8141 1218 SMART SM00490 950 1033 7.2E-4 T 12-10-2018 IPR001650 Helicase, C-terminal R615_17485 90831da112373dee07815d69eb4a8141 1218 Gene3D G3DSA:3.40.50.300 925 1070 2.1E-10 T 12-10-2018 R615_17485 90831da112373dee07815d69eb4a8141 1218 SUPERFAMILY SSF52540 508 825 2.18E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_17485 90831da112373dee07815d69eb4a8141 1218 Pfam PF00271 Helicase conserved C-terminal domain 927 1031 1.3E-8 T 12-10-2018 IPR001650 Helicase, C-terminal R615_17485 90831da112373dee07815d69eb4a8141 1218 SUPERFAMILY SSF52540 546 1075 1.26E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 SUPERFAMILY SSF50249 566 641 9.0E-6 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 SUPERFAMILY SSF50249 9 82 1.14E-11 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 Pfam PF00773 RNB domain 197 520 3.5E-81 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 Pfam PF08206 Ribonuclease B OB domain 26 71 4.3E-8 T 12-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 SUPERFAMILY SSF50249 87 171 6.0E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 SMART SM00955 197 521 2.1E-107 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 SMART SM00357 25 82 4.5E-8 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 12 642 2.2E-130 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 Gene3D G3DSA:2.40.50.140 7 85 5.0E-21 T 12-10-2018 R615_12380 2c4dd2dd3acabe450fd0c9ec913dc6a2 643 SUPERFAMILY SSF50249 158 559 6.85E-101 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_13325 20e351c423c3b1448a1411741fd0d511 158 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 117 127 - T 12-10-2018 IPR020549 Endoribonuclease YbeY, conserved site R615_13325 20e351c423c3b1448a1411741fd0d511 158 SUPERFAMILY SSF55486 23 153 3.91E-49 T 12-10-2018 R615_13325 20e351c423c3b1448a1411741fd0d511 158 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 151 24.547 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 R615_13325 20e351c423c3b1448a1411741fd0d511 158 Gene3D G3DSA:3.40.390.30 2 158 1.1E-55 T 12-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 R615_13325 20e351c423c3b1448a1411741fd0d511 158 Pfam PF02130 Uncharacterized protein family UPF0054 22 146 2.5E-39 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 R615_13325 20e351c423c3b1448a1411741fd0d511 158 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 43 147 6.2E-38 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 Gene3D G3DSA:3.10.290.10 4 66 5.6E-9 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 70 231 3.2E-39 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 Gene3D G3DSA:3.30.70.580 67 234 1.0E-49 T 12-10-2018 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 108 122 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 SUPERFAMILY SSF55120 65 235 3.04E-43 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 SUPERFAMILY SSF55174 5 100 1.35E-8 T 12-10-2018 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 Gene3D G3DSA:3.30.70.1560 137 218 1.0E-49 T 12-10-2018 R615_10410 8992198d1b986acacf5c4476fc628ba1 244 Pfam PF00849 RNA pseudouridylate synthase 66 199 1.3E-16 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_16915 f7b94c690463cad9064d4ddaedf73d4b 200 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 185 1.0E-50 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase R615_16915 f7b94c690463cad9064d4ddaedf73d4b 200 PIRSF PIRSF006806 1 188 3.6E-41 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase R615_16915 f7b94c690463cad9064d4ddaedf73d4b 200 SUPERFAMILY SSF100950 1 191 2.51E-51 T 12-10-2018 IPR037171 NagB/RpiA transferase-like R615_16915 f7b94c690463cad9064d4ddaedf73d4b 200 Gene3D G3DSA:3.40.50.10420 1 197 2.5E-54 T 12-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily R615_16915 f7b94c690463cad9064d4ddaedf73d4b 200 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 185 3.6E-44 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase R615_15420 818aa38002c6221ea26fd2739650a05c 307 SUPERFAMILY SSF46689 208 257 1.54E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_15420 818aa38002c6221ea26fd2739650a05c 307 Gene3D G3DSA:1.10.10.60 198 255 2.7E-9 T 12-10-2018 R615_15420 818aa38002c6221ea26fd2739650a05c 307 Pfam PF12833 Helix-turn-helix domain 228 306 1.7E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_15420 818aa38002c6221ea26fd2739650a05c 307 SMART SM00342 222 304 1.6E-30 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_15420 818aa38002c6221ea26fd2739650a05c 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 288 304 1.5E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_15420 818aa38002c6221ea26fd2739650a05c 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 288 1.5E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_15420 818aa38002c6221ea26fd2739650a05c 307 Pfam PF06719 AraC-type transcriptional regulator N-terminus 36 191 7.6E-25 T 12-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal R615_15420 818aa38002c6221ea26fd2739650a05c 307 SUPERFAMILY SSF46689 258 305 1.76E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_15420 818aa38002c6221ea26fd2739650a05c 307 Gene3D G3DSA:1.10.10.60 256 306 4.5E-18 T 12-10-2018 R615_02585 24d3b7b718a668ec68452824c149b8f3 207 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 13 198 4.5E-41 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal R615_02585 24d3b7b718a668ec68452824c149b8f3 207 SUPERFAMILY SSF53639 10 204 1.12E-44 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily R615_02585 24d3b7b718a668ec68452824c149b8f3 207 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 207 95.935 T 12-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 R615_02585 24d3b7b718a668ec68452824c149b8f3 207 Gene3D G3DSA:3.40.225.10 6 205 6.3E-51 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily R615_02585 24d3b7b718a668ec68452824c149b8f3 207 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 14 203 7.4E-65 T 12-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 R615_02585 24d3b7b718a668ec68452824c149b8f3 207 SMART SM01007 12 199 1.6E-50 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 SMART SM00729 51 263 5.9E-39 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 228 318 5.9E-20 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 Hamap MF_01694 Biotin synthase [bioB]. 13 321 42.07 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 SUPERFAMILY SSF102114 13 318 6.41E-93 T 12-10-2018 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 Gene3D G3DSA:3.20.20.70 12 322 9.0E-129 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 SMART SM00876 228 320 1.1E-43 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 PIRSF PIRSF001619 1 327 1.1E-135 T 12-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 Pfam PF04055 Radical SAM superfamily 58 210 8.5E-15 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_14210 44d317cb7982fa0021a9a8a17e6dad00 354 TIGRFAM TIGR00433 bioB: biotin synthase 22 318 2.3E-124 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 R615_11010 0e0dac0351962f63421a9183653b3695 165 SUPERFAMILY SSF52833 21 162 2.27E-39 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11010 0e0dac0351962f63421a9183653b3695 165 Pfam PF00578 AhpC/TSA family 23 139 4.1E-23 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_11010 0e0dac0351962f63421a9183653b3695 165 Gene3D G3DSA:3.40.30.10 11 164 5.6E-44 T 12-10-2018 R615_12800 c8c12d87b211117b73444a68753d4262 228 SUPERFAMILY SSF89069 5 70 2.09E-13 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 R615_12800 c8c12d87b211117b73444a68753d4262 228 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 6 99 4.1E-22 T 12-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 R615_12800 c8c12d87b211117b73444a68753d4262 228 Gene3D G3DSA:1.10.10.880 5 70 5.1E-17 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 R615_13575 130016f01ba991fc82f73c90e29ce243 549 SMART SM00304 218 272 4.3E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_13575 130016f01ba991fc82f73c90e29ce243 549 SUPERFAMILY SSF58104 240 549 1.83E-72 T 12-10-2018 R615_13575 130016f01ba991fc82f73c90e29ce243 549 SMART SM00283 287 548 3.8E-62 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13575 130016f01ba991fc82f73c90e29ce243 549 Pfam PF00672 HAMP domain 218 268 2.2E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 R615_13575 130016f01ba991fc82f73c90e29ce243 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 515 4.1E-42 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13575 130016f01ba991fc82f73c90e29ce243 549 Gene3D G3DSA:1.10.287.950 218 549 9.3E-72 T 12-10-2018 R615_12005 275e4da44b2197be12960b9b7dca3998 332 SUPERFAMILY SSF49401 250 326 4.22E-5 T 12-10-2018 IPR008966 Adhesion domain superfamily R615_10910 f12ffe4b3b7669c381d52684186f26ed 292 SUPERFAMILY SSF49313 41 127 2.35E-7 T 12-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 R615_10910 f12ffe4b3b7669c381d52684186f26ed 292 Gene3D G3DSA:2.60.40.10 126 229 1.6E-5 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_10910 f12ffe4b3b7669c381d52684186f26ed 292 Gene3D G3DSA:2.60.40.10 38 124 4.5E-7 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 TIGRFAM TIGR01530 nadN: NAD nucleotidase 58 618 9.4E-133 T 12-10-2018 IPR006420 NAD pyrophosphatase/5-nucleotidase NadN GO:0008253|GO:0009166 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 Gene3D G3DSA:3.90.780.10 428 634 2.6E-59 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 ProSitePatterns PS00786 5'-nucleotidase signature 2. 153 164 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 Gene3D G3DSA:3.60.21.10 48 419 1.5E-107 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 SUPERFAMILY SSF55816 419 627 5.36E-48 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 Pfam PF02872 5'-nucleotidase, C-terminal domain 449 595 9.8E-39 T 12-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 Pfam PF00149 Calcineurin-like phosphoesterase 58 293 4.3E-7 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 PRINTS PR01607 Apyrase family signature 56 74 1.2E-32 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 PRINTS PR01607 Apyrase family signature 257 274 1.2E-32 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 PRINTS PR01607 Apyrase family signature 276 299 1.2E-32 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 PRINTS PR01607 Apyrase family signature 323 343 1.2E-32 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 PRINTS PR01607 Apyrase family signature 487 510 1.2E-32 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 PRINTS PR01607 Apyrase family signature 569 588 1.2E-32 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 R615_06455 568879a3f2282f5fbdbe67df04dcb550 658 SUPERFAMILY SSF56300 57 364 5.15E-72 T 12-10-2018 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 SUPERFAMILY SSF53649 55 553 3.09E-150 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 PRINTS PR00113 Alkaline phosphatase signature 129 144 4.2E-33 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 PRINTS PR00113 Alkaline phosphatase signature 176 196 4.2E-33 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 PRINTS PR00113 Alkaline phosphatase signature 73 93 4.2E-33 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 PRINTS PR00113 Alkaline phosphatase signature 350 379 4.2E-33 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 Gene3D G3DSA:3.40.720.10 40 562 2.3E-179 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 SMART SM00098 74 553 2.7E-160 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 R615_14270 89720c8ce4a805a1fde4627af9fd3a0d 563 Pfam PF00245 Alkaline phosphatase 73 552 1.1E-122 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 R615_09335 e708d8a12956530c6c97d485e9dbd5d1 221 Gene3D G3DSA:3.40.50.1000 11 209 1.1E-50 T 12-10-2018 IPR023214 HAD superfamily R615_09335 e708d8a12956530c6c97d485e9dbd5d1 221 Gene3D G3DSA:1.10.150.240 23 89 1.1E-50 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 R615_09335 e708d8a12956530c6c97d485e9dbd5d1 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 188 1.1E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_09335 e708d8a12956530c6c97d485e9dbd5d1 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 91 182 5.3E-12 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_09335 e708d8a12956530c6c97d485e9dbd5d1 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 187 6.8E-34 T 12-10-2018 R615_09335 e708d8a12956530c6c97d485e9dbd5d1 221 SUPERFAMILY SSF56784 6 217 9.67E-53 T 12-10-2018 IPR036412 HAD-like superfamily R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 Gene3D G3DSA:3.30.70.20 448 541 2.0E-36 T 12-10-2018 R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 SUPERFAMILY SSF51905 3 445 1.52E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 57 2.2E-6 T 12-10-2018 R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 Gene3D G3DSA:3.50.50.60 7 385 3.8E-188 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 443 543 2.8E-48 T 12-10-2018 R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 SUPERFAMILY SSF54373 210 306 3.37E-34 T 12-10-2018 R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 Gene3D G3DSA:3.30.9.90 79 447 3.8E-188 T 12-10-2018 R615_08785 f9a682f1baa07fbbef51d67eb1f7bd6d 546 SUPERFAMILY SSF54862 448 546 7.28E-29 T 12-10-2018 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 PIRSF PIRSF000106 39 416 1.1E-70 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 12-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 SMART SM00919 163 399 2.4E-135 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 SUPERFAMILY SSF53223 10 161 1.87E-51 T 12-10-2018 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 SMART SM01274 18 151 1.3E-76 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 Gene3D G3DSA:3.40.50.10380 1 160 9.7E-69 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 Pfam PF03949 Malic enzyme, NAD binding domain 165 357 1.2E-22 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 SUPERFAMILY SSF51735 163 410 4.69E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 Pfam PF00390 Malic enzyme, N-terminal domain 25 150 1.3E-25 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 R615_16960 19c39ba82b205c828bd0f6834ff5938f 420 Gene3D G3DSA:3.40.50.720 161 415 1.4E-79 T 12-10-2018 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 SUPERFAMILY SSF48173 195 467 1.44E-100 T 12-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 Pfam PF03441 FAD binding domain of DNA photolyase 274 465 3.7E-79 T 12-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 Gene3D G3DSA:1.10.579.10 292 470 1.9E-74 T 12-10-2018 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 Pfam PF00875 DNA photolyase 4 174 2.4E-43 T 12-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 SUPERFAMILY SSF52425 2 180 4.32E-47 T 12-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 Gene3D G3DSA:1.25.40.80 135 285 1.9E-78 T 12-10-2018 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 PRINTS PR00147 DNA photolyase signature 324 340 2.1E-27 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 PRINTS PR00147 DNA photolyase signature 144 160 2.1E-27 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 PRINTS PR00147 DNA photolyase signature 383 397 2.1E-27 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 PRINTS PR00147 DNA photolyase signature 344 362 2.1E-27 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 R615_03640 85f3a15c2c88dedfeba40b101ba8057d 471 Gene3D G3DSA:3.40.50.620 4 201 1.9E-78 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_08595 2216043961e1adac55d266da01dd18d4 148 SUPERFAMILY SSF52821 52 134 3.67E-23 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_08595 2216043961e1adac55d266da01dd18d4 148 Pfam PF00581 Rhodanese-like domain 62 135 2.5E-11 T 12-10-2018 IPR001763 Rhodanese-like domain R615_08595 2216043961e1adac55d266da01dd18d4 148 Gene3D G3DSA:3.40.250.10 63 141 6.4E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_08595 2216043961e1adac55d266da01dd18d4 148 SMART SM00450 48 144 3.3E-17 T 12-10-2018 IPR001763 Rhodanese-like domain R615_00765 6f6646a62dd0b61c78c5b0711720cb30 163 SUPERFAMILY SSF160246 10 65 1.28E-9 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 PIRSF PIRSF001259 2 371 5.4E-112 T 12-10-2018 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 6.6E-72 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 6.6E-81 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 Gene3D G3DSA:3.90.870.10 1 206 3.7E-86 T 12-10-2018 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.39 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 SUPERFAMILY SSF142695 204 369 2.22E-38 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 Pfam PF00925 GTP cyclohydrolase II 211 368 3.6E-28 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_14785 421ba32adb6d3e029fbba34f45f4bc8f 371 SUPERFAMILY SSF55821 2 202 1.56E-84 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily R615_10070 bd0e55591c425afdd092e6caa7b7a40c 362 SUPERFAMILY SSF53448 8 269 4.28E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_10070 bd0e55591c425afdd092e6caa7b7a40c 362 Gene3D G3DSA:3.90.550.10 3 242 3.5E-39 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_10070 bd0e55591c425afdd092e6caa7b7a40c 362 Pfam PF00535 Glycosyl transferase family 2 15 158 4.4E-29 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 R615_08090 c8c34f00b1e75124489e5b95433596e7 375 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 113 257 1.4E-31 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_08090 c8c34f00b1e75124489e5b95433596e7 375 SUPERFAMILY SSF58104 58 292 7.19E-47 T 12-10-2018 R615_08090 c8c34f00b1e75124489e5b95433596e7 375 Pfam PF13682 Chemoreceptor zinc-binding domain 268 333 2.8E-15 T 12-10-2018 IPR025991 Chemoreceptor zinc-binding domain R615_08090 c8c34f00b1e75124489e5b95433596e7 375 Gene3D G3DSA:1.10.287.950 23 277 5.0E-44 T 12-10-2018 R615_08090 c8c34f00b1e75124489e5b95433596e7 375 SMART SM00283 65 274 1.6E-21 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_13045 8d83511e4895f592c5a2c701bbc6dcca 1090 Gene3D G3DSA:2.120.10.80 293 481 5.6E-15 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 R615_13045 8d83511e4895f592c5a2c701bbc6dcca 1090 Gene3D G3DSA:2.120.10.80 482 672 7.1E-10 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 R615_13045 8d83511e4895f592c5a2c701bbc6dcca 1090 SUPERFAMILY SSF50965 155 422 1.03E-20 T 12-10-2018 IPR011043 Galactose oxidase/kelch, beta-propeller R615_13045 8d83511e4895f592c5a2c701bbc6dcca 1090 Gene3D G3DSA:2.120.10.80 116 292 2.9E-13 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 R615_13045 8d83511e4895f592c5a2c701bbc6dcca 1090 SUPERFAMILY SSF117281 354 564 9.94E-21 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 R615_13045 8d83511e4895f592c5a2c701bbc6dcca 1090 SUPERFAMILY SSF50965 548 654 1.83E-7 T 12-10-2018 IPR011043 Galactose oxidase/kelch, beta-propeller R615_01420 9059b7a9d75e3fc88efcbf449046f49d 134 SMART SM00028 88 121 290.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_01420 9059b7a9d75e3fc88efcbf449046f49d 134 SMART SM00028 54 87 0.031 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_01420 9059b7a9d75e3fc88efcbf449046f49d 134 Gene3D G3DSA:1.25.40.10 55 129 8.3E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_01420 9059b7a9d75e3fc88efcbf449046f49d 134 SUPERFAMILY SSF48452 53 123 9.07E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_01420 9059b7a9d75e3fc88efcbf449046f49d 134 Pfam PF14559 Tetratricopeptide repeat 65 114 2.8E-6 T 12-10-2018 R615_14350 d01215b7931871f5c9b99fff03796021 202 Gene3D G3DSA:3.90.950.10 6 197 5.0E-60 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like R615_14350 d01215b7931871f5c9b99fff03796021 202 Hamap MF_00528 Septum formation protein Maf [maf]. 7 195 28.771 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_14350 d01215b7931871f5c9b99fff03796021 202 SUPERFAMILY SSF52972 5 189 4.64E-57 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like R615_14350 d01215b7931871f5c9b99fff03796021 202 PIRSF PIRSF006305 1 197 2.3E-42 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_14350 d01215b7931871f5c9b99fff03796021 202 TIGRFAM TIGR00172 maf: septum formation protein Maf 7 187 4.8E-54 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_14350 d01215b7931871f5c9b99fff03796021 202 Pfam PF02545 Maf-like protein 7 190 1.1E-43 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 R615_10885 8b9ff1822dbedf45ef54b78c8b479ea2 206 PIRSF PIRSF035170 5 206 6.3E-52 T 12-10-2018 IPR009218 Predicted HD phosphohydrolase R615_10885 8b9ff1822dbedf45ef54b78c8b479ea2 206 Gene3D G3DSA:1.10.3210.10 21 181 6.4E-8 T 12-10-2018 R615_10885 8b9ff1822dbedf45ef54b78c8b479ea2 206 SUPERFAMILY SSF109604 29 202 4.29E-21 T 12-10-2018 R615_07200 7d7bec84c61d2c48d7a3cd0435ad2ef3 191 Pfam PF07437 YfaZ precursor 16 191 4.2E-17 T 12-10-2018 IPR009998 YfaZ R615_08615 730e9962e75a77cf0f57ac1bd7c1237c 149 Pfam PF00293 NUDIX domain 8 121 5.2E-16 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 R615_08615 730e9962e75a77cf0f57ac1bd7c1237c 149 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 R615_08615 730e9962e75a77cf0f57ac1bd7c1237c 149 Gene3D G3DSA:3.90.79.10 2 148 1.6E-40 T 12-10-2018 R615_08615 730e9962e75a77cf0f57ac1bd7c1237c 149 SUPERFAMILY SSF55811 5 145 2.03E-28 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 R615_08615 730e9962e75a77cf0f57ac1bd7c1237c 149 PRINTS PR00502 NUDIX hydrolase family signature 34 48 1.4E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_08615 730e9962e75a77cf0f57ac1bd7c1237c 149 PRINTS PR00502 NUDIX hydrolase family signature 48 63 1.4E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 R615_04685 9343a833516e716559c534248135880a 101 Pfam PF14090 Helix-turn-helix domain 7 63 3.3E-7 T 12-10-2018 R615_10180 1c674e7b205603f64e5b672cdc75997e 107 Pfam PF11804 Protein of unknown function (DUF3325) 10 99 6.7E-13 T 12-10-2018 IPR021762 Protein of unknown function DUF3325 R615_17195 379546bcce6b8b53f62ef4f260673029 371 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 34 355 7.5E-97 T 12-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX R615_00480 0cc061265b8fa0c6c56ef18ddeb75eb8 262 Gene3D G3DSA:3.40.50.1820 1 255 3.4E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00480 0cc061265b8fa0c6c56ef18ddeb75eb8 262 SUPERFAMILY SSF53474 6 254 8.79E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00480 0cc061265b8fa0c6c56ef18ddeb75eb8 262 Pfam PF12697 Alpha/beta hydrolase family 9 236 8.0E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_03435 b5220b75d213ef50d40a6eb29097a588 782 Pfam PF11906 Protein of unknown function (DUF3426) 634 777 5.4E-34 T 12-10-2018 IPR021834 Protein of unknown function DUF3426 R615_03435 b5220b75d213ef50d40a6eb29097a588 782 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 40 6.3E-15 T 12-10-2018 IPR011723 Zinc finger/thioredoxin putative R615_03435 b5220b75d213ef50d40a6eb29097a588 782 Pfam PF13719 zinc-ribbon domain 6 40 1.1E-10 T 12-10-2018 IPR011723 Zinc finger/thioredoxin putative R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 SUPERFAMILY SSF54862 99 357 2.72E-32 T 12-10-2018 R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 Pfam PF12801 4Fe-4S binding domain 91 125 7.0E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 349 468 1.8E-26 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 267 278 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 34 467 2.4E-168 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 Gene3D G3DSA:3.30.70.20 211 286 2.5E-5 T 12-10-2018 R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 Pfam PF13746 4Fe-4S dicluster domain 212 319 1.6E-47 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain R615_07720 abd3c1d6d9d371881a3337b7754e26c3 470 Gene3D G3DSA:2.60.40.10 350 468 2.2E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_10360 8de1af8f79bab6f835b9ae98597a1386 469 Gene3D G3DSA:3.40.50.1220 284 469 1.9E-79 T 12-10-2018 R615_10360 8de1af8f79bab6f835b9ae98597a1386 469 SUPERFAMILY SSF52467 294 468 2.56E-69 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily R615_10360 8de1af8f79bab6f835b9ae98597a1386 469 PIRSF PIRSF000204 1 468 3.0E-176 T 12-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 R615_10360 8de1af8f79bab6f835b9ae98597a1386 469 Pfam PF02233 NAD(P) transhydrogenase beta subunit 6 463 6.2E-178 T 12-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 R615_09230 619bf01205bce70048efbaab2b64dc2a 471 PIRSF PIRSF037714 6 471 4.1E-136 T 12-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein R615_09230 619bf01205bce70048efbaab2b64dc2a 471 Pfam PF01618 MotA/TolQ/ExbB proton channel family 344 449 4.7E-30 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_13750 1aec75038bf95555262eac59042e0bdb 426 Pfam PF13692 Glycosyl transferases group 1 211 347 2.2E-17 T 12-10-2018 R615_13750 1aec75038bf95555262eac59042e0bdb 426 SUPERFAMILY SSF53756 21 382 1.26E-19 T 12-10-2018 R615_13750 1aec75038bf95555262eac59042e0bdb 426 Gene3D G3DSA:3.40.50.2000 204 363 8.2E-10 T 12-10-2018 R615_12795 5c58405e4cbba9573d5e01b643e4dc51 334 PIRSF PIRSF005427 1 324 7.7E-84 T 12-10-2018 IPR005588 MucB/RseB R615_12795 5c58405e4cbba9573d5e01b643e4dc51 334 Pfam PF03888 MucB/RseB N-terminal domain 28 199 3.7E-56 T 12-10-2018 IPR033434 MucB/RseB, N-terminal R615_12795 5c58405e4cbba9573d5e01b643e4dc51 334 Gene3D G3DSA:2.50.20.10 26 202 2.9E-54 T 12-10-2018 R615_12795 5c58405e4cbba9573d5e01b643e4dc51 334 Pfam PF17188 MucB/RseB C-terminal domain 222 319 1.3E-23 T 12-10-2018 IPR033436 MucB/RseB, C-terminal R615_12795 5c58405e4cbba9573d5e01b643e4dc51 334 Gene3D G3DSA:3.30.200.100 223 322 4.4E-21 T 12-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily R615_09710 6fb1f793e429125d4c0ec7c7328defef 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 419 4.8E-85 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_09710 6fb1f793e429125d4c0ec7c7328defef 456 Pfam PF01554 MatE 17 176 1.4E-25 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_09710 6fb1f793e429125d4c0ec7c7328defef 456 Pfam PF01554 MatE 243 404 1.5E-28 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_09710 6fb1f793e429125d4c0ec7c7328defef 456 PIRSF PIRSF006603 3 454 2.0E-53 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_03565 7b32d05fc65969b84344f1fa8dffef70 469 Gene3D G3DSA:1.20.1250.20 257 467 8.7E-12 T 12-10-2018 R615_03565 7b32d05fc65969b84344f1fa8dffef70 469 SUPERFAMILY SSF103473 20 467 3.66E-30 T 12-10-2018 IPR036259 MFS transporter superfamily R615_03565 7b32d05fc65969b84344f1fa8dffef70 469 Pfam PF07690 Major Facilitator Superfamily 28 422 2.3E-15 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_03565 7b32d05fc65969b84344f1fa8dffef70 469 Gene3D G3DSA:1.20.1250.20 15 215 1.7E-12 T 12-10-2018 R615_16255 60dc200a5262546ef10639b921bb0724 409 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site R615_16255 60dc200a5262546ef10639b921bb0724 409 SUPERFAMILY SSF50465 313 408 8.92E-34 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal R615_16255 60dc200a5262546ef10639b921bb0724 409 SUPERFAMILY SSF50447 220 316 2.55E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily R615_16255 60dc200a5262546ef10639b921bb0724 409 SUPERFAMILY SSF52540 8 234 7.41E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16255 60dc200a5262546ef10639b921bb0724 409 Pfam PF00009 Elongation factor Tu GTP binding domain 12 216 4.2E-56 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 Gene3D G3DSA:2.40.30.10 221 349 4.6E-50 T 12-10-2018 R615_16255 60dc200a5262546ef10639b921bb0724 409 Gene3D G3DSA:2.40.30.10 353 408 7.6E-29 T 12-10-2018 R615_16255 60dc200a5262546ef10639b921bb0724 409 Hamap MF_00118_B Elongation factor Tu [tuf]. 3 409 57.582 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_16255 60dc200a5262546ef10639b921bb0724 409 Pfam PF03143 Elongation factor Tu C-terminal domain 313 407 5.8E-32 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal R615_16255 60dc200a5262546ef10639b921bb0724 409 Gene3D G3DSA:3.40.50.300 3 218 5.3E-68 T 12-10-2018 R615_16255 60dc200a5262546ef10639b921bb0724 409 PRINTS PR00315 GTP-binding elongation factor signature 16 29 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 PRINTS PR00315 GTP-binding elongation factor signature 80 90 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 PRINTS PR00315 GTP-binding elongation factor signature 60 68 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 PRINTS PR00315 GTP-binding elongation factor signature 96 107 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 PRINTS PR00315 GTP-binding elongation factor signature 133 142 1.6E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 Pfam PF03144 Elongation factor Tu domain 2 240 308 2.9E-15 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 144 2.3E-13 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 R615_16255 60dc200a5262546ef10639b921bb0724 409 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 4 408 6.9E-215 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 R615_00410 468ebfd39c8409395a7a567903321e4a 316 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 310 1.7E-84 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 R615_00410 468ebfd39c8409395a7a567903321e4a 316 SUPERFAMILY SSF56112 5 288 4.23E-63 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_00410 468ebfd39c8409395a7a567903321e4a 316 Gene3D G3DSA:3.90.1200.10 105 316 1.4E-66 T 12-10-2018 R615_00410 468ebfd39c8409395a7a567903321e4a 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 116.175 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 R615_00410 468ebfd39c8409395a7a567903321e4a 316 Gene3D G3DSA:3.30.200.20 1 102 2.7E-32 T 12-10-2018 R615_00410 468ebfd39c8409395a7a567903321e4a 316 Pfam PF01636 Phosphotransferase enzyme family 28 259 6.3E-29 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase R615_11290 c19436406733b8ce0311cd2e346dbe79 163 Gene3D G3DSA:3.30.530.20 2 162 4.5E-49 T 12-10-2018 IPR023393 START-like domain superfamily R615_11290 c19436406733b8ce0311cd2e346dbe79 163 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 24 159 4.6E-35 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like R615_11290 c19436406733b8ce0311cd2e346dbe79 163 SUPERFAMILY SSF55961 15 162 4.07E-48 T 12-10-2018 R615_05580 ad7ba852603768c28375004bbd298fcd 372 Pfam PF00487 Fatty acid desaturase 65 341 2.5E-31 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_12370 e06e5e7c7128ecf282a22cc8968a28d5 252 Gene3D G3DSA:3.60.15.10 4 243 5.9E-23 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_12370 e06e5e7c7128ecf282a22cc8968a28d5 252 SUPERFAMILY SSF56281 10 221 9.75E-23 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like R615_12370 e06e5e7c7128ecf282a22cc8968a28d5 252 Pfam PF12706 Beta-lactamase superfamily domain 38 218 3.0E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase R615_04195 632d30524d949a6824fa3f7d76bf5364 79 Gene3D G3DSA:3.40.630.30 1 79 2.3E-20 T 12-10-2018 R615_04195 632d30524d949a6824fa3f7d76bf5364 79 Pfam PF14542 GCN5-related N-acetyl-transferase 10 78 5.6E-18 T 12-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase R615_04195 632d30524d949a6824fa3f7d76bf5364 79 SUPERFAMILY SSF55729 2 77 6.8E-20 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_02845 869f1b9cb69be4b402f1b911d5eff055 155 Gene3D G3DSA:3.30.700.10 7 154 5.4E-18 T 12-10-2018 R615_02845 869f1b9cb69be4b402f1b911d5eff055 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 2.6E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02845 869f1b9cb69be4b402f1b911d5eff055 155 SUPERFAMILY SSF54523 7 133 1.49E-14 T 12-10-2018 R615_02845 869f1b9cb69be4b402f1b911d5eff055 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 6.3E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02845 869f1b9cb69be4b402f1b911d5eff055 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_14360 3790812475c65b2fb9ea00ba5783c818 293 Pfam PF11356 Type II secretion system protein C 21 153 9.3E-30 T 12-10-2018 IPR024961 Type II secretion system protein C, N-terminal R615_14360 3790812475c65b2fb9ea00ba5783c818 293 Gene3D G3DSA:2.30.42.10 197 288 3.8E-11 T 12-10-2018 R615_14360 3790812475c65b2fb9ea00ba5783c818 293 Gene3D G3DSA:2.30.30.830 87 153 2.6E-13 T 12-10-2018 R615_14360 3790812475c65b2fb9ea00ba5783c818 293 SUPERFAMILY SSF50156 210 285 9.2E-10 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 R615_14360 3790812475c65b2fb9ea00ba5783c818 293 SMART SM00228 213 280 0.0068 T 12-10-2018 IPR001478 PDZ domain GO:0005515 R615_06570 e3fb6fddd46bc13b2ae5f2f3531bfbda 513 SUPERFAMILY SSF161098 74 252 1.54E-13 T 12-10-2018 IPR035906 MetI-like superfamily R615_06570 e3fb6fddd46bc13b2ae5f2f3531bfbda 513 Gene3D G3DSA:1.10.3720.10 65 255 1.2E-15 T 12-10-2018 IPR035906 MetI-like superfamily R615_06570 e3fb6fddd46bc13b2ae5f2f3531bfbda 513 Gene3D G3DSA:1.10.3720.10 304 502 1.6E-10 T 12-10-2018 IPR035906 MetI-like superfamily R615_06570 e3fb6fddd46bc13b2ae5f2f3531bfbda 513 SUPERFAMILY SSF161098 309 493 7.03E-13 T 12-10-2018 IPR035906 MetI-like superfamily R615_17380 d4de78160a4f901da650f0a92e7c6a17 220 SUPERFAMILY SSF48695 89 205 5.44E-6 T 12-10-2018 IPR036280 Multiheme cytochrome superfamily R615_17380 d4de78160a4f901da650f0a92e7c6a17 220 Pfam PF09626 Dihaem cytochrome c 89 205 5.7E-38 T 12-10-2018 IPR018588 Dihaem cytochrome c R615_11000 0b3e7c3b099c5ed8854508cb8023f326 770 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 44 111 1.8E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_11000 0b3e7c3b099c5ed8854508cb8023f326 770 SUPERFAMILY SSF46626 44 115 3.49E-8 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_11000 0b3e7c3b099c5ed8854508cb8023f326 770 Gene3D G3DSA:1.10.760.10 43 122 3.2E-7 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_05940 795cd1fa5158636c7c2ca270ce549b8e 480 Pfam PF01458 Uncharacterized protein family (UPF0051) 219 451 2.0E-66 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 R615_05940 795cd1fa5158636c7c2ca270ce549b8e 480 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 14 471 6.9E-193 T 12-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 R615_05940 795cd1fa5158636c7c2ca270ce549b8e 480 SUPERFAMILY SSF101960 35 477 9.42E-140 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily R615_15945 6a1ebac8a5bc1e92fb3af4dfb9ca41d6 391 TIGRFAM TIGR00797 matE: MATE efflux family protein 1 362 1.4E-52 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_15945 6a1ebac8a5bc1e92fb3af4dfb9ca41d6 391 Pfam PF01554 MatE 1 121 7.6E-13 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_15945 6a1ebac8a5bc1e92fb3af4dfb9ca41d6 391 Pfam PF01554 MatE 196 349 9.0E-8 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_13140 247018dc7808f3bae5397596eca46185 287 Pfam PF12146 Serine aminopeptidase, S33 45 150 1.3E-11 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 R615_13140 247018dc7808f3bae5397596eca46185 287 SUPERFAMILY SSF53474 3 267 1.54E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_13140 247018dc7808f3bae5397596eca46185 287 PIRSF PIRSF037442 4 286 1.8E-88 T 12-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 R615_13140 247018dc7808f3bae5397596eca46185 287 Gene3D G3DSA:3.40.50.1820 2 269 1.9E-20 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_12375 7278b1865b15d70f63627a33d006cfea 218 Gene3D G3DSA:3.40.50.150 38 180 3.4E-23 T 12-10-2018 R615_12375 7278b1865b15d70f63627a33d006cfea 218 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 83 151 1.3E-14 T 12-10-2018 R615_12375 7278b1865b15d70f63627a33d006cfea 218 SUPERFAMILY SSF53335 61 175 5.58E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_10775 2ab86f39e31911b8a7a387c5908d9824 427 SUPERFAMILY SSF56954 14 415 1.44E-76 T 12-10-2018 R615_10775 2ab86f39e31911b8a7a387c5908d9824 427 Gene3D G3DSA:2.20.200.10 60 307 1.3E-89 T 12-10-2018 R615_10775 2ab86f39e31911b8a7a387c5908d9824 427 Gene3D G3DSA:1.20.1600.10 13 415 1.3E-89 T 12-10-2018 R615_10775 2ab86f39e31911b8a7a387c5908d9824 427 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 414 7.9E-63 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 R615_10775 2ab86f39e31911b8a7a387c5908d9824 427 Pfam PF02321 Outer membrane efflux protein 237 413 3.9E-22 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_10775 2ab86f39e31911b8a7a387c5908d9824 427 Pfam PF02321 Outer membrane efflux protein 23 208 9.4E-20 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_13285 ac09de9b11049487f88e0f6e105f981d 396 ProSitePatterns PS00216 Sugar transport proteins signature 1. 59 75 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 R615_13285 ac09de9b11049487f88e0f6e105f981d 396 Pfam PF07690 Major Facilitator Superfamily 9 350 1.8E-40 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_13285 ac09de9b11049487f88e0f6e105f981d 396 SUPERFAMILY SSF103473 7 391 4.71E-59 T 12-10-2018 IPR036259 MFS transporter superfamily R615_13285 ac09de9b11049487f88e0f6e105f981d 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 7 381 1.4E-80 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 R615_13285 ac09de9b11049487f88e0f6e105f981d 396 Gene3D G3DSA:1.20.1720.10 5 384 2.4E-98 T 12-10-2018 R615_13110 286b9e90b09b0066ef88599f093d85c1 84 Pfam PF01381 Helix-turn-helix 17 66 1.8E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_13110 286b9e90b09b0066ef88599f093d85c1 84 Gene3D G3DSA:1.10.260.40 1 74 6.5E-17 T 12-10-2018 R615_13110 286b9e90b09b0066ef88599f093d85c1 84 SUPERFAMILY SSF47413 4 70 7.78E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_13110 286b9e90b09b0066ef88599f093d85c1 84 SMART SM00530 13 68 8.4E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 R615_16510 e3ef92867ae776280a77a1eeafa080ac 103 Gene3D G3DSA:3.30.1200.10 2 102 7.7E-33 T 12-10-2018 IPR036591 YggU-like superfamily R615_16510 e3ef92867ae776280a77a1eeafa080ac 103 SMART SM01152 8 84 1.0E-37 T 12-10-2018 IPR003746 Protein of unknown function DUF167 R615_16510 e3ef92867ae776280a77a1eeafa080ac 103 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 12 82 1.3E-26 T 12-10-2018 IPR003746 Protein of unknown function DUF167 R615_16510 e3ef92867ae776280a77a1eeafa080ac 103 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 9 89 5.3E-22 T 12-10-2018 IPR005228 Conserved hypothetical protein CHP00251 R615_16510 e3ef92867ae776280a77a1eeafa080ac 103 Hamap MF_00634 UPF0235 protein YggU [yggU]. 8 94 20.164 T 12-10-2018 IPR003746 Protein of unknown function DUF167 R615_16510 e3ef92867ae776280a77a1eeafa080ac 103 SUPERFAMILY SSF69786 2 96 7.85E-31 T 12-10-2018 IPR036591 YggU-like superfamily R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 356 2.7E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 305 2.7E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 338 2.7E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 Gene3D G3DSA:1.10.287.130 138 192 2.3E-14 T 12-10-2018 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 Gene3D G3DSA:3.30.450.20 4 115 9.3E-19 T 12-10-2018 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 SUPERFAMILY SSF55785 9 103 1.92E-10 T 12-10-2018 IPR035965 PAS domain superfamily R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 SMART SM00091 6 74 4.9E-6 T 12-10-2018 IPR000014 PAS domain R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 Gene3D G3DSA:3.30.565.10 196 357 1.5E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 SUPERFAMILY SSF47384 125 193 6.08E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 Pfam PF00512 His Kinase A (phospho-acceptor) domain 137 191 6.4E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 239 358 1.5E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 Pfam PF00989 PAS fold 9 106 1.4E-10 T 12-10-2018 IPR013767 PAS fold GO:0006355 R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 SUPERFAMILY SSF55874 200 357 1.31E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 SMART SM00387 238 359 3.2E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase R615_02895 73c85c082a454cfe3fa06c2601e687b9 360 SMART SM00388 134 199 3.8E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 459 56.141 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Gene3D G3DSA:3.40.1190.10 91 318 3.5E-53 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 SUPERFAMILY SSF53244 316 455 1.24E-31 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Pfam PF01225 Mur ligase family, catalytic domain 3 101 3.5E-16 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Pfam PF08245 Mur ligase middle domain 108 296 3.6E-21 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3 454 8.2E-196 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 390 2.2E-8 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 SUPERFAMILY SSF53623 98 314 2.75E-48 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Gene3D G3DSA:3.90.190.20 319 458 2.4E-24 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 Gene3D G3DSA:3.40.50.720 1 90 3.5E-32 T 12-10-2018 R615_14075 48046167c7e37b9bcb4efad45e815ddc 462 SUPERFAMILY SSF51984 1 90 1.28E-21 T 12-10-2018 R615_00375 c96ed6c1e745ebad8c66255726093880 100 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 24 94 3.5E-14 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00375 c96ed6c1e745ebad8c66255726093880 100 SUPERFAMILY SSF46626 25 96 5.55E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_00375 c96ed6c1e745ebad8c66255726093880 100 Gene3D G3DSA:1.10.760.10 18 97 1.0E-28 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_00375 c96ed6c1e745ebad8c66255726093880 100 PRINTS PR00607 Class IE cytochrome C signature 41 51 7.5E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_00375 c96ed6c1e745ebad8c66255726093880 100 PRINTS PR00607 Class IE cytochrome C signature 84 95 7.5E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_00375 c96ed6c1e745ebad8c66255726093880 100 PRINTS PR00607 Class IE cytochrome C signature 30 41 7.5E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_00375 c96ed6c1e745ebad8c66255726093880 100 PRINTS PR00607 Class IE cytochrome C signature 69 81 7.5E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 R615_14485 f4103c8b1a00c99fcc962251d5d83533 170 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 9.3E-26 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_14485 f4103c8b1a00c99fcc962251d5d83533 170 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 3.5E-26 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_14485 f4103c8b1a00c99fcc962251d5d83533 170 Gene3D G3DSA:3.30.70.560 1 156 1.1E-34 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_14485 f4103c8b1a00c99fcc962251d5d83533 170 SUPERFAMILY SSF55083 1 153 3.66E-39 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_15110 b6792d0c00951e202cdda77cfed97563 156 SUPERFAMILY SSF101307 1 149 1.31E-41 T 12-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 R615_15110 b6792d0c00951e202cdda77cfed97563 156 PIRSF PIRSF006162 1 156 1.4E-48 T 12-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 R615_15110 b6792d0c00951e202cdda77cfed97563 156 Pfam PF04608 Phosphatidylglycerophosphatase A 6 150 4.9E-48 T 12-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 R615_03045 fe098fafd8e0bc44f9d242f9657f503c 236 Gene3D G3DSA:1.10.357.10 26 227 3.3E-53 T 12-10-2018 R615_03045 fe098fafd8e0bc44f9d242f9657f503c 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 75 1.2E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_03045 fe098fafd8e0bc44f9d242f9657f503c 236 SUPERFAMILY SSF46689 20 100 7.18E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_16925 8254e52754878fe51105d89414ca2e04 151 SUPERFAMILY SSF88697 1 149 1.63E-56 T 12-10-2018 IPR015947 PUA-like superfamily R615_16925 8254e52754878fe51105d89414ca2e04 151 Pfam PF01878 EVE domain 2 149 9.1E-49 T 12-10-2018 IPR002740 EVE domain R615_16925 8254e52754878fe51105d89414ca2e04 151 Gene3D G3DSA:3.10.590.10 1 151 3.1E-60 T 12-10-2018 R615_13830 c3736703292234f16b0b466fbdda3c66 401 Gene3D G3DSA:3.40.47.10 6 298 9.8E-133 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_13830 c3736703292234f16b0b466fbdda3c66 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 R615_13830 c3736703292234f16b0b466fbdda3c66 401 Gene3D G3DSA:3.40.47.10 125 396 9.8E-133 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_13830 c3736703292234f16b0b466fbdda3c66 401 SUPERFAMILY SSF53901 1 272 1.25E-58 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_13830 c3736703292234f16b0b466fbdda3c66 401 Pfam PF02803 Thiolase, C-terminal domain 279 400 9.2E-42 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 R615_13830 c3736703292234f16b0b466fbdda3c66 401 PIRSF PIRSF000429 1 401 9.2E-108 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_13830 c3736703292234f16b0b466fbdda3c66 401 Pfam PF00108 Thiolase, N-terminal domain 5 228 9.7E-45 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 R615_13830 c3736703292234f16b0b466fbdda3c66 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.9E-122 T 12-10-2018 IPR002155 Thiolase GO:0016747 R615_13830 c3736703292234f16b0b466fbdda3c66 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 R615_13830 c3736703292234f16b0b466fbdda3c66 401 SUPERFAMILY SSF53901 279 400 5.35E-41 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 R615_08450 472704c17e40a1a9d478d123f5127510 558 Gene3D G3DSA:3.30.413.10 409 557 4.2E-30 T 12-10-2018 R615_08450 472704c17e40a1a9d478d123f5127510 558 SUPERFAMILY SSF55124 253 422 3.27E-26 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_08450 472704c17e40a1a9d478d123f5127510 558 SUPERFAMILY SSF56014 120 284 1.07E-44 T 12-10-2018 R615_08450 472704c17e40a1a9d478d123f5127510 558 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 1.6E-41 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_08450 472704c17e40a1a9d478d123f5127510 558 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 110 6.0E-15 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_08450 472704c17e40a1a9d478d123f5127510 558 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 329 399 2.0E-15 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_08450 472704c17e40a1a9d478d123f5127510 558 SUPERFAMILY SSF55124 1 125 2.45E-27 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_08450 472704c17e40a1a9d478d123f5127510 558 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 413 553 1.5E-8 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 R615_08450 472704c17e40a1a9d478d123f5127510 558 SUPERFAMILY SSF56014 410 554 1.96E-36 T 12-10-2018 R615_08450 472704c17e40a1a9d478d123f5127510 558 Gene3D G3DSA:3.90.480.10 53 389 1.1E-74 T 12-10-2018 R615_08450 472704c17e40a1a9d478d123f5127510 558 Gene3D G3DSA:3.30.413.10 119 316 1.1E-74 T 12-10-2018 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 SUPERFAMILY SSF46557 3 77 5.75E-27 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 SUPERFAMILY SSF54534 82 156 4.19E-23 T 12-10-2018 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 3.5E-29 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 31.997 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 Gene3D G3DSA:3.10.50.30 76 158 1.8E-28 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 156 7.1E-27 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 Gene3D G3DSA:1.10.287.180 1 75 1.7E-29 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 PIRSF PIRSF006092 1 158 6.9E-47 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 R615_03975 defec544da3ef0cfd29e4f4801930dff 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.1E-55 T 12-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 R615_15615 7b46d3d0ef2d599f87fb63b9f4bf08b3 64 PIRSF PIRSF037225 1 64 1.2E-22 T 12-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 R615_15615 7b46d3d0ef2d599f87fb63b9f4bf08b3 64 Pfam PF14255 Cysteine-rich CPXCG 9 56 4.5E-21 T 12-10-2018 IPR025990 Cysteine-rich CPXCG protein R615_01025 11ced64dfad42ddac2a9d5269197f792 226 SUPERFAMILY SSF48498 83 166 6.67E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily R615_01025 11ced64dfad42ddac2a9d5269197f792 226 SUPERFAMILY SSF46689 5 79 1.74E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_01025 11ced64dfad42ddac2a9d5269197f792 226 Gene3D G3DSA:1.10.10.60 2 56 1.3E-5 T 12-10-2018 R615_01025 11ced64dfad42ddac2a9d5269197f792 226 Gene3D G3DSA:1.10.357.10 57 182 1.3E-12 T 12-10-2018 R615_00540 0fc37fd474dfded8aa74f1a74ae2bef1 442 Gene3D G3DSA:1.10.630.10 7 432 1.1E-41 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 R615_00540 0fc37fd474dfded8aa74f1a74ae2bef1 442 Pfam PF00067 Cytochrome P450 267 413 7.8E-10 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 R615_00540 0fc37fd474dfded8aa74f1a74ae2bef1 442 SUPERFAMILY SSF48264 23 415 3.41E-39 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 R615_15530 f40d992963c832d1817f16d75fd704cf 135 Gene3D G3DSA:3.30.420.270 62 130 2.3E-8 T 12-10-2018 R615_15530 f40d992963c832d1817f16d75fd704cf 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 133 2.2E-30 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_15770 d837a28d8d95eed2b9122b5ad830aa01 509 Pfam PF14224 Domain of unknown function (DUF4331) 26 502 3.4E-145 T 12-10-2018 IPR025566 Protein of unknown function DUF4331 R615_13800 1296c969235446a77f9cd8fb4112c43c 498 Gene3D G3DSA:3.50.50.60 2 244 2.9E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13800 1296c969235446a77f9cd8fb4112c43c 498 Gene3D G3DSA:3.50.50.60 311 426 7.4E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13800 1296c969235446a77f9cd8fb4112c43c 498 Pfam PF00743 Flavin-binding monooxygenase-like 82 347 6.5E-14 T 12-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 R615_13800 1296c969235446a77f9cd8fb4112c43c 498 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 57 4.6E-6 T 12-10-2018 R615_13800 1296c969235446a77f9cd8fb4112c43c 498 SUPERFAMILY SSF51905 150 344 6.91E-27 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_13800 1296c969235446a77f9cd8fb4112c43c 498 SUPERFAMILY SSF51905 4 215 2.35E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03835 9767a18db62d5a2cda4eb8a982e96b67 49 Gene3D G3DSA:4.10.860.20 2 49 9.6E-19 T 12-10-2018 R615_08710 0e05c651857021be691f8131072e2ae1 92 SUPERFAMILY SSF75169 13 91 1.6E-11 T 12-10-2018 IPR027396 DsrEFH-like R615_08710 0e05c651857021be691f8131072e2ae1 92 Pfam PF04077 DsrH like protein 11 88 1.7E-10 T 12-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 R615_08710 0e05c651857021be691f8131072e2ae1 92 Gene3D G3DSA:3.40.1260.10 1 92 5.9E-12 T 12-10-2018 IPR027396 DsrEFH-like R615_16575 59f267dab728cfd5c761aab41152e82e 189 SUPERFAMILY SSF46785 25 167 2.19E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_16575 59f267dab728cfd5c761aab41152e82e 189 Pfam PF01047 MarR family 59 117 2.7E-17 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_16575 59f267dab728cfd5c761aab41152e82e 189 SMART SM00347 52 152 1.0E-18 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_16575 59f267dab728cfd5c761aab41152e82e 189 Gene3D G3DSA:1.10.10.10 22 165 1.0E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16575 59f267dab728cfd5c761aab41152e82e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 92 1.0E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_16575 59f267dab728cfd5c761aab41152e82e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 128 1.0E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_16575 59f267dab728cfd5c761aab41152e82e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 108 1.0E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 SUPERFAMILY SSF51569 3 328 9.23E-107 T 12-10-2018 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 Gene3D G3DSA:3.20.20.70 1 354 9.7E-151 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 PIRSF PIRSF001359 1 329 6.2E-82 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 5.6E-95 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 2.6E-200 T 12-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 R615_15395 63cca7e577ded593b5b6c4c34cf267fb 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 4.1E-92 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 R615_00655 50f23902a1aad9127544597f91c26a87 205 Pfam PF07681 DoxX 27 111 9.0E-22 T 12-10-2018 IPR032808 DoxX family R615_05040 40ec3dd6bbd3f866b784bf14cf38dca6 1317 Pfam PF07196 Flagellin hook IN motif 162 197 3.6E-5 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 R615_05040 40ec3dd6bbd3f866b784bf14cf38dca6 1317 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 108 6.5E-19 T 12-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 R615_05040 40ec3dd6bbd3f866b784bf14cf38dca6 1317 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 242 406 4.4E-34 T 12-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 R615_05040 40ec3dd6bbd3f866b784bf14cf38dca6 1317 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 1227 1299 7.6E-7 T 12-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 R615_00435 c2db2c33eddc8262dc9abacb2a0a4315 213 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 19 201 5.6E-17 T 12-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 R615_00435 c2db2c33eddc8262dc9abacb2a0a4315 213 Pfam PF04973 Nicotinamide mononucleotide transporter 18 197 2.4E-43 T 12-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 R615_14835 885df9eaf761275df6eec80281f2ba69 284 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_14835 885df9eaf761275df6eec80281f2ba69 284 SUPERFAMILY SSF51735 1 275 9.74E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_14835 885df9eaf761275df6eec80281f2ba69 284 Gene3D G3DSA:3.40.50.720 1 281 2.7E-70 T 12-10-2018 R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.4E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 Pfam PF00106 short chain dehydrogenase 7 199 2.0E-51 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 5.8E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.8E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14835 885df9eaf761275df6eec80281f2ba69 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.8E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 253 3.8E-62 T 12-10-2018 R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 SUPERFAMILY SSF51735 11 255 7.28E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 5.5E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 5.5E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 5.5E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 5.5E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 5.5E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 5.5E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 Gene3D G3DSA:3.40.50.720 2 255 1.1E-76 T 12-10-2018 R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 3.7E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 3.7E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_00220 8b2a6e644e7167d62b356e7c16e3ec9f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.7E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 166 190 2.3E-5 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 2.3E-5 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 9.4E-5 T 12-10-2018 R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 9.4E-5 T 12-10-2018 R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 7 222 9.5E-14 T 12-10-2018 R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 SUPERFAMILY SSF51905 4 408 4.58E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 Gene3D G3DSA:3.50.50.60 299 483 3.2E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14845 878b825fbd5c36e3313a0da3330d03ae 485 Gene3D G3DSA:3.50.50.60 1 233 7.1E-60 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03055 020d6c06801ee687f358854a67fad055 375 Pfam PF01266 FAD dependent oxidoreductase 7 370 1.8E-61 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 R615_03055 020d6c06801ee687f358854a67fad055 375 SUPERFAMILY SSF51905 5 372 1.73E-37 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03055 020d6c06801ee687f358854a67fad055 375 Gene3D G3DSA:3.30.9.10 87 326 2.5E-117 T 12-10-2018 R615_03055 020d6c06801ee687f358854a67fad055 375 Gene3D G3DSA:3.50.50.60 7 364 2.5E-117 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_01655 a7d75e359c24fd1f3ab59ca9af40edbc 135 Pfam PF04134 Protein of unknown function, DUF393 6 115 1.3E-26 T 12-10-2018 IPR007263 Protein of unknown function DUF393 R615_03460 e8d464859ef8e0dbe43d2b2de1a91b94 146 Gene3D G3DSA:2.60.40.1890 34 145 5.1E-31 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily R615_03460 e8d464859ef8e0dbe43d2b2de1a91b94 146 SUPERFAMILY SSF110087 7 142 3.53E-38 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily R615_03460 e8d464859ef8e0dbe43d2b2de1a91b94 146 Pfam PF04314 Copper chaperone PCu(A)C 32 133 7.5E-30 T 12-10-2018 IPR007410 Copper chaperone PCuAC R615_01675 1f89238c041e055e0d60625530e55e96 868 SUPERFAMILY SSF56112 110 383 5.53E-56 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_01675 1f89238c041e055e0d60625530e55e96 868 SUPERFAMILY SSF56436 701 865 4.47E-20 T 12-10-2018 IPR016187 C-type lectin fold R615_01675 1f89238c041e055e0d60625530e55e96 868 Pfam PF03781 Sulfatase-modifying factor enzyme 1 724 847 2.4E-13 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 R615_01675 1f89238c041e055e0d60625530e55e96 868 Gene3D G3DSA:1.10.510.10 200 380 4.7E-33 T 12-10-2018 R615_01675 1f89238c041e055e0d60625530e55e96 868 Pfam PF00069 Protein kinase domain 114 355 1.7E-42 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 R615_01675 1f89238c041e055e0d60625530e55e96 868 Gene3D G3DSA:3.30.200.20 102 198 1.9E-23 T 12-10-2018 R615_01675 1f89238c041e055e0d60625530e55e96 868 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 239 251 - T 12-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 R615_01675 1f89238c041e055e0d60625530e55e96 868 Gene3D G3DSA:3.90.1580.10 699 865 2.3E-12 T 12-10-2018 R615_01675 1f89238c041e055e0d60625530e55e96 868 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 119 148 - T 12-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 SUPERFAMILY SSF47203 283 470 2.58E-44 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 268 5.7E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Gene3D G3DSA:1.20.140.10 278 445 2.2E-98 T 12-10-2018 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Gene3D G3DSA:1.10.540.10 72 161 2.2E-98 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 SUPERFAMILY SSF56645 39 276 3.8E-60 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Gene3D G3DSA:2.40.110.10 162 277 2.2E-98 T 12-10-2018 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 34 1.6E-15 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 278 447 5.5E-22 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 47 159 1.2E-15 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 R615_03665 b43d31eae13402bcc89ad9a725819fd0 589 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 585 5.7E-34 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain R615_12775 859679d674d3641d610ca0381fc312df 121 Pfam PF16137 Domain of unknown function (DUF4845) 30 113 1.7E-16 T 12-10-2018 IPR032314 Protein of unknown function DUF4845 R615_09215 412e2becb8fe211d72864ada087dc612 208 PRINTS PR01374 Gram-negative bacterial tonB protein signature 124 145 1.8E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_09215 412e2becb8fe211d72864ada087dc612 208 PRINTS PR01374 Gram-negative bacterial tonB protein signature 164 181 1.8E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_09215 412e2becb8fe211d72864ada087dc612 208 PRINTS PR01374 Gram-negative bacterial tonB protein signature 145 163 1.8E-12 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 R615_09215 412e2becb8fe211d72864ada087dc612 208 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 130 204 8.5E-19 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 R615_09215 412e2becb8fe211d72864ada087dc612 208 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 131 204 4.6E-15 T 12-10-2018 IPR006260 TonB/TolA, C-terminal R615_09215 412e2becb8fe211d72864ada087dc612 208 Gene3D G3DSA:3.30.1150.10 112 205 2.1E-22 T 12-10-2018 R615_09215 412e2becb8fe211d72864ada087dc612 208 SUPERFAMILY SSF74653 121 204 7.46E-24 T 12-10-2018 R615_16520 97eb40ffa99d8f80d86ac8be1fc20bac 200 Pfam PF07021 Methionine biosynthesis protein MetW 5 197 3.5E-83 T 12-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 R615_16520 97eb40ffa99d8f80d86ac8be1fc20bac 200 Gene3D G3DSA:3.40.50.150 7 189 1.3E-23 T 12-10-2018 R615_16520 97eb40ffa99d8f80d86ac8be1fc20bac 200 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 5 197 1.4E-83 T 12-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 R615_16520 97eb40ffa99d8f80d86ac8be1fc20bac 200 SUPERFAMILY SSF53335 7 186 7.34E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_09210 92728540c072d07855374bf7ebf59970 414 SMART SM00028 151 184 45.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 SMART SM00028 69 102 27.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 SMART SM00028 190 223 190.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 SMART SM00028 369 402 51.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 SUPERFAMILY SSF48452 219 412 4.09E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 Gene3D G3DSA:1.25.40.10 19 193 1.6E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 Gene3D G3DSA:1.25.40.10 194 412 4.5E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09210 92728540c072d07855374bf7ebf59970 414 SUPERFAMILY SSF48452 114 245 2.09E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_08460 5e282e5dfa9c240c0c5278b2f07af139 459 PIRSF PIRSF006603 15 459 1.8E-64 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_08460 5e282e5dfa9c240c0c5278b2f07af139 459 Pfam PF01554 MatE 29 188 1.0E-25 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_08460 5e282e5dfa9c240c0c5278b2f07af139 459 Pfam PF01554 MatE 260 418 7.8E-18 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_08460 5e282e5dfa9c240c0c5278b2f07af139 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 29 431 6.4E-61 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_07860 75d281682fef038c4f1843510c6d4874 152 SUPERFAMILY SSF54197 10 133 3.19E-32 T 12-10-2018 IPR036265 HIT-like superfamily R615_07860 75d281682fef038c4f1843510c6d4874 152 Gene3D G3DSA:3.30.428.10 1 142 1.5E-40 T 12-10-2018 IPR036265 HIT-like superfamily R615_07860 75d281682fef038c4f1843510c6d4874 152 PIRSF PIRSF000714 1 141 1.3E-49 T 12-10-2018 IPR026026 Histidine triad hydrolase, Hint-type R615_07860 75d281682fef038c4f1843510c6d4874 152 Pfam PF01230 HIT domain 10 97 8.1E-13 T 12-10-2018 IPR001310 Histidine triad (HIT) protein R615_14100 30bf6da4d10dda380fff1ffbfb5d38b8 283 Gene3D G3DSA:3.40.50.2300 106 239 4.9E-9 T 12-10-2018 R615_03305 664251d57147b64e07700ad2ac14eb45 315 Pfam PF02401 LytB protein 3 283 4.3E-96 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 R615_03305 664251d57147b64e07700ad2ac14eb45 315 Gene3D G3DSA:3.40.1010.20 6 283 7.1E-115 T 12-10-2018 R615_03305 664251d57147b64e07700ad2ac14eb45 315 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.623 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 R615_03305 664251d57147b64e07700ad2ac14eb45 315 Gene3D G3DSA:3.40.50.11270 12 96 7.1E-115 T 12-10-2018 R615_03305 664251d57147b64e07700ad2ac14eb45 315 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 1.9E-102 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 R615_03305 664251d57147b64e07700ad2ac14eb45 315 Gene3D G3DSA:3.40.1010.20 97 197 7.1E-115 T 12-10-2018 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 Pfam PF13091 PLD-like domain 127 245 2.1E-13 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 Pfam PF13091 PLD-like domain 311 430 5.3E-29 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 Gene3D G3DSA:3.30.870.10 291 463 2.2E-30 T 12-10-2018 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 SUPERFAMILY SSF56024 261 451 2.09E-43 T 12-10-2018 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 Pfam PF13396 Phospholipase_D-nuclease N-terminal 18 56 1.6E-6 T 12-10-2018 IPR027379 Cardiolipin synthase N-terminal R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 18 464 3.4E-108 T 12-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 SUPERFAMILY SSF56024 105 298 3.92E-44 T 12-10-2018 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 Gene3D G3DSA:3.30.870.10 106 283 5.1E-42 T 12-10-2018 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 SMART SM00155 208 235 4.4E-4 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 R615_07570 8284c36444fa9cd32e6ab6a2e54d3588 465 SMART SM00155 382 409 8.7E-8 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 R615_00710 87f9b80d5fbcb99d489647e56899cd83 458 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 448 1.5E-89 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit R615_00710 87f9b80d5fbcb99d489647e56899cd83 458 PIRSF PIRSF006066 4 458 1.1E-67 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 R615_00710 87f9b80d5fbcb99d489647e56899cd83 458 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 453 3.6E-98 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 R615_15005 8ca12a6eab6081f69ff5e6e8238d7852 335 Gene3D G3DSA:3.20.20.30 4 331 3.3E-85 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 R615_15005 8ca12a6eab6081f69ff5e6e8238d7852 335 SUPERFAMILY SSF51679 7 328 1.44E-76 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 R615_15005 8ca12a6eab6081f69ff5e6e8238d7852 335 Pfam PF00296 Luciferase-like monooxygenase 21 299 2.7E-36 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 R615_15005 8ca12a6eab6081f69ff5e6e8238d7852 335 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 329 1.8E-117 T 12-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 R615_10080 98445fb6ef044566ba7a664a660b8bfc 260 SUPERFAMILY SSF48317 14 200 1.05E-26 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily R615_10080 98445fb6ef044566ba7a664a660b8bfc 260 SMART SM00014 75 186 8.1E-6 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase R615_10080 98445fb6ef044566ba7a664a660b8bfc 260 Gene3D G3DSA:1.20.144.10 110 205 4.7E-16 T 12-10-2018 R615_10080 98445fb6ef044566ba7a664a660b8bfc 260 Pfam PF01569 PAP2 superfamily 80 191 5.8E-18 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase R615_13405 3d69fcd4420475fa650896a29468028f 386 Pfam PF01098 Cell cycle protein 13 372 1.2E-96 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13405 3d69fcd4420475fa650896a29468028f 386 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 329 353 - T 12-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13405 3d69fcd4420475fa650896a29468028f 386 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 14 370 1.3E-116 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13405 3d69fcd4420475fa650896a29468028f 386 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 11 379 35.751 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_14475 a2a431fdd2015a7f01da1c86c120a4cc 543 Pfam PF13729 F plasmid transfer operon, TraF, protein 53 137 5.6E-9 T 12-10-2018 IPR032811 Putative conjugal transfer protein TraF-related R615_14475 a2a431fdd2015a7f01da1c86c120a4cc 543 Pfam PF13729 F plasmid transfer operon, TraF, protein 146 459 1.2E-41 T 12-10-2018 IPR032811 Putative conjugal transfer protein TraF-related R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 3.5E-36 T 12-10-2018 R615_15205 9719711d138713dfb7328a343b10bd61 936 Pfam PF00361 Proton-conducting membrane transporter 126 402 2.7E-66 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_15205 9719711d138713dfb7328a343b10bd61 936 Pfam PF13244 Domain of unknown function (DUF4040) 609 674 2.3E-18 T 12-10-2018 IPR025383 Domain of unknown function DUF4040 R615_15205 9719711d138713dfb7328a343b10bd61 936 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 790 911 6.0E-34 T 12-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein R615_15205 9719711d138713dfb7328a343b10bd61 936 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 60 113 5.3E-9 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 R615_11555 049e8c2543bb75d9db910a1100feb94b 423 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 82 412 7.6E-25 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 R615_11555 049e8c2543bb75d9db910a1100feb94b 423 SUPERFAMILY SSF51695 78 415 4.45E-64 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 R615_11555 049e8c2543bb75d9db910a1100feb94b 423 Gene3D G3DSA:3.20.20.190 76 418 1.3E-40 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 R615_04665 764a59e31a3b93d7d06315d29640277d 612 Pfam PF01420 Type I restriction modification DNA specificity domain 157 294 2.4E-14 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 R615_04665 764a59e31a3b93d7d06315d29640277d 612 Pfam PF01420 Type I restriction modification DNA specificity domain 414 593 5.2E-12 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 R615_04665 764a59e31a3b93d7d06315d29640277d 612 SUPERFAMILY SSF116734 114 376 7.19E-32 T 12-10-2018 R615_04665 764a59e31a3b93d7d06315d29640277d 612 Gene3D G3DSA:3.90.220.20 395 612 6.3E-34 T 12-10-2018 R615_04665 764a59e31a3b93d7d06315d29640277d 612 Gene3D G3DSA:3.90.220.20 109 311 1.7E-23 T 12-10-2018 R615_04665 764a59e31a3b93d7d06315d29640277d 612 SUPERFAMILY SSF116734 398 607 5.72E-34 T 12-10-2018 R615_14685 69d395f7a760ef764ecc79bfa1ef3a37 161 SUPERFAMILY SSF142433 5 159 6.8E-53 T 12-10-2018 IPR036653 CinA-like, C-terminal R615_14685 69d395f7a760ef764ecc79bfa1ef3a37 161 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 12 156 1.0E-50 T 12-10-2018 IPR008136 CinA, C-terminal R615_14685 69d395f7a760ef764ecc79bfa1ef3a37 161 Gene3D G3DSA:3.90.950.20 1 159 7.4E-58 T 12-10-2018 IPR036653 CinA-like, C-terminal R615_14685 69d395f7a760ef764ecc79bfa1ef3a37 161 Pfam PF02464 Competence-damaged protein 11 156 2.7E-54 T 12-10-2018 IPR008136 CinA, C-terminal R615_05300 392673e9d189499339b6e88b62c45bcc 124 SUPERFAMILY SSF161084 3 121 8.11E-25 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily R615_05300 392673e9d189499339b6e88b62c45bcc 124 Pfam PF01124 MAPEG family 4 122 2.5E-24 T 12-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein R615_05300 392673e9d189499339b6e88b62c45bcc 124 Gene3D G3DSA:1.20.120.550 2 124 1.0E-19 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily R615_05790 83688c2ae34bbd7ecfb1b081f737a564 238 Pfam PF00849 RNA pseudouridylate synthase 33 187 3.8E-26 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_05790 83688c2ae34bbd7ecfb1b081f737a564 238 SUPERFAMILY SSF55120 25 231 9.28E-52 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_05790 83688c2ae34bbd7ecfb1b081f737a564 238 Gene3D G3DSA:3.30.2350.10 18 235 7.9E-58 T 12-10-2018 R615_05175 20bbf825fbaad28459784c9c672abf22 111 Gene3D G3DSA:1.20.120.160 1 110 4.2E-22 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05175 20bbf825fbaad28459784c9c672abf22 111 Pfam PF01627 Hpt domain 23 103 8.2E-9 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 R615_05175 20bbf825fbaad28459784c9c672abf22 111 SUPERFAMILY SSF47226 2 109 1.83E-21 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_05130 2b5ff2b8b7b9dbe48e1731e5552ea09d 120 SUPERFAMILY SSF52172 1 120 7.68E-40 T 12-10-2018 IPR011006 CheY-like superfamily R615_05130 2b5ff2b8b7b9dbe48e1731e5552ea09d 120 Gene3D G3DSA:3.40.50.12740 2 120 5.0E-39 T 12-10-2018 R615_05130 2b5ff2b8b7b9dbe48e1731e5552ea09d 120 Pfam PF00072 Response regulator receiver domain 4 115 2.2E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05130 2b5ff2b8b7b9dbe48e1731e5552ea09d 120 SMART SM00448 2 115 1.2E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_11125 949a67ab2e8d6601e0c48040c662338c 163 SUPERFAMILY SSF103088 40 159 1.1E-23 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_11125 949a67ab2e8d6601e0c48040c662338c 163 Pfam PF00691 OmpA family 64 142 1.1E-14 T 12-10-2018 IPR006665 OmpA-like domain R615_11125 949a67ab2e8d6601e0c48040c662338c 163 PRINTS PR01021 OMPA domain signature 65 87 2.7E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_11125 949a67ab2e8d6601e0c48040c662338c 163 PRINTS PR01021 OMPA domain signature 95 110 2.7E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_11125 949a67ab2e8d6601e0c48040c662338c 163 PRINTS PR01021 OMPA domain signature 110 126 2.7E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 R615_11125 949a67ab2e8d6601e0c48040c662338c 163 Gene3D G3DSA:3.30.1330.60 38 160 6.0E-22 T 12-10-2018 IPR036737 OmpA-like domain superfamily R615_14460 9c5db78107c680e40e5b37ffd3ea0329 396 Gene3D G3DSA:2.40.10.410 311 395 1.7E-8 T 12-10-2018 IPR038165 FlgT, C-terminal domain superfamily R615_14460 9c5db78107c680e40e5b37ffd3ea0329 396 Pfam PF16539 Flagellar assembly protein T, middle domain 114 275 1.6E-43 T 12-10-2018 IPR032386 Flagellar assembly protein T, middle domain R615_14460 9c5db78107c680e40e5b37ffd3ea0329 396 Gene3D G3DSA:3.30.1660.40 23 111 6.8E-13 T 12-10-2018 IPR038180 FlgT, N-terminal domain superfamily R615_14460 9c5db78107c680e40e5b37ffd3ea0329 396 Pfam PF16538 Flagellar assembly protein T, C-terminal domain 319 394 6.4E-22 T 12-10-2018 IPR032388 Flagellar assembly protein T, C-terminal R615_14460 9c5db78107c680e40e5b37ffd3ea0329 396 Gene3D G3DSA:3.40.50.10610 113 309 4.2E-46 T 12-10-2018 R615_14460 9c5db78107c680e40e5b37ffd3ea0329 396 Pfam PF16548 Flagellar assembly protein T, N-terminal domain 23 107 1.4E-19 T 12-10-2018 IPR032370 Flagellar assembly protein T, N-terminal R615_16605 5491ebba914a0618d88d032d70ad3d79 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 400 2.7E-51 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_16605 5491ebba914a0618d88d032d70ad3d79 458 Pfam PF01554 MatE 20 180 3.1E-24 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_16605 5491ebba914a0618d88d032d70ad3d79 458 Pfam PF01554 MatE 244 401 1.5E-23 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_16605 5491ebba914a0618d88d032d70ad3d79 458 PIRSF PIRSF006603 2 443 1.5E-90 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_10195 4ca49b92391629d2476dd73985d76ded 205 Pfam PF03861 ANTAR domain 145 197 2.9E-16 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 R615_10195 4ca49b92391629d2476dd73985d76ded 205 Gene3D G3DSA:1.10.10.10 145 203 6.4E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_10195 4ca49b92391629d2476dd73985d76ded 205 SUPERFAMILY SSF52172 13 197 1.42E-53 T 12-10-2018 IPR011006 CheY-like superfamily R615_10195 4ca49b92391629d2476dd73985d76ded 205 Pfam PF00072 Response regulator receiver domain 17 122 6.5E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_10195 4ca49b92391629d2476dd73985d76ded 205 PIRSF PIRSF036382 6 204 8.2E-66 T 12-10-2018 IPR008327 Signal transduction response regulator, antiterminator R615_10195 4ca49b92391629d2476dd73985d76ded 205 SMART SM00448 15 126 8.1E-13 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_10195 4ca49b92391629d2476dd73985d76ded 205 SMART SM01012 142 197 6.0E-20 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 R615_10195 4ca49b92391629d2476dd73985d76ded 205 Gene3D G3DSA:3.40.50.2300 6 143 6.0E-24 T 12-10-2018 R615_04325 1c4239aa3dfc1335c031fe2b7cc45330 160 Pfam PF01936 NYN domain 4 151 1.9E-39 T 12-10-2018 IPR021139 NYN domain, limkain-b1-type R615_04325 1c4239aa3dfc1335c031fe2b7cc45330 160 Gene3D G3DSA:3.40.50.1010 1 157 7.1E-51 T 12-10-2018 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 SUPERFAMILY SSF81340 6 416 8.5E-88 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 Gene3D G3DSA:1.10.3080.10 20 427 2.9E-88 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 Pfam PF00654 Voltage gated chloride channel 74 411 5.1E-78 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 PRINTS PR00762 Chloride channel signature 362 378 2.4E-20 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 PRINTS PR00762 Chloride channel signature 167 186 2.4E-20 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 PRINTS PR00762 Chloride channel signature 380 399 2.4E-20 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 R615_01445 69affb5c6bd3e6b3d62436458355e55d 579 PRINTS PR00762 Chloride channel signature 116 135 2.4E-20 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 R615_11590 247315b9689e8a05328b5b217364d4e4 94 Pfam PF13670 Peptidase propeptide and YPEB domain 5 92 9.1E-15 T 12-10-2018 IPR025711 PepSY domain R615_00210 0b4be8febe608ba0ae32ba31db0341a7 367 Gene3D G3DSA:3.30.200.20 17 124 7.1E-30 T 12-10-2018 R615_00210 0b4be8febe608ba0ae32ba31db0341a7 367 SUPERFAMILY SSF56112 18 344 6.96E-59 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily R615_00210 0b4be8febe608ba0ae32ba31db0341a7 367 Pfam PF01636 Phosphotransferase enzyme family 39 276 5.3E-43 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase R615_00210 0b4be8febe608ba0ae32ba31db0341a7 367 Gene3D G3DSA:3.90.1200.10 132 361 9.5E-66 T 12-10-2018 R615_06745 2de77455a6f10c04557ac3bafb06f294 119 SUPERFAMILY SSF46955 17 117 1.69E-19 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_06745 2de77455a6f10c04557ac3bafb06f294 119 SMART SM00422 19 89 1.5E-7 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_06745 2de77455a6f10c04557ac3bafb06f294 119 Pfam PF13411 MerR HTH family regulatory protein 19 88 2.2E-21 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_06745 2de77455a6f10c04557ac3bafb06f294 119 Gene3D G3DSA:1.10.1660.10 13 88 3.5E-22 T 12-10-2018 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 353 35.986 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 Gene3D G3DSA:3.40.50.2000 159 337 3.6E-116 T 12-10-2018 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 142 1.1E-40 T 12-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 181 344 1.2E-41 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 Gene3D G3DSA:3.40.50.2000 6 343 3.6E-116 T 12-10-2018 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 SUPERFAMILY SSF53756 4 354 7.39E-118 T 12-10-2018 R615_13400 93be0a066454b9545d0e5c3a2f9c0f3e 356 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 3 349 1.3E-106 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 R615_13115 44d0b5e35786d3de120fbb5b10f1d942 331 SUPERFAMILY SSF81901 36 156 3.01E-14 T 12-10-2018 R615_13115 44d0b5e35786d3de120fbb5b10f1d942 331 Gene3D G3DSA:1.25.40.10 25 163 2.8E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 2.0E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 2.0E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 SUPERFAMILY SSF52317 10 206 1.13E-27 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 Pfam PF12833 Helix-turn-helix domain 252 330 1.2E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 Gene3D G3DSA:3.40.50.880 9 214 1.1E-36 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 SMART SM00342 246 329 6.8E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 SUPERFAMILY SSF46689 282 334 1.48E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 SUPERFAMILY SSF46689 230 280 9.41E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_07790 77eae14e26ef0d6fc557b589c160ab98 346 Gene3D G3DSA:1.10.10.60 230 337 6.7E-28 T 12-10-2018 R615_17290 3e07ee4a84a6b664d59255e971ae39ae 481 ProSitePatterns PS00455 Putative AMP-binding domain signature. 144 155 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_17290 3e07ee4a84a6b664d59255e971ae39ae 481 SUPERFAMILY SSF56801 8 479 4.58E-62 T 12-10-2018 R615_17290 3e07ee4a84a6b664d59255e971ae39ae 481 Gene3D G3DSA:3.40.50.12780 5 380 4.7E-42 T 12-10-2018 R615_17290 3e07ee4a84a6b664d59255e971ae39ae 481 Gene3D G3DSA:3.30.300.30 381 479 4.6E-9 T 12-10-2018 R615_17290 3e07ee4a84a6b664d59255e971ae39ae 481 Pfam PF00501 AMP-binding enzyme 13 384 3.1E-34 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_06655 31962dfb76d5ca7ed67c8b7e1d7232b3 504 Pfam PF02321 Outer membrane efflux protein 318 488 6.3E-17 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_06655 31962dfb76d5ca7ed67c8b7e1d7232b3 504 Pfam PF02321 Outer membrane efflux protein 87 287 6.2E-13 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_06655 31962dfb76d5ca7ed67c8b7e1d7232b3 504 Gene3D G3DSA:1.20.1600.10 80 490 1.2E-33 T 12-10-2018 R615_06655 31962dfb76d5ca7ed67c8b7e1d7232b3 504 SUPERFAMILY SSF56954 11 489 7.24E-30 T 12-10-2018 R615_13185 7e172fd436db9023d1fa31f99f47e369 351 Pfam PF03747 ADP-ribosylglycohydrolase 51 325 1.8E-67 T 12-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 R615_13185 7e172fd436db9023d1fa31f99f47e369 351 SUPERFAMILY SSF101478 45 335 2.09E-71 T 12-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily R615_13185 7e172fd436db9023d1fa31f99f47e369 351 Gene3D G3DSA:1.10.4080.10 42 349 1.0E-93 T 12-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 Gene3D G3DSA:3.40.50.10490 9 219 1.4E-91 T 12-10-2018 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.455 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.7E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.7E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.7E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.7E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.7E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.7E-35 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 1.1E-105 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 Gene3D G3DSA:1.10.287.610 103 150 1.4E-91 T 12-10-2018 R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 SUPERFAMILY SSF52313 6 227 2.35E-94 T 12-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily R615_05460 2ccc299a069a2de9ac77cf6b964f6c47 248 Pfam PF00318 Ribosomal protein S2 9 224 7.2E-96 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_04015 0b7e954ba9a5442e0d2ac501446c9fb0 280 Pfam PF00809 Pterin binding enzyme 18 259 9.6E-86 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_04015 0b7e954ba9a5442e0d2ac501446c9fb0 280 SUPERFAMILY SSF51717 3 276 4.58E-100 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_04015 0b7e954ba9a5442e0d2ac501446c9fb0 280 Gene3D G3DSA:3.20.20.20 1 276 4.0E-109 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_04015 0b7e954ba9a5442e0d2ac501446c9fb0 280 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 273 2.9E-99 T 12-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 R615_04015 0b7e954ba9a5442e0d2ac501446c9fb0 280 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_04015 0b7e954ba9a5442e0d2ac501446c9fb0 280 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 R615_14235 2b873f4246134e5b17aa8c7a86b10915 637 Pfam PF06980 Protein of unknown function (DUF1302) 30 637 1.1E-191 T 12-10-2018 IPR010727 Protein of unknown function DUF1302 R615_02360 2821c3130299625b434a4246677f684a 372 SUPERFAMILY SSF56935 15 372 7.02E-24 T 12-10-2018 R615_05735 04024789a7208d48c0774dc493e99cb8 86 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 83 4.0E-9 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family R615_05735 04024789a7208d48c0774dc493e99cb8 86 Gene3D G3DSA:3.30.2310.20 2 86 5.1E-18 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_05735 04024789a7208d48c0774dc493e99cb8 86 SUPERFAMILY SSF143011 1 83 3.27E-19 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 235 16.573 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 Gene3D G3DSA:3.30.420.40 6 227 1.1E-49 T 12-10-2018 R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 SUPERFAMILY SSF53067 4 105 1.17E-14 T 12-10-2018 R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 4 230 2.7E-30 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 Gene3D G3DSA:3.30.420.490 111 220 1.1E-49 T 12-10-2018 R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 Pfam PF03309 Type III pantothenate kinase 4 192 1.3E-37 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 R615_16290 57a7d1a8f71df6b52f61e476de0858d5 237 SUPERFAMILY SSF53067 110 228 1.64E-23 T 12-10-2018 R615_05585 0b4553d183f378746f3e3dc9846b3aab 366 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 37 311 2.7E-49 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 R615_05585 0b4553d183f378746f3e3dc9846b3aab 366 Gene3D G3DSA:3.40.50.2300 140 356 2.2E-130 T 12-10-2018 R615_05585 0b4553d183f378746f3e3dc9846b3aab 366 Gene3D G3DSA:3.40.50.2300 37 293 2.2E-130 T 12-10-2018 R615_04255 0dee1fa71aa29ecc53261f6fa75b423a 254 Gene3D G3DSA:3.40.50.300 10 254 4.8E-60 T 12-10-2018 R615_04255 0dee1fa71aa29ecc53261f6fa75b423a 254 Pfam PF00005 ABC transporter 31 184 1.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_04255 0dee1fa71aa29ecc53261f6fa75b423a 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 253 1.1E-7 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal R615_04255 0dee1fa71aa29ecc53261f6fa75b423a 254 SMART SM00382 39 231 0.0029 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_04255 0dee1fa71aa29ecc53261f6fa75b423a 254 SUPERFAMILY SSF52540 13 252 5.0E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04255 0dee1fa71aa29ecc53261f6fa75b423a 254 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 14 254 9.8E-117 T 12-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD R615_04395 74fe7f0ce077292d68d4e82065fed1f4 131 SUPERFAMILY SSF54637 1 128 2.67E-36 T 12-10-2018 IPR029069 HotDog domain superfamily R615_04395 74fe7f0ce077292d68d4e82065fed1f4 131 Gene3D G3DSA:3.10.129.10 2 130 6.3E-36 T 12-10-2018 R615_04395 74fe7f0ce077292d68d4e82065fed1f4 131 Pfam PF13279 Thioesterase-like superfamily 9 123 2.4E-12 T 12-10-2018 R615_15070 14b11cc4e520e3036e0de6f2d72df324 183 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.536 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 R615_15070 14b11cc4e520e3036e0de6f2d72df324 183 Gene3D G3DSA:3.60.20.10 1 173 6.6E-67 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_15070 14b11cc4e520e3036e0de6f2d72df324 183 Pfam PF00227 Proteasome subunit 2 171 7.5E-22 T 12-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 R615_15070 14b11cc4e520e3036e0de6f2d72df324 183 PIRSF PIRSF039093 1 175 1.3E-86 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 R615_15070 14b11cc4e520e3036e0de6f2d72df324 183 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 2.2E-85 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 R615_15070 14b11cc4e520e3036e0de6f2d72df324 183 SUPERFAMILY SSF56235 1 172 2.65E-57 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_11610 fa00957322b8b5552f4046e21ca52997 171 Gene3D G3DSA:3.40.50.300 1 104 9.1E-10 T 12-10-2018 R615_11610 fa00957322b8b5552f4046e21ca52997 171 SUPERFAMILY SSF52540 1 105 1.43E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05010 f7d825b173a66ecd68879c47bbcb36f7 399 Pfam PF10082 Putative beta-barrel porin 2 22 397 8.8E-39 T 12-10-2018 IPR018759 Putative beta-barrel porin 2 R615_05620 8ad921ccd9cf67fb9070b1831ed0652f 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 144 313 5.3E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 R615_05620 8ad921ccd9cf67fb9070b1831ed0652f 321 Gene3D G3DSA:1.10.3720.10 118 315 1.1E-23 T 12-10-2018 IPR035906 MetI-like superfamily R615_05620 8ad921ccd9cf67fb9070b1831ed0652f 321 SUPERFAMILY SSF161098 123 305 6.41E-27 T 12-10-2018 IPR035906 MetI-like superfamily R615_07010 a95bb82e79d3ce0f05e90052eea703d7 80 Pfam PF01206 Sulfurtransferase TusA 10 78 4.0E-22 T 12-10-2018 IPR001455 TusA-like domain R615_07010 a95bb82e79d3ce0f05e90052eea703d7 80 Gene3D G3DSA:3.30.110.40 3 80 5.9E-25 T 12-10-2018 IPR036868 TusA-like domain superfamily R615_07010 a95bb82e79d3ce0f05e90052eea703d7 80 SUPERFAMILY SSF64307 8 79 9.16E-24 T 12-10-2018 IPR036868 TusA-like domain superfamily R615_16085 8941602221640a76e415a8ecfbe1b016 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 2.5E-31 T 12-10-2018 IPR021131 Ribosomal protein L18e/L15P R615_16085 8941602221640a76e415a8ecfbe1b016 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 12-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16085 8941602221640a76e415a8ecfbe1b016 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 9.0E-49 T 12-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16085 8941602221640a76e415a8ecfbe1b016 144 Gene3D G3DSA:3.100.10.10 69 144 2.4E-11 T 12-10-2018 R615_16085 8941602221640a76e415a8ecfbe1b016 144 SUPERFAMILY SSF52080 4 143 2.88E-45 T 12-10-2018 IPR036227 Ribosomal L18e/L15P superfamily R615_16085 8941602221640a76e415a8ecfbe1b016 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 19.086 T 12-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 1.1E-131 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 3.3E-114 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 Pfam PF00814 Glycoprotease family 24 311 9.6E-102 T 12-10-2018 IPR000905 Gcp-like domain R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 Gene3D G3DSA:3.30.420.40 129 297 2.2E-124 T 12-10-2018 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.1E-49 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.1E-49 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.1E-49 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.1E-49 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.1E-49 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.1E-49 T 12-10-2018 IPR017861 Kae1/TsaD family R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 12-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 SUPERFAMILY SSF53067 3 123 2.27E-30 T 12-10-2018 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 Gene3D G3DSA:3.30.420.40 3 318 2.2E-124 T 12-10-2018 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 63.581 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 R615_14495 61b1d196919ce1e710738f2c4f67dd2b 346 SUPERFAMILY SSF53067 101 313 5.5E-43 T 12-10-2018 R615_10020 3cc4f593f7685b114d4d9eba7de99121 124 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2 117 2.6E-27 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10020 3cc4f593f7685b114d4d9eba7de99121 124 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 5 29 - T 12-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10020 3cc4f593f7685b114d4d9eba7de99121 124 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 4 122 1.0E-36 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10020 3cc4f593f7685b114d4d9eba7de99121 124 SUPERFAMILY SSF81343 2 124 8.94E-31 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10020 3cc4f593f7685b114d4d9eba7de99121 124 PIRSF PIRSF000178 1 124 1.6E-26 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_10020 3cc4f593f7685b114d4d9eba7de99121 124 Gene3D G3DSA:1.20.1300.10 1 124 6.3E-39 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 R615_03280 f3fc71793a094729d3281d096c31454d 524 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 18 480 20.039 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 65 81 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 146 170 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 272 298 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 46 65 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 170 191 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 370 389 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PRINTS PR01806 Virulence factor MviN signature 422 439 4.1E-75 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 Pfam PF03023 MviN-like protein 43 483 6.9E-140 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 17 514 2.6E-143 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_03280 f3fc71793a094729d3281d096c31454d 524 PIRSF PIRSF002869 13 522 2.7E-157 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ R615_02980 542c2443e26b9f08a5b539e5b30f62b1 86 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 84 8.0E-29 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 R615_02980 542c2443e26b9f08a5b539e5b30f62b1 86 SUPERFAMILY SSF55229 35 85 4.05E-15 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 R615_02980 542c2443e26b9f08a5b539e5b30f62b1 86 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 85 19.242 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 R615_02980 542c2443e26b9f08a5b539e5b30f62b1 86 Pfam PF03776 Septum formation topological specificity factor MinE 16 83 3.1E-25 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 R615_02980 542c2443e26b9f08a5b539e5b30f62b1 86 Gene3D G3DSA:3.30.1070.10 1 84 1.6E-27 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 R615_09515 ef326816d22985c27dd54ad0ecccb78d 166 Pfam PF02472 Biopolymer transport protein ExbD/TolR 19 159 1.5E-20 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_12010 5724f0918bfa3935fce4e75cbac04285 152 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 47 88 7.1E-10 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_12010 5724f0918bfa3935fce4e75cbac04285 152 Pfam PF01345 Domain of unknown function DUF11 44 151 4.0E-12 T 12-10-2018 IPR001434 Domain of unknown function DUF11 R615_15890 c91cd742fb57c6e80b87dec2213403c8 318 Pfam PF05569 BlaR1 peptidase M56 154 206 2.3E-8 T 12-10-2018 IPR008756 Peptidase M56 R615_15890 c91cd742fb57c6e80b87dec2213403c8 318 Gene3D G3DSA:3.30.2010.10 119 201 7.8E-6 T 12-10-2018 R615_11170 6a09862b3f777ff34841e4e59b24b041 458 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 444 30.209 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 R615_11170 6a09862b3f777ff34841e4e59b24b041 458 Pfam PF02601 Exonuclease VII, large subunit 130 441 1.1E-104 T 12-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 R615_11170 6a09862b3f777ff34841e4e59b24b041 458 Pfam PF13742 OB-fold nucleic acid binding domain 14 106 4.1E-31 T 12-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 R615_11170 6a09862b3f777ff34841e4e59b24b041 458 Gene3D G3DSA:3.40.50.2300 135 295 3.2E-5 T 12-10-2018 R615_11170 6a09862b3f777ff34841e4e59b24b041 458 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 15 358 6.9E-142 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 R615_02315 06496febd085bc9f18cb4e802517db4b 298 Pfam PF04018 Domain of unknown function (DUF368) 13 257 2.3E-90 T 12-10-2018 IPR007163 Protein of unknown function DUF368 R615_09290 89ae91fabe3210858a6dad281ba1fc73 366 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 30 353 8.2E-76 T 12-10-2018 IPR003770 Endolytic murein transglycosylase R615_09290 89ae91fabe3210858a6dad281ba1fc73 366 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 29 354 32.15 T 12-10-2018 IPR003770 Endolytic murein transglycosylase R615_09290 89ae91fabe3210858a6dad281ba1fc73 366 Pfam PF02618 YceG-like family 63 349 9.8E-76 T 12-10-2018 IPR003770 Endolytic murein transglycosylase R615_09290 89ae91fabe3210858a6dad281ba1fc73 366 Gene3D G3DSA:3.30.160.60 324 359 4.3E-12 T 12-10-2018 R615_12270 b1a34ae6a216404cd055153aa81652b1 169 TIGRFAM TIGR03546 TIGR03546: TIGR03546 family protein 4 156 8.8E-48 T 12-10-2018 IPR019935 Conserved hypothetical protein CHP03546 R615_12270 b1a34ae6a216404cd055153aa81652b1 169 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 8 141 6.2E-14 T 12-10-2018 IPR018639 Domain of unknown function DUF2062 R615_17385 bd296feb422c3ad29c0179cba5327e20 90 Pfam PF03413 Peptidase propeptide and YPEB domain 45 86 6.0E-6 T 12-10-2018 IPR025711 PepSY domain R615_17385 bd296feb422c3ad29c0179cba5327e20 90 Gene3D G3DSA:3.10.450.40 33 89 1.8E-6 T 12-10-2018 R615_02685 f297747f52caef7e2ff6ddea37f17251 252 Pfam PF00005 ABC transporter 22 169 1.8E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_02685 f297747f52caef7e2ff6ddea37f17251 252 SMART SM00382 30 219 3.8E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02685 f297747f52caef7e2ff6ddea37f17251 252 SUPERFAMILY SSF52540 5 233 1.33E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02685 f297747f52caef7e2ff6ddea37f17251 252 Gene3D G3DSA:3.40.50.300 1 247 3.8E-65 T 12-10-2018 R615_04030 1c35ebefd7902ec47f217e91e8a65257 132 Pfam PF03840 Preprotein translocase SecG subunit 4 72 1.6E-20 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 R615_04030 1c35ebefd7902ec47f217e91e8a65257 132 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 8.6E-26 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 R615_04030 1c35ebefd7902ec47f217e91e8a65257 132 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 7.7E-40 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 R615_04030 1c35ebefd7902ec47f217e91e8a65257 132 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 7.7E-40 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 R615_04030 1c35ebefd7902ec47f217e91e8a65257 132 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 7.7E-40 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 R615_04030 1c35ebefd7902ec47f217e91e8a65257 132 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 7.7E-40 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 R615_08605 288387cd66ce86ce8a1316d4e4a4211c 211 Gene3D G3DSA:1.10.3890.10 2 210 2.9E-74 T 12-10-2018 IPR035932 HflD-like superfamily R615_08605 288387cd66ce86ce8a1316d4e4a4211c 211 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 206 33.699 T 12-10-2018 IPR007451 High frequency lysogenization protein HflD R615_08605 288387cd66ce86ce8a1316d4e4a4211c 211 SUPERFAMILY SSF101322 1 207 7.06E-65 T 12-10-2018 IPR035932 HflD-like superfamily R615_08605 288387cd66ce86ce8a1316d4e4a4211c 211 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 20 196 1.0E-29 T 12-10-2018 R615_08605 288387cd66ce86ce8a1316d4e4a4211c 211 Pfam PF04356 Protein of unknown function (DUF489) 7 198 2.4E-69 T 12-10-2018 IPR007451 High frequency lysogenization protein HflD R615_15025 84875bc1a458ff2b1850655c49675a92 185 Pfam PF00578 AhpC/TSA family 5 131 5.5E-34 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_15025 84875bc1a458ff2b1850655c49675a92 185 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 185 3.4E-103 T 12-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 R615_15025 84875bc1a458ff2b1850655c49675a92 185 Gene3D G3DSA:3.40.30.10 1 184 7.5E-62 T 12-10-2018 R615_15025 84875bc1a458ff2b1850655c49675a92 185 PIRSF PIRSF000239 2 185 2.2E-52 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_15025 84875bc1a458ff2b1850655c49675a92 185 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 154 179 2.0E-6 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_15025 84875bc1a458ff2b1850655c49675a92 185 SUPERFAMILY SSF52833 2 184 2.85E-55 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11065 4e2ec1c4b6c92f214366295b82b66a5d 217 Pfam PF13505 Outer membrane protein beta-barrel domain 6 177 1.0E-11 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel R615_11065 4e2ec1c4b6c92f214366295b82b66a5d 217 SUPERFAMILY SSF56925 29 215 4.71E-6 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_11065 4e2ec1c4b6c92f214366295b82b66a5d 217 Gene3D G3DSA:2.40.160.20 25 187 6.1E-8 T 12-10-2018 R615_01275 950da1af1af559414ce18a3a0a31efcf 366 SUPERFAMILY SSF52738 151 337 3.27E-38 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal R615_01275 950da1af1af559414ce18a3a0a31efcf 366 Gene3D G3DSA:3.40.50.180 146 340 2.5E-38 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal R615_01275 950da1af1af559414ce18a3a0a31efcf 366 Pfam PF01339 CheB methylesterase 156 330 1.6E-35 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 R615_07745 aa1357d66df2c5e77c627b6599c50dd4 226 Gene3D G3DSA:3.40.50.1820 32 216 2.0E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_07745 aa1357d66df2c5e77c627b6599c50dd4 226 SUPERFAMILY SSF53474 22 200 2.01E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_07745 aa1357d66df2c5e77c627b6599c50dd4 226 Pfam PF12697 Alpha/beta hydrolase family 34 136 8.1E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_05280 0bad268651efa2926a2be2830888810c 285 PIRSF PIRSF020479 2 283 1.4E-51 T 12-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like R615_05280 0bad268651efa2926a2be2830888810c 285 SUPERFAMILY SSF50341 144 280 1.02E-12 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 R615_05280 0bad268651efa2926a2be2830888810c 285 Pfam PF01584 CheW-like domain 147 279 4.3E-11 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_05280 0bad268651efa2926a2be2830888810c 285 SMART SM00260 143 277 5.9E-5 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 R615_17400 21ea7d381d9fe95f2f38e95762e29db9 311 PIRSF PIRSF002936 3 311 1.2E-136 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_17400 21ea7d381d9fe95f2f38e95762e29db9 311 SUPERFAMILY SSF52402 6 213 2.71E-70 T 12-10-2018 R615_17400 21ea7d381d9fe95f2f38e95762e29db9 311 Gene3D G3DSA:3.40.50.620 10 215 8.5E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_17400 21ea7d381d9fe95f2f38e95762e29db9 311 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 12 311 3.0E-140 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 R615_17400 21ea7d381d9fe95f2f38e95762e29db9 311 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 33 266 2.2E-55 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 R615_10375 5aadb0317a76aab7a212571347614422 493 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 2 490 49.334 T 12-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 R615_10375 5aadb0317a76aab7a212571347614422 493 Gene3D G3DSA:3.50.50.60 8 254 8.3E-7 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10375 5aadb0317a76aab7a212571347614422 493 Gene3D G3DSA:3.30.9.10 110 175 8.3E-7 T 12-10-2018 R615_10375 5aadb0317a76aab7a212571347614422 493 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 5 490 1.4E-227 T 12-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 R615_10375 5aadb0317a76aab7a212571347614422 493 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 6 484 2.3E-203 T 12-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 R615_10375 5aadb0317a76aab7a212571347614422 493 SUPERFAMILY SSF51905 3 323 6.04E-23 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10795 6c0271badc9ff8f2cbf8dfcb46a12e24 318 Gene3D G3DSA:1.10.357.10 69 275 2.8E-21 T 12-10-2018 R615_10795 6c0271badc9ff8f2cbf8dfcb46a12e24 318 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 83 96 6.0E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_10795 6c0271badc9ff8f2cbf8dfcb46a12e24 318 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 104 127 6.0E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_10795 6c0271badc9ff8f2cbf8dfcb46a12e24 318 Pfam PF00440 Bacterial regulatory proteins, tetR family 83 127 2.6E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_10795 6c0271badc9ff8f2cbf8dfcb46a12e24 318 SUPERFAMILY SSF46689 72 144 1.44E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_16325 f183ea22c41f8b83dda267c5cdbf5ab7 386 Pfam PF07885 Ion channel 46 116 1.0E-9 T 12-10-2018 IPR013099 Potassium channel domain R615_16325 f183ea22c41f8b83dda267c5cdbf5ab7 386 Gene3D G3DSA:3.40.50.720 132 268 3.9E-9 T 12-10-2018 R615_16325 f183ea22c41f8b83dda267c5cdbf5ab7 386 Gene3D G3DSA:1.10.287.70 11 131 1.1E-15 T 12-10-2018 R615_16325 f183ea22c41f8b83dda267c5cdbf5ab7 386 SUPERFAMILY SSF81324 17 142 5.76E-18 T 12-10-2018 R615_16325 f183ea22c41f8b83dda267c5cdbf5ab7 386 SUPERFAMILY SSF51735 174 286 2.1E-5 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00990 814a66ac6a157207d7352196ba61dc36 544 Pfam PF05199 GMC oxidoreductase 407 531 1.6E-20 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 R615_00990 814a66ac6a157207d7352196ba61dc36 544 Gene3D G3DSA:3.50.50.60 46 292 5.2E-23 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_00990 814a66ac6a157207d7352196ba61dc36 544 Pfam PF00732 GMC oxidoreductase 46 310 5.0E-48 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 R615_00990 814a66ac6a157207d7352196ba61dc36 544 SUPERFAMILY SSF51905 44 539 7.68E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_00990 814a66ac6a157207d7352196ba61dc36 544 Gene3D G3DSA:3.30.410.40 166 214 5.2E-23 T 12-10-2018 R615_00990 814a66ac6a157207d7352196ba61dc36 544 Gene3D G3DSA:3.50.50.60 423 543 1.2E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_05910 9a54f2ce2634d3d903017bfda6d192e1 418 Pfam PF01168 Alanine racemase, N-terminal domain 25 267 1.7E-22 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 R615_05910 9a54f2ce2634d3d903017bfda6d192e1 418 SUPERFAMILY SSF51419 25 270 3.01E-23 T 12-10-2018 IPR029066 PLP-binding barrel R615_05910 9a54f2ce2634d3d903017bfda6d192e1 418 Gene3D G3DSA:3.20.20.10 28 263 4.0E-39 T 12-10-2018 IPR029066 PLP-binding barrel R615_10865 3630a45340ef2383f8fc783f1694d66d 775 Gene3D G3DSA:3.40.50.300 481 756 6.5E-16 T 12-10-2018 R615_10865 3630a45340ef2383f8fc783f1694d66d 775 SUPERFAMILY SSF52540 4 751 9.87E-26 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10865 3630a45340ef2383f8fc783f1694d66d 775 Pfam PF13476 AAA domain 7 233 4.7E-9 T 12-10-2018 IPR038729 Rad50/SbcC-type AAA domain R615_10865 3630a45340ef2383f8fc783f1694d66d 775 Gene3D G3DSA:3.40.50.300 4 254 2.0E-17 T 12-10-2018 R615_17450 2e8a49911873f16567bcc5fab2faca52 280 PIRSF PIRSF007580 1 279 2.6E-76 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_17450 2e8a49911873f16567bcc5fab2faca52 280 Pfam PF10118 Predicted metal-dependent hydrolase 17 262 6.5E-87 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_05975 d9e9e015e74bdd16bbe88beddb952253 461 Gene3D G3DSA:3.40.50.300 12 207 9.7E-25 T 12-10-2018 R615_05975 d9e9e015e74bdd16bbe88beddb952253 461 Pfam PF11981 Domain of unknown function (DUF3482) 171 417 2.7E-71 T 12-10-2018 IPR021871 Protein of unknown function DUF3482 R615_05975 d9e9e015e74bdd16bbe88beddb952253 461 Pfam PF01926 50S ribosome-binding GTPase 16 158 4.3E-14 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_05975 d9e9e015e74bdd16bbe88beddb952253 461 SUPERFAMILY SSF52540 10 177 4.94E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01220 c2ee91befcd50eb0e2552898a6e9de6a 153 SUPERFAMILY SSF53098 11 142 1.29E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily R615_01220 c2ee91befcd50eb0e2552898a6e9de6a 153 Pfam PF03652 Holliday junction resolvase 13 142 1.1E-38 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 R615_01220 c2ee91befcd50eb0e2552898a6e9de6a 153 SMART SM00732 11 111 1.2E-26 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 R615_01220 c2ee91befcd50eb0e2552898a6e9de6a 153 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 11 146 23.051 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 R615_01220 c2ee91befcd50eb0e2552898a6e9de6a 153 Gene3D G3DSA:3.30.420.140 10 144 5.6E-40 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 R615_01220 c2ee91befcd50eb0e2552898a6e9de6a 153 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 14 142 6.7E-39 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 R615_00335 b61fe928f98dec2e4bf66fc3689ea7e2 389 Pfam PF05816 Toxic anion resistance protein (TelA) 45 349 6.5E-38 T 12-10-2018 IPR008863 Toxic anion resistance R615_11260 49e586846d322b5bb16189334c671ac1 409 SUPERFAMILY SSF103473 8 397 6.41E-35 T 12-10-2018 IPR036259 MFS transporter superfamily R615_11260 49e586846d322b5bb16189334c671ac1 409 Gene3D G3DSA:1.20.1250.20 3 207 2.8E-13 T 12-10-2018 R615_11260 49e586846d322b5bb16189334c671ac1 409 Gene3D G3DSA:1.20.1250.20 209 398 3.3E-13 T 12-10-2018 R615_11260 49e586846d322b5bb16189334c671ac1 409 Pfam PF07690 Major Facilitator Superfamily 13 344 3.1E-19 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 R615_13005 9d7a194b4bb8c2804d403f03153eae14 176 Gene3D G3DSA:3.40.50.360 1 176 2.7E-41 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_13005 9d7a194b4bb8c2804d403f03153eae14 176 SUPERFAMILY SSF52218 1 170 9.83E-38 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_13005 9d7a194b4bb8c2804d403f03153eae14 176 Pfam PF03358 NADPH-dependent FMN reductase 1 129 1.9E-29 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 R615_07475 962b4ee04175c8ca53ef1e3c53b61bb1 334 Pfam PF01758 Sodium Bile acid symporter family 47 238 3.2E-46 T 12-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 R615_07475 962b4ee04175c8ca53ef1e3c53b61bb1 334 Gene3D G3DSA:1.20.1530.20 2 328 4.1E-28 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_07475 962b4ee04175c8ca53ef1e3c53b61bb1 334 PIRSF PIRSF005508 1 334 8.2E-121 T 12-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 R615_07475 962b4ee04175c8ca53ef1e3c53b61bb1 334 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 1 326 2.4E-123 T 12-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 R615_16525 2883ad4cededd4dbb72b31894206c84b 155 Pfam PF14467 Domain of unknown function (DUF4426) 34 155 2.9E-39 T 12-10-2018 IPR025218 Domain of unknown function DUF4426 R615_16525 2883ad4cededd4dbb72b31894206c84b 155 Gene3D G3DSA:2.60.40.3340 22 155 2.9E-35 T 12-10-2018 R615_14505 7184bc57e03236930c8d6522a879c773 147 SUPERFAMILY SSF89095 1 146 3.82E-42 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 R615_14505 7184bc57e03236930c8d6522a879c773 147 Gene3D G3DSA:1.10.1510.10 1 90 1.3E-23 T 12-10-2018 R615_14505 7184bc57e03236930c8d6522a879c773 147 Pfam PF09424 Yqey-like protein 6 146 2.4E-53 T 12-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 R615_14505 7184bc57e03236930c8d6522a879c773 147 Gene3D G3DSA:1.10.10.410 91 147 5.2E-21 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal R615_14600 3fb71bd786a5ec03ab3b5e2f3aaf1011 270 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 20 269 36.413 T 12-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 R615_14600 3fb71bd786a5ec03ab3b5e2f3aaf1011 270 Gene3D G3DSA:3.40.50.150 26 269 2.7E-49 T 12-10-2018 R615_14600 3fb71bd786a5ec03ab3b5e2f3aaf1011 270 Pfam PF13489 Methyltransferase domain 59 216 1.7E-14 T 12-10-2018 R615_14600 3fb71bd786a5ec03ab3b5e2f3aaf1011 270 SUPERFAMILY SSF53335 20 268 7.35E-34 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_03135 656fe367622c3dec7c5dfecd789072fd 214 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 8 214 28.604 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 R615_03135 656fe367622c3dec7c5dfecd789072fd 214 Pfam PF01467 Cytidylyltransferase-like 12 188 4.8E-30 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_03135 656fe367622c3dec7c5dfecd789072fd 214 SUPERFAMILY SSF52374 10 214 6.22E-51 T 12-10-2018 R615_03135 656fe367622c3dec7c5dfecd789072fd 214 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 12 213 4.2E-52 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 R615_03135 656fe367622c3dec7c5dfecd789072fd 214 Gene3D G3DSA:3.40.50.620 6 213 6.8E-61 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_03135 656fe367622c3dec7c5dfecd789072fd 214 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 11 70 4.3E-12 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_16005 0ee647098ff0347f4bffbd0258e7cf6b 38 Pfam PF08173 Membrane bound YbgT-like protein 1 26 3.8E-17 T 12-10-2018 IPR012994 Membrane bound YbgT-like R615_16005 0ee647098ff0347f4bffbd0258e7cf6b 38 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 28 2.7E-19 T 12-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 R615_11915 b0de3f6cfb2e0eaf95a1fba2f563e419 763 SUPERFAMILY SSF46626 546 763 1.6E-7 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_11915 b0de3f6cfb2e0eaf95a1fba2f563e419 763 Gene3D G3DSA:2.60.40.10 69 176 5.9E-7 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_07670 5f29562e66917875b6867e2c58a4d2fe 111 Pfam PF09656 Putative transmembrane protein (PGPGW) 29 81 1.9E-5 T 12-10-2018 IPR019099 Uncharacterised protein family PGPGW, transmembrane R615_00625 9295f927379492c807d4982c7032e1ac 482 PIRSF PIRSF006247 1 482 6.4E-178 T 12-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 R615_00625 9295f927379492c807d4982c7032e1ac 482 Pfam PF02386 Cation transport protein 51 476 1.8E-86 T 12-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 R615_00625 9295f927379492c807d4982c7032e1ac 482 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 465 5.9E-117 T 12-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 R615_13040 8ec211e2c514b68e0afb4182597dfbd9 120 Pfam PF01292 Prokaryotic cytochrome b561 11 118 9.8E-14 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 R615_13040 8ec211e2c514b68e0afb4182597dfbd9 120 SUPERFAMILY SSF81342 19 120 8.37E-17 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 R615_16705 423d6ed99a3a1e2e4fe641ee2fec347d 220 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 187 8.5E-18 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 R615_16705 423d6ed99a3a1e2e4fe641ee2fec347d 220 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 28 207 3.3E-14 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 12-10-2018 IPR020845 AMP-binding, conserved site R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 Gene3D G3DSA:3.30.300.310 457 557 2.4E-32 T 12-10-2018 R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 Gene3D G3DSA:3.40.50.980 52 228 4.0E-118 T 12-10-2018 R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 Gene3D G3DSA:3.40.50.980 48 373 4.0E-118 T 12-10-2018 R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 1.8E-18 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 Gene3D G3DSA:2.30.38.10 374 454 4.0E-118 T 12-10-2018 R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 Pfam PF00501 AMP-binding enzyme 34 461 2.4E-107 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 R615_09500 9e3ffd20fd7ac1daf95d995e4b0dac9e 559 SUPERFAMILY SSF56801 23 554 3.14E-151 T 12-10-2018 R615_00515 7b6979f17d7c1cf29d92567847b4aadf 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 115 1.0E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain R615_00515 7b6979f17d7c1cf29d92567847b4aadf 122 Gene3D G3DSA:3.10.180.10 1 122 1.9E-38 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase R615_00515 7b6979f17d7c1cf29d92567847b4aadf 122 SUPERFAMILY SSF54593 3 121 8.39E-23 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase R615_04250 4dcc57d84aa55d64a61102e3e534adfc 229 Pfam PF00005 ABC transporter 18 158 5.4E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_04250 4dcc57d84aa55d64a61102e3e534adfc 229 SUPERFAMILY SSF52540 2 217 4.34E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04250 4dcc57d84aa55d64a61102e3e534adfc 229 Gene3D G3DSA:3.40.50.300 3 227 8.6E-57 T 12-10-2018 R615_04250 4dcc57d84aa55d64a61102e3e534adfc 229 SMART SM00382 26 208 6.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_04250 4dcc57d84aa55d64a61102e3e534adfc 229 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 4 229 2.9E-96 T 12-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE R615_02110 9d505ebac384467b00f7de2c03386a05 152 SUPERFAMILY SSF55804 3 146 2.35E-38 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 R615_02110 9d505ebac384467b00f7de2c03386a05 152 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 146 1.4E-34 T 12-10-2018 IPR002178 PTS EIIA type-2 domain R615_02110 9d505ebac384467b00f7de2c03386a05 152 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 5 146 1.4E-43 T 12-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 R615_02110 9d505ebac384467b00f7de2c03386a05 152 Gene3D G3DSA:3.40.930.10 1 150 2.4E-48 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 R615_16630 43202a31690773ad4bcae558b1244325 267 Pfam PF01553 Acyltransferase 77 205 5.0E-31 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_16630 43202a31690773ad4bcae558b1244325 267 SMART SM00563 92 207 7.6E-36 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_16630 43202a31690773ad4bcae558b1244325 267 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 87 204 9.0E-33 T 12-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 R615_16630 43202a31690773ad4bcae558b1244325 267 SUPERFAMILY SSF69593 27 264 2.88E-47 T 12-10-2018 R615_15345 541d2f77f53c0e36c334d1f80e0c6904 267 Gene3D G3DSA:1.20.120.1760 33 161 7.9E-15 T 12-10-2018 R615_15345 541d2f77f53c0e36c334d1f80e0c6904 267 Pfam PF01066 CDP-alcohol phosphatidyltransferase 39 102 2.0E-13 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 R615_15345 541d2f77f53c0e36c334d1f80e0c6904 267 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 46 206 1.5E-37 T 12-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 R615_15345 541d2f77f53c0e36c334d1f80e0c6904 267 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 80 102 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 R615_12870 c1cbd9a42c41ad37b4cc56effd0cf702 173 Pfam PF01618 MotA/TolQ/ExbB proton channel family 69 166 1.5E-20 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_16460 e2911e2f3cc150513f11b97471d45340 194 SUPERFAMILY SSF53448 1 122 3.13E-21 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_16460 e2911e2f3cc150513f11b97471d45340 194 Gene3D G3DSA:3.90.550.10 1 189 8.4E-34 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_16460 e2911e2f3cc150513f11b97471d45340 194 Pfam PF12804 MobA-like NTP transferase domain 5 119 7.3E-26 T 12-10-2018 IPR025877 MobA-like NTP transferase R615_03550 58ea648147702bd5cf93034adb98b2c3 314 SUPERFAMILY SSF51735 16 160 5.83E-23 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_03550 58ea648147702bd5cf93034adb98b2c3 314 Pfam PF02558 Ketopantoate reductase PanE/ApbA 17 157 8.1E-17 T 12-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain R615_03550 58ea648147702bd5cf93034adb98b2c3 314 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 190 306 3.9E-27 T 12-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain R615_03550 58ea648147702bd5cf93034adb98b2c3 314 Gene3D G3DSA:3.40.50.720 15 174 7.1E-25 T 12-10-2018 R615_03550 58ea648147702bd5cf93034adb98b2c3 314 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 17 307 1.7E-53 T 12-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 R615_03550 58ea648147702bd5cf93034adb98b2c3 314 Gene3D G3DSA:1.10.1040.10 188 311 1.4E-35 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 R615_03550 58ea648147702bd5cf93034adb98b2c3 314 SUPERFAMILY SSF48179 188 307 7.82E-26 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 25 275 2.5E-76 T 12-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 Pfam PF01026 TatD related DNase 27 275 1.0E-71 T 12-10-2018 IPR001130 TatD family GO:0016788 R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 212 228 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 SUPERFAMILY SSF51556 25 275 1.39E-84 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 PIRSF PIRSF005902 2 276 2.2E-78 T 12-10-2018 IPR001130 TatD family GO:0016788 R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 Gene3D G3DSA:3.20.20.140 15 276 1.7E-87 T 12-10-2018 R615_13695 0b818fef9dd76d81476ade41e58d33e8 276 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 146 156 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 R615_01580 3eedf85c348397a2159da7dd72fa7777 719 Gene3D G3DSA:3.20.20.140 327 455 1.3E-9 T 12-10-2018 R615_01580 3eedf85c348397a2159da7dd72fa7777 719 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 338 446 1.3E-8 T 12-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 R615_01580 3eedf85c348397a2159da7dd72fa7777 719 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 509 565 8.0E-5 T 12-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 R615_01580 3eedf85c348397a2159da7dd72fa7777 719 Gene3D G3DSA:3.20.20.140 496 640 1.4E-7 T 12-10-2018 R615_01580 3eedf85c348397a2159da7dd72fa7777 719 SUPERFAMILY SSF51556 277 652 2.82E-31 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_11850 3b98e9d70b828a67ff33606dea4aeac2 226 Gene3D G3DSA:2.40.160.20 21 226 2.6E-14 T 12-10-2018 R615_11850 3b98e9d70b828a67ff33606dea4aeac2 226 SUPERFAMILY SSF56925 25 226 1.44E-10 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_13820 dbfb3d215117ccd155f8dc64311ee2cc 561 Pfam PF15975 Flotillin 424 551 1.8E-38 T 12-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 R615_13820 dbfb3d215117ccd155f8dc64311ee2cc 561 SMART SM00244 26 195 2.5E-7 T 12-10-2018 IPR001107 Band 7 domain R615_13820 dbfb3d215117ccd155f8dc64311ee2cc 561 SUPERFAMILY SSF117892 57 189 7.59E-23 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily R615_13820 dbfb3d215117ccd155f8dc64311ee2cc 561 Gene3D G3DSA:3.30.479.30 66 185 6.8E-27 T 12-10-2018 R615_17415 42d27855cb66c2ee9663f9c86961f378 293 SUPERFAMILY SSF53850 94 289 2.56E-24 T 12-10-2018 R615_17415 42d27855cb66c2ee9663f9c86961f378 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 4.6E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_17415 42d27855cb66c2ee9663f9c86961f378 293 SUPERFAMILY SSF46785 3 112 4.27E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_17415 42d27855cb66c2ee9663f9c86961f378 293 Gene3D G3DSA:1.10.10.10 3 95 5.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_17415 42d27855cb66c2ee9663f9c86961f378 293 Gene3D G3DSA:3.40.190.290 96 292 8.5E-18 T 12-10-2018 R615_17415 42d27855cb66c2ee9663f9c86961f378 293 Pfam PF03466 LysR substrate binding domain 94 288 1.5E-21 T 12-10-2018 IPR005119 LysR, substrate-binding R615_17415 42d27855cb66c2ee9663f9c86961f378 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_17415 42d27855cb66c2ee9663f9c86961f378 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_17415 42d27855cb66c2ee9663f9c86961f378 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_12400 0ac29e245941d1aeb465faba67b5b538 203 SMART SM00903 19 173 3.4E-9 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 R615_12400 0ac29e245941d1aeb465faba67b5b538 203 SUPERFAMILY SSF50475 1 198 7.85E-35 T 12-10-2018 R615_12400 0ac29e245941d1aeb465faba67b5b538 203 Gene3D G3DSA:2.30.110.10 1 203 1.1E-56 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 R615_12400 0ac29e245941d1aeb465faba67b5b538 203 Pfam PF01613 Flavin reductase like domain 22 163 4.4E-16 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 R615_00860 8917d52750f49dc3a9e6c8d71c87e1f3 283 SUPERFAMILY SSF51735 1 278 5.87E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_00860 8917d52750f49dc3a9e6c8d71c87e1f3 283 Gene3D G3DSA:3.40.50.720 1 281 1.3E-87 T 12-10-2018 R615_00860 8917d52750f49dc3a9e6c8d71c87e1f3 283 Pfam PF13460 NAD(P)H-binding 8 162 6.3E-17 T 12-10-2018 IPR016040 NAD(P)-binding domain R615_04355 d16ee4fe2b1209bd12464223b65c62cb 590 Gene3D G3DSA:3.40.1350.10 512 588 6.7E-6 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 R615_04355 d16ee4fe2b1209bd12464223b65c62cb 590 SMART SM00990 463 587 7.1E-21 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 R615_04355 d16ee4fe2b1209bd12464223b65c62cb 590 Pfam PF08774 VRR-NUC domain 478 586 3.0E-23 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 R615_14960 c895a92ab98aa4e992b826c15ab1d8f7 319 Pfam PF01925 Sulfite exporter TauE/SafE 60 277 9.0E-22 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 R615_12480 65e010695aacaf7609d3f1fc4daa9735 193 Pfam PF07298 NnrU protein 4 190 1.3E-53 T 12-10-2018 IPR009915 NnrU domain R615_00195 0925fa737a8ff043776709ce3fbe80ed 269 Pfam PF01226 Formate/nitrite transporter 8 257 1.5E-64 T 12-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 R615_00195 0925fa737a8ff043776709ce3fbe80ed 269 Gene3D G3DSA:1.20.1080.10 1 249 2.5E-68 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 R615_17360 b3cc96602637fc980e299c2bb98396e3 216 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 209 27.927 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 R615_17360 b3cc96602637fc980e299c2bb98396e3 216 Pfam PF02527 rRNA small subunit methyltransferase G 29 208 4.9E-61 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 R615_17360 b3cc96602637fc980e299c2bb98396e3 216 Gene3D G3DSA:3.40.50.150 2 215 4.5E-70 T 12-10-2018 R615_17360 b3cc96602637fc980e299c2bb98396e3 216 SUPERFAMILY SSF53335 13 212 2.24E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_17360 b3cc96602637fc980e299c2bb98396e3 216 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 32 208 3.2E-58 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 R615_17360 b3cc96602637fc980e299c2bb98396e3 216 PIRSF PIRSF003078 4 212 9.2E-58 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 R615_00065 cac967266f91804b5e66c4c1be11b9b1 269 SMART SM00563 88 202 5.2E-26 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_00065 cac967266f91804b5e66c4c1be11b9b1 269 SUPERFAMILY SSF69593 20 251 1.27E-36 T 12-10-2018 R615_00065 cac967266f91804b5e66c4c1be11b9b1 269 Pfam PF01553 Acyltransferase 73 199 3.7E-17 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_02060 0635f289accec5d30ecbc499e096fb98 265 Gene3D G3DSA:2.40.10.340 99 242 4.0E-32 T 12-10-2018 R615_02060 0635f289accec5d30ecbc499e096fb98 265 PIRSF PIRSF038471 1 259 2.5E-68 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 R615_02060 0635f289accec5d30ecbc499e096fb98 265 Gene3D G3DSA:2.40.10.350 158 235 4.0E-32 T 12-10-2018 R615_02060 0635f289accec5d30ecbc499e096fb98 265 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 53 249 7.4E-51 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 R615_02060 0635f289accec5d30ecbc499e096fb98 265 Pfam PF04085 rod shape-determining protein MreC 102 245 1.0E-34 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 R615_16470 9e04886887c7337abc90b00c41c8bce5 162 Pfam PF01967 MoaC family 15 150 1.1E-52 T 12-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16470 9e04886887c7337abc90b00c41c8bce5 162 SUPERFAMILY SSF55040 11 155 1.57E-60 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16470 9e04886887c7337abc90b00c41c8bce5 162 Gene3D G3DSA:3.30.70.640 1 160 1.2E-66 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16470 9e04886887c7337abc90b00c41c8bce5 162 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 34.791 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_16470 9e04886887c7337abc90b00c41c8bce5 162 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 1.7E-65 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 R615_00935 075529cd2303ce6a7a9eff0a12197e1d 151 Pfam PF00692 dUTPase 17 149 8.8E-41 T 12-10-2018 IPR029054 dUTPase-like R615_00935 075529cd2303ce6a7a9eff0a12197e1d 151 Gene3D G3DSA:2.70.40.10 1 150 1.6E-52 T 12-10-2018 IPR036157 dUTPase-like superfamily R615_00935 075529cd2303ce6a7a9eff0a12197e1d 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 150 1.0E-48 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 R615_00935 075529cd2303ce6a7a9eff0a12197e1d 151 SUPERFAMILY SSF51283 1 150 4.06E-53 T 12-10-2018 IPR036157 dUTPase-like superfamily R615_00935 075529cd2303ce6a7a9eff0a12197e1d 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 33.473 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 R615_03385 f7ad6191bd09b5634a25fe5e838d81cd 243 SUPERFAMILY SSF64438 6 242 2.38E-71 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic R615_03385 f7ad6191bd09b5634a25fe5e838d81cd 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 29 241 3.5E-49 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase R615_03385 f7ad6191bd09b5634a25fe5e838d81cd 243 Gene3D G3DSA:3.60.140.10 1 243 4.8E-80 T 12-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily R615_03385 f7ad6191bd09b5634a25fe5e838d81cd 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 23 240 1.4E-68 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 Gene3D G3DSA:3.40.50.10490 95 279 6.8E-37 T 12-10-2018 R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 78 2.6E-23 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 SUPERFAMILY SSF53697 88 280 1.52E-34 T 12-10-2018 R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 Pfam PF01380 SIS domain 128 256 1.1E-17 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 SUPERFAMILY SSF46689 5 77 4.3E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 Gene3D G3DSA:1.10.10.10 1 82 5.3E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16685 5c9e30225f901cd86fe454bf21df4bec 283 ProSitePatterns PS00356 LacI-type HTH domain signature. 40 58 - T 12-10-2018 R615_01540 6361d321862cfbcbdad6d43b585751bf 219 Gene3D G3DSA:1.10.1760.20 4 206 3.6E-5 T 12-10-2018 R615_01540 6361d321862cfbcbdad6d43b585751bf 219 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 10 207 4.8E-13 T 12-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 R615_06265 84d1507efeb4f517b39fa8f8681dc2e6 392 SMART SM00028 179 212 240.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_06265 84d1507efeb4f517b39fa8f8681dc2e6 392 SMART SM00028 213 246 0.0024 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_06265 84d1507efeb4f517b39fa8f8681dc2e6 392 SUPERFAMILY SSF48452 109 258 8.06E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_06265 84d1507efeb4f517b39fa8f8681dc2e6 392 Gene3D G3DSA:1.25.40.10 31 260 1.2E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_06265 84d1507efeb4f517b39fa8f8681dc2e6 392 Pfam PF13432 Tetratricopeptide repeat 184 245 5.5E-6 T 12-10-2018 R615_08525 759c2913db3396650bf8d326b1f9b956 445 Pfam PF16325 Peptidase family U32 C-terminal domain 355 422 1.1E-13 T 12-10-2018 IPR032525 Peptidase family U32, C-terminal R615_08525 759c2913db3396650bf8d326b1f9b956 445 Pfam PF01136 Peptidase family U32 76 337 5.1E-98 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 R615_08525 759c2913db3396650bf8d326b1f9b956 445 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 R615_05800 a7f1f41129ae244c17a40e29eadfca76 630 Gene3D G3DSA:2.60.20.10 118 230 4.4E-7 T 12-10-2018 R615_04145 270eddc3b7c7475290e858e7840c28ff 508 Pfam PF02646 RmuC family 182 477 7.4E-100 T 12-10-2018 IPR003798 DNA recombination RmuC R615_14980 0178210d356af860db104e1494fe1b6b 160 SUPERFAMILY SSF52799 8 126 1.27E-10 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like R615_14980 0178210d356af860db104e1494fe1b6b 160 Pfam PF04273 Putative phosphatase (DUF442) 12 114 3.4E-12 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 R615_14980 0178210d356af860db104e1494fe1b6b 160 Gene3D G3DSA:3.90.190.10 2 155 1.3E-30 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like R615_06875 692877f9659d090eb5a21c6776ca5fed 164 Gene3D G3DSA:3.40.50.7700 1 164 4.2E-73 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 R615_06875 692877f9659d090eb5a21c6776ca5fed 164 Pfam PF00731 AIR carboxylase 5 152 1.8E-64 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 R615_06875 692877f9659d090eb5a21c6776ca5fed 164 SMART SM01001 3 154 3.5E-104 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 R615_06875 692877f9659d090eb5a21c6776ca5fed 164 PIRSF PIRSF001338 1 163 1.6E-67 T 12-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 R615_06875 692877f9659d090eb5a21c6776ca5fed 164 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 32.472 T 12-10-2018 IPR033747 Class I PurE R615_06875 692877f9659d090eb5a21c6776ca5fed 164 SUPERFAMILY SSF52255 4 160 2.88E-66 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 R615_06875 692877f9659d090eb5a21c6776ca5fed 164 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 158 3.6E-66 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 R615_03880 5e278e235245c31db1e45e053dfa7864 367 Pfam PF13310 Virulence protein RhuM family 79 330 9.2E-105 T 12-10-2018 IPR011204 Virulence protein RhuM-like R615_03880 5e278e235245c31db1e45e053dfa7864 367 PIRSF PIRSF015268 13 356 5.0E-135 T 12-10-2018 IPR011204 Virulence protein RhuM-like R615_01230 f560bbd2f6dc4ae413e32f406176cb34 292 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 206 282 1.2E-11 T 12-10-2018 IPR006260 TonB/TolA, C-terminal R615_01230 f560bbd2f6dc4ae413e32f406176cb34 292 Gene3D G3DSA:3.30.1150.10 163 279 6.2E-17 T 12-10-2018 R615_01230 f560bbd2f6dc4ae413e32f406176cb34 292 SUPERFAMILY SSF74653 171 284 3.53E-17 T 12-10-2018 R615_01230 f560bbd2f6dc4ae413e32f406176cb34 292 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 206 268 2.1E-11 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 R615_05095 0f00dfb26c3c5dab4be8323ce6c5bdf8 145 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 36 145 17.304 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 R615_05095 0f00dfb26c3c5dab4be8323ce6c5bdf8 145 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 109 125 1.1E-14 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 R615_05095 0f00dfb26c3c5dab4be8323ce6c5bdf8 145 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 74 90 1.1E-14 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 R615_05095 0f00dfb26c3c5dab4be8323ce6c5bdf8 145 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 130 143 1.1E-14 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 R615_05095 0f00dfb26c3c5dab4be8323ce6c5bdf8 145 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 56 144 3.3E-22 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 R615_05095 0f00dfb26c3c5dab4be8323ce6c5bdf8 145 Pfam PF02049 Flagellar hook-basal body complex protein FliE 66 145 2.7E-29 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 R615_10350 95e1dd3e1f02018c3009e7ddbcc7959a 308 Gene3D G3DSA:3.30.450.20 2 136 1.1E-7 T 12-10-2018 R615_10350 95e1dd3e1f02018c3009e7ddbcc7959a 308 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 144 306 5.2E-48 T 12-10-2018 IPR000160 GGDEF domain R615_10350 95e1dd3e1f02018c3009e7ddbcc7959a 308 SUPERFAMILY SSF55073 152 307 6.04E-45 T 12-10-2018 IPR029787 Nucleotide cyclase R615_10350 95e1dd3e1f02018c3009e7ddbcc7959a 308 SMART SM00267 136 308 1.5E-50 T 12-10-2018 IPR000160 GGDEF domain R615_10350 95e1dd3e1f02018c3009e7ddbcc7959a 308 Gene3D G3DSA:3.30.70.270 137 307 1.1E-51 T 12-10-2018 R615_10350 95e1dd3e1f02018c3009e7ddbcc7959a 308 Pfam PF00990 Diguanylate cyclase, GGDEF domain 147 305 3.3E-45 T 12-10-2018 IPR000160 GGDEF domain R615_03920 f33892c01bc674be73ab69035c317ba0 162 Pfam PF04355 SmpA / OmlA family 61 128 5.3E-21 T 12-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 R615_03920 f33892c01bc674be73ab69035c317ba0 162 Gene3D G3DSA:3.30.1450.10 60 145 7.3E-25 T 12-10-2018 IPR037873 BamE-like R615_03920 f33892c01bc674be73ab69035c317ba0 162 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 32 153 26.829 T 12-10-2018 IPR026592 Outer membrane protein assembly factor BamE R615_04935 009751c03c4c509f080a1f1ec515fd01 139 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 11 132 2.9E-27 T 12-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 R615_04935 009751c03c4c509f080a1f1ec515fd01 139 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 9 132 6.4E-42 T 12-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 R615_04935 009751c03c4c509f080a1f1ec515fd01 139 Gene3D G3DSA:1.20.120.330 11 135 1.7E-34 T 12-10-2018 R615_04935 009751c03c4c509f080a1f1ec515fd01 139 SUPERFAMILY SSF81593 4 130 2.08E-40 T 12-10-2018 R615_13560 d9c456f80541cd3f3b1365b0bc33bfc0 687 SUPERFAMILY SSF53474 300 578 1.24E-10 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16835 5d86500809822095ba524ca03e0f99cb 260 Pfam PF01925 Sulfite exporter TauE/SafE 6 256 1.4E-54 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 R615_09800 9c8caef131db5480cc5672197184225d 305 SUPERFAMILY SSF52540 7 283 3.86E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_09800 9c8caef131db5480cc5672197184225d 305 Gene3D G3DSA:3.40.50.300 1 196 5.3E-47 T 12-10-2018 R615_09800 9c8caef131db5480cc5672197184225d 305 Gene3D G3DSA:1.10.8.300 198 301 2.1E-21 T 12-10-2018 R615_09800 9c8caef131db5480cc5672197184225d 305 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 35 167 2.3E-61 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 R615_09800 9c8caef131db5480cc5672197184225d 305 PIRSF PIRSF002849 1 302 1.7E-113 T 12-10-2018 R615_06350 58bce8f8e02bae09f86ba0caf7ad0f83 372 SUPERFAMILY SSF53383 12 371 5.67E-104 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase R615_06350 58bce8f8e02bae09f86ba0caf7ad0f83 372 Gene3D G3DSA:3.40.640.10 1 247 2.7E-86 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 R615_06350 58bce8f8e02bae09f86ba0caf7ad0f83 372 PIRSF PIRSF000390 2 372 9.7E-102 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase R615_06350 58bce8f8e02bae09f86ba0caf7ad0f83 372 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 367 1.5E-118 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase R615_06350 58bce8f8e02bae09f86ba0caf7ad0f83 372 Gene3D G3DSA:3.90.1150.10 249 372 9.5E-31 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 SUPERFAMILY SSF63411 25 258 3.67E-47 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Gene3D G3DSA:3.30.830.10 544 794 4.0E-103 T 12-10-2018 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Pfam PF00675 Insulinase (Peptidase family M16) 72 158 1.8E-8 T 12-10-2018 IPR011765 Peptidase M16, N-terminal R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Gene3D G3DSA:3.30.830.10 515 956 4.0E-103 T 12-10-2018 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Pfam PF08367 Peptidase M16C associated 480 721 6.6E-54 T 12-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Pfam PF05193 Peptidase M16 inactive domain 806 898 3.6E-5 T 12-10-2018 IPR007863 Peptidase M16, C-terminal R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Pfam PF05193 Peptidase M16 inactive domain 221 406 2.5E-14 T 12-10-2018 IPR007863 Peptidase M16, C-terminal R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 SUPERFAMILY SSF63411 275 537 2.17E-53 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 SUPERFAMILY SSF63411 796 969 3.5E-38 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 SMART SM01264 480 727 9.1E-66 T 12-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Gene3D G3DSA:3.30.830.10 8 269 2.5E-82 T 12-10-2018 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 Gene3D G3DSA:3.30.830.10 271 503 1.3E-60 T 12-10-2018 R615_09240 0d347ccdadaaca10d5fb6be6b74e024d 984 SUPERFAMILY SSF63411 536 780 1.18E-44 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 R615_00505 bbb795e4226b41403fad45e63931c73e 692 Gene3D G3DSA:1.10.1370.10 150 618 1.7E-268 T 12-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 R615_00505 bbb795e4226b41403fad45e63931c73e 692 SUPERFAMILY SSF55486 12 685 1.1E-210 T 12-10-2018 R615_00505 bbb795e4226b41403fad45e63931c73e 692 Pfam PF01432 Peptidase family M3 232 685 1.4E-154 T 12-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 R615_00505 bbb795e4226b41403fad45e63931c73e 692 Gene3D G3DSA:1.10.1370.40 23 683 1.7E-268 T 12-10-2018 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 Pfam PF00333 Ribosomal protein S5, N-terminal domain 19 83 4.5E-29 T 12-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 SUPERFAMILY SSF54768 15 84 1.46E-23 T 12-10-2018 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 ProSitePatterns PS00585 Ribosomal protein S5 signature. 36 68 - T 12-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 Gene3D G3DSA:3.30.230.10 82 174 4.4E-37 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 171 34.516 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 Gene3D G3DSA:3.30.160.20 10 81 2.7E-31 T 12-10-2018 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 16 171 1.8E-66 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 Pfam PF03719 Ribosomal protein S5, C-terminal domain 95 165 1.5E-31 T 12-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 R615_16095 4d0081bedf4a3e14b4365f11562f1291 174 SUPERFAMILY SSF54211 87 167 2.1E-27 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_05065 f212744736ed3f73a5f0cbdd8236a54c 657 SUPERFAMILY SSF48452 14 144 8.85E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_05065 f212744736ed3f73a5f0cbdd8236a54c 657 SUPERFAMILY SSF53335 385 611 1.49E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_05065 f212744736ed3f73a5f0cbdd8236a54c 657 Pfam PF13847 Methyltransferase domain 409 545 2.3E-17 T 12-10-2018 IPR025714 Methyltransferase domain R615_05065 f212744736ed3f73a5f0cbdd8236a54c 657 Gene3D G3DSA:1.25.40.10 2 164 1.1E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_03160 2838cb1a5ebcf86021d92ae366fef72e 289 Pfam PF04072 Leucine carboxyl methyltransferase 66 180 6.3E-15 T 12-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 R615_03160 2838cb1a5ebcf86021d92ae366fef72e 289 SUPERFAMILY SSF53335 62 269 1.6E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_03160 2838cb1a5ebcf86021d92ae366fef72e 289 Gene3D G3DSA:3.40.50.150 32 271 1.2E-24 T 12-10-2018 R615_00465 a2d0af00859a3599e7182c732d729898 354 Pfam PF02169 LPP20 lipoprotein 47 154 4.2E-9 T 12-10-2018 IPR024952 Lipoprotein LPP20-like R615_09145 b7c3d3f0cc6d701be56e657e314f33f0 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 4 107 3.8E-36 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 R615_09145 b7c3d3f0cc6d701be56e657e314f33f0 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 24.032 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 R615_17365 d6da76f5c6f8c683190fc48aa129ed28 388 Gene3D G3DSA:1.20.1250.20 209 388 3.7E-7 T 12-10-2018 R615_17365 d6da76f5c6f8c683190fc48aa129ed28 388 Gene3D G3DSA:1.20.1250.20 12 198 2.6E-12 T 12-10-2018 R615_17365 d6da76f5c6f8c683190fc48aa129ed28 388 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 23 378 1.6E-59 T 12-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB R615_17365 d6da76f5c6f8c683190fc48aa129ed28 388 ProSitePatterns PS00217 Sugar transport proteins signature 2. 110 135 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 R615_17365 d6da76f5c6f8c683190fc48aa129ed28 388 SUPERFAMILY SSF103473 6 384 8.76E-28 T 12-10-2018 IPR036259 MFS transporter superfamily R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 ProSitePatterns PS00056 Ribosomal protein S17 signature. 61 73 - T 12-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 Gene3D G3DSA:2.40.50.140 7 87 7.3E-34 T 12-10-2018 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 SUPERFAMILY SSF50249 11 86 2.31E-30 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 PRINTS PR00973 Ribosomal protein S17 family signature 71 78 1.6E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 PRINTS PR00973 Ribosomal protein S17 family signature 29 52 1.6E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 PRINTS PR00973 Ribosomal protein S17 family signature 61 71 1.6E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 11 81 6.0E-27 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 10 85 23.759 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 11 81 2.6E-35 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_16135 d8b25506b706ab905e26ef0241bb5e64 90 Pfam PF00366 Ribosomal protein S17 15 81 6.8E-32 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 SMART SM00267 436 611 2.5E-56 T 12-10-2018 IPR000160 GGDEF domain R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 443 610 9.2E-51 T 12-10-2018 IPR000160 GGDEF domain R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 Pfam PF07696 7TMR-DISM extracellular 2 46 176 4.8E-27 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 Pfam PF07695 7TM diverse intracellular signalling 190 390 7.0E-32 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 SUPERFAMILY SSF55073 452 610 4.63E-46 T 12-10-2018 IPR029787 Nucleotide cyclase R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 Gene3D G3DSA:2.60.40.2380 44 183 1.7E-27 T 12-10-2018 R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 Gene3D G3DSA:3.30.70.270 432 611 1.6E-54 T 12-10-2018 R615_14525 a70722ff9e836c43d120ad8fcb4d53b2 612 Pfam PF00990 Diguanylate cyclase, GGDEF domain 448 607 1.3E-44 T 12-10-2018 IPR000160 GGDEF domain R615_08995 77bdd7266194590a121713ebb7c19265 433 SUPERFAMILY SSF56059 111 401 2.12E-6 T 12-10-2018 R615_15500 a599bc5ef0f2a7efcc1c450fab4f73d0 370 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 27 303 7.0E-51 T 12-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain R615_15500 a599bc5ef0f2a7efcc1c450fab4f73d0 370 SUPERFAMILY SSF53590 25 303 7.19E-57 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like R615_15500 a599bc5ef0f2a7efcc1c450fab4f73d0 370 Gene3D G3DSA:3.90.245.10 14 314 5.4E-69 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like R615_11925 a753b865397f0c9cc9764a6c6af20ef1 591 Pfam PF00474 Sodium:solute symporter family 392 507 4.6E-14 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 R615_11925 a753b865397f0c9cc9764a6c6af20ef1 591 Pfam PF00474 Sodium:solute symporter family 33 297 1.2E-35 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 R615_11925 a753b865397f0c9cc9764a6c6af20ef1 591 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 7 582 1.9E-255 T 12-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily R615_11925 a753b865397f0c9cc9764a6c6af20ef1 591 Gene3D G3DSA:1.20.1730.10 21 330 1.6E-36 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily R615_11925 a753b865397f0c9cc9764a6c6af20ef1 591 Gene3D G3DSA:1.20.1730.10 358 566 2.1E-23 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily R615_11925 a753b865397f0c9cc9764a6c6af20ef1 591 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 489 509 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site R615_07160 8f46be22214b44189e91f9b77750ef5b 171 Pfam PF03061 Thioesterase superfamily 57 129 1.0E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_07160 8f46be22214b44189e91f9b77750ef5b 171 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 133 8.6E-17 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 R615_07160 8f46be22214b44189e91f9b77750ef5b 171 SUPERFAMILY SSF54637 15 135 4.6E-28 T 12-10-2018 IPR029069 HotDog domain superfamily R615_07160 8f46be22214b44189e91f9b77750ef5b 171 Gene3D G3DSA:3.10.129.10 7 162 5.9E-43 T 12-10-2018 R615_16540 feca019681933d4cd4112ec1b8ab969d 381 SUPERFAMILY SSF102114 4 377 7.85E-106 T 12-10-2018 R615_16540 feca019681933d4cd4112ec1b8ab969d 381 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 6 365 1.3E-119 T 12-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 R615_16540 feca019681933d4cd4112ec1b8ab969d 381 Gene3D G3DSA:3.80.30.20 2 294 1.7E-102 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe R615_16540 feca019681933d4cd4112ec1b8ab969d 381 SMART SM00729 5 221 8.4E-56 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 R615_16540 feca019681933d4cd4112ec1b8ab969d 381 Pfam PF04055 Radical SAM superfamily 10 175 3.1E-22 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 R615_16540 feca019681933d4cd4112ec1b8ab969d 381 Pfam PF06969 HemN C-terminal domain 307 365 9.1E-12 T 12-10-2018 IPR010723 HemN, C-terminal R615_12440 b6230249eaef4e030c25d8833424ffa6 317 Pfam PF14397 Sugar-transfer associated ATP-grasp 20 293 1.0E-113 T 12-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 R615_12440 b6230249eaef4e030c25d8833424ffa6 317 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 7 316 7.3E-133 T 12-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein R615_12440 b6230249eaef4e030c25d8833424ffa6 317 SUPERFAMILY SSF56059 42 280 1.01E-19 T 12-10-2018 R615_12570 8e291fd21656879c3d8e249b2900871b 188 PIRSF PIRSF016919 1 188 1.0E-51 T 12-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein R615_12570 8e291fd21656879c3d8e249b2900871b 188 Pfam PF04955 HupE / UreJ protein 9 185 1.9E-52 T 12-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein R615_02405 49682a46ab9e7e75948ff46cb4897f3b 196 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 92 1.4E-8 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 R615_02405 49682a46ab9e7e75948ff46cb4897f3b 196 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 39 82 3.9E-10 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 R615_02405 49682a46ab9e7e75948ff46cb4897f3b 196 Gene3D G3DSA:1.20.1290.10 39 155 3.2E-17 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 R615_02405 49682a46ab9e7e75948ff46cb4897f3b 196 SUPERFAMILY SSF69118 29 148 4.32E-20 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 R615_08580 976432e830c70f024bab58f6b5c54cbf 284 SUPERFAMILY SSF56596 2 249 1.16E-5 T 12-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 Pfam PF01844 HNH endonuclease 503 548 2.4E-12 T 12-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 61 410 8.7E-115 T 12-10-2018 IPR030931 Group II intron reverse transcriptase/maturase R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 113 329 1.2E-43 T 12-10-2018 IPR000477 Reverse transcriptase domain R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 Pfam PF08388 Group II intron, maturase-specific domain 345 423 3.4E-21 T 12-10-2018 IPR013597 Group II intron, maturase-specific R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 SMART SM00507 492 544 2.6E-9 T 12-10-2018 IPR003615 HNH nuclease R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 SUPERFAMILY SSF56672 80 406 2.48E-49 T 12-10-2018 R615_13775 8071ea6385eb42c1c79f86f4dbc89086 563 Pfam PF13655 N-terminal domain of reverse transcriptase 17 97 4.1E-31 T 12-10-2018 IPR025960 Reverse transcriptase, N-terminal domain R615_11175 938f00956b57ae17865e0279fcf2a0fb 280 Pfam PF01551 Peptidase family M23 175 269 6.8E-31 T 12-10-2018 IPR016047 Peptidase M23 R615_11175 938f00956b57ae17865e0279fcf2a0fb 280 Gene3D G3DSA:2.60.40.1590 26 119 5.1E-23 T 12-10-2018 R615_11175 938f00956b57ae17865e0279fcf2a0fb 280 Gene3D G3DSA:2.70.70.10 120 275 1.6E-50 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_11175 938f00956b57ae17865e0279fcf2a0fb 280 SUPERFAMILY SSF51261 103 271 7.98E-51 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_04230 1b07748d29816f7c221485958fbe60fb 124 SMART SM00834 1 41 5.4E-9 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain R615_04230 1b07748d29816f7c221485958fbe60fb 124 Pfam PF09723 Zinc ribbon domain 1 39 5.1E-11 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain R615_04230 1b07748d29816f7c221485958fbe60fb 124 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 42 1.2E-12 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 32 175 5.2E-62 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 3 196 41.873 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 Gene3D G3DSA:3.30.230.40 1 90 6.7E-37 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 SUPERFAMILY SSF54211 89 179 5.18E-34 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 SUPERFAMILY SSF54211 3 87 1.02E-33 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 Gene3D G3DSA:3.30.230.40 91 196 5.6E-38 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 62 75 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 R615_01620 1a895655d0699e2c40585f5dcef79e1d 196 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 157 169 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 Pfam PF00467 KOW motif 126 156 1.7E-8 T 12-10-2018 IPR005824 KOW R615_16240 396d12b3055836cdfc7965ca00f52a41 178 SUPERFAMILY SSF82679 3 113 5.23E-41 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 2.3E-70 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 SMART SM00738 2 111 4.8E-51 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 Gene3D G3DSA:2.30.30.30 120 176 1.7E-23 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 SMART SM00739 123 150 1.7E-5 T 12-10-2018 IPR005824 KOW R615_16240 396d12b3055836cdfc7965ca00f52a41 178 Pfam PF02357 Transcription termination factor nusG 3 108 1.4E-27 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 SUPERFAMILY SSF50104 121 176 2.21E-18 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily R615_16240 396d12b3055836cdfc7965ca00f52a41 178 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 23.744 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 6.7E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 6.7E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 6.7E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 Gene3D G3DSA:3.30.70.940 1 119 2.8E-48 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 R615_16240 396d12b3055836cdfc7965ca00f52a41 178 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 12-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 12-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 Gene3D G3DSA:1.10.455.10 2 155 5.6E-62 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 1.2E-68 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 PIRSF PIRSF002122 2 156 5.8E-60 T 12-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.098 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 SUPERFAMILY SSF47973 6 149 7.19E-61 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily R615_16200 100f066c0749919c6cc15bfc8d254c7c 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.1E-66 T 12-10-2018 IPR023798 Ribosomal protein S7 domain R615_16060 ed2bd289c8fd81297605667c85e92551 333 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 227 7.3E-24 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 SUPERFAMILY SSF55257 6 232 1.67E-31 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 328 8.0E-35 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 SUPERFAMILY SSF47789 250 324 5.1E-26 T 12-10-2018 R615_16060 ed2bd289c8fd81297605667c85e92551 333 Gene3D G3DSA:3.30.1360.10 17 227 6.0E-81 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 Gene3D G3DSA:2.170.120.12 53 176 6.0E-81 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 Gene3D G3DSA:1.10.150.20 243 328 1.7E-37 T 12-10-2018 R615_16060 ed2bd289c8fd81297605667c85e92551 333 SMART SM00662 23 233 4.5E-95 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 SUPERFAMILY SSF56553 53 177 1.7E-39 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 315 5.7E-108 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 307 5.0E-24 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 64 154 4.2E-22 T 12-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_16060 ed2bd289c8fd81297605667c85e92551 333 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 316 34.854 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_00050 ca46e9819c2958661881e23e91e1c5b6 276 PIRSF PIRSF007580 2 276 3.8E-63 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_00050 ca46e9819c2958661881e23e91e1c5b6 276 Pfam PF10118 Predicted metal-dependent hydrolase 14 259 1.4E-71 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_08775 4989df9f0c77969f6a4902d237587cd6 179 PIRSF PIRSF029557 1 176 5.3E-42 T 12-10-2018 IPR010707 Protein of unknown function DUF1285 R615_08775 4989df9f0c77969f6a4902d237587cd6 179 Gene3D G3DSA:2.30.270.10 94 155 8.2E-6 T 12-10-2018 IPR023361 DUF1285, beta-roll domain superfamily R615_08775 4989df9f0c77969f6a4902d237587cd6 179 Pfam PF06938 Protein of unknown function (DUF1285) 42 163 6.3E-35 T 12-10-2018 IPR010707 Protein of unknown function DUF1285 R615_08775 4989df9f0c77969f6a4902d237587cd6 179 Gene3D G3DSA:3.10.540.10 2 92 1.4E-32 T 12-10-2018 R615_12930 67f379aa9394602458e8eed23ec452ae 280 Pfam PF10118 Predicted metal-dependent hydrolase 14 259 2.8E-80 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_12930 67f379aa9394602458e8eed23ec452ae 280 PIRSF PIRSF007580 1 277 1.1E-70 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_09950 bd919ffd8a1ff18a89b346a4701b910e 119 Gene3D G3DSA:1.10.10.60 14 102 7.1E-8 T 12-10-2018 R615_09950 bd919ffd8a1ff18a89b346a4701b910e 119 Pfam PF01527 Transposase 11 94 5.5E-15 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 R615_09950 bd919ffd8a1ff18a89b346a4701b910e 119 SUPERFAMILY SSF46689 10 107 5.38E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_11955 6c0ba991ee8faedade127d40956f03f6 230 Gene3D G3DSA:2.60.40.420 53 145 2.9E-10 T 12-10-2018 IPR008972 Cupredoxin R615_11955 6c0ba991ee8faedade127d40956f03f6 230 SUPERFAMILY SSF49503 49 145 1.28E-15 T 12-10-2018 IPR008972 Cupredoxin R615_08515 15a56f11fd4ac30f88e1ccd1daa40c13 235 Pfam PF07314 Protein of unknown function (DUF1461) 10 201 3.8E-13 T 12-10-2018 IPR010178 Integral membrane protein 1906 R615_01715 4c780f444d91deab777da6cedc929e1b 172 PIRSF PIRSF028301 1 172 9.3E-65 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 R615_01715 4c780f444d91deab777da6cedc929e1b 172 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 10 162 8.6E-61 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 R615_01715 4c780f444d91deab777da6cedc929e1b 172 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 7 162 1.2E-61 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 R615_02710 96e30ef57846a00e3e1097abc2f099a1 470 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 96 348 3.8E-18 T 12-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT R615_02710 96e30ef57846a00e3e1097abc2f099a1 470 PIRSF PIRSF016636 1 470 7.3E-141 T 12-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB R615_02710 96e30ef57846a00e3e1097abc2f099a1 470 PIRSF PIRSF500217 1 470 1.4E-143 T 12-10-2018 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 R615_10800 e4e7f6b31764aa3254fe8fb4fd4f4193 162 Pfam PF13690 Chemotaxis phosphatase CheX 42 139 5.2E-17 T 12-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain R615_10800 e4e7f6b31764aa3254fe8fb4fd4f4193 162 Gene3D G3DSA:3.40.1550.10 1 152 7.4E-37 T 12-10-2018 IPR028976 CheC-like superfamily R615_10800 e4e7f6b31764aa3254fe8fb4fd4f4193 162 SUPERFAMILY SSF103039 1 150 1.31E-26 T 12-10-2018 IPR028976 CheC-like superfamily R615_17075 23a4d230adca75ef52f30ade4117799b 246 Pfam PF00440 Bacterial regulatory proteins, tetR family 35 81 1.5E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_17075 23a4d230adca75ef52f30ade4117799b 246 SUPERFAMILY SSF46689 25 104 2.14E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_17075 23a4d230adca75ef52f30ade4117799b 246 Gene3D G3DSA:1.10.357.10 25 225 7.9E-41 T 12-10-2018 R615_17075 23a4d230adca75ef52f30ade4117799b 246 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 48 6.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_17075 23a4d230adca75ef52f30ade4117799b 246 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 56 79 6.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_14530 cdbbe2bf8f8e8cf4d51a453bd532a436 66 Gene3D G3DSA:1.10.10.60 3 62 4.2E-15 T 12-10-2018 R615_14530 cdbbe2bf8f8e8cf4d51a453bd532a436 66 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 39 55 1.6E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_14530 cdbbe2bf8f8e8cf4d51a453bd532a436 66 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 24 39 1.6E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_14530 cdbbe2bf8f8e8cf4d51a453bd532a436 66 SMART SM00342 2 55 4.1E-4 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_14530 cdbbe2bf8f8e8cf4d51a453bd532a436 66 SUPERFAMILY SSF46689 10 59 2.69E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_14530 cdbbe2bf8f8e8cf4d51a453bd532a436 66 Pfam PF12833 Helix-turn-helix domain 8 56 1.3E-13 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_02075 16439858c38c69886bb2ae4c7ddf66fb 486 Pfam PF00575 S1 RNA binding domain 41 101 2.5E-5 T 12-10-2018 IPR003029 S1 domain GO:0003676 R615_02075 16439858c38c69886bb2ae4c7ddf66fb 486 SUPERFAMILY SSF50249 42 119 1.82E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold R615_02075 16439858c38c69886bb2ae4c7ddf66fb 486 Pfam PF10150 Ribonuclease E/G family 117 390 5.3E-102 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 R615_02075 16439858c38c69886bb2ae4c7ddf66fb 486 SMART SM00316 40 114 1.1E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_02075 16439858c38c69886bb2ae4c7ddf66fb 486 Gene3D G3DSA:2.40.50.140 34 119 2.2E-27 T 12-10-2018 R615_02075 16439858c38c69886bb2ae4c7ddf66fb 486 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 16 423 2.7E-155 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 R615_13505 03bc4f932f8fe02decffc3dd92cc036f 710 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 262 704 4.8E-18 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit R615_06110 2384e0b9c56aa3605d793382997e47ec 605 Gene3D G3DSA:3.40.50.1820 239 529 1.0E-9 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_06110 2384e0b9c56aa3605d793382997e47ec 605 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 106 278 2.6E-72 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 R615_06110 2384e0b9c56aa3605d793382997e47ec 605 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 63 597 1.5E-231 T 12-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 R615_06110 2384e0b9c56aa3605d793382997e47ec 605 SUPERFAMILY SSF53474 235 529 8.73E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11455 4f0f285ec823bef0cc00b3096bbe90de 74 Pfam PF11197 Protein of unknown function (DUF2835) 5 72 3.5E-26 T 12-10-2018 IPR021363 Protein of unknown function DUF2835 R615_00880 6526b2461ee319fc5e68b5cc8d199958 77 Gene3D G3DSA:3.90.940.10 1 77 4.8E-28 T 12-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 R615_00880 6526b2461ee319fc5e68b5cc8d199958 77 SUPERFAMILY SSF63562 1 71 1.31E-24 T 12-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 R615_00880 6526b2461ee319fc5e68b5cc8d199958 77 Pfam PF01192 RNA polymerase Rpb6 8 60 1.3E-18 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 R615_00880 6526b2461ee319fc5e68b5cc8d199958 77 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.62 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_00880 6526b2461ee319fc5e68b5cc8d199958 77 SMART SM01409 8 61 1.0E-18 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 R615_00880 6526b2461ee319fc5e68b5cc8d199958 77 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 9.1E-27 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 9.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 9.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 9.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 Gene3D G3DSA:3.40.50.720 8 257 1.7E-61 T 12-10-2018 R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 Pfam PF00106 short chain dehydrogenase 8 189 2.5E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_11030 e97ea0c9ebffa51b2c369aefebb7b88a 280 SUPERFAMILY SSF51735 8 270 2.84E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_04265 9aae0410e39b96d01842f5d02bec97b9 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 19 294 4.6E-47 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 R615_04265 9aae0410e39b96d01842f5d02bec97b9 308 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 16 307 8.4E-121 T 12-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type R615_00590 161740af768bb0b9d2c6c2e73006ab06 181 SUPERFAMILY SSF55821 3 178 1.62E-47 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily R615_00590 161740af768bb0b9d2c6c2e73006ab06 181 Pfam PF01300 Telomere recombination 13 174 6.1E-37 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 R615_00590 161740af768bb0b9d2c6c2e73006ab06 181 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 181 35.313 T 12-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 R615_00590 161740af768bb0b9d2c6c2e73006ab06 181 Gene3D G3DSA:3.90.870.10 1 181 1.0E-52 T 12-10-2018 R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 SUPERFAMILY SSF53271 2 157 2.56E-32 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 292 4.3E-55 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 SUPERFAMILY SSF53271 106 296 1.7E-23 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 Gene3D G3DSA:3.40.50.2020 145 286 9.1E-69 T 12-10-2018 R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 SMART SM01400 1 116 5.6E-29 T 12-10-2018 R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 Pfam PF00156 Phosphoribosyl transferase domain 133 243 5.0E-12 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 Gene3D G3DSA:3.40.50.2020 8 294 9.1E-69 T 12-10-2018 R615_04110 83cbec1ee1b77e19a1ea442a9bc38832 297 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 114 2.8E-16 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 R615_13450 8e611ee7345696ff6fc064ebbb7ef5b6 221 Pfam PF04367 Protein of unknown function (DUF502) 56 160 9.9E-21 T 12-10-2018 IPR007462 Protein of unknown function DUF502 R615_06225 6aaf3f01a466d05babe175f01ecd3f34 383 Gene3D G3DSA:3.30.1890.10 109 336 2.4E-17 T 12-10-2018 R615_06225 6aaf3f01a466d05babe175f01ecd3f34 383 Pfam PF02706 Chain length determinant protein 12 56 5.5E-7 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 R615_06225 6aaf3f01a466d05babe175f01ecd3f34 383 Pfam PF13807 G-rich domain on putative tyrosine kinase 323 358 2.4E-7 T 12-10-2018 IPR032807 Tyrosine kinase, G-rich domain R615_06225 6aaf3f01a466d05babe175f01ecd3f34 383 SUPERFAMILY SSF160355 96 325 5.76E-22 T 12-10-2018 R615_02815 c318acf5976acaa4bedced537e2ac249 536 PRINTS PR00811 Bacterial general secretion pathway protein D signature 267 277 6.5E-18 T 12-10-2018 IPR001775 GspD/PilQ family R615_02815 c318acf5976acaa4bedced537e2ac249 536 PRINTS PR00811 Bacterial general secretion pathway protein D signature 500 514 6.5E-18 T 12-10-2018 IPR001775 GspD/PilQ family R615_02815 c318acf5976acaa4bedced537e2ac249 536 PRINTS PR00811 Bacterial general secretion pathway protein D signature 331 355 6.5E-18 T 12-10-2018 IPR001775 GspD/PilQ family R615_02815 c318acf5976acaa4bedced537e2ac249 536 PRINTS PR00811 Bacterial general secretion pathway protein D signature 477 495 6.5E-18 T 12-10-2018 IPR001775 GspD/PilQ family R615_02815 c318acf5976acaa4bedced537e2ac249 536 Pfam PF07655 Secretin N-terminal domain 150 236 1.1E-20 T 12-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 R615_02815 c318acf5976acaa4bedced537e2ac249 536 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 232 512 6.2E-82 T 12-10-2018 IPR013358 Pilus biogenesis, MshL R615_02815 c318acf5976acaa4bedced537e2ac249 536 SMART SM00965 98 146 4.6E-4 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 R615_02815 c318acf5976acaa4bedced537e2ac249 536 Pfam PF00263 Bacterial type II and III secretion system protein 335 513 2.6E-43 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 R615_02815 c318acf5976acaa4bedced537e2ac249 536 Gene3D G3DSA:3.55.50.30 69 153 4.2E-10 T 12-10-2018 R615_10665 c1cf078d1f527eac6b7fb126fc1e9557 203 Pfam PF12915 Protein of unknown function (DUF3833) 27 192 3.4E-52 T 12-10-2018 IPR024409 Protein of unknown function DUF3833 R615_07640 346c47c85d51556bf172282cb8fb870e 220 SUPERFAMILY SSF55961 18 202 5.5E-36 T 12-10-2018 R615_07640 346c47c85d51556bf172282cb8fb870e 220 Pfam PF01852 START domain 24 202 3.0E-14 T 12-10-2018 IPR002913 START domain GO:0008289 R615_07640 346c47c85d51556bf172282cb8fb870e 220 Gene3D G3DSA:3.30.530.20 23 213 1.4E-57 T 12-10-2018 IPR023393 START-like domain superfamily R615_07640 346c47c85d51556bf172282cb8fb870e 220 PIRSF PIRSF039033 3 220 1.2E-59 T 12-10-2018 IPR028347 START domain-containing protein R615_00040 7243fbd10b518e9c9ab5e8e2da24b87d 262 SUPERFAMILY SSF53474 11 258 3.19E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00040 7243fbd10b518e9c9ab5e8e2da24b87d 262 Gene3D G3DSA:3.40.50.1820 95 259 2.2E-24 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00040 7243fbd10b518e9c9ab5e8e2da24b87d 262 Pfam PF00561 alpha/beta hydrolase fold 84 172 1.9E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14300 7fc33d54ac6c9d940c61ff45e3e7f0ac 223 SUPERFAMILY SSF48452 148 222 5.27E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_14300 7fc33d54ac6c9d940c61ff45e3e7f0ac 223 Pfam PF07719 Tetratricopeptide repeat 179 211 7.1E-6 T 12-10-2018 IPR013105 Tetratricopeptide repeat 2 R615_14300 7fc33d54ac6c9d940c61ff45e3e7f0ac 223 SMART SM00028 179 212 9.1E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_14300 7fc33d54ac6c9d940c61ff45e3e7f0ac 223 SMART SM00028 145 178 420.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_14300 7fc33d54ac6c9d940c61ff45e3e7f0ac 223 Gene3D G3DSA:1.25.40.10 110 223 1.1E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_10315 6fd4494129e9bae17187756236b2f5a8 210 SUPERFAMILY SSF52540 3 204 4.85E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10315 6fd4494129e9bae17187756236b2f5a8 210 Gene3D G3DSA:3.40.50.300 2 194 3.5E-24 T 12-10-2018 R615_14770 5873ceb5200e2c04da0f601e920c6ac5 158 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 87.666 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 R615_14770 5873ceb5200e2c04da0f601e920c6ac5 158 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 6.6E-68 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 R615_14770 5873ceb5200e2c04da0f601e920c6ac5 158 Pfam PF03477 ATP cone domain 50 136 4.3E-16 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 R615_09765 fe4c94f3b35c78463d5c7626a9f2717f 172 Pfam PF03473 MOSC domain 59 160 8.2E-9 T 12-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 R615_09765 fe4c94f3b35c78463d5c7626a9f2717f 172 SUPERFAMILY SSF50800 18 163 3.03E-32 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily R615_09765 fe4c94f3b35c78463d5c7626a9f2717f 172 Gene3D G3DSA:2.40.33.20 14 169 2.7E-20 T 12-10-2018 R615_00225 ba3a251115db2c7ac34426e1cc8801a6 355 Pfam PF03088 Strictosidine synthase 151 235 2.4E-19 T 12-10-2018 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 R615_00225 ba3a251115db2c7ac34426e1cc8801a6 355 Gene3D G3DSA:2.120.10.30 46 355 1.6E-65 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_00225 ba3a251115db2c7ac34426e1cc8801a6 355 SUPERFAMILY SSF63829 39 353 6.05E-45 T 12-10-2018 R615_01985 987275c78d91c66414ad980754e3e9ee 83 Gene3D G3DSA:3.40.1620.10 1 40 7.2E-18 T 12-10-2018 R615_01985 987275c78d91c66414ad980754e3e9ee 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 4.0E-24 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM R615_01985 987275c78d91c66414ad980754e3e9ee 83 SUPERFAMILY SSF143120 1 81 4.58E-26 T 12-10-2018 IPR036165 YefM-like superfamily R615_01985 987275c78d91c66414ad980754e3e9ee 83 Gene3D G3DSA:1.10.1220.170 41 83 1.7E-18 T 12-10-2018 R615_01985 987275c78d91c66414ad980754e3e9ee 83 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 56 6.4E-12 T 12-10-2018 R615_03060 295366837e92ede2338d9327cd0c7530 333 Gene3D G3DSA:3.40.190.170 60 318 4.9E-11 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_07600 6248a074933a131771fb6a06d126fba6 562 Pfam PF01740 STAS domain 448 555 5.6E-18 T 12-10-2018 IPR002645 STAS domain R615_07600 6248a074933a131771fb6a06d126fba6 562 SUPERFAMILY SSF52091 446 559 6.87E-18 T 12-10-2018 IPR036513 STAS domain superfamily R615_07600 6248a074933a131771fb6a06d126fba6 562 TIGRFAM TIGR00815 sulP: sulfate permease 6 555 1.3E-119 T 12-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 R615_07600 6248a074933a131771fb6a06d126fba6 562 Gene3D G3DSA:3.30.750.24 426 560 4.3E-26 T 12-10-2018 IPR036513 STAS domain superfamily R615_07600 6248a074933a131771fb6a06d126fba6 562 Pfam PF00916 Sulfate permease family 17 396 9.0E-88 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 R615_07365 3153ce025bc9ef50b386f8080eec5906 187 Pfam PF14065 Protein of unknown function (DUF4255) 9 176 1.1E-28 T 12-10-2018 IPR025351 Protein of unknown function DUF4255 R615_05535 ef18f79a8058d79a7910f47f751670b3 267 SUPERFAMILY SSF69593 70 258 3.14E-6 T 12-10-2018 R615_05535 ef18f79a8058d79a7910f47f751670b3 267 SMART SM00563 76 197 1.1E-4 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_05535 ef18f79a8058d79a7910f47f751670b3 267 Pfam PF01553 Acyltransferase 70 193 7.2E-7 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_00440 a43190866c7d409f7ff8cf5c897d4633 88 Pfam PF07615 YKOF-related Family 5 57 2.1E-5 T 12-10-2018 IPR011522 Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative R615_00440 a43190866c7d409f7ff8cf5c897d4633 88 SUPERFAMILY SSF89957 1 77 3.53E-18 T 12-10-2018 IPR029756 MTH1187/YkoF-like R615_00440 a43190866c7d409f7ff8cf5c897d4633 88 Gene3D G3DSA:3.30.70.930 1 75 6.2E-14 T 12-10-2018 IPR029756 MTH1187/YkoF-like R615_11505 986983682f1df3798f70a87af8a42fb6 328 Pfam PF03773 Predicted permease 25 320 1.5E-61 T 12-10-2018 IPR005524 Predicted permease DUF318 R615_10535 748a072985833be80d1bef3d9c00b595 243 Gene3D G3DSA:1.10.10.1320 1 97 9.0E-5 T 12-10-2018 R615_10535 748a072985833be80d1bef3d9c00b595 243 Pfam PF10099 Anti-sigma-K factor rskA 60 231 6.3E-19 T 12-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 R615_10285 ba567af837f11b4dcd27acfed7b2e3ac 80 SUPERFAMILY SSF47598 5 45 1.56E-7 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 R615_10285 ba567af837f11b4dcd27acfed7b2e3ac 80 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 4 71 1.3E-27 T 12-10-2018 IPR022789 Antitoxin ParD R615_10285 ba567af837f11b4dcd27acfed7b2e3ac 80 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 1 79 1.0E-31 T 12-10-2018 IPR022789 Antitoxin ParD R615_10285 ba567af837f11b4dcd27acfed7b2e3ac 80 Gene3D G3DSA:1.10.8.1250 10 80 9.4E-24 T 12-10-2018 IPR038296 Antitoxin ParD superfamily R615_08905 4529752fac62b0af4587035492acd888 117 Gene3D G3DSA:3.30.70.120 1 108 6.9E-15 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal R615_08905 4529752fac62b0af4587035492acd888 117 SMART SM00938 6 100 6.7E-6 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_08905 4529752fac62b0af4587035492acd888 117 Pfam PF00543 Nitrogen regulatory protein P-II 6 95 7.0E-8 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 R615_08905 4529752fac62b0af4587035492acd888 117 SUPERFAMILY SSF54913 5 100 3.81E-16 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta R615_08505 1bc764a0b255e4767cd62a1829cb59a1 261 Gene3D G3DSA:3.40.50.1820 2 260 1.4E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08505 1bc764a0b255e4767cd62a1829cb59a1 261 Pfam PF12697 Alpha/beta hydrolase family 9 250 3.8E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08505 1bc764a0b255e4767cd62a1829cb59a1 261 SUPERFAMILY SSF53474 6 256 5.91E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_01615 a599cb023903793377d9f1682b443e73 139 Gene3D G3DSA:3.40.630.30 2 137 2.1E-23 T 12-10-2018 R615_01615 a599cb023903793377d9f1682b443e73 139 Pfam PF12568 Acetyltransferase (GNAT) domain 2 132 4.2E-17 T 12-10-2018 IPR000182 GNAT domain R615_01615 a599cb023903793377d9f1682b443e73 139 SUPERFAMILY SSF55729 9 133 4.43E-10 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_12170 cb5e8b3b0bd9e005b850be58989b2382 206 Gene3D G3DSA:2.60.120.590 8 203 2.4E-61 T 12-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily R615_12170 cb5e8b3b0bd9e005b850be58989b2382 206 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 18 196 8.1E-28 T 12-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like R615_12170 cb5e8b3b0bd9e005b850be58989b2382 206 SUPERFAMILY SSF51197 12 198 1.02E-59 T 12-10-2018 R615_15120 d56fa719ba425b0421b881aa631cab09 204 SUPERFAMILY SSF142695 3 172 3.14E-66 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_15120 d56fa719ba425b0421b881aa631cab09 204 Gene3D G3DSA:3.40.50.10990 2 174 4.1E-75 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_15120 d56fa719ba425b0421b881aa631cab09 204 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 6.4E-83 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_15120 d56fa719ba425b0421b881aa631cab09 204 Pfam PF00925 GTP cyclohydrolase II 8 169 1.1E-68 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_15120 d56fa719ba425b0421b881aa631cab09 204 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 46.419 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 R615_16615 bb03f6ef8dc4825f0cc6cee4faaf8f75 252 Pfam PF04338 Protein of unknown function, DUF481 46 252 4.1E-61 T 12-10-2018 IPR007433 Protein of unknown function DUF481 R615_00705 67ff1e3b7a60ad3272704c61e6630815 131 Pfam PF03061 Thioesterase superfamily 29 103 5.6E-11 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_00705 67ff1e3b7a60ad3272704c61e6630815 131 SUPERFAMILY SSF54637 11 131 2.75E-28 T 12-10-2018 IPR029069 HotDog domain superfamily R615_00705 67ff1e3b7a60ad3272704c61e6630815 131 Gene3D G3DSA:3.10.129.10 1 131 1.2E-30 T 12-10-2018 R615_03610 61b5c8377b1fb7dbc722192feb0feb48 417 Gene3D G3DSA:3.40.50.150 137 409 1.8E-103 T 12-10-2018 R615_03610 61b5c8377b1fb7dbc722192feb0feb48 417 PIRSF PIRSF003085 18 415 2.6E-121 T 12-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 R615_03610 61b5c8377b1fb7dbc722192feb0feb48 417 SUPERFAMILY SSF53335 19 359 6.82E-89 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_03610 61b5c8377b1fb7dbc722192feb0feb48 417 Pfam PF02353 Mycolic acid cyclopropane synthetase 132 396 7.6E-83 T 12-10-2018 R615_02855 1df121546c2b6934df80eb75fb21cdff 160 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 3.8E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02855 1df121546c2b6934df80eb75fb21cdff 160 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_02855 1df121546c2b6934df80eb75fb21cdff 160 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 25 3.2E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_11100 3fcb9cf522a4446e617a1c1022a4f2be 356 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 342 1.7E-105 T 12-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 R615_11100 3fcb9cf522a4446e617a1c1022a4f2be 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 342 3.5E-68 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 R615_00445 70f0c602300cb34a0a052f4204d65e30 695 SUPERFAMILY SSF56935 24 695 6.59E-100 T 12-10-2018 R615_00445 70f0c602300cb34a0a052f4204d65e30 695 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 149 2.5E-16 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_00445 70f0c602300cb34a0a052f4204d65e30 695 Pfam PF00593 TonB dependent receptor 232 693 1.4E-20 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel R615_00445 70f0c602300cb34a0a052f4204d65e30 695 Gene3D G3DSA:2.40.170.20 37 695 5.0E-127 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_15780 12d6effb3b2747edec1ff4031e399e73 552 Pfam PF03321 GH3 auxin-responsive promoter 28 529 2.5E-87 T 12-10-2018 IPR004993 GH3 family Reactome: R-HSA-6798695 R615_05215 c39d069633e160d9ccbd386418ebad4e 258 Pfam PF01311 Bacterial export proteins, family 1 15 245 4.9E-65 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 R615_05215 c39d069633e160d9ccbd386418ebad4e 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 255 3.7E-67 T 12-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 R615_05215 c39d069633e160d9ccbd386418ebad4e 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 7.9E-27 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 R615_05215 c39d069633e160d9ccbd386418ebad4e 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 7.9E-27 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 R615_05215 c39d069633e160d9ccbd386418ebad4e 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 7.9E-27 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 R615_05215 c39d069633e160d9ccbd386418ebad4e 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 7.9E-27 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 R615_00510 5ec3dbe90c011fe2464433e77bb94051 189 Gene3D G3DSA:2.160.10.10 1 189 3.1E-62 T 12-10-2018 R615_00510 5ec3dbe90c011fe2464433e77bb94051 189 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 138 2.3E-7 T 12-10-2018 IPR001451 Hexapeptide repeat R615_00510 5ec3dbe90c011fe2464433e77bb94051 189 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 19 54 2.1E-6 T 12-10-2018 IPR001451 Hexapeptide repeat R615_00510 5ec3dbe90c011fe2464433e77bb94051 189 SUPERFAMILY SSF51161 12 182 1.08E-45 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_03220 9934fa69e01c58201ce554e293ff86ef 80 Pfam PF04325 Protein of unknown function (DUF465) 30 77 9.8E-16 T 12-10-2018 IPR007420 Protein of unknown function DUF465 R615_03220 9934fa69e01c58201ce554e293ff86ef 80 Gene3D G3DSA:1.20.58.660 12 80 6.2E-24 T 12-10-2018 R615_16560 8e60e4cc123413f185784d35cc0d6019 132 Pfam PF06339 Ectoine synthase 1 125 1.9E-61 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 R615_16560 8e60e4cc123413f185784d35cc0d6019 132 Gene3D G3DSA:2.60.120.10 1 115 8.6E-48 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_16560 8e60e4cc123413f185784d35cc0d6019 132 Hamap MF_01255 L-ectoine synthase [ectC]. 1 127 38.199 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 R615_16560 8e60e4cc123413f185784d35cc0d6019 132 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 117 5.0E-45 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 R615_16560 8e60e4cc123413f185784d35cc0d6019 132 SUPERFAMILY SSF51182 18 126 8.91E-21 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_05270 1ecb0df0937fcbd91bfe8cbec6908b17 260 Gene3D G3DSA:3.40.50.300 1 257 1.9E-61 T 12-10-2018 R615_05270 1ecb0df0937fcbd91bfe8cbec6908b17 260 SUPERFAMILY SSF52540 2 252 2.31E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_05270 1ecb0df0937fcbd91bfe8cbec6908b17 260 Pfam PF13614 AAA domain 2 180 3.6E-44 T 12-10-2018 IPR025669 AAA domain R615_12310 12c1d525c6d3bc4c7f983e4538d3b8c9 140 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 100 2.5E-17 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_12310 12c1d525c6d3bc4c7f983e4538d3b8c9 140 SUPERFAMILY SSF55083 1 101 1.83E-20 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_12310 12c1d525c6d3bc4c7f983e4538d3b8c9 140 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 101 1.6E-17 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_12310 12c1d525c6d3bc4c7f983e4538d3b8c9 140 Gene3D G3DSA:3.30.70.560 2 116 2.7E-21 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 R615_03315 018815cf46b8b0d41f3e7bca7953b822 1191 Pfam PF05567 Neisseria PilC beta-propeller domain 698 948 1.7E-19 T 12-10-2018 IPR008707 PilC beta-propeller domain R615_03315 018815cf46b8b0d41f3e7bca7953b822 1191 SUPERFAMILY SSF50998 664 1086 5.41E-8 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily R615_15335 8aa5f96e3e0cc0c912ae8dcfdba68896 217 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 11 208 19.008 T 12-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 R615_15335 8aa5f96e3e0cc0c912ae8dcfdba68896 217 Pfam PF01794 Ferric reductase like transmembrane component 61 174 4.4E-15 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain R615_13730 b74fd86b9cd8642d4a206c2e5a893bc0 223 Pfam PF06912 Protein of unknown function (DUF1275) 14 209 1.5E-30 T 12-10-2018 IPR010699 Protein of unknown function DUF1275 R615_04860 fd4479a6f17c9b9e6d00106d11a76324 250 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 54 229 1.4E-51 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 R615_04860 fd4479a6f17c9b9e6d00106d11a76324 250 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 58 228 8.1E-56 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 R615_14840 02aec414fa92f1264f8ff3abe13af913 284 Pfam PF00106 short chain dehydrogenase 7 199 6.7E-50 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 R615_14840 02aec414fa92f1264f8ff3abe13af913 284 SUPERFAMILY SSF51735 1 274 7.75E-65 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 9.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 9.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 9.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 9.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 9.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR R615_14840 02aec414fa92f1264f8ff3abe13af913 284 Gene3D G3DSA:3.40.50.720 1 281 9.3E-70 T 12-10-2018 R615_10330 0c654789ecd8067d0a65ed43ce33b8f0 216 Pfam PF06080 Protein of unknown function (DUF938) 21 212 5.0E-58 T 12-10-2018 IPR010342 Protein of unknown function DUF938 R615_10330 0c654789ecd8067d0a65ed43ce33b8f0 216 Gene3D G3DSA:3.40.50.150 13 208 2.3E-14 T 12-10-2018 R615_10330 0c654789ecd8067d0a65ed43ce33b8f0 216 SUPERFAMILY SSF53335 31 203 5.21E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_10505 ae235c19f4ce241fa274b46d56020653 348 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 3 338 25.348 T 12-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 R615_10505 ae235c19f4ce241fa274b46d56020653 348 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 337 3.1E-118 T 12-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 R615_10505 ae235c19f4ce241fa274b46d56020653 348 Pfam PF03116 NQR2, RnfD, RnfE family 7 336 1.8E-101 T 12-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 R615_01820 7eebacc83fb92a677b09982868fa096f 162 Pfam PF05638 Type VI secretion system effector, Hcp 4 135 5.8E-31 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp R615_01820 7eebacc83fb92a677b09982868fa096f 162 SUPERFAMILY SSF141452 2 160 1.07E-36 T 12-10-2018 IPR036624 Hcp1-like superfamily R615_01820 7eebacc83fb92a677b09982868fa096f 162 Gene3D G3DSA:2.30.110.20 1 161 3.0E-39 T 12-10-2018 IPR036624 Hcp1-like superfamily R615_04575 ed1669f0796f7800d594c663a4b23253 704 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 261 698 3.4E-20 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit R615_11520 fd81d3574559506c4e8eb12e2ebccfd6 230 Pfam PF00117 Glutamine amidotransferase class-I 41 178 3.4E-21 T 12-10-2018 IPR017926 Glutamine amidotransferase R615_11520 fd81d3574559506c4e8eb12e2ebccfd6 230 Gene3D G3DSA:3.40.50.880 1 230 2.0E-60 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_11520 fd81d3574559506c4e8eb12e2ebccfd6 230 SUPERFAMILY SSF52317 1 209 1.78E-53 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 Pfam PF17284 Spermidine synthase tetramerisation domain 13 57 5.3E-15 T 12-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 Pfam PF01564 Spermine/spermidine synthase domain 60 240 6.8E-61 T 12-10-2018 R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 5 284 39.456 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 12-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 Gene3D G3DSA:3.40.50.150 55 284 1.1E-77 T 12-10-2018 R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 Gene3D G3DSA:2.30.140.10 1 54 3.4E-17 T 12-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 SUPERFAMILY SSF53335 6 281 3.41E-88 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_00090 d8e7fda659a2bb73de6a397c821ecdc9 284 TIGRFAM TIGR00417 speE: spermidine synthase 14 278 6.3E-104 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 R615_03250 2e640b0bcab881680eba3af8298912f6 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 8.8E-44 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03250 2e640b0bcab881680eba3af8298912f6 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 7.3E-41 T 12-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03250 2e640b0bcab881680eba3af8298912f6 103 SUPERFAMILY SSF141091 1 101 1.06E-39 T 12-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_03250 2e640b0bcab881680eba3af8298912f6 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 12-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 R615_03250 2e640b0bcab881680eba3af8298912f6 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.644 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_01345 6f5badbf1ca8ee43e60e9bb8f44bc182 329 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 49 179 4.6E-61 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 R615_01345 6f5badbf1ca8ee43e60e9bb8f44bc182 329 Gene3D G3DSA:1.10.8.300 212 318 4.4E-24 T 12-10-2018 R615_01345 6f5badbf1ca8ee43e60e9bb8f44bc182 329 SMART SM00382 46 187 4.3E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_01345 6f5badbf1ca8ee43e60e9bb8f44bc182 329 Gene3D G3DSA:3.40.50.300 9 211 6.7E-44 T 12-10-2018 R615_01345 6f5badbf1ca8ee43e60e9bb8f44bc182 329 SUPERFAMILY SSF52540 37 293 9.95E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01345 6f5badbf1ca8ee43e60e9bb8f44bc182 329 PIRSF PIRSF002849 2 323 4.7E-118 T 12-10-2018 R615_01440 a317d9a7b9e366c0084920aac559001a 141 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 2 141 6.5E-46 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 R615_01440 a317d9a7b9e366c0084920aac559001a 141 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 141 2.2E-54 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 R615_01440 a317d9a7b9e366c0084920aac559001a 141 PIRSF PIRSF004638 1 141 2.4E-56 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 R615_07750 9d1762b9125f362f779fadb82e9b641c 93 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 4.5E-8 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain R615_07750 9d1762b9125f362f779fadb82e9b641c 93 Gene3D G3DSA:3.30.70.100 3 92 3.7E-10 T 12-10-2018 R615_07750 9d1762b9125f362f779fadb82e9b641c 93 SUPERFAMILY SSF54909 1 89 1.07E-14 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel R615_16235 81b574e4318efe5c007c563f22a56783 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-14 T 12-10-2018 R615_16235 81b574e4318efe5c007c563f22a56783 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 7.1E-65 T 12-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 R615_16235 81b574e4318efe5c007c563f22a56783 144 SUPERFAMILY SSF54747 3 73 5.1E-30 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily R615_16235 81b574e4318efe5c007c563f22a56783 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 7.0E-23 T 12-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 R615_16235 81b574e4318efe5c007c563f22a56783 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.1E-29 T 12-10-2018 IPR020784 Ribosomal protein L11, N-terminal R615_16235 81b574e4318efe5c007c563f22a56783 144 SUPERFAMILY SSF46906 68 141 1.44E-24 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily R615_16235 81b574e4318efe5c007c563f22a56783 144 Gene3D G3DSA:3.30.1550.10 2 72 5.6E-34 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily R615_16235 81b574e4318efe5c007c563f22a56783 144 SMART SM00649 9 141 1.7E-82 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 R615_16235 81b574e4318efe5c007c563f22a56783 144 Gene3D G3DSA:1.10.10.2720 73 144 1.4E-26 T 12-10-2018 R615_16235 81b574e4318efe5c007c563f22a56783 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.304 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 R615_07445 d3a258c74af700a4eeb3345dad2cbde0 278 Gene3D G3DSA:1.10.10.60 162 268 2.1E-15 T 12-10-2018 R615_07445 d3a258c74af700a4eeb3345dad2cbde0 278 SMART SM00342 176 262 3.7E-4 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07445 d3a258c74af700a4eeb3345dad2cbde0 278 Pfam PF12833 Helix-turn-helix domain 184 263 1.4E-12 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_06340 1791d413b80db49260ec8d48856d3805 132 Gene3D G3DSA:2.60.120.10 1 132 3.0E-52 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_06340 1791d413b80db49260ec8d48856d3805 132 Pfam PF05523 WxcM-like, C-terminal 5 131 3.0E-51 T 12-10-2018 IPR008894 WxcM-like, C-terminal KEGG: 00523+5.3.2.3|MetaCyc: PWY-6953|MetaCyc: PWY-7688 R615_06340 1791d413b80db49260ec8d48856d3805 132 SUPERFAMILY SSF51182 5 129 8.06E-44 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_11210 ee64b5bfd500af28025e58aca63d2ae7 305 Gene3D G3DSA:2.60.120.10 162 260 8.9E-67 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_11210 ee64b5bfd500af28025e58aca63d2ae7 305 Gene3D G3DSA:2.60.120.10 34 285 8.9E-67 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_11210 ee64b5bfd500af28025e58aca63d2ae7 305 PIRSF PIRSF006232 18 298 5.9E-82 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 R615_11210 ee64b5bfd500af28025e58aca63d2ae7 305 Pfam PF05726 Pirin C-terminal cupin domain 193 289 1.9E-20 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 R615_11210 ee64b5bfd500af28025e58aca63d2ae7 305 Pfam PF02678 Pirin 35 140 2.2E-32 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 R615_11210 ee64b5bfd500af28025e58aca63d2ae7 305 SUPERFAMILY SSF51182 24 302 9.54E-74 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_10455 97c2ca82dd4075491b09cfdc0ee96b7c 484 PIRSF PIRSF006247 1 484 3.4E-146 T 12-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 R615_10455 97c2ca82dd4075491b09cfdc0ee96b7c 484 Pfam PF02386 Cation transport protein 47 478 2.8E-54 T 12-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 Pfam PF08245 Mur ligase middle domain 49 188 3.6E-9 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 SUPERFAMILY SSF53623 7 275 4.45E-73 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 SUPERFAMILY SSF53244 285 408 3.2E-16 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 Gene3D G3DSA:3.90.190.20 287 423 7.0E-16 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 TIGRFAM TIGR01499 folC: bifunctional protein FolC 28 408 7.1E-81 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 PIRSF PIRSF001563 1 419 2.5E-85 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 R615_09825 b836c5878dfc2ff8be0e5beb8226228c 430 Gene3D G3DSA:3.40.1190.10 1 286 1.1E-78 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 R615_03150 24c31a0d33413aafae2873475acdc0f7 328 SMART SM00267 159 326 2.6E-7 T 12-10-2018 IPR000160 GGDEF domain R615_03150 24c31a0d33413aafae2873475acdc0f7 328 Pfam PF00990 Diguanylate cyclase, GGDEF domain 170 309 2.3E-16 T 12-10-2018 IPR000160 GGDEF domain R615_03150 24c31a0d33413aafae2873475acdc0f7 328 SUPERFAMILY SSF55073 176 308 7.45E-15 T 12-10-2018 IPR029787 Nucleotide cyclase R615_03150 24c31a0d33413aafae2873475acdc0f7 328 Gene3D G3DSA:3.30.70.270 164 326 2.0E-21 T 12-10-2018 R615_03150 24c31a0d33413aafae2873475acdc0f7 328 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 168 319 7.9E-15 T 12-10-2018 IPR000160 GGDEF domain R615_15705 8b4ac6c804f0c30b1e182edc2430c4e8 344 Gene3D G3DSA:3.40.50.300 1 195 5.7E-45 T 12-10-2018 R615_15705 8b4ac6c804f0c30b1e182edc2430c4e8 344 SUPERFAMILY SSF52540 3 164 1.36E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15705 8b4ac6c804f0c30b1e182edc2430c4e8 344 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 4 171 4.6E-39 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain R615_08145 24bdc4ed487243f0a589a1bf626bd5a5 187 Pfam PF09335 SNARE associated Golgi protein 33 145 1.1E-13 T 12-10-2018 IPR032816 SNARE associated Golgi protein R615_13895 26b4ca501ee14f67a7bf7bddc7bf60d9 263 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 8 259 3.3E-32 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 R615_13895 26b4ca501ee14f67a7bf7bddc7bf60d9 263 Pfam PF02654 Cobalamin-5-phosphate synthase 11 257 1.0E-49 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 R615_13895 26b4ca501ee14f67a7bf7bddc7bf60d9 263 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 263 41.657 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 R615_10200 6d37d8de99464d408d7b90c5caa2ddbc 397 Gene3D G3DSA:3.40.190.10 108 232 5.5E-122 T 12-10-2018 R615_10200 6d37d8de99464d408d7b90c5caa2ddbc 397 Gene3D G3DSA:3.40.190.10 22 368 5.5E-122 T 12-10-2018 R615_10200 6d37d8de99464d408d7b90c5caa2ddbc 397 Pfam PF13379 NMT1-like family 17 277 6.2E-77 T 12-10-2018 R615_10200 6d37d8de99464d408d7b90c5caa2ddbc 397 SUPERFAMILY SSF53850 19 275 4.16E-26 T 12-10-2018 R615_11130 b3668a5a481d78cb9bef8743be343a98 921 Pfam PF13505 Outer membrane protein beta-barrel domain 733 899 2.1E-9 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel R615_11130 b3668a5a481d78cb9bef8743be343a98 921 Gene3D G3DSA:2.60.40.10 85 159 1.4E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11130 b3668a5a481d78cb9bef8743be343a98 921 Gene3D G3DSA:2.60.40.10 7 77 4.9E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11130 b3668a5a481d78cb9bef8743be343a98 921 Gene3D G3DSA:2.60.40.10 167 242 5.7E-12 T 12-10-2018 IPR013783 Immunoglobulin-like fold R615_11130 b3668a5a481d78cb9bef8743be343a98 921 Gene3D G3DSA:2.40.160.20 750 916 2.6E-8 T 12-10-2018 R615_11130 b3668a5a481d78cb9bef8743be343a98 921 SUPERFAMILY SSF56925 749 911 6.54E-9 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel R615_08045 fe7041768046e73f37d71f2e15be4a40 258 PIRSF PIRSF006648 1 255 2.0E-22 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 R615_08045 fe7041768046e73f37d71f2e15be4a40 258 Pfam PF01061 ABC-2 type transporter 11 219 2.8E-36 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 R615_08045 fe7041768046e73f37d71f2e15be4a40 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 140 164 9.4E-13 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 R615_08045 fe7041768046e73f37d71f2e15be4a40 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 104 129 9.4E-13 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 R615_08045 fe7041768046e73f37d71f2e15be4a40 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 60 82 9.4E-13 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 R615_08045 fe7041768046e73f37d71f2e15be4a40 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 178 197 9.4E-13 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 R615_08045 fe7041768046e73f37d71f2e15be4a40 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 198 217 9.4E-13 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 R615_01690 51b626d02493610c5b9f3058e2b24a00 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 3.3E-155 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 R615_01690 51b626d02493610c5b9f3058e2b24a00 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 1.3E-154 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 60 5.2E-19 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 155 1.6E-59 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 35.721 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 76 0.005 T 12-10-2018 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 Pfam PF01467 Cytidylyltransferase-like 5 133 3.1E-20 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 Gene3D G3DSA:3.40.50.620 1 160 1.8E-57 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 SUPERFAMILY SSF52374 1 155 1.69E-44 T 12-10-2018 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 7.7E-49 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 7.7E-49 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 7.7E-49 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 7.7E-49 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_00985 7b6032bc9765b78df1590ca3eafdcf77 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 7.7E-49 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 R615_15810 3fdc2ee807d053088490848ef8eb59d7 321 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 19 318 1.2E-103 T 12-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent R615_15810 3fdc2ee807d053088490848ef8eb59d7 321 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 18 316 8.3E-117 T 12-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 R615_15810 3fdc2ee807d053088490848ef8eb59d7 321 Gene3D G3DSA:3.40.50.150 45 218 2.1E-45 T 12-10-2018 R615_15810 3fdc2ee807d053088490848ef8eb59d7 321 SUPERFAMILY SSF53335 33 308 1.03E-10 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_15810 3fdc2ee807d053088490848ef8eb59d7 321 PIRSF PIRSF018005 1 320 1.7E-111 T 12-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 R615_00020 75259299b1d344413d008de9e750a875 510 Pfam PF07693 KAP family P-loop domain 25 284 2.4E-37 T 12-10-2018 IPR011646 KAP family P-loop domain R615_00020 75259299b1d344413d008de9e750a875 510 SUPERFAMILY SSF52540 45 278 9.98E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_16370 1d59c7bea2af21034a8a2feeba04eb37 258 Gene3D G3DSA:3.40.50.150 3 212 1.4E-24 T 12-10-2018 R615_16370 1d59c7bea2af21034a8a2feeba04eb37 258 SUPERFAMILY SSF53335 9 256 2.76E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_16370 1d59c7bea2af21034a8a2feeba04eb37 258 Pfam PF08241 Methyltransferase domain 50 143 3.0E-10 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 R615_06075 7cae159cef6b8c8e7452667387647792 293 Pfam PF16234 Domain of unknown function (DUF4892) 61 176 2.9E-15 T 12-10-2018 IPR032608 Protein of unknown function DUF4892 R615_03655 b26eb6594b561c9f31dc39ce0321b114 133 SUPERFAMILY SSF53800 8 126 1.57E-26 T 12-10-2018 R615_03655 b26eb6594b561c9f31dc39ce0321b114 133 Gene3D G3DSA:3.40.50.1400 6 130 4.6E-28 T 12-10-2018 R615_03655 b26eb6594b561c9f31dc39ce0321b114 133 Pfam PF01903 CbiX 15 123 5.1E-24 T 12-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 R615_11995 553bf154d4a564855948e2f1fb7649fe 369 SUPERFAMILY SSF56935 18 369 4.12E-32 T 12-10-2018 R615_04600 28026fd7168cb40e1acf489e5fcf9b7f 106 Gene3D G3DSA:3.30.110.70 1 106 1.3E-31 T 12-10-2018 R615_04600 28026fd7168cb40e1acf489e5fcf9b7f 106 SUPERFAMILY SSF117782 1 105 8.63E-36 T 12-10-2018 IPR035439 UPF0145 domain superfamily R615_04600 28026fd7168cb40e1acf489e5fcf9b7f 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 24.772 T 12-10-2018 IPR002765 Uncharacterised protein family UPF0145 R615_04600 28026fd7168cb40e1acf489e5fcf9b7f 106 Pfam PF01906 Putative heavy-metal-binding 1 102 1.4E-37 T 12-10-2018 IPR002765 Uncharacterised protein family UPF0145 R615_06010 72a8594d385495c5aba612f57259d00b 804 Pfam PF06934 Fatty acid cis/trans isomerase (CTI) 113 803 4.9E-279 T 12-10-2018 IPR010706 Fatty acid cis-trans isomerase R615_04630 feb293853d195d069015c15752290737 296 Pfam PF12146 Serine aminopeptidase, S33 26 258 4.8E-11 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 R615_04630 feb293853d195d069015c15752290737 296 SUPERFAMILY SSF53474 5 293 7.24E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_06835 ca55092dfeef51c2a87b9cf38644e890 404 Pfam PF12704 MacB-like periplasmic core domain 22 240 2.6E-24 T 12-10-2018 IPR025857 MacB-like periplasmic core domain R615_06835 ca55092dfeef51c2a87b9cf38644e890 404 Pfam PF02687 FtsX-like permease family 306 392 4.4E-9 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 R615_11380 47f7e407c58aa62f3df81130b854a789 382 SUPERFAMILY SSF52151 4 290 5.23E-49 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase R615_11380 47f7e407c58aa62f3df81130b854a789 382 Gene3D G3DSA:3.40.1090.10 1 139 1.4E-21 T 12-10-2018 R615_11380 47f7e407c58aa62f3df81130b854a789 382 Pfam PF01734 Patatin-like phospholipase 8 220 3.0E-24 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 R615_06620 f8ae0c338c79c552e9e2962fa524df70 254 Pfam PF00535 Glycosyl transferase family 2 17 177 7.1E-27 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 R615_06620 f8ae0c338c79c552e9e2962fa524df70 254 Gene3D G3DSA:3.90.550.10 3 250 7.1E-38 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_06620 f8ae0c338c79c552e9e2962fa524df70 254 SUPERFAMILY SSF53448 13 238 4.5E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_16905 2fa27c8469536dd046fa02b83a69c53c 70 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 5 68 1.4E-18 T 12-10-2018 IPR012662 Conserved hypothetical protein CHP02449 R615_06575 84fe0f575f317e25f4bb9fdf65a5a8a6 284 Pfam PF04116 Fatty acid hydroxylase superfamily 89 223 7.8E-28 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 R615_05700 b3f1ecad98d2324ca362f2dcd3bf6c29 101 Pfam PF07045 Domain of unknown function (DUF1330) 6 83 6.0E-7 T 12-10-2018 IPR010753 Domain of unknown function DUF1330 R615_05700 b3f1ecad98d2324ca362f2dcd3bf6c29 101 SUPERFAMILY SSF54909 1 94 2.95E-11 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel R615_05700 b3f1ecad98d2324ca362f2dcd3bf6c29 101 Gene3D G3DSA:3.30.70.100 5 94 7.1E-10 T 12-10-2018 R615_06675 694b69df3a647756cb9fd544f7096f71 531 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 72 225 4.3E-9 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like R615_17465 ece265182a89a45255c0188c76f5dbda 462 Gene3D G3DSA:3.40.50.150 98 341 1.4E-94 T 12-10-2018 R615_17465 ece265182a89a45255c0188c76f5dbda 462 Gene3D G3DSA:1.10.260.140 29 96 1.4E-18 T 12-10-2018 R615_17465 ece265182a89a45255c0188c76f5dbda 462 Pfam PF00145 C-5 cytosine-specific DNA methylase 99 456 6.1E-80 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 R615_17465 ece265182a89a45255c0188c76f5dbda 462 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 438 456 - T 12-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 R615_17465 ece265182a89a45255c0188c76f5dbda 462 Gene3D G3DSA:3.90.120.10 366 447 5.6E-9 T 12-10-2018 R615_17465 ece265182a89a45255c0188c76f5dbda 462 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 101 456 3.7E-102 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 R615_17465 ece265182a89a45255c0188c76f5dbda 462 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 229 243 6.5E-17 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 R615_17465 ece265182a89a45255c0188c76f5dbda 462 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 100 116 6.5E-17 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 R615_17465 ece265182a89a45255c0188c76f5dbda 462 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 283 296 6.5E-17 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 R615_17465 ece265182a89a45255c0188c76f5dbda 462 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 181 193 - T 12-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 R615_17465 ece265182a89a45255c0188c76f5dbda 462 SUPERFAMILY SSF53335 99 459 6.84E-84 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_14790 b20bc078d247a5555cabed2efb59f0cd 158 SUPERFAMILY SSF52121 6 156 1.31E-60 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14790 b20bc078d247a5555cabed2efb59f0cd 158 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 17 152 3.9E-54 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14790 b20bc078d247a5555cabed2efb59f0cd 158 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 17 153 7.8E-57 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14790 b20bc078d247a5555cabed2efb59f0cd 158 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 11 156 30.912 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_14790 b20bc078d247a5555cabed2efb59f0cd 158 Gene3D G3DSA:3.40.50.960 4 158 4.3E-60 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 R615_12120 6b5505ef0bbc56d8ba89bbbc622e2df6 159 Pfam PF14539 Domain of unknown function (DUF4442) 13 152 1.7E-21 T 12-10-2018 IPR027961 Protein of unknown function DUF4442 R615_12120 6b5505ef0bbc56d8ba89bbbc622e2df6 159 Gene3D G3DSA:3.10.129.10 16 158 1.3E-29 T 12-10-2018 R615_12120 6b5505ef0bbc56d8ba89bbbc622e2df6 159 SUPERFAMILY SSF54637 23 156 8.96E-22 T 12-10-2018 IPR029069 HotDog domain superfamily R615_10265 3c88f579dc5c43815673b5d967f6cd77 138 Gene3D G3DSA:3.40.630.30 3 129 1.2E-19 T 12-10-2018 R615_10265 3c88f579dc5c43815673b5d967f6cd77 138 SUPERFAMILY SSF55729 14 124 1.69E-15 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_10265 3c88f579dc5c43815673b5d967f6cd77 138 Pfam PF13673 Acetyltransferase (GNAT) domain 34 122 4.7E-12 T 12-10-2018 IPR000182 GNAT domain R615_11115 78c2d87ed91346ad9482cd1d11543499 220 SUPERFAMILY SSF55469 1 218 1.83E-43 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 R615_11115 78c2d87ed91346ad9482cd1d11543499 220 Gene3D G3DSA:3.40.109.10 1 216 8.4E-60 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 R615_11115 78c2d87ed91346ad9482cd1d11543499 220 Pfam PF00881 Nitroreductase family 8 195 1.6E-28 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 R615_03330 51da772edf3d35a4f710f7e42e200fca 186 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 27 7.8E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_03330 51da772edf3d35a4f710f7e42e200fca 186 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 5 153 4.9E-17 T 12-10-2018 IPR013362 Pilus modification type IV, PilV R615_10650 bc9ec00e13bdf056e8a96f93cc52f41d 178 SUPERFAMILY SSF46689 4 79 5.34E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_10650 bc9ec00e13bdf056e8a96f93cc52f41d 178 Gene3D G3DSA:1.10.357.10 3 176 2.7E-21 T 12-10-2018 R615_10650 bc9ec00e13bdf056e8a96f93cc52f41d 178 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 63 3.2E-17 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_10650 bc9ec00e13bdf056e8a96f93cc52f41d 178 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.9E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_10650 bc9ec00e13bdf056e8a96f93cc52f41d 178 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.9E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 R615_02910 6ad00a4a174d272dee037760854cea9b 124 Pfam PF04247 Invasion gene expression up-regulator, SirB 3 116 3.7E-33 T 12-10-2018 IPR007360 Invasion gene expression up-regulator, SirB R615_02910 6ad00a4a174d272dee037760854cea9b 124 PIRSF PIRSF005610 1 115 3.5E-22 T 12-10-2018 IPR007360 Invasion gene expression up-regulator, SirB R615_00135 3251137c08cc6ea5a89f82b11d717695 210 Gene3D G3DSA:3.40.50.1820 17 207 2.8E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00135 3251137c08cc6ea5a89f82b11d717695 210 SUPERFAMILY SSF53474 19 208 9.09E-15 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_00135 3251137c08cc6ea5a89f82b11d717695 210 Pfam PF05728 Uncharacterised protein family (UPF0227) 19 202 8.2E-49 T 12-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA R615_06865 6d9a02833c84afb9cae4db02040a90a3 180 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 180 2.0E-61 T 12-10-2018 IPR018636 Protein of unknown function DUF2058 R615_06840 8ff7778031695bb4a38df921c0437208 224 SMART SM00382 30 217 3.3E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_06840 8ff7778031695bb4a38df921c0437208 224 Pfam PF00005 ABC transporter 21 169 4.2E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_06840 8ff7778031695bb4a38df921c0437208 224 Gene3D G3DSA:3.40.50.300 1 224 1.0E-62 T 12-10-2018 R615_06840 8ff7778031695bb4a38df921c0437208 224 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 R615_06840 8ff7778031695bb4a38df921c0437208 224 SUPERFAMILY SSF52540 1 222 5.32E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04960 9f8c1f36794fb5555994b24733eeb7de 99 Pfam PF01909 Nucleotidyltransferase domain 13 85 2.7E-7 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 R615_04960 9f8c1f36794fb5555994b24733eeb7de 99 SUPERFAMILY SSF81301 11 92 2.8E-13 T 12-10-2018 R615_04960 9f8c1f36794fb5555994b24733eeb7de 99 Gene3D G3DSA:3.30.460.10 1 99 2.3E-19 T 12-10-2018 R615_12965 042ae97c455aecab4173896ffe42cac8 374 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 187 289 4.3E-7 T 12-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 R615_12965 042ae97c455aecab4173896ffe42cac8 374 Gene3D G3DSA:3.40.720.10 17 366 1.4E-23 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 R615_12965 042ae97c455aecab4173896ffe42cac8 374 SUPERFAMILY SSF53649 21 359 1.96E-22 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 R615_06555 65085a3a1e174f4a2f4d55b215b9ae91 370 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 2 366 50.367 T 12-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 R615_06555 65085a3a1e174f4a2f4d55b215b9ae91 370 SUPERFAMILY SSF52821 15 135 9.4E-18 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_06555 65085a3a1e174f4a2f4d55b215b9ae91 370 SMART SM00450 3 133 8.8E-5 T 12-10-2018 IPR001763 Rhodanese-like domain R615_06555 65085a3a1e174f4a2f4d55b215b9ae91 370 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 16 351 1.1E-103 T 12-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 R615_06555 65085a3a1e174f4a2f4d55b215b9ae91 370 Gene3D G3DSA:3.40.250.10 10 134 1.9E-30 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily R615_11820 d031f525340eeb8ad57ffd6dea38437a 83 SUPERFAMILY SSF52833 1 76 2.69E-10 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11820 d031f525340eeb8ad57ffd6dea38437a 83 Gene3D G3DSA:3.40.30.10 2 83 1.6E-17 T 12-10-2018 R615_11820 d031f525340eeb8ad57ffd6dea38437a 83 Pfam PF05768 Glutaredoxin-like domain (DUF836) 4 74 1.9E-12 T 12-10-2018 IPR008554 Glutaredoxin-like R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 SUPERFAMILY SSF46785 5 119 6.9E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 Gene3D G3DSA:3.40.190.290 98 297 1.3E-71 T 12-10-2018 R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 Pfam PF03466 LysR substrate binding domain 96 297 2.0E-47 T 12-10-2018 IPR005119 LysR, substrate-binding R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 SUPERFAMILY SSF53850 97 300 1.81E-49 T 12-10-2018 R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 8.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 8.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 8.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 9.3E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 R615_03590 c8f4359a47fba0afd6a08d67d681ed37 322 Gene3D G3DSA:1.10.10.10 9 96 8.3E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_16015 c32a983b573ac6d1ec82d28c0a28e100 526 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 4.1E-172 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 R615_16015 c32a983b573ac6d1ec82d28c0a28e100 526 PIRSF PIRSF006446 341 525 1.5E-32 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 R615_16015 c32a983b573ac6d1ec82d28c0a28e100 526 PIRSF PIRSF006446 2 336 7.2E-115 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 R615_08965 148801bc40a385227d46e046dbeca238 327 Pfam PF05275 Copper resistance protein B precursor (CopB) 123 327 1.0E-83 T 12-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 Gene3D G3DSA:2.40.30.160 188 302 3.9E-24 T 12-10-2018 R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 178 243 1.8E-23 T 12-10-2018 IPR017703 YgfZ/GcvT conserved site R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 Gene3D G3DSA:3.30.70.1400 34 120 1.4E-28 T 12-10-2018 R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 SUPERFAMILY SSF103025 30 234 3.45E-52 T 12-10-2018 R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 Pfam PF01571 Aminomethyltransferase folate-binding domain 34 140 7.7E-11 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 Gene3D G3DSA:3.30.70.1630 32 185 1.4E-28 T 12-10-2018 R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 PIRSF PIRSF006487 146 291 7.2 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 R615_12825 cd6955608bce2ad9ff598a1dd0e85890 312 PIRSF PIRSF006487 27 154 4.8E-9 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 R615_16595 394b26daf81151903568ba35521e74e6 406 PIRSF PIRSF020818 1 406 2.5E-175 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase R615_16595 394b26daf81151903568ba35521e74e6 406 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 404 3.4E-166 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase R615_16595 394b26daf81151903568ba35521e74e6 406 Pfam PF06850 PHB de-polymerase C-terminus 204 405 2.3E-88 T 12-10-2018 IPR009656 PHB de-polymerase, C-terminal R615_16595 394b26daf81151903568ba35521e74e6 406 SUPERFAMILY SSF53474 97 403 8.17E-28 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09015 2eaf3d430ec3061b0fa8c30aba7648b3 459 SUPERFAMILY SSF56954 9 434 6.41E-58 T 12-10-2018 R615_09015 2eaf3d430ec3061b0fa8c30aba7648b3 459 Gene3D G3DSA:1.20.1600.10 26 441 2.0E-56 T 12-10-2018 R615_09015 2eaf3d430ec3061b0fa8c30aba7648b3 459 Pfam PF02321 Outer membrane efflux protein 254 435 2.0E-24 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_09015 2eaf3d430ec3061b0fa8c30aba7648b3 459 Pfam PF02321 Outer membrane efflux protein 34 217 2.2E-13 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_04470 63e34465c8e5a2e0ced8ac3879dfcdc9 241 Gene3D G3DSA:3.40.50.620 13 241 1.1E-53 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold R615_04470 63e34465c8e5a2e0ced8ac3879dfcdc9 241 SUPERFAMILY SSF52402 28 209 1.05E-36 T 12-10-2018 R615_04470 63e34465c8e5a2e0ced8ac3879dfcdc9 241 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 55 220 3.0E-27 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 R615_04470 63e34465c8e5a2e0ced8ac3879dfcdc9 241 PIRSF PIRSF000857 7 241 1.7E-56 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 R615_08230 e2f9c79cc66487880199650dd2697687 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 135 1.5E-30 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_08210 c375546cf57fe469409eb8c38a71ef05 228 SMART SM00382 36 225 1.6E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_08210 c375546cf57fe469409eb8c38a71ef05 228 Gene3D G3DSA:3.40.50.300 5 225 5.8E-61 T 12-10-2018 R615_08210 c375546cf57fe469409eb8c38a71ef05 228 SUPERFAMILY SSF52540 8 222 3.08E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08210 c375546cf57fe469409eb8c38a71ef05 228 Pfam PF00005 ABC transporter 28 175 2.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 R615_09255 aec7f0ece83e6ec91c859f4c09a2621b 444 Pfam PF07586 Protein of unknown function (DUF1552) 43 352 5.9E-101 T 12-10-2018 IPR011447 Protein of unknown function DUF1552 R615_13655 6182643c901fadf9d89af6940e445f8d 174 SUPERFAMILY SSF54637 23 133 8.96E-13 T 12-10-2018 IPR029069 HotDog domain superfamily R615_13655 6182643c901fadf9d89af6940e445f8d 174 Gene3D G3DSA:3.10.129.10 27 148 1.7E-7 T 12-10-2018 R615_13655 6182643c901fadf9d89af6940e445f8d 174 Pfam PF13279 Thioesterase-like superfamily 35 136 9.7E-6 T 12-10-2018 R615_09280 5f4f87bb425397be95ac998a1649ee07 346 Pfam PF13177 DNA polymerase III, delta subunit 21 178 1.2E-47 T 12-10-2018 R615_09280 5f4f87bb425397be95ac998a1649ee07 346 Gene3D G3DSA:3.40.50.300 16 179 2.3E-54 T 12-10-2018 R615_09280 5f4f87bb425397be95ac998a1649ee07 346 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 28 213 2.7E-63 T 12-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 R615_09280 5f4f87bb425397be95ac998a1649ee07 346 SUPERFAMILY SSF52540 18 216 2.0E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10880 4c6efff06953181d96873eecd09760fb 191 Pfam PF08378 Nuclease-related domain 32 147 1.8E-27 T 12-10-2018 IPR011528 Nuclease-related domain, NERD R615_04170 52c7fb9a9f4413a592b875ff9af8dc9c 81 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 9 77 3.4E-16 T 12-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 R615_04170 52c7fb9a9f4413a592b875ff9af8dc9c 81 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 81 27.325 T 12-10-2018 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3 R615_04170 52c7fb9a9f4413a592b875ff9af8dc9c 81 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 6 80 1.7E-16 T 12-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 R615_14565 d22ea3129ddcf3bbd5e29c531acc8e5a 282 Pfam PF10118 Predicted metal-dependent hydrolase 9 256 1.8E-73 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_14565 d22ea3129ddcf3bbd5e29c531acc8e5a 282 PIRSF PIRSF007580 4 276 1.5E-63 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_10140 556f09a3067b91bd5e4d00eeafd436f5 163 Gene3D G3DSA:3.30.530.20 8 160 3.0E-11 T 12-10-2018 IPR023393 START-like domain superfamily R615_10140 556f09a3067b91bd5e4d00eeafd436f5 163 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 10 49 9.5E-7 T 12-10-2018 IPR019587 Polyketide cyclase/dehydrase R615_10140 556f09a3067b91bd5e4d00eeafd436f5 163 SUPERFAMILY SSF55961 11 158 1.79E-11 T 12-10-2018 R615_16040 5f6849ee18473b7c47abb6a4bed47c57 160 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 149 1.4E-23 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ R615_16850 83e7803c1c1cff994cb44b6b587da6af 180 SUPERFAMILY SSF55166 63 179 4.91E-32 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 R615_16850 83e7803c1c1cff994cb44b6b587da6af 180 Gene3D G3DSA:3.30.1380.10 65 180 8.3E-14 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 R615_16850 83e7803c1c1cff994cb44b6b587da6af 180 Pfam PF05951 Bacterial protein of unknown function (DUF882) 29 178 2.4E-57 T 12-10-2018 IPR010275 Protein of unknown function DUF882 R615_16850 83e7803c1c1cff994cb44b6b587da6af 180 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 29 1.6E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal R615_14280 e50acb493587d124112e2867536bec68 586 Pfam PF05787 Bacterial protein of unknown function (DUF839) 234 577 1.3E-37 T 12-10-2018 IPR008557 Protein of unknown function DUF839 R615_10935 0e88cf9a33beb01566f45a9cd935f710 245 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 43 238 5.1E-40 T 12-10-2018 IPR006214 Bax inhibitor 1-related R615_05240 cccfe56cfd792a3dd50ef7a82c3cdc2b 272 Gene3D G3DSA:3.40.50.300 7 248 1.7E-61 T 12-10-2018 R615_05240 cccfe56cfd792a3dd50ef7a82c3cdc2b 272 PIRSF PIRSF003092 1 271 5.3E-83 T 12-10-2018 IPR025501 ATP binding protein MinD R615_05240 cccfe56cfd792a3dd50ef7a82c3cdc2b 272 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 7 246 6.2E-26 T 12-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 R615_05240 cccfe56cfd792a3dd50ef7a82c3cdc2b 272 SUPERFAMILY SSF52540 7 260 4.4E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_12190 d37bad33bcbc1cd42e6d60625e9482ff 288 SUPERFAMILY SSF52172 5 120 1.12E-32 T 12-10-2018 IPR011006 CheY-like superfamily R615_12190 d37bad33bcbc1cd42e6d60625e9482ff 288 SMART SM00448 4 117 2.0E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12190 d37bad33bcbc1cd42e6d60625e9482ff 288 Gene3D G3DSA:3.40.50.12740 4 245 5.0E-38 T 12-10-2018 R615_12190 d37bad33bcbc1cd42e6d60625e9482ff 288 Pfam PF00072 Response regulator receiver domain 7 117 1.0E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_12970 6e44cb10d324550a6c1fe9d951bc4093 338 Gene3D G3DSA:3.60.21.70 21 305 3.7E-34 T 12-10-2018 IPR038607 PhoD-like superfamily R615_12970 6e44cb10d324550a6c1fe9d951bc4093 338 Pfam PF09423 PhoD-like phosphatase 38 284 3.2E-17 T 12-10-2018 IPR018946 Alkaline phosphatase D-related R615_12970 6e44cb10d324550a6c1fe9d951bc4093 338 SUPERFAMILY SSF56300 21 275 2.11E-27 T 12-10-2018 R615_09770 61f44ea3012e08b4f972636e4daa0032 355 SUPERFAMILY SSF51430 12 353 2.49E-106 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily R615_09770 61f44ea3012e08b4f972636e4daa0032 355 Pfam PF00248 Aldo/keto reductase family 26 345 3.1E-68 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain R615_09770 61f44ea3012e08b4f972636e4daa0032 355 Gene3D G3DSA:3.20.20.100 12 355 3.2E-131 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily R615_09480 1bb5e0fdf2576548cf6dc27521857bb3 259 Pfam PF09836 Putative DNA-binding domain 9 98 1.1E-26 T 12-10-2018 IPR018640 Putative DNA-binding domain, bacteria R615_09480 1bb5e0fdf2576548cf6dc27521857bb3 259 Gene3D G3DSA:1.10.150.690 38 128 5.9E-29 T 12-10-2018 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 Gene3D G3DSA:3.40.630.10 135 458 3.8E-118 T 12-10-2018 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 SUPERFAMILY SSF53187 144 457 7.53E-104 T 12-10-2018 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 150 448 1.8E-101 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 PRINTS PR00481 Cytosol aminopeptidase signature 245 266 3.9E-42 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 3.9E-42 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 PRINTS PR00481 Cytosol aminopeptidase signature 304 324 3.9E-42 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 PRINTS PR00481 Cytosol aminopeptidase signature 332 347 3.9E-42 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 PRINTS PR00481 Cytosol aminopeptidase signature 223 240 3.9E-42 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 308 315 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 R615_14910 51bf10c9f9af07250d7769c0bd28c2a8 460 Gene3D G3DSA:3.40.220.10 10 132 2.0E-28 T 12-10-2018 R615_07405 b40b165434f05bed1ac7760e1a317cb4 97 Gene3D G3DSA:2.60.200.60 1 54 1.7E-11 T 12-10-2018 R615_07405 b40b165434f05bed1ac7760e1a317cb4 97 Gene3D G3DSA:2.60.200.60 55 96 1.5E-10 T 12-10-2018 R615_07405 b40b165434f05bed1ac7760e1a317cb4 97 Pfam PF05488 PAAR motif 19 87 4.5E-24 T 12-10-2018 IPR008727 PAAR motif R615_07175 62de1cd94044441a73766852417816ef 392 Pfam PF01266 FAD dependent oxidoreductase 19 354 3.9E-29 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 R615_07175 62de1cd94044441a73766852417816ef 392 SUPERFAMILY SSF51905 18 310 2.85E-21 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_07175 62de1cd94044441a73766852417816ef 392 Gene3D G3DSA:3.50.50.60 19 358 9.5E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_07175 62de1cd94044441a73766852417816ef 392 Gene3D G3DSA:3.30.9.10 107 325 9.5E-52 T 12-10-2018 R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 Gene3D G3DSA:2.60.120.10 378 486 3.0E-17 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 Pfam PF00483 Nucleotidyl transferase 3 305 2.3E-63 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 Gene3D G3DSA:3.90.550.10 1 375 3.8E-109 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 Pfam PF01050 Mannose-6-phosphate isomerase 340 490 3.9E-74 T 12-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1 494 5.3E-205 T 12-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 SUPERFAMILY SSF51182 200 494 1.56E-80 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_04940 ec1b5bfab2e17d0e31ac27271b5cb6d7 496 SUPERFAMILY SSF53448 1 299 1.19E-63 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_15230 57d610a79a7822131e8cfabfd77f6f36 482 SUPERFAMILY SSF52540 45 238 1.37E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_15230 57d610a79a7822131e8cfabfd77f6f36 482 Gene3D G3DSA:3.30.70.1070 383 481 4.8E-20 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_15230 57d610a79a7822131e8cfabfd77f6f36 482 Gene3D G3DSA:3.40.50.300 36 176 2.9E-5 T 12-10-2018 R615_15230 57d610a79a7822131e8cfabfd77f6f36 482 Pfam PF13401 AAA domain 49 174 2.6E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_15230 57d610a79a7822131e8cfabfd77f6f36 482 Pfam PF05036 Sporulation related domain 395 472 3.0E-8 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 R615_15960 988f74cccdbdfa574d9bfa2a46cd98d2 186 SUPERFAMILY SSF81342 7 179 1.1E-40 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 R615_15960 988f74cccdbdfa574d9bfa2a46cd98d2 186 Pfam PF01292 Prokaryotic cytochrome b561 12 180 3.5E-33 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 R615_01375 a340fbea17530950037fe6d9bbb8da49 278 Gene3D G3DSA:2.60.120.380 64 155 2.5E-5 T 12-10-2018 R615_00970 e09b275eba981e15e7c8a6e2ad3548c3 248 Pfam PF02698 DUF218 domain 81 238 2.0E-24 T 12-10-2018 IPR003848 Domain of unknown function DUF218 R615_09160 d2dbcb6e585059440315e44e80a0348a 91 Gene3D G3DSA:1.20.58.1000 1 91 3.3E-29 T 12-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily R615_09160 d2dbcb6e585059440315e44e80a0348a 91 Pfam PF02583 Metal-sensitive transcriptional repressor 8 87 2.7E-20 T 12-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 Gene3D G3DSA:1.10.10.10 223 284 9.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 SMART SM00316 151 214 0.005 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 SMART SM00316 3 66 32.0 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 SMART SM00316 69 130 20.0 T 12-10-2018 IPR022967 RNA-binding domain, S1 R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 Gene3D G3DSA:2.40.50.140 154 219 2.3E-9 T 12-10-2018 R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 Pfam PF13509 S1 domain 4 63 7.0E-22 T 12-10-2018 IPR039566 Conserved virulence factor B, S1 domain R615_13600 68f130bf8f3a5b8e1218b0af777aa836 373 Pfam PF13509 S1 domain 75 129 2.5E-8 T 12-10-2018 IPR039566 Conserved virulence factor B, S1 domain R615_15385 8dc8ab37f06b7929f1868a67655f1a9d 399 Pfam PF01764 Lipase (class 3) 81 212 3.1E-20 T 12-10-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 R615_15385 8dc8ab37f06b7929f1868a67655f1a9d 399 SUPERFAMILY SSF53474 63 217 7.31E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_15385 8dc8ab37f06b7929f1868a67655f1a9d 399 Gene3D G3DSA:3.40.50.1820 37 289 9.4E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_07435 33ce38c577f251cfba730ab133c42cc1 1798 Pfam PF13699 Domain of unknown function (DUF4157) 205 282 1.0E-30 T 12-10-2018 IPR025295 Domain of unknown function DUF4157 R615_10420 1e06d92c034e95aa90d7460c05bc642f 1220 Pfam PF13555 P-loop containing region of AAA domain 3 57 4.8E-10 T 12-10-2018 R615_10420 1e06d92c034e95aa90d7460c05bc642f 1220 SUPERFAMILY SSF52540 17 1147 7.71E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_10420 1e06d92c034e95aa90d7460c05bc642f 1220 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1052 1137 2.8E-18 T 12-10-2018 R615_10420 1e06d92c034e95aa90d7460c05bc642f 1220 Gene3D G3DSA:3.40.50.300 864 1170 3.2E-5 T 12-10-2018 R615_10420 1e06d92c034e95aa90d7460c05bc642f 1220 Gene3D G3DSA:3.40.50.300 1 249 2.4E-6 T 12-10-2018 R615_04845 651daa4c8d0ff3aa47303e5b985f3593 319 Pfam PF04932 O-Antigen ligase 143 290 1.0E-7 T 12-10-2018 IPR007016 O-antigen ligase-related R615_11765 8b9f7e81d84567fade97c8548f031172 273 Pfam PF10977 Protein of unknown function (DUF2797) 36 269 3.5E-94 T 12-10-2018 IPR021246 Protein of unknown function DUF2797 R615_11090 2d5382a90404671341a2ba2d947d4f57 148 Pfam PF06271 RDD family 9 135 1.6E-23 T 12-10-2018 IPR010432 RDD R615_01555 cf30298daa44f5677f9938c091696339 327 Pfam PF00487 Fatty acid desaturase 38 275 3.9E-36 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_09275 90a4312bc677c002912ac65197347a84 114 Gene3D G3DSA:2.40.10.220 2 114 7.7E-45 T 12-10-2018 R615_09275 90a4312bc677c002912ac65197347a84 114 Pfam PF07238 PilZ domain 12 102 2.7E-12 T 12-10-2018 IPR009875 PilZ domain GO:0035438 R615_17190 552d15b004e87497f2264c548861f075 390 Gene3D G3DSA:1.25.40.10 67 232 3.0E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_17190 552d15b004e87497f2264c548861f075 390 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 5 386 1.0E-86 T 12-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 R615_17190 552d15b004e87497f2264c548861f075 390 Pfam PF07219 HemY protein N-terminus 27 133 3.0E-30 T 12-10-2018 IPR010817 HemY, N-terminal R615_17190 552d15b004e87497f2264c548861f075 390 SUPERFAMILY SSF48452 89 357 3.79E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_17190 552d15b004e87497f2264c548861f075 390 Gene3D G3DSA:1.25.40.10 234 390 1.8E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_15525 c676db13961284ba25a787cd1289ec3c 170 Pfam PF01618 MotA/TolQ/ExbB proton channel family 59 164 3.8E-20 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_00770 3d945949d39c4442a846ac94c606521b 107 Pfam PF11872 Protein of unknown function (DUF3392) 2 102 4.9E-35 T 12-10-2018 IPR021813 Protein of unknown function DUF3392 R615_07945 04fc2725f30c46b58dd6b237633dba9b 176 Pfam PF14730 Domain of unknown function (DUF4468) with TBP-like fold 45 127 4.8E-10 T 12-10-2018 IPR027823 Domain of unknown function DUF4468 with TBP-like fold R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 SUPERFAMILY SSF47240 5 154 4.87E-45 T 12-10-2018 IPR009078 Ferritin-like superfamily R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 Pfam PF00210 Ferritin-like domain 18 153 2.5E-28 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 62 78 8.3E-11 T 12-10-2018 IPR002177 DNA-binding protein Dps R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 133 151 8.3E-11 T 12-10-2018 IPR002177 DNA-binding protein Dps R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 38 54 8.3E-11 T 12-10-2018 IPR002177 DNA-binding protein Dps R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 ProSitePatterns PS00818 Dps protein family signature 1. 38 54 - T 12-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 ProSitePatterns PS00819 Dps protein family signature 2. 64 78 - T 12-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 PIRSF PIRSF005900 1 156 2.3E-49 T 12-10-2018 IPR002177 DNA-binding protein Dps R615_11345 00e0e136d08ccd6ab4d65063888e2bac 156 Gene3D G3DSA:1.20.1260.10 1 155 3.0E-55 T 12-10-2018 IPR012347 Ferritin-like R615_02975 305adcdcb66ca1f00f4ced3554400a5a 174 Pfam PF04403 Paraquat-inducible protein A 42 161 3.2E-18 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like R615_12350 b5eaacfded65911a5ff71f42b8cf42b0 452 Pfam PF07044 Protein of unknown function (DUF1329) 84 447 1.9E-132 T 12-10-2018 IPR010752 Protein of unknown function DUF1329 R615_02155 616e6fafa0b3aa137714f1564e7a4992 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 1.2E-86 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria R615_02155 616e6fafa0b3aa137714f1564e7a4992 260 Pfam PF02405 Permease MlaE 44 254 3.1E-77 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 R615_06590 aecf31f58d6dad714a8807ce528d7428 282 Gene3D G3DSA:3.40.50.300 1 282 7.5E-57 T 12-10-2018 R615_06590 aecf31f58d6dad714a8807ce528d7428 282 Pfam PF13469 Sulfotransferase family 79 182 2.1E-10 T 12-10-2018 R615_06590 aecf31f58d6dad714a8807ce528d7428 282 SUPERFAMILY SSF52540 8 281 3.64E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_01125 d17bbee48eb7901c8d57d46e5785e614 216 SUPERFAMILY SSF52266 30 210 8.03E-48 T 12-10-2018 R615_01125 d17bbee48eb7901c8d57d46e5785e614 216 Gene3D G3DSA:3.40.50.1110 30 214 2.9E-61 T 12-10-2018 IPR036514 SGNH hydrolase superfamily R615_01125 d17bbee48eb7901c8d57d46e5785e614 216 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 195 5.1E-25 T 12-10-2018 IPR013830 SGNH hydrolase-type esterase domain R615_05955 b33f24d6bb9067ba5ebf24c5e133de2a 264 SUPERFAMILY SSF69572 3 257 1.22E-66 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 R615_05955 b33f24d6bb9067ba5ebf24c5e133de2a 264 Pfam PF00899 ThiF family 16 256 6.9E-40 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 R615_05955 b33f24d6bb9067ba5ebf24c5e133de2a 264 Gene3D G3DSA:3.40.50.720 1 264 1.8E-103 T 12-10-2018 R615_04530 e77421d15a7e4377966a847aa0e418b5 286 SUPERFAMILY SSF52833 105 283 6.46E-24 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_04530 e77421d15a7e4377966a847aa0e418b5 286 Gene3D G3DSA:3.40.30.10 79 284 4.2E-39 T 12-10-2018 R615_04530 e77421d15a7e4377966a847aa0e418b5 286 Pfam PF13098 Thioredoxin-like domain 116 283 6.7E-22 T 12-10-2018 IPR012336 Thioredoxin-like fold R615_12580 16d4fa139ee6c93ad16e55747193a134 377 PIRSF PIRSF015557 1 377 7.6E-138 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 R615_12580 16d4fa139ee6c93ad16e55747193a134 377 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 5 374 5.2E-138 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 R615_12580 16d4fa139ee6c93ad16e55747193a134 377 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 5 374 7.3E-135 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 R615_07535 b85414c1ba1ac9f7dfbab2f30458b63a 367 PIRSF PIRSF015921 5 363 4.5E-75 T 12-10-2018 IPR012171 Fatty acid desaturase GO:0006629|GO:0016021|GO:0016491 R615_07535 b85414c1ba1ac9f7dfbab2f30458b63a 367 Pfam PF00487 Fatty acid desaturase 63 332 3.0E-35 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_05550 76a43c4bdfddbffd95410b6994ed44a2 452 Gene3D G3DSA:1.10.3210.10 185 379 4.0E-31 T 12-10-2018 R615_05550 76a43c4bdfddbffd95410b6994ed44a2 452 SUPERFAMILY SSF52172 17 182 2.28E-32 T 12-10-2018 IPR011006 CheY-like superfamily R615_05550 76a43c4bdfddbffd95410b6994ed44a2 452 Pfam PF00072 Response regulator receiver domain 19 129 5.1E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05550 76a43c4bdfddbffd95410b6994ed44a2 452 Gene3D G3DSA:3.40.50.2300 8 155 2.0E-30 T 12-10-2018 R615_05550 76a43c4bdfddbffd95410b6994ed44a2 452 SMART SM00448 17 129 8.9E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05550 76a43c4bdfddbffd95410b6994ed44a2 452 Pfam PF13487 HD domain 263 324 2.4E-17 T 12-10-2018 R615_03585 f4359148ebc27c7200c8c14cc4195346 276 SUPERFAMILY SSF53335 31 232 6.65E-12 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_03585 f4359148ebc27c7200c8c14cc4195346 276 PIRSF PIRSF031679 2 276 2.0E-91 T 12-10-2018 IPR016980 S-adenosyl-L-methionine dependent methyltransferase, Alr7345, predicted R615_03585 f4359148ebc27c7200c8c14cc4195346 276 Gene3D G3DSA:3.40.50.150 36 235 1.4E-15 T 12-10-2018 R615_08285 c909647352c444681e0fbc7814acb63b 103 Pfam PF13271 Domain of unknown function (DUF4062) 6 87 4.0E-30 T 12-10-2018 IPR025139 Domain of unknown function DUF4062 R615_00365 772d63a4bf2c3a11e790ed01086f4d6d 210 SUPERFAMILY SSF52833 24 204 2.77E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_00365 772d63a4bf2c3a11e790ed01086f4d6d 210 Pfam PF01323 DSBA-like thioredoxin domain 68 187 5.5E-12 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 R615_00365 772d63a4bf2c3a11e790ed01086f4d6d 210 PIRSF PIRSF001488 5 209 3.3E-55 T 12-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL R615_00365 772d63a4bf2c3a11e790ed01086f4d6d 210 Gene3D G3DSA:3.40.30.10 21 209 1.8E-48 T 12-10-2018 R615_14240 00cca8536ad3a277f0176ea03a1c026e 985 Pfam PF12262 Bacterial virulence factor lipase N-terminal 5 291 1.6E-13 T 12-10-2018 IPR025920 Bacterial virulence factor lipase, N-terminal domain R615_14240 00cca8536ad3a277f0176ea03a1c026e 985 SUPERFAMILY SSF53474 543 840 2.45E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_13985 e80f71f9b9efed4844a786b42790bc7b 393 Gene3D G3DSA:3.40.50.12740 1 219 1.7E-10 T 12-10-2018 R615_13985 e80f71f9b9efed4844a786b42790bc7b 393 SUPERFAMILY SSF52172 18 132 1.76E-7 T 12-10-2018 IPR011006 CheY-like superfamily R615_10390 3fa5b48532b4efbac6543952481d5313 391 Pfam PF00487 Fatty acid desaturase 115 329 3.8E-24 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_01610 fba93d49c9a6ea04f765dc597a74b365 209 PIRSF PIRSF004649 1 209 1.3E-41 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC R615_01610 fba93d49c9a6ea04f765dc597a74b365 209 Pfam PF05494 MlaC protein 35 198 1.2E-43 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC R615_01610 fba93d49c9a6ea04f765dc597a74b365 209 Gene3D G3DSA:3.10.450.710 26 206 2.3E-41 T 12-10-2018 R615_17155 58f563835238f0731b86c62a8ff82d06 130 Pfam PF04241 Protein of unknown function (DUF423) 20 106 3.1E-29 T 12-10-2018 IPR006696 Protein of unknown function DUF423 R615_11880 97884707b890ac145eef931166e597a8 121 Gene3D G3DSA:3.40.30.10 36 121 8.8E-7 T 12-10-2018 R615_11880 97884707b890ac145eef931166e597a8 121 Pfam PF00462 Glutaredoxin 47 98 1.3E-5 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 R615_11880 97884707b890ac145eef931166e597a8 121 SUPERFAMILY SSF52833 41 119 2.93E-11 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_11745 febc419612cb74f9854b00ab602516c6 823 Pfam PF03176 MMPL family 633 811 6.5E-15 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_11745 febc419612cb74f9854b00ab602516c6 823 Pfam PF03176 MMPL family 188 424 6.0E-12 T 12-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 R615_11745 febc419612cb74f9854b00ab602516c6 823 Gene3D G3DSA:1.20.1640.10 237 407 4.2E-6 T 12-10-2018 R615_11745 febc419612cb74f9854b00ab602516c6 823 Gene3D G3DSA:1.20.1640.10 627 818 1.8E-13 T 12-10-2018 R615_11745 febc419612cb74f9854b00ab602516c6 823 SUPERFAMILY SSF82866 627 805 7.59E-33 T 12-10-2018 R615_11745 febc419612cb74f9854b00ab602516c6 823 SUPERFAMILY SSF82866 199 394 3.79E-29 T 12-10-2018 R615_04645 4347a8eb4ffd50e839c60af918c7dbcb 325 PIRSF PIRSF034934 1 324 5.5E-64 T 12-10-2018 IPR017034 Abortive infection system protein AbiD/AbiF R615_04645 4347a8eb4ffd50e839c60af918c7dbcb 325 Pfam PF07751 Abi-like protein 33 233 7.8E-55 T 12-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like R615_07025 b76bee8852855716577c7d2bee6e8ed0 206 Gene3D G3DSA:3.30.310.170 84 185 5.2E-6 T 12-10-2018 R615_07025 b76bee8852855716577c7d2bee6e8ed0 206 Pfam PF06804 NlpB/DapX lipoprotein 76 175 3.9E-9 T 12-10-2018 IPR010653 NlpB/DapX lipoprotein R615_10355 38391992482efa2d469069d928c7a87b 371 Gene3D G3DSA:3.40.190.170 95 311 7.5E-17 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_10355 38391992482efa2d469069d928c7a87b 371 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 108 238 4.7E-5 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 R615_06150 409cc337bed80e055f4ebb84722f8374 99 Gene3D G3DSA:3.30.70.1060 1 98 1.3E-35 T 12-10-2018 R615_06150 409cc337bed80e055f4ebb84722f8374 99 SUPERFAMILY SSF54909 1 97 5.9E-30 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel R615_06150 409cc337bed80e055f4ebb84722f8374 99 Pfam PF03795 YCII-related domain 1 95 2.0E-28 T 12-10-2018 IPR005545 YCII-related R615_11255 2406789e2a567747ef69e145ff3cf745 81 Gene3D G3DSA:3.30.110.40 1 77 5.7E-27 T 12-10-2018 IPR036868 TusA-like domain superfamily R615_11255 2406789e2a567747ef69e145ff3cf745 81 SUPERFAMILY SSF64307 3 75 4.32E-23 T 12-10-2018 IPR036868 TusA-like domain superfamily R615_11255 2406789e2a567747ef69e145ff3cf745 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 12-10-2018 IPR001455 TusA-like domain R615_11255 2406789e2a567747ef69e145ff3cf745 81 Pfam PF01206 Sulfurtransferase TusA 7 75 1.2E-23 T 12-10-2018 IPR001455 TusA-like domain R615_13470 c409eb938fca6058f4ebe90d7a4eac90 335 SUPERFAMILY SSF143422 16 191 1.15E-20 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_13470 c409eb938fca6058f4ebe90d7a4eac90 335 SMART SM01321 12 186 7.5E-6 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 R615_00905 a6c2f2e314288801938d39a5115f30e6 259 SUPERFAMILY SSF56219 1 253 1.44E-41 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_00905 a6c2f2e314288801938d39a5115f30e6 259 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 252 2.3E-54 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 R615_00905 a6c2f2e314288801938d39a5115f30e6 259 Gene3D G3DSA:3.60.10.10 1 255 7.0E-56 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily R615_03015 736483330e017b0fcb1e5341d1e7ee48 341 Pfam PF12833 Helix-turn-helix domain 263 339 1.7E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_03015 736483330e017b0fcb1e5341d1e7ee48 341 SUPERFAMILY SSF46689 291 340 8.96E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_03015 736483330e017b0fcb1e5341d1e7ee48 341 Gene3D G3DSA:1.10.10.60 237 341 5.6E-24 T 12-10-2018 R615_03015 736483330e017b0fcb1e5341d1e7ee48 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 213 1.7E-45 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_03015 736483330e017b0fcb1e5341d1e7ee48 341 SMART SM00342 256 338 1.3E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_07885 a5c8bf3d32ea475d6f1f0adc06f2611b 391 Gene3D G3DSA:2.160.20.110 73 267 2.2E-24 T 12-10-2018 R615_07885 a5c8bf3d32ea475d6f1f0adc06f2611b 391 Gene3D G3DSA:2.160.20.110 268 360 4.4E-8 T 12-10-2018 R615_11185 f2b0fe80242161383807269ef6d3a9a8 184 Pfam PF13279 Thioesterase-like superfamily 32 133 3.4E-16 T 12-10-2018 R615_11185 f2b0fe80242161383807269ef6d3a9a8 184 SUPERFAMILY SSF54637 26 138 4.98E-26 T 12-10-2018 IPR029069 HotDog domain superfamily R615_11185 f2b0fe80242161383807269ef6d3a9a8 184 Gene3D G3DSA:3.10.129.10 23 148 6.1E-15 T 12-10-2018 R615_01565 a2da629cfa04cb2870c0b066c3abaa87 178 SUPERFAMILY SSF110997 101 173 1.01E-18 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_01565 a2da629cfa04cb2870c0b066c3abaa87 178 Pfam PF05036 Sporulation related domain 102 172 1.2E-17 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 R615_01565 a2da629cfa04cb2870c0b066c3abaa87 178 Gene3D G3DSA:3.30.70.1070 94 176 4.1E-18 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_01150 3711f59b9cd132d6b7b9fc01dd19b409 111 Pfam PF07027 Protein of unknown function (DUF1318) 21 110 3.3E-27 T 12-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 R615_01150 3711f59b9cd132d6b7b9fc01dd19b409 111 PIRSF PIRSF025560 1 111 2.5E-29 T 12-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 R615_14120 fb3df84b80d3bcabdb6c3a1f4e9473c5 305 SMART SM00422 13 82 8.1E-18 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_14120 fb3df84b80d3bcabdb6c3a1f4e9473c5 305 SUPERFAMILY SSF46955 12 93 1.79E-16 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_14120 fb3df84b80d3bcabdb6c3a1f4e9473c5 305 Pfam PF13411 MerR HTH family regulatory protein 13 81 6.6E-18 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_14120 fb3df84b80d3bcabdb6c3a1f4e9473c5 305 Gene3D G3DSA:1.10.1660.10 8 80 3.0E-25 T 12-10-2018 R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 Gene3D G3DSA:3.40.50.1010 5 160 3.1E-25 T 12-10-2018 R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 Pfam PF13638 PIN domain 11 156 2.1E-36 T 12-10-2018 IPR002716 PIN domain R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 SUPERFAMILY SSF52540 197 438 9.62E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 SMART SM00670 9 143 3.2E-9 T 12-10-2018 IPR002716 PIN domain R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 SUPERFAMILY SSF88723 9 157 1.05E-13 T 12-10-2018 IPR029060 PIN-like domain superfamily R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 Gene3D G3DSA:3.40.50.300 248 457 1.1E-59 T 12-10-2018 R615_04560 fafd68e6c8d75079eed03abafc1f1ca7 459 Pfam PF02562 PhoH-like protein 250 444 4.1E-46 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 R615_10415 0e3ba0509a959d3594953c1644477b8c 135 Gene3D G3DSA:1.10.490.10 9 135 2.2E-34 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 R615_10415 0e3ba0509a959d3594953c1644477b8c 135 Pfam PF01152 Bacterial-like globin 15 111 4.8E-25 T 12-10-2018 IPR001486 Truncated hemoglobin GO:0019825 R615_10415 0e3ba0509a959d3594953c1644477b8c 135 SUPERFAMILY SSF46458 14 126 3.5E-28 T 12-10-2018 IPR009050 Globin-like superfamily R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 Gene3D G3DSA:2.160.10.10 68 191 1.2E-37 T 12-10-2018 R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 7 167 1.1E-77 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 123 153 1.0E-5 T 12-10-2018 IPR001451 Hexapeptide repeat R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 73 109 3.4E-5 T 12-10-2018 IPR001451 Hexapeptide repeat R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 127 155 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 SUPERFAMILY SSF51161 4 171 9.84E-57 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily R615_12660 3b895127cbf1b6467acceb6b5a05f56d 279 Gene3D G3DSA:1.10.3130.10 2 67 2.1E-23 T 12-10-2018 R615_15170 94292d2e04efebb083cf2d2f0cfe30a9 222 Pfam PF10277 Frag1/DRAM/Sfk1 family 6 211 2.1E-8 T 12-10-2018 IPR019402 Frag1/DRAM/Sfk1 R615_15600 77e026190dcc7bf5e1e092b4ec1b9b91 391 Gene3D G3DSA:1.10.8.1180 220 283 1.6E-10 T 12-10-2018 R615_15600 77e026190dcc7bf5e1e092b4ec1b9b91 391 Gene3D G3DSA:1.10.8.1180 294 355 9.5E-7 T 12-10-2018 R615_15515 3a94278ae8809656edfbaa165a704ecd 253 PIRSF PIRSF028069 1 253 4.2E-74 T 12-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 R615_15515 3a94278ae8809656edfbaa165a704ecd 253 Pfam PF11932 Protein of unknown function (DUF3450) 12 248 3.1E-86 T 12-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 R615_12465 bee492bf1dd405475dcd6a4993786ed1 156 Pfam PF11163 Protein of unknown function (DUF2947) 3 154 3.5E-62 T 12-10-2018 IPR021334 Protein of unknown function DUF2947 R615_08125 4dc3fd7cf097218ce15dcbbcb072453b 166 Pfam PF11911 Protein of unknown function (DUF3429) 28 155 2.3E-19 T 12-10-2018 IPR021836 Protein of unknown function DUF3429 R615_02355 4a3b909124f1eab14d48e1cdbfbcef94 141 SUPERFAMILY SSF53850 22 138 2.08E-18 T 12-10-2018 R615_02355 4a3b909124f1eab14d48e1cdbfbcef94 141 Gene3D G3DSA:3.40.190.10 24 140 1.1E-14 T 12-10-2018 R615_09330 85667e6de1cb324dbe17797bc01fe048 324 Gene3D G3DSA:3.40.1750.20 177 243 4.1E-63 T 12-10-2018 R615_09330 85667e6de1cb324dbe17797bc01fe048 324 PRINTS PR00127 Clp protease catalytic subunit P signature 250 269 2.1E-5 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_09330 85667e6de1cb324dbe17797bc01fe048 324 PRINTS PR00127 Clp protease catalytic subunit P signature 145 162 2.1E-5 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_09330 85667e6de1cb324dbe17797bc01fe048 324 PRINTS PR00127 Clp protease catalytic subunit P signature 109 129 2.1E-5 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 R615_09330 85667e6de1cb324dbe17797bc01fe048 324 SUPERFAMILY SSF52096 64 273 9.33E-42 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily R615_09330 85667e6de1cb324dbe17797bc01fe048 324 Gene3D G3DSA:3.90.226.10 76 275 4.1E-63 T 12-10-2018 R615_09330 85667e6de1cb324dbe17797bc01fe048 324 Pfam PF01343 Peptidase family S49 141 280 6.6E-31 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 R615_03595 12036453f8418920625bd5bec29f3003 664 SUPERFAMILY SSF56935 21 646 1.21E-62 T 12-10-2018 R615_03595 12036453f8418920625bd5bec29f3003 664 Gene3D G3DSA:2.40.170.20 140 647 9.2E-30 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_03595 12036453f8418920625bd5bec29f3003 664 Pfam PF07715 TonB-dependent Receptor Plug Domain 22 121 5.1E-7 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_03595 12036453f8418920625bd5bec29f3003 664 Gene3D G3DSA:2.170.130.10 9 126 4.8E-6 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_14605 87deb02e2148215fb6934f7ce5d27b9d 166 Pfam PF04463 Protein of unknown function (DUF523) 5 152 4.6E-44 T 12-10-2018 IPR007553 Domain of unknown function DUF523 R615_08930 ba7301bdcaed599bb10218684ee04c58 183 SUPERFAMILY SSF46626 20 90 2.89E-7 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_08930 ba7301bdcaed599bb10218684ee04c58 183 SUPERFAMILY SSF46626 104 183 2.26E-13 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_08930 ba7301bdcaed599bb10218684ee04c58 183 Gene3D G3DSA:1.10.760.10 92 183 1.7E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_16285 4e90546b8bebd49dd89ba7052b42e817 219 SUPERFAMILY SSF110997 70 139 9.94E-5 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 R615_09315 854d9118b332eee2ae1ea97828c5d147 339 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 3 331 1.3E-74 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 R615_09315 854d9118b332eee2ae1ea97828c5d147 339 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 339 93.51 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 R615_09315 854d9118b332eee2ae1ea97828c5d147 339 Gene3D G3DSA:3.40.718.10 1 337 1.4E-92 T 12-10-2018 R615_09315 854d9118b332eee2ae1ea97828c5d147 339 SUPERFAMILY SSF53659 1 330 4.07E-73 T 12-10-2018 R615_09315 854d9118b332eee2ae1ea97828c5d147 339 Pfam PF02504 Fatty acid synthesis protein 3 310 6.7E-71 T 12-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 R615_09315 854d9118b332eee2ae1ea97828c5d147 339 PIRSF PIRSF002465 1 336 2.5E-90 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 259 5.6E-25 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 1.2E-46 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 243 1.1E-32 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 SUPERFAMILY SSF117143 92 222 7.98E-37 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 6.4E-114 T 12-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 R615_04765 d3b44019c7904f5dca3535d4286d5dc1 261 Pfam PF00460 Flagella basal body rod protein 5 35 5.8E-10 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 R615_09850 dea76fa0218830b94f5d108b0b5cba44 323 Gene3D G3DSA:2.120.10.30 31 315 3.1E-10 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_09850 dea76fa0218830b94f5d108b0b5cba44 323 SUPERFAMILY SSF63825 4 210 1.2E-9 T 12-10-2018 R615_03755 c26067fd45bf568fb90e6d9dd3738a08 505 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 6 474 1.0E-130 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 R615_03755 c26067fd45bf568fb90e6d9dd3738a08 505 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 491 45.477 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 R615_14950 4f3e9e61e37d7f2e9e6cda42877e452a 284 Pfam PF07045 Domain of unknown function (DUF1330) 35 129 3.0E-19 T 12-10-2018 IPR010753 Domain of unknown function DUF1330 R615_14950 4f3e9e61e37d7f2e9e6cda42877e452a 284 SUPERFAMILY SSF54909 35 125 1.45E-13 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel R615_14950 4f3e9e61e37d7f2e9e6cda42877e452a 284 Gene3D G3DSA:3.30.70.100 31 131 5.3E-18 T 12-10-2018 R615_15565 b44d72fd9c7b28b2591de47b69f1f674 198 Pfam PF03929 PepSY-associated TM region 27 172 8.9E-11 T 12-10-2018 IPR005625 PepSY-associated TM protein R615_10065 5b1cd6adfe3be2f78769299cc5f3c363 308 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 8 284 7.5E-27 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD R615_00500 803c0854b7cdcddb0d271715bed1c455 88 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 5 57 9.0E-19 T 12-10-2018 IPR012658 Conserved hypothetical protein CHP02443 R615_00500 803c0854b7cdcddb0d271715bed1c455 88 Pfam PF09526 Probable metal-binding protein (DUF2387) 6 68 7.6E-24 T 12-10-2018 IPR012658 Conserved hypothetical protein CHP02443 R615_13735 20a49e78bbc1a9fd8d97e6c4f7b15ae5 184 Pfam PF09905 DNA-binding protein VF530 14 75 4.6E-30 T 12-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 R615_13735 20a49e78bbc1a9fd8d97e6c4f7b15ae5 184 Gene3D G3DSA:1.10.720.30 21 79 2.2E-25 T 12-10-2018 IPR036361 SAP domain superfamily R615_09690 6a55dd786e1e61febb5d977ac755e60e 249 Pfam PF12697 Alpha/beta hydrolase family 24 239 1.4E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_09690 6a55dd786e1e61febb5d977ac755e60e 249 SUPERFAMILY SSF53474 6 242 1.36E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09690 6a55dd786e1e61febb5d977ac755e60e 249 Gene3D G3DSA:3.40.50.1820 3 245 7.2E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08195 15aab16b87764c55638aea863b9a79e8 421 Gene3D G3DSA:3.40.50.1820 19 283 5.8E-29 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08195 15aab16b87764c55638aea863b9a79e8 421 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 6.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08195 15aab16b87764c55638aea863b9a79e8 421 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 6.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08195 15aab16b87764c55638aea863b9a79e8 421 PRINTS PR00111 Alpha/beta hydrolase fold signature 227 241 6.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08195 15aab16b87764c55638aea863b9a79e8 421 PRINTS PR00111 Alpha/beta hydrolase fold signature 64 79 6.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_08195 15aab16b87764c55638aea863b9a79e8 421 SUPERFAMILY SSF53474 21 282 1.61E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08195 15aab16b87764c55638aea863b9a79e8 421 Pfam PF12697 Alpha/beta hydrolase family 43 268 1.4E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_14090 2b569010b6d51260d80680ed9ec9e5ce 301 Gene3D G3DSA:3.40.50.2300 119 258 6.5E-8 T 12-10-2018 R615_00330 5dda0cf54680cbf80ce74a877a907368 211 Pfam PF13785 Domain of unknown function (DUF4178) 31 194 3.0E-16 T 12-10-2018 IPR025235 Domain of unknown function DUF4178 R615_07410 58dd7103265775a308615bdb8cb8e4cc 135 Gene3D G3DSA:3.10.450.40 1 133 6.9E-45 T 12-10-2018 R615_07410 58dd7103265775a308615bdb8cb8e4cc 135 SUPERFAMILY SSF160719 25 132 1.96E-27 T 12-10-2018 R615_07410 58dd7103265775a308615bdb8cb8e4cc 135 Pfam PF04965 Gene 25-like lysozyme 29 118 2.4E-20 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD R615_03320 b0d26c7cfbbfffd44e5dd96ea72d5c16 174 Pfam PF14341 PilX N-terminal 7 48 6.7E-6 T 12-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain R615_14965 e8a042ffad4daa20b40a26afd1b84198 262 SUPERFAMILY SSF51197 16 261 1.65E-46 T 12-10-2018 R615_14965 e8a042ffad4daa20b40a26afd1b84198 262 Gene3D G3DSA:3.60.130.10 1 262 3.8E-70 T 12-10-2018 R615_14965 e8a042ffad4daa20b40a26afd1b84198 262 ProDom PD135861 METAL-BINDING IRON CSID GAB CYTOPLASMIC 3D-STRUCTURE HOMOLOG DIRECT SEQUENCING 89 255 3.0E-7 T 12-10-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 R615_14965 e8a042ffad4daa20b40a26afd1b84198 262 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 26 259 2.0E-38 T 12-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 65 201 3.0E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 92 195 1.1E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 201 2.2E-20 T 12-10-2018 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 Gene3D G3DSA:3.40.50.1000 5 221 6.5E-62 T 12-10-2018 IPR023214 HAD superfamily R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 190 203 3.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 3.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 3.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 Gene3D G3DSA:1.20.120.1600 17 104 6.5E-62 T 12-10-2018 R615_01175 fb056c41e3e5c7ac0b82756c007ca9d9 235 SUPERFAMILY SSF56784 3 227 2.57E-41 T 12-10-2018 IPR036412 HAD-like superfamily R615_17090 c0d3f8a91ba77429a452d2fa3e1ae82b 153 Pfam PF04304 Protein of unknown function (DUF454) 29 144 3.0E-37 T 12-10-2018 IPR007401 Protein of unknown function DUF454 R615_17090 c0d3f8a91ba77429a452d2fa3e1ae82b 153 PIRSF PIRSF016789 28 149 9.9E-36 T 12-10-2018 IPR007401 Protein of unknown function DUF454 R615_02820 546f87c6a98411717813bfcb0a5f28ab 294 SMART SM00382 50 194 0.0069 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02820 546f87c6a98411717813bfcb0a5f28ab 294 SUPERFAMILY SSF52540 13 273 4.9E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02820 546f87c6a98411717813bfcb0a5f28ab 294 Pfam PF13401 AAA domain 50 179 4.5E-24 T 12-10-2018 IPR003593 AAA+ ATPase domain R615_02820 546f87c6a98411717813bfcb0a5f28ab 294 Gene3D G3DSA:3.40.50.300 36 197 2.9E-14 T 12-10-2018 R615_01035 31f6d1e5ad29d482d1678fdd70a776c2 293 Pfam PF01040 UbiA prenyltransferase family 20 265 1.2E-24 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 R615_12990 8dcbbfbd3ca7863db24298ca0b8312af 310 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 306 7.8E-92 T 12-10-2018 IPR007296 Domain of unknown function DUF403 R615_01355 4c001b2299a0af0b2f53ac2db3ba7356 735 SMART SM00460 476 546 3.8E-18 T 12-10-2018 IPR002931 Transglutaminase-like R615_01355 4c001b2299a0af0b2f53ac2db3ba7356 735 SUPERFAMILY SSF54001 390 551 1.82E-36 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_01355 4c001b2299a0af0b2f53ac2db3ba7356 735 Gene3D G3DSA:3.10.620.30 402 569 4.1E-25 T 12-10-2018 R615_01355 4c001b2299a0af0b2f53ac2db3ba7356 735 Pfam PF01841 Transglutaminase-like superfamily 428 544 8.5E-27 T 12-10-2018 IPR002931 Transglutaminase-like R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 Gene3D G3DSA:2.102.10.10 43 186 3.8E-43 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 Pfam PF00355 Rieske [2Fe-2S] domain 54 175 3.4E-10 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 5 40 2.2E-12 T 12-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 PRINTS PR00162 Rieske 2Fe-2S subunit signature 121 132 4.4E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 PRINTS PR00162 Rieske 2Fe-2S subunit signature 148 160 4.4E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 181 2.0E-63 T 12-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 R615_08875 74c7485d0fd625eaa9f3636912ef8c51 194 SUPERFAMILY SSF50022 31 187 5.06E-36 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 R615_15610 bc7b1acd020451bcd4fc7d6d28edec85 154 Gene3D G3DSA:2.60.120.1440 28 154 3.8E-16 T 12-10-2018 R615_15610 bc7b1acd020451bcd4fc7d6d28edec85 154 Pfam PF04773 FecR protein 41 134 2.6E-14 T 12-10-2018 IPR006860 FecR protein R615_07185 da7f1c05c6ed3ee36261e78756689502 271 Pfam PF05690 Thiazole biosynthesis protein ThiG 6 255 3.5E-96 T 12-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 R615_07185 da7f1c05c6ed3ee36261e78756689502 271 SUPERFAMILY SSF110399 4 246 2.75E-72 T 12-10-2018 R615_07185 da7f1c05c6ed3ee36261e78756689502 271 Hamap MF_00443 Thiazole synthase [thiG]. 3 261 39.603 T 12-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 R615_07185 da7f1c05c6ed3ee36261e78756689502 271 Gene3D G3DSA:3.20.20.70 1 266 2.5E-96 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_10225 06388061f70e3e7570613ea68172a58f 413 Gene3D G3DSA:3.30.390.30 326 401 8.2E-7 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 R615_10225 06388061f70e3e7570613ea68172a58f 413 SUPERFAMILY SSF51905 6 191 7.08E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10225 06388061f70e3e7570613ea68172a58f 413 Gene3D G3DSA:3.50.50.60 7 300 4.6E-76 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 4.0E-12 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 4.0E-12 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 4.0E-12 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 4.0E-12 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 SUPERFAMILY SSF51905 147 307 1.05E-24 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 104 113 4.8E-9 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 4.8E-9 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 237 251 4.8E-9 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 4.8E-9 T 12-10-2018 R615_10225 06388061f70e3e7570613ea68172a58f 413 Gene3D G3DSA:3.50.50.60 114 243 4.6E-76 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_10225 06388061f70e3e7570613ea68172a58f 413 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 283 5.1E-44 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 R615_07935 9fe823948805b9107613edbb417ab8d9 345 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 43 331 1.1E-45 T 12-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system R615_07935 9fe823948805b9107613edbb417ab8d9 345 Gene3D G3DSA:3.10.450.620 38 155 3.6E-6 T 12-10-2018 R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 SUPERFAMILY SSF54523 11 80 7.22E-9 T 12-10-2018 R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 30 1.1E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 PRINTS PR00885 Bacterial general secretion pathway protein H signature 6 20 1.5E-8 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 PRINTS PR00885 Bacterial general secretion pathway protein H signature 151 166 1.5E-8 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 9.5E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site R615_08820 887969eeaae7b30cf01baefd62d8e7ee 197 Gene3D G3DSA:3.55.40.10 39 196 2.4E-18 T 12-10-2018 R615_10185 6234055c0d4f25670a3e569961a91a1c 103 Gene3D G3DSA:1.20.120.20 9 103 1.8E-6 T 12-10-2018 R615_00450 e0fbdaff9a3ad6c00e8b6b6c35651394 295 Pfam PF01435 Peptidase family M48 83 292 7.4E-43 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 R615_00450 e0fbdaff9a3ad6c00e8b6b6c35651394 295 Gene3D G3DSA:3.30.2010.10 72 165 4.7E-34 T 12-10-2018 R615_00450 e0fbdaff9a3ad6c00e8b6b6c35651394 295 Hamap MF_00188 Protease HtpX [htpX]. 1 292 25.309 T 12-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 R615_02805 15a22ecbca80c053508b3d9719ad4647 221 Pfam PF04612 Type II secretion system (T2SS), protein M 12 106 2.1E-8 T 12-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 R615_08455 646336f5ac228203564ea2155a07cac0 259 Gene3D G3DSA:3.20.20.190 9 252 1.7E-78 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 R615_08455 646336f5ac228203564ea2155a07cac0 259 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 22 247 1.9E-37 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 R615_08455 646336f5ac228203564ea2155a07cac0 259 SUPERFAMILY SSF51695 19 249 3.4E-66 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 R615_07495 0abd74e45681ba6a5c06547a6e501c00 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 68 156 1.5E-25 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain R615_07495 0abd74e45681ba6a5c06547a6e501c00 160 Gene3D G3DSA:3.10.50.40 27 160 1.1E-50 T 12-10-2018 R615_07495 0abd74e45681ba6a5c06547a6e501c00 160 SUPERFAMILY SSF54534 27 158 4.91E-50 T 12-10-2018 R615_07495 0abd74e45681ba6a5c06547a6e501c00 160 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 30 61 7.6E-10 T 12-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 R615_02940 37c354fa0a0c16469fd497e569b427cf 217 Gene3D G3DSA:2.60.120.620 11 209 2.2E-51 T 12-10-2018 R615_02940 37c354fa0a0c16469fd497e569b427cf 217 SMART SM00702 22 204 2.3E-18 T 12-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 R615_02940 37c354fa0a0c16469fd497e569b427cf 217 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 114 204 2.0E-20 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 R615_04190 12f2dd2bb414e27fcfdff973b1f37dc0 103 Pfam PF11743 Protein of unknown function (DUF3301) 5 99 2.5E-27 T 12-10-2018 IPR021732 Protein of unknown function DUF3301 R615_11070 a55e208e4263bbc2976d27f1bd75e07f 190 Gene3D G3DSA:3.40.50.300 1 172 2.7E-24 T 12-10-2018 R615_11070 a55e208e4263bbc2976d27f1bd75e07f 190 SUPERFAMILY SSF52540 3 137 7.83E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_11070 a55e208e4263bbc2976d27f1bd75e07f 190 Pfam PF13671 AAA domain 4 124 4.6E-12 T 12-10-2018 R615_12135 27c39298c988a40072dd7ada1c9f7b3b 254 SMART SM00047 97 248 0.0023 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 R615_12135 27c39298c988a40072dd7ada1c9f7b3b 254 Gene3D G3DSA:1.10.530.10 107 248 3.8E-20 T 12-10-2018 R615_12135 27c39298c988a40072dd7ada1c9f7b3b 254 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 115 243 5.6E-17 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 R615_15875 2e8d0dc537117fb5184262704d893893 133 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 6 46 1.1E-6 T 12-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system R615_07250 70dde01744fa3d27e567701197b8d1d6 134 Pfam PF03092 BT1 family 29 123 3.6E-5 T 12-10-2018 IPR039309 Biopterin transporter family R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 18 99 1.0E-19 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 Pfam PF00825 Ribonuclease P 6 113 5.9E-29 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 SUPERFAMILY SSF54211 5 116 1.06E-27 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 Gene3D G3DSA:3.30.230.10 1 119 4.4E-38 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 11 114 1.0E-24 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 12-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 R615_17510 70227c3daaf0df5c0cdf7c2f8b204578 133 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 116 17.811 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 R615_13795 70d67765b26243a74fc8a36283643673 158 Pfam PF04186 FxsA cytoplasmic membrane protein 6 109 6.3E-32 T 12-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 R615_12365 6af526c835c64f89d1f7cb80c3707ea5 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 44 205 36.872 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 R615_12365 6af526c835c64f89d1f7cb80c3707ea5 212 Pfam PF01625 Peptide methionine sulfoxide reductase 48 199 1.1E-62 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 R615_12365 6af526c835c64f89d1f7cb80c3707ea5 212 Gene3D G3DSA:3.30.1060.10 5 210 6.0E-83 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 R615_12365 6af526c835c64f89d1f7cb80c3707ea5 212 SUPERFAMILY SSF55068 7 203 3.27E-73 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 R615_12365 6af526c835c64f89d1f7cb80c3707ea5 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 47 199 3.5E-63 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 R615_08495 dfc942dd817cf4082c069e44af1f9bfd 91 Pfam PF14333 Domain of unknown function (DUF4389) 11 85 4.3E-25 T 12-10-2018 IPR025498 Protein of unknown function DUF4389 R615_06390 399c75a10250732d182c62c8f528b60d 253 Pfam PF11306 Protein of unknown function (DUF3108) 48 243 1.2E-19 T 12-10-2018 IPR021457 Protein of unknown function DUF3108 R615_01960 9d7e7f030419a9d06450b0792ecf37ee 115 Pfam PF13430 Domain of unknown function (DUF4112) 11 113 5.6E-34 T 12-10-2018 IPR025187 Protein of unknown function DUF4112 R615_06670 c11eadc7d5b0e199b8359a34075939f8 512 SUPERFAMILY SSF49785 71 157 1.98E-5 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_06670 c11eadc7d5b0e199b8359a34075939f8 512 Gene3D G3DSA:2.60.120.260 65 220 1.5E-20 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily R615_06155 66427ed232b42f63a16e10798b5eb223 201 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 199 18.684 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 R615_06155 66427ed232b42f63a16e10798b5eb223 201 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 200 8.0E-52 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 R615_06155 66427ed232b42f63a16e10798b5eb223 201 Pfam PF04279 Intracellular septation protein A 1 198 5.7E-67 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 R615_08955 29ca3d6f605c1969d03aaebe4271d7ab 182 Gene3D G3DSA:1.10.760.10 42 168 4.0E-13 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_08955 29ca3d6f605c1969d03aaebe4271d7ab 182 SUPERFAMILY SSF46626 51 173 2.72E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 R615_08955 29ca3d6f605c1969d03aaebe4271d7ab 182 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 72 160 3.6E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 R615_00720 38ca86f77e1403b0f493dc34116b56f5 346 Gene3D G3DSA:3.40.190.10 27 311 3.1E-50 T 12-10-2018 R615_00720 38ca86f77e1403b0f493dc34116b56f5 346 Pfam PF12849 PBP superfamily domain 20 309 6.8E-43 T 12-10-2018 IPR024370 PBP domain R615_00720 38ca86f77e1403b0f493dc34116b56f5 346 Gene3D G3DSA:3.40.190.10 111 283 3.1E-50 T 12-10-2018 R615_00720 38ca86f77e1403b0f493dc34116b56f5 346 SUPERFAMILY SSF53850 25 340 4.78E-69 T 12-10-2018 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 7 191 3.0E-83 T 12-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 150 161 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 Gene3D G3DSA:3.30.70.20 91 180 5.0E-21 T 12-10-2018 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 Pfam PF04060 Putative Fe-S cluster 48 79 2.0E-13 T 12-10-2018 IPR007202 4Fe-4S domain GO:0051536 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 Gene3D G3DSA:1.10.15.40 42 90 7.4E-7 T 12-10-2018 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 8 172 24.655 T 12-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 Pfam PF14697 4Fe-4S dicluster domain 113 167 6.5E-18 T 12-10-2018 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 SUPERFAMILY SSF54862 41 179 3.46E-31 T 12-10-2018 R615_10495 53d838b0a044b2094ccc22e41ac15cbb 202 PIRSF PIRSF005784 7 193 9.2E-86 T 12-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 R615_15725 aab3cfb8f5e7d36392986e4e8bd8016a 345 Pfam PF03060 Nitronate monooxygenase 81 330 2.3E-39 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 R615_15725 aab3cfb8f5e7d36392986e4e8bd8016a 345 Gene3D G3DSA:3.20.20.70 1 345 2.7E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_15725 aab3cfb8f5e7d36392986e4e8bd8016a 345 SUPERFAMILY SSF51412 1 337 3.36E-60 T 12-10-2018 R615_16010 de30cf9ec06afddcb3c3aabad7711745 377 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 6 360 9.1E-106 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 R615_16010 de30cf9ec06afddcb3c3aabad7711745 377 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 377 1.4E-156 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 R615_16010 de30cf9ec06afddcb3c3aabad7711745 377 PIRSF PIRSF000267 1 375 3.0E-120 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 R615_11340 405cd2b8943e7fc39264df7e76532f19 84 Gene3D G3DSA:1.10.1220.170 41 84 1.1E-14 T 12-10-2018 R615_11340 405cd2b8943e7fc39264df7e76532f19 84 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 55 2.8E-8 T 12-10-2018 R615_11340 405cd2b8943e7fc39264df7e76532f19 84 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 2.0E-22 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM R615_11340 405cd2b8943e7fc39264df7e76532f19 84 SUPERFAMILY SSF143120 1 81 1.7E-24 T 12-10-2018 IPR036165 YefM-like superfamily R615_11340 405cd2b8943e7fc39264df7e76532f19 84 Gene3D G3DSA:3.40.1620.10 1 40 6.0E-9 T 12-10-2018 R615_15490 d494cf56349073dc5d5049160b1a8e7f 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 337 2.4E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 R615_07660 ee6e66307452b287dc0df71022823e3b 353 SUPERFAMILY SSF88713 44 232 2.41E-37 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 R615_07660 ee6e66307452b287dc0df71022823e3b 353 Gene3D G3DSA:3.20.20.370 23 239 1.3E-56 T 12-10-2018 R615_07660 ee6e66307452b287dc0df71022823e3b 353 Pfam PF01522 Polysaccharide deacetylase 81 206 1.6E-28 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 R615_11285 3bc956d54f3d13c49c628041e1490df7 440 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 148 440 47.987 T 12-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 R615_11285 3bc956d54f3d13c49c628041e1490df7 440 Pfam PF05971 Protein of unknown function (DUF890) 150 440 8.2E-110 T 12-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 R615_11285 3bc956d54f3d13c49c628041e1490df7 440 Gene3D G3DSA:3.40.50.150 181 440 1.8E-77 T 12-10-2018 R615_11285 3bc956d54f3d13c49c628041e1490df7 440 SUPERFAMILY SSF53335 187 440 1.05E-21 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_17275 b86a5830158d342033c991b3a68fc8e8 802 SUPERFAMILY SSF141868 547 796 3.27E-82 T 12-10-2018 IPR035919 EAL domain superfamily R615_17275 b86a5830158d342033c991b3a68fc8e8 802 SUPERFAMILY SSF55073 370 533 1.1E-44 T 12-10-2018 IPR029787 Nucleotide cyclase R615_17275 b86a5830158d342033c991b3a68fc8e8 802 Gene3D G3DSA:3.30.70.270 360 544 4.1E-59 T 12-10-2018 R615_17275 b86a5830158d342033c991b3a68fc8e8 802 Pfam PF00563 EAL domain 548 783 2.3E-66 T 12-10-2018 IPR001633 EAL domain R615_17275 b86a5830158d342033c991b3a68fc8e8 802 SMART SM00267 354 531 1.1E-55 T 12-10-2018 IPR000160 GGDEF domain R615_17275 b86a5830158d342033c991b3a68fc8e8 802 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 362 529 1.9E-39 T 12-10-2018 IPR000160 GGDEF domain R615_17275 b86a5830158d342033c991b3a68fc8e8 802 Gene3D G3DSA:3.20.20.450 545 802 8.9E-86 T 12-10-2018 IPR035919 EAL domain superfamily R615_17275 b86a5830158d342033c991b3a68fc8e8 802 SMART SM00052 541 788 2.5E-92 T 12-10-2018 IPR001633 EAL domain R615_17275 b86a5830158d342033c991b3a68fc8e8 802 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 526 5.4E-45 T 12-10-2018 IPR000160 GGDEF domain R615_08150 cd10a5b72b18413513c634d774ee7ac8 278 SUPERFAMILY SSF55620 1 154 1.33E-22 T 12-10-2018 R615_08150 cd10a5b72b18413513c634d774ee7ac8 278 SUPERFAMILY SSF55620 150 276 5.28E-29 T 12-10-2018 R615_08150 cd10a5b72b18413513c634d774ee7ac8 278 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 149 274 6.4E-7 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 R615_08150 cd10a5b72b18413513c634d774ee7ac8 278 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 24 78 2.4E-6 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 R615_08150 cd10a5b72b18413513c634d774ee7ac8 278 Gene3D G3DSA:3.30.479.10 12 150 1.4E-19 T 12-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 R615_08150 cd10a5b72b18413513c634d774ee7ac8 278 Gene3D G3DSA:3.30.479.10 151 277 7.1E-6 T 12-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 Gene3D G3DSA:1.10.10.60 231 336 1.1E-25 T 12-10-2018 R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 318 334 1.5E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 318 1.5E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 SMART SM00342 251 334 4.1E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 21 205 4.2E-28 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 SUPERFAMILY SSF46689 287 336 3.58E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_14585 604b88e1679f9fce6b105d1bdc4cff1c 336 Pfam PF12833 Helix-turn-helix domain 259 336 9.4E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 R615_16340 8cb9d2ce7148432c87512e9daced9d0e 618 Pfam PF02690 Na+/Pi-cotransporter 36 174 1.2E-34 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 R615_16340 8cb9d2ce7148432c87512e9daced9d0e 618 Pfam PF02690 Na+/Pi-cotransporter 202 263 5.1E-10 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 R615_12155 2739c784fc89141708bb87650278d565 295 SUPERFAMILY SSF69593 11 287 1.44E-37 T 12-10-2018 R615_12155 2739c784fc89141708bb87650278d565 295 Pfam PF01553 Acyltransferase 78 226 6.3E-15 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_12155 2739c784fc89141708bb87650278d565 295 SMART SM00563 85 227 2.1E-18 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 R615_14015 90d3c18f9cfd4c66ca6475f11e576452 178 Gene3D G3DSA:3.30.160.150 14 175 3.6E-35 T 12-10-2018 R615_14015 90d3c18f9cfd4c66ca6475f11e576452 178 Pfam PF04390 Lipopolysaccharide-assembly 43 154 8.6E-9 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 R615_14015 90d3c18f9cfd4c66ca6475f11e576452 178 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 1 159 18.881 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 R615_15605 dcdaaf42f9832a815f80dc88b9f3246c 221 Pfam PF11417 Loader and inhibitor of phage G40P 41 108 4.6E-4 T 12-10-2018 IPR024424 Replicative helicase inhibitor G39P, N-terminal R615_12445 81cc975f54dfd697f98b6d3a4705b4e8 508 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 26 183 3.9E-51 T 12-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices R615_12445 81cc975f54dfd697f98b6d3a4705b4e8 508 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 260 504 3.5E-107 T 12-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase R615_05250 fd2ea432c50e1ac8888aae0f942cc035 124 SMART SM00448 1 115 6.5E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05250 fd2ea432c50e1ac8888aae0f942cc035 124 Pfam PF00072 Response regulator receiver domain 3 115 5.4E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_05250 fd2ea432c50e1ac8888aae0f942cc035 124 Gene3D G3DSA:3.40.50.2300 1 122 8.6E-38 T 12-10-2018 R615_05250 fd2ea432c50e1ac8888aae0f942cc035 124 SUPERFAMILY SSF52172 1 121 3.7E-36 T 12-10-2018 IPR011006 CheY-like superfamily R615_09410 b4ee7b26da09808b3bb8f6f6fb83ecee 289 Gene3D G3DSA:3.40.50.1820 20 278 4.7E-19 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_09410 b4ee7b26da09808b3bb8f6f6fb83ecee 289 Pfam PF12697 Alpha/beta hydrolase family 32 271 4.6E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_09410 b4ee7b26da09808b3bb8f6f6fb83ecee 289 SUPERFAMILY SSF53474 21 276 1.23E-19 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_04950 b2eeba6b7159df84f6af61223264a9e5 84 Gene3D G3DSA:1.10.260.40 1 84 3.1E-9 T 12-10-2018 R615_14645 bcb1be9ebd80e979254f9057a7a0a6a8 66 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 1.4E-15 T 12-10-2018 IPR021309 Protein of unknown function DUF2892 R615_03720 abb48d65ef1a48222c4fb5f11d8bec15 543 Pfam PF13005 zinc-finger binding domain of transposase IS66 147 189 3.7E-11 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 R615_03720 abb48d65ef1a48222c4fb5f11d8bec15 543 Pfam PF03050 Transposase IS66 family 204 491 2.4E-101 T 12-10-2018 IPR004291 Transposase, IS66 R615_03720 abb48d65ef1a48222c4fb5f11d8bec15 543 Pfam PF13007 Transposase C of IS166 homeodomain 58 138 8.4E-14 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain R615_03720 abb48d65ef1a48222c4fb5f11d8bec15 543 Pfam PF13817 IS66 C-terminal element 498 535 1.5E-16 T 12-10-2018 IPR039552 Transposase IS66, C-terminal R615_09055 4ae962899fb31b948e347f15e55eb87d 448 Gene3D G3DSA:1.20.1600.10 39 437 2.5E-43 T 12-10-2018 R615_09055 4ae962899fb31b948e347f15e55eb87d 448 SUPERFAMILY SSF56954 21 430 1.57E-59 T 12-10-2018 R615_09055 4ae962899fb31b948e347f15e55eb87d 448 Pfam PF02321 Outer membrane efflux protein 49 230 1.3E-12 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_09055 4ae962899fb31b948e347f15e55eb87d 448 Pfam PF02321 Outer membrane efflux protein 260 428 2.2E-13 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_03645 56063afa86b5c083693178d635d40e89 289 SUPERFAMILY SSF46955 10 85 2.7E-19 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily R615_03645 56063afa86b5c083693178d635d40e89 289 SMART SM00422 10 79 5.1E-18 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_03645 56063afa86b5c083693178d635d40e89 289 Pfam PF13411 MerR HTH family regulatory protein 10 77 8.9E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 R615_03645 56063afa86b5c083693178d635d40e89 289 Gene3D G3DSA:1.10.1660.10 4 77 1.1E-24 T 12-10-2018 R615_14380 18cc847915af8d22b0d2eb63a1c9105b 142 Gene3D G3DSA:3.30.160.20 8 142 1.8E-36 T 12-10-2018 R615_14380 18cc847915af8d22b0d2eb63a1c9105b 142 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 27 43 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 R615_14380 18cc847915af8d22b0d2eb63a1c9105b 142 SUPERFAMILY SSF75620 14 104 9.42E-12 T 12-10-2018 R615_14380 18cc847915af8d22b0d2eb63a1c9105b 142 Pfam PF00472 RF-1 domain 14 138 1.0E-23 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 R615_13080 d365c0d8df3abe395301573563232d15 845 SMART SM00493 238 314 0.006 T 12-10-2018 IPR006171 TOPRIM domain R615_13080 d365c0d8df3abe395301573563232d15 845 Pfam PF06048 Domain of unknown function (DUF927) 359 630 2.5E-80 T 12-10-2018 IPR009270 Domain of unknown function DUF927 R615_13080 d365c0d8df3abe395301573563232d15 845 Pfam PF13362 Toprim domain 240 336 3.4E-8 T 12-10-2018 IPR006171 TOPRIM domain R615_03325 4fc220f3f01b08db09c9d6b1662b06fb 267 Pfam PF16074 Type IV Pilus-assembly protein W 134 263 1.1E-16 T 12-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 R615_04590 d6b2c0979951489cf493777c431b9c2c 278 Gene3D G3DSA:3.30.2010.10 70 160 1.2E-7 T 12-10-2018 R615_04590 d6b2c0979951489cf493777c431b9c2c 278 Pfam PF01435 Peptidase family M48 75 252 2.7E-21 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 R615_12865 f09725f1a7c6b4d8ec4e4290c67923a5 136 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 134 1.5E-34 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_12865 f09725f1a7c6b4d8ec4e4290c67923a5 136 Gene3D G3DSA:3.30.420.270 63 131 9.8E-11 T 12-10-2018 R615_06685 31eb0a9835dcb24d2c9fcec9725de3a3 370 Gene3D G3DSA:3.20.20.80 80 364 7.7E-17 T 12-10-2018 R615_06685 31eb0a9835dcb24d2c9fcec9725de3a3 370 Pfam PF02449 Beta-galactosidase 85 215 8.7E-9 T 12-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 R615_06685 31eb0a9835dcb24d2c9fcec9725de3a3 370 SUPERFAMILY SSF51445 83 266 2.11E-13 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily R615_10345 0527856c6e3791a5c3508b128d50e2fa 179 SUPERFAMILY SSF52499 2 179 9.16E-45 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 R615_10345 0527856c6e3791a5c3508b128d50e2fa 179 Pfam PF00857 Isochorismatase family 7 155 3.0E-24 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 R615_10345 0527856c6e3791a5c3508b128d50e2fa 179 Gene3D G3DSA:3.40.50.850 1 179 7.1E-46 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 R615_02580 179cc1d3cc7581fab7855ae82d2af818 181 SUPERFAMILY SSF51182 3 178 5.2E-42 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily R615_02580 179cc1d3cc7581fab7855ae82d2af818 181 Pfam PF03079 ARD/ARD' family 5 165 4.6E-37 T 12-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 R615_02580 179cc1d3cc7581fab7855ae82d2af818 181 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 38.511 T 12-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 R615_02580 179cc1d3cc7581fab7855ae82d2af818 181 Gene3D G3DSA:2.60.120.10 2 157 1.2E-51 T 12-10-2018 IPR014710 RmlC-like jelly roll fold R615_06130 ee9252f45003382dece0b60469b347f9 292 Pfam PF03547 Membrane transport protein 4 126 1.3E-6 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 R615_06130 ee9252f45003382dece0b60469b347f9 292 Pfam PF03547 Membrane transport protein 148 287 7.9E-13 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 R615_14465 21075b44f21437d12d0a0b9c15b01b1e 209 Pfam PF02169 LPP20 lipoprotein 74 152 1.4E-10 T 12-10-2018 IPR024952 Lipoprotein LPP20-like R615_03810 b7b9b9e45fc953c573ace5831adbc1ac 146 SUPERFAMILY SSF54637 10 144 4.3E-40 T 12-10-2018 IPR029069 HotDog domain superfamily R615_03810 b7b9b9e45fc953c573ace5831adbc1ac 146 Gene3D G3DSA:3.10.129.10 2 144 2.7E-48 T 12-10-2018 R615_03810 b7b9b9e45fc953c573ace5831adbc1ac 146 Pfam PF03061 Thioesterase superfamily 29 112 2.0E-17 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_14030 5c7aa16ea2fcd479ce6650f75b76df57 302 Pfam PF04321 RmlD substrate binding domain 95 290 3.1E-21 T 12-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 R615_14030 5c7aa16ea2fcd479ce6650f75b76df57 302 SUPERFAMILY SSF51735 30 291 1.09E-22 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily R615_14030 5c7aa16ea2fcd479ce6650f75b76df57 302 Gene3D G3DSA:3.40.50.720 29 295 1.1E-21 T 12-10-2018 R615_03695 737f3d7f81f0f388d67bbadf52d087b9 276 Pfam PF08808 RES domain 167 261 3.3E-6 T 12-10-2018 IPR014914 RES domain R615_03955 f5f09b26936c9b3da3915d3bd52f7212 246 SUPERFAMILY SSF55961 36 210 3.43E-23 T 12-10-2018 R615_03955 f5f09b26936c9b3da3915d3bd52f7212 246 Gene3D G3DSA:3.30.530.20 36 219 3.9E-38 T 12-10-2018 IPR023393 START-like domain superfamily R615_15885 69e40c146b6daf1dfd1f86b459933b6e 127 SUPERFAMILY SSF46785 3 119 6.82E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily R615_15885 69e40c146b6daf1dfd1f86b459933b6e 127 PIRSF PIRSF019455 1 127 1.7E-22 T 12-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 R615_15885 69e40c146b6daf1dfd1f86b459933b6e 127 Gene3D G3DSA:1.10.10.10 1 66 1.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_15885 69e40c146b6daf1dfd1f86b459933b6e 127 Pfam PF03965 Penicillinase repressor 3 117 2.3E-25 T 12-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 R615_01180 13eaa55ab5ff3e6dba0a9bf3616a913e 223 Gene3D G3DSA:3.30.450.40 42 220 1.6E-39 T 12-10-2018 IPR029016 GAF-like domain superfamily R615_01180 13eaa55ab5ff3e6dba0a9bf3616a913e 223 Pfam PF04340 Protein of unknown function, DUF484 6 218 6.9E-48 T 12-10-2018 IPR007435 Protein of unknown function DUF484 R615_12405 38065f54e1ec06cea852715fe47b6fec 322 Gene3D G3DSA:1.20.1530.20 2 305 8.3E-103 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily R615_12405 38065f54e1ec06cea852715fe47b6fec 322 Pfam PF01758 Sodium Bile acid symporter family 35 212 4.7E-46 T 12-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 R615_09445 787bdaa33e0fbac8e3f8819f0b757670 205 SUPERFAMILY SSF56784 2 190 9.22E-44 T 12-10-2018 IPR036412 HAD-like superfamily R615_09445 787bdaa33e0fbac8e3f8819f0b757670 205 Gene3D G3DSA:3.90.1470.10 13 128 8.6E-83 T 12-10-2018 R615_09445 787bdaa33e0fbac8e3f8819f0b757670 205 Pfam PF00702 haloacid dehalogenase-like hydrolase 65 164 3.8E-10 T 12-10-2018 R615_09445 787bdaa33e0fbac8e3f8819f0b757670 205 Gene3D G3DSA:3.40.50.1000 3 191 8.6E-83 T 12-10-2018 IPR023214 HAD superfamily R615_09445 787bdaa33e0fbac8e3f8819f0b757670 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 203 3.4E-111 T 12-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 R615_17340 41ad2e35b9cdbdcefd341ceda3556dcf 110 Pfam PF03899 ATP synthase I chain 1 95 3.7E-21 T 12-10-2018 IPR005598 ATP synthase protein I R615_00995 c59f51e9ec22897d05612a65397d5577 182 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 24 2.5E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal R615_06680 cd809c4c705c4e4618c2b9378aa565c3 247 Gene3D G3DSA:3.90.550.10 11 239 6.1E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_06680 cd809c4c705c4e4618c2b9378aa565c3 247 SUPERFAMILY SSF53448 6 233 8.55E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_06680 cd809c4c705c4e4618c2b9378aa565c3 247 Pfam PF00483 Nucleotidyl transferase 13 233 8.2E-22 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 R615_11970 278b344d4394017b4b3f6c9e4fe90635 526 Pfam PF00474 Sodium:solute symporter family 58 456 1.3E-69 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 R615_11970 278b344d4394017b4b3f6c9e4fe90635 526 Gene3D G3DSA:1.20.1730.10 48 524 1.2E-42 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily R615_02680 cc3c1c3be883949d0751e428ff794264 334 Gene3D G3DSA:1.10.3470.10 11 333 1.1E-89 T 12-10-2018 IPR037294 ABC transporter, BtuC-like R615_02680 cc3c1c3be883949d0751e428ff794264 334 Pfam PF01032 FecCD transport family 26 328 6.8E-83 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 R615_02680 cc3c1c3be883949d0751e428ff794264 334 SUPERFAMILY SSF81345 12 328 9.55E-72 T 12-10-2018 IPR037294 ABC transporter, BtuC-like R615_16975 af2889e807a4469b6c551202af623972 339 Pfam PF01594 AI-2E family transporter 13 325 8.0E-55 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like R615_07620 cf457f86ea000ee02d9a5d82818756a9 300 Gene3D G3DSA:3.40.50.300 3 171 1.7E-43 T 12-10-2018 R615_07620 cf457f86ea000ee02d9a5d82818756a9 300 SUPERFAMILY SSF52540 9 182 1.33E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_07620 cf457f86ea000ee02d9a5d82818756a9 300 Gene3D G3DSA:1.10.1580.10 174 266 1.6E-24 T 12-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily R615_07620 cf457f86ea000ee02d9a5d82818756a9 300 Pfam PF01926 50S ribosome-binding GTPase 116 199 2.4E-15 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 R615_07620 cf457f86ea000ee02d9a5d82818756a9 300 PIRSF PIRSF006230 1 277 6.9E-96 T 12-10-2018 IPR016478 GTPase, MTG1 R615_07620 cf457f86ea000ee02d9a5d82818756a9 300 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 272 9.6E-101 T 12-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis R615_01140 7c5b5632c98514b206cc0e35b34fdf0a 634 Gene3D G3DSA:3.30.2010.10 96 188 7.8E-33 T 12-10-2018 R615_01140 7c5b5632c98514b206cc0e35b34fdf0a 634 Pfam PF01435 Peptidase family M48 106 319 2.6E-30 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 R615_17215 7b2a673c001588bc8064fb8aa7aadc05 359 Pfam PF06580 Histidine kinase 159 236 1.3E-22 T 12-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 R615_05555 86b34274503ae543dea365e2cb34b390 184 SUPERFAMILY SSF111126 1 177 5.75E-48 T 12-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily R615_05555 86b34274503ae543dea365e2cb34b390 184 Gene3D G3DSA:3.90.1520.10 1 184 1.7E-65 T 12-10-2018 IPR038158 H-NOX domain superfamily GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 R615_05555 86b34274503ae543dea365e2cb34b390 184 Pfam PF07700 Haem-NO-binding 2 156 2.1E-41 T 12-10-2018 IPR011644 Heme NO-binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 R615_15895 373dedcadb18cf7ca7985dd3690d9ec7 424 Gene3D G3DSA:1.20.1600.10 31 423 6.8E-36 T 12-10-2018 R615_15895 373dedcadb18cf7ca7985dd3690d9ec7 424 Pfam PF02321 Outer membrane efflux protein 281 419 1.5E-6 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_15895 373dedcadb18cf7ca7985dd3690d9ec7 424 Pfam PF02321 Outer membrane efflux protein 41 218 4.4E-16 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_15895 373dedcadb18cf7ca7985dd3690d9ec7 424 SUPERFAMILY SSF56954 15 420 2.09E-44 T 12-10-2018 R615_10805 51d50bdc09e8980eb3982051d1234e80 187 Pfam PF00156 Phosphoribosyl transferase domain 20 169 5.9E-21 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_10805 51d50bdc09e8980eb3982051d1234e80 187 SUPERFAMILY SSF53271 18 185 5.11E-41 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_10805 51d50bdc09e8980eb3982051d1234e80 187 Gene3D G3DSA:3.40.50.2020 2 186 9.1E-47 T 12-10-2018 R615_03620 5f5c370ecfe346b6f4b976f13ebd9068 420 Pfam PF01593 Flavin containing amine oxidoreductase 12 287 3.4E-22 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 R615_03620 5f5c370ecfe346b6f4b976f13ebd9068 420 Gene3D G3DSA:3.50.50.60 5 396 1.8E-26 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03620 5f5c370ecfe346b6f4b976f13ebd9068 420 Gene3D G3DSA:1.10.405.20 77 202 1.8E-26 T 12-10-2018 R615_03620 5f5c370ecfe346b6f4b976f13ebd9068 420 SUPERFAMILY SSF51905 3 414 7.03E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_03620 5f5c370ecfe346b6f4b976f13ebd9068 420 Gene3D G3DSA:3.30.70.1990 286 364 1.8E-26 T 12-10-2018 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 Pfam PF01544 CorA-like Mg2+ transporter protein 59 351 6.7E-73 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 Gene3D G3DSA:3.30.460.20 2 162 2.0E-43 T 12-10-2018 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 SUPERFAMILY SSF143865 10 289 4.05E-76 T 12-10-2018 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 Gene3D G3DSA:1.20.58.340 163 277 5.2E-36 T 12-10-2018 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 SUPERFAMILY SSF144083 290 353 2.35E-22 T 12-10-2018 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 Gene3D G3DSA:1.20.58.340 278 355 5.0E-36 T 12-10-2018 R615_13210 f7b1e0b52e79b7a7f125ad264cffeff7 355 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 31 355 8.2E-93 T 12-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 R615_07855 9f43127637a7902dd071d9e34638dd48 386 Gene3D G3DSA:3.40.630.30 176 331 4.7E-8 T 12-10-2018 R615_07855 9f43127637a7902dd071d9e34638dd48 386 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 9 377 1.9E-142 T 12-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition R615_07855 9f43127637a7902dd071d9e34638dd48 386 SUPERFAMILY SSF55729 179 346 7.95E-39 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_05330 c317605af3417722295c8c0f05ae2a6d 376 Pfam PF00268 Ribonucleotide reductase, small chain 32 332 5.5E-51 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05330 c317605af3417722295c8c0f05ae2a6d 376 SUPERFAMILY SSF47240 3 341 5.77E-110 T 12-10-2018 IPR009078 Ferritin-like superfamily R615_05330 c317605af3417722295c8c0f05ae2a6d 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 12-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 R615_05330 c317605af3417722295c8c0f05ae2a6d 376 Gene3D G3DSA:1.10.620.20 2 340 4.9E-139 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 TIGRFAM TIGR00077 lspA: signal peptidase II 13 168 2.9E-38 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 Pfam PF01252 Signal peptidase (SPase) II 22 162 5.3E-36 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 107 122 8.2E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 59 67 8.2E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 143 159 8.2E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 13 168 16.453 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_03295 d71828e944a450914e75dee8b0b6aa09 170 ProSitePatterns PS00855 Signal peptidases II signature. 110 122 - T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 R615_01425 b757dc11a90df1523a1f3f9daad56349 496 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 278 461 3.6E-40 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_01425 b757dc11a90df1523a1f3f9daad56349 496 Gene3D G3DSA:1.10.287.950 207 494 5.9E-62 T 12-10-2018 R615_01425 b757dc11a90df1523a1f3f9daad56349 496 SUPERFAMILY SSF58104 189 495 5.62E-70 T 12-10-2018 R615_01425 b757dc11a90df1523a1f3f9daad56349 496 SMART SM00283 233 494 4.1E-68 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 R615_07385 aa76a9486323bfb13739e59a8dbc89b2 147 Pfam PF06841 T4-like virus tail tube protein gp19 9 143 3.1E-41 T 12-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 R615_07385 aa76a9486323bfb13739e59a8dbc89b2 147 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 5 144 6.8E-38 T 12-10-2018 IPR011747 Conserved hypothetical protein CHP02241 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 102 120 3.3E-56 T 12-10-2018 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 28 49 3.3E-56 T 12-10-2018 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 54 71 3.3E-56 T 12-10-2018 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 77 100 3.3E-56 T 12-10-2018 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 157 176 3.3E-56 T 12-10-2018 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 194 217 3.3E-56 T 12-10-2018 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 PIRSF PIRSF002764 1 221 2.1E-77 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 Pfam PF03379 CcmB protein 7 217 8.2E-74 T 12-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 R615_12065 3552c5fed9b5c4ad5971584dad93b105 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 217 4.3E-74 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria R615_04535 4654d3061f91237bb8afc60c452dad1b 268 Pfam PF00849 RNA pseudouridylate synthase 11 169 3.7E-35 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_04535 4654d3061f91237bb8afc60c452dad1b 268 Gene3D G3DSA:3.30.2350.10 1 224 1.1E-59 T 12-10-2018 R615_04535 4654d3061f91237bb8afc60c452dad1b 268 SUPERFAMILY SSF55120 2 235 2.88E-60 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 R615_07595 8d310648780c2590b69c490bf6cfa618 161 Pfam PF10675 Protein of unknown function (DUF2489) 16 149 2.3E-36 T 12-10-2018 IPR019617 Domain of unknown function DUF2489 R615_05390 b89bfede12216e9c02309434e748116a 115 Pfam PF04219 Protein of unknown function, DUF 14 100 1.5E-33 T 12-10-2018 IPR007335 Protein of unknown function DUF413 R615_03225 4a4b4f01a1e3319f6e6077a3cd246b1f 92 Gene3D G3DSA:3.40.50.2300 4 91 4.9E-18 T 12-10-2018 R615_03225 4a4b4f01a1e3319f6e6077a3cd246b1f 92 SUPERFAMILY SSF52172 5 89 6.26E-17 T 12-10-2018 IPR011006 CheY-like superfamily R615_03225 4a4b4f01a1e3319f6e6077a3cd246b1f 92 SMART SM00448 4 92 0.0055 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_03225 4a4b4f01a1e3319f6e6077a3cd246b1f 92 Pfam PF00072 Response regulator receiver domain 6 85 7.2E-13 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 R615_07585 4f27b094b1395e93745aeae5574aad0b 331 SMART SM00267 153 329 1.4E-43 T 12-10-2018 IPR000160 GGDEF domain R615_07585 4f27b094b1395e93745aeae5574aad0b 331 Gene3D G3DSA:3.30.70.270 155 327 3.1E-47 T 12-10-2018 R615_07585 4f27b094b1395e93745aeae5574aad0b 331 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 324 1.8E-36 T 12-10-2018 IPR000160 GGDEF domain R615_07585 4f27b094b1395e93745aeae5574aad0b 331 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 162 325 3.7E-37 T 12-10-2018 IPR000160 GGDEF domain R615_07585 4f27b094b1395e93745aeae5574aad0b 331 SUPERFAMILY SSF55073 169 328 1.02E-38 T 12-10-2018 IPR029787 Nucleotide cyclase R615_07585 4f27b094b1395e93745aeae5574aad0b 331 SUPERFAMILY SSF55781 12 151 1.48E-8 T 12-10-2018 R615_07585 4f27b094b1395e93745aeae5574aad0b 331 Gene3D G3DSA:3.30.450.40 1 154 1.4E-27 T 12-10-2018 IPR029016 GAF-like domain superfamily R615_17370 497ee49450620c7c752d334bb1549281 202 Gene3D G3DSA:1.20.950.20 5 174 2.2E-16 T 12-10-2018 R615_17370 497ee49450620c7c752d334bb1549281 202 SUPERFAMILY SSF81342 9 189 8.63E-34 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 R615_17370 497ee49450620c7c752d334bb1549281 202 Pfam PF01292 Prokaryotic cytochrome b561 13 186 9.9E-20 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 R615_04320 2553dc254900b4db667a709ea755dfe2 467 PIRSF PIRSF006060 1 463 2.0E-64 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 R615_04320 2553dc254900b4db667a709ea755dfe2 467 TIGRFAM TIGR00908 2A0305: ethanolamine permease 11 452 1.3E-145 T 12-10-2018 IPR004757 Ethanolamine permease R615_04320 2553dc254900b4db667a709ea755dfe2 467 Pfam PF13520 Amino acid permease 30 416 2.9E-34 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 R615_04320 2553dc254900b4db667a709ea755dfe2 467 Gene3D G3DSA:1.20.1740.10 15 463 2.4E-48 T 12-10-2018 R615_00075 1e4ef6b0610288b24c3373581a778e53 121 Gene3D G3DSA:2.170.150.70 3 117 7.9E-29 T 12-10-2018 R615_00075 1e4ef6b0610288b24c3373581a778e53 121 SUPERFAMILY SSF51316 1 112 2.2E-28 T 12-10-2018 IPR011057 Mss4-like superfamily R615_00075 1e4ef6b0610288b24c3373581a778e53 121 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 102 4.1E-10 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 R615_06790 f68e229903bcf2e9b315b55d5314b7f5 152 SUPERFAMILY SSF48619 19 100 7.82E-8 T 12-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 R615_15940 c9c24c32f26fde2102ad196651d182f1 289 SUPERFAMILY SSF103481 44 142 2.48E-16 T 12-10-2018 R615_15940 c9c24c32f26fde2102ad196651d182f1 289 Pfam PF00892 EamA-like transporter family 9 138 7.8E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_15940 c9c24c32f26fde2102ad196651d182f1 289 Pfam PF00892 EamA-like transporter family 154 284 3.3E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_15940 c9c24c32f26fde2102ad196651d182f1 289 SUPERFAMILY SSF103481 196 286 6.02E-10 T 12-10-2018 R615_01845 6b07afa9560df5ef8eb8ba0066b0a194 1320 Pfam PF01476 LysM domain 1233 1279 2.1E-6 T 12-10-2018 IPR018392 LysM domain R615_01845 6b07afa9560df5ef8eb8ba0066b0a194 1320 Gene3D G3DSA:3.10.350.10 1231 1279 4.2E-8 T 12-10-2018 IPR036779 LysM domain superfamily R615_15645 f09fdbff4a2bb73dfee7bec0212af87c 207 SUPERFAMILY SSF55729 14 160 2.17E-9 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_15645 f09fdbff4a2bb73dfee7bec0212af87c 207 Gene3D G3DSA:3.40.630.30 2 178 1.9E-10 T 12-10-2018 R615_09110 c912403ab590063ea738068c52d31635 299 Gene3D G3DSA:1.20.1510.10 123 297 5.2E-11 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09110 c912403ab590063ea738068c52d31635 299 SUPERFAMILY SSF161111 121 295 1.96E-31 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily R615_09110 c912403ab590063ea738068c52d31635 299 Pfam PF01545 Cation efflux family 128 295 4.0E-13 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 R615_09110 c912403ab590063ea738068c52d31635 299 SUPERFAMILY SSF55008 34 96 3.93E-7 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 R615_00695 bc5300339674dea579c7d5fc00103e52 347 PIRSF PIRSF003097 48 344 4.8E-68 T 12-10-2018 IPR004513 Cell division protein FtsX GO:0016021 R615_02825 77018b6903a4519a7adccaf1e3541cf2 344 SUPERFAMILY SSF48452 197 326 3.3E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_02825 77018b6903a4519a7adccaf1e3541cf2 344 Gene3D G3DSA:1.25.40.10 181 344 3.8E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_09475 519556db3e7ab7c7b9e569c44825c6a1 244 Pfam PF04333 MlaA lipoprotein 32 223 1.4E-71 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 R615_09475 519556db3e7ab7c7b9e569c44825c6a1 244 PRINTS PR01805 VacJ lipoprotein signature 50 66 4.6E-29 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 R615_09475 519556db3e7ab7c7b9e569c44825c6a1 244 PRINTS PR01805 VacJ lipoprotein signature 33 46 4.6E-29 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 R615_09475 519556db3e7ab7c7b9e569c44825c6a1 244 PRINTS PR01805 VacJ lipoprotein signature 137 154 4.6E-29 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 R615_09475 519556db3e7ab7c7b9e569c44825c6a1 244 PRINTS PR01805 VacJ lipoprotein signature 101 118 4.6E-29 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 R615_16990 dafce68391ea8e35b1efe8a621bc7c0e 228 Pfam PF04172 LrgB-like family 16 228 4.8E-65 T 12-10-2018 IPR007300 CidB/LrgB family R615_12200 2f2755272738e28512987b44c32337b8 264 Pfam PF13174 Tetratricopeptide repeat 90 125 9.4E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 R615_12200 2f2755272738e28512987b44c32337b8 264 Gene3D G3DSA:1.25.40.10 55 264 2.4E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 R615_12200 2f2755272738e28512987b44c32337b8 264 SUPERFAMILY SSF81901 54 242 2.35E-6 T 12-10-2018 R615_12490 f5c99725179769ca2880e797e96c3d7a 374 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 10 361 7.5E-72 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 R615_12490 f5c99725179769ca2880e797e96c3d7a 374 SUPERFAMILY SSF51395 5 360 2.38E-100 T 12-10-2018 R615_12490 f5c99725179769ca2880e797e96c3d7a 374 Gene3D G3DSA:3.20.20.70 7 371 5.1E-108 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 R615_04650 c6606d61d3cfb754bd2cba0fa403d231 410 Pfam PF06114 IrrE N-terminal-like domain 255 377 3.0E-12 T 12-10-2018 IPR010359 IrrE N-terminal-like domain R615_13460 b633262b5ad7a17eb34b55368b3856ae 109 Pfam PF09951 Protein of unknown function (DUF2185) 22 104 2.3E-35 T 12-10-2018 IPR018689 Domain of unknown function DUF2185 R615_14215 ed60807826ae47ec248a51b37387bccb 133 Gene3D G3DSA:3.40.50.2020 11 131 8.5E-18 T 12-10-2018 R615_14215 ed60807826ae47ec248a51b37387bccb 133 SUPERFAMILY SSF53271 23 125 5.11E-22 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like R615_14215 ed60807826ae47ec248a51b37387bccb 133 Pfam PF00156 Phosphoribosyl transferase domain 36 124 2.0E-9 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 R615_01860 2e920e8374e75508b2f9c76c239c846d 1845 Pfam PF07581 The GLUG motif 621 647 0.0023 T 12-10-2018 IPR011493 GLUG R615_01860 2e920e8374e75508b2f9c76c239c846d 1845 Pfam PF07581 The GLUG motif 593 620 3.8E-5 T 12-10-2018 IPR011493 GLUG R615_01860 2e920e8374e75508b2f9c76c239c846d 1845 Gene3D G3DSA:2.160.20.110 92 309 8.4E-42 T 12-10-2018 R615_01860 2e920e8374e75508b2f9c76c239c846d 1845 Gene3D G3DSA:2.160.20.110 502 730 1.4E-38 T 12-10-2018 R615_01860 2e920e8374e75508b2f9c76c239c846d 1845 Gene3D G3DSA:2.160.20.110 1383 1560 1.7E-40 T 12-10-2018 R615_01860 2e920e8374e75508b2f9c76c239c846d 1845 Gene3D G3DSA:2.160.20.110 931 1173 1.7E-42 T 12-10-2018 R615_07450 120a1b1d747de80cf3724e7d0ab19dec 145 Gene3D G3DSA:3.40.630.30 2 144 2.3E-29 T 12-10-2018 R615_07450 120a1b1d747de80cf3724e7d0ab19dec 145 Pfam PF13508 Acetyltransferase (GNAT) domain 51 124 8.1E-12 T 12-10-2018 IPR000182 GNAT domain R615_07450 120a1b1d747de80cf3724e7d0ab19dec 145 SUPERFAMILY SSF55729 1 131 1.06E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_06035 11285dbe3d951e0c1db063a1fbfd664f 129 Pfam PF09842 Predicted membrane protein (DUF2069) 9 118 1.4E-27 T 12-10-2018 IPR018643 Protein of unknown function DUF2069, membrane R615_00830 6cdee58c108bb52332b0b650b80552c9 122 Pfam PF02036 SCP-2 sterol transfer family 21 114 3.1E-5 T 12-10-2018 IPR003033 SCP2 sterol-binding domain R615_00830 6cdee58c108bb52332b0b650b80552c9 122 Gene3D G3DSA:3.30.1050.10 10 122 7.9E-8 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily R615_08985 bcdb954239f625340320cdc46031d9bd 445 Pfam PF13520 Amino acid permease 16 385 4.0E-36 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 R615_08985 bcdb954239f625340320cdc46031d9bd 445 Gene3D G3DSA:1.20.1740.10 10 444 4.3E-78 T 12-10-2018 R615_08985 bcdb954239f625340320cdc46031d9bd 445 PIRSF PIRSF006060 1 445 2.6E-64 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 R615_01370 9bf1f286a9db8e15b83e66df1352fce8 39 Pfam PF13230 Glutamine amidotransferases class-II 1 31 4.1E-9 T 12-10-2018 IPR026869 Putative glutamine amidotransferase type 2 R615_01370 9bf1f286a9db8e15b83e66df1352fce8 39 Gene3D G3DSA:3.60.20.10 1 38 8.9E-6 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal R615_14125 6e7eaaf966d1cc6b33dcb05ff2286267 334 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 261 267 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 R615_14125 6e7eaaf966d1cc6b33dcb05ff2286267 334 Pfam PF05175 Methyltransferase small domain 166 328 1.8E-55 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 R615_14125 6e7eaaf966d1cc6b33dcb05ff2286267 334 Pfam PF08468 Methyltransferase small domain N-terminal 7 150 5.8E-29 T 12-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 R615_14125 6e7eaaf966d1cc6b33dcb05ff2286267 334 Gene3D G3DSA:3.40.50.150 156 332 4.3E-50 T 12-10-2018 R615_14125 6e7eaaf966d1cc6b33dcb05ff2286267 334 Gene3D G3DSA:3.40.50.150 1 152 1.3E-19 T 12-10-2018 R615_14125 6e7eaaf966d1cc6b33dcb05ff2286267 334 SUPERFAMILY SSF53335 159 325 7.66E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_02765 6491ef1a5d921b339c14835e224e872c 85 SUPERFAMILY SSF55166 15 68 5.34E-5 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 R615_13365 a90d1883ae582279313c1a66d6f177e9 283 Pfam PF01551 Peptidase family M23 181 274 3.3E-32 T 12-10-2018 IPR016047 Peptidase M23 R615_13365 a90d1883ae582279313c1a66d6f177e9 283 Gene3D G3DSA:2.70.70.10 124 281 3.0E-48 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_13365 a90d1883ae582279313c1a66d6f177e9 283 SUPERFAMILY SSF51261 147 278 4.55E-55 T 12-10-2018 IPR011055 Duplicated hybrid motif R615_02285 2c8a7a3a13374c72c83bbd3f36c16172 116 Hamap MF_00599 Cell division protein FtsB [ftsB]. 21 115 19.417 T 12-10-2018 IPR023081 Cell division protein FtsB R615_02285 2c8a7a3a13374c72c83bbd3f36c16172 116 Pfam PF04977 Septum formation initiator 36 114 3.1E-16 T 12-10-2018 IPR007060 Septum formation initiator FtsL/DivIC R615_10560 a25e3f60d0de76c985d6866cf1d17466 279 Gene3D G3DSA:3.40.30.10 113 273 1.0E-26 T 12-10-2018 R615_10560 a25e3f60d0de76c985d6866cf1d17466 279 Pfam PF00578 AhpC/TSA family 121 252 3.7E-18 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 R615_10560 a25e3f60d0de76c985d6866cf1d17466 279 SUPERFAMILY SSF52833 120 273 4.23E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily R615_15750 e1d89fff9fc65dba20b4940796d07295 140 SMART SM00116 86 134 1.3E-4 T 12-10-2018 IPR000644 CBS domain R615_15750 e1d89fff9fc65dba20b4940796d07295 140 SMART SM00116 11 59 8.0E-6 T 12-10-2018 IPR000644 CBS domain R615_15750 e1d89fff9fc65dba20b4940796d07295 140 Pfam PF00571 CBS domain 4 56 8.8E-13 T 12-10-2018 IPR000644 CBS domain R615_15750 e1d89fff9fc65dba20b4940796d07295 140 Pfam PF00571 CBS domain 86 132 2.5E-8 T 12-10-2018 IPR000644 CBS domain R615_15750 e1d89fff9fc65dba20b4940796d07295 140 SUPERFAMILY SSF54631 1 133 6.95E-27 T 12-10-2018 R615_15750 e1d89fff9fc65dba20b4940796d07295 140 Gene3D G3DSA:3.10.580.10 1 140 5.7E-32 T 12-10-2018 R615_10365 87060cd4fc35fc7b8b4d156e74a8f872 94 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 7 93 2.8E-35 T 12-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 R615_11570 3f26cf09be160f51820c9b9fc3131f26 509 Pfam PF03806 AbgT putative transporter family 14 508 5.6E-185 T 12-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 R615_06120 503aef46ade2748a846d5872f4d698e5 88 SUPERFAMILY SSF118001 12 79 1.96E-23 T 12-10-2018 IPR036685 YehU-like superfamily R615_06120 503aef46ade2748a846d5872f4d698e5 88 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 12 73 1.0E-11 T 12-10-2018 IPR010648 Uncharacterised protein family UPF0270 R615_06120 503aef46ade2748a846d5872f4d698e5 88 Pfam PF06794 Uncharacterised protein family (UPF0270) 13 76 2.6E-25 T 12-10-2018 IPR010648 Uncharacterised protein family UPF0270 R615_06120 503aef46ade2748a846d5872f4d698e5 88 Gene3D G3DSA:1.10.10.610 10 84 8.1E-27 T 12-10-2018 IPR036685 YehU-like superfamily R615_13810 8af9b49b0d3404d3a64ab89948279f37 222 Pfam PF04012 PspA/IM30 family 7 181 6.7E-16 T 12-10-2018 IPR007157 PspA/IM30 R615_16435 471d0cd697910a6d7c7f780cf94001c8 174 Pfam PF07484 Phage Tail Collar Domain 7 63 1.1E-27 T 12-10-2018 IPR011083 Phage tail collar domain R615_16435 471d0cd697910a6d7c7f780cf94001c8 174 SUPERFAMILY SSF88874 1 168 9.59E-51 T 12-10-2018 R615_16435 471d0cd697910a6d7c7f780cf94001c8 174 Gene3D G3DSA:3.90.1340.10 2 59 1.2E-19 T 12-10-2018 IPR037053 Phage tail collar domain superfamily R615_15620 f728960297f46465f506546b02c0e9b7 106 Pfam PF14076 Domain of unknown function (DUF4258) 30 104 2.8E-9 T 12-10-2018 IPR025354 Protein of unknown function DUF4258 R615_09520 bde2a3b5a524627c1c91ce3d23fe2994 171 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 141 2.1E-13 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 R615_00290 2a3d0ed3a076f98ea9077a5f2c7a2b92 455 Gene3D G3DSA:3.40.50.200 202 453 3.1E-44 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_00290 2a3d0ed3a076f98ea9077a5f2c7a2b92 455 PRINTS PR00723 Subtilisin serine protease family (S8) signature 400 416 6.8E-6 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_00290 2a3d0ed3a076f98ea9077a5f2c7a2b92 455 PRINTS PR00723 Subtilisin serine protease family (S8) signature 242 255 6.8E-6 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_00290 2a3d0ed3a076f98ea9077a5f2c7a2b92 455 PRINTS PR00723 Subtilisin serine protease family (S8) signature 206 225 6.8E-6 T 12-10-2018 IPR015500 Peptidase S8, subtilisin-related R615_00290 2a3d0ed3a076f98ea9077a5f2c7a2b92 455 SUPERFAMILY SSF52743 188 453 1.22E-44 T 12-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 R615_00290 2a3d0ed3a076f98ea9077a5f2c7a2b92 455 Pfam PF00082 Subtilase family 209 429 4.0E-20 T 12-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 R615_06955 a9f79318f02a21627ca8fed57012623f 160 PIRSF PIRSF003230 7 157 1.1E-47 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 R615_06955 a9f79318f02a21627ca8fed57012623f 160 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 19 116 1.9E-30 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 R615_06955 a9f79318f02a21627ca8fed57012623f 160 Gene3D G3DSA:3.10.129.10 8 155 1.3E-42 T 12-10-2018 R615_06955 a9f79318f02a21627ca8fed57012623f 160 SUPERFAMILY SSF54637 14 148 1.83E-37 T 12-10-2018 IPR029069 HotDog domain superfamily R615_06955 a9f79318f02a21627ca8fed57012623f 160 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 16 148 3.8E-44 T 12-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 R615_06955 a9f79318f02a21627ca8fed57012623f 160 Pfam PF03061 Thioesterase superfamily 30 112 2.6E-17 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 R615_09930 2b4f0d1784666c8628f5c6ef23ce3c53 88 Pfam PF06945 Protein of unknown function (DUF1289) 33 79 2.5E-17 T 12-10-2018 IPR010710 Protein of unknown function DUF1289 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 161 179 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 103 120 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 187 205 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 23 38 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 120 138 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 38 53 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 81 100 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 55 70 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 PRINTS PR01010 Flagellar P-ring protein signature 251 263 5.3E-86 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 Pfam PF02119 Flagellar P-ring protein 23 364 2.3E-139 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_04785 fdf1bcf90b8eef0e187fe75736536b5c 365 Hamap MF_00416 Flagellar P-ring protein [flgI]. 6 365 39.752 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 R615_10715 9efde94ae6499a7a5818ad0dd79e4e70 113 Pfam PF11333 Protein of unknown function (DUF3135) 2 82 4.7E-35 T 12-10-2018 IPR021482 Protein of unknown function DUF3135 R615_16600 faeccff91cc9a2b4c8294b1450a0c797 119 Pfam PF06127 Protein of unknown function (DUF962) 12 106 7.8E-32 T 12-10-2018 IPR009305 Protein of unknown function DUF962 R615_16870 72a820c16cc6cf3d7c0243f1458f17b3 407 Pfam PF09375 Imelysin 59 347 4.4E-28 T 12-10-2018 IPR018976 Imelysin-like domain R615_14105 d39ff9aee07447d7caa3a0791423252a 770 SUPERFAMILY SSF56935 44 729 1.56E-65 T 12-10-2018 R615_14105 d39ff9aee07447d7caa3a0791423252a 770 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 165 8.5E-20 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain R615_14105 d39ff9aee07447d7caa3a0791423252a 770 Gene3D G3DSA:2.40.170.20 350 739 1.5E-20 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily R615_14105 d39ff9aee07447d7caa3a0791423252a 770 Gene3D G3DSA:2.170.130.10 39 176 1.6E-28 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily R615_11770 e0ae0dfbb0a6cd2c5f6fec3dc6517160 81 Pfam PF07023 Protein of unknown function (DUF1315) 4 74 3.3E-25 T 12-10-2018 IPR009749 Protein of unknown function DUF1315 R615_14470 02f7b932cdcc16aa91b714d58934fd7a 327 SUPERFAMILY SSF103481 46 147 2.22E-10 T 12-10-2018 R615_14470 02f7b932cdcc16aa91b714d58934fd7a 327 Pfam PF00892 EamA-like transporter family 157 290 4.3E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_14470 02f7b932cdcc16aa91b714d58934fd7a 327 Pfam PF00892 EamA-like transporter family 14 145 9.9E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 R615_14470 02f7b932cdcc16aa91b714d58934fd7a 327 SUPERFAMILY SSF103481 200 296 4.97E-14 T 12-10-2018 R615_10095 3e7c387876d84f22266a0750b355dcb9 910 Pfam PF05359 Domain of Unknown Function (DUF748) 593 718 1.4E-13 T 12-10-2018 IPR008023 Protein of unknown function DUF748 R615_12410 2b355d9576a7bdc95eaabd8d00ed9577 173 Pfam PF07273 Protein of unknown function (DUF1439) 24 164 7.6E-30 T 12-10-2018 IPR010835 Protein of unknown function DUF1439 R615_12410 2b355d9576a7bdc95eaabd8d00ed9577 173 Gene3D G3DSA:3.15.10.40 15 172 2.8E-17 T 12-10-2018 R615_04750 39fa0006f4b101ba706aac1067e30a70 262 Pfam PF03963 Flagellar hook capping protein - N-terminal region 8 77 1.3E-20 T 12-10-2018 IPR005648 Flagellar hook capping protein R615_04750 39fa0006f4b101ba706aac1067e30a70 262 Pfam PF13861 FlgD Tudor-like domain 87 257 1.1E-14 T 12-10-2018 IPR025963 FlgD Tudor-like domain R615_04750 39fa0006f4b101ba706aac1067e30a70 262 Pfam PF13860 FlgD Ig-like domain 109 161 8.0E-9 T 12-10-2018 IPR025965 FlgD Ig-like domain R615_07920 6990f058b384f17dbd583f47d7698754 278 Pfam PF01738 Dienelactone hydrolase family 127 224 7.6E-9 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 R615_07920 6990f058b384f17dbd583f47d7698754 278 Gene3D G3DSA:3.40.50.1820 21 268 1.4E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_07920 6990f058b384f17dbd583f47d7698754 278 SUPERFAMILY SSF53474 34 255 1.04E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_15080 251f560b41db05a824253afacad2503d 192 Pfam PF02169 LPP20 lipoprotein 42 149 1.8E-10 T 12-10-2018 IPR024952 Lipoprotein LPP20-like R615_00155 ff2d8f49f77146635376dedf08b60bd1 443 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 442 2.2E-96 T 12-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 R615_00155 ff2d8f49f77146635376dedf08b60bd1 443 Gene3D G3DSA:1.20.1600.10 20 443 1.4E-107 T 12-10-2018 R615_00155 ff2d8f49f77146635376dedf08b60bd1 443 SUPERFAMILY SSF56954 21 441 1.03E-85 T 12-10-2018 R615_00155 ff2d8f49f77146635376dedf08b60bd1 443 Pfam PF02321 Outer membrane efflux protein 22 216 4.2E-22 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_00155 ff2d8f49f77146635376dedf08b60bd1 443 Pfam PF02321 Outer membrane efflux protein 240 427 1.8E-37 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 R615_05950 3b9d92468fd1431a21d3c2adf0897106 81 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 4 77 2.3E-28 T 12-10-2018 IPR018680 Protein of unknown function DUF2164 R615_12295 cf9b440fb0b96fdf1c2f5f0ab7c75c21 148 Pfam PF13511 Domain of unknown function (DUF4124) 17 65 3.0E-11 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 R615_14940 e122791ce6e89de30a6159b462c01eaa 404 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 128 347 8.7E-36 T 12-10-2018 IPR018713 Domain of unknown function DUF2236 R615_06405 f5522ae92b3f17dc130123d4fb1338d7 336 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 18 248 2.1E-69 T 12-10-2018 IPR018642 Protein of unknown function DUF2066 R615_04545 c6fb993cef41ea4c7df1681e53cfc98e 936 SUPERFAMILY SSF82171 305 532 2.88E-14 T 12-10-2018 R615_04545 c6fb993cef41ea4c7df1681e53cfc98e 936 Gene3D G3DSA:2.120.10.30 313 556 1.7E-14 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like R615_12075 9c2156d2fcb388d423d524cad2ad43ac 619 Gene3D G3DSA:3.30.750.140 522 613 9.3E-7 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily R615_12075 9c2156d2fcb388d423d524cad2ad43ac 619 Pfam PF02120 Flagellar hook-length control protein FliK 526 601 1.1E-14 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal R615_15715 462a3345cf2386fc897fb8adfd6de1dc 325 SUPERFAMILY SSF158855 56 317 7.06E-49 T 12-10-2018 R615_15715 462a3345cf2386fc897fb8adfd6de1dc 325 Pfam PF03280 Proteobacterial lipase chaperone protein 123 312 7.1E-43 T 12-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 R615_15990 c8c0991f2b286fa3c5c2070246519589 182 Pfam PF11845 Protein of unknown function (DUF3365) 6 176 8.5E-27 T 12-10-2018 IPR021796 Protein of unknown function DUF3365 R615_16935 ef6e3fbbc24963756b5fdafa9a731696 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 257 271 4.3E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_16935 ef6e3fbbc24963756b5fdafa9a731696 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 113 4.3E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_16935 ef6e3fbbc24963756b5fdafa9a731696 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 146 159 4.3E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 R615_16935 ef6e3fbbc24963756b5fdafa9a731696 317 SUPERFAMILY SSF53474 56 316 1.01E-35 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16935 ef6e3fbbc24963756b5fdafa9a731696 317 Gene3D G3DSA:3.40.50.1820 49 317 3.3E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16935 ef6e3fbbc24963756b5fdafa9a731696 317 Pfam PF12146 Serine aminopeptidase, S33 69 300 4.3E-32 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 R615_01665 507ecfa97ffad5af0ab7d23225a7ce81 151 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 146 1.4E-7 T 12-10-2018 IPR002810 NfeD-like, C-terminal domain R615_14445 80f2b32d4c51ebc59885c1631db14b30 501 Pfam PF04293 SpoVR like protein 10 441 2.2E-177 T 12-10-2018 IPR007390 Sporulation stage V, protein R R615_11785 fcc2029138c320b0a145737511589903 294 Gene3D G3DSA:3.40.50.10330 23 288 7.0E-92 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 R615_11785 fcc2029138c320b0a145737511589903 294 Gene3D G3DSA:2.60.200.30 128 265 7.0E-92 T 12-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 R615_11785 fcc2029138c320b0a145737511589903 294 SUPERFAMILY SSF111331 6 289 8.11E-89 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily R615_11785 fcc2029138c320b0a145737511589903 294 Pfam PF01513 ATP-NAD kinase 6 272 8.0E-64 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 R615_11785 fcc2029138c320b0a145737511589903 294 Hamap MF_00361 NAD kinase [nadK]. 5 288 34.033 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 R615_15505 ba29c171a5f9f0ee34a3eabe8a3d5434 483 SUPERFAMILY SSF51556 34 453 5.96E-66 T 12-10-2018 IPR032466 Metal-dependent hydrolase R615_15505 ba29c171a5f9f0ee34a3eabe8a3d5434 483 Pfam PF00962 Adenosine/AMP deaminase 261 440 1.5E-36 T 12-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 R615_08205 1240a2bff3e881ddcf8d4821a7123d99 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 8 416 9.1E-152 T 12-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 R615_08205 1240a2bff3e881ddcf8d4821a7123d99 416 Pfam PF02687 FtsX-like permease family 303 409 9.6E-14 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 R615_08205 1240a2bff3e881ddcf8d4821a7123d99 416 Pfam PF12704 MacB-like periplasmic core domain 31 213 2.4E-13 T 12-10-2018 IPR025857 MacB-like periplasmic core domain R615_13310 01b04efa8ed020a23f84793ac088f195 113 Pfam PF08850 Domain of unknown function (DUF1820) 10 103 4.8E-38 T 12-10-2018 IPR014949 Protein of unknown function DUF1820 R615_08080 579b0b46f5feb815d54f5dfb9559406b 597 Pfam PF03583 Secretory lipase 129 397 3.7E-48 T 12-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 R615_08080 579b0b46f5feb815d54f5dfb9559406b 597 Gene3D G3DSA:3.40.50.1820 36 392 1.8E-97 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_08080 579b0b46f5feb815d54f5dfb9559406b 597 Gene3D G3DSA:1.10.260.130 231 321 1.8E-97 T 12-10-2018 R615_08080 579b0b46f5feb815d54f5dfb9559406b 597 SUPERFAMILY SSF53474 126 395 1.32E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_11225 1cb47d959af52ceae6639f20ec7469a7 225 SUPERFAMILY SSF48150 37 181 7.69E-33 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 R615_11225 1cb47d959af52ceae6639f20ec7469a7 225 Pfam PF03352 Methyladenine glycosylase 42 133 6.8E-16 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 R615_11225 1cb47d959af52ceae6639f20ec7469a7 225 Gene3D G3DSA:1.10.340.30 9 155 7.8E-20 T 12-10-2018 R615_17055 87da50d748fb19fdd7458b4dbcce5e2d 152 Pfam PF13511 Domain of unknown function (DUF4124) 53 98 6.7E-10 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 R615_15115 f6023f5884684b7cf5986733a591d1c5 225 Pfam PF04298 Putative neutral zinc metallopeptidase 4 223 2.8E-59 T 12-10-2018 IPR007395 Putative neutral zinc metallopeptidase R615_07845 ccbf054ac770c43aaf64db09b7a0d279 361 Gene3D G3DSA:3.40.630.30 1 149 2.1E-26 T 12-10-2018 R615_07845 ccbf054ac770c43aaf64db09b7a0d279 361 Pfam PF00583 Acetyltransferase (GNAT) family 27 123 1.2E-10 T 12-10-2018 IPR000182 GNAT domain R615_07845 ccbf054ac770c43aaf64db09b7a0d279 361 Pfam PF11814 Peptidase_C39 like family 157 360 5.1E-79 T 12-10-2018 IPR021770 Protein of unknown function DUF3335 R615_07845 ccbf054ac770c43aaf64db09b7a0d279 361 SUPERFAMILY SSF55729 1 146 1.43E-27 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase R615_04580 f5c79edc55d2fe4e587d4fc9ec372ced 239 SUPERFAMILY SSF160246 9 70 7.85E-12 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily R615_14765 07e3aa04c243725a22790e7d8f236b78 308 PIRSF PIRSF007580 10 289 1.6E-80 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_14765 07e3aa04c243725a22790e7d8f236b78 308 Pfam PF10118 Predicted metal-dependent hydrolase 26 272 5.7E-88 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_11330 e8a27cf69959c6855b796e373c46eac6 119 SUPERFAMILY SSF46689 10 107 9.85E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 R615_11330 e8a27cf69959c6855b796e373c46eac6 119 Gene3D G3DSA:1.10.10.60 14 99 2.8E-8 T 12-10-2018 R615_11330 e8a27cf69959c6855b796e373c46eac6 119 Pfam PF01527 Transposase 11 94 2.1E-15 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 R615_13740 38f4b38ec345cdf9c6fad1e738809f2b 375 Gene3D G3DSA:3.40.190.170 97 355 3.4E-14 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_16050 c6e3456870e04c96206b0e9a7e2b38bc 293 Pfam PF07859 alpha/beta hydrolase fold 71 269 1.3E-50 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 R615_16050 c6e3456870e04c96206b0e9a7e2b38bc 293 SUPERFAMILY SSF53474 38 290 1.72E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16050 c6e3456870e04c96206b0e9a7e2b38bc 293 Gene3D G3DSA:3.40.50.1820 7 292 1.6E-73 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_16050 c6e3456870e04c96206b0e9a7e2b38bc 293 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 71 87 - T 12-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 R615_13995 368c0ce6b9872a4dae76877cbca442ac 242 Pfam PF03929 PepSY-associated TM region 193 241 5.3E-8 T 12-10-2018 IPR005625 PepSY-associated TM protein R615_08445 c212bcf1a2f2e5facf4dd40c6ce837e7 149 Pfam PF06073 Bacterial protein of unknown function (DUF934) 43 146 8.5E-40 T 12-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 R615_08445 c212bcf1a2f2e5facf4dd40c6ce837e7 149 PIRSF PIRSF030820 3 149 1.7E-45 T 12-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 R615_00570 e9037a06767c55996b1b4427a796f577 618 Gene3D G3DSA:2.130.10.10 35 334 2.5E-8 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 R615_00570 e9037a06767c55996b1b4427a796f577 618 SUPERFAMILY SSF50969 182 615 5.57E-14 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like R615_00320 73538ba4b0c965f30663de959be14c6f 283 Pfam PF03994 Domain of Unknown Function (DUF350) 85 140 4.1E-8 T 12-10-2018 IPR007140 Protein of unknown function DUF350 R615_08425 e56c0f1f46d1a69f74b49019e8a0be2e 104 Gene3D G3DSA:3.30.1050.10 1 104 2.8E-32 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily R615_08425 e56c0f1f46d1a69f74b49019e8a0be2e 104 Pfam PF02036 SCP-2 sterol transfer family 9 102 5.4E-21 T 12-10-2018 IPR003033 SCP2 sterol-binding domain R615_08425 e56c0f1f46d1a69f74b49019e8a0be2e 104 SUPERFAMILY SSF55718 2 102 1.01E-29 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily R615_00550 37283748d12a53ebd4a7b310ec0a2e40 238 SMART SM01144 33 228 2.2E-58 T 12-10-2018 IPR005636 DTW R615_00550 37283748d12a53ebd4a7b310ec0a2e40 238 Pfam PF03942 DTW domain 35 222 5.6E-40 T 12-10-2018 IPR005636 DTW R615_09225 e71d19277efd4055b55080a719bfe2a3 180 Pfam PF01618 MotA/TolQ/ExbB proton channel family 50 162 2.8E-21 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_16505 5d6a35a82f0046440ad27917fd7e7718 195 Pfam PF02325 YGGT family 110 177 5.1E-16 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 R615_16505 5d6a35a82f0046440ad27917fd7e7718 195 Pfam PF02325 YGGT family 14 80 4.3E-15 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 R615_02245 ba2d93ed98529539e2204e7dd16fbdc3 158 SUPERFAMILY SSF52540 3 116 3.22E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_02245 ba2d93ed98529539e2204e7dd16fbdc3 158 Gene3D G3DSA:3.40.50.300 2 138 1.7E-10 T 12-10-2018 R615_01460 7fa8784fe3068e395920eb75900f5670 142 Pfam PF04519 Polymer-forming cytoskeletal 14 114 8.4E-26 T 12-10-2018 IPR007607 Bactofilin A/B R615_05385 075a38776cd142b2ab873244227ed6ce 136 Pfam PF05618 Putative ATP-dependant zinc protease 5 133 1.3E-34 T 12-10-2018 R615_05385 075a38776cd142b2ab873244227ed6ce 136 Gene3D G3DSA:2.40.70.10 2 131 7.2E-35 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily R615_05385 075a38776cd142b2ab873244227ed6ce 136 SUPERFAMILY SSF50630 5 134 4.87E-40 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily R615_09030 67a5b3241034303baa851b3c771f5d00 64 Pfam PF13560 Helix-turn-helix domain 4 54 3.6E-6 T 12-10-2018 R615_09030 67a5b3241034303baa851b3c771f5d00 64 SUPERFAMILY SSF47413 2 56 1.13E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 R615_09030 67a5b3241034303baa851b3c771f5d00 64 Gene3D G3DSA:1.10.260.40 1 63 1.0E-16 T 12-10-2018 R615_14200 42db9f2fd0fb817be549dfde032a666a 295 Pfam PF12118 SprA-related family 95 231 4.7E-50 T 12-10-2018 IPR021973 SprA-related family R615_03035 7363844f180764f7ae90b9badbcfa069 247 Pfam PF04338 Protein of unknown function, DUF481 37 247 1.2E-31 T 12-10-2018 IPR007433 Protein of unknown function DUF481 R615_10785 e6133abe9f3f7cdcb0263d01a97245d0 258 Pfam PF17131 Outer membrane lipoprotein-sorting protein 73 256 2.2E-63 T 12-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein R615_10785 e6133abe9f3f7cdcb0263d01a97245d0 258 Gene3D G3DSA:2.50.20.10 20 256 7.7E-91 T 12-10-2018 R615_16985 8880144ccc2b448409876ed70af8f9de 110 Pfam PF03788 LrgA family 12 104 2.3E-18 T 12-10-2018 IPR005538 LrgA/CidA family GO:0016021 R615_09325 4f7a992f9ff6c94c3bae4ddcd93d712c 178 Pfam PF02620 Uncharacterized ACR, COG1399 66 176 5.2E-18 T 12-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD R615_12875 5d6e419fb894e08c2bf9e0aca5c87ef5 458 Pfam PF01618 MotA/TolQ/ExbB proton channel family 327 437 8.2E-28 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_12875 5d6e419fb894e08c2bf9e0aca5c87ef5 458 PIRSF PIRSF037714 1 458 4.2E-148 T 12-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein R615_06495 4a427dae7a4f718990c9c5793a1f675f 374 Pfam PF14088 Domain of unknown function (DUF4268) 228 362 9.9E-38 T 12-10-2018 IPR025364 Domain of unknown function DUF4268 R615_06495 4a427dae7a4f718990c9c5793a1f675f 374 Gene3D G3DSA:3.40.1350.10 22 112 3.6E-8 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 R615_01865 778d3c60a32f3ee59a09b73dbb5ece2e 701 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 267 692 1.9E-25 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit R615_13620 bf1d1714383dc17b5a4b61ac6bf6b71d 662 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 497 3.3E-182 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 R615_13620 bf1d1714383dc17b5a4b61ac6bf6b71d 662 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 497 2.2E-146 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 R615_02025 3f574798fae393f5912285a30c2a89cd 99 PIRSF PIRSF029218 3 99 7.5E-30 T 12-10-2018 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 R615_02025 3f574798fae393f5912285a30c2a89cd 99 Gene3D G3DSA:3.30.2310.20 1 99 3.3E-29 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily R615_02025 3f574798fae393f5912285a30c2a89cd 99 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 7 94 1.6E-21 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family R615_04130 9e58c3999894b763f156fa9b8a5b58f0 417 Pfam PF12048 Protein of unknown function (DUF3530) 18 407 3.8E-110 T 12-10-2018 IPR022529 Protein of unknown function DUF3530 R615_05565 80a9d6d392542347ac35c75d5f0db7b1 559 SUPERFAMILY SSF53474 40 353 1.97E-31 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold R615_05565 80a9d6d392542347ac35c75d5f0db7b1 559 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 51 206 2.8E-15 T 12-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 R615_00300 10d52c48ab641835c6a8305685dda7f9 40 Gene3D G3DSA:3.40.50.10490 1 39 2.6E-5 T 12-10-2018 R615_11445 0dd309bd5296f3f1a7eb74df55c04ebe 64 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 48 6.0E-7 T 12-10-2018 IPR007040 Ribosome modulation factor R615_11445 0dd309bd5296f3f1a7eb74df55c04ebe 64 Gene3D G3DSA:1.10.10.620 1 63 3.7E-21 T 12-10-2018 IPR023200 Ribosome modulation factor domain superfamily R615_11445 0dd309bd5296f3f1a7eb74df55c04ebe 64 Pfam PF04957 Ribosome modulation factor 1 52 3.7E-22 T 12-10-2018 IPR007040 Ribosome modulation factor R615_02065 1521d869aede8033e765181272fa07d0 158 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 6 148 6.0E-20 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 R615_02065 1521d869aede8033e765181272fa07d0 158 Pfam PF04093 rod shape-determining protein MreD 8 146 1.3E-14 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 R615_06660 17deb34ba86fc11528e0c27136c87ecf 492 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 328 462 1.2E-11 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain R615_06660 17deb34ba86fc11528e0c27136c87ecf 492 Pfam PF01943 Polysaccharide biosynthesis protein 10 272 4.5E-26 T 12-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 R615_15035 c57ccf4cf02b601cce1e07e8fbaf5e85 121 Pfam PF16068 Domain of unknown function (DUF4810) 27 111 1.1E-26 T 12-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats R615_15035 c57ccf4cf02b601cce1e07e8fbaf5e85 121 PIRSF PIRSF020555 1 121 6.0E-27 T 12-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats R615_12905 b6af89fc9c8ad4f4263ff5081267e3cf 349 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 33 349 1.8E-152 T 12-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 R615_12905 b6af89fc9c8ad4f4263ff5081267e3cf 349 PIRSF PIRSF029693 2 349 1.7E-150 T 12-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 R615_17490 dccfba627123b309243477d21d89af6a 638 Pfam PF09369 Domain of unknown function (DUF1998) 497 599 3.6E-8 T 12-10-2018 IPR018973 DEAD/DEAH-box helicase, putative R615_13385 7bb76505241a0fbca3ff75293fc4b9d2 260 Pfam PF03799 Cell division protein FtsQ 134 244 1.6E-11 T 12-10-2018 IPR005548 Cell division protein FtsQ/DivIB R615_13385 7bb76505241a0fbca3ff75293fc4b9d2 260 Gene3D G3DSA:3.40.50.11690 131 256 6.3E-23 T 12-10-2018 R615_13385 7bb76505241a0fbca3ff75293fc4b9d2 260 Gene3D G3DSA:3.10.20.310 60 129 4.0E-11 T 12-10-2018 R615_13385 7bb76505241a0fbca3ff75293fc4b9d2 260 Pfam PF08478 POTRA domain, FtsQ-type 62 125 2.4E-8 T 12-10-2018 IPR013685 POTRA domain, FtsQ-type R615_07355 1d7500b99e11815ba75b506fc3b6fbe9 328 Pfam PF03235 Protein of unknown function DUF262 14 112 3.2E-20 T 12-10-2018 IPR004919 Domain of unknown function DUF262 R615_15910 320413e100f5d743b7cb45e46bad1470 228 Pfam PF13795 HupE / UreJ protein 45 195 1.1E-49 T 12-10-2018 IPR032809 Putative HupE/UreJ protein R615_15180 ab80e71e65c722dd8c4bba00e5f6b540 125 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 18 105 4.3E-27 T 12-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 R615_15180 ab80e71e65c722dd8c4bba00e5f6b540 125 Pfam PF03334 Na+/H+ antiporter subunit 18 98 1.4E-24 T 12-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 R615_15745 3c275e1b057d9f7c1d2bc096a0ea2033 95 Pfam PF10719 Late competence development protein ComFB 8 91 4.6E-28 T 12-10-2018 IPR019657 Late competence development protein ComFB R615_04260 ff6e3a89e5b09956f76a4f95c01c0ef6 394 Pfam PF02653 Branched-chain amino acid transport system / permease component 37 337 6.5E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 R615_04260 ff6e3a89e5b09956f76a4f95c01c0ef6 394 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 30 347 2.8E-134 T 12-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC R615_09090 64c34e4a19c60c89623530ccf92a5790 119 Pfam PF02411 MerT mercuric transport protein 8 119 3.5E-51 T 12-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 R615_04825 7ecb54badb1e10a532d49ee7df9b2288 324 SUPERFAMILY SSF64182 6 315 6.91E-41 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily R615_02020 2cbee340acd081c09c1815a6a1e59881 137 Gene3D G3DSA:3.30.70.1290 7 59 1.4E-10 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 R615_00660 63f19080b9501805804e9163d86855b0 301 PIRSF PIRSF026649 1 295 1.1E-79 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 R615_00660 63f19080b9501805804e9163d86855b0 301 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 286 1.2E-47 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 R615_06860 87ded092617bf48aa27998a4748f905e 220 PIRSF PIRSF011491 1 220 4.3E-76 T 12-10-2018 IPR016584 Methyltransferase VrtF-like R615_06860 87ded092617bf48aa27998a4748f905e 220 SUPERFAMILY SSF53335 23 183 2.57E-7 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_15970 038c518fe8b5a9a4ba029fe917f6d94f 238 Pfam PF10099 Anti-sigma-K factor rskA 62 223 1.1E-18 T 12-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 R615_03885 d45995ecc9a0095c835998429192840e 1138 SUPERFAMILY SSF53335 498 921 1.1E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase R615_03885 d45995ecc9a0095c835998429192840e 1138 Pfam PF01555 DNA methylase 522 911 8.4E-27 T 12-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 R615_07730 3bfc847f55b016b2c68312c5fe39b1cb 58 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 6 44 7.5E-10 T 12-10-2018 IPR008621 Cbb3-type cytochrome oxidase component R615_07805 a6430461131968a983def46c3781719a 296 Pfam PF04261 Dyp-type peroxidase family 38 288 3.6E-50 T 12-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 R615_07805 a6430461131968a983def46c3781719a 296 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 41 289 1.3E-51 T 12-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 R615_07805 a6430461131968a983def46c3781719a 296 SUPERFAMILY SSF54909 3 293 5.01E-72 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel R615_11495 852da3a9cea06d28e02985cfe7998959 561 Pfam PF13584 Oxygen tolerance 22 454 1.2E-101 T 12-10-2018 IPR025738 Aerotolerance-related protein BatD R615_10700 1e77a05082ee3808cc16bdfbe98198b6 64 Pfam PF06945 Protein of unknown function (DUF1289) 7 52 6.0E-20 T 12-10-2018 IPR010710 Protein of unknown function DUF1289 R615_08555 dfa18715dba550ac5a728fe15f77ee9a 307 Pfam PF13271 Domain of unknown function (DUF4062) 10 88 1.8E-8 T 12-10-2018 IPR025139 Domain of unknown function DUF4062 R615_04300 70233f9a06d26390444fe2359131ff26 192 Pfam PF03358 NADPH-dependent FMN reductase 3 122 5.1E-20 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 R615_04300 70233f9a06d26390444fe2359131ff26 192 SUPERFAMILY SSF52218 3 161 1.05E-26 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_04300 70233f9a06d26390444fe2359131ff26 192 Gene3D G3DSA:3.40.50.360 1 189 4.0E-32 T 12-10-2018 IPR029039 Flavoprotein-like superfamily R615_05820 b6624763e7fe9c394bdb993924fe288d 174 Pfam PF01863 Protein of unknown function DUF45 103 155 1.6E-11 T 12-10-2018 IPR002725 Protein of unknown function DUF45 R615_05820 b6624763e7fe9c394bdb993924fe288d 174 Gene3D G3DSA:3.30.2010.10 80 169 8.5E-7 T 12-10-2018 R615_11645 1432f3588ec1d41b1ef7ca81bda5e1b2 180 Pfam PF11157 Protein of unknown function (DUF2937) 6 164 4.4E-48 T 12-10-2018 IPR022584 Protein of unknown function DUF2937 R615_12265 203f66b9bfc7f6c6abe9f504facff2c5 635 TIGRFAM TIGR03545 TIGR03545: TIGR03545 family protein 4 546 4.1E-117 T 12-10-2018 IPR019934 Conserved hypothetical protein CHP03545 R615_06180 f0f1c78e9ac40428f7deb1445e66343a 280 Pfam PF02616 Segregation and condensation protein ScpA 65 275 6.3E-34 T 12-10-2018 IPR003768 Segregation and condensation protein A R615_06180 f0f1c78e9ac40428f7deb1445e66343a 280 Hamap MF_01805 Segregation and condensation protein A [scpA]. 48 279 22.396 T 12-10-2018 IPR003768 Segregation and condensation protein A R615_13815 7e071bb7ed3983b4817b547a0043ad05 215 Pfam PF07290 Protein of unknown function (DUF1449) 9 207 1.5E-53 T 12-10-2018 IPR010840 Protein of unknown function DUF1449 R615_05110 ccb7216ba76a09af148ccfa6dd0aaad6 368 Pfam PF02108 Flagellar assembly protein FliH 137 260 5.4E-19 T 12-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE R615_16000 5fe5eb55865957b6283fc790b424e089 118 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 35 111 7.7E-24 T 12-10-2018 IPR011846 Cyd operon protein YbgE R615_05200 0f34ab21012aef6fffe74b4162e9ca9d 156 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 63 131 8.9E-20 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 R615_05200 0f34ab21012aef6fffe74b4162e9ca9d 156 Pfam PF04347 Flagellar biosynthesis protein, FliO 75 154 1.6E-17 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 R615_15160 60e1211eb04c3635a6ccf637fa6eaade 190 Pfam PF07238 PilZ domain 89 173 7.3E-10 T 12-10-2018 IPR009875 PilZ domain GO:0035438 R615_10565 0b5f6e859f5b281c3f5c4eea21949177 117 PIRSF PIRSF029611 1 117 1.5E-65 T 12-10-2018 IPR016928 Uncharacterised conserved protein UCP029611 R615_10565 0b5f6e859f5b281c3f5c4eea21949177 117 Pfam PF03692 Putative zinc- or iron-chelating domain 19 82 3.7E-10 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein R615_03635 4ed19d58f28ee376a33b0a6e3b5f33a3 320 Pfam PF00487 Fatty acid desaturase 60 280 8.5E-20 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_03635 4ed19d58f28ee376a33b0a6e3b5f33a3 320 PRINTS PR00075 Fatty acid desaturase family 1 signature 117 146 6.7E-15 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_03635 4ed19d58f28ee376a33b0a6e3b5f33a3 320 PRINTS PR00075 Fatty acid desaturase family 1 signature 80 100 6.7E-15 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_03635 4ed19d58f28ee376a33b0a6e3b5f33a3 320 PRINTS PR00075 Fatty acid desaturase family 1 signature 256 270 6.7E-15 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_03635 4ed19d58f28ee376a33b0a6e3b5f33a3 320 PRINTS PR00075 Fatty acid desaturase family 1 signature 213 234 6.7E-15 T 12-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 R615_15260 f8f43f656d34ca92e74d1a9657bbe787 184 Pfam PF05137 Fimbrial assembly protein (PilN) 100 173 6.0E-21 T 12-10-2018 IPR007813 Fimbrial assembly PilN R615_15850 6580108eb3a46daf8902764a98a58d67 492 SUPERFAMILY SSF56349 223 467 8.24E-15 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 R615_15850 6580108eb3a46daf8902764a98a58d67 492 Gene3D G3DSA:1.10.443.10 226 478 1.6E-17 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 R615_11205 209655d7524b750828b91cbaa1c0dffa 378 Gene3D G3DSA:3.40.190.170 106 265 1.2E-8 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_11160 eced3dff56167c0a2b0c0713fadccca6 626 Pfam PF13387 Domain of unknown function (DUF4105) 128 299 9.2E-58 T 12-10-2018 IPR025178 Domain of unknown function DUF4105 R615_00645 19492e87953c94790eb73ec4b433b7aa 93 Pfam PF13490 Putative zinc-finger 4 38 1.1E-5 T 12-10-2018 IPR027383 Putative zinc-finger R615_02565 d614837d42e0bd9d37aafdf33f19db41 265 Gene3D G3DSA:2.60.40.2250 8 246 8.7E-73 T 12-10-2018 R615_02565 d614837d42e0bd9d37aafdf33f19db41 265 SUPERFAMILY SSF54001 100 245 1.18E-35 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily R615_02565 d614837d42e0bd9d37aafdf33f19db41 265 Pfam PF01841 Transglutaminase-like superfamily 116 217 1.5E-22 T 12-10-2018 IPR002931 Transglutaminase-like R615_02565 d614837d42e0bd9d37aafdf33f19db41 265 SMART SM00460 159 219 4.6E-13 T 12-10-2018 IPR002931 Transglutaminase-like R615_02565 d614837d42e0bd9d37aafdf33f19db41 265 Gene3D G3DSA:3.10.620.30 78 239 8.7E-73 T 12-10-2018 R615_11365 a7bcd60db43a3c8c98feffacfd64c903 251 Pfam PF01925 Sulfite exporter TauE/SafE 9 248 1.3E-36 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 R615_10685 ec3d989a3ae22db96fa421a6c2badadb 225 Pfam PF11747 Killing trait 7 74 9.6E-30 T 12-10-2018 IPR021070 Killing trait, RebB R615_16310 05861601a7deffd1fcc80169f55778b0 284 Gene3D G3DSA:3.40.190.10 71 237 2.0E-6 T 12-10-2018 R615_16310 05861601a7deffd1fcc80169f55778b0 284 Gene3D G3DSA:3.40.190.10 102 208 2.0E-6 T 12-10-2018 R615_16310 05861601a7deffd1fcc80169f55778b0 284 SUPERFAMILY SSF53850 37 241 6.27E-18 T 12-10-2018 R615_03515 232da2331dc3d49f41bc02211c73e374 385 Pfam PF00487 Fatty acid desaturase 58 333 9.4E-29 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_05310 62eb956ea5f983f011ed08cc9671e1a3 158 Pfam PF06127 Protein of unknown function (DUF962) 4 152 3.2E-25 T 12-10-2018 IPR009305 Protein of unknown function DUF962 R615_03650 5a06dcc8618bf7c47650987f72ba89ca 338 Pfam PF08349 Protein of unknown function (DUF1722) 211 329 3.5E-41 T 12-10-2018 IPR013560 Domain of unknown function DUF1722 R615_03650 5a06dcc8618bf7c47650987f72ba89ca 338 Pfam PF04463 Protein of unknown function (DUF523) 25 167 4.0E-33 T 12-10-2018 IPR007553 Domain of unknown function DUF523 R615_03650 5a06dcc8618bf7c47650987f72ba89ca 338 PIRSF PIRSF037004 18 338 4.2E-115 T 12-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 R615_06030 032718816059cce4528a9138b6b96925 147 Pfam PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ 6 144 3.0E-68 T 12-10-2018 IPR019884 YtoQ family protein R615_06030 032718816059cce4528a9138b6b96925 147 TIGRFAM TIGR03646 YtoQ_fam: YtoQ family protein 3 145 1.5E-66 T 12-10-2018 IPR019884 YtoQ family protein R615_03500 e88dce54c849d9816ca8128812e2dec3 633 SUPERFAMILY SSF52317 101 353 6.41E-5 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like R615_09965 dc0ebb5e85648a9e7b8f12268e02bb86 248 Gene3D G3DSA:3.30.950.30 80 237 2.1E-23 T 12-10-2018 IPR038461 Schlafen, AAA domain superfamily R615_09965 dc0ebb5e85648a9e7b8f12268e02bb86 248 Pfam PF04326 Putative DNA-binding domain 94 229 1.1E-18 T 12-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 R615_03605 4e176888589403416ff8beed3bce5b7a 181 Pfam PF11086 Protein of unknown function (DUF2878) 10 152 1.2E-33 T 12-10-2018 IPR021306 Protein of unknown function DUF2878 R615_02160 88c6d5f26722037a4bff317380f9ec60 152 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 148 9.8E-56 T 12-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 R615_02160 88c6d5f26722037a4bff317380f9ec60 152 Pfam PF02470 MlaD protein 38 115 3.0E-22 T 12-10-2018 IPR003399 Mce/MlaD R615_03845 3e079be7a7f7bede70b0853a7a52e360 144 Pfam PF07696 7TMR-DISM extracellular 2 75 116 1.6E-4 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 R615_09795 3454096465b043df40c2ddc22570c65a 320 Pfam PF01882 Protein of unknown function DUF58 213 289 1.2E-15 T 12-10-2018 IPR002881 Domain of unknown function DUF58 R615_02965 fc5110b0fd0a51e1deb6adbfbfb91a7a 374 SUPERFAMILY SSF53850 65 280 1.74E-14 T 12-10-2018 R615_02965 fc5110b0fd0a51e1deb6adbfbfb91a7a 374 Gene3D G3DSA:3.40.190.10 70 315 1.3E-17 T 12-10-2018 R615_02965 fc5110b0fd0a51e1deb6adbfbfb91a7a 374 Gene3D G3DSA:3.40.190.10 138 246 1.3E-17 T 12-10-2018 R615_02965 fc5110b0fd0a51e1deb6adbfbfb91a7a 374 Pfam PF09084 NMT1/THI5 like 70 281 1.3E-6 T 12-10-2018 IPR015168 SsuA/THI5-like R615_01855 4bb71c38785527d2a161e8867221cec4 2498 Gene3D G3DSA:2.160.20.110 1455 1712 3.4E-41 T 12-10-2018 R615_01855 4bb71c38785527d2a161e8867221cec4 2498 Gene3D G3DSA:2.160.20.110 527 775 1.4E-35 T 12-10-2018 R615_01855 4bb71c38785527d2a161e8867221cec4 2498 Gene3D G3DSA:2.160.20.110 90 334 2.8E-29 T 12-10-2018 R615_01855 4bb71c38785527d2a161e8867221cec4 2498 Gene3D G3DSA:2.160.20.110 2072 2309 1.9E-41 T 12-10-2018 R615_01855 4bb71c38785527d2a161e8867221cec4 2498 Gene3D G3DSA:2.160.20.110 970 1219 4.5E-37 T 12-10-2018 R615_03840 2733a476755f054566c62ab39bc82917 98 Pfam PF07695 7TM diverse intracellular signalling 38 95 1.5E-14 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 R615_06645 02665905ca3d7e083cc49e9662377864 194 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 3 173 1.6E-11 T 12-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase R615_11165 7dbf2a99a3f859eaa860f86b64905795 155 Pfam PF11220 Protein of unknown function (DUF3015) 18 153 3.1E-35 T 12-10-2018 IPR021383 Protein of unknown function DUF3015 R615_04655 fb7b5c9f90397913379d3547f3381ccd 96 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 19 93 1.4E-28 T 12-10-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 R615_04690 ae754329ddfeeda8be53c23fe0ed2c5f 71 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 11 60 2.0E-16 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA R615_08890 6ac749d699258805c15087c91443465b 218 Pfam PF04191 Phospholipid methyltransferase 119 193 1.5E-7 T 12-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 R615_08890 6ac749d699258805c15087c91443465b 218 Gene3D G3DSA:1.20.120.1630 6 207 2.4E-23 T 12-10-2018 R615_13435 b08d1b9150327a9a46fa581bba5158c3 84 Pfam PF04999 Cell division protein FtsL 7 81 1.4E-14 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 R615_05970 12fdfe0b79e722342506dc220dac2530 459 Pfam PF11067 Protein of unknown function (DUF2868) 144 442 2.9E-65 T 12-10-2018 IPR021296 Protein of unknown function DUF2868 R615_08550 53c39874eaf2e73f0ba9847cc9ce86e1 313 Pfam PF03547 Membrane transport protein 162 301 2.6E-9 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 R615_10590 ffd31dd1183d418925052d3502a747fa 66 Pfam PF13761 Domain of unknown function (DUF4166) 5 60 1.7E-12 T 12-10-2018 IPR025311 Domain of unknown function DUF4166 R615_12025 9851e96b52c5bd0e83742e4d94c937ac 340 Pfam PF10974 Protein of unknown function (DUF2804) 11 339 7.1E-85 T 12-10-2018 IPR021243 Protein of unknown function DUF2804 R615_04490 72740ed5b19ac57c7f24bed47f283963 579 Pfam PF01895 PhoU domain 508 563 2.0E-5 T 12-10-2018 IPR026022 PhoU domain R615_04490 72740ed5b19ac57c7f24bed47f283963 579 Pfam PF01895 PhoU domain 370 458 1.9E-6 T 12-10-2018 IPR026022 PhoU domain R615_04490 72740ed5b19ac57c7f24bed47f283963 579 Gene3D G3DSA:1.20.58.220 474 568 5.2E-8 T 12-10-2018 IPR038078 PhoU-like domain superfamily R615_04490 72740ed5b19ac57c7f24bed47f283963 579 Gene3D G3DSA:1.20.58.220 363 468 1.8E-6 T 12-10-2018 IPR038078 PhoU-like domain superfamily R615_04490 72740ed5b19ac57c7f24bed47f283963 579 SUPERFAMILY SSF109755 354 563 1.78E-28 T 12-10-2018 R615_04490 72740ed5b19ac57c7f24bed47f283963 579 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 9 337 1.1E-66 T 12-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 R615_04490 72740ed5b19ac57c7f24bed47f283963 579 Pfam PF02690 Na+/Pi-cotransporter 187 267 4.9E-12 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 R615_04490 72740ed5b19ac57c7f24bed47f283963 579 Pfam PF02690 Na+/Pi-cotransporter 17 156 2.5E-44 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 R615_10945 63d283653a2393d5cac614174e13c16f 377 Gene3D G3DSA:3.40.190.170 98 331 1.9E-7 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily R615_00470 0ea40d0fff0e400aebfe387e9d255381 200 Pfam PF13036 Peptidoglycan-synthase activator LpoB 46 189 7.3E-42 T 12-10-2018 IPR014094 Penicillin-binding protein activator LpoB R615_00470 0ea40d0fff0e400aebfe387e9d255381 200 Gene3D G3DSA:3.40.50.10610 42 192 1.7E-7 T 12-10-2018 R615_13320 82af75289374f323964790ad6bb11cd5 351 Gene3D G3DSA:3.40.50.300 123 329 4.6E-70 T 12-10-2018 R615_13320 82af75289374f323964790ad6bb11cd5 351 Pfam PF02562 PhoH-like protein 126 329 5.6E-92 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 R615_13320 82af75289374f323964790ad6bb11cd5 351 SUPERFAMILY SSF52540 125 304 3.27E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_03065 436edebbd676c8608eb105f120a2128c 66 Pfam PF10981 Protein of unknown function (DUF2788) 14 63 1.7E-18 T 12-10-2018 IPR021249 Protein of unknown function DUF2788 R615_08225 bad36d16bb0262d62c18d8869deb1d27 214 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 187 7.5E-36 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_11015 58fe57ab7b74356af88b24157c2e6989 69 Pfam PF14086 Domain of unknown function (DUF4266) 20 69 1.4E-21 T 12-10-2018 IPR025362 Domain of unknown function DUF4266 R615_01010 018b2ae496db686e713346249e601de9 361 Pfam PF11279 Protein of unknown function (DUF3080) 36 349 4.5E-88 T 12-10-2018 IPR021431 Protein of unknown function DUF3080 R615_11005 9041c340e191d37d0176a93a1a3d92d1 453 Pfam PF07394 Protein of unknown function (DUF1501) 34 393 4.3E-23 T 12-10-2018 IPR010869 Protein of unknown function DUF1501 R615_07115 e689a0229fd533927e45a6417d0d36a1 403 Gene3D G3DSA:3.90.550.10 14 328 2.9E-42 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_07115 e689a0229fd533927e45a6417d0d36a1 403 SUPERFAMILY SSF53448 38 402 1.24E-95 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases R615_14230 1e7bd1870c692c38964e2f02222bde7e 454 Pfam PF07044 Protein of unknown function (DUF1329) 84 449 3.3E-153 T 12-10-2018 IPR010752 Protein of unknown function DUF1329 R615_03075 bff21c0f874052c7fbb4a4f30352ec81 83 Pfam PF14357 Domain of unknown function (DUF4404) 6 83 4.8E-22 T 12-10-2018 IPR025516 Protein of unknown function DUF4404 R615_16840 c8f6fb36451324a245568641df83a20d 282 Pfam PF05742 Transport and Golgi organisation 2 28 267 1.6E-59 T 12-10-2018 IPR008551 Transport and Golgi organisation protein 2 R615_06070 6e34c2043b14b170dc6ba290bcb7de69 655 Pfam PF05960 Bacterial protein of unknown function (DUF885) 63 602 1.1E-90 T 12-10-2018 IPR010281 Protein of unknown function DUF885 R615_06905 2a53a6971aef95ffc0d5e98a99a6debd 196 Pfam PF03923 Uncharacterized lipoprotein 53 193 2.3E-17 T 12-10-2018 IPR005619 Uncharacterised protein family, YajG R615_12520 1d139911bd6727358b6a6eac7549126a 268 Pfam PF01578 Cytochrome C assembly protein 40 262 9.3E-23 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 R615_14975 2d1e3100bd66b525a2ceb3e0cd9b5770 564 SUPERFAMILY SSF51905 13 374 3.71E-24 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14975 2d1e3100bd66b525a2ceb3e0cd9b5770 564 Gene3D G3DSA:3.50.50.60 10 399 1.1E-70 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily R615_14975 2d1e3100bd66b525a2ceb3e0cd9b5770 564 Pfam PF04820 Tryptophan halogenase 114 333 5.2E-7 T 12-10-2018 IPR006905 Flavin-dependent halogenase R615_03475 0232dcdf93fe3fc21c6b9b674a75c50d 286 Pfam PF09851 Short C-terminal domain 258 283 4.5E-7 T 12-10-2018 IPR018649 SHOCT domain R615_09185 ea484e8f1e02d01ee8b8e59bce5b347e 82 Pfam PF11730 Protein of unknown function (DUF3297) 11 81 3.6E-38 T 12-10-2018 IPR021724 Protein of unknown function DUF3297 R615_11410 0e6588601e150a32c0bd31c0702cdc60 1047 SUPERFAMILY SSF48695 380 712 1.17E-18 T 12-10-2018 IPR036280 Multiheme cytochrome superfamily R615_06815 06a857eda7089ca92a1a839c565ce30a 81 Gene3D G3DSA:1.10.260.40 2 81 2.0E-6 T 12-10-2018 R615_08570 34dc904360ecffa551cb217f5c097d65 77 Pfam PF04400 (Na+)-NQR maturation NqrM 22 65 1.2E-15 T 12-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM R615_11320 b7eead1564b386567901a264ef5f0c03 251 Pfam PF01925 Sulfite exporter TauE/SafE 11 246 4.0E-42 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 R615_14760 298857bfc9b29989d645ca823e47e465 307 PIRSF PIRSF007580 10 288 2.2E-80 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_14760 298857bfc9b29989d645ca823e47e465 307 Pfam PF10118 Predicted metal-dependent hydrolase 26 272 2.2E-85 T 12-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 R615_17255 02603e4c037dc95c654348cfd26a2c7e 311 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 307 1.8E-72 T 12-10-2018 IPR007296 Domain of unknown function DUF403 R615_03345 eec80a0233e9cae37f8d2f3a13d039ce 78 Gene3D G3DSA:3.30.700.10 1 75 1.4E-5 T 12-10-2018 R615_03345 eec80a0233e9cae37f8d2f3a13d039ce 78 SUPERFAMILY SSF54523 1 74 1.73E-13 T 12-10-2018 R615_11245 1a1e7d8a6d6707fc062c5f631ece2148 897 SUPERFAMILY SSF48371 13 151 3.33E-6 T 12-10-2018 IPR016024 Armadillo-type fold R615_11245 1a1e7d8a6d6707fc062c5f631ece2148 897 Pfam PF03993 Domain of Unknown Function (DUF349) 602 667 7.3E-12 T 12-10-2018 IPR007139 Protein of unknown function DUF349 R615_11245 1a1e7d8a6d6707fc062c5f631ece2148 897 Pfam PF03993 Domain of Unknown Function (DUF349) 520 597 1.8E-12 T 12-10-2018 IPR007139 Protein of unknown function DUF349 R615_15545 c3b90b55e3a0abf233d2174e90798e8e 368 Pfam PF06516 Purine nucleoside permease (NUP) 43 362 5.1E-116 T 12-10-2018 IPR009486 Purine nucleoside permease GO:0055085 R615_15545 c3b90b55e3a0abf233d2174e90798e8e 368 PIRSF PIRSF013171 4 366 7.7E-96 T 12-10-2018 IPR009486 Purine nucleoside permease GO:0055085 R615_12485 9a4804ef818fc4dfcd37f1bc0bab0200 167 Pfam PF11286 Protein of unknown function (DUF3087) 1 164 2.9E-54 T 12-10-2018 IPR021438 Protein of unknown function DUF3087 R615_03980 44272e2236528a21d59ca0f136ce3eee 339 Pfam PF00487 Fatty acid desaturase 68 319 8.4E-30 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 R615_00060 6abc9579c8bd7e99add96461ed71f430 61 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 58 3.1E-14 T 12-10-2018 IPR027379 Cardiolipin synthase N-terminal R615_13725 d122b977e277b476d0cc154885a85bbf 374 Pfam PF12698 ABC-2 family transporter protein 24 363 1.2E-35 T 12-10-2018 R615_05825 99707fad463aea56ddb612354f43829b 77 Pfam PF06146 Phosphate-starvation-inducible E 8 69 6.3E-13 T 12-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like R615_05825 99707fad463aea56ddb612354f43829b 77 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 76 2.3E-35 T 12-10-2018 IPR013468 Conserved hypothetical protein CHP02647 R615_14365 2fda424988d812526dfd9f5a34470c9c 260 Pfam PF01203 Type II secretion system (T2SS), protein N 45 210 1.3E-13 T 12-10-2018 IPR022792 Type II secretion system, protein N R615_15845 93246e594f9ffdfe34865efd5e08ddc0 99 Pfam PF01554 MatE 48 95 3.5E-6 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 R615_02755 67f5f81dfc33e37d54aa1266e943caa3 755 SUPERFAMILY SSF82171 292 607 5.89E-8 T 12-10-2018 R615_05875 b9de9ef1d2660b49968426f47e280692 132 Gene3D G3DSA:3.10.129.10 1 110 1.2E-16 T 12-10-2018 R615_05875 b9de9ef1d2660b49968426f47e280692 132 SUPERFAMILY SSF54637 2 120 8.95E-12 T 12-10-2018 IPR029069 HotDog domain superfamily R615_08415 286b46dde7bdc98242efc403ce7afa99 546 SUPERFAMILY SSF47226 17 134 1.51E-7 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 R615_03910 1f06cc150b9f67ea3f1def284bdb31e7 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 12 134 9.2E-31 T 12-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 R615_03910 1f06cc150b9f67ea3f1def284bdb31e7 143 Gene3D G3DSA:3.30.530.20 2 143 1.1E-36 T 12-10-2018 IPR023393 START-like domain superfamily R615_03910 1f06cc150b9f67ea3f1def284bdb31e7 143 SUPERFAMILY SSF55961 1 143 1.38E-35 T 12-10-2018 R615_15805 943a4d75eec93c0fe68e951e0c9a2068 224 Pfam PF14219 Domain of unknown function (DUF4328) 64 206 6.3E-8 T 12-10-2018 IPR025565 Domain of unknown function DUF4328 R615_03615 53085ccc676c8bbc44f6f56d5d19ce74 288 Pfam PF07103 Protein of unknown function (DUF1365) 8 269 1.6E-63 T 12-10-2018 IPR010775 Protein of unknown function DUF1365 R615_09705 6ad5bbe9009cccb84b2937116def1882 206 Pfam PF04315 Elongation factor P hydroxylase 35 196 1.7E-69 T 12-10-2018 IPR007411 Elongation factor P hydroxylase R615_03790 90596e0ba443afc36541c36527bc67a3 94 Gene3D G3DSA:1.10.10.10 2 87 6.1E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily R615_11790 1ed306fa0a4db4726e99bd4a476a6694 289 Pfam PF08907 Domain of unknown function (DUF1853) 21 279 3.7E-51 T 12-10-2018 IPR015003 Protein of unknown function DUF1853 R615_06355 8b92d5142b7117ee163c90844b70c5e0 198 Pfam PF02397 Bacterial sugar transferase 3 177 2.4E-66 T 12-10-2018 IPR003362 Bacterial sugar transferase R615_09525 8a904c2e6afb66da16be391538cbe1cd 219 Pfam PF01618 MotA/TolQ/ExbB proton channel family 70 194 2.1E-27 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel R615_12035 6fdf7e0f9cdec6c66bfc6bb7dbf15da9 163 Gene3D G3DSA:1.10.8.640 22 106 4.6E-34 T 12-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily R615_12035 6fdf7e0f9cdec6c66bfc6bb7dbf15da9 163 Pfam PF03918 Cytochrome C biogenesis protein 9 147 2.1E-50 T 12-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family R615_14970 51d775eac49cca9f989ba9d378ed9b6a 342 Pfam PF05141 Pyoverdine/dityrosine biosynthesis protein 67 316 4.0E-77 T 12-10-2018 IPR007817 Pyoverdine biosynthesis R615_13770 94234dfd8eaf1d36bf1ac37db1780beb 73 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 5 64 5.8E-25 T 12-10-2018 IPR018691 Protein of unknown function DUF2188 R615_16645 b9f554033366823585b394698286e9ff 903 Pfam PF11739 Dicarboxylate transport 695 897 3.0E-50 T 12-10-2018 IPR021730 Dicarboxylate transport R615_11300 c720436e02d5a8d493d5cecc45a5f997 700 SUPERFAMILY SSF52540 389 559 1.54E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase R615_08895 cc2d1feacfafce8e22309db7720a16d3 99 Pfam PF11666 Protein of unknown function (DUF2933) 19 68 2.2E-23 T 12-10-2018 IPR021682 Protein of unknown function DUF2933 R615_00295 80086d06f7255ca9d335508b043068b7 263 Pfam PF04575 Protein of unknown function (DUF560) 80 260 2.3E-11 T 12-10-2018 IPR007655 Protein of unknown function DUF560