locus-tag class description TH3_00005 PF08299 Bacterial dnaA protein helix-turn-helix TH3_00005 PF00308 Bacterial dnaA protein TH3_00005 PF11638 DnaA N-terminal domain TH3_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain TH3_00010 PF02767 DNA polymerase III beta subunit, central domain TH3_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain TH3_00015 PF02463 RecF/RecN/SMC N terminal domain TH3_00020 PF00204 DNA gyrase B TH3_00020 PF01751 Toprim domain TH3_00020 PF00986 DNA gyrase B subunit, carboxyl terminus TH3_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_00070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TH3_00080 PF01370 NAD dependent epimerase/dehydratase family TH3_00085 PF16363 GDP-mannose 4,6 dehydratase TH3_00115 PF00912 Transglycosylase TH3_00120 PF00912 Transglycosylase TH3_00120 PF00905 Penicillin binding protein transpeptidase domain TH3_00125 PF07687 Peptidase dimerisation domain TH3_00125 PF01546 Peptidase family M20/M25/M40 TH3_00130 PF01970 Tripartite tricarboxylate transporter TctA family TH3_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_00145 PF03466 LysR substrate binding domain TH3_00150 PF01810 LysE type translocator TH3_00160 PF00764 Arginosuccinate synthase TH3_00165 PF01416 tRNA pseudouridine synthase TH3_00175 PF04172 LrgB-like family TH3_00185 PF03960 ArsC family TH3_00195 PF02631 RecX family TH3_00200 PF01061 ABC-2 type transporter TH3_00205 PF00202 Aminotransferase class-III TH3_00210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TH3_00210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TH3_00215 PF01430 Hsp33 protein TH3_00235 PF04542 Sigma-70 region 2 TH3_00235 PF08281 Sigma-70, region 4 TH3_00245 PF00582 Universal stress protein family TH3_00250 PF01740 STAS domain TH3_00250 PF00916 Sulfate permease family TH3_00255 PF00501 AMP-binding enzyme TH3_00255 PF16177 Acetyl-coenzyme A synthetase N-terminus TH3_00255 PF13193 AMP-binding enzyme C-terminal domain TH3_00260 PF02646 RmuC family TH3_00265 PF01327 Polypeptide deformylase TH3_00275 PF02911 Formyl transferase, C-terminal domain TH3_00275 PF00551 Formyl transferase TH3_00285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_00285 PF03466 LysR substrate binding domain TH3_00310 PF16868 NMT1-like family TH3_00315 PF00158 Sigma-54 interaction domain TH3_00315 PF00072 Response regulator receiver domain TH3_00315 PF02954 Bacterial regulatory protein, Fis family TH3_00320 PF00512 His Kinase A (phospho-acceptor) domain TH3_00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_00320 PF02743 Cache domain TH3_00325 PF00486 Transcriptional regulatory protein, C terminal TH3_00325 PF00072 Response regulator receiver domain TH3_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_00330 PF13756 Stimulus-sensing domain TH3_00330 PF00512 His Kinase A (phospho-acceptor) domain TH3_00330 PF13755 Sensor N-terminal transmembrane domain TH3_00330 PF00672 HAMP domain TH3_00340 PF03668 P-loop ATPase protein family TH3_00345 PF03610 PTS system fructose IIA component TH3_00345 PF03830 PTS system sorbose subfamily IIB component TH3_00350 PF00381 PTS HPr component phosphorylation site TH3_00355 PF00391 PEP-utilising enzyme, mobile domain TH3_00355 PF02896 PEP-utilising enzyme, TIM barrel domain TH3_00355 PF05524 PEP-utilising enzyme, N-terminal TH3_00360 PF05221 S-adenosyl-L-homocysteine hydrolase TH3_00360 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TH3_00385 PF02386 Cation transport protein TH3_00395 PF01966 HD domain TH3_00400 PF00512 His Kinase A (phospho-acceptor) domain TH3_00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_00405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_00405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TH3_00425 PF00072 Response regulator receiver domain TH3_00425 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_00430 PF00027 Cyclic nucleotide-binding domain TH3_00430 PF13545 Crp-like helix-turn-helix domain TH3_00435 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_00445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_00450 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TH3_00450 PF08501 Shikimate dehydrogenase substrate binding domain TH3_00450 PF01488 Shikimate / quinate 5-dehydrogenase TH3_00455 PF07729 FCD domain TH3_00455 PF00392 Bacterial regulatory proteins, gntR family TH3_00460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TH3_00465 PF01220 Dehydroquinase class II TH3_00475 PF13662 Toprim domain TH3_00475 PF02132 RecR protein TH3_00480 PF02575 YbaB/EbfC DNA-binding family TH3_00485 PF12169 DNA polymerase III subunits gamma and tau domain III TH3_00485 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding TH3_00485 PF12170 DNA polymerase III tau subunit V interacting with alpha TH3_00495 PF09297 NADH pyrophosphatase zinc ribbon domain TH3_00495 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TH3_00495 PF00293 NUDIX domain TH3_00510 PF08818 Domain of unknown function (DU1801) TH3_00515 PF03466 LysR substrate binding domain TH3_00515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_00520 PF13417 Glutathione S-transferase, N-terminal domain TH3_00525 PF13417 Glutathione S-transferase, N-terminal domain TH3_00525 PF00043 Glutathione S-transferase, C-terminal domain TH3_00535 PF18331 PKHD-type hydroxylase C-terminal domain TH3_00535 PF13640 2OG-Fe(II) oxygenase superfamily TH3_00540 PF01546 Peptidase family M20/M25/M40 TH3_00540 PF07687 Peptidase dimerisation domain TH3_00545 PF00132 Bacterial transferase hexapeptide (six repeats) TH3_00545 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TH3_00545 PF14602 Hexapeptide repeat of succinyl-transferase TH3_00555 PF00563 EAL domain TH3_00555 PF05231 MASE1 TH3_00565 PF01293 Phosphoenolpyruvate carboxykinase TH3_00580 PF05532 CsbD-like TH3_00590 PF04715 Anthranilate synthase component I, N terminal region TH3_00590 PF00117 Glutamine amidotransferase class-I TH3_00590 PF00425 chorismate binding enzyme TH3_00595 PF00520 Ion transport protein TH3_00595 PF00027 Cyclic nucleotide-binding domain TH3_00600 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TH3_00605 PF01209 ubiE/COQ5 methyltransferase family TH3_00610 PF03109 ABC1 family TH3_00620 PF16591 Helical bimodular sensor domain TH3_00620 PF00672 HAMP domain TH3_00620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_00630 PF00156 Phosphoribosyl transferase domain TH3_00635 PF07995 Glucose / Sorbosone dehydrogenase TH3_00645 PF02386 Cation transport protein TH3_00655 PF01118 Semialdehyde dehydrogenase, NAD binding domain TH3_00655 PF02774 Semialdehyde dehydrogenase, dimerisation domain TH3_00660 PF00072 Response regulator receiver domain TH3_00660 PF00990 Diguanylate cyclase, GGDEF domain TH3_00665 PF00551 Formyl transferase TH3_00670 PF02386 Cation transport protein TH3_00675 PF00440 Bacterial regulatory proteins, tetR family TH3_00685 PF03352 Methyladenine glycosylase TH3_00690 PF13426 PAS domain TH3_00690 PF00672 HAMP domain TH3_00690 PF00512 His Kinase A (phospho-acceptor) domain TH3_00690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_00695 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_00695 PF00403 Heavy-metal-associated domain TH3_00695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TH3_00700 PF09335 SNARE associated Golgi protein TH3_00705 PF01053 Cys/Met metabolism PLP-dependent enzyme TH3_00710 PF04379 ApaG domain TH3_00715 PF01227 GTP cyclohydrolase I TH3_00725 PF01451 Low molecular weight phosphotyrosine protein phosphatase TH3_00740 PF01554 MatE TH3_00745 PF03009 Glycerophosphoryl diester phosphodiesterase family TH3_00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_00765 PF00512 His Kinase A (phospho-acceptor) domain TH3_00765 PF02743 Cache domain TH3_00770 PF00158 Sigma-54 interaction domain TH3_00770 PF02954 Bacterial regulatory protein, Fis family TH3_00770 PF00072 Response regulator receiver domain TH3_00780 PF00528 Binding-protein-dependent transport system inner membrane component TH3_00785 PF00005 ABC transporter TH3_00785 PF08402 TOBE domain TH3_00790 PF00300 Histidine phosphatase superfamily (branch 1) TH3_00815 PF00271 Helicase conserved C-terminal domain TH3_00815 PF00270 DEAD/DEAH box helicase TH3_00815 PF09369 Domain of unknown function (DUF1998) TH3_00820 PF18337 RapA N-terminal Tudor like domain TH3_00820 PF00176 SNF2 family N-terminal domain TH3_00820 PF00271 Helicase conserved C-terminal domain TH3_00820 PF12137 RNA polymerase recycling family C-terminal TH3_00820 PF18339 RapA N-terminal Tudor like domain 1 TH3_00850 PF18821 Large polyvalent protein-associated domain 7 TH3_00850 PF03432 Relaxase/Mobilisation nuclease domain TH3_00870 PF13362 Toprim domain TH3_00870 PF08401 Domain of unknown function (DUF1738) TH3_00870 PF18818 Metallopeptidase superfamily domain TH3_00880 PF02534 Type IV secretory system Conjugative DNA transfer TH3_00890 PF00437 Type II/IV secretion system protein TH3_00900 PF03743 Bacterial conjugation TrbI-like protein TH3_00985 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family TH3_01000 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system TH3_01005 PF00141 Peroxidase TH3_01010 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TH3_01010 PF00056 lactate/malate dehydrogenase, NAD binding domain TH3_01015 PF07859 alpha/beta hydrolase fold TH3_01025 PF02028 BCCT, betaine/carnitine/choline family transporter TH3_01035 PF02615 Malate/L-lactate dehydrogenase TH3_01040 PF00005 ABC transporter TH3_01050 PF00528 Binding-protein-dependent transport system inner membrane component TH3_01060 PF06299 Protein of unknown function (DUF1045) TH3_01065 PF00625 Guanylate kinase TH3_01065 PF02885 Glycosyl transferase family, helical bundle domain TH3_01065 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TH3_01065 PF00591 Glycosyl transferase family, a/b domain TH3_01070 PF07969 Amidohydrolase family TH3_01075 PF00005 ABC transporter TH3_01080 PF00005 ABC transporter TH3_01085 PF06007 Phosphonate metabolism protein PhnJ TH3_01090 PF05861 Bacterial phosphonate metabolism protein (PhnI) TH3_01100 PF06754 Phosphonate metabolism protein PhnG TH3_01105 PF00155 Aminotransferase class I and II TH3_01105 PF00392 Bacterial regulatory proteins, gntR family TH3_01110 PF03458 UPF0126 domain TH3_01115 PF00563 EAL domain TH3_01115 PF00990 Diguanylate cyclase, GGDEF domain TH3_01115 PF13426 PAS domain TH3_01120 PF00557 Metallopeptidase family M24 TH3_01125 PF01274 Malate synthase TH3_01140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_01160 PF00990 Diguanylate cyclase, GGDEF domain TH3_01185 PF00849 RNA pseudouridylate synthase TH3_01190 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TH3_01195 PF12973 ChrR Cupin-like domain TH3_01200 PF04545 Sigma-70, region 4 TH3_01200 PF04542 Sigma-70 region 2 TH3_01220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TH3_01245 PF00849 RNA pseudouridylate synthase TH3_01265 PF02142 MGS-like domain TH3_01270 PF05016 ParE toxin of type II toxin-antitoxin system, parDE TH3_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TH3_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_01285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TH3_01285 PF00364 Biotin-requiring enzyme TH3_01285 PF02817 e3 binding domain TH3_01290 PF16078 2-oxoglutarate dehydrogenase N-terminus TH3_01290 PF00676 Dehydrogenase E1 component TH3_01290 PF16870 2-oxoglutarate dehydrogenase C-terminal TH3_01290 PF02779 Transketolase, pyrimidine binding domain TH3_01295 PF00549 CoA-ligase TH3_01295 PF02629 CoA binding domain TH3_01300 PF08442 ATP-grasp domain TH3_01300 PF00549 CoA-ligase TH3_01305 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TH3_01305 PF00056 lactate/malate dehydrogenase, NAD binding domain TH3_01315 PF03969 AFG1-like ATPase TH3_01320 PF01544 CorA-like Mg2+ transporter protein TH3_01325 PF00924 Mechanosensitive ion channel TH3_01325 PF12795 Mechanosensitive ion channel porin domain TH3_01325 PF12794 Mechanosensitive ion channel inner membrane domain 1 TH3_01330 PF00293 NUDIX domain TH3_01335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TH3_01335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TH3_01340 PF02445 Quinolinate synthetase A protein TH3_01360 PF00120 Glutamine synthetase, catalytic domain TH3_01370 PF00043 Glutathione S-transferase, C-terminal domain TH3_01370 PF13417 Glutathione S-transferase, N-terminal domain TH3_01380 PF02899 Phage integrase, N-terminal SAM-like domain TH3_01380 PF00589 Phage integrase family TH3_01390 PF00923 Transaldolase/Fructose-6-phosphate aldolase TH3_01395 PF00270 DEAD/DEAH box helicase TH3_01395 PF17764 3′ DNA-binding domain (3′BD) TH3_01395 PF18074 Primosomal protein N C-terminal domain TH3_01395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TH3_01415 PF00213 ATP synthase delta (OSCP) subunit TH3_01420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TH3_01420 PF00306 ATP synthase alpha/beta chain, C terminal domain TH3_01420 PF02874 ATP synthase alpha/beta family, beta-barrel domain TH3_01425 PF00231 ATP synthase TH3_01430 PF02874 ATP synthase alpha/beta family, beta-barrel domain TH3_01430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TH3_01435 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TH3_01440 PF00072 Response regulator receiver domain TH3_01450 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TH3_01450 PF01578 Cytochrome C assembly protein TH3_01455 PF16916 Dimerisation domain of Zinc Transporter TH3_01455 PF01545 Cation efflux family TH3_01460 PF13667 ThiC-associated domain TH3_01460 PF01964 Radical SAM ThiC family TH3_01465 PF02562 PhoH-like protein TH3_01485 PF01022 Bacterial regulatory protein, arsR family TH3_01490 PF00009 Elongation factor Tu GTP binding domain TH3_01490 PF03144 Elongation factor Tu domain 2 TH3_01490 PF16658 Class II release factor RF3, C-terminal domain TH3_01515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TH3_01520 PF00873 AcrB/AcrD/AcrF family TH3_01525 PF02321 Outer membrane efflux protein TH3_01535 PF00356 Bacterial regulatory proteins, lacI family TH3_01540 PF03352 Methyladenine glycosylase TH3_01540 PF00117 Glutamine amidotransferase class-I TH3_01540 PF00958 GMP synthase C terminal domain TH3_01540 PF13673 Acetyltransferase (GNAT) domain TH3_01540 PF13302 Acetyltransferase (GNAT) domain TH3_01545 PF02325 YGGT family TH3_01550 PF02594 Uncharacterised ACR, YggU family COG1872 TH3_01555 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TH3_01555 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TH3_01565 PF02080 TrkA-C domain TH3_01565 PF03600 Citrate transporter TH3_01570 PF06224 Winged helix DNA-binding domain TH3_01580 PF00005 ABC transporter TH3_01580 PF08402 TOBE domain TH3_01585 PF00528 Binding-protein-dependent transport system inner membrane component TH3_01590 PF00528 Binding-protein-dependent transport system inner membrane component TH3_01615 PF00593 TonB dependent receptor TH3_01615 PF07715 TonB-dependent Receptor Plug Domain TH3_01635 PF01118 Semialdehyde dehydrogenase, NAD binding domain TH3_01635 PF02774 Semialdehyde dehydrogenase, dimerisation domain TH3_01655 PF04542 Sigma-70 region 2 TH3_01655 PF08281 Sigma-70, region 4 TH3_01655 PF12680 SnoaL-like domain TH3_01665 PF00180 Isocitrate/isopropylmalate dehydrogenase TH3_01670 PF00694 Aconitase C-terminal domain TH3_01680 PF00330 Aconitase family (aconitate hydratase) TH3_01685 PF01245 Ribosomal protein L19 TH3_01690 PF01746 tRNA (Guanine-1)-methyltransferase TH3_01695 PF01782 RimM N-terminal domain TH3_01695 PF05239 PRC-barrel domain TH3_01700 PF00886 Ribosomal protein S16 TH3_01705 PF00448 SRP54-type protein, GTPase domain TH3_01705 PF02978 Signal peptide binding domain TH3_01705 PF02881 SRP54-type protein, helical bundle domain TH3_01710 PF02569 Pantoate-beta-alanine ligase TH3_01715 PF02548 Ketopantoate hydroxymethyltransferase TH3_01720 PF00027 Cyclic nucleotide-binding domain TH3_01720 PF00325 Bacterial regulatory proteins, crp family TH3_01725 PF03597 Cytochrome oxidase maturation protein cbb3-type TH3_01730 PF00403 Heavy-metal-associated domain TH3_01740 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TH3_01740 PF13746 4Fe-4S dicluster domain TH3_01740 PF12801 4Fe-4S binding domain TH3_01745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TH3_01745 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TH3_01760 PF00115 Cytochrome C and Quinol oxidase polypeptide I TH3_01770 PF01678 Diaminopimelate epimerase TH3_01775 PF00162 Phosphoglycerate kinase TH3_01800 PF00561 alpha/beta hydrolase fold TH3_01805 PF13649 Methyltransferase domain TH3_01815 PF00293 NUDIX domain TH3_01825 PF03572 Peptidase family S41 TH3_01825 PF13180 PDZ domain TH3_01830 PF01551 Peptidase family M23 TH3_01835 PF01676 Metalloenzyme superfamily TH3_01835 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TH3_01840 PF03315 Serine dehydratase beta chain TH3_01840 PF03313 Serine dehydratase alpha chain TH3_01845 PF01872 RibD C-terminal domain TH3_01855 PF02590 Predicted SPOUT methyltransferase TH3_01865 PF01467 Cytidylyltransferase-like TH3_01870 PF00171 Aldehyde dehydrogenase family TH3_01875 PF00664 ABC transporter transmembrane region TH3_01875 PF00005 ABC transporter TH3_01890 PF00990 Diguanylate cyclase, GGDEF domain TH3_01895 PF00990 Diguanylate cyclase, GGDEF domain TH3_01895 PF17158 Membrane-associated sensor, integral membrane domain TH3_01905 PF00890 FAD binding domain TH3_01905 PF02910 Fumarate reductase flavoprotein C-term TH3_01915 PF18125 RlmM ferredoxin-like domain TH3_01915 PF01728 FtsJ-like methyltransferase TH3_01925 PF01613 Flavin reductase like domain TH3_01930 PF07969 Amidohydrolase family TH3_01940 PF02653 Branched-chain amino acid transport system / permease component TH3_01955 PF18755 Restriction Enzyme Adenine Methylase Associated TH3_01955 PF01555 DNA methylase TH3_01965 PF00730 HhH-GPD superfamily base excision DNA repair protein TH3_01965 PF14815 NUDIX domain TH3_01975 PF06965 Na+/H+ antiporter 1 TH3_01975 PF13462 Thioredoxin TH3_01980 PF02463 RecF/RecN/SMC N terminal domain TH3_01990 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter TH3_01995 PF00119 ATP synthase A chain TH3_02000 PF00137 ATP synthase subunit C TH3_02005 PF00430 ATP synthase B/B' CF(0) TH3_02015 PF13409 Glutathione S-transferase, N-terminal domain TH3_02020 PF03466 LysR substrate binding domain TH3_02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_02040 PF17863 AAA lid domain TH3_02040 PF07726 ATPase family associated with various cellular activities (AAA) TH3_02050 PF00293 NUDIX domain TH3_02060 PF12627 Probable RNA and SrmB- binding site of polymerase A TH3_02060 PF01743 Poly A polymerase head domain TH3_02060 PF13735 tRNA nucleotidyltransferase domain 2 putative TH3_02075 PF13426 PAS domain TH3_02075 PF00563 EAL domain TH3_02075 PF00990 Diguanylate cyclase, GGDEF domain TH3_02080 PF00589 Phage integrase family TH3_02080 PF02899 Phage integrase, N-terminal SAM-like domain TH3_02095 PF01202 Shikimate kinase TH3_02100 PF01761 3-dehydroquinate synthase TH3_02105 PF01595 Cyclin M transmembrane N-terminal domain TH3_02105 PF03471 Transporter associated domain TH3_02105 PF00571 CBS domain TH3_02110 PF00571 CBS domain TH3_02125 PF00034 Cytochrome c TH3_02130 PF07995 Glucose / Sorbosone dehydrogenase TH3_02135 PF01722 BolA-like protein TH3_02140 PF00226 DnaJ domain TH3_02145 PF12556 Cobaltochelatase CobS subunit N terminal TH3_02145 PF07728 AAA domain (dynein-related subfamily) TH3_02145 PF08406 CbbQ/NirQ/NorQ C-terminal TH3_02150 PF11775 Cobalamin biosynthesis protein CobT VWA domain TH3_02150 PF06213 Cobalamin biosynthesis protein CobT TH3_02155 PF00749 tRNA synthetases class I (E and Q), catalytic domain TH3_02160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_02160 PF03466 LysR substrate binding domain TH3_02170 PF00563 EAL domain TH3_02170 PF03707 Bacterial signalling protein N terminal repeat TH3_02170 PF00990 Diguanylate cyclase, GGDEF domain TH3_02180 PF00830 Ribosomal L28 family TH3_02195 PF07715 TonB-dependent Receptor Plug Domain TH3_02195 PF00593 TonB dependent receptor TH3_02205 PF02600 Disulfide bond formation protein DsbB TH3_02210 PF09335 SNARE associated Golgi protein TH3_02220 PF00465 Iron-containing alcohol dehydrogenase TH3_02225 PF00171 Aldehyde dehydrogenase family TH3_02230 PF00465 Iron-containing alcohol dehydrogenase TH3_02235 PF00005 ABC transporter TH3_02240 PF00005 ABC transporter TH3_02250 PF02653 Branched-chain amino acid transport system / permease component TH3_02255 PF13458 Periplasmic binding protein TH3_02265 PF00072 Response regulator receiver domain TH3_02265 PF00158 Sigma-54 interaction domain TH3_02265 PF02954 Bacterial regulatory protein, Fis family TH3_02270 PF00512 His Kinase A (phospho-acceptor) domain TH3_02270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_02275 PF00107 Zinc-binding dehydrogenase TH3_02275 PF08240 Alcohol dehydrogenase GroES-like domain TH3_02280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_02290 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_02295 PF00392 Bacterial regulatory proteins, gntR family TH3_02295 PF07729 FCD domain TH3_02300 PF03786 D-mannonate dehydratase (UxuA) TH3_02305 PF01232 Mannitol dehydrogenase Rossmann domain TH3_02305 PF08125 Mannitol dehydrogenase C-terminal domain TH3_02320 PF00593 TonB dependent receptor TH3_02320 PF07715 TonB-dependent Receptor Plug Domain TH3_02325 PF07690 Major Facilitator Superfamily TH3_02335 PF13382 Adenine deaminase C-terminal domain TH3_02335 PF01979 Amidohydrolase family TH3_02340 PF01156 Inosine-uridine preferring nucleoside hydrolase TH3_02345 PF08402 TOBE domain TH3_02345 PF00005 ABC transporter TH3_02360 PF13416 Bacterial extracellular solute-binding protein TH3_02365 PF00356 Bacterial regulatory proteins, lacI family TH3_02370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_02370 PF00672 HAMP domain TH3_02370 PF00512 His Kinase A (phospho-acceptor) domain TH3_02375 PF00072 Response regulator receiver domain TH3_02375 PF00486 Transcriptional regulatory protein, C terminal TH3_02380 PF12804 MobA-like NTP transferase domain TH3_02390 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TH3_02395 PF01799 [2Fe-2S] binding domain TH3_02395 PF00111 2Fe-2S iron-sulfur cluster binding domain TH3_02400 PF01037 Lrp/AsnC ligand binding domain TH3_02405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TH3_02415 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_02425 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_02440 PF04209 homogentisate 1,2-dioxygenase TH3_02450 PF02798 Glutathione S-transferase, N-terminal domain TH3_02450 PF14497 Glutathione S-transferase, C-terminal domain TH3_02465 PF16653 Saccharopine dehydrogenase C-terminal domain TH3_02465 PF03435 Saccharopine dehydrogenase NADP binding domain TH3_02470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TH3_02480 PF00440 Bacterial regulatory proteins, tetR family TH3_02490 PF00356 Bacterial regulatory proteins, lacI family TH3_02495 PF00005 ABC transporter TH3_02500 PF02653 Branched-chain amino acid transport system / permease component TH3_02505 PF13407 Periplasmic binding protein domain TH3_02515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TH3_02515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TH3_02525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_02525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TH3_02530 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_02540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_02545 PF01425 Amidase TH3_02580 PF01037 Lrp/AsnC ligand binding domain TH3_02585 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family TH3_02590 PF01321 Creatinase/Prolidase N-terminal domain TH3_02590 PF00557 Metallopeptidase family M24 TH3_02595 PF02423 Ornithine cyclodeaminase/mu-crystallin family TH3_02600 PF00291 Pyridoxal-phosphate dependent enzyme TH3_02605 PF17645 Arylmalonate decarboxylase TH3_02610 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_02615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TH3_02620 PF00155 Aminotransferase class I and II TH3_02620 PF00392 Bacterial regulatory proteins, gntR family TH3_02625 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_02630 PF00202 Aminotransferase class-III TH3_02635 PF00171 Aldehyde dehydrogenase family TH3_02645 PF00005 ABC transporter TH3_02645 PF00664 ABC transporter transmembrane region TH3_02645 PF03412 Peptidase C39 family TH3_02650 PF12706 Beta-lactamase superfamily domain TH3_02650 PF00753 Metallo-beta-lactamase superfamily TH3_02660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TH3_02670 PF01638 HxlR-like helix-turn-helix TH3_02675 PF00107 Zinc-binding dehydrogenase TH3_02675 PF08240 Alcohol dehydrogenase GroES-like domain TH3_02680 PF03328 HpcH/HpaI aldolase/citrate lyase family TH3_02685 PF00990 Diguanylate cyclase, GGDEF domain TH3_02685 PF00072 Response regulator receiver domain TH3_02700 PF02469 Fasciclin domain TH3_02725 PF00990 Diguanylate cyclase, GGDEF domain TH3_02730 PF03099 Biotin/lipoate A/B protein ligase family TH3_02735 PF00390 Malic enzyme, N-terminal domain TH3_02735 PF03949 Malic enzyme, NAD binding domain TH3_02735 PF01515 Phosphate acetyl/butaryl transferase TH3_02740 PF00571 CBS domain TH3_02740 PF03448 MgtE intracellular N domain TH3_02740 PF01769 Divalent cation transporter TH3_02745 PF00990 Diguanylate cyclase, GGDEF domain TH3_02745 PF00563 EAL domain TH3_02745 PF03707 Bacterial signalling protein N terminal repeat TH3_02750 PF05958 tRNA (Uracil-5-)-methyltransferase TH3_02765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TH3_02765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_02770 PF00689 Cation transporting ATPase, C-terminus TH3_02770 PF00690 Cation transporter/ATPase, N-terminus TH3_02775 PF01557 Fumarylacetoacetate (FAA) hydrolase family TH3_02805 PF01966 HD domain TH3_02815 PF00183 Hsp90 protein TH3_02830 PF00376 MerR family regulatory protein TH3_02830 PF09278 MerR, DNA binding TH3_02840 PF01479 S4 domain TH3_02845 PF00005 ABC transporter TH3_02845 PF03412 Peptidase C39 family TH3_02845 PF00664 ABC transporter transmembrane region TH3_02850 PF03412 Peptidase C39 family TH3_02850 PF00005 ABC transporter TH3_02850 PF00664 ABC transporter transmembrane region TH3_02855 PF13533 Biotin-lipoyl like TH3_02865 PF00468 Ribosomal protein L34 TH3_02870 PF00825 Ribonuclease P TH3_02875 PF01809 Putative membrane protein insertion efficiency factor TH3_02880 PF02096 60Kd inner membrane protein TH3_02880 PF14849 YidC periplasmic domain TH3_02885 PF01926 50S ribosome-binding GTPase TH3_02890 PF00696 Amino acid kinase family TH3_02895 PF00990 Diguanylate cyclase, GGDEF domain TH3_02895 PF08448 PAS fold TH3_02900 PF04055 Radical SAM superfamily TH3_02900 PF00919 Uncharacterized protein family UPF0004 TH3_02905 PF00448 SRP54-type protein, GTPase domain TH3_02905 PF02881 SRP54-type protein, helical bundle domain TH3_02910 PF00781 Diacylglycerol kinase catalytic domain TH3_02915 PF00210 Ferritin-like domain TH3_02935 PF08281 Sigma-70, region 4 TH3_02935 PF04542 Sigma-70 region 2 TH3_02945 PF01048 Phosphorylase superfamily TH3_02945 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus TH3_02985 PF01479 S4 domain TH3_02985 PF00849 RNA pseudouridylate synthase TH3_02990 PF07722 Peptidase C26 TH3_02995 PF14437 MafB19-like deaminase TH3_03000 PF04349 Periplasmic glucan biosynthesis protein, MdoG TH3_03005 PF02743 Cache domain TH3_03005 PF00672 HAMP domain TH3_03005 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_03015 PF00106 short chain dehydrogenase TH3_03020 PF06719 AraC-type transcriptional regulator N-terminus TH3_03020 PF12833 Helix-turn-helix domain TH3_03030 PF01032 FecCD transport family TH3_03035 PF00005 ABC transporter TH3_03040 PF02843 Phosphoribosylglycinamide synthetase, C domain TH3_03040 PF02844 Phosphoribosylglycinamide synthetase, N domain TH3_03040 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TH3_03045 PF02601 Exonuclease VII, large subunit TH3_03045 PF13742 OB-fold nucleic acid binding domain TH3_03070 PF03279 Bacterial lipid A biosynthesis acyltransferase TH3_03075 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TH3_03080 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TH3_03090 PF00664 ABC transporter transmembrane region TH3_03090 PF00005 ABC transporter TH3_03100 PF13579 Glycosyl transferase 4-like domain TH3_03100 PF00534 Glycosyl transferases group 1 TH3_03110 PF00781 Diacylglycerol kinase catalytic domain TH3_03115 PF01523 Putative modulator of DNA gyrase TH3_03135 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TH3_03160 PF01040 UbiA prenyltransferase family TH3_03165 PF04452 RNA methyltransferase TH3_03170 PF04107 Glutamate-cysteine ligase family 2(GCS2) TH3_03180 PF01266 FAD dependent oxidoreductase TH3_03180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TH3_03185 PF00528 Binding-protein-dependent transport system inner membrane component TH3_03190 PF00528 Binding-protein-dependent transport system inner membrane component TH3_03195 PF00005 ABC transporter TH3_03205 PF08220 DeoR-like helix-turn-helix domain TH3_03205 PF00455 DeoR C terminal sensor domain TH3_03210 PF10415 Fumarase C C-terminus TH3_03210 PF00206 Lyase TH3_03235 PF01810 LysE type translocator TH3_03240 PF00440 Bacterial regulatory proteins, tetR family TH3_03255 PF00005 ABC transporter TH3_03255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_03260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_03260 PF00005 ABC transporter TH3_03265 PF00528 Binding-protein-dependent transport system inner membrane component TH3_03265 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_03270 PF00528 Binding-protein-dependent transport system inner membrane component TH3_03275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_03280 PF01212 Beta-eliminating lyase TH3_03285 PF01212 Beta-eliminating lyase TH3_03290 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_03290 PF00072 Response regulator receiver domain TH3_03305 PF01523 Putative modulator of DNA gyrase TH3_03320 PF02628 Cytochrome oxidase assembly protein TH3_03330 PF01507 Phosphoadenosine phosphosulfate reductase family TH3_03350 PF01966 HD domain TH3_03360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TH3_03360 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_03375 PF01835 MG2 domain TH3_03375 PF07678 A-macroglobulin TED domain TH3_03375 PF00207 Alpha-2-macroglobulin family TH3_03375 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain TH3_03375 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain TH3_03375 PF17962 Bacterial macroglobulin domain 6 TH3_03375 PF11974 Bacterial alpha-2-macroglobulin MG3 domain TH3_03375 PF07703 Alpha-2-macroglobulin bait region domain TH3_03375 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TH3_03380 PF00912 Transglycosylase TH3_03380 PF00905 Penicillin binding protein transpeptidase domain TH3_03380 PF06832 Penicillin-Binding Protein C-terminus Family TH3_03385 PF01037 Lrp/AsnC ligand binding domain TH3_03390 PF00291 Pyridoxal-phosphate dependent enzyme TH3_03395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_03410 PF01202 Shikimate kinase TH3_03415 PF00356 Bacterial regulatory proteins, lacI family TH3_03415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family TH3_03420 PF01205 Uncharacterized protein family UPF0029 TH3_03420 PF09186 Domain of unknown function (DUF1949) TH3_03440 PF01474 Class-II DAHP synthetase family TH3_03455 PF01906 Putative heavy-metal-binding TH3_03460 PF01906 Putative heavy-metal-binding TH3_03465 PF02540 NAD synthase TH3_03465 PF00795 Carbon-nitrogen hydrolase TH3_03470 PF00749 tRNA synthetases class I (E and Q), catalytic domain TH3_03475 PF09190 DALR domain TH3_03475 PF01406 tRNA synthetases class I (C) catalytic domain TH3_03480 PF02627 Carboxymuconolactone decarboxylase family TH3_03485 PF13411 MerR HTH family regulatory protein TH3_03515 PF00682 HMGL-like TH3_03515 PF08502 LeuA allosteric (dimerisation) domain TH3_03525 PF00491 Arginase family TH3_03530 PF00005 ABC transporter TH3_03535 PF00528 Binding-protein-dependent transport system inner membrane component TH3_03550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_03550 PF00672 HAMP domain TH3_03555 PF00163 Ribosomal protein S4/S9 N-terminal domain TH3_03555 PF01479 S4 domain TH3_03565 PF00924 Mechanosensitive ion channel TH3_03570 PF00462 Glutaredoxin TH3_03575 PF00892 EamA-like transporter family TH3_03595 PF01494 FAD binding domain TH3_03600 PF04055 Radical SAM superfamily TH3_03600 PF06463 Molybdenum Cofactor Synthesis C TH3_03615 PF10090 Histidine phosphotransferase C-terminal domain TH3_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_03620 PF07194 P2 response regulator binding domain TH3_03620 PF01627 Hpt domain TH3_03620 PF02895 Signal transducing histidine kinase, homodimeric domain TH3_03620 PF01584 CheW-like domain TH3_03630 PF01966 HD domain TH3_03630 PF00072 Response regulator receiver domain TH3_03635 PF01339 CheB methylesterase TH3_03635 PF00072 Response regulator receiver domain TH3_03640 PF03705 CheR methyltransferase, all-alpha domain TH3_03640 PF01739 CheR methyltransferase, SAM binding domain TH3_03645 PF00072 Response regulator receiver domain TH3_03645 PF00486 Transcriptional regulatory protein, C terminal TH3_03650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TH3_03650 PF02874 ATP synthase alpha/beta family, beta-barrel domain TH3_03650 PF18269 T3SS EscN ATPase C-terminal domain TH3_03660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TH3_03660 PF03129 Anticodon binding domain TH3_03660 PF04073 Aminoacyl-tRNA editing domain TH3_03665 PF03741 Integral membrane protein TerC family TH3_03670 PF13416 Bacterial extracellular solute-binding protein TH3_03675 PF00528 Binding-protein-dependent transport system inner membrane component TH3_03680 PF00005 ABC transporter TH3_03685 PF13640 2OG-Fe(II) oxygenase superfamily TH3_03685 PF18331 PKHD-type hydroxylase C-terminal domain TH3_03695 PF01042 Endoribonuclease L-PSP TH3_03710 PF10609 NUBPL iron-transfer P-loop NTPase TH3_03720 PF00771 FHIPEP family TH3_03725 PF02954 Bacterial regulatory protein, Fis family TH3_03725 PF00158 Sigma-54 interaction domain TH3_03730 PF01618 MotA/TolQ/ExbB proton channel family TH3_03735 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TH3_03745 PF01514 Secretory protein of YscJ/FliF family TH3_03745 PF08345 Flagellar M-ring protein C-terminal TH3_03750 PF07559 Flagellar basal body protein FlaE TH3_03750 PF00460 Flagella basal body rod protein TH3_03750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TH3_03755 PF13860 FlgD Ig-like domain TH3_03755 PF03963 Flagellar hook capping protein - N-terminal region TH3_03755 PF13861 FlgD Tudor-like domain TH3_03770 PF02465 Flagellar hook-associated protein 2 N-terminus TH3_03770 PF07195 Flagellar hook-associated protein 2 C-terminus TH3_03775 PF00669 Bacterial flagellin N-terminal helical region TH3_03775 PF00700 Bacterial flagellin C-terminal helical region TH3_03780 PF00700 Bacterial flagellin C-terminal helical region TH3_03780 PF00669 Bacterial flagellin N-terminal helical region TH3_03780 PF07196 Flagellin hook IN motif TH3_03785 PF00700 Bacterial flagellin C-terminal helical region TH3_03785 PF00669 Bacterial flagellin N-terminal helical region TH3_03795 PF00700 Bacterial flagellin C-terminal helical region TH3_03795 PF00669 Bacterial flagellin N-terminal helical region TH3_03800 PF00700 Bacterial flagellin C-terminal helical region TH3_03800 PF00669 Bacterial flagellin N-terminal helical region TH3_03815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TH3_03815 PF00460 Flagella basal body rod protein TH3_03825 PF10135 Rod binding protein TH3_03830 PF02119 Flagellar P-ring protein TH3_03835 PF10768 Class II flagellar assembly regulator TH3_03840 PF01258 Prokaryotic dksA/traR C4-type zinc finger TH3_03845 PF02107 Flagellar L-ring protein TH3_03855 PF00460 Flagella basal body rod protein TH3_03855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TH3_03860 PF00460 Flagella basal body rod protein TH3_03860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TH3_03865 PF03748 Flagellar basal body-associated protein FliL TH3_03870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TH3_03870 PF02154 Flagellar motor switch protein FliM TH3_03885 PF00072 Response regulator receiver domain TH3_03900 PF00691 OmpA family TH3_03900 PF13677 Membrane MotB of proton-channel complex MotA/MotB TH3_03925 PF00813 FliP family TH3_03940 PF01312 FlhB HrpN YscU SpaS Family TH3_03945 PF02599 Global regulator protein family TH3_03950 PF00460 Flagella basal body rod protein TH3_03955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TH3_03955 PF00460 Flagella basal body rod protein TH3_03960 PF02049 Flagellar hook-basal body complex protein FliE TH3_03965 PF01313 Bacterial export proteins, family 3 TH3_03970 PF01311 Bacterial export proteins, family 1 TH3_03975 PF01312 FlhB HrpN YscU SpaS Family TH3_03985 PF00072 Response regulator receiver domain TH3_03985 PF08448 PAS fold TH3_03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_03985 PF00512 His Kinase A (phospho-acceptor) domain TH3_03985 PF13188 PAS domain TH3_03995 PF01699 Sodium/calcium exchanger protein TH3_04020 PF01402 Ribbon-helix-helix protein, copG family TH3_04020 PF08753 NikR C terminal nickel binding domain TH3_04025 PF00154 recA bacterial DNA recombination protein TH3_04045 PF07043 Protein of unknown function (DUF1328) TH3_04065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TH3_04065 PF02272 DHHA1 domain TH3_04065 PF01411 tRNA synthetases class II (A) TH3_04070 PF10011 Predicted membrane protein (DUF2254) TH3_04080 PF07690 Major Facilitator Superfamily TH3_04090 PF14525 AraC-binding-like domain TH3_04090 PF12833 Helix-turn-helix domain TH3_04100 PF07724 AAA domain (Cdc48 subfamily) TH3_04100 PF10431 C-terminal, D2-small domain, of ClpB protein TH3_04100 PF00004 ATPase family associated with various cellular activities (AAA) TH3_04100 PF17871 AAA lid domain TH3_04100 PF02861 Clp amino terminal domain, pathogenicity island component TH3_04120 PF01546 Peptidase family M20/M25/M40 TH3_04125 PF03009 Glycerophosphoryl diester phosphodiesterase family TH3_04130 PF03358 NADPH-dependent FMN reductase TH3_04135 PF05726 Pirin C-terminal cupin domain TH3_04135 PF02678 Pirin TH3_04160 PF04542 Sigma-70 region 2 TH3_04160 PF08281 Sigma-70, region 4 TH3_04170 PF00180 Isocitrate/isopropylmalate dehydrogenase TH3_04190 PF13533 Biotin-lipoyl like TH3_04195 PF07690 Major Facilitator Superfamily TH3_04210 PF00528 Binding-protein-dependent transport system inner membrane component TH3_04215 PF00528 Binding-protein-dependent transport system inner membrane component TH3_04220 PF13416 Bacterial extracellular solute-binding protein TH3_04225 PF00005 ABC transporter TH3_04230 PF08220 DeoR-like helix-turn-helix domain TH3_04230 PF00455 DeoR C terminal sensor domain TH3_04235 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_04245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_04245 PF03466 LysR substrate binding domain TH3_04250 PF00034 Cytochrome c TH3_04250 PF03150 Di-haem cytochrome c peroxidase TH3_04255 PF03641 Possible lysine decarboxylase TH3_04270 PF02666 Phosphatidylserine decarboxylase TH3_04275 PF01066 CDP-alcohol phosphatidyltransferase TH3_04290 PF00873 AcrB/AcrD/AcrF family TH3_04305 PF12833 Helix-turn-helix domain TH3_04305 PF12852 Cupin TH3_04330 PF04055 Radical SAM superfamily TH3_04335 PF01242 6-pyruvoyl tetrahydropterin synthase TH3_04340 PF06508 Queuosine biosynthesis protein QueC TH3_04345 PF01209 ubiE/COQ5 methyltransferase family TH3_04360 PF00080 Copper/zinc superoxide dismutase (SODC) TH3_04375 PF09334 tRNA synthetases class I (M) TH3_04375 PF13603 Leucyl-tRNA synthetase, Domain 2 TH3_04375 PF08264 Anticodon-binding domain of tRNA TH3_04385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TH3_04385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TH3_04385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TH3_04395 PF00534 Glycosyl transferases group 1 TH3_04395 PF13439 Glycosyltransferase Family 4 TH3_04420 PF00534 Glycosyl transferases group 1 TH3_04430 PF03808 Glycosyl transferase WecB/TagA/CpsF family TH3_04435 PF02706 Chain length determinant protein TH3_04435 PF13807 G-rich domain on putative tyrosine kinase TH3_04435 PF13614 AAA domain TH3_04465 PF04408 Helicase associated domain (HA2) TH3_04465 PF08482 ATP-dependent helicase C-terminal TH3_04465 PF00270 DEAD/DEAH box helicase TH3_04465 PF00271 Helicase conserved C-terminal domain TH3_04475 PF01272 Transcription elongation factor, GreA/GreB, C-term TH3_04475 PF03449 Transcription elongation factor, N-terminal TH3_04485 PF03466 LysR substrate binding domain TH3_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_04505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TH3_04505 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TH3_04515 PF03707 Bacterial signalling protein N terminal repeat TH3_04515 PF00563 EAL domain TH3_04515 PF00990 Diguanylate cyclase, GGDEF domain TH3_04540 PF04945 YHS domain TH3_04545 PF03729 Short repeat of unknown function (DUF308) TH3_04550 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase TH3_04550 PF03033 Glycosyltransferase family 28 N-terminal domain TH3_04555 PF04851 Type III restriction enzyme, res subunit TH3_04555 PF13307 Helicase C-terminal domain TH3_04570 PF01810 LysE type translocator TH3_04580 PF09335 SNARE associated Golgi protein TH3_04590 PF02566 OsmC-like protein TH3_04595 PF07859 alpha/beta hydrolase fold TH3_04600 PF01047 MarR family TH3_04615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_04615 PF00672 HAMP domain TH3_04625 PF00990 Diguanylate cyclase, GGDEF domain TH3_04625 PF03707 Bacterial signalling protein N terminal repeat TH3_04625 PF00563 EAL domain TH3_04630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_04630 PF00512 His Kinase A (phospho-acceptor) domain TH3_04630 PF00989 PAS fold TH3_04635 PF01921 tRNA synthetases class I (K) TH3_04640 PF01619 Proline dehydrogenase TH3_04650 PF01063 Amino-transferase class IV TH3_04655 PF00356 Bacterial regulatory proteins, lacI family TH3_04665 PF00528 Binding-protein-dependent transport system inner membrane component TH3_04670 PF00005 ABC transporter TH3_04670 PF08402 TOBE domain TH3_04675 PF00459 Inositol monophosphatase family TH3_04680 PF00072 Response regulator receiver domain TH3_04680 PF01627 Hpt domain TH3_04680 PF00512 His Kinase A (phospho-acceptor) domain TH3_04680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_04680 PF00672 HAMP domain TH3_04680 PF17149 Periplasmic sensor domain found in signal transduction proteins TH3_04690 PF07411 Domain of unknown function (DUF1508) TH3_04730 PF01527 Transposase TH3_04775 PF00111 2Fe-2S iron-sulfur cluster binding domain TH3_04790 PF07484 Phage Tail Collar Domain TH3_04860 PF00440 Bacterial regulatory proteins, tetR family TH3_04895 PF13344 Haloacid dehalogenase-like hydrolase TH3_04895 PF00293 NUDIX domain TH3_04930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TH3_04930 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_04940 PF01180 Dihydroorotate dehydrogenase TH3_04965 PF00892 EamA-like transporter family TH3_04970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_04975 PF00528 Binding-protein-dependent transport system inner membrane component TH3_04980 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_04980 PF00528 Binding-protein-dependent transport system inner membrane component TH3_04985 PF00005 ABC transporter TH3_04985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_04990 PF01063 Amino-transferase class IV TH3_04995 PF00797 N-acetyltransferase TH3_05030 PF08281 Sigma-70, region 4 TH3_05030 PF12680 SnoaL-like domain TH3_05030 PF04542 Sigma-70 region 2 TH3_05040 PF07715 TonB-dependent Receptor Plug Domain TH3_05040 PF00593 TonB dependent receptor TH3_05045 PF01738 Dienelactone hydrolase family TH3_05050 PF05724 Thiopurine S-methyltransferase (TPMT) TH3_05060 PF02653 Branched-chain amino acid transport system / permease component TH3_05065 PF00005 ABC transporter TH3_05085 PF16859 Tetracyclin repressor-like, C-terminal domain TH3_05085 PF00440 Bacterial regulatory proteins, tetR family TH3_05090 PF00529 HlyD membrane-fusion protein of T1SS TH3_05090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TH3_05095 PF00873 AcrB/AcrD/AcrF family TH3_05115 PF01546 Peptidase family M20/M25/M40 TH3_05115 PF07687 Peptidase dimerisation domain TH3_05120 PF01513 ATP-NAD kinase TH3_05125 PF00440 Bacterial regulatory proteins, tetR family TH3_05125 PF16925 Tetracyclin repressor-like, C-terminal domain TH3_05135 PF04143 Sulphur transport TH3_05140 PF00271 Helicase conserved C-terminal domain TH3_05140 PF00270 DEAD/DEAH box helicase TH3_05145 PF00313 'Cold-shock' DNA-binding domain TH3_05150 PF00392 Bacterial regulatory proteins, gntR family TH3_05150 PF07729 FCD domain TH3_05160 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05170 PF00005 ABC transporter TH3_05180 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TH3_05185 PF00171 Aldehyde dehydrogenase family TH3_05200 PF16884 N-terminal domain of oxidoreductase TH3_05200 PF00107 Zinc-binding dehydrogenase TH3_05205 PF03073 TspO/MBR family TH3_05210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_05210 PF00672 HAMP domain TH3_05210 PF17200 Single Cache domain 2 TH3_05215 PF07683 Cobalamin synthesis protein cobW C-terminal domain TH3_05215 PF02492 CobW/HypB/UreG, nucleotide-binding domain TH3_05220 PF02798 Glutathione S-transferase, N-terminal domain TH3_05220 PF00043 Glutathione S-transferase, C-terminal domain TH3_05225 PF02798 Glutathione S-transferase, N-terminal domain TH3_05230 PF07690 Major Facilitator Superfamily TH3_05230 PF00083 Sugar (and other) transporter TH3_05235 PF06481 COX Aromatic Rich Motif TH3_05235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TH3_05240 PF00115 Cytochrome C and Quinol oxidase polypeptide I TH3_05245 PF00510 Cytochrome c oxidase subunit III TH3_05250 PF03626 Prokaryotic Cytochrome C oxidase subunit IV TH3_05255 PF02104 SURF1 family TH3_05265 PF01209 ubiE/COQ5 methyltransferase family TH3_05270 PF17922 Tetracyclin repressor-like, C-terminal domain TH3_05270 PF00440 Bacterial regulatory proteins, tetR family TH3_05275 PF01741 Large-conductance mechanosensitive channel, MscL TH3_05280 PF00186 Dihydrofolate reductase TH3_05285 PF00303 Thymidylate synthase TH3_05295 PF05681 Fumarate hydratase (Fumerase) TH3_05295 PF05683 Fumarase C-terminus TH3_05305 PF17200 Single Cache domain 2 TH3_05305 PF00672 HAMP domain TH3_05305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_05310 PF05145 Transition state regulatory protein AbrB TH3_05315 PF00857 Isochorismatase family TH3_05335 PF08279 HTH domain TH3_05335 PF13280 WYL domain TH3_05345 PF13188 PAS domain TH3_05345 PF03707 Bacterial signalling protein N terminal repeat TH3_05345 PF00990 Diguanylate cyclase, GGDEF domain TH3_05345 PF00563 EAL domain TH3_05355 PF00072 Response regulator receiver domain TH3_05355 PF00990 Diguanylate cyclase, GGDEF domain TH3_05360 PF01740 STAS domain TH3_05365 PF02954 Bacterial regulatory protein, Fis family TH3_05365 PF00072 Response regulator receiver domain TH3_05365 PF00158 Sigma-54 interaction domain TH3_05370 PF00155 Aminotransferase class I and II TH3_05380 PF00512 His Kinase A (phospho-acceptor) domain TH3_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_05380 PF09308 LuxQ, periplasmic TH3_05380 PF00072 Response regulator receiver domain TH3_05395 PF03009 Glycerophosphoryl diester phosphodiesterase family TH3_05400 PF13407 Periplasmic binding protein domain TH3_05405 PF00990 Diguanylate cyclase, GGDEF domain TH3_05405 PF00072 Response regulator receiver domain TH3_05410 PF01098 Cell cycle protein TH3_05415 PF00905 Penicillin binding protein transpeptidase domain TH3_05415 PF03717 Penicillin-binding Protein dimerisation domain TH3_05425 PF04085 rod shape-determining protein MreC TH3_05440 PF00682 HMGL-like TH3_05440 PF08502 LeuA allosteric (dimerisation) domain TH3_05445 PF01810 LysE type translocator TH3_05460 PF00990 Diguanylate cyclase, GGDEF domain TH3_05465 PF00313 'Cold-shock' DNA-binding domain TH3_05470 PF01812 5-formyltetrahydrofolate cyclo-ligase family TH3_05475 PF05721 Phytanoyl-CoA dioxygenase (PhyH) TH3_05480 PF02541 Ppx/GppA phosphatase family TH3_05485 PF01728 FtsJ-like methyltransferase TH3_05490 PF08447 PAS fold TH3_05490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_05495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_05500 PF00478 IMP dehydrogenase / GMP reductase domain TH3_05500 PF00571 CBS domain TH3_05505 PF01029 NusB family TH3_05505 PF01189 16S rRNA methyltransferase RsmB/F TH3_05515 PF02540 NAD synthase TH3_05515 PF00117 Glutamine amidotransferase class-I TH3_05515 PF00958 GMP synthase C terminal domain TH3_05520 PF08274 PhnA Zinc-Ribbon TH3_05520 PF03831 PhnA domain TH3_05535 PF13443 Cro/C1-type HTH DNA-binding domain TH3_05555 PF01022 Bacterial regulatory protein, arsR family TH3_05580 PF00403 Heavy-metal-associated domain TH3_05585 PF00497 Bacterial extracellular solute-binding proteins, family 3 TH3_05590 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05595 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05600 PF00005 ABC transporter TH3_05640 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TH3_05645 PF00005 ABC transporter TH3_05645 PF17912 MalK OB fold domain TH3_05650 PF13416 Bacterial extracellular solute-binding protein TH3_05655 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05660 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05670 PF01322 Cytochrome C' TH3_05675 PF00171 Aldehyde dehydrogenase family TH3_05680 PF12697 Alpha/beta hydrolase family TH3_05685 PF00293 NUDIX domain TH3_05710 PF01547 Bacterial extracellular solute-binding protein TH3_05715 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05720 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05725 PF00128 Alpha amylase, catalytic domain TH3_05730 PF08402 TOBE domain TH3_05730 PF00005 ABC transporter TH3_05735 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TH3_05735 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TH3_05740 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TH3_05745 PF00920 Dehydratase family TH3_05750 PF02685 Glucokinase TH3_05755 PF01081 KDPG and KHG aldolase TH3_05765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_05765 PF03466 LysR substrate binding domain TH3_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_05780 PF04542 Sigma-70 region 2 TH3_05780 PF04545 Sigma-70, region 4 TH3_05805 PF01297 Zinc-uptake complex component A periplasmic TH3_05825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_05830 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05835 PF00528 Binding-protein-dependent transport system inner membrane component TH3_05840 PF04293 SpoVR like protein TH3_05845 PF04285 Protein of unknown function (DUF444) TH3_05850 PF06798 PrkA serine protein kinase C-terminal domain TH3_05850 PF08298 PrkA AAA domain TH3_05855 PF00581 Rhodanese-like domain TH3_05870 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_05880 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_05890 PF01042 Endoribonuclease L-PSP TH3_05895 PF01042 Endoribonuclease L-PSP TH3_05900 PF00440 Bacterial regulatory proteins, tetR family TH3_05915 PF00588 SpoU rRNA Methylase family TH3_05915 PF08032 RNA 2'-O ribose methyltransferase substrate binding TH3_05920 PF03143 Elongation factor Tu C-terminal domain TH3_05920 PF00009 Elongation factor Tu GTP binding domain TH3_05920 PF03144 Elongation factor Tu domain 2 TH3_05925 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TH3_05930 PF00467 KOW motif TH3_05930 PF02357 Transcription termination factor nusG TH3_05935 PF00298 Ribosomal protein L11, RNA binding domain TH3_05935 PF03946 Ribosomal protein L11, N-terminal domain TH3_05940 PF00687 Ribosomal protein L1p/L10e family TH3_05945 PF00466 Ribosomal protein L10 TH3_05955 PF16320 Ribosomal protein L7/L12 dimerisation domain TH3_05955 PF00542 Ribosomal protein L7/L12 C-terminal domain TH3_05960 PF00562 RNA polymerase Rpb2, domain 6 TH3_05960 PF04560 RNA polymerase Rpb2, domain 7 TH3_05960 PF04563 RNA polymerase beta subunit TH3_05960 PF04561 RNA polymerase Rpb2, domain 2 TH3_05960 PF04565 RNA polymerase Rpb2, domain 3 TH3_05960 PF10385 RNA polymerase beta subunit external 1 domain TH3_05965 PF05000 RNA polymerase Rpb1, domain 4 TH3_05965 PF04997 RNA polymerase Rpb1, domain 1 TH3_05965 PF04998 RNA polymerase Rpb1, domain 5 TH3_05965 PF04983 RNA polymerase Rpb1, domain 3 TH3_05965 PF00623 RNA polymerase Rpb1, domain 2 TH3_05970 PF00164 Ribosomal protein S12/S23 TH3_05975 PF00177 Ribosomal protein S7p/S5e TH3_05980 PF00679 Elongation factor G C-terminus TH3_05980 PF14492 Elongation Factor G, domain II TH3_05980 PF03764 Elongation factor G, domain IV TH3_05980 PF00009 Elongation factor Tu GTP binding domain TH3_05980 PF03144 Elongation factor Tu domain 2 TH3_05985 PF03144 Elongation factor Tu domain 2 TH3_05985 PF03143 Elongation factor Tu C-terminal domain TH3_05985 PF00009 Elongation factor Tu GTP binding domain TH3_05990 PF00338 Ribosomal protein S10p/S20e TH3_05995 PF00297 Ribosomal protein L3 TH3_06000 PF00573 Ribosomal protein L4/L1 family TH3_06005 PF00276 Ribosomal protein L23 TH3_06010 PF00181 Ribosomal Proteins L2, RNA binding domain TH3_06010 PF03947 Ribosomal Proteins L2, C-terminal domain TH3_06015 PF00203 Ribosomal protein S19 TH3_06020 PF00237 Ribosomal protein L22p/L17e TH3_06025 PF07650 KH domain TH3_06025 PF00189 Ribosomal protein S3, C-terminal domain TH3_06030 PF00252 Ribosomal protein L16p/L10e TH3_06035 PF00831 Ribosomal L29 protein TH3_06040 PF00366 Ribosomal protein S17 TH3_06045 PF00238 Ribosomal protein L14p/L23e TH3_06050 PF00467 KOW motif TH3_06050 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TH3_06055 PF00281 Ribosomal protein L5 TH3_06055 PF00673 ribosomal L5P family C-terminus TH3_06060 PF00253 Ribosomal protein S14p/S29e TH3_06065 PF00410 Ribosomal protein S8 TH3_06070 PF00347 Ribosomal protein L6 TH3_06075 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TH3_06080 PF03719 Ribosomal protein S5, C-terminal domain TH3_06080 PF00333 Ribosomal protein S5, N-terminal domain TH3_06085 PF00327 Ribosomal protein L30p/L7e TH3_06090 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TH3_06095 PF00344 SecY translocase TH3_06100 PF05191 Adenylate kinase, active site lid TH3_06105 PF00416 Ribosomal protein S13/S18 TH3_06110 PF00411 Ribosomal protein S11 TH3_06115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TH3_06115 PF01000 RNA polymerase Rpb3/RpoA insert domain TH3_06115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TH3_06120 PF01196 Ribosomal protein L17 TH3_06125 PF17820 PDZ domain TH3_06125 PF13180 PDZ domain TH3_06140 PF12002 MgsA AAA+ ATPase C terminal TH3_06140 PF16193 AAA C-terminal domain TH3_06140 PF00004 ATPase family associated with various cellular activities (AAA) TH3_06145 PF02525 Flavodoxin-like fold TH3_06155 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TH3_06160 PF00849 RNA pseudouridylate synthase TH3_06160 PF01479 S4 domain TH3_06170 PF13419 Haloacid dehalogenase-like hydrolase TH3_06185 PF01738 Dienelactone hydrolase family TH3_06190 PF00528 Binding-protein-dependent transport system inner membrane component TH3_06195 PF00005 ABC transporter TH3_06215 PF01039 Carboxyl transferase domain TH3_06220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TH3_06220 PF02785 Biotin carboxylase C-terminal domain TH3_06220 PF00289 Biotin carboxylase, N-terminal domain TH3_06220 PF00364 Biotin-requiring enzyme TH3_06225 PF00672 HAMP domain TH3_06225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_06245 PF00708 Acylphosphatase TH3_06260 PF01565 FAD binding domain TH3_06260 PF02913 FAD linked oxidases, C-terminal domain TH3_06265 PF01300 Telomere recombination TH3_06265 PF03481 Putative GTP-binding controlling metal-binding TH3_06275 PF00459 Inositol monophosphatase family TH3_06300 PF01875 Memo-like protein TH3_06310 PF13673 Acetyltransferase (GNAT) domain TH3_06310 PF00583 Acetyltransferase (GNAT) family TH3_06320 PF00883 Cytosol aminopeptidase family, catalytic domain TH3_06320 PF02789 Cytosol aminopeptidase family, N-terminal domain TH3_06345 PF00005 ABC transporter TH3_06345 PF09383 NIL domain TH3_06350 PF00528 Binding-protein-dependent transport system inner membrane component TH3_06355 PF03180 NLPA lipoprotein TH3_06375 PF07690 Major Facilitator Superfamily TH3_06390 PF01810 LysE type translocator TH3_06405 PF01758 Sodium Bile acid symporter family TH3_06410 PF03960 ArsC family TH3_06415 PF03358 NADPH-dependent FMN reductase TH3_06425 PF12852 Cupin TH3_06425 PF12833 Helix-turn-helix domain TH3_06435 PF12848 ABC transporter TH3_06435 PF00005 ABC transporter TH3_06440 PF00334 Nucleoside diphosphate kinase TH3_06460 PF00551 Formyl transferase TH3_06465 PF00586 AIR synthase related protein, N-terminal domain TH3_06465 PF02769 AIR synthase related protein, C-terminal domain TH3_06475 PF01594 AI-2E family transporter TH3_06480 PF11638 DnaA N-terminal domain TH3_06480 PF00308 Bacterial dnaA protein TH3_06480 PF08299 Bacterial dnaA protein helix-turn-helix TH3_06485 PF08443 RimK-like ATP-grasp domain TH3_06485 PF18030 RimK PreATP-grasp domain TH3_06490 PF08443 RimK-like ATP-grasp domain TH3_06490 PF18030 RimK PreATP-grasp domain TH3_06500 PF01612 3'-5' exonuclease TH3_06500 PF00570 HRDC domain TH3_06510 PF05368 NmrA-like family TH3_06515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_06515 PF03466 LysR substrate binding domain TH3_06525 PF02541 Ppx/GppA phosphatase family TH3_06530 PF02503 Polyphosphate kinase middle domain TH3_06530 PF13089 Polyphosphate kinase N-terminal domain TH3_06530 PF17941 Polyphosphate kinase C-terminal domain 1 TH3_06530 PF13090 Polyphosphate kinase C-terminal domain 2 TH3_06540 PF01336 OB-fold nucleic acid binding domain TH3_06540 PF00152 tRNA synthetases class II (D, K and N) TH3_06540 PF02938 GAD domain TH3_06555 PF01022 Bacterial regulatory protein, arsR family TH3_06560 PF00850 Histone deacetylase domain TH3_06575 PF02609 Exonuclease VII small subunit TH3_06580 PF00348 Polyprenyl synthetase TH3_06590 PF02779 Transketolase, pyrimidine binding domain TH3_06590 PF02780 Transketolase, C-terminal domain TH3_06590 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TH3_06595 PF07715 TonB-dependent Receptor Plug Domain TH3_06595 PF00593 TonB dependent receptor TH3_06615 PF00501 AMP-binding enzyme TH3_06615 PF13193 AMP-binding enzyme C-terminal domain TH3_06625 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_06635 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_06640 PF00392 Bacterial regulatory proteins, gntR family TH3_06640 PF07729 FCD domain TH3_06645 PF01479 S4 domain TH3_06645 PF01728 FtsJ-like methyltransferase TH3_06650 PF03928 Haem-degrading TH3_06655 PF03466 LysR substrate binding domain TH3_06655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_06680 PF01264 Chorismate synthase TH3_06690 PF03631 Virulence factor BrkB TH3_06700 PF00106 short chain dehydrogenase TH3_06705 PF00501 AMP-binding enzyme TH3_06705 PF13193 AMP-binding enzyme C-terminal domain TH3_06715 PF00924 Mechanosensitive ion channel TH3_06715 PF12795 Mechanosensitive ion channel porin domain TH3_06715 PF12794 Mechanosensitive ion channel inner membrane domain 1 TH3_06720 PF01047 MarR family TH3_06735 PF01556 DnaJ C terminal domain TH3_06735 PF00226 DnaJ domain TH3_06740 PF05433 Glycine zipper 2TM domain TH3_06740 PF16998 17 kDa outer membrane surface antigen TH3_06745 PF01243 Pyridoxamine 5'-phosphate oxidase TH3_06745 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TH3_06750 PF01022 Bacterial regulatory protein, arsR family TH3_06765 PF02586 SOS response associated peptidase (SRAP) TH3_06775 PF13508 Acetyltransferase (GNAT) domain TH3_06785 PF14760 Rnk N-terminus TH3_06785 PF01272 Transcription elongation factor, GreA/GreB, C-term TH3_06795 PF00155 Aminotransferase class I and II TH3_06800 PF00202 Aminotransferase class-III TH3_06835 PF02525 Flavodoxin-like fold TH3_06840 PF00156 Phosphoribosyl transferase domain TH3_06850 PF01740 STAS domain TH3_06850 PF00916 Sulfate permease family TH3_06855 PF00378 Enoyl-CoA hydratase/isomerase TH3_06855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TH3_06855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TH3_06860 PF07690 Major Facilitator Superfamily TH3_06865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_06870 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TH3_06875 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_06880 PF00072 Response regulator receiver domain TH3_06880 PF02954 Bacterial regulatory protein, Fis family TH3_06880 PF00158 Sigma-54 interaction domain TH3_06885 PF00512 His Kinase A (phospho-acceptor) domain TH3_06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_06895 PF03466 LysR substrate binding domain TH3_06900 PF07690 Major Facilitator Superfamily TH3_06910 PF00248 Aldo/keto reductase family TH3_06935 PF04055 Radical SAM superfamily TH3_06945 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_06950 PF02525 Flavodoxin-like fold TH3_06955 PF03466 LysR substrate binding domain TH3_06955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_06960 PF01261 Xylose isomerase-like TIM barrel TH3_06970 PF05161 MOFRL family TH3_06970 PF13660 Domain of unknown function (DUF4147) TH3_06975 PF00392 Bacterial regulatory proteins, gntR family TH3_06975 PF07729 FCD domain TH3_06985 PF04107 Glutamate-cysteine ligase family 2(GCS2) TH3_06990 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) TH3_07005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_07005 PF00672 HAMP domain TH3_07035 PF03594 Benzoate membrane transport protein TH3_07050 PF00691 OmpA family TH3_07050 PF13677 Membrane MotB of proton-channel complex MotA/MotB TH3_07065 PF00459 Inositol monophosphatase family TH3_07070 PF09285 Elongation factor P, C-terminal TH3_07070 PF08207 Elongation factor P (EF-P) KOW-like domain TH3_07070 PF01132 Elongation factor P (EF-P) OB domain TH3_07075 PF02581 Thiamine monophosphate synthase TH3_07085 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TH3_07085 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TH3_07090 PF02779 Transketolase, pyrimidine binding domain TH3_07090 PF00456 Transketolase, thiamine diphosphate binding domain TH3_07090 PF02780 Transketolase, C-terminal domain TH3_07100 PF05164 Cell division protein ZapA TH3_07105 PF13277 YmdB-like protein TH3_07115 PF12729 Four helix bundle sensory module for signal transduction TH3_07115 PF00672 HAMP domain TH3_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_07120 PF01709 Transcriptional regulator TH3_07125 PF02075 Crossover junction endodeoxyribonuclease RuvC TH3_07130 PF07499 RuvA, C-terminal domain TH3_07130 PF01330 RuvA N terminal domain TH3_07135 PF05496 Holliday junction DNA helicase RuvB P-loop domain TH3_07135 PF17864 RuvB AAA lid domain TH3_07135 PF05491 RuvB C-terminal winged helix domain TH3_07140 PF03061 Thioesterase superfamily TH3_07145 PF01618 MotA/TolQ/ExbB proton channel family TH3_07150 PF02472 Biopolymer transport protein ExbD/TolR TH3_07160 PF04052 TolB amino-terminal domain TH3_07160 PF07676 WD40-like Beta Propeller Repeat TH3_07165 PF00691 OmpA family TH3_07180 PF01171 PP-loop family TH3_07185 PF01434 Peptidase family M41 TH3_07185 PF06480 FtsH Extracellular TH3_07185 PF00004 ATPase family associated with various cellular activities (AAA) TH3_07185 PF17862 AAA+ lid domain TH3_07190 PF00809 Pterin binding enzyme TH3_07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_07210 PF00512 His Kinase A (phospho-acceptor) domain TH3_07210 PF02702 Osmosensitive K+ channel His kinase sensor domain TH3_07210 PF00582 Universal stress protein family TH3_07210 PF13493 Domain of unknown function (DUF4118) TH3_07215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TH3_07215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TH3_07215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TH3_07215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TH3_07220 PF02581 Thiamine monophosphate synthase TH3_07220 PF08543 Phosphomethylpyrimidine kinase TH3_07245 PF00920 Dehydratase family TH3_07255 PF01546 Peptidase family M20/M25/M40 TH3_07255 PF07687 Peptidase dimerisation domain TH3_07260 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_07270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_07275 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TH3_07280 PF03466 LysR substrate binding domain TH3_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_07285 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TH3_07285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TH3_07290 PF01037 Lrp/AsnC ligand binding domain TH3_07315 PF00528 Binding-protein-dependent transport system inner membrane component TH3_07320 PF00528 Binding-protein-dependent transport system inner membrane component TH3_07325 PF00005 ABC transporter TH3_07325 PF08402 TOBE domain TH3_07330 PF13416 Bacterial extracellular solute-binding protein TH3_07335 PF00120 Glutamine synthetase, catalytic domain TH3_07345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TH3_07345 PF13378 Enolase C-terminal domain-like TH3_07350 PF00072 Response regulator receiver domain TH3_07350 PF00990 Diguanylate cyclase, GGDEF domain TH3_07370 PF04193 PQ loop repeat TH3_07380 PF00005 ABC transporter TH3_07385 PF13533 Biotin-lipoyl like TH3_07395 PF00563 EAL domain TH3_07395 PF00990 Diguanylate cyclase, GGDEF domain TH3_07395 PF13426 PAS domain TH3_07405 PF08447 PAS fold TH3_07405 PF13426 PAS domain TH3_07405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_07410 PF00202 Aminotransferase class-III TH3_07415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_07415 PF03466 LysR substrate binding domain TH3_07430 PF02913 FAD linked oxidases, C-terminal domain TH3_07430 PF01565 FAD binding domain TH3_07430 PF13183 4Fe-4S dicluster domain TH3_07435 PF00005 ABC transporter TH3_07440 PF00528 Binding-protein-dependent transport system inner membrane component TH3_07445 PF09084 NMT1/THI5 like TH3_07450 PF00491 Arginase family TH3_07455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_07455 PF03466 LysR substrate binding domain TH3_07465 PF03466 LysR substrate binding domain TH3_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_07495 PF13505 Outer membrane protein beta-barrel domain TH3_07510 PF12464 Maltose acetyltransferase TH3_07510 PF14602 Hexapeptide repeat of succinyl-transferase TH3_07525 PF00486 Transcriptional regulatory protein, C terminal TH3_07525 PF00072 Response regulator receiver domain TH3_07530 PF00512 His Kinase A (phospho-acceptor) domain TH3_07530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_07540 PF01850 PIN domain TH3_07545 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TH3_07550 PF00356 Bacterial regulatory proteins, lacI family TH3_07570 PF08402 TOBE domain TH3_07570 PF00005 ABC transporter TH3_07575 PF00149 Calcineurin-like phosphoesterase TH3_07580 PF01494 FAD binding domain TH3_07585 PF00893 Small Multidrug Resistance protein TH3_07590 PF01370 NAD dependent epimerase/dehydratase family TH3_07615 PF00884 Sulfatase TH3_07615 PF08019 Phosphoethanolamine transferase EptA/EptB TH3_07620 PF00440 Bacterial regulatory proteins, tetR family TH3_07620 PF08359 YsiA-like protein, C-terminal region TH3_07625 PF01894 Uncharacterised protein family UPF0047 TH3_07640 PF07732 Multicopper oxidase TH3_07640 PF00394 Multicopper oxidase TH3_07640 PF07731 Multicopper oxidase TH3_07645 PF05275 Copper resistance protein B precursor (CopB) TH3_07670 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TH3_07670 PF02867 Ribonucleotide reductase, barrel domain TH3_07690 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) TH3_07695 PF04264 YceI-like domain TH3_07700 PF01292 Prokaryotic cytochrome b561 TH3_07705 PF04264 YceI-like domain TH3_07715 PF17200 Single Cache domain 2 TH3_07715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_07715 PF00672 HAMP domain TH3_07720 PF02230 Phospholipase/Carboxylesterase TH3_07725 PF01554 MatE TH3_07730 PF01037 Lrp/AsnC ligand binding domain TH3_07740 PF02082 Transcriptional regulator TH3_07745 PF00270 DEAD/DEAH box helicase TH3_07745 PF00271 Helicase conserved C-terminal domain TH3_07755 PF12697 Alpha/beta hydrolase family TH3_07775 PF04960 Glutaminase TH3_07780 PF01751 Toprim domain TH3_07780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_07780 PF00204 DNA gyrase B TH3_07780 PF00986 DNA gyrase B subunit, carboxyl terminus TH3_07785 PF03061 Thioesterase superfamily TH3_07800 PF00106 short chain dehydrogenase TH3_07805 PF12833 Helix-turn-helix domain TH3_07805 PF10114 Sensory domain found in PocR TH3_07815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_07815 PF00005 ABC transporter TH3_07820 PF00005 ABC transporter TH3_07820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_07830 PF00528 Binding-protein-dependent transport system inner membrane component TH3_07835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_07850 PF02954 Bacterial regulatory protein, Fis family TH3_07850 PF00158 Sigma-54 interaction domain TH3_07850 PF00072 Response regulator receiver domain TH3_07855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TH3_07860 PF02887 Pyruvate kinase, alpha/beta domain TH3_07860 PF00224 Pyruvate kinase, barrel domain TH3_07880 PF01965 DJ-1/PfpI family TH3_07885 PF05552 Conserved TM helix TH3_07885 PF00924 Mechanosensitive ion channel TH3_07900 PF13380 CoA binding domain TH3_07905 PF01794 Ferric reductase like transmembrane component TH3_07915 PF00378 Enoyl-CoA hydratase/isomerase TH3_07940 PF00572 Ribosomal protein L13 TH3_07945 PF00380 Ribosomal protein S9/S16 TH3_07955 PF01070 FMN-dependent dehydrogenase TH3_07975 PF02774 Semialdehyde dehydrogenase, dimerisation domain TH3_07975 PF01118 Semialdehyde dehydrogenase, NAD binding domain TH3_07990 PF00892 EamA-like transporter family TH3_08000 PF00132 Bacterial transferase hexapeptide (six repeats) TH3_08010 PF03150 Di-haem cytochrome c peroxidase TH3_08015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TH3_08015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TH3_08020 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus TH3_08020 PF00561 alpha/beta hydrolase fold TH3_08030 PF00691 OmpA family TH3_08030 PF13488 Glycine zipper TH3_08035 PF00155 Aminotransferase class I and II TH3_08040 PF00742 Homoserine dehydrogenase TH3_08040 PF01842 ACT domain TH3_08040 PF03447 Homoserine dehydrogenase, NAD binding domain TH3_08045 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TH3_08050 PF00012 Hsp70 protein TH3_08065 PF01368 DHH family TH3_08065 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TH3_08065 PF02272 DHHA1 domain TH3_08065 PF17768 RecJ OB domain TH3_08080 PF07690 Major Facilitator Superfamily TH3_08085 PF11799 impB/mucB/samB family C-terminal domain TH3_08085 PF00817 impB/mucB/samB family TH3_08105 PF00753 Metallo-beta-lactamase superfamily TH3_08110 PF00691 OmpA family TH3_08110 PF13677 Membrane MotB of proton-channel complex MotA/MotB TH3_08115 PF01618 MotA/TolQ/ExbB proton channel family TH3_08120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_08120 PF00672 HAMP domain TH3_08135 PF00156 Phosphoribosyl transferase domain TH3_08155 PF01053 Cys/Met metabolism PLP-dependent enzyme TH3_08160 PF01266 FAD dependent oxidoreductase TH3_08165 PF12706 Beta-lactamase superfamily domain TH3_08170 PF09084 NMT1/THI5 like TH3_08175 PF00528 Binding-protein-dependent transport system inner membrane component TH3_08180 PF00005 ABC transporter TH3_08190 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB TH3_08190 PF08479 POTRA domain, ShlB-type TH3_08190 PF17287 POTRA domain TH3_08195 PF05594 Haemagluttinin repeat TH3_08195 PF13332 Hemagglutinin repeat TH3_08195 PF05860 haemagglutination activity domain TH3_08195 PF04829 Pre-toxin domain with VENN motif TH3_08240 PF00107 Zinc-binding dehydrogenase TH3_08240 PF08240 Alcohol dehydrogenase GroES-like domain TH3_08250 PF02515 CoA-transferase family III TH3_08255 PF00285 Citrate synthase, C-terminal domain TH3_08280 PF00850 Histone deacetylase domain TH3_08315 PF00248 Aldo/keto reductase family TH3_08320 PF07683 Cobalamin synthesis protein cobW C-terminal domain TH3_08320 PF02492 CobW/HypB/UreG, nucleotide-binding domain TH3_08325 PF01502 Phosphoribosyl-AMP cyclohydrolase TH3_08335 PF00005 ABC transporter TH3_08340 PF00950 ABC 3 transport family TH3_08350 PF01053 Cys/Met metabolism PLP-dependent enzyme TH3_08355 PF00291 Pyridoxal-phosphate dependent enzyme TH3_08360 PF01783 Ribosomal L32p protein family TH3_08375 PF00581 Rhodanese-like domain TH3_08380 PF01411 tRNA synthetases class II (A) TH3_08380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TH3_08425 PF02652 L-lactate permease TH3_08430 PF00296 Luciferase-like monooxygenase TH3_08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_08440 PF03466 LysR substrate binding domain TH3_08445 PF07690 Major Facilitator Superfamily TH3_08450 PF00291 Pyridoxal-phosphate dependent enzyme TH3_08455 PF00293 NUDIX domain TH3_08460 PF07694 5TMR of 5TMR-LYT TH3_08460 PF00990 Diguanylate cyclase, GGDEF domain TH3_08465 PF00583 Acetyltransferase (GNAT) family TH3_08470 PF07687 Peptidase dimerisation domain TH3_08470 PF01546 Peptidase family M20/M25/M40 TH3_08475 PF00226 DnaJ domain TH3_08475 PF01556 DnaJ C terminal domain TH3_08475 PF00684 DnaJ central domain TH3_08485 PF00444 Ribosomal protein L36 TH3_08490 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_08505 PF16653 Saccharopine dehydrogenase C-terminal domain TH3_08505 PF03435 Saccharopine dehydrogenase NADP binding domain TH3_08525 PF01925 Sulfite exporter TauE/SafE TH3_08530 PF01206 Sulfurtransferase TusA TH3_08535 PF13673 Acetyltransferase (GNAT) domain TH3_08545 PF03707 Bacterial signalling protein N terminal repeat TH3_08545 PF00990 Diguanylate cyclase, GGDEF domain TH3_08545 PF00563 EAL domain TH3_08555 PF00563 EAL domain TH3_08555 PF03707 Bacterial signalling protein N terminal repeat TH3_08555 PF00990 Diguanylate cyclase, GGDEF domain TH3_08570 PF05362 Lon protease (S16) C-terminal proteolytic domain TH3_08570 PF13654 AAA domain TH3_08575 PF00155 Aminotransferase class I and II TH3_08575 PF00392 Bacterial regulatory proteins, gntR family TH3_08585 PF00291 Pyridoxal-phosphate dependent enzyme TH3_08590 PF00155 Aminotransferase class I and II TH3_08595 PF02567 Phenazine biosynthesis-like protein TH3_08600 PF02080 TrkA-C domain TH3_08600 PF03600 Citrate transporter TH3_08610 PF13393 Histidyl-tRNA synthetase TH3_08615 PF00709 Adenylosuccinate synthetase TH3_08630 PF04545 Sigma-70, region 4 TH3_08630 PF04542 Sigma-70 region 2 TH3_08630 PF00140 Sigma-70 factor, region 1.2 TH3_08635 PF00849 RNA pseudouridylate synthase TH3_08650 PF13439 Glycosyltransferase Family 4 TH3_08655 PF12802 MarR family TH3_08660 PF00005 ABC transporter TH3_08660 PF00664 ABC transporter transmembrane region TH3_08665 PF00529 HlyD membrane-fusion protein of T1SS TH3_08675 PF00535 Glycosyl transferase family 2 TH3_08675 PF00534 Glycosyl transferases group 1 TH3_08680 PF08241 Methyltransferase domain TH3_08710 PF01370 NAD dependent epimerase/dehydratase family TH3_08725 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TH3_08730 PF11871 Domain of unknown function (DUF3391) TH3_08730 PF01966 HD domain TH3_08735 PF00005 ABC transporter TH3_08735 PF00571 CBS domain TH3_08740 PF00528 Binding-protein-dependent transport system inner membrane component TH3_08745 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TH3_08750 PF00528 Binding-protein-dependent transport system inner membrane component TH3_08755 PF00571 CBS domain TH3_08755 PF00005 ABC transporter TH3_08775 PF13416 Bacterial extracellular solute-binding protein TH3_08780 PF13416 Bacterial extracellular solute-binding protein TH3_08790 PF03453 MoeA N-terminal region (domain I and II) TH3_08790 PF00994 Probable molybdopterin binding domain TH3_08790 PF03454 MoeA C-terminal region (domain IV) TH3_08795 PF00753 Metallo-beta-lactamase superfamily TH3_08795 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TH3_08795 PF10996 Beta-Casp domain TH3_08805 PF00534 Glycosyl transferases group 1 TH3_08835 PF00005 ABC transporter TH3_08835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_08840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_08845 PF00528 Binding-protein-dependent transport system inner membrane component TH3_08850 PF00528 Binding-protein-dependent transport system inner membrane component TH3_08850 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_08855 PF07690 Major Facilitator Superfamily TH3_08865 PF12832 MFS_1 like family TH3_08870 PF05430 S-adenosyl-L-methionine-dependent methyltransferase TH3_08870 PF01266 FAD dependent oxidoreductase TH3_08875 PF01207 Dihydrouridine synthase (Dus) TH3_08880 PF03960 ArsC family TH3_08885 PF13419 Haloacid dehalogenase-like hydrolase TH3_08910 PF00471 Ribosomal protein L33 TH3_08915 PF13180 PDZ domain TH3_08915 PF03572 Peptidase family S41 TH3_08930 PF00773 RNB domain TH3_08930 PF00575 S1 RNA binding domain TH3_08930 PF08206 Ribonuclease B OB domain TH3_08930 PF08461 Ribonuclease R winged-helix domain TH3_08930 PF17876 Cold shock domain TH3_08935 PF01131 DNA topoisomerase TH3_08935 PF01751 Toprim domain TH3_08935 PF13368 Topoisomerase C-terminal repeat TH3_08935 PF01396 Topoisomerase DNA binding C4 zinc finger TH3_08940 PF02481 DNA recombination-mediator protein A TH3_08945 PF02660 Glycerol-3-phosphate acyltransferase TH3_08950 PF01979 Amidohydrolase family TH3_08955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TH3_08955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TH3_08970 PF03652 Holliday junction resolvase TH3_08975 PF02686 Glu-tRNAGln amidotransferase C subunit TH3_08980 PF01425 Amidase TH3_08985 PF02934 GatB/GatE catalytic domain TH3_08985 PF02637 GatB domain TH3_08995 PF00672 HAMP domain TH3_08995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_09005 PF07690 Major Facilitator Superfamily TH3_09010 PF00403 Heavy-metal-associated domain TH3_09015 PF01965 DJ-1/PfpI family TH3_09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_09020 PF03466 LysR substrate binding domain TH3_09025 PF00265 Thymidine kinase TH3_09030 PF01810 LysE type translocator TH3_09035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_09035 PF03466 LysR substrate binding domain TH3_09040 PF04403 Paraquat-inducible protein A TH3_09045 PF02470 MlaD protein TH3_09060 PF01965 DJ-1/PfpI family TH3_09060 PF12833 Helix-turn-helix domain TH3_09065 PF07690 Major Facilitator Superfamily TH3_09095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_09105 PF03951 Glutamine synthetase, beta-Grasp domain TH3_09105 PF00120 Glutamine synthetase, catalytic domain TH3_09110 PF00171 Aldehyde dehydrogenase family TH3_09115 PF00465 Iron-containing alcohol dehydrogenase TH3_09120 PF00117 Glutamine amidotransferase class-I TH3_09120 PF00958 GMP synthase C terminal domain TH3_09120 PF02540 NAD synthase TH3_09125 PF00294 pfkB family carbohydrate kinase TH3_09130 PF02872 5'-nucleotidase, C-terminal domain TH3_09130 PF00149 Calcineurin-like phosphoesterase TH3_09170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TH3_09175 PF01048 Phosphorylase superfamily TH3_09180 PF00591 Glycosyl transferase family, a/b domain TH3_09180 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TH3_09180 PF02885 Glycosyl transferase family, helical bundle domain TH3_09185 PF05199 GMC oxidoreductase TH3_09185 PF00732 GMC oxidoreductase TH3_09190 PF00939 Sodium:sulfate symporter transmembrane region TH3_09195 PF08220 DeoR-like helix-turn-helix domain TH3_09195 PF00455 DeoR C terminal sensor domain TH3_09200 PF00005 ABC transporter TH3_09215 PF00005 ABC transporter TH3_09220 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09225 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09230 PF00497 Bacterial extracellular solute-binding proteins, family 3 TH3_09235 PF00501 AMP-binding enzyme TH3_09235 PF13193 AMP-binding enzyme C-terminal domain TH3_09240 PF00994 Probable molybdopterin binding domain TH3_09250 PF00672 HAMP domain TH3_09250 PF16591 Helical bimodular sensor domain TH3_09250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_09260 PF09339 IclR helix-turn-helix domain TH3_09260 PF01614 Bacterial transcriptional regulator TH3_09265 PF01625 Peptide methionine sulfoxide reductase TH3_09290 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TH3_09290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TH3_09290 PF02824 TGS domain TH3_09290 PF03129 Anticodon binding domain TH3_09295 PF07690 Major Facilitator Superfamily TH3_09320 PF05698 Bacterial trigger factor protein (TF) C-terminus TH3_09325 PF03883 Peroxide stress protein YaaA TH3_09330 PF02885 Glycosyl transferase family, helical bundle domain TH3_09330 PF00591 Glycosyl transferase family, a/b domain TH3_09340 PF00005 ABC transporter TH3_09355 PF01891 Cobalt uptake substrate-specific transmembrane region TH3_09365 PF07549 SecD/SecF GG Motif TH3_09365 PF02355 Protein export membrane protein TH3_09385 PF00583 Acetyltransferase (GNAT) family TH3_09385 PF13380 CoA binding domain TH3_09385 PF13607 Succinyl-CoA ligase like flavodoxin domain TH3_09395 PF00248 Aldo/keto reductase family TH3_09405 PF00581 Rhodanese-like domain TH3_09410 PF02321 Outer membrane efflux protein TH3_09420 PF08264 Anticodon-binding domain of tRNA TH3_09420 PF00133 tRNA synthetases class I (I, L, M and V) TH3_09420 PF10458 Valyl tRNA synthetase tRNA binding arm TH3_09425 PF00425 chorismate binding enzyme TH3_09425 PF04715 Anthranilate synthase component I, N terminal region TH3_09430 PF00117 Glutamine amidotransferase class-I TH3_09435 PF01063 Amino-transferase class IV TH3_09450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TH3_09460 PF01521 Iron-sulphur cluster biosynthesis TH3_09465 PF00750 tRNA synthetases class I (R) TH3_09465 PF05746 DALR anticodon binding domain TH3_09465 PF03485 Arginyl tRNA synthetase N terminal domain TH3_09475 PF00933 Glycosyl hydrolase family 3 N terminal domain TH3_09480 PF02163 Peptidase family M50 TH3_09485 PF02616 Segregation and condensation protein ScpA TH3_09490 PF04079 Segregation and condensation complex subunit ScpB TH3_09495 PF00005 ABC transporter TH3_09495 PF08402 TOBE domain TH3_09500 PF02416 mttA/Hcf106 family TH3_09505 PF02416 mttA/Hcf106 family TH3_09510 PF00902 Sec-independent protein translocase protein (TatC) TH3_09515 PF02403 Seryl-tRNA synthetase N-terminal domain TH3_09515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TH3_09520 PF01975 Survival protein SurE TH3_09530 PF01476 LysM domain TH3_09530 PF01551 Peptidase family M23 TH3_09540 PF02699 Preprotein translocase subunit TH3_09545 PF02355 Protein export membrane protein TH3_09550 PF07549 SecD/SecF GG Motif TH3_09550 PF02355 Protein export membrane protein TH3_09560 PF04430 Protein of unknown function (DUF498/DUF598) TH3_09565 PF01593 Flavin containing amine oxidoreductase TH3_09570 PF00924 Mechanosensitive ion channel TH3_09585 PF01134 Glucose inhibited division protein A TH3_09595 PF17760 UvrA interaction domain TH3_09595 PF17755 UvrA DNA-binding domain TH3_09600 PF01116 Fructose-bisphosphate aldolase class-II TH3_09605 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TH3_09605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TH3_09610 PF01979 Amidohydrolase family TH3_09615 PF01380 SIS domain TH3_09625 PF01869 BadF/BadG/BcrA/BcrD ATPase family TH3_09630 PF13580 SIS domain TH3_09640 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09645 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09650 PF03459 TOBE domain TH3_09650 PF17912 MalK OB fold domain TH3_09650 PF00005 ABC transporter TH3_09655 PF13416 Bacterial extracellular solute-binding protein TH3_09660 PF00005 ABC transporter TH3_09660 PF08402 TOBE domain TH3_09665 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09670 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09675 PF13416 Bacterial extracellular solute-binding protein TH3_09680 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09685 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09690 PF00005 ABC transporter TH3_09690 PF17912 MalK OB fold domain TH3_09695 PF13185 GAF domain TH3_09700 PF00436 Single-strand binding protein family TH3_09715 PF02810 SEC-C motif TH3_09720 PF04542 Sigma-70 region 2 TH3_09720 PF04545 Sigma-70, region 4 TH3_09720 PF00140 Sigma-70 factor, region 1.2 TH3_09725 PF13344 Haloacid dehalogenase-like hydrolase TH3_09725 PF00293 NUDIX domain TH3_09740 PF17191 RecG wedge domain TH3_09740 PF00270 DEAD/DEAH box helicase TH3_09740 PF00271 Helicase conserved C-terminal domain TH3_09745 PF03937 Flavinator of succinate dehydrogenase TH3_09750 PF02559 CarD-like/TRCF domain TH3_09750 PF00270 DEAD/DEAH box helicase TH3_09750 PF00271 Helicase conserved C-terminal domain TH3_09750 PF03461 TRCF domain TH3_09750 PF17757 UvrB interaction domain TH3_09760 PF01676 Metalloenzyme superfamily TH3_09765 PF01791 DeoC/LacD family aldolase TH3_09775 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09780 PF00528 Binding-protein-dependent transport system inner membrane component TH3_09785 PF00497 Bacterial extracellular solute-binding proteins, family 3 TH3_09790 PF00005 ABC transporter TH3_09795 PF02743 Cache domain TH3_09795 PF00672 HAMP domain TH3_09795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_09800 PF13406 Transglycosylase SLT domain TH3_09805 PF05036 Sporulation related domain TH3_09805 PF03330 Lytic transglycolase TH3_09810 PF07943 Penicillin-binding protein 5, C-terminal domain TH3_09810 PF00768 D-alanyl-D-alanine carboxypeptidase TH3_09815 PF02223 Thymidylate kinase TH3_09820 PF09115 DNA polymerase III, delta subunit, C terminal TH3_09825 PF09334 tRNA synthetases class I (M) TH3_09825 PF08264 Anticodon-binding domain of tRNA TH3_09830 PF01026 TatD related DNase TH3_09835 PF12706 Beta-lactamase superfamily domain TH3_09835 PF03099 Biotin/lipoate A/B protein ligase family TH3_09840 PF01047 MarR family TH3_09845 PF00583 Acetyltransferase (GNAT) family TH3_09850 PF00202 Aminotransferase class-III TH3_09855 PF06339 Ectoine synthase TH3_09860 PF00696 Amino acid kinase family TH3_09860 PF13840 ACT domain TH3_09865 PF03819 MazG nucleotide pyrophosphohydrolase domain TH3_09870 PF00459 Inositol monophosphatase family TH3_09875 PF01926 50S ribosome-binding GTPase TH3_09875 PF16360 GTP-binding GTPase Middle Region TH3_09875 PF13167 GTP-binding GTPase N-terminal TH3_09880 PF17209 Hfq protein TH3_09890 PF02254 TrkA-N domain TH3_09890 PF02080 TrkA-C domain TH3_09895 PF00072 Response regulator receiver domain TH3_09895 PF00158 Sigma-54 interaction domain TH3_09895 PF02954 Bacterial regulatory protein, Fis family TH3_09900 PF00672 HAMP domain TH3_09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_09905 PF00158 Sigma-54 interaction domain TH3_09905 PF00072 Response regulator receiver domain TH3_09905 PF02954 Bacterial regulatory protein, Fis family TH3_09910 PF00989 PAS fold TH3_09910 PF00512 His Kinase A (phospho-acceptor) domain TH3_09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_09915 PF01207 Dihydrouridine synthase (Dus) TH3_09920 PF01578 Cytochrome C assembly protein TH3_09925 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TH3_09925 PF02542 YgbB family TH3_09930 PF04279 Intracellular septation protein A TH3_09935 PF03091 CutA1 divalent ion tolerance protein TH3_09950 PF13411 MerR HTH family regulatory protein TH3_09955 PF00216 Bacterial DNA-binding protein TH3_09960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TH3_09960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TH3_09965 PF02504 Fatty acid synthesis protein TH3_09985 PF02769 AIR synthase related protein, C-terminal domain TH3_09985 PF00586 AIR synthase related protein, N-terminal domain TH3_09990 PF01029 NusB family TH3_09995 PF00885 6,7-dimethyl-8-ribityllumazine synthase TH3_10000 PF00925 GTP cyclohydrolase II TH3_10000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TH3_10005 PF00677 Lumazine binding domain TH3_10010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TH3_10010 PF01872 RibD C-terminal domain TH3_10015 PF03477 ATP cone domain TH3_10020 PF00464 Serine hydroxymethyltransferase TH3_10025 PF02502 Ribose/Galactose Isomerase TH3_10030 PF05443 ROS/MUCR transcriptional regulator protein TH3_10035 PF13458 Periplasmic binding protein TH3_10045 PF00005 ABC transporter TH3_10050 PF00005 ABC transporter TH3_10050 PF12399 Branched-chain amino acid ATP-binding cassette transporter TH3_10055 PF11862 Domain of unknown function (DUF3382) TH3_10055 PF02653 Branched-chain amino acid transport system / permease component TH3_10060 PF02653 Branched-chain amino acid transport system / permease component TH3_10070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TH3_10070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TH3_10075 PF00378 Enoyl-CoA hydratase/isomerase TH3_10080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_10080 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_10080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_10085 PF01053 Cys/Met metabolism PLP-dependent enzyme TH3_10090 PF00455 DeoR C terminal sensor domain TH3_10090 PF08220 DeoR-like helix-turn-helix domain TH3_10100 PF00490 Delta-aminolevulinic acid dehydratase TH3_10110 PF00293 NUDIX domain TH3_10110 PF13344 Haloacid dehalogenase-like hydrolase TH3_10120 PF00501 AMP-binding enzyme TH3_10120 PF13193 AMP-binding enzyme C-terminal domain TH3_10130 PF00171 Aldehyde dehydrogenase family TH3_10135 PF00291 Pyridoxal-phosphate dependent enzyme TH3_10135 PF13291 ACT domain TH3_10140 PF01613 Flavin reductase like domain TH3_10145 PF01618 MotA/TolQ/ExbB proton channel family TH3_10150 PF00691 OmpA family TH3_10150 PF13677 Membrane MotB of proton-channel complex MotA/MotB TH3_10155 PF04376 Arginine-tRNA-protein transferase, N terminus TH3_10155 PF04377 Arginine-tRNA-protein transferase, C terminus TH3_10160 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_10165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_10175 PF03989 DNA gyrase C-terminal domain, beta-propeller TH3_10175 PF00521 DNA gyrase/topoisomerase IV, subunit A TH3_10180 PF02565 Recombination protein O C terminal TH3_10180 PF11967 Recombination protein O N terminal TH3_10190 PF07650 KH domain TH3_10190 PF01926 50S ribosome-binding GTPase TH3_10195 PF00035 Double-stranded RNA binding motif TH3_10195 PF14622 Ribonuclease-III-like TH3_10200 PF10502 Signal peptidase, peptidase S26 TH3_10205 PF01648 4'-phosphopantetheinyl transferase superfamily TH3_10210 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TH3_10220 PF13291 ACT domain TH3_10220 PF02824 TGS domain TH3_10220 PF04607 Region found in RelA / SpoT proteins TH3_10225 PF01192 RNA polymerase Rpb6 TH3_10240 PF03167 Uracil DNA glycosylase superfamily TH3_10245 PF09382 RQC domain TH3_10245 PF00271 Helicase conserved C-terminal domain TH3_10245 PF00570 HRDC domain TH3_10245 PF16124 RecQ zinc-binding TH3_10245 PF00270 DEAD/DEAH box helicase TH3_10250 PF00255 Glutathione peroxidase TH3_10255 PF00174 Oxidoreductase molybdopterin binding domain TH3_10260 PF01668 SmpB protein TH3_10265 PF00701 Dihydrodipicolinate synthetase family TH3_10270 PF10145 Phage-related minor tail protein TH3_10270 PF01464 Transglycosylase SLT domain TH3_10270 PF01551 Peptidase family M23 TH3_10275 PF13419 Haloacid dehalogenase-like hydrolase TH3_10285 PF01551 Peptidase family M23 TH3_10290 PF04608 Phosphatidylglycerophosphatase A TH3_10295 PF00994 Probable molybdopterin binding domain TH3_10295 PF02464 Competence-damaged protein TH3_10300 PF03364 Polyketide cyclase / dehydrase and lipid transport TH3_10305 PF04055 Radical SAM superfamily TH3_10310 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_10310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TH3_10315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TH3_10315 PF02817 e3 binding domain TH3_10315 PF00364 Biotin-requiring enzyme TH3_10320 PF02780 Transketolase, C-terminal domain TH3_10320 PF00364 Biotin-requiring enzyme TH3_10320 PF02779 Transketolase, pyrimidine binding domain TH3_10325 PF00676 Dehydrogenase E1 component TH3_10330 PF04977 Septum formation initiator TH3_10335 PF00113 Enolase, C-terminal TIM barrel domain TH3_10335 PF03952 Enolase, N-terminal domain TH3_10340 PF00793 DAHP synthetase I family TH3_10345 PF06418 CTP synthase N-terminus TH3_10345 PF00117 Glutamine amidotransferase class-I TH3_10355 PF00121 Triosephosphate isomerase TH3_10360 PF13145 PPIC-type PPIASE domain TH3_10365 PF04715 Anthranilate synthase component I, N terminal region TH3_10365 PF00425 chorismate binding enzyme TH3_10380 PF00012 Hsp70 protein TH3_10385 PF00012 Hsp70 protein TH3_10390 PF04748 Divergent polysaccharide deacetylase TH3_10395 PF00117 Glutamine amidotransferase class-I TH3_10400 PF00591 Glycosyl transferase family, a/b domain TH3_10400 PF02885 Glycosyl transferase family, helical bundle domain TH3_10405 PF00218 Indole-3-glycerol phosphate synthase TH3_10410 PF01967 MoaC family TH3_10415 PF00717 Peptidase S24-like TH3_10415 PF01726 LexA DNA binding domain TH3_10420 PF13567 Domain of unknown function (DUF4131) TH3_10420 PF03772 Competence protein TH3_10420 PF00753 Metallo-beta-lactamase superfamily TH3_10425 PF00749 tRNA synthetases class I (E and Q), catalytic domain TH3_10430 PF00285 Citrate synthase, C-terminal domain TH3_10435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TH3_10440 PF02684 Lipid-A-disaccharide synthetase TH3_10445 PF06230 LpxI C-terminal domain TH3_10445 PF17930 LpxI N-terminal domain TH3_10450 PF00132 Bacterial transferase hexapeptide (six repeats) TH3_10450 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TH3_10455 PF07977 FabA-like domain TH3_10460 PF00132 Bacterial transferase hexapeptide (six repeats) TH3_10460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TH3_10470 PF07244 Surface antigen variable number repeat TH3_10470 PF01103 Surface antigen TH3_10475 PF17820 PDZ domain TH3_10475 PF02163 Peptidase family M50 TH3_10480 PF13288 DXP reductoisomerase C-terminal domain TH3_10480 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TH3_10480 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TH3_10490 PF01255 Putative undecaprenyl diphosphate synthase TH3_10495 PF01765 Ribosome recycling factor TH3_10500 PF00696 Amino acid kinase family TH3_10505 PF00889 Elongation factor TS TH3_10510 PF00318 Ribosomal protein S2 TH3_10520 PF14579 Helix-hairpin-helix motif TH3_10520 PF07733 Bacterial DNA polymerase III alpha NTPase domain TH3_10520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TH3_10520 PF02811 PHP domain TH3_10525 PF00005 ABC transporter TH3_10530 PF02687 FtsX-like permease family TH3_10530 PF12704 MacB-like periplasmic core domain TH3_10535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TH3_10535 PF03129 Anticodon binding domain TH3_10555 PF12706 Beta-lactamase superfamily domain TH3_10555 PF17770 Ribonuclease J C-terminal domain TH3_10555 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TH3_10560 PF03309 Type III pantothenate kinase TH3_10565 PF03099 Biotin/lipoate A/B protein ligase family TH3_10565 PF02237 Biotin protein ligase C terminal domain TH3_10570 PF00361 Proton-conducting membrane transporter TH3_10575 PF00361 Proton-conducting membrane transporter TH3_10575 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TH3_10580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TH3_10580 PF00361 Proton-conducting membrane transporter TH3_10585 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TH3_10590 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TH3_10595 PF12838 4Fe-4S dicluster domain TH3_10600 PF00146 NADH dehydrogenase TH3_10605 PF00384 Molybdopterin oxidoreductase TH3_10605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TH3_10605 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TH3_10610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TH3_10610 PF10531 SLBB domain TH3_10610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TH3_10620 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TH3_10625 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TH3_10630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TH3_10635 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TH3_10640 PF01706 FliG C-terminal domain TH3_10640 PF14841 FliG middle domain TH3_10640 PF14842 FliG N-terminal domain TH3_10650 PF00216 Bacterial DNA-binding protein TH3_10655 PF00004 ATPase family associated with various cellular activities (AAA) TH3_10655 PF02190 ATP-dependent protease La (LON) substrate-binding domain TH3_10655 PF05362 Lon protease (S16) C-terminal proteolytic domain TH3_10660 PF10431 C-terminal, D2-small domain, of ClpB protein TH3_10660 PF06689 ClpX C4-type zinc finger TH3_10660 PF07724 AAA domain (Cdc48 subfamily) TH3_10665 PF00574 Clp protease TH3_10670 PF05697 Bacterial trigger factor protein (TF) TH3_10670 PF05698 Bacterial trigger factor protein (TF) C-terminus TH3_10670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TH3_10675 PF01256 Carbohydrate kinase TH3_10675 PF03853 YjeF-related protein N-terminus TH3_10680 PF01266 FAD dependent oxidoreductase TH3_10685 PF00512 His Kinase A (phospho-acceptor) domain TH3_10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_10685 PF00989 PAS fold TH3_10695 PF09278 MerR, DNA binding TH3_10695 PF00376 MerR family regulatory protein TH3_10700 PF00403 Heavy-metal-associated domain TH3_10705 PF00210 Ferritin-like domain TH3_10710 PF00210 Ferritin-like domain TH3_10715 PF04244 Deoxyribodipyrimidine photo-lyase-related protein TH3_10730 PF01547 Bacterial extracellular solute-binding protein TH3_10740 PF00528 Binding-protein-dependent transport system inner membrane component TH3_10745 PF00005 ABC transporter TH3_10745 PF17912 MalK OB fold domain TH3_10745 PF03459 TOBE domain TH3_10750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_10750 PF00672 HAMP domain TH3_10750 PF00512 His Kinase A (phospho-acceptor) domain TH3_10755 PF00486 Transcriptional regulatory protein, C terminal TH3_10755 PF00072 Response regulator receiver domain TH3_10765 PF01593 Flavin containing amine oxidoreductase TH3_10770 PF00342 Phosphoglucose isomerase TH3_10775 PF00294 pfkB family carbohydrate kinase TH3_10785 PF00491 Arginase family TH3_10790 PF00171 Aldehyde dehydrogenase family TH3_10795 PF01381 Helix-turn-helix TH3_10795 PF07883 Cupin domain TH3_10800 PF00120 Glutamine synthetase, catalytic domain TH3_10805 PF00202 Aminotransferase class-III TH3_10810 PF01266 FAD dependent oxidoreductase TH3_10825 PF01266 FAD dependent oxidoreductase TH3_10830 PF03313 Serine dehydratase alpha chain TH3_10835 PF05199 GMC oxidoreductase TH3_10835 PF00732 GMC oxidoreductase TH3_10840 PF00171 Aldehyde dehydrogenase family TH3_10845 PF13977 BetI-type transcriptional repressor, C-terminal TH3_10845 PF00440 Bacterial regulatory proteins, tetR family TH3_10850 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TH3_10855 PF00528 Binding-protein-dependent transport system inner membrane component TH3_10860 PF00571 CBS domain TH3_10860 PF00005 ABC transporter TH3_10870 PF03466 LysR substrate binding domain TH3_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_10880 PF00528 Binding-protein-dependent transport system inner membrane component TH3_10890 PF08402 TOBE domain TH3_10890 PF00005 ABC transporter TH3_10895 PF00202 Aminotransferase class-III TH3_10900 PF05853 beta-keto acid cleavage enzyme TH3_10905 PF00850 Histone deacetylase domain TH3_10910 PF01266 FAD dependent oxidoreductase TH3_10915 PF07687 Peptidase dimerisation domain TH3_10915 PF01546 Peptidase family M20/M25/M40 TH3_10920 PF01042 Endoribonuclease L-PSP TH3_10940 PF02423 Ornithine cyclodeaminase/mu-crystallin family TH3_10960 PF07171 MlrC C-terminus TH3_10960 PF07364 Metallopeptidase family M81 TH3_10965 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_10970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_10980 PF01380 SIS domain TH3_10980 PF01418 Helix-turn-helix domain, rpiR family TH3_10980 PF02685 Glucokinase TH3_10985 PF00294 pfkB family carbohydrate kinase TH3_10995 PF01103 Surface antigen TH3_10995 PF17243 POTRA domain TamA domain 1 TH3_11000 PF08443 RimK-like ATP-grasp domain TH3_11000 PF18030 RimK PreATP-grasp domain TH3_11010 PF01740 STAS domain TH3_11010 PF00916 Sulfate permease family TH3_11020 PF00753 Metallo-beta-lactamase superfamily TH3_11040 PF10397 Adenylosuccinate lyase C-terminus TH3_11040 PF00206 Lyase TH3_11045 PF02803 Thiolase, C-terminal domain TH3_11045 PF00108 Thiolase, N-terminal domain TH3_11050 PF01144 Coenzyme A transferase TH3_11055 PF01144 Coenzyme A transferase TH3_11065 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal TH3_11065 PF00775 Dioxygenase TH3_11070 PF02627 Carboxymuconolactone decarboxylase family TH3_11075 PF12146 Serine aminopeptidase, S33 TH3_11080 PF03466 LysR substrate binding domain TH3_11080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_11085 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_11095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_11110 PF00528 Binding-protein-dependent transport system inner membrane component TH3_11115 PF00005 ABC transporter TH3_11145 PF07690 Major Facilitator Superfamily TH3_11155 PF04954 Siderophore-interacting protein TH3_11155 PF08021 Siderophore-interacting FAD-binding domain TH3_11200 PF01494 FAD binding domain TH3_11235 PF00128 Alpha amylase, catalytic domain TH3_11245 PF03466 LysR substrate binding domain TH3_11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_11260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TH3_11260 PF00205 Thiamine pyrophosphate enzyme, central domain TH3_11260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TH3_11265 PF01614 Bacterial transcriptional regulator TH3_11265 PF09339 IclR helix-turn-helix domain TH3_11275 PF00583 Acetyltransferase (GNAT) family TH3_11290 PF07690 Major Facilitator Superfamily TH3_11295 PF05726 Pirin C-terminal cupin domain TH3_11295 PF02678 Pirin TH3_11300 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TH3_11310 PF00075 RNase H TH3_11340 PF00392 Bacterial regulatory proteins, gntR family TH3_11340 PF07729 FCD domain TH3_11350 PF02653 Branched-chain amino acid transport system / permease component TH3_11355 PF02653 Branched-chain amino acid transport system / permease component TH3_11360 PF00005 ABC transporter TH3_11365 PF13407 Periplasmic binding protein domain TH3_11370 PF01263 Aldose 1-epimerase TH3_11385 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_11390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TH3_11390 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_11395 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_11400 PF07729 FCD domain TH3_11400 PF00392 Bacterial regulatory proteins, gntR family TH3_11415 PF05114 Protein of unknown function (DUF692) TH3_11425 PF05199 GMC oxidoreductase TH3_11425 PF00732 GMC oxidoreductase TH3_11460 PF11940 Domain of unknown function (DUF3458) Ig-like fold TH3_11460 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TH3_11460 PF01433 Peptidase family M1 domain TH3_11465 PF00072 Response regulator receiver domain TH3_11465 PF00196 Bacterial regulatory proteins, luxR family TH3_11475 PF01594 AI-2E family transporter TH3_11480 PF12833 Helix-turn-helix domain TH3_11480 PF02311 AraC-like ligand binding domain TH3_11485 PF01810 LysE type translocator TH3_11500 PF00512 His Kinase A (phospho-acceptor) domain TH3_11500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_11510 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_11515 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_11535 PF12833 Helix-turn-helix domain TH3_11535 PF01965 DJ-1/PfpI family TH3_11545 PF07715 TonB-dependent Receptor Plug Domain TH3_11545 PF00593 TonB dependent receptor TH3_11560 PF03544 Gram-negative bacterial TonB protein C-terminal TH3_11565 PF02472 Biopolymer transport protein ExbD/TolR TH3_11570 PF02472 Biopolymer transport protein ExbD/TolR TH3_11575 PF01618 MotA/TolQ/ExbB proton channel family TH3_11580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TH3_11585 PF01467 Cytidylyltransferase-like TH3_11590 PF03989 DNA gyrase C-terminal domain, beta-propeller TH3_11590 PF00521 DNA gyrase/topoisomerase IV, subunit A TH3_11595 PF00892 EamA-like transporter family TH3_11615 PF01979 Amidohydrolase family TH3_11625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TH3_11625 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TH3_11630 PF00155 Aminotransferase class I and II TH3_11635 PF00543 Nitrogen regulatory protein P-II TH3_11640 PF00120 Glutamine synthetase, catalytic domain TH3_11640 PF03951 Glutamine synthetase, beta-Grasp domain TH3_11645 PF05230 MASE2 domain TH3_11645 PF00990 Diguanylate cyclase, GGDEF domain TH3_11655 PF02566 OsmC-like protein TH3_11680 PF00962 Adenosine/AMP deaminase TH3_11695 PF07729 FCD domain TH3_11695 PF00392 Bacterial regulatory proteins, gntR family TH3_11700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_11705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_11705 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TH3_11710 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_11715 PF00563 EAL domain TH3_11715 PF00990 Diguanylate cyclase, GGDEF domain TH3_11715 PF08448 PAS fold TH3_11720 PF12833 Helix-turn-helix domain TH3_11730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TH3_11730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_11730 PF01842 ACT domain TH3_11740 PF03466 LysR substrate binding domain TH3_11740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_11745 PF00892 EamA-like transporter family TH3_11755 PF16363 GDP-mannose 4,6 dehydratase TH3_11760 PF12833 Helix-turn-helix domain TH3_11760 PF12852 Cupin TH3_11795 PF03070 TENA/THI-4/PQQC family TH3_11800 PF04384 Iron-sulphur cluster assembly TH3_11805 PF00111 2Fe-2S iron-sulfur cluster binding domain TH3_11810 PF00012 Hsp70 protein TH3_11815 PF07743 HSCB C-terminal oligomerisation domain TH3_11820 PF01521 Iron-sulphur cluster biosynthesis TH3_11825 PF01592 NifU-like N terminal domain TH3_11830 PF00266 Aminotransferase class-V TH3_11835 PF00266 Aminotransferase class-V TH3_11840 PF02082 Transcriptional regulator TH3_11845 PF06426 Serine acetyltransferase, N-terminal TH3_11845 PF00132 Bacterial transferase hexapeptide (six repeats) TH3_11850 PF02129 X-Pro dipeptidyl-peptidase (S15 family) TH3_11860 PF03702 Anhydro-N-acetylmuramic acid kinase TH3_11865 PF00579 tRNA synthetases class I (W and Y) TH3_11875 PF08335 GlnD PII-uridylyltransferase TH3_11875 PF03710 Glutamate-ammonia ligase adenylyltransferase TH3_11880 PF00578 AhpC/TSA family TH3_11890 PF04305 Protein of unknown function (DUF455) TH3_11895 PF00107 Zinc-binding dehydrogenase TH3_11895 PF08240 Alcohol dehydrogenase GroES-like domain TH3_11900 PF02798 Glutathione S-transferase, N-terminal domain TH3_11905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TH3_11905 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TH3_11910 PF02805 Metal binding domain of Ada TH3_11910 PF06029 AlkA N-terminal domain TH3_11910 PF00730 HhH-GPD superfamily base excision DNA repair protein TH3_11910 PF12833 Helix-turn-helix domain TH3_11925 PF00472 RF-1 domain TH3_11925 PF03462 PCRF domain TH3_11935 PF17092 Penicillin-binding protein OB-like domain TH3_11935 PF00912 Transglycosylase TH3_11935 PF00905 Penicillin binding protein transpeptidase domain TH3_11940 PF01520 N-acetylmuramoyl-L-alanine amidase TH3_11950 PF10150 Ribonuclease E/G family TH3_11950 PF00575 S1 RNA binding domain TH3_11950 PF12111 Polyribonucleotide phosphorylase C terminal TH3_11965 PF01435 Peptidase family M48 TH3_11980 PF02597 ThiS family TH3_11980 PF05690 Thiazole biosynthesis protein ThiG TH3_11985 PF01220 Dehydroquinase class II TH3_11990 PF00364 Biotin-requiring enzyme TH3_11995 PF00289 Biotin carboxylase, N-terminal domain TH3_11995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TH3_11995 PF02785 Biotin carboxylase C-terminal domain TH3_12000 PF01810 LysE type translocator TH3_12005 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TH3_12015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_12015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TH3_12015 PF01842 ACT domain TH3_12025 PF17200 Single Cache domain 2 TH3_12025 PF00672 HAMP domain TH3_12025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_12040 PF00004 ATPase family associated with various cellular activities (AAA) TH3_12040 PF07724 AAA domain (Cdc48 subfamily) TH3_12040 PF10431 C-terminal, D2-small domain, of ClpB protein TH3_12040 PF02861 Clp amino terminal domain, pathogenicity island component TH3_12040 PF17871 AAA lid domain TH3_12045 PF02617 ATP-dependent Clp protease adaptor protein ClpS TH3_12060 PF07943 Penicillin-binding protein 5, C-terminal domain TH3_12060 PF00768 D-alanyl-D-alanine carboxypeptidase TH3_12065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TH3_12065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TH3_12065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TH3_12065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TH3_12070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TH3_12070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TH3_12070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TH3_12075 PF00483 Nucleotidyl transferase TH3_12080 PF00684 DnaJ central domain TH3_12080 PF01556 DnaJ C terminal domain TH3_12080 PF00226 DnaJ domain TH3_12090 PF13614 AAA domain TH3_12100 PF01266 FAD dependent oxidoreductase TH3_12105 PF03537 Glycoside-hydrolase family GH114 TH3_12110 PF01323 DSBA-like thioredoxin domain TH3_12120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TH3_12120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TH3_12125 PF04972 BON domain TH3_12130 PF00171 Aldehyde dehydrogenase family TH3_12130 PF01619 Proline dehydrogenase TH3_12130 PF14850 DNA-binding domain of Proline dehydrogenase TH3_12130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain TH3_12135 PF01037 Lrp/AsnC ligand binding domain TH3_12140 PF01323 DSBA-like thioredoxin domain TH3_12145 PF01039 Carboxyl transferase domain TH3_12150 PF00378 Enoyl-CoA hydratase/isomerase TH3_12155 PF02785 Biotin carboxylase C-terminal domain TH3_12155 PF00364 Biotin-requiring enzyme TH3_12155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TH3_12155 PF00289 Biotin carboxylase, N-terminal domain TH3_12160 PF00682 HMGL-like TH3_12170 PF00672 HAMP domain TH3_12170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_12195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TH3_12195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TH3_12210 PF03466 LysR substrate binding domain TH3_12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_12220 PF03976 Polyphosphate kinase 2 (PPK2) TH3_12225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TH3_12225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TH3_12230 PF13180 PDZ domain TH3_12230 PF03572 Peptidase family S41 TH3_12235 PF12806 Acetyl-CoA dehydrogenase C-terminal like TH3_12235 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_12235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_12235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_12240 PF03739 Lipopolysaccharide export system permease LptF/LptG TH3_12250 PF03968 OstA-like protein TH3_12250 PF04453 LPS transport system D TH3_12255 PF09312 SurA N-terminal domain TH3_12255 PF00639 PPIC-type PPIASE domain TH3_12260 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TH3_12265 PF00398 Ribosomal RNA adenine dimethylase TH3_12270 PF00625 Guanylate kinase TH3_12275 PF03755 YicC-like family, N-terminal region TH3_12275 PF08340 Domain of unknown function (DUF1732) TH3_12280 PF00106 short chain dehydrogenase TH3_12285 PF02618 YceG-like family TH3_12290 PF02801 Beta-ketoacyl synthase, C-terminal domain TH3_12290 PF00109 Beta-ketoacyl synthase, N-terminal domain TH3_12295 PF00550 Phosphopantetheine attachment site TH3_12305 PF00698 Acyl transferase domain TH3_12310 PF01250 Ribosomal protein S6 TH3_12315 PF01084 Ribosomal protein S18 TH3_12325 PF01281 Ribosomal protein L9, N-terminal domain TH3_12325 PF03948 Ribosomal protein L9, C-terminal domain TH3_12330 PF00772 DnaB-like helicase N terminal domain TH3_12330 PF03796 DnaB-like helicase C terminal domain TH3_12335 PF00842 Alanine racemase, C-terminal domain TH3_12335 PF01168 Alanine racemase, N-terminal domain TH3_12340 PF02405 Permease MlaE TH3_12345 PF00005 ABC transporter TH3_12350 PF06745 KaiC TH3_12350 PF18073 Rubredoxin metal binding domain TH3_12360 PF00156 Phosphoribosyl transferase domain TH3_12360 PF13537 Glutamine amidotransferase domain TH3_12365 PF00106 short chain dehydrogenase TH3_12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_12375 PF03466 LysR substrate binding domain TH3_12380 PF00248 Aldo/keto reductase family TH3_12385 PF08534 Redoxin TH3_12390 PF01926 50S ribosome-binding GTPase TH3_12390 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TH3_12395 PF13360 PQQ-like domain TH3_12420 PF00268 Ribonucleotide reductase, small chain TH3_12425 PF03477 ATP cone domain TH3_12425 PF00317 Ribonucleotide reductase, all-alpha domain TH3_12425 PF02867 Ribonucleotide reductase, barrel domain TH3_12430 PF01011 PQQ enzyme repeat TH3_12435 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TH3_12440 PF00291 Pyridoxal-phosphate dependent enzyme TH3_12445 PF00011 Hsp20/alpha crystallin family TH3_12450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TH3_12455 PF00118 TCP-1/cpn60 chaperonin family TH3_12460 PF00166 Chaperonin 10 Kd subunit TH3_12465 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TH3_12470 PF00483 Nucleotidyl transferase TH3_12475 PF04321 RmlD substrate binding domain TH3_12480 PF16363 GDP-mannose 4,6 dehydratase TH3_12485 PF01380 SIS domain TH3_12490 PF12804 MobA-like NTP transferase domain TH3_12490 PF00132 Bacterial transferase hexapeptide (six repeats) TH3_12495 PF13419 Haloacid dehalogenase-like hydrolase TH3_12500 PF00920 Dehydratase family TH3_12505 PF02653 Branched-chain amino acid transport system / permease component TH3_12510 PF00005 ABC transporter TH3_12515 PF13407 Periplasmic binding protein domain TH3_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_12520 PF03466 LysR substrate binding domain TH3_12540 PF01641 SelR domain TH3_12555 PF12706 Beta-lactamase superfamily domain TH3_12560 PF00005 ABC transporter TH3_12560 PF08402 TOBE domain TH3_12565 PF00528 Binding-protein-dependent transport system inner membrane component TH3_12570 PF13416 Bacterial extracellular solute-binding protein TH3_12575 PF00455 DeoR C terminal sensor domain TH3_12575 PF08220 DeoR-like helix-turn-helix domain TH3_12640 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_12645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_12645 PF00672 HAMP domain TH3_12645 PF00512 His Kinase A (phospho-acceptor) domain TH3_12650 PF00072 Response regulator receiver domain TH3_12650 PF00486 Transcriptional regulatory protein, C terminal TH3_12665 PF02690 Na+/Pi-cotransporter TH3_12675 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TH3_12675 PF01266 FAD dependent oxidoreductase TH3_12685 PF13537 Glutamine amidotransferase domain TH3_12685 PF00733 Asparagine synthase TH3_12690 PF01037 Lrp/AsnC ligand binding domain TH3_12695 PF00158 Sigma-54 interaction domain TH3_12695 PF02954 Bacterial regulatory protein, Fis family TH3_12695 PF01590 GAF domain TH3_12700 PF00171 Aldehyde dehydrogenase family TH3_12710 PF03601 Conserved hypothetical protein 698 TH3_12715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_12715 PF03466 LysR substrate binding domain TH3_12725 PF01654 Cytochrome bd terminal oxidase subunit I TH3_12730 PF02322 Cytochrome bd terminal oxidase subunit II TH3_12745 PF00155 Aminotransferase class I and II TH3_12755 PF04958 Arginine N-succinyltransferase beta subunit TH3_12760 PF00171 Aldehyde dehydrogenase family TH3_12765 PF04996 Succinylarginine dihydrolase TH3_12770 PF00202 Aminotransferase class-III TH3_12775 PF01037 Lrp/AsnC ligand binding domain TH3_12780 PF01507 Phosphoadenosine phosphosulfate reductase family TH3_12785 PF00009 Elongation factor Tu GTP binding domain TH3_12805 PF01336 OB-fold nucleic acid binding domain TH3_12805 PF02811 PHP domain TH3_12805 PF14579 Helix-hairpin-helix motif TH3_12805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TH3_12805 PF07733 Bacterial DNA polymerase III alpha NTPase domain TH3_12815 PF00528 Binding-protein-dependent transport system inner membrane component TH3_12815 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_12820 PF00528 Binding-protein-dependent transport system inner membrane component TH3_12825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_12830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_12830 PF00005 ABC transporter TH3_12840 PF00005 ABC transporter TH3_12845 PF03861 ANTAR domain TH3_12845 PF00072 Response regulator receiver domain TH3_12850 PF07690 Major Facilitator Superfamily TH3_12860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TH3_12860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TH3_12860 PF04324 BFD-like [2Fe-2S] binding domain TH3_12860 PF18267 Rubredoxin NAD+ reductase C-terminal domain TH3_12860 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_12865 PF00355 Rieske [2Fe-2S] domain TH3_12870 PF01568 Molydopterin dinucleotide binding domain TH3_12870 PF00384 Molybdopterin oxidoreductase TH3_12870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TH3_12870 PF04324 BFD-like [2Fe-2S] binding domain TH3_12875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_12875 PF14824 Sirohaem biosynthesis protein central TH3_12875 PF10414 Sirohaem synthase dimerisation region TH3_12880 PF03466 LysR substrate binding domain TH3_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_12900 PF00155 Aminotransferase class I and II TH3_12905 PF01066 CDP-alcohol phosphatidyltransferase TH3_12920 PF01541 GIY-YIG catalytic domain TH3_12930 PF12833 Helix-turn-helix domain TH3_12940 PF01081 KDPG and KHG aldolase TH3_12945 PF05035 2-keto-3-deoxy-galactonokinase TH3_12955 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TH3_12955 PF00355 Rieske [2Fe-2S] domain TH3_12960 PF00111 2Fe-2S iron-sulfur cluster binding domain TH3_12960 PF00970 Oxidoreductase FAD-binding domain TH3_12960 PF00175 Oxidoreductase NAD-binding domain TH3_12965 PF02028 BCCT, betaine/carnitine/choline family transporter TH3_12970 PF12833 Helix-turn-helix domain TH3_12975 PF01012 Electron transfer flavoprotein domain TH3_12980 PF01012 Electron transfer flavoprotein domain TH3_12980 PF00766 Electron transfer flavoprotein FAD-binding domain TH3_12985 PF01842 ACT domain TH3_12985 PF00551 Formyl transferase TH3_12990 PF08669 Glycine cleavage T-protein C-terminal barrel domain TH3_12990 PF01571 Aminomethyltransferase folate-binding domain TH3_12990 PF16350 FAD dependent oxidoreductase central domain TH3_12990 PF01266 FAD dependent oxidoreductase TH3_12995 PF08240 Alcohol dehydrogenase GroES-like domain TH3_12995 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TH3_13000 PF00440 Bacterial regulatory proteins, tetR family TH3_13000 PF17754 MftR C-terminal domain TH3_13005 PF07715 TonB-dependent Receptor Plug Domain TH3_13005 PF00593 TonB dependent receptor TH3_13010 PF01497 Periplasmic binding protein TH3_13035 PF00593 TonB dependent receptor TH3_13035 PF07715 TonB-dependent Receptor Plug Domain TH3_13040 PF00005 ABC transporter TH3_13045 PF01497 Periplasmic binding protein TH3_13050 PF01032 FecCD transport family TH3_13055 PF11575 FhuF 2Fe-2S C-terminal domain TH3_13055 PF06276 Ferric iron reductase FhuF-like transporter TH3_13065 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) TH3_13070 PF00668 Condensation domain TH3_13070 PF00550 Phosphopantetheine attachment site TH3_13070 PF13193 AMP-binding enzyme C-terminal domain TH3_13070 PF00501 AMP-binding enzyme TH3_13080 PF01554 MatE TH3_13085 PF01053 Cys/Met metabolism PLP-dependent enzyme TH3_13175 PF03743 Bacterial conjugation TrbI-like protein TH3_13185 PF00437 Type II/IV secretion system protein TH3_13190 PF02534 Type IV secretory system Conjugative DNA transfer TH3_13200 PF18818 Metallopeptidase superfamily domain TH3_13200 PF13362 Toprim domain TH3_13200 PF08401 Domain of unknown function (DUF1738) TH3_13210 PF03432 Relaxase/Mobilisation nuclease domain TH3_13210 PF18821 Large polyvalent protein-associated domain 7 TH3_13225 PF18766 SWI2/SNF2 ATPase TH3_13225 PF11867 Domain of unknown function (DUF3387) TH3_13225 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TH3_13240 PF12161 HsdM N-terminal domain TH3_13240 PF02384 N-6 DNA Methylase TH3_13255 PF00271 Helicase conserved C-terminal domain TH3_13275 PF05544 Proline racemase TH3_13280 PF00392 Bacterial regulatory proteins, gntR family TH3_13280 PF07729 FCD domain TH3_13285 PF05544 Proline racemase TH3_13290 PF01266 FAD dependent oxidoreductase TH3_13295 PF00701 Dihydrodipicolinate synthetase family TH3_13300 PF00534 Glycosyl transferases group 1 TH3_13305 PF08240 Alcohol dehydrogenase GroES-like domain TH3_13305 PF00107 Zinc-binding dehydrogenase TH3_13315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TH3_13315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TH3_13320 PF02350 UDP-N-acetylglucosamine 2-epimerase TH3_13330 PF00171 Aldehyde dehydrogenase family TH3_13340 PF01266 FAD dependent oxidoreductase TH3_13340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TH3_13345 PF17912 MalK OB fold domain TH3_13345 PF00005 ABC transporter TH3_13350 PF17912 MalK OB fold domain TH3_13350 PF00005 ABC transporter TH3_13360 PF00528 Binding-protein-dependent transport system inner membrane component TH3_13375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_13375 PF00672 HAMP domain TH3_13390 PF16200 C-terminal region of band_7 TH3_13390 PF01145 SPFH domain / Band 7 family TH3_13395 PF12804 MobA-like NTP transferase domain TH3_13400 PF00893 Small Multidrug Resistance protein TH3_13405 PF01979 Amidohydrolase family TH3_13415 PF00528 Binding-protein-dependent transport system inner membrane component TH3_13420 PF00528 Binding-protein-dependent transport system inner membrane component TH3_13425 PF00005 ABC transporter TH3_13435 PF00202 Aminotransferase class-III TH3_13440 PF00440 Bacterial regulatory proteins, tetR family TH3_13440 PF08362 YcdC-like protein, C-terminal region TH3_13450 PF01546 Peptidase family M20/M25/M40 TH3_13450 PF07687 Peptidase dimerisation domain TH3_13455 PF01180 Dihydroorotate dehydrogenase TH3_13460 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_13460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TH3_13475 PF08402 TOBE domain TH3_13475 PF00005 ABC transporter TH3_13480 PF00528 Binding-protein-dependent transport system inner membrane component TH3_13490 PF00455 DeoR C terminal sensor domain TH3_13490 PF08220 DeoR-like helix-turn-helix domain TH3_13515 PF03600 Citrate transporter TH3_13520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TH3_13520 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TH3_13535 PF08450 SMP-30/Gluconolactonase/LRE-like region TH3_13540 PF00005 ABC transporter TH3_13550 PF01497 Periplasmic binding protein TH3_13555 PF01032 FecCD transport family TH3_13580 PF01370 NAD dependent epimerase/dehydratase family TH3_13600 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_13605 PF00701 Dihydrodipicolinate synthetase family TH3_13615 PF08450 SMP-30/Gluconolactonase/LRE-like region TH3_13620 PF00392 Bacterial regulatory proteins, gntR family TH3_13620 PF07729 FCD domain TH3_13625 PF01263 Aldose 1-epimerase TH3_13630 PF00392 Bacterial regulatory proteins, gntR family TH3_13630 PF07729 FCD domain TH3_13635 PF13419 Haloacid dehalogenase-like hydrolase TH3_13640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TH3_13640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TH3_13645 PF01557 Fumarylacetoacetate (FAA) hydrolase family TH3_13655 PF01738 Dienelactone hydrolase family TH3_13660 PF00920 Dehydratase family TH3_13670 PF13407 Periplasmic binding protein domain TH3_13675 PF02653 Branched-chain amino acid transport system / permease component TH3_13680 PF00005 ABC transporter TH3_13690 PF00480 ROK family TH3_13695 PF03737 Aldolase/RraA TH3_13700 PF00171 Aldehyde dehydrogenase family TH3_13705 PF00701 Dihydrodipicolinate synthetase family TH3_13710 PF00920 Dehydratase family TH3_13735 PF00356 Bacterial regulatory proteins, lacI family TH3_13740 PF02634 FdhD/NarQ family TH3_13750 PF01568 Molydopterin dinucleotide binding domain TH3_13750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TH3_13750 PF00037 4Fe-4S binding domain TH3_13750 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TH3_13750 PF00384 Molybdopterin oxidoreductase TH3_13755 PF00037 4Fe-4S binding domain TH3_13755 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TH3_13755 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TH3_13765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_13765 PF03466 LysR substrate binding domain TH3_13770 PF07690 Major Facilitator Superfamily TH3_13775 PF00512 His Kinase A (phospho-acceptor) domain TH3_13775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_13780 PF02954 Bacterial regulatory protein, Fis family TH3_13780 PF00158 Sigma-54 interaction domain TH3_13780 PF00072 Response regulator receiver domain TH3_13785 PF07715 TonB-dependent Receptor Plug Domain TH3_13795 PF06472 ABC transporter transmembrane region 2 TH3_13795 PF00005 ABC transporter TH3_13800 PF00171 Aldehyde dehydrogenase family TH3_13810 PF00109 Beta-ketoacyl synthase, N-terminal domain TH3_13810 PF02801 Beta-ketoacyl synthase, C-terminal domain TH3_13810 PF00698 Acyl transferase domain TH3_13810 PF00550 Phosphopantetheine attachment site TH3_13810 PF16197 Ketoacyl-synthetase C-terminal extension TH3_13810 PF00668 Condensation domain TH3_13815 PF00975 Thioesterase domain TH3_13815 PF13193 AMP-binding enzyme C-terminal domain TH3_13815 PF00550 Phosphopantetheine attachment site TH3_13815 PF00668 Condensation domain TH3_13815 PF00501 AMP-binding enzyme TH3_13820 PF13193 AMP-binding enzyme C-terminal domain TH3_13820 PF00501 AMP-binding enzyme TH3_13820 PF00668 Condensation domain TH3_13820 PF00550 Phosphopantetheine attachment site TH3_13820 PF00975 Thioesterase domain TH3_13870 PF09084 NMT1/THI5 like TH3_13875 PF00291 Pyridoxal-phosphate dependent enzyme TH3_13880 PF00005 ABC transporter TH3_13880 PF00664 ABC transporter transmembrane region TH3_13885 PF00005 ABC transporter TH3_13885 PF00664 ABC transporter transmembrane region TH3_13890 PF00975 Thioesterase domain TH3_13915 PF00550 Phosphopantetheine attachment site TH3_13920 PF00550 Phosphopantetheine attachment site TH3_13930 PF07977 FabA-like domain TH3_13940 PF00221 Aromatic amino acid lyase TH3_13960 PF04820 Tryptophan halogenase TH3_13970 PF00109 Beta-ketoacyl synthase, N-terminal domain TH3_13970 PF02801 Beta-ketoacyl synthase, C-terminal domain TH3_13985 PF00109 Beta-ketoacyl synthase, N-terminal domain TH3_13985 PF02801 Beta-ketoacyl synthase, C-terminal domain TH3_14000 PF00005 ABC transporter TH3_14005 PF12399 Branched-chain amino acid ATP-binding cassette transporter TH3_14005 PF00005 ABC transporter TH3_14015 PF02653 Branched-chain amino acid transport system / permease component TH3_14025 PF03301 Tryptophan 2,3-dioxygenase TH3_14030 PF00266 Aminotransferase class-V TH3_14035 PF00501 AMP-binding enzyme TH3_14035 PF13193 AMP-binding enzyme C-terminal domain TH3_14040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_14040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_14040 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_14045 PF00378 Enoyl-CoA hydratase/isomerase TH3_14055 PF00106 short chain dehydrogenase TH3_14060 PF01494 FAD binding domain TH3_14070 PF00378 Enoyl-CoA hydratase/isomerase TH3_14070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TH3_14070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TH3_14075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TH3_14075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TH3_14080 PF04962 KduI/IolB family TH3_14085 PF01261 Xylose isomerase-like TIM barrel TH3_14090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TH3_14090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TH3_14090 PF00205 Thiamine pyrophosphate enzyme, central domain TH3_14095 PF00294 pfkB family carbohydrate kinase TH3_14100 PF00005 ABC transporter TH3_14105 PF02653 Branched-chain amino acid transport system / permease component TH3_14120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TH3_14120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TH3_14130 PF04962 KduI/IolB family TH3_14135 PF00356 Bacterial regulatory proteins, lacI family TH3_14145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_14200 PF03743 Bacterial conjugation TrbI-like protein TH3_14225 PF03135 CagE, TrbE, VirB family, component of type IV transporter system TH3_14240 PF00437 Type II/IV secretion system protein TH3_14255 PF00589 Phage integrase family TH3_14255 PF02899 Phage integrase, N-terminal SAM-like domain TH3_14270 PF02534 Type IV secretory system Conjugative DNA transfer TH3_14295 PF00528 Binding-protein-dependent transport system inner membrane component TH3_14300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_14305 PF03069 Acetamidase/Formamidase family TH3_14310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_14310 PF00005 ABC transporter TH3_14320 PF01464 Transglycosylase SLT domain TH3_14325 PF10502 Signal peptidase, peptidase S26 TH3_14345 PF13426 PAS domain TH3_14345 PF08447 PAS fold TH3_14345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_14375 PF00871 Acetokinase family TH3_14385 PF01515 Phosphate acetyl/butaryl transferase TH3_14390 PF11339 Protein of unknown function (DUF3141) TH3_14395 PF00106 short chain dehydrogenase TH3_14410 PF00005 ABC transporter TH3_14415 PF13533 Biotin-lipoyl like TH3_14420 PF02321 Outer membrane efflux protein TH3_14480 PF01527 Transposase TH3_14485 PF01464 Transglycosylase SLT domain TH3_14485 PF01551 Peptidase family M23 TH3_14485 PF10145 Phage-related minor tail protein TH3_14490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_14490 PF03466 LysR substrate binding domain TH3_14495 PF00497 Bacterial extracellular solute-binding proteins, family 3 TH3_14500 PF00528 Binding-protein-dependent transport system inner membrane component TH3_14505 PF00528 Binding-protein-dependent transport system inner membrane component TH3_14510 PF00005 ABC transporter TH3_14520 PF00664 ABC transporter transmembrane region TH3_14520 PF00005 ABC transporter TH3_14525 PF01491 Frataxin-like domain TH3_14530 PF01197 Ribosomal protein L31 TH3_14535 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_14550 PF00107 Zinc-binding dehydrogenase TH3_14550 PF00698 Acyl transferase domain TH3_14550 PF08240 Alcohol dehydrogenase GroES-like domain TH3_14550 PF16197 Ketoacyl-synthetase C-terminal extension TH3_14550 PF00109 Beta-ketoacyl synthase, N-terminal domain TH3_14550 PF00550 Phosphopantetheine attachment site TH3_14550 PF14765 Polyketide synthase dehydratase TH3_14550 PF08659 KR domain TH3_14550 PF02801 Beta-ketoacyl synthase, C-terminal domain TH3_14565 PF08220 DeoR-like helix-turn-helix domain TH3_14565 PF00455 DeoR C terminal sensor domain TH3_14570 PF03466 LysR substrate binding domain TH3_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_14600 PF13193 AMP-binding enzyme C-terminal domain TH3_14600 PF16177 Acetyl-coenzyme A synthetase N-terminus TH3_14600 PF00501 AMP-binding enzyme TH3_14610 PF02441 Flavoprotein TH3_14620 PF00365 Phosphofructokinase TH3_14635 PF00731 AIR carboxylase TH3_14640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TH3_14640 PF02222 ATP-grasp domain TH3_14655 PF01327 Polypeptide deformylase TH3_14660 PF00529 HlyD membrane-fusion protein of T1SS TH3_14660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TH3_14670 PF01165 Ribosomal protein S21 TH3_14675 PF03553 Na+/H+ antiporter family TH3_14675 PF13726 Na+-H+ antiporter family TH3_14690 PF02233 NAD(P) transhydrogenase beta subunit TH3_14695 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TH3_14700 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TH3_14700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TH3_14705 PF03109 ABC1 family TH3_14720 PF00501 AMP-binding enzyme TH3_14735 PF10431 C-terminal, D2-small domain, of ClpB protein TH3_14735 PF02861 Clp amino terminal domain, pathogenicity island component TH3_14735 PF17871 AAA lid domain TH3_14735 PF07724 AAA domain (Cdc48 subfamily) TH3_14735 PF00004 ATPase family associated with various cellular activities (AAA) TH3_14755 PF17827 PrmC N-terminal domain TH3_14755 PF05175 Methyltransferase small domain TH3_14760 PF00472 RF-1 domain TH3_14760 PF03462 PCRF domain TH3_14765 PF01488 Shikimate / quinate 5-dehydrogenase TH3_14765 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TH3_14765 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TH3_14770 PF13393 Histidyl-tRNA synthetase TH3_14770 PF03129 Anticodon binding domain TH3_14775 PF04551 GcpE protein TH3_14785 PF01590 GAF domain TH3_14785 PF00391 PEP-utilising enzyme, mobile domain TH3_14785 PF02896 PEP-utilising enzyme, TIM barrel domain TH3_14785 PF05524 PEP-utilising enzyme, N-terminal TH3_14790 PF03060 Nitronate monooxygenase TH3_14795 PF13840 ACT domain TH3_14795 PF01842 ACT domain TH3_14795 PF00696 Amino acid kinase family TH3_14810 PF03848 Tellurite resistance protein TehB TH3_14820 PF00245 Alkaline phosphatase TH3_14830 PF02687 FtsX-like permease family TH3_14830 PF12704 MacB-like periplasmic core domain TH3_14830 PF00005 ABC transporter TH3_14850 PF00795 Carbon-nitrogen hydrolase TH3_14855 PF00392 Bacterial regulatory proteins, gntR family TH3_14855 PF07729 FCD domain TH3_14870 PF00462 Glutaredoxin TH3_14875 PF00156 Phosphoribosyl transferase domain TH3_14880 PF03466 LysR substrate binding domain TH3_14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_14885 PF02798 Glutathione S-transferase, N-terminal domain TH3_14890 PF00042 Globin TH3_14890 PF00970 Oxidoreductase FAD-binding domain TH3_14890 PF00175 Oxidoreductase NAD-binding domain TH3_14895 PF08241 Methyltransferase domain TH3_14900 PF17746 SfsA N-terminal OB domain TH3_14900 PF03749 Sugar fermentation stimulation protein RE domain TH3_14905 PF00557 Metallopeptidase family M24 TH3_14910 PF04002 RadC-like JAB domain TH3_14925 PF03466 LysR substrate binding domain TH3_14925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_14935 PF12833 Helix-turn-helix domain TH3_14935 PF12852 Cupin TH3_14950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_14955 PF00528 Binding-protein-dependent transport system inner membrane component TH3_14960 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_14960 PF00528 Binding-protein-dependent transport system inner membrane component TH3_14965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_14965 PF00005 ABC transporter TH3_14970 PF00005 ABC transporter TH3_14970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_14975 PF13180 PDZ domain TH3_14995 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA TH3_15000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TH3_15000 PF02805 Metal binding domain of Ada TH3_15000 PF12833 Helix-turn-helix domain TH3_15000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TH3_15015 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TH3_15015 PF00753 Metallo-beta-lactamase superfamily TH3_15015 PF10996 Beta-Casp domain TH3_15020 PF03466 LysR substrate binding domain TH3_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_15025 PF10397 Adenylosuccinate lyase C-terminus TH3_15025 PF00206 Lyase TH3_15035 PF03466 LysR substrate binding domain TH3_15035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_15045 PF06418 CTP synthase N-terminus TH3_15045 PF00117 Glutamine amidotransferase class-I TH3_15050 PF00196 Bacterial regulatory proteins, luxR family TH3_15050 PF00072 Response regulator receiver domain TH3_15065 PF01259 SAICAR synthetase TH3_15070 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TH3_15080 PF00586 AIR synthase related protein, N-terminal domain TH3_15080 PF02769 AIR synthase related protein, C-terminal domain TH3_15080 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TH3_15100 PF10609 NUBPL iron-transfer P-loop NTPase TH3_15105 PF01145 SPFH domain / Band 7 family TH3_15120 PF13180 PDZ domain TH3_15150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TH3_15150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TH3_15150 PF00205 Thiamine pyrophosphate enzyme, central domain TH3_15155 PF10369 Small subunit of acetolactate synthase TH3_15160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TH3_15160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TH3_15165 PF04227 Indigoidine synthase A like protein TH3_15175 PF00155 Aminotransferase class I and II TH3_15175 PF00392 Bacterial regulatory proteins, gntR family TH3_15180 PF03441 FAD binding domain of DNA photolyase TH3_15180 PF00875 DNA photolyase TH3_15195 PF03884 DNA gyrase inhibitor YacG TH3_15200 PF10150 Ribonuclease E/G family TH3_15200 PF12111 Polyribonucleotide phosphorylase C terminal TH3_15200 PF00575 S1 RNA binding domain TH3_15205 PF02545 Maf-like protein TH3_15210 PF01176 Translation initiation factor 1A / IF-1 TH3_15220 PF01451 Low molecular weight phosphotyrosine protein phosphatase TH3_15225 PF06793 Uncharacterised protein family (UPF0262) TH3_15230 PF00815 Histidinol dehydrogenase TH3_15235 PF01634 ATP phosphoribosyltransferase TH3_15240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TH3_15245 PF00692 dUTPase TH3_15255 PF01370 NAD dependent epimerase/dehydratase family TH3_15265 PF00072 Response regulator receiver domain TH3_15265 PF00196 Bacterial regulatory proteins, luxR family TH3_15280 PF00512 His Kinase A (phospho-acceptor) domain TH3_15280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_15280 PF13188 PAS domain TH3_15280 PF00072 Response regulator receiver domain TH3_15280 PF08448 PAS fold TH3_15285 PF00107 Zinc-binding dehydrogenase TH3_15290 PF06803 Protein of unknown function (DUF1232) TH3_15315 PF01571 Aminomethyltransferase folate-binding domain TH3_15320 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TH3_15320 PF02896 PEP-utilising enzyme, TIM barrel domain TH3_15320 PF00391 PEP-utilising enzyme, mobile domain TH3_15325 PF02092 Glycyl-tRNA synthetase beta subunit TH3_15325 PF05746 DALR anticodon binding domain TH3_15330 PF02091 Glycyl-tRNA synthetase alpha subunit TH3_15340 PF17827 PrmC N-terminal domain TH3_15340 PF13847 Methyltransferase domain TH3_15350 PF00348 Polyprenyl synthetase TH3_15355 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_15365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_15375 PF00034 Cytochrome c TH3_15385 PF03781 Sulfatase-modifying factor enzyme 1 TH3_15395 PF00582 Universal stress protein family TH3_15405 PF16868 NMT1-like family TH3_15410 PF05853 beta-keto acid cleavage enzyme TH3_15415 PF00202 Aminotransferase class-III TH3_15430 PF01627 Hpt domain TH3_15430 PF00672 HAMP domain TH3_15430 PF00072 Response regulator receiver domain TH3_15430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_15430 PF00512 His Kinase A (phospho-acceptor) domain TH3_15430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TH3_15435 PF00733 Asparagine synthase TH3_15435 PF13537 Glutamine amidotransferase domain TH3_15445 PF00149 Calcineurin-like phosphoesterase TH3_15450 PF08331 Domain of unknown function (DUF1730) TH3_15455 PF07715 TonB-dependent Receptor Plug Domain TH3_15455 PF00593 TonB dependent receptor TH3_15470 PF14489 QueF-like protein TH3_15475 PF01702 Queuine tRNA-ribosyltransferase TH3_15480 PF02547 Queuosine biosynthesis protein TH3_15485 PF02592 Putative vitamin uptake transporter TH3_15490 PF01384 Phosphate transporter family TH3_15545 PF03466 LysR substrate binding domain TH3_15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_15565 PF02913 FAD linked oxidases, C-terminal domain TH3_15565 PF01565 FAD binding domain TH3_15570 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TH3_15575 PF03466 LysR substrate binding domain TH3_15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_15590 PF02653 Branched-chain amino acid transport system / permease component TH3_15605 PF09857 Putative toxin of bacterial toxin-antitoxin pair TH3_15630 PF01645 Conserved region in glutamate synthase TH3_15645 PF01968 Hydantoinase/oxoprolinase TH3_15645 PF05378 Hydantoinase/oxoprolinase N-terminal region TH3_15650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_15660 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_15665 PF00106 short chain dehydrogenase TH3_15680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_15680 PF02743 Cache domain TH3_15680 PF00672 HAMP domain TH3_15685 PF00672 HAMP domain TH3_15685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_15690 PF00226 DnaJ domain TH3_15690 PF05099 Tellurite resistance protein TerB TH3_15705 PF01510 N-acetylmuramoyl-L-alanine amidase TH3_15720 PF00857 Isochorismatase family TH3_15725 PF12833 Helix-turn-helix domain TH3_15725 PF01965 DJ-1/PfpI family TH3_15735 PF01544 CorA-like Mg2+ transporter protein TH3_15750 PF02381 MraZ protein, putative antitoxin-like TH3_15755 PF01795 MraW methylase family TH3_15765 PF00905 Penicillin binding protein transpeptidase domain TH3_15765 PF03717 Penicillin-binding Protein dimerisation domain TH3_15770 PF08245 Mur ligase middle domain TH3_15770 PF02875 Mur ligase family, glutamate ligase domain TH3_15770 PF01225 Mur ligase family, catalytic domain TH3_15775 PF01225 Mur ligase family, catalytic domain TH3_15775 PF08245 Mur ligase middle domain TH3_15775 PF02875 Mur ligase family, glutamate ligase domain TH3_15780 PF00953 Glycosyl transferase family 4 TH3_15785 PF08245 Mur ligase middle domain TH3_15790 PF01098 Cell cycle protein TH3_15800 PF05973 Phage derived protein Gp49-like (DUF891) TH3_15820 PF04101 Glycosyltransferase family 28 C-terminal domain TH3_15820 PF03033 Glycosyltransferase family 28 N-terminal domain TH3_15825 PF02875 Mur ligase family, glutamate ligase domain TH3_15825 PF01225 Mur ligase family, catalytic domain TH3_15825 PF08245 Mur ligase middle domain TH3_15830 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TH3_15830 PF01565 FAD binding domain TH3_15835 PF01820 D-ala D-ala ligase N-terminus TH3_15835 PF07478 D-ala D-ala ligase C-terminus TH3_15840 PF03799 Cell division protein FtsQ TH3_15840 PF08478 POTRA domain, FtsQ-type TH3_15850 PF17912 MalK OB fold domain TH3_15850 PF00005 ABC transporter TH3_15855 PF00528 Binding-protein-dependent transport system inner membrane component TH3_15865 PF01547 Bacterial extracellular solute-binding protein TH3_15880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_15880 PF00005 ABC transporter TH3_15885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_15885 PF00005 ABC transporter TH3_15890 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_15890 PF00528 Binding-protein-dependent transport system inner membrane component TH3_15895 PF00528 Binding-protein-dependent transport system inner membrane component TH3_15900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_15905 PF01614 Bacterial transcriptional regulator TH3_15905 PF09339 IclR helix-turn-helix domain TH3_15910 PF02491 SHS2 domain inserted in FTSA TH3_15915 PF12327 FtsZ family, C-terminal domain TH3_15915 PF00091 Tubulin/FtsZ family, GTPase domain TH3_15920 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TH3_15925 PF13525 Outer membrane lipoprotein TH3_15930 PF02463 RecF/RecN/SMC N terminal domain TH3_15935 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TH3_15935 PF03120 NAD-dependent DNA ligase OB-fold domain TH3_15935 PF01653 NAD-dependent DNA ligase adenylation domain TH3_15935 PF12826 Helix-hairpin-helix motif TH3_15935 PF00533 BRCA1 C Terminus (BRCT) domain TH3_15955 PF00892 EamA-like transporter family TH3_15960 PF03466 LysR substrate binding domain TH3_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_15965 PF00248 Aldo/keto reductase family TH3_15970 PF01321 Creatinase/Prolidase N-terminal domain TH3_15970 PF00557 Metallopeptidase family M24 TH3_15985 PF01925 Sulfite exporter TauE/SafE TH3_16000 PF00580 UvrD/REP helicase N-terminal domain TH3_16000 PF13361 UvrD-like helicase C-terminal domain TH3_16025 PF00654 Voltage gated chloride channel TH3_16030 PF07690 Major Facilitator Superfamily TH3_16035 PF00809 Pterin binding enzyme TH3_16035 PF02607 B12 binding domain TH3_16035 PF02574 Homocysteine S-methyltransferase TH3_16035 PF02965 Vitamin B12 dependent methionine synthase, activation domain TH3_16035 PF02310 B12 binding domain TH3_16040 PF02574 Homocysteine S-methyltransferase TH3_16040 PF02310 B12 binding domain TH3_16040 PF02965 Vitamin B12 dependent methionine synthase, activation domain TH3_16040 PF00809 Pterin binding enzyme TH3_16040 PF02607 B12 binding domain TH3_16045 PF02219 Methylenetetrahydrofolate reductase TH3_16050 PF01209 ubiE/COQ5 methyltransferase family TH3_16055 PF04333 MlaA lipoprotein TH3_16065 PF12848 ABC transporter TH3_16065 PF00005 ABC transporter TH3_16075 PF00474 Sodium:solute symporter family TH3_16100 PF00528 Binding-protein-dependent transport system inner membrane component TH3_16105 PF00005 ABC transporter TH3_16105 PF03459 TOBE domain TH3_16115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TH3_16115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_16120 PF01266 FAD dependent oxidoreductase TH3_16130 PF01571 Aminomethyltransferase folate-binding domain TH3_16130 PF08669 Glycine cleavage T-protein C-terminal barrel domain TH3_16130 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_16130 PF17806 Sarcosine oxidase A3 domain TH3_16140 PF13545 Crp-like helix-turn-helix domain TH3_16140 PF00027 Cyclic nucleotide-binding domain TH3_16145 PF00027 Cyclic nucleotide-binding domain TH3_16145 PF00520 Ion transport protein TH3_16160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TH3_16165 PF14824 Sirohaem biosynthesis protein central TH3_16165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_16165 PF10414 Sirohaem synthase dimerisation region TH3_16170 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TH3_16180 PF17805 AsnC-like ligand binding domain TH3_16185 PF17805 AsnC-like ligand binding domain TH3_16190 PF13404 AsnC-type helix-turn-helix domain TH3_16190 PF17805 AsnC-like ligand binding domain TH3_16195 PF17805 AsnC-like ligand binding domain TH3_16215 PF00510 Cytochrome c oxidase subunit III TH3_16220 PF00092 von Willebrand factor type A domain TH3_16225 PF08406 CbbQ/NirQ/NorQ C-terminal TH3_16225 PF07728 AAA domain (dynein-related subfamily) TH3_16230 PF00115 Cytochrome C and Quinol oxidase polypeptide I TH3_16235 PF00034 Cytochrome c TH3_16240 PF04405 Domain of Unknown function (DUF542) TH3_16240 PF01814 Hemerythrin HHE cation binding domain TH3_16270 PF12679 ABC-2 family transporter protein TH3_16275 PF00005 ABC transporter TH3_16285 PF13473 Cupredoxin-like domain TH3_16285 PF18793 Nitrous oxide reductase propeller repeat 2 TH3_16285 PF18764 Nitrous oxide reductase propeller repeat TH3_16290 PF12801 4Fe-4S binding domain TH3_16290 PF04205 FMN-binding domain TH3_16295 PF00072 Response regulator receiver domain TH3_16295 PF00486 Transcriptional regulatory protein, C terminal TH3_16300 PF13492 GAF domain TH3_16300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_16300 PF00512 His Kinase A (phospho-acceptor) domain TH3_16300 PF02702 Osmosensitive K+ channel His kinase sensor domain TH3_16300 PF13493 Domain of unknown function (DUF4118) TH3_16305 PF02669 K+-transporting ATPase, c chain TH3_16315 PF03814 Potassium-transporting ATPase A subunit TH3_16320 PF00140 Sigma-70 factor, region 1.2 TH3_16320 PF04539 Sigma-70 region 3 TH3_16320 PF04545 Sigma-70, region 4 TH3_16320 PF03979 Sigma-70 factor, region 1.1 TH3_16320 PF04546 Sigma-70, non-essential region TH3_16320 PF04542 Sigma-70 region 2 TH3_16325 PF08275 DNA primase catalytic core, N-terminal domain TH3_16325 PF10410 DnaB-helicase binding domain of primase TH3_16325 PF01807 CHC2 zinc finger TH3_16325 PF13662 Toprim domain TH3_16325 PF08278 DNA primase DnaG DnaB-binding TH3_16335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TH3_16335 PF00117 Glutamine amidotransferase class-I TH3_16340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TH3_16340 PF02142 MGS-like domain TH3_16340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TH3_16345 PF03449 Transcription elongation factor, N-terminal TH3_16345 PF01272 Transcription elongation factor, GreA/GreB, C-term TH3_16355 PF01037 Lrp/AsnC ligand binding domain TH3_16360 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_16365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_16365 PF03466 LysR substrate binding domain TH3_16375 PF02743 Cache domain TH3_16375 PF00672 HAMP domain TH3_16375 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_16380 PF00679 Elongation factor G C-terminus TH3_16380 PF00009 Elongation factor Tu GTP binding domain TH3_16380 PF03764 Elongation factor G, domain IV TH3_16380 PF14492 Elongation Factor G, domain II TH3_16385 PF00210 Ferritin-like domain TH3_16395 PF01425 Amidase TH3_16405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_16420 PF07286 Protein of unknown function (DUF1445) TH3_16425 PF03466 LysR substrate binding domain TH3_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_16430 PF00174 Oxidoreductase molybdopterin binding domain TH3_16440 PF00271 Helicase conserved C-terminal domain TH3_16440 PF17757 UvrB interaction domain TH3_16440 PF04851 Type III restriction enzyme, res subunit TH3_16440 PF12344 Ultra-violet resistance protein B TH3_16440 PF02151 UvrB/uvrC motif TH3_16455 PF02627 Carboxymuconolactone decarboxylase family TH3_16460 PF00578 AhpC/TSA family TH3_16465 PF03466 LysR substrate binding domain TH3_16465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_16475 PF00107 Zinc-binding dehydrogenase TH3_16475 PF08240 Alcohol dehydrogenase GroES-like domain TH3_16480 PF06796 Periplasmic nitrate reductase protein NapE TH3_16495 PF01568 Molydopterin dinucleotide binding domain TH3_16495 PF00384 Molybdopterin oxidoreductase TH3_16495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TH3_16500 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) TH3_16505 PF03264 NapC/NirT cytochrome c family, N-terminal region TH3_16510 PF10649 Protein of unknown function (DUF2478) TH3_16510 PF00005 ABC transporter TH3_16510 PF03459 TOBE domain TH3_16515 PF00958 GMP synthase C terminal domain TH3_16515 PF00117 Glutamine amidotransferase class-I TH3_16520 PF01926 50S ribosome-binding GTPase TH3_16520 PF06071 Protein of unknown function (DUF933) TH3_16525 PF01195 Peptidyl-tRNA hydrolase TH3_16530 PF14693 Ribosomal protein TL5, C-terminal domain TH3_16530 PF01386 Ribosomal L25p family TH3_16535 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TH3_16535 PF14572 Phosphoribosyl synthetase-associated domain TH3_16555 PF01790 Prolipoprotein diacylglyceryl transferase TH3_16560 PF01370 NAD dependent epimerase/dehydratase family TH3_16575 PF14748 Pyrroline-5-carboxylate reductase dimerisation TH3_16575 PF03807 NADP oxidoreductase coenzyme F420-dependent TH3_16590 PF01588 Putative tRNA binding domain TH3_16595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_16595 PF08447 PAS fold TH3_16595 PF13426 PAS domain TH3_16600 PF00175 Oxidoreductase NAD-binding domain TH3_16600 PF00970 Oxidoreductase FAD-binding domain TH3_16615 PF00512 His Kinase A (phospho-acceptor) domain TH3_16615 PF00672 HAMP domain TH3_16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_16620 PF00072 Response regulator receiver domain TH3_16620 PF00486 Transcriptional regulatory protein, C terminal TH3_16625 PF12802 MarR family TH3_16630 PF01063 Amino-transferase class IV TH3_16635 PF00043 Glutathione S-transferase, C-terminal domain TH3_16635 PF13417 Glutathione S-transferase, N-terminal domain TH3_16640 PF12411 Choline sulfatase enzyme C terminal TH3_16640 PF00884 Sulfatase TH3_16645 PF03466 LysR substrate binding domain TH3_16645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_16655 PF01218 Coproporphyrinogen III oxidase TH3_16660 PF00588 SpoU rRNA Methylase family TH3_16665 PF00355 Rieske [2Fe-2S] domain TH3_16665 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TH3_16670 PF00033 Cytochrome b/b6/petB TH3_16670 PF00032 Cytochrome b(C-terminal)/b6/petD TH3_16675 PF02167 Cytochrome C1 family TH3_16685 PF00753 Metallo-beta-lactamase superfamily TH3_16685 PF16123 Hydroxyacylglutathione hydrolase C-terminus TH3_16690 PF00483 Nucleotidyl transferase TH3_16690 PF01050 Mannose-6-phosphate isomerase TH3_16700 PF13407 Periplasmic binding protein domain TH3_16705 PF02653 Branched-chain amino acid transport system / permease component TH3_16710 PF00005 ABC transporter TH3_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_16725 PF03466 LysR substrate binding domain TH3_16740 PF00108 Thiolase, N-terminal domain TH3_16740 PF02803 Thiolase, C-terminal domain TH3_16750 PF00394 Multicopper oxidase TH3_16750 PF07732 Multicopper oxidase TH3_16750 PF07731 Multicopper oxidase TH3_16760 PF01037 Lrp/AsnC ligand binding domain TH3_16780 PF05233 PHB accumulation regulatory domain TH3_16780 PF07879 PHB/PHA accumulation regulator DNA-binding domain TH3_16790 PF01381 Helix-turn-helix TH3_16800 PF00696 Amino acid kinase family TH3_16800 PF01472 PUA domain TH3_16805 PF01018 GTP1/OBG TH3_16805 PF01926 50S ribosome-binding GTPase TH3_16810 PF01016 Ribosomal L27 protein TH3_16815 PF00829 Ribosomal prokaryotic L21 protein TH3_16820 PF02742 Iron dependent repressor, metal binding and dimerisation domain TH3_16820 PF01325 Iron dependent repressor, N-terminal DNA binding domain TH3_16825 PF01297 Zinc-uptake complex component A periplasmic TH3_16830 PF00005 ABC transporter TH3_16835 PF00950 ABC 3 transport family TH3_16840 PF00950 ABC 3 transport family TH3_16860 PF01618 MotA/TolQ/ExbB proton channel family TH3_16865 PF13677 Membrane MotB of proton-channel complex MotA/MotB TH3_16865 PF00691 OmpA family TH3_16875 PF01119 DNA mismatch repair protein, C-terminal domain TH3_16875 PF08676 MutL C terminal dimerisation domain TH3_16880 PF05193 Peptidase M16 inactive domain TH3_16885 PF00675 Insulinase (Peptidase family M16) TH3_16885 PF05193 Peptidase M16 inactive domain TH3_16895 PF01252 Signal peptidase (SPase) II TH3_16900 PF08264 Anticodon-binding domain of tRNA TH3_16900 PF00133 tRNA synthetases class I (I, L, M and V) TH3_16905 PF01687 Riboflavin kinase TH3_16905 PF06574 FAD synthetase TH3_16910 PF01575 MaoC like domain TH3_16915 PF01209 ubiE/COQ5 methyltransferase family TH3_16965 PF00149 Calcineurin-like phosphoesterase TH3_16965 PF02872 5'-nucleotidase, C-terminal domain TH3_16975 PF12833 Helix-turn-helix domain TH3_16975 PF02311 AraC-like ligand binding domain TH3_16990 PF02558 Ketopantoate reductase PanE/ApbA TH3_16990 PF08546 Ketopantoate reductase PanE/ApbA C terminal TH3_16995 PF02515 CoA-transferase family III TH3_17000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_17000 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_17000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_17005 PF03466 LysR substrate binding domain TH3_17020 PF04209 homogentisate 1,2-dioxygenase TH3_17035 PF00561 alpha/beta hydrolase fold TH3_17060 PF11953 Domain of unknown function (DUF3470) TH3_17060 PF00037 4Fe-4S binding domain TH3_17065 PF03707 Bacterial signalling protein N terminal repeat TH3_17065 PF00990 Diguanylate cyclase, GGDEF domain TH3_17065 PF00563 EAL domain TH3_17070 PF01627 Hpt domain TH3_17070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_17070 PF00072 Response regulator receiver domain TH3_17070 PF00497 Bacterial extracellular solute-binding proteins, family 3 TH3_17070 PF00989 PAS fold TH3_17070 PF00512 His Kinase A (phospho-acceptor) domain TH3_17080 PF00512 His Kinase A (phospho-acceptor) domain TH3_17080 PF01590 GAF domain TH3_17080 PF08446 PAS fold TH3_17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_17080 PF00360 Phytochrome region TH3_17090 PF04304 Protein of unknown function (DUF454) TH3_17095 PF00472 RF-1 domain TH3_17100 PF00440 Bacterial regulatory proteins, tetR family TH3_17110 PF01351 Ribonuclease HII TH3_17115 PF13302 Acetyltransferase (GNAT) domain TH3_17120 PF03334 Na+/H+ antiporter subunit TH3_17125 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TH3_17130 PF01899 Na+/H+ ion antiporter subunit TH3_17135 PF00361 Proton-conducting membrane transporter TH3_17140 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TH3_17145 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TH3_17145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TH3_17145 PF13244 Domain of unknown function (DUF4040) TH3_17145 PF00361 Proton-conducting membrane transporter TH3_17160 PF00501 AMP-binding enzyme TH3_17160 PF14535 AMP-binding enzyme C-terminal domain TH3_17165 PF00005 ABC transporter TH3_17180 PF02653 Branched-chain amino acid transport system / permease component TH3_17185 PF00501 AMP-binding enzyme TH3_17190 PF12399 Branched-chain amino acid ATP-binding cassette transporter TH3_17190 PF00005 ABC transporter TH3_17195 PF00330 Aconitase family (aconitate hydratase) TH3_17195 PF00694 Aconitase C-terminal domain TH3_17200 PF00563 EAL domain TH3_17200 PF03707 Bacterial signalling protein N terminal repeat TH3_17200 PF00990 Diguanylate cyclase, GGDEF domain TH3_17205 PF00209 Sodium:neurotransmitter symporter family TH3_17215 PF00005 ABC transporter TH3_17220 PF03379 CcmB protein TH3_17225 PF01578 Cytochrome C assembly protein TH3_17235 PF03100 CcmE TH3_17240 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TH3_17240 PF01578 Cytochrome C assembly protein TH3_17245 PF08534 Redoxin TH3_17250 PF03918 Cytochrome C biogenesis protein TH3_17255 PF03918 Cytochrome C biogenesis protein TH3_17260 PF08220 DeoR-like helix-turn-helix domain TH3_17260 PF00455 DeoR C terminal sensor domain TH3_17265 PF01791 DeoC/LacD family aldolase TH3_17270 PF13407 Periplasmic binding protein domain TH3_17275 PF00005 ABC transporter TH3_17280 PF02653 Branched-chain amino acid transport system / permease component TH3_17285 PF02653 Branched-chain amino acid transport system / permease component TH3_17295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TH3_17295 PF00294 pfkB family carbohydrate kinase TH3_17305 PF10145 Phage-related minor tail protein TH3_17305 PF01551 Peptidase family M23 TH3_17305 PF01464 Transglycosylase SLT domain TH3_17310 PF03167 Uracil DNA glycosylase superfamily TH3_17320 PF00171 Aldehyde dehydrogenase family TH3_17325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TH3_17325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TH3_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_17330 PF03466 LysR substrate binding domain TH3_17345 PF07687 Peptidase dimerisation domain TH3_17345 PF01546 Peptidase family M20/M25/M40 TH3_17360 PF08544 GHMP kinases C terminal TH3_17360 PF00288 GHMP kinases N terminal domain TH3_17370 PF09669 Phage regulatory protein Rha (Phage_pRha) TH3_17370 PF10549 ORF11CD3 domain TH3_17385 PF00075 RNase H TH3_17440 PF03932 CutC family TH3_17445 PF00480 ROK family TH3_17450 PF00675 Insulinase (Peptidase family M16) TH3_17450 PF05193 Peptidase M16 inactive domain TH3_17455 PF14821 Threonine synthase N terminus TH3_17455 PF00291 Pyridoxal-phosphate dependent enzyme TH3_17460 PF00027 Cyclic nucleotide-binding domain TH3_17460 PF13545 Crp-like helix-turn-helix domain TH3_17465 PF02074 Carboxypeptidase Taq (M32) metallopeptidase TH3_17470 PF02104 SURF1 family TH3_17480 PF00510 Cytochrome c oxidase subunit III TH3_17485 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 TH3_17490 PF01040 UbiA prenyltransferase family TH3_17495 PF00115 Cytochrome C and Quinol oxidase polypeptide I TH3_17500 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TH3_17500 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TH3_17510 PF02622 Uncharacterized ACR, COG1678 TH3_17515 PF02683 Cytochrome C biogenesis protein transmembrane region TH3_17515 PF11412 Disulphide bond corrector protein DsbC TH3_17525 PF00462 Glutaredoxin TH3_17525 PF08534 Redoxin TH3_17540 PF00266 Aminotransferase class-V TH3_17545 PF02347 Glycine cleavage system P-protein TH3_17550 PF01597 Glycine cleavage H-protein TH3_17555 PF08669 Glycine cleavage T-protein C-terminal barrel domain TH3_17555 PF01571 Aminomethyltransferase folate-binding domain TH3_17570 PF02401 LytB protein TH3_17575 PF01636 Phosphotransferase enzyme family TH3_17580 PF00075 RNase H TH3_17585 PF00990 Diguanylate cyclase, GGDEF domain TH3_17585 PF00563 EAL domain TH3_17585 PF03707 Bacterial signalling protein N terminal repeat TH3_17600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_17600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_17600 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_17605 PF12729 Four helix bundle sensory module for signal transduction TH3_17605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_17605 PF00672 HAMP domain TH3_17610 PF00111 2Fe-2S iron-sulfur cluster binding domain TH3_17610 PF00175 Oxidoreductase NAD-binding domain TH3_17610 PF00970 Oxidoreductase FAD-binding domain TH3_17615 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TH3_17615 PF05221 S-adenosyl-L-homocysteine hydrolase TH3_17620 PF02798 Glutathione S-transferase, N-terminal domain TH3_17625 PF02560 Cyanate lyase C-terminal domain TH3_17630 PF00005 ABC transporter TH3_17635 PF00528 Binding-protein-dependent transport system inner membrane component TH3_17645 PF01590 GAF domain TH3_17645 PF00158 Sigma-54 interaction domain TH3_17655 PF01923 Cobalamin adenosyltransferase TH3_17660 PF01012 Electron transfer flavoprotein domain TH3_17665 PF00766 Electron transfer flavoprotein FAD-binding domain TH3_17665 PF01012 Electron transfer flavoprotein domain TH3_17670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TH3_17670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TH3_17675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TH3_17675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TH3_17680 PF00294 pfkB family carbohydrate kinase TH3_17685 PF08534 Redoxin TH3_17690 PF00206 Lyase TH3_17690 PF14698 Argininosuccinate lyase C-terminal TH3_17700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TH3_17700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TH3_17705 PF13533 Biotin-lipoyl like TH3_17710 PF12833 Helix-turn-helix domain TH3_17710 PF02311 AraC-like ligand binding domain TH3_17730 PF00005 ABC transporter TH3_17760 PF00892 EamA-like transporter family TH3_17765 PF02153 Prephenate dehydrogenase TH3_17770 PF00155 Aminotransferase class I and II TH3_17780 PF00561 alpha/beta hydrolase fold TH3_17785 PF07021 Methionine biosynthesis protein MetW TH3_17785 PF00561 alpha/beta hydrolase fold TH3_17800 PF02391 MoaE protein TH3_17805 PF01066 CDP-alcohol phosphatidyltransferase TH3_17810 PF00860 Permease family TH3_17815 PF08459 UvrC Helix-hairpin-helix N-terminal TH3_17815 PF02151 UvrB/uvrC motif TH3_17815 PF12826 Helix-hairpin-helix motif TH3_17815 PF01541 GIY-YIG catalytic domain TH3_17820 PF02152 Dihydroneopterin aldolase TH3_17830 PF01699 Sodium/calcium exchanger protein TH3_17835 PF02254 TrkA-N domain TH3_17835 PF00999 Sodium/hydrogen exchanger family TH3_17840 PF00072 Response regulator receiver domain TH3_17840 PF00486 Transcriptional regulatory protein, C terminal TH3_17845 PF01895 PhoU domain TH3_17850 PF00005 ABC transporter TH3_17855 PF00528 Binding-protein-dependent transport system inner membrane component TH3_17860 PF00528 Binding-protein-dependent transport system inner membrane component TH3_17865 PF12849 PBP superfamily domain TH3_17880 PF13183 4Fe-4S dicluster domain TH3_17880 PF02754 Cysteine-rich domain TH3_17885 PF01565 FAD binding domain TH3_17890 PF02913 FAD linked oxidases, C-terminal domain TH3_17890 PF01565 FAD binding domain TH3_17895 PF00364 Biotin-requiring enzyme TH3_17895 PF00289 Biotin carboxylase, N-terminal domain TH3_17895 PF02785 Biotin carboxylase C-terminal domain TH3_17895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TH3_17895 PF00682 HMGL-like TH3_17895 PF02436 Conserved carboxylase domain TH3_17900 PF17200 Single Cache domain 2 TH3_17900 PF07730 Histidine kinase TH3_17905 PF00196 Bacterial regulatory proteins, luxR family TH3_17905 PF00072 Response regulator receiver domain TH3_17910 PF13545 Crp-like helix-turn-helix domain TH3_17910 PF00027 Cyclic nucleotide-binding domain TH3_17920 PF01258 Prokaryotic dksA/traR C4-type zinc finger TH3_17935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_17940 PF00512 His Kinase A (phospho-acceptor) domain TH3_17940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_17940 PF13188 PAS domain TH3_17940 PF00072 Response regulator receiver domain TH3_17940 PF08448 PAS fold TH3_17950 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TH3_17950 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TH3_17955 PF01493 GXGXG motif TH3_17955 PF00310 Glutamine amidotransferases class-II TH3_17955 PF04898 Glutamate synthase central domain TH3_17955 PF01645 Conserved region in glutamate synthase TH3_17960 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_17960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TH3_17965 PF02673 Bacitracin resistance protein BacA TH3_17990 PF00881 Nitroreductase family TH3_18005 PF18146 Damage-inducible protein CinA KH domain TH3_18005 PF02464 Competence-damaged protein TH3_18005 PF00994 Probable molybdopterin binding domain TH3_18010 PF00293 NUDIX domain TH3_18020 PF07516 SecA Wing and Scaffold domain TH3_18020 PF02810 SEC-C motif TH3_18020 PF01043 SecA preprotein cross-linking domain TH3_18020 PF07517 SecA DEAD-like domain TH3_18035 PF00639 PPIC-type PPIASE domain TH3_18040 PF01960 ArgJ family TH3_18050 PF08668 HDOD domain TH3_18060 PF00072 Response regulator receiver domain TH3_18060 PF13188 PAS domain TH3_18060 PF08448 PAS fold TH3_18060 PF00512 His Kinase A (phospho-acceptor) domain TH3_18060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_18065 PF02694 Uncharacterised BCR, YnfA/UPF0060 family TH3_18075 PF01037 Lrp/AsnC ligand binding domain TH3_18080 PF00351 Biopterin-dependent aromatic amino acid hydroxylase TH3_18085 PF00196 Bacterial regulatory proteins, luxR family TH3_18085 PF00072 Response regulator receiver domain TH3_18095 PF01642 Methylmalonyl-CoA mutase TH3_18100 PF02310 B12 binding domain TH3_18100 PF01642 Methylmalonyl-CoA mutase TH3_18120 PF01207 Dihydrouridine synthase (Dus) TH3_18125 PF13229 Right handed beta helix region TH3_18125 PF12708 Pectate lyase superfamily protein TH3_18125 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TH3_18130 PF00529 HlyD membrane-fusion protein of T1SS TH3_18135 PF00664 ABC transporter transmembrane region TH3_18135 PF00005 ABC transporter TH3_18140 PF01435 Peptidase family M48 TH3_18150 PF01914 MarC family integral membrane protein TH3_18155 PF00571 CBS domain TH3_18160 PF01699 Sodium/calcium exchanger protein TH3_18170 PF01053 Cys/Met metabolism PLP-dependent enzyme TH3_18175 PF00158 Sigma-54 interaction domain TH3_18175 PF18024 Helix-turn-helix domain TH3_18195 PF13657 HipA N-terminal domain TH3_18195 PF07804 HipA-like C-terminal domain TH3_18200 PF03466 LysR substrate binding domain TH3_18200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_18205 PF00107 Zinc-binding dehydrogenase TH3_18205 PF08240 Alcohol dehydrogenase GroES-like domain TH3_18210 PF00756 Putative esterase TH3_18215 PF02361 Cobalt transport protein TH3_18220 PF00005 ABC transporter TH3_18225 PF02632 BioY family TH3_18240 PF02492 CobW/HypB/UreG, nucleotide-binding domain TH3_18245 PF01730 UreF TH3_18250 PF05194 UreE urease accessory protein, C-terminal domain TH3_18250 PF02814 UreE urease accessory protein, N-terminal domain TH3_18255 PF00449 Urease alpha-subunit, N-terminal domain TH3_18255 PF01979 Amidohydrolase family TH3_18260 PF00699 Urease beta subunit TH3_18265 PF00547 Urease, gamma subunit TH3_18270 PF01774 UreD urease accessory protein TH3_18275 PF00005 ABC transporter TH3_18280 PF12399 Branched-chain amino acid ATP-binding cassette transporter TH3_18280 PF00005 ABC transporter TH3_18290 PF02653 Branched-chain amino acid transport system / permease component TH3_18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_18300 PF03466 LysR substrate binding domain TH3_18315 PF03466 LysR substrate binding domain TH3_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_18320 PF03466 LysR substrate binding domain TH3_18325 PF00850 Histone deacetylase domain TH3_18330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_18330 PF16591 Helical bimodular sensor domain TH3_18330 PF00672 HAMP domain TH3_18335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_18335 PF08447 PAS fold TH3_18345 PF02608 ABC transporter substrate-binding protein PnrA-like TH3_18360 PF00005 ABC transporter TH3_18365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TH3_18375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TH3_18375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TH3_18380 PF00111 2Fe-2S iron-sulfur cluster binding domain TH3_18380 PF01799 [2Fe-2S] binding domain TH3_18385 PF00576 HIUase/Transthyretin family TH3_18395 PF01014 Uricase TH3_18395 PF09349 OHCU decarboxylase TH3_18400 PF03561 Allantoicase repeat TH3_18405 PF04115 Ureidoglycolate lyase TH3_18410 PF13419 Haloacid dehalogenase-like hydrolase TH3_18425 PF13085 2Fe-2S iron-sulfur cluster binding domain TH3_18430 PF00890 FAD binding domain TH3_18430 PF02910 Fumarate reductase flavoprotein C-term TH3_18440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TH3_18445 PF01575 MaoC like domain TH3_18450 PF03328 HpcH/HpaI aldolase/citrate lyase family TH3_18455 PF13533 Biotin-lipoyl like TH3_18475 PF00144 Beta-lactamase TH3_18490 PF13635 Domain of unknown function (DUF4143) TH3_18490 PF13173 AAA domain TH3_18505 PF04012 PspA/IM30 family TH3_18510 PF00158 Sigma-54 interaction domain TH3_18510 PF02954 Bacterial regulatory protein, Fis family TH3_18520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_18520 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_18520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_18525 PF00484 Carbonic anhydrase TH3_18540 PF00108 Thiolase, N-terminal domain TH3_18540 PF02803 Thiolase, C-terminal domain TH3_18545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_18545 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_18545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_18560 PF00270 DEAD/DEAH box helicase TH3_18560 PF00271 Helicase conserved C-terminal domain TH3_18565 PF00672 HAMP domain TH3_18565 PF17200 Single Cache domain 2 TH3_18565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_18575 PF02348 Cytidylyltransferase TH3_18580 PF00034 Cytochrome c TH3_18585 PF00459 Inositol monophosphatase family TH3_18595 PF01810 LysE type translocator TH3_18610 PF02080 TrkA-C domain TH3_18610 PF00999 Sodium/hydrogen exchanger family TH3_18610 PF03471 Transporter associated domain TH3_18615 PF01037 Lrp/AsnC ligand binding domain TH3_18635 PF00106 short chain dehydrogenase TH3_18640 PF01329 Pterin 4 alpha carbinolamine dehydratase TH3_18645 PF03167 Uracil DNA glycosylase superfamily TH3_18655 PF02789 Cytosol aminopeptidase family, N-terminal domain TH3_18655 PF00883 Cytosol aminopeptidase family, catalytic domain TH3_18665 PF01810 LysE type translocator TH3_18675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TH3_18675 PF00005 ABC transporter TH3_18680 PF00528 Binding-protein-dependent transport system inner membrane component TH3_18680 PF12911 N-terminal TM domain of oligopeptide transport permease C TH3_18685 PF00528 Binding-protein-dependent transport system inner membrane component TH3_18690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TH3_18695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_18695 PF03466 LysR substrate binding domain TH3_18710 PF14765 Polyketide synthase dehydratase TH3_18710 PF08240 Alcohol dehydrogenase GroES-like domain TH3_18710 PF00698 Acyl transferase domain TH3_18710 PF00550 Phosphopantetheine attachment site TH3_18710 PF08659 KR domain TH3_18710 PF02801 Beta-ketoacyl synthase, C-terminal domain TH3_18710 PF00109 Beta-ketoacyl synthase, N-terminal domain TH3_18710 PF16197 Ketoacyl-synthetase C-terminal extension TH3_18720 PF00999 Sodium/hydrogen exchanger family TH3_18720 PF02254 TrkA-N domain TH3_18735 PF01965 DJ-1/PfpI family TH3_18760 PF01037 Lrp/AsnC ligand binding domain TH3_18765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_18775 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_18780 PF01175 Urocanase Rossmann-like domain TH3_18780 PF17392 Urocanase C-terminal domain TH3_18780 PF17391 Urocanase N-terminal domain TH3_18790 PF00221 Aromatic amino acid lyase TH3_18795 PF01979 Amidohydrolase family TH3_18805 PF07702 UTRA domain TH3_18805 PF00392 Bacterial regulatory proteins, gntR family TH3_18820 PF02834 LigT like Phosphoesterase TH3_18825 PF02678 Pirin TH3_18825 PF05726 Pirin C-terminal cupin domain TH3_18830 PF00248 Aldo/keto reductase family TH3_18850 PF13472 GDSL-like Lipase/Acylhydrolase family TH3_18855 PF00005 ABC transporter TH3_18865 PF00501 AMP-binding enzyme TH3_18865 PF13193 AMP-binding enzyme C-terminal domain TH3_18875 PF01027 Inhibitor of apoptosis-promoting Bax1 TH3_18885 PF01435 Peptidase family M48 TH3_18890 PF00873 AcrB/AcrD/AcrF family TH3_18895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TH3_18905 PF05088 Bacterial NAD-glutamate dehydrogenase TH3_18930 PF00085 Thioredoxin TH3_18940 PF03966 Trm112p-like protein TH3_18950 PF03922 OmpW family TH3_18955 PF01494 FAD binding domain TH3_18960 PF00543 Nitrogen regulatory protein P-II TH3_18965 PF00909 Ammonium Transporter Family TH3_18980 PF09397 Ftsk gamma domain TH3_18980 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TH3_18980 PF17854 FtsK alpha domain TH3_18980 PF01580 FtsK/SpoIIIE family TH3_18985 PF17200 Single Cache domain 2 TH3_18985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_18985 PF00672 HAMP domain TH3_18990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_18990 PF00672 HAMP domain TH3_18990 PF17200 Single Cache domain 2 TH3_18995 PF00085 Thioredoxin TH3_19000 PF13361 UvrD-like helicase C-terminal domain TH3_19000 PF00580 UvrD/REP helicase N-terminal domain TH3_19000 PF12705 PD-(D/E)XK nuclease superfamily TH3_19005 PF12705 PD-(D/E)XK nuclease superfamily TH3_19010 PF12804 MobA-like NTP transferase domain TH3_19020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TH3_19025 PF07992 Pyridine nucleotide-disulphide oxidoreductase TH3_19045 PF01638 HxlR-like helix-turn-helix TH3_19050 PF03928 Haem-degrading TH3_19055 PF06421 GTP-binding protein LepA C-terminus TH3_19055 PF03144 Elongation factor Tu domain 2 TH3_19055 PF00009 Elongation factor Tu GTP binding domain TH3_19055 PF00679 Elongation factor G C-terminus TH3_19060 PF00360 Phytochrome region TH3_19060 PF08446 PAS fold TH3_19060 PF00512 His Kinase A (phospho-acceptor) domain TH3_19060 PF01590 GAF domain TH3_19060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_19070 PF03484 tRNA synthetase B5 domain TH3_19070 PF03147 Ferredoxin-fold anticodon binding domain TH3_19070 PF03483 B3/4 domain TH3_19070 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TH3_19070 PF01588 Putative tRNA binding domain TH3_19075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TH3_19075 PF01409 tRNA synthetases class II core domain (F) TH3_19080 PF00453 Ribosomal protein L20 TH3_19085 PF01632 Ribosomal protein L35 TH3_19090 PF00072 Response regulator receiver domain TH3_19095 PF05198 Translation initiation factor IF-3, N-terminal domain TH3_19095 PF00707 Translation initiation factor IF-3, C-terminal domain TH3_19105 PF13477 Glycosyl transferase 4-like TH3_19105 PF00534 Glycosyl transferases group 1 TH3_19130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TH3_19130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TH3_19135 PF00814 Glycoprotease family TH3_19140 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TH3_19140 PF03900 Porphobilinogen deaminase, C-terminal domain TH3_19160 PF01808 AICARFT/IMPCHase bienzyme TH3_19160 PF02142 MGS-like domain TH3_19165 PF02719 Polysaccharide biosynthesis protein TH3_19170 PF00953 Glycosyl transferase family 4 TH3_19175 PF01189 16S rRNA methyltransferase RsmB/F TH3_19175 PF01029 NusB family TH3_19180 PF00834 Ribulose-phosphate 3 epimerase family TH3_19185 PF07896 Protein of unknown function (DUF1674) TH3_19190 PF16921 Tex protein YqgF-like domain TH3_19190 PF00575 S1 RNA binding domain TH3_19190 PF09371 Tex-like protein N-terminal domain TH3_19190 PF17674 HHH domain TH3_19200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TH3_19200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TH3_19220 PF00171 Aldehyde dehydrogenase family TH3_19225 PF00202 Aminotransferase class-III TH3_19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_19240 PF03466 LysR substrate binding domain TH3_19245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_19245 PF00672 HAMP domain TH3_19245 PF12729 Four helix bundle sensory module for signal transduction TH3_19250 PF07690 Major Facilitator Superfamily TH3_19265 PF05433 Glycine zipper 2TM domain TH3_19265 PF16998 17 kDa outer membrane surface antigen TH3_19280 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) TH3_19285 PF00501 AMP-binding enzyme TH3_19285 PF13193 AMP-binding enzyme C-terminal domain TH3_19290 PF13411 MerR HTH family regulatory protein TH3_19295 PF02803 Thiolase, C-terminal domain TH3_19295 PF00108 Thiolase, N-terminal domain TH3_19300 PF00378 Enoyl-CoA hydratase/isomerase TH3_19300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TH3_19300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TH3_19305 PF12806 Acetyl-CoA dehydrogenase C-terminal like TH3_19305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TH3_19305 PF02770 Acyl-CoA dehydrogenase, middle domain TH3_19305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TH3_19315 PF00378 Enoyl-CoA hydratase/isomerase TH3_19320 PF00106 short chain dehydrogenase TH3_19330 PF00535 Glycosyl transferase family 2 TH3_19335 PF04349 Periplasmic glucan biosynthesis protein, MdoG TH3_19340 PF12852 Cupin TH3_19340 PF12833 Helix-turn-helix domain TH3_19355 PF01970 Tripartite tricarboxylate transporter TctA family TH3_19370 PF01925 Sulfite exporter TauE/SafE TH3_19375 PF07729 FCD domain TH3_19375 PF00392 Bacterial regulatory proteins, gntR family TH3_19380 PF01177 Asp/Glu/Hydantoin racemase TH3_19390 PF00528 Binding-protein-dependent transport system inner membrane component TH3_19400 PF08402 TOBE domain TH3_19400 PF00005 ABC transporter TH3_19410 PF00171 Aldehyde dehydrogenase family TH3_19420 PF03466 LysR substrate binding domain TH3_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_19430 PF03466 LysR substrate binding domain TH3_19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_19435 PF02678 Pirin TH3_19435 PF17954 Quercetinase C-terminal cupin domain TH3_19445 PF00072 Response regulator receiver domain TH3_19445 PF00486 Transcriptional regulatory protein, C terminal TH3_19450 PF00158 Sigma-54 interaction domain TH3_19450 PF00072 Response regulator receiver domain TH3_19450 PF02954 Bacterial regulatory protein, Fis family TH3_19455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_19455 PF00512 His Kinase A (phospho-acceptor) domain TH3_19465 PF00563 EAL domain TH3_19465 PF05231 MASE1 TH3_19470 PF00158 Sigma-54 interaction domain TH3_19470 PF02954 Bacterial regulatory protein, Fis family TH3_19470 PF00072 Response regulator receiver domain TH3_19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_19475 PF00512 His Kinase A (phospho-acceptor) domain TH3_19475 PF08521 Two-component sensor kinase N-terminal TH3_19480 PF00072 Response regulator receiver domain TH3_19480 PF00486 Transcriptional regulatory protein, C terminal TH3_19495 PF08281 Sigma-70, region 4 TH3_19495 PF04542 Sigma-70 region 2 TH3_19510 PF02515 CoA-transferase family III TH3_19520 PF03401 Tripartite tricarboxylate transporter family receptor TH3_19530 PF01970 Tripartite tricarboxylate transporter TctA family TH3_19535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_19535 PF00672 HAMP domain TH3_19540 PF05145 Transition state regulatory protein AbrB TH3_19545 PF02397 Bacterial sugar transferase TH3_19555 PF02563 Polysaccharide biosynthesis/export protein TH3_19560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TH3_19560 PF00205 Thiamine pyrophosphate enzyme, central domain TH3_19560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TH3_19580 PF00005 ABC transporter TH3_19590 PF00291 Pyridoxal-phosphate dependent enzyme TH3_19595 PF00290 Tryptophan synthase alpha chain TH3_19600 PF01039 Carboxyl transferase domain TH3_19600 PF17848 Acetyl-coA carboxylase zinc finger domain TH3_19605 PF08245 Mur ligase middle domain TH3_19605 PF02875 Mur ligase family, glutamate ligase domain TH3_19615 PF00476 DNA polymerase family A TH3_19615 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TH3_19615 PF01367 5'-3' exonuclease, C-terminal SAM fold TH3_19615 PF01612 3'-5' exonuclease TH3_19620 PF01113 Dihydrodipicolinate reductase, N-terminus TH3_19620 PF05173 Dihydrodipicolinate reductase, C-terminus TH3_19625 PF00226 DnaJ domain TH3_19625 PF00684 DnaJ central domain TH3_19625 PF01556 DnaJ C terminal domain TH3_19630 PF00012 Hsp70 protein TH3_19640 PF00730 HhH-GPD superfamily base excision DNA repair protein TH3_19640 PF00633 Helix-hairpin-helix motif TH3_19640 PF10576 Iron-sulfur binding domain of endonuclease III TH3_19650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_19655 PF02021 Uncharacterised protein family UPF0102 TH3_19675 PF13369 Transglutaminase-like superfamily TH3_19680 PF00294 pfkB family carbohydrate kinase TH3_19690 PF07690 Major Facilitator Superfamily TH3_19695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TH3_19700 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TH3_19700 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TH3_19705 PF04963 Sigma-54 factor, core binding domain TH3_19705 PF04552 Sigma-54, DNA binding domain TH3_19705 PF00309 Sigma-54 factor, Activator interacting domain (AID) TH3_19710 PF00005 ABC transporter TH3_19725 PF00571 CBS domain TH3_19725 PF01380 SIS domain TH3_19730 PF00570 HRDC domain TH3_19730 PF01612 3'-5' exonuclease TH3_19745 PF04055 Radical SAM superfamily TH3_19745 PF06969 HemN C-terminal domain TH3_19750 PF01725 Ham1 family TH3_19755 PF01138 3' exoribonuclease family, domain 1 TH3_19755 PF03725 3' exoribonuclease family, domain 2 TH3_19760 PF01628 HrcA protein C terminal domain TH3_19765 PF01025 GrpE TH3_19770 PF02146 Sir2 family TH3_19780 PF00892 EamA-like transporter family TH3_19800 PF03466 LysR substrate binding domain TH3_19800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_19805 PF16363 GDP-mannose 4,6 dehydratase TH3_19815 PF00719 Inorganic pyrophosphatase TH3_19830 PF01106 NifU-like domain TH3_19835 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TH3_19850 PF00390 Malic enzyme, N-terminal domain TH3_19850 PF03949 Malic enzyme, NAD binding domain TH3_19850 PF01515 Phosphate acetyl/butaryl transferase TH3_19860 PF01624 MutS domain I TH3_19860 PF05190 MutS family domain IV TH3_19860 PF05188 MutS domain II TH3_19860 PF05192 MutS domain III TH3_19860 PF00488 MutS domain V TH3_19865 PF08335 GlnD PII-uridylyltransferase TH3_19865 PF01909 Nucleotidyltransferase domain TH3_19865 PF01966 HD domain TH3_19870 PF03023 Lipid II flippase MurJ TH3_19875 PF00579 tRNA synthetases class I (W and Y) TH3_19885 PF00925 GTP cyclohydrolase II TH3_19890 PF00486 Transcriptional regulatory protein, C terminal TH3_19890 PF00072 Response regulator receiver domain TH3_19900 PF02581 Thiamine monophosphate synthase TH3_19910 PF13609 Gram-negative porin TH3_19945 PF02195 ParB-like nuclease domain TH3_19945 PF17762 HTH domain found in ParB protein TH3_19950 PF13614 AAA domain TH3_19955 PF02527 rRNA small subunit methyltransferase G TH3_19960 PF01134 Glucose inhibited division protein A TH3_19960 PF13932 GidA associated domain TH3_19965 PF01926 50S ribosome-binding GTPase TH3_19965 PF12631 MnmE helical domain TH3_19965 PF10396 GTP-binding protein TrmE N-terminus TH3_19980 PF03190 Protein of unknown function, DUF255 TH3_19990 PF08240 Alcohol dehydrogenase GroES-like domain TH3_19990 PF00107 Zinc-binding dehydrogenase TH3_19995 PF02824 TGS domain TH3_19995 PF04607 Region found in RelA / SpoT proteins TH3_19995 PF13291 ACT domain TH3_20000 PF07497 Rho termination factor, RNA-binding domain TH3_20000 PF07498 Rho termination factor, N-terminal domain TH3_20000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TH3_20005 PF13426 PAS domain TH3_20005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_20005 PF08447 PAS fold TH3_20030 PF00929 Exonuclease TH3_20035 PF01121 Dephospho-CoA kinase TH3_20040 PF08501 Shikimate dehydrogenase substrate binding domain TH3_20040 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TH3_20040 PF01488 Shikimate / quinate 5-dehydrogenase TH3_20045 PF02545 Maf-like protein TH3_20050 PF03618 Kinase/pyrophosphorylase TH3_20055 PF01208 Uroporphyrinogen decarboxylase (URO-D) TH3_20060 PF00762 Ferrochelatase TH3_20070 PF02556 Preprotein translocase subunit SecB TH3_20075 PF04186 FxsA cytoplasmic membrane protein TH3_20080 PF04280 Tim44-like domain TH3_20095 PF04055 Radical SAM superfamily TH3_20120 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TH3_20120 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TH3_20160 PF01078 Magnesium chelatase, subunit ChlI TH3_20160 PF13335 Magnesium chelatase, subunit ChlI C-terminal TH3_20165 PF00398 Ribosomal RNA adenine dimethylase TH3_20190 PF03466 LysR substrate binding domain TH3_20190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_20195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TH3_20210 PF01230 HIT domain TH3_20215 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TH3_20220 PF00977 Histidine biosynthesis protein TH3_20225 PF00977 Histidine biosynthesis protein TH3_20230 PF00583 Acetyltransferase (GNAT) family TH3_20235 PF00117 Glutamine amidotransferase class-I TH3_20245 PF00475 Imidazoleglycerol-phosphate dehydratase TH3_20250 PF01979 Amidohydrolase family TH3_20250 PF13382 Adenine deaminase C-terminal domain TH3_20255 PF00227 Proteasome subunit TH3_20260 PF07724 AAA domain (Cdc48 subfamily) TH3_20260 PF10431 C-terminal, D2-small domain, of ClpB protein TH3_20260 PF00004 ATPase family associated with various cellular activities (AAA) TH3_20265 PF16736 Single Cache-like TH3_20265 PF00989 PAS fold TH3_20265 PF00512 His Kinase A (phospho-acceptor) domain TH3_20265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TH3_20270 PF00881 Nitroreductase family TH3_20280 PF02441 Flavoprotein TH3_20280 PF04127 DNA / pantothenate metabolism flavoprotein TH3_20285 PF00692 dUTPase TH3_20290 PF02082 Transcriptional regulator TH3_20295 PF00291 Pyridoxal-phosphate dependent enzyme TH3_20300 PF00899 ThiF family TH3_20310 PF01810 LysE type translocator TH3_20315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TH3_20315 PF03466 LysR substrate binding domain TH3_20320 PF02308 MgtC family TH3_20325 PF00356 Bacterial regulatory proteins, lacI family TH3_20330 PF00232 Glycosyl hydrolase family 1 TH3_20335 PF01547 Bacterial extracellular solute-binding protein TH3_20345 PF00528 Binding-protein-dependent transport system inner membrane component TH3_20360 PF00814 Glycoprotease family TH3_20375 PF01475 Ferric uptake regulator family TH3_20390 PF00919 Uncharacterized protein family UPF0004 TH3_20390 PF04055 Radical SAM superfamily TH3_20390 PF01938 TRAM domain TH3_20395 PF02562 PhoH-like protein TH3_20400 PF02130 Uncharacterized protein family UPF0054 TH3_20405 PF00571 CBS domain TH3_20405 PF03471 Transporter associated domain TH3_20410 PF00795 Carbon-nitrogen hydrolase TH3_20415 PF01381 Helix-turn-helix TH3_20420 PF02773 S-adenosylmethionine synthetase, C-terminal domain TH3_20420 PF02772 S-adenosylmethionine synthetase, central domain TH3_20420 PF00438 S-adenosylmethionine synthetase, N-terminal domain TH3_20425 PF02390 Putative methyltransferase TH3_20430 PF04542 Sigma-70 region 2 TH3_20430 PF08281 Sigma-70, region 4 TH3_20440 PF00593 TonB dependent receptor TH3_20440 PF07715 TonB-dependent Receptor Plug Domain TH3_20450 PF00664 ABC transporter transmembrane region TH3_20450 PF00005 ABC transporter TH3_20455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TH3_20455 PF00529 HlyD membrane-fusion protein of T1SS TH3_20460 PF01126 Heme oxygenase TH3_20465 PF17384 RimP C-terminal SH3 domain TH3_20465 PF02576 RimP N-terminal domain TH3_20470 PF00575 S1 RNA binding domain TH3_20470 PF13184 NusA-like KH domain TH3_20470 PF08529 NusA N-terminal domain TH3_20475 PF04296 Protein of unknown function (DUF448) TH3_20480 PF04760 Translation initiation factor IF-2, N-terminal region TH3_20480 PF11987 Translation-initiation factor 2 TH3_20480 PF03144 Elongation factor Tu domain 2 TH3_20480 PF00009 Elongation factor Tu GTP binding domain TH3_20480 PF08364 Bacterial translation initiation factor IF-2 associated region TH3_20485 PF02033 Ribosome-binding factor A TH3_20490 PF09157 Pseudouridine synthase II TruB, C-terminal TH3_20490 PF16198 tRNA pseudouridylate synthase B C-terminal domain TH3_20490 PF01509 TruB family pseudouridylate synthase (N terminal domain) TH3_20495 PF00312 Ribosomal protein S15 TH3_20500 PF01138 3' exoribonuclease family, domain 1 TH3_20500 PF00013 KH domain TH3_20500 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TH3_20500 PF00575 S1 RNA binding domain TH3_20500 PF03725 3' exoribonuclease family, domain 2 TH3_20515 PF02915 Rubrerythrin TH3_20525 PF00005 ABC transporter TH3_20530 PF01032 FecCD transport family TH3_20540 PF01209 ubiE/COQ5 methyltransferase family TH3_20550 PF07729 FCD domain TH3_20550 PF00392 Bacterial regulatory proteins, gntR family TH3_20560 PF07690 Major Facilitator Superfamily TH3_20570 PF06968 Biotin and Thiamin Synthesis associated domain TH3_20570 PF04055 Radical SAM superfamily TH3_20575 PF02632 BioY family TH3_20590 PF08379 Bacterial transglutaminase-like N-terminal region TH3_20590 PF01841 Transglutaminase-like superfamily TH3_20595 PF14403 Circularly permuted ATP-grasp type 2 TH3_20595 PF04168 A predicted alpha-helical domain with a conserved ER motif. TH3_20600 PF14403 Circularly permuted ATP-grasp type 2 TH3_20605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_20610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_20615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_20620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_20625 PF02570 Precorrin-8X methylmutase TH3_20630 PF01903 CbiX TH3_20635 PF03186 CobD/Cbib protein TH3_20645 PF01467 Cytidylyltransferase-like TH3_20645 PF00294 pfkB family carbohydrate kinase TH3_20650 PF13580 SIS domain TH3_20660 PF02277 Phosphoribosyltransferase TH3_20665 PF02654 Cobalamin-5-phosphate synthase TH3_20670 PF00300 Histidine phosphatase superfamily (branch 1) TH3_20680 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TH3_20685 PF07683 Cobalamin synthesis protein cobW C-terminal domain TH3_20685 PF02492 CobW/HypB/UreG, nucleotide-binding domain TH3_20690 PF02514 CobN/Magnesium Chelatase TH3_20705 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TH3_20710 PF07685 CobB/CobQ-like glutamine amidotransferase domain TH3_20715 PF00043 Glutathione S-transferase, C-terminal domain TH3_20715 PF13417 Glutathione S-transferase, N-terminal domain TH3_20740 PF04321 RmlD substrate binding domain TH3_20745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_20750 PF02571 Precorrin-6x reductase CbiJ/CobK TH3_20755 PF01888 CbiD TH3_20760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TH3_20770 PF02630 SCO1/SenC TH3_20775 PF07685 CobB/CobQ-like glutamine amidotransferase domain TH3_20775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TH3_20780 PF03692 Putative zinc- or iron-chelating domain TH3_20785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TH3_20785 PF08447 PAS fold TH3_20785 PF13426 PAS domain TH3_20790 PF00753 Metallo-beta-lactamase superfamily TH3_20800 PF00011 Hsp20/alpha crystallin family TH3_20805 PF00211 Adenylate and Guanylate cyclase catalytic domain TH3_20810 PF00958 GMP synthase C terminal domain TH3_20810 PF00117 Glutamine amidotransferase class-I TH3_20820 PF04143 Sulphur transport TH3_20835 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TH3_20840 PF02224 Cytidylate kinase TH3_20845 PF00575 S1 RNA binding domain TH3_20850 PF01343 Peptidase family S49 TH3_20855 PF00216 Bacterial DNA-binding protein TH3_20865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TH3_20870 PF07690 Major Facilitator Superfamily TH3_20875 PF01925 Sulfite exporter TauE/SafE TH3_20880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TH3_20880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TH3_20880 PF06827 Zinc finger found in FPG and IleRS TH3_20885 PF00378 Enoyl-CoA hydratase/isomerase TH3_20890 PF01649 Ribosomal protein S20 TH3_21043 PF13333 Integrase core domain TH3_21043 PF00665 Integrase core domain TH3_21043 PF13276 HTH-like domain TH3_21048 PF01527 Transposase TH3_21053 PF13340 Putative transposase of IS4/5 family (DUF4096) TH3_21063 PF00717 Peptidase S24-like TH3_21093 PF01850 PIN domain TH3_21233 PF13657 HipA N-terminal domain TH3_21233 PF07804 HipA-like C-terminal domain TH3_21263 PF01131 DNA topoisomerase TH3_21263 PF01751 Toprim domain TH3_21348 PF09722 Protein of unknown function (DUF2384) TH3_21388 PF09339 IclR helix-turn-helix domain TH3_21388 PF01614 Bacterial transcriptional regulator TH3_21393 PF01565 FAD binding domain TH3_21393 PF02913 FAD linked oxidases, C-terminal domain TH3_21398 PF03480 Bacterial extracellular solute-binding protein, family 7 TH3_21403 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TH3_21408 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TH3_21413 PF01118 Semialdehyde dehydrogenase, NAD binding domain TH3_21413 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TH3_21418 PF07836 DmpG-like communication domain TH3_21418 PF00682 HMGL-like TH3_21433 PF09722 Protein of unknown function (DUF2384) TH3_21438 PF02796 Helix-turn-helix domain of resolvase TH3_21438 PF00239 Resolvase, N terminal domain TH3_21558 PF10410 DnaB-helicase binding domain of primase TH3_21558 PF08275 DNA primase catalytic core, N-terminal domain TH3_21558 PF01807 CHC2 zinc finger TH3_21638 PF00437 Type II/IV secretion system protein TH3_21698 PF00437 Type II/IV secretion system protein TH3_21788 PF04231 Endonuclease I TH3_21818 PF01381 Helix-turn-helix TH3_21848 PF01381 Helix-turn-helix TH3_21848 PF00145 C-5 cytosine-specific DNA methylase TH3_21863 PF01555 DNA methylase TH3_21873 PF10134 Replication initiator protein A TH3_22018 PF13438 Domain of unknown function (DUF4113) TH3_22018 PF00817 impB/mucB/samB family TH3_22018 PF11799 impB/mucB/samB family C-terminal domain TH3_22023 PF04945 YHS domain