TH3_00075	PWY-5659	GDP-mannose biosynthesis
TH3_00075	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TH3_00080	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
TH3_00085	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
TH3_00085	PWY-5739	GDP-D-perosamine biosynthesis
TH3_00085	PWY-5740	GDP-L-colitose biosynthesis
TH3_00085	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
TH3_00085	PWY-7573	GDP-mycosamine biosynthesis
TH3_00115	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_00115	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_00115	PWY-6470	peptidoglycan biosynthesis V (β-lactam resistance)
TH3_00115	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_00120	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_00120	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_00120	PWY-6470	peptidoglycan biosynthesis V (β-lactam resistance)
TH3_00120	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_00125	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_00160	PWY-4983	L-citrulline-nitric oxide cycle
TH3_00160	PWY-4984	urea cycle
TH3_00160	PWY-5	canavanine biosynthesis
TH3_00160	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_00160	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_00185	PWY-4202	arsenate detoxification I (glutaredoxin)
TH3_00185	PWY-4621	arsenate detoxification II (glutaredoxin)
TH3_00210	PWY-4981	L-proline biosynthesis II (from arginine)
TH3_00210	PWY-4984	urea cycle
TH3_00210	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_00255	PWY-5108	L-isoleucine biosynthesis V
TH3_00255	PWY-5132	humulone biosynthesis
TH3_00255	PWY-5133	cohumulone biosynthesis
TH3_00255	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TH3_00255	PWY-7118	chitin degradation to ethanol
TH3_00255	PWY-7857	TH3_00255
TH3_00360	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TH3_00450	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_00465	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_00465	PWY-6416	quinate degradation II
TH3_00465	PWY-6707	gallate biosynthesis
TH3_00495	PWY-5381	pyridine nucleotide cycling (plants)
TH3_00495	PWY-7761	TH3_00495
TH3_00565	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TH3_00565	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TH3_00590	PWY-5958	acridone alkaloid biosynthesis
TH3_00590	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TH3_00590	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TH3_00605	PWY-5839	menaquinol-7 biosynthesis
TH3_00605	PWY-5844	menaquinol-9 biosynthesis
TH3_00605	PWY-5849	menaquinol-6 biosynthesis
TH3_00605	PWY-5890	menaquinol-10 biosynthesis
TH3_00605	PWY-5891	menaquinol-11 biosynthesis
TH3_00605	PWY-5892	menaquinol-12 biosynthesis
TH3_00605	PWY-5895	menaquinol-13 biosynthesis
TH3_00655	PWY-2941	L-lysine biosynthesis II
TH3_00655	PWY-2942	L-lysine biosynthesis III
TH3_00655	PWY-5097	L-lysine biosynthesis VI
TH3_00655	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_00655	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
TH3_00655	PWY-6559	spermidine biosynthesis II
TH3_00655	PWY-6562	norspermidine biosynthesis
TH3_00655	PWY-7153	grixazone biosynthesis
TH3_00655	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_00655	PWY-7977	TH3_00655
TH3_00665	PWY-2201	folate transformations I
TH3_00665	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_00665	PWY-7909	TH3_00665
TH3_00715	PWY-5663	tetrahydrobiopterin biosynthesis I
TH3_00715	PWY-5664	tetrahydrobiopterin biosynthesis II
TH3_00715	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TH3_00715	PWY-6703	preQ<sub>0</sub> biosynthesis
TH3_00715	PWY-6983	tetrahydrobiopterin biosynthesis III
TH3_00715	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TH3_00715	PWY-7852	TH3_00715
TH3_00985	PWY-6825	phosphatidylcholine biosynthesis V
TH3_01005	PWY-5506	methanol oxidation to formaldehyde IV
TH3_01010	PWY-5481	pyruvate fermentation to lactate
TH3_01010	PWY-6901	superpathway of glucose and xylose degradation
TH3_01060	PWY-7805	TH3_01060
TH3_01060	PWY-7807	TH3_01060
TH3_01065	PWY-7805	TH3_01065
TH3_01065	PWY-7807	TH3_01065
TH3_01070	PWY-7399	methylphosphonate degradation II
TH3_01070	PWY-7805	TH3_01070
TH3_01070	PWY-7807	TH3_01070
TH3_01075	PWY-7399	methylphosphonate degradation II
TH3_01075	PWY-7805	TH3_01075
TH3_01075	PWY-7807	TH3_01075
TH3_01085	PWY-7399	methylphosphonate degradation II
TH3_01085	PWY-7805	TH3_01085
TH3_01085	PWY-7807	TH3_01085
TH3_01100	PWY-7399	methylphosphonate degradation II
TH3_01100	PWY-7805	TH3_01100
TH3_01100	PWY-7807	TH3_01100
TH3_01120	PWY-7799	TH3_01120
TH3_01120	PWY-7800	TH3_01120
TH3_01125	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_01125	PWY-7118	chitin degradation to ethanol
TH3_01125	PWY-7294	xylose degradation IV
TH3_01125	PWY-7295	L-arabinose degradation IV
TH3_01125	PWY-7854	TH3_01125
TH3_01145	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_01280	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TH3_01280	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TH3_01285	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TH3_01290	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TH3_01295	PWY-5392	reductive TCA cycle II
TH3_01295	PWY-5537	pyruvate fermentation to acetate V
TH3_01295	PWY-5538	pyruvate fermentation to acetate VI
TH3_01295	PWY-5690	TCA cycle II (plants and fungi)
TH3_01295	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_01295	PWY-6728	methylaspartate cycle
TH3_01295	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_01295	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TH3_01300	PWY-5392	reductive TCA cycle II
TH3_01300	PWY-5537	pyruvate fermentation to acetate V
TH3_01300	PWY-5538	pyruvate fermentation to acetate VI
TH3_01300	PWY-5690	TCA cycle II (plants and fungi)
TH3_01300	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_01300	PWY-6728	methylaspartate cycle
TH3_01300	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_01300	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TH3_01305	PWY-1622	formaldehyde assimilation I (serine pathway)
TH3_01305	PWY-5392	reductive TCA cycle II
TH3_01305	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TH3_01305	PWY-5690	TCA cycle II (plants and fungi)
TH3_01305	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_01305	PWY-6728	methylaspartate cycle
TH3_01305	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_01305	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TH3_01305	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TH3_01335	PWY-5316	nicotine biosynthesis
TH3_01335	PWY-5381	pyridine nucleotide cycling (plants)
TH3_01335	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TH3_01335	PWY-7342	superpathway of nicotine biosynthesis
TH3_01340	PWY-5316	nicotine biosynthesis
TH3_01340	PWY-7342	superpathway of nicotine biosynthesis
TH3_01360	PWY-381	nitrate reduction II (assimilatory)
TH3_01360	PWY-5675	nitrate reduction V (assimilatory)
TH3_01360	PWY-6549	L-glutamine biosynthesis III
TH3_01360	PWY-6963	ammonia assimilation cycle I
TH3_01360	PWY-6964	ammonia assimilation cycle II
TH3_01390	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TH3_01390	PWY-5723	Rubisco shunt
TH3_01420	PWY-7980	TH3_01420
TH3_01430	PWY-7980	TH3_01430
TH3_01460	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
TH3_01475	PWY-1042	glycolysis IV (plant cytosol)
TH3_01475	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_01475	PWY-6901	superpathway of glucose and xylose degradation
TH3_01475	PWY-7003	glycerol degradation to butanol
TH3_01555	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TH3_01555	PWY-2201	folate transformations I
TH3_01555	PWY-3841	folate transformations II
TH3_01555	PWY-5030	L-histidine degradation III
TH3_01555	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_01555	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TH3_01555	PWY-7909	TH3_01555
TH3_01635	PWY-2941	L-lysine biosynthesis II
TH3_01635	PWY-2942	L-lysine biosynthesis III
TH3_01635	PWY-5097	L-lysine biosynthesis VI
TH3_01635	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_01635	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
TH3_01635	PWY-6559	spermidine biosynthesis II
TH3_01635	PWY-6562	norspermidine biosynthesis
TH3_01635	PWY-7153	grixazone biosynthesis
TH3_01635	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_01635	PWY-7977	TH3_01635
TH3_01665	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TH3_01690	PWY-6829	tRNA methylation (yeast)
TH3_01690	PWY-7285	methylwyosine biosynthesis
TH3_01690	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TH3_01715	PWY-6654	phosphopantothenate biosynthesis III
TH3_01760	PWY-3781	aerobic respiration I (cytochrome c)
TH3_01760	PWY-4521	arsenite oxidation I (respiratory)
TH3_01760	PWY-6692	Fe(II) oxidation
TH3_01760	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_01770	PWY-2941	L-lysine biosynthesis II
TH3_01770	PWY-5097	L-lysine biosynthesis VI
TH3_01775	PWY-1042	glycolysis IV (plant cytosol)
TH3_01775	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_01775	PWY-6886	1-butanol autotrophic biosynthesis
TH3_01775	PWY-6901	superpathway of glucose and xylose degradation
TH3_01775	PWY-7003	glycerol degradation to butanol
TH3_01835	PWY-1042	glycolysis IV (plant cytosol)
TH3_01835	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TH3_01835	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_01835	PWY-5723	Rubisco shunt
TH3_01835	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_01835	PWY-6886	1-butanol autotrophic biosynthesis
TH3_01835	PWY-6901	superpathway of glucose and xylose degradation
TH3_01835	PWY-7003	glycerol degradation to butanol
TH3_01835	PWY-7124	ethylene biosynthesis V (engineered)
TH3_01835	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TH3_01865	PWY-5381	pyridine nucleotide cycling (plants)
TH3_01865	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TH3_01865	PWY-7761	TH3_01865
TH3_01870	PWY-3341	L-proline biosynthesis III
TH3_01870	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TH3_01905	PWY-5316	nicotine biosynthesis
TH3_01905	PWY-7342	superpathway of nicotine biosynthesis
TH3_01910	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_02095	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_02100	PWY-6164	3-dehydroquinate biosynthesis I
TH3_02145	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
TH3_02150	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
TH3_02215	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TH3_02215	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TH3_02215	PWY-7717	TH3_02215
TH3_02215	PWY-7733	TH3_02215
TH3_02215	PWY-7734	TH3_02215
TH3_02215	PWY-7765	TH3_02215
TH3_02300	PWY-7242	D-fructuronate degradation
TH3_02305	PWY-6531	mannitol cycle
TH3_02335	PWY-6610	adenine and adenosine salvage IV
TH3_02470	PWY-6562	norspermidine biosynthesis
TH3_02545	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TH3_02585	PWY-7855	TH3_02585
TH3_02590	PWY-7855	TH3_02590
TH3_02660	PWY-4381	fatty acid biosynthesis initiation I
TH3_02660	PWY-5743	3-hydroxypropanoate cycle
TH3_02660	PWY-5744	glyoxylate assimilation
TH3_02660	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_02660	PWY-6722	candicidin biosynthesis
TH3_02730	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TH3_02730	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
TH3_02735	PWY-1281	sulfoacetaldehyde degradation I
TH3_02735	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TH3_02735	PWY-5482	pyruvate fermentation to acetate II
TH3_02735	PWY-5485	pyruvate fermentation to acetate IV
TH3_02735	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_02735	PWY-6637	sulfolactate degradation II
TH3_02735	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TH3_02890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_02890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_02945	PWY-6617	adenosine nucleotides degradation III
TH3_03040	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_03040	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TH3_03040	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TH3_03080	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
TH3_03135	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
TH3_03135	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
TH3_03135	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
TH3_03135	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
TH3_03135	PWY-6978	plastoquinol-9 biosynthesis II
TH3_03170	PWY-6840	homoglutathione biosynthesis
TH3_03170	PWY-7255	ergothioneine biosynthesis I (bacteria)
TH3_03175	PWY-3461	L-tyrosine biosynthesis II
TH3_03175	PWY-3462	L-phenylalanine biosynthesis II
TH3_03175	PWY-6120	L-tyrosine biosynthesis III
TH3_03175	PWY-6627	salinosporamide A biosynthesis
TH3_03175	PWY-7626	bacilysin biosynthesis
TH3_03180	PWY-4261	glycerol degradation I
TH3_03180	PWY-6118	glycerol-3-phosphate shuttle
TH3_03180	PWY-6952	glycerophosphodiester degradation
TH3_03210	PWY-5392	reductive TCA cycle II
TH3_03210	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TH3_03210	PWY-5690	TCA cycle II (plants and fungi)
TH3_03210	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_03210	PWY-6728	methylaspartate cycle
TH3_03210	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_03210	PWY-7254	TCA cycle VII (acetate-producers)
TH3_03210	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TH3_03325	PWY-5194	siroheme biosynthesis
TH3_03325	PWY-5196	factor 430 biosynthesis
TH3_03325	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_03360	PWY-4081	glutathione redox reactions I
TH3_03380	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_03380	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_03380	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_03380	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_03410	PWY-5530	sorbitol biosynthesis II
TH3_03440	PWY-6164	3-dehydroquinate biosynthesis I
TH3_03465	PWY-5381	pyridine nucleotide cycling (plants)
TH3_03465	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TH3_03465	PWY-7761	TH3_03465
TH3_03470	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_03515	PWY-5101	L-isoleucine biosynthesis II
TH3_03515	PWY-6871	3-methylbutanol biosynthesis
TH3_03600	PWY-6823	molybdenum cofactor biosynthesis
TH3_03650	PWY-7980	TH3_03650
TH3_04130	PWY-7731	TH3_04130
TH3_04170	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_04170	PWY-6549	L-glutamine biosynthesis III
TH3_04170	PWY-6728	methylaspartate cycle
TH3_04170	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_04170	PWY-7124	ethylene biosynthesis V (engineered)
TH3_04170	PWY-7254	TCA cycle VII (acetate-producers)
TH3_04170	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TH3_04270	PWY-5669	phosphatidylethanolamine biosynthesis I
TH3_04275	PWY-5669	phosphatidylethanolamine biosynthesis I
TH3_04330	PWY-6703	preQ<sub>0</sub> biosynthesis
TH3_04340	PWY-6703	preQ<sub>0</sub> biosynthesis
TH3_04360	PWY-6854	ethylene biosynthesis III (microbes)
TH3_04550	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_04550	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_04550	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_04550	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_04635	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_04640	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
TH3_04640	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TH3_04940	PWY-5686	UMP biosynthesis
TH3_05115	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_05120	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TH3_05120	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TH3_05120	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TH3_05240	PWY-3781	aerobic respiration I (cytochrome c)
TH3_05240	PWY-4521	arsenite oxidation I (respiratory)
TH3_05240	PWY-6692	Fe(II) oxidation
TH3_05240	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_05240	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
TH3_05280	PWY-3841	folate transformations II
TH3_05280	PWY-6614	tetrahydrofolate biosynthesis
TH3_05285	PWY-3841	folate transformations II
TH3_05285	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_05285	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_05285	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TH3_05285	PWY-7199	pyrimidine deoxyribonucleosides salvage
TH3_05285	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_05295	PWY-5392	reductive TCA cycle II
TH3_05295	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TH3_05295	PWY-5690	TCA cycle II (plants and fungi)
TH3_05295	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_05295	PWY-6728	methylaspartate cycle
TH3_05295	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_05295	PWY-7254	TCA cycle VII (acetate-producers)
TH3_05295	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TH3_05370	PWY-5443	aminopropanol phosphate biosynthesis I
TH3_05410	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_05410	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_05410	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_05410	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_05415	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_05415	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_05440	PWY-6871	3-methylbutanol biosynthesis
TH3_05500	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TH3_05500	PWY-6596	adenosine nucleotides degradation I
TH3_05500	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TH3_05515	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TH3_05735	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TH3_05740	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TH3_05740	PWY-6855	chitin degradation I (archaea)
TH3_05740	PWY-6906	chitin derivatives degradation
TH3_05745	PWY-5101	L-isoleucine biosynthesis II
TH3_05745	PWY-5103	L-isoleucine biosynthesis III
TH3_05745	PWY-5104	L-isoleucine biosynthesis IV
TH3_05745	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_05750	PWY-2722	trehalose degradation IV
TH3_05750	PWY-2723	trehalose degradation V
TH3_05750	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TH3_05750	PWY-5661	GDP-glucose biosynthesis
TH3_05750	PWY-621	sucrose degradation III (sucrose invertase)
TH3_05750	PWY-7238	sucrose biosynthesis II
TH3_05750	PWY-7385	1,3-propanediol biosynthesis (engineered)
TH3_05755	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TH3_05755	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TH3_05755	PWY-7242	D-fructuronate degradation
TH3_05755	PWY-7310	D-glucosaminate degradation
TH3_05755	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
TH3_06100	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TH3_06215	PWY-4381	fatty acid biosynthesis initiation I
TH3_06215	PWY-5743	3-hydroxypropanoate cycle
TH3_06215	PWY-5744	glyoxylate assimilation
TH3_06215	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_06215	PWY-6722	candicidin biosynthesis
TH3_06340	PWY-4921	protein citrullination
TH3_06440	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TH3_06440	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TH3_06440	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_06440	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_06440	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TH3_06440	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TH3_06440	PWY-7205	CMP phosphorylation
TH3_06440	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_06440	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_06440	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TH3_06440	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_06440	PWY-7224	purine deoxyribonucleosides salvage
TH3_06440	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_06440	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TH3_06445	PWY-3781	aerobic respiration I (cytochrome c)
TH3_06445	PWY-4521	arsenite oxidation I (respiratory)
TH3_06445	PWY-6692	Fe(II) oxidation
TH3_06445	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_06460	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_06460	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TH3_06465	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_06465	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TH3_06465	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TH3_06590	PWY-6891	thiazole biosynthesis II (Bacillus)
TH3_06590	PWY-6892	thiazole biosynthesis I (E. coli)
TH3_06590	PWY-7560	methylerythritol phosphate pathway II
TH3_06680	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_06685	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_06685	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_06685	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_06685	PWY-6113	superpathway of mycolate biosynthesis
TH3_06685	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_06685	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_06685	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_06685	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_06685	PWY-7858	TH3_06685
TH3_06685	PWYG-321	mycolate biosynthesis
TH3_06745	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TH3_06745	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TH3_06795	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TH3_06795	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
TH3_06840	PWY-5686	UMP biosynthesis
TH3_06840	PWY-7790	TH3_06840
TH3_06840	PWY-7791	TH3_06840
TH3_06935	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TH3_06985	PWY-6840	homoglutathione biosynthesis
TH3_06985	PWY-7255	ergothioneine biosynthesis I (bacteria)
TH3_07065	PWY-2301	<i>myo</i>-inositol biosynthesis
TH3_07065	PWY-4702	phytate degradation I
TH3_07065	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
TH3_07075	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TH3_07075	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TH3_07075	PWY-6897	thiamin salvage II
TH3_07075	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TH3_07075	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TH3_07075	PWY-7356	thiamin salvage IV (yeast)
TH3_07075	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TH3_07085	PWY-1042	glycolysis IV (plant cytosol)
TH3_07085	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_07085	PWY-6901	superpathway of glucose and xylose degradation
TH3_07085	PWY-7003	glycerol degradation to butanol
TH3_07090	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TH3_07090	PWY-5723	Rubisco shunt
TH3_07090	PWY-6891	thiazole biosynthesis II (Bacillus)
TH3_07090	PWY-6892	thiazole biosynthesis I (E. coli)
TH3_07090	PWY-6901	superpathway of glucose and xylose degradation
TH3_07090	PWY-7560	methylerythritol phosphate pathway II
TH3_07190	PWY-6614	tetrahydrofolate biosynthesis
TH3_07215	PWY-6749	CMP-legionaminate biosynthesis I
TH3_07220	PWY-6910	hydroxymethylpyrimidine salvage
TH3_07220	PWY-7356	thiamin salvage IV (yeast)
TH3_07220	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TH3_07240	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
TH3_07245	PWY-5101	L-isoleucine biosynthesis II
TH3_07245	PWY-5103	L-isoleucine biosynthesis III
TH3_07245	PWY-5104	L-isoleucine biosynthesis IV
TH3_07245	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_07265	PWY-6167	flavin biosynthesis II (archaea)
TH3_07335	PWY-381	nitrate reduction II (assimilatory)
TH3_07335	PWY-5675	nitrate reduction V (assimilatory)
TH3_07335	PWY-6549	L-glutamine biosynthesis III
TH3_07335	PWY-6963	ammonia assimilation cycle I
TH3_07335	PWY-6964	ammonia assimilation cycle II
TH3_07450	PWY-40	putrescine biosynthesis I
TH3_07450	PWY-6305	putrescine biosynthesis IV
TH3_07670	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TH3_07670	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_07670	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TH3_07670	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_07670	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_07670	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_07670	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_07670	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TH3_07810	PWY-7533	gliotoxin biosynthesis
TH3_07855	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_07860	PWY-1042	glycolysis IV (plant cytosol)
TH3_07860	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TH3_07860	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_07860	PWY-5723	Rubisco shunt
TH3_07860	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_07860	PWY-6886	1-butanol autotrophic biosynthesis
TH3_07860	PWY-6901	superpathway of glucose and xylose degradation
TH3_07860	PWY-7003	glycerol degradation to butanol
TH3_07860	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TH3_07860	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TH3_07975	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_07975	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_08045	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_08065	PWY-7805	TH3_08065
TH3_08065	PWY-7807	TH3_08065
TH3_08135	PWY-6605	adenine and adenosine salvage II
TH3_08135	PWY-6610	adenine and adenosine salvage IV
TH3_08135	PWY-7805	TH3_08135
TH3_08135	PWY-7807	TH3_08135
TH3_08375	PWY-5350	thiosulfate disproportionation III (rhodanese)
TH3_08375	PWY-7927	TH3_08375
TH3_08510	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
TH3_08615	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TH3_08710	PWY-3821	galactose degradation III
TH3_08710	PWY-6317	galactose degradation I (Leloir pathway)
TH3_08710	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
TH3_08710	PWY-6527	stachyose degradation
TH3_08710	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
TH3_08710	PWY-7344	UDP-D-galactose biosynthesis
TH3_08790	PWY-6823	molybdenum cofactor biosynthesis
TH3_08800	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_08800	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_08800	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_08800	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_08820	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_08820	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_08820	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_08820	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_08870	PWY-7892	TH3_08870
TH3_08890	PWY-4041	&gamma;-glutamyl cycle
TH3_08890	PWY-4061	glutathione-mediated detoxification I
TH3_08890	PWY-5826	hypoglycin biosynthesis
TH3_08890	PWY-6842	glutathione-mediated detoxification II
TH3_08890	PWY-7112	4-hydroxy-2-nonenal detoxification
TH3_08890	PWY-7559	glutathione degradation (DUG pathway - yeast)
TH3_08955	PWY-5686	UMP biosynthesis
TH3_08955	PWY-7790	TH3_08955
TH3_08955	PWY-7791	TH3_08955
TH3_08980	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TH3_09025	PWY-7199	pyrimidine deoxyribonucleosides salvage
TH3_09105	PWY-381	nitrate reduction II (assimilatory)
TH3_09105	PWY-5675	nitrate reduction V (assimilatory)
TH3_09105	PWY-6549	L-glutamine biosynthesis III
TH3_09105	PWY-6963	ammonia assimilation cycle I
TH3_09105	PWY-6964	ammonia assimilation cycle II
TH3_09170	PWY-6556	pyrimidine ribonucleosides salvage II
TH3_09170	PWY-7181	pyrimidine deoxyribonucleosides degradation
TH3_09170	PWY-7193	pyrimidine ribonucleosides salvage I
TH3_09170	PWY-7199	pyrimidine deoxyribonucleosides salvage
TH3_09175	PWY-4202	arsenate detoxification I (glutaredoxin)
TH3_09175	PWY-5532	adenosine nucleotides degradation IV
TH3_09175	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TH3_09175	PWY-6608	guanosine nucleotides degradation III
TH3_09175	PWY-6609	adenine and adenosine salvage III
TH3_09175	PWY-6611	adenine and adenosine salvage V
TH3_09175	PWY-6620	guanine and guanosine salvage
TH3_09175	PWY-6627	salinosporamide A biosynthesis
TH3_09175	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
TH3_09175	PWY-7179	purine deoxyribonucleosides degradation I
TH3_09175	PWY-7179-1	purine deoxyribonucleosides degradation
TH3_09180	PWY-7181	pyrimidine deoxyribonucleosides degradation
TH3_09235	PWY-5108	L-isoleucine biosynthesis V
TH3_09235	PWY-5132	humulone biosynthesis
TH3_09235	PWY-5133	cohumulone biosynthesis
TH3_09235	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TH3_09235	PWY-7118	chitin degradation to ethanol
TH3_09235	PWY-7857	TH3_09235
TH3_09385	PWY-5392	reductive TCA cycle II
TH3_09385	PWY-5537	pyruvate fermentation to acetate V
TH3_09385	PWY-5538	pyruvate fermentation to acetate VI
TH3_09385	PWY-5690	TCA cycle II (plants and fungi)
TH3_09385	PWY-5913	TCA cycle VI (obligate autotrophs)
TH3_09385	PWY-6728	methylaspartate cycle
TH3_09385	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_09385	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TH3_09425	PWY-5958	acridone alkaloid biosynthesis
TH3_09425	PWY-6543	4-aminobenzoate biosynthesis
TH3_09425	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TH3_09425	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TH3_09430	PWY-5958	acridone alkaloid biosynthesis
TH3_09430	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TH3_09430	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TH3_09450	PWY-6167	flavin biosynthesis II (archaea)
TH3_09450	PWY-6168	flavin biosynthesis III (fungi)
TH3_09515	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
TH3_09520	PWY-5381	pyridine nucleotide cycling (plants)
TH3_09520	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TH3_09520	PWY-6596	adenosine nucleotides degradation I
TH3_09520	PWY-6606	guanosine nucleotides degradation II
TH3_09520	PWY-6607	guanosine nucleotides degradation I
TH3_09520	PWY-6608	guanosine nucleotides degradation III
TH3_09520	PWY-7185	UTP and CTP dephosphorylation I
TH3_09520	PWY-7821	TH3_09520
TH3_09600	PWY-1042	glycolysis IV (plant cytosol)
TH3_09600	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TH3_09600	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_09600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_09600	PWY-7385	1,3-propanediol biosynthesis (engineered)
TH3_09610	PWY-6906	chitin derivatives degradation
TH3_09610	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
TH3_09610	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
TH3_09760	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TH3_09765	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TH3_09810	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_09810	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_09815	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TH3_09815	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_09815	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_09815	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TH3_09815	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TH3_09815	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_09850	PWY-6409	pyoverdine I biosynthesis
TH3_09850	PWY-6562	norspermidine biosynthesis
TH3_09850	PWY-761	rhizobactin 1021 biosynthesis
TH3_09850	PWY-7855	TH3_09850
TH3_09850	PWY-7988	TH3_09850
TH3_09925	PWY-7560	methylerythritol phosphate pathway II
TH3_09960	PWY-4381	fatty acid biosynthesis initiation I
TH3_09985	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TH3_09985	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TH3_09985	PWY-6896	thiamin salvage I
TH3_09985	PWY-6897	thiamin salvage II
TH3_09995	PWY-6167	flavin biosynthesis II (archaea)
TH3_09995	PWY-6168	flavin biosynthesis III (fungi)
TH3_10000	PWY-6167	flavin biosynthesis II (archaea)
TH3_10000	PWY-6168	flavin biosynthesis III (fungi)
TH3_10000	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TH3_10000	PWY-7991	TH3_10000
TH3_10005	PWY-6167	flavin biosynthesis II (archaea)
TH3_10005	PWY-6168	flavin biosynthesis III (fungi)
TH3_10005	PWY-7980	TH3_10005
TH3_10010	PWY-7991	TH3_10010
TH3_10020	PWY-1622	formaldehyde assimilation I (serine pathway)
TH3_10020	PWY-181	photorespiration
TH3_10020	PWY-2161	folate polyglutamylation
TH3_10020	PWY-2201	folate transformations I
TH3_10020	PWY-3661	glycine betaine degradation I
TH3_10020	PWY-3661-1	glycine betaine degradation II (mammalian)
TH3_10020	PWY-3841	folate transformations II
TH3_10020	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_10100	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_10100	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TH3_10155	PWY-7802	TH3_10155
TH3_10205	PWY-6012	acyl carrier protein metabolism I
TH3_10205	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TH3_10205	PWY-6289	petrobactin biosynthesis
TH3_10230	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TH3_10230	PWY-6148	tetrahydromethanopterin biosynthesis
TH3_10230	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TH3_10230	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TH3_10230	PWY-7852	TH3_10230
TH3_10230	PWY-7853	TH3_10230
TH3_10265	PWY-2941	L-lysine biosynthesis II
TH3_10265	PWY-2942	L-lysine biosynthesis III
TH3_10265	PWY-5097	L-lysine biosynthesis VI
TH3_10275	PWY-7425	2-chloroacrylate degradation I
TH3_10290	PWY-5269	cardiolipin biosynthesis II
TH3_10290	PWY-5668	cardiolipin biosynthesis I
TH3_10290	PWY-7817	TH3_10290
TH3_10305	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TH3_10305	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
TH3_10310	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TH3_10310	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TH3_10335	PWY-1042	glycolysis IV (plant cytosol)
TH3_10335	PWY-1622	formaldehyde assimilation I (serine pathway)
TH3_10335	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TH3_10335	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_10335	PWY-5723	Rubisco shunt
TH3_10335	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_10335	PWY-6886	1-butanol autotrophic biosynthesis
TH3_10335	PWY-6901	superpathway of glucose and xylose degradation
TH3_10335	PWY-7003	glycerol degradation to butanol
TH3_10335	PWY-7124	ethylene biosynthesis V (engineered)
TH3_10335	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TH3_10340	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TH3_10340	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
TH3_10345	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TH3_10345	PWY-7177	UTP and CTP dephosphorylation II
TH3_10345	PWY-7185	UTP and CTP dephosphorylation I
TH3_10355	PWY-1042	glycolysis IV (plant cytosol)
TH3_10355	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_10355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_10355	PWY-7003	glycerol degradation to butanol
TH3_10365	PWY-5958	acridone alkaloid biosynthesis
TH3_10365	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TH3_10365	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TH3_10395	PWY-5958	acridone alkaloid biosynthesis
TH3_10395	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TH3_10395	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TH3_10410	PWY-6823	molybdenum cofactor biosynthesis
TH3_10425	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_10435	PWY-5386	methylglyoxal degradation I
TH3_10455	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_10455	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_10455	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_10455	PWY-5994	palmitate biosynthesis I (animals and fungi)
TH3_10455	PWY-6113	superpathway of mycolate biosynthesis
TH3_10455	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_10455	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_10455	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TH3_10455	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_10455	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_10455	PWY-7858	TH3_10455
TH3_10455	PWYG-321	mycolate biosynthesis
TH3_10480	PWY-7560	methylerythritol phosphate pathway II
TH3_10550	PWY-5741	ethylmalonyl-CoA pathway
TH3_10550	PWY-5743	3-hydroxypropanoate cycle
TH3_10550	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_10550	PWY-6728	methylaspartate cycle
TH3_10550	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TH3_10550	PWY-7854	TH3_10550
TH3_10560	PWY-3961	phosphopantothenate biosynthesis II
TH3_10565	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TH3_10565	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
TH3_10580	PWY-3781	aerobic respiration I (cytochrome c)
TH3_10580	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TH3_10580	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TH3_10580	PWY-6692	Fe(II) oxidation
TH3_10675	PWY-6938	NADH repair
TH3_10725	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
TH3_10770	PWY-3801	sucrose degradation II (sucrose synthase)
TH3_10770	PWY-5054	sorbitol biosynthesis I
TH3_10770	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
TH3_10770	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TH3_10770	PWY-5659	GDP-mannose biosynthesis
TH3_10770	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_10770	PWY-621	sucrose degradation III (sucrose invertase)
TH3_10770	PWY-622	starch biosynthesis
TH3_10770	PWY-6981	chitin biosynthesis
TH3_10770	PWY-6992	1,5-anhydrofructose degradation
TH3_10770	PWY-7238	sucrose biosynthesis II
TH3_10770	PWY-7347	sucrose biosynthesis III
TH3_10770	PWY-7385	1,3-propanediol biosynthesis (engineered)
TH3_10785	PWY-40	putrescine biosynthesis I
TH3_10785	PWY-6305	putrescine biosynthesis IV
TH3_10800	PWY-381	nitrate reduction II (assimilatory)
TH3_10800	PWY-5675	nitrate reduction V (assimilatory)
TH3_10800	PWY-6549	L-glutamine biosynthesis III
TH3_10800	PWY-6963	ammonia assimilation cycle I
TH3_10800	PWY-6964	ammonia assimilation cycle II
TH3_10835	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
TH3_10835	PWY-7494	choline degradation IV
TH3_10955	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TH3_11040	PWY-6123	inosine-5'-phosphate biosynthesis I
TH3_11040	PWY-6124	inosine-5'-phosphate biosynthesis II
TH3_11040	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TH3_11040	PWY-7234	inosine-5'-phosphate biosynthesis III
TH3_11045	PWY-1361	benzoyl-CoA degradation I (aerobic)
TH3_11045	PWY-2361	3-oxoadipate degradation
TH3_11045	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
TH3_11060	PWY-6041	4-sulfocatechol degradation
TH3_11065	PWY-6041	4-sulfocatechol degradation
TH3_11075	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
TH3_11185	PWY-6599	guanine and guanosine salvage II
TH3_11185	PWY-6609	adenine and adenosine salvage III
TH3_11185	PWY-6610	adenine and adenosine salvage IV
TH3_11185	PWY-6620	guanine and guanosine salvage
TH3_11210	PWY-5656	mannosylglycerate biosynthesis I
TH3_11370	PWY-6317	galactose degradation I (Leloir pathway)
TH3_11425	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
TH3_11425	PWY-7494	choline degradation IV
TH3_11440	PWY-7183	pyrimidine nucleobases salvage I
TH3_11585	PWY-7851	TH3_11585
TH3_11615	PWY-5686	UMP biosynthesis
TH3_11615	PWY-7790	TH3_11615
TH3_11615	PWY-7791	TH3_11615
TH3_11640	PWY-381	nitrate reduction II (assimilatory)
TH3_11640	PWY-5675	nitrate reduction V (assimilatory)
TH3_11640	PWY-6549	L-glutamine biosynthesis III
TH3_11640	PWY-6963	ammonia assimilation cycle I
TH3_11640	PWY-6964	ammonia assimilation cycle II
TH3_11790	PWY-7887	TH3_11790
TH3_11790	PWY-7892	TH3_11790
TH3_11795	PWY-6899	base-degraded thiamin salvage
TH3_11795	PWY-7356	thiamin salvage IV (yeast)
TH3_11830	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TH3_11835	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TH3_11845	PWY-6936	seleno-amino acid biosynthesis
TH3_11845	PWY-7274	D-cycloserine biosynthesis
TH3_11845	PWY-7870	TH3_11845
TH3_11860	PWY-7883	TH3_11860
TH3_11935	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_11935	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_11935	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_11935	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_11980	PWY-6891	thiazole biosynthesis II (Bacillus)
TH3_11980	PWY-6892	thiazole biosynthesis I (E. coli)
TH3_11985	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_11985	PWY-6416	quinate degradation II
TH3_11985	PWY-6707	gallate biosynthesis
TH3_12005	PWY-7801	TH3_12005
TH3_12065	PWY-6749	CMP-legionaminate biosynthesis I
TH3_12070	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
TH3_12070	PWY-7820	TH3_12070
TH3_12075	PWY-3801	sucrose degradation II (sucrose synthase)
TH3_12075	PWY-6527	stachyose degradation
TH3_12075	PWY-7238	sucrose biosynthesis II
TH3_12075	PWY-7343	UDP-glucose biosynthesis
TH3_12075	PWY-7817	TH3_12075
TH3_12130	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
TH3_12130	PWY-6853	ethylene biosynthesis II (microbes)
TH3_12130	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TH3_12145	PWY-4381	fatty acid biosynthesis initiation I
TH3_12145	PWY-5743	3-hydroxypropanoate cycle
TH3_12145	PWY-5744	glyoxylate assimilation
TH3_12145	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_12145	PWY-6722	candicidin biosynthesis
TH3_12160	PWY-5074	mevalonate degradation
TH3_12195	PWY-6683	sulfate reduction III (assimilatory)
TH3_12270	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TH3_12300	PWY-5367	petroselinate biosynthesis
TH3_12300	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_12300	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_12300	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_12300	PWY-5994	palmitate biosynthesis I (animals and fungi)
TH3_12300	PWY-6113	superpathway of mycolate biosynthesis
TH3_12300	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_12300	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_12300	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TH3_12300	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_12300	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_12300	PWY-7858	TH3_12300
TH3_12300	PWYG-321	mycolate biosynthesis
TH3_12305	PWY-4381	fatty acid biosynthesis initiation I
TH3_12305	PWY-6799	fatty acid biosynthesis (plant mitochondria)
TH3_12305	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TH3_12335	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TH3_12360	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_12360	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TH3_12360	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TH3_12360	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TH3_12420	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TH3_12420	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_12420	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TH3_12420	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_12420	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_12420	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_12420	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_12420	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TH3_12425	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TH3_12425	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_12425	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TH3_12425	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TH3_12425	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_12425	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TH3_12425	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TH3_12425	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TH3_12470	PWY-3221	dTDP-L-rhamnose biosynthesis II
TH3_12470	PWY-6808	dTDP-D-forosamine biosynthesis
TH3_12470	PWY-6942	dTDP-D-desosamine biosynthesis
TH3_12470	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
TH3_12470	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
TH3_12470	PWY-6974	dTDP-L-olivose biosynthesis
TH3_12470	PWY-6976	dTDP-L-mycarose biosynthesis
TH3_12470	PWY-7104	dTDP-L-megosamine biosynthesis
TH3_12470	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
TH3_12470	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
TH3_12470	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
TH3_12470	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
TH3_12470	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
TH3_12470	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
TH3_12470	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
TH3_12470	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
TH3_12470	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
TH3_12470	PWY-7688	TH3_12470
TH3_12470	PWY-7814	TH3_12470
TH3_12480	PWY-3221	dTDP-L-rhamnose biosynthesis II
TH3_12480	PWY-6808	dTDP-D-forosamine biosynthesis
TH3_12480	PWY-6942	dTDP-D-desosamine biosynthesis
TH3_12480	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
TH3_12480	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
TH3_12480	PWY-6974	dTDP-L-olivose biosynthesis
TH3_12480	PWY-6976	dTDP-L-mycarose biosynthesis
TH3_12480	PWY-7104	dTDP-L-megosamine biosynthesis
TH3_12480	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
TH3_12480	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
TH3_12480	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
TH3_12480	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
TH3_12480	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
TH3_12480	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
TH3_12480	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
TH3_12480	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
TH3_12480	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
TH3_12480	PWY-7688	TH3_12480
TH3_12480	PWY-7814	TH3_12480
TH3_12485	PWY-6749	CMP-legionaminate biosynthesis I
TH3_12490	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TH3_12500	PWY-5101	L-isoleucine biosynthesis II
TH3_12500	PWY-5103	L-isoleucine biosynthesis III
TH3_12500	PWY-5104	L-isoleucine biosynthesis IV
TH3_12500	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_12675	PWY-4261	glycerol degradation I
TH3_12675	PWY-6118	glycerol-3-phosphate shuttle
TH3_12675	PWY-6952	glycerophosphodiester degradation
TH3_12780	PWY-5278	sulfite oxidation III
TH3_12780	PWY-5340	sulfate activation for sulfonation
TH3_12780	PWY-6683	sulfate reduction III (assimilatory)
TH3_12780	PWY-6932	selenate reduction
TH3_12785	PWY-5278	sulfite oxidation III
TH3_12785	PWY-5340	sulfate activation for sulfonation
TH3_12785	PWY-6683	sulfate reduction III (assimilatory)
TH3_12785	PWY-6932	selenate reduction
TH3_12860	PWY-6683	sulfate reduction III (assimilatory)
TH3_12875	PWY-5194	siroheme biosynthesis
TH3_12875	PWY-5196	factor 430 biosynthesis
TH3_12875	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_12940	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TH3_12940	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TH3_12940	PWY-7242	D-fructuronate degradation
TH3_12940	PWY-7310	D-glucosaminate degradation
TH3_12940	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
TH3_12945	PWY-7130	L-glucose degradation
TH3_12985	PWY-2201	folate transformations I
TH3_12985	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_12985	PWY-7909	TH3_12985
TH3_13315	PWY-4261	glycerol degradation I
TH3_13340	PWY-4261	glycerol degradation I
TH3_13340	PWY-6118	glycerol-3-phosphate shuttle
TH3_13340	PWY-6952	glycerophosphodiester degradation
TH3_13395	PWY-5964	guanylyl molybdenum cofactor biosynthesis
TH3_13395	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
TH3_13605	PWY-6486	D-galacturonate degradation II
TH3_13605	PWY-6497	D-galactarate degradation II
TH3_13605	PWY-6499	D-glucarate degradation II
TH3_13605	PWY-6501	D-glucuronate degradation II
TH3_13640	PWY-4261	glycerol degradation I
TH3_13660	PWY-5101	L-isoleucine biosynthesis II
TH3_13660	PWY-5103	L-isoleucine biosynthesis III
TH3_13660	PWY-5104	L-isoleucine biosynthesis IV
TH3_13660	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_13710	PWY-5101	L-isoleucine biosynthesis II
TH3_13710	PWY-5103	L-isoleucine biosynthesis III
TH3_13710	PWY-5104	L-isoleucine biosynthesis IV
TH3_13710	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_13750	PWY-1881	formate oxidation to CO<sub>2</sub>
TH3_13750	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_13750	PWY-6696	oxalate degradation III
TH3_13750	PWY-7985	TH3_13750
TH3_13800	PWY-5642	2,4-dinitrotoluene degradation
TH3_13825	PWY-6012	acyl carrier protein metabolism I
TH3_13825	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TH3_13825	PWY-6289	petrobactin biosynthesis
TH3_13895	PWY-6012	acyl carrier protein metabolism I
TH3_13895	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TH3_13895	PWY-6289	petrobactin biosynthesis
TH3_13930	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_13930	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_13930	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_13930	PWY-5994	palmitate biosynthesis I (animals and fungi)
TH3_13930	PWY-6113	superpathway of mycolate biosynthesis
TH3_13930	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_13930	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_13930	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TH3_13930	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_13930	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_13930	PWY-7858	TH3_13930
TH3_13930	PWYG-321	mycolate biosynthesis
TH3_13975	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_13975	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_13975	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_13975	PWY-5994	palmitate biosynthesis I (animals and fungi)
TH3_13975	PWY-6113	superpathway of mycolate biosynthesis
TH3_13975	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_13975	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_13975	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TH3_13975	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_13975	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_13975	PWY-7858	TH3_13975
TH3_13975	PWYG-321	mycolate biosynthesis
TH3_13980	PWY-5367	petroselinate biosynthesis
TH3_13980	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_13980	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_13980	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_13980	PWY-5994	palmitate biosynthesis I (animals and fungi)
TH3_13980	PWY-6113	superpathway of mycolate biosynthesis
TH3_13980	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_13980	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_13980	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TH3_13980	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_13980	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_13980	PWY-7858	TH3_13980
TH3_13980	PWYG-321	mycolate biosynthesis
TH3_14030	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TH3_14030	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TH3_14070	PWY-1361	benzoyl-CoA degradation I (aerobic)
TH3_14070	PWY-5109	2-methylbutanoate biosynthesis
TH3_14070	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TH3_14070	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TH3_14070	PWY-5177	glutaryl-CoA degradation
TH3_14070	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_14070	PWY-6435	4-hydroxybenzoate biosynthesis V
TH3_14070	PWY-6583	pyruvate fermentation to butanol I
TH3_14070	PWY-6863	pyruvate fermentation to hexanol
TH3_14070	PWY-6883	pyruvate fermentation to butanol II
TH3_14070	PWY-6944	androstenedione degradation
TH3_14070	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TH3_14070	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TH3_14070	PWY-7007	methyl ketone biosynthesis
TH3_14070	PWY-7046	4-coumarate degradation (anaerobic)
TH3_14070	PWY-7094	fatty acid salvage
TH3_14070	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TH3_14070	PWY-735	jasmonic acid biosynthesis
TH3_14070	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TH3_14070	PWY-7606	docosahexaenoate biosynthesis III (mammals)
TH3_14070	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
TH3_14070	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
TH3_14070	PWY-7726	TH3_14070
TH3_14070	PWY-7778	TH3_14070
TH3_14070	PWY-7779	TH3_14070
TH3_14080	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TH3_14130	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TH3_14140	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TH3_14140	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
TH3_14170	PWY-6703	preQ<sub>0</sub> biosynthesis
TH3_14260	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_14260	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_14260	PWY-7953	TH3_14260
TH3_14375	PWY-5482	pyruvate fermentation to acetate II
TH3_14375	PWY-5485	pyruvate fermentation to acetate IV
TH3_14375	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_14385	PWY-1281	sulfoacetaldehyde degradation I
TH3_14385	PWY-5482	pyruvate fermentation to acetate II
TH3_14385	PWY-5485	pyruvate fermentation to acetate IV
TH3_14385	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_14385	PWY-6637	sulfolactate degradation II
TH3_14395	PWY-5676	acetyl-CoA fermentation to butanoate II
TH3_14395	PWY-5741	ethylmalonyl-CoA pathway
TH3_14395	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TH3_14395	PWY-7948	TH3_14395
TH3_14600	PWY-5108	L-isoleucine biosynthesis V
TH3_14600	PWY-5132	humulone biosynthesis
TH3_14600	PWY-5133	cohumulone biosynthesis
TH3_14600	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TH3_14600	PWY-7118	chitin degradation to ethanol
TH3_14600	PWY-7857	TH3_14600
TH3_14620	PWY-1042	glycolysis IV (plant cytosol)
TH3_14620	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TH3_14620	PWY-5484	glycolysis II (from fructose 6-phosphate)
TH3_14620	PWY-7385	1,3-propanediol biosynthesis (engineered)
TH3_14635	PWY-6123	inosine-5'-phosphate biosynthesis I
TH3_14635	PWY-7234	inosine-5'-phosphate biosynthesis III
TH3_14740	PWY-5963	thio-molybdenum cofactor biosynthesis
TH3_14765	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_14790	PWY-723	alkylnitronates degradation
TH3_14795	PWY-2941	L-lysine biosynthesis II
TH3_14795	PWY-2942	L-lysine biosynthesis III
TH3_14795	PWY-5097	L-lysine biosynthesis VI
TH3_14795	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
TH3_14795	PWY-6559	spermidine biosynthesis II
TH3_14795	PWY-6562	norspermidine biosynthesis
TH3_14795	PWY-7153	grixazone biosynthesis
TH3_14795	PWY-7977	TH3_14795
TH3_14800	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
TH3_14800	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
TH3_14800	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
TH3_14800	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
TH3_14800	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
TH3_14800	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
TH3_14800	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
TH3_14800	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
TH3_14800	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TH3_14800	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
TH3_14820	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TH3_14820	PWY-5491	diethylphosphate degradation
TH3_14890	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TH3_14890	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TH3_14905	PWY-7799	TH3_14905
TH3_14905	PWY-7800	TH3_14905
TH3_15025	PWY-6123	inosine-5'-phosphate biosynthesis I
TH3_15025	PWY-6124	inosine-5'-phosphate biosynthesis II
TH3_15025	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TH3_15025	PWY-7234	inosine-5'-phosphate biosynthesis III
TH3_15065	PWY-6123	inosine-5'-phosphate biosynthesis I
TH3_15065	PWY-6124	inosine-5'-phosphate biosynthesis II
TH3_15065	PWY-7234	inosine-5'-phosphate biosynthesis III
TH3_15070	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_15070	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TH3_15070	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TH3_15075	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_15075	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TH3_15075	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TH3_15080	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TH3_15080	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TH3_15080	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TH3_15145	PWY-2781	<i>cis</i>-zeatin biosynthesis
TH3_15150	PWY-5101	L-isoleucine biosynthesis II
TH3_15150	PWY-5103	L-isoleucine biosynthesis III
TH3_15150	PWY-5104	L-isoleucine biosynthesis IV
TH3_15150	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
TH3_15150	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
TH3_15150	PWY-6389	(<i>S</i>)-acetoin biosynthesis
TH3_15150	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_15155	PWY-5101	L-isoleucine biosynthesis II
TH3_15155	PWY-5103	L-isoleucine biosynthesis III
TH3_15155	PWY-5104	L-isoleucine biosynthesis IV
TH3_15155	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
TH3_15155	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
TH3_15155	PWY-6389	(<i>S</i>)-acetoin biosynthesis
TH3_15155	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_15160	PWY-5103	L-isoleucine biosynthesis III
TH3_15160	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_15165	PWY-6019	pseudouridine degradation
TH3_15240	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_15240	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_15240	PWY-7953	TH3_15240
TH3_15290	PWY-7511	protein ubiquitylation
TH3_15320	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TH3_15320	PWY-6549	L-glutamine biosynthesis III
TH3_15320	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TH3_15320	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TH3_15450	PWY-6700	queuosine biosynthesis
TH3_15470	PWY-6700	queuosine biosynthesis
TH3_15475	PWY-6700	queuosine biosynthesis
TH3_15480	PWY-6700	queuosine biosynthesis
TH3_15715	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TH3_15715	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TH3_15775	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_15775	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_15775	PWY-7953	TH3_15775
TH3_15780	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_15780	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_15780	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_15785	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_15785	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_15790	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_15790	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_15790	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_15790	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_15820	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_15820	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TH3_15820	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_15820	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_15825	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_15825	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_15825	PWY-7953	TH3_15825
TH3_15830	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_15830	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_15830	PWY-7953	TH3_15830
TH3_15835	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_15835	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_15835	PWY-7953	TH3_15835
TH3_16035	PWY-2201	folate transformations I
TH3_16035	PWY-3841	folate transformations II
TH3_16035	PWY-7977	TH3_16035
TH3_16045	PWY-2201	folate transformations I
TH3_16045	PWY-3841	folate transformations II
TH3_16120	PWY-3661	glycine betaine degradation I
TH3_16120	PWY-4722	creatinine degradation II
TH3_16125	PWY-3661	glycine betaine degradation I
TH3_16125	PWY-4722	creatinine degradation II
TH3_16130	PWY-3661	glycine betaine degradation I
TH3_16130	PWY-4722	creatinine degradation II
TH3_16135	PWY-3661	glycine betaine degradation I
TH3_16135	PWY-4722	creatinine degradation II
TH3_16165	PWY-5194	siroheme biosynthesis
TH3_16165	PWY-5196	factor 430 biosynthesis
TH3_16165	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_16230	PWY-3781	aerobic respiration I (cytochrome c)
TH3_16230	PWY-4521	arsenite oxidation I (respiratory)
TH3_16230	PWY-6692	Fe(II) oxidation
TH3_16230	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_16285	PWY-6748	nitrate reduction VII (denitrification)
TH3_16285	PWY-7084	nitrifier denitrification
TH3_16335	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_16335	PWY-5686	UMP biosynthesis
TH3_16335	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_16335	PWY-7790	TH3_16335
TH3_16335	PWY-7791	TH3_16335
TH3_16340	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_16340	PWY-5686	UMP biosynthesis
TH3_16340	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_16340	PWY-7790	TH3_16340
TH3_16340	PWY-7791	TH3_16340
TH3_16395	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TH3_16495	PWY-5674	nitrate reduction IV (dissimilatory)
TH3_16525	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
TH3_16575	PWY-3341	L-proline biosynthesis III
TH3_16575	PWY-4981	L-proline biosynthesis II (from arginine)
TH3_16575	PWY-6344	L-ornithine degradation II (Stickland reaction)
TH3_16630	PWY-5057	L-valine degradation II
TH3_16630	PWY-5076	L-leucine degradation III
TH3_16630	PWY-5078	L-isoleucine degradation II
TH3_16630	PWY-5101	L-isoleucine biosynthesis II
TH3_16630	PWY-5103	L-isoleucine biosynthesis III
TH3_16630	PWY-5104	L-isoleucine biosynthesis IV
TH3_16630	PWY-5108	L-isoleucine biosynthesis V
TH3_16630	PWY-7767	TH3_16630
TH3_16655	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TH3_16665	PWY-3781	aerobic respiration I (cytochrome c)
TH3_16665	PWY-6692	Fe(II) oxidation
TH3_16665	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
TH3_16665	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_16685	PWY-5386	methylglyoxal degradation I
TH3_16690	PWY-5659	GDP-mannose biosynthesis
TH3_16690	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TH3_16735	PWY-5676	acetyl-CoA fermentation to butanoate II
TH3_16735	PWY-5741	ethylmalonyl-CoA pathway
TH3_16735	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TH3_16735	PWY-7948	TH3_16735
TH3_16800	PWY-3341	L-proline biosynthesis III
TH3_16800	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TH3_16895	PWY-7884	TH3_16895
TH3_16905	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
TH3_16905	PWY-6167	flavin biosynthesis II (archaea)
TH3_16905	PWY-6168	flavin biosynthesis III (fungi)
TH3_16905	PWY-7863	TH3_16905
TH3_16980	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_16990	PWY-6654	phosphopantothenate biosynthesis III
TH3_17025	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_17265	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TH3_17360	PWY-7560	methylerythritol phosphate pathway II
TH3_17495	PWY-3781	aerobic respiration I (cytochrome c)
TH3_17495	PWY-4521	arsenite oxidation I (respiratory)
TH3_17495	PWY-6692	Fe(II) oxidation
TH3_17495	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_17570	PWY-7560	methylerythritol phosphate pathway II
TH3_17575	PWY-702	L-methionine biosynthesis II
TH3_17615	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TH3_17670	PWY-1361	benzoyl-CoA degradation I (aerobic)
TH3_17670	PWY-5109	2-methylbutanoate biosynthesis
TH3_17670	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TH3_17670	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TH3_17670	PWY-5177	glutaryl-CoA degradation
TH3_17670	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_17670	PWY-6435	4-hydroxybenzoate biosynthesis V
TH3_17670	PWY-6583	pyruvate fermentation to butanol I
TH3_17670	PWY-6863	pyruvate fermentation to hexanol
TH3_17670	PWY-6883	pyruvate fermentation to butanol II
TH3_17670	PWY-6944	androstenedione degradation
TH3_17670	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TH3_17670	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TH3_17670	PWY-7007	methyl ketone biosynthesis
TH3_17670	PWY-7046	4-coumarate degradation (anaerobic)
TH3_17670	PWY-7094	fatty acid salvage
TH3_17670	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TH3_17670	PWY-735	jasmonic acid biosynthesis
TH3_17670	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TH3_17670	PWY-7606	docosahexaenoate biosynthesis III (mammals)
TH3_17670	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
TH3_17670	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
TH3_17670	PWY-7726	TH3_17670
TH3_17670	PWY-7778	TH3_17670
TH3_17670	PWY-7779	TH3_17670
TH3_17675	PWY-4261	glycerol degradation I
TH3_17690	PWY-4983	L-citrulline-nitric oxide cycle
TH3_17690	PWY-4984	urea cycle
TH3_17690	PWY-5	canavanine biosynthesis
TH3_17690	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_17690	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TH3_17700	PWY-2941	L-lysine biosynthesis II
TH3_17700	PWY-2942	L-lysine biosynthesis III
TH3_17700	PWY-5097	L-lysine biosynthesis VI
TH3_17755	PWY-7942	TH3_17755
TH3_17765	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
TH3_17775	PWY-3461	L-tyrosine biosynthesis II
TH3_17775	PWY-3462	L-phenylalanine biosynthesis II
TH3_17775	PWY-6120	L-tyrosine biosynthesis III
TH3_17775	PWY-6627	salinosporamide A biosynthesis
TH3_17775	PWY-7626	bacilysin biosynthesis
TH3_17785	PWY-5344	L-homocysteine biosynthesis
TH3_17800	PWY-6823	molybdenum cofactor biosynthesis
TH3_17800	PWY-7887	TH3_17800
TH3_17805	PWY-5269	cardiolipin biosynthesis II
TH3_17805	PWY-5668	cardiolipin biosynthesis I
TH3_17805	PWY-7817	TH3_17805
TH3_17820	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TH3_17820	PWY-6148	tetrahydromethanopterin biosynthesis
TH3_17820	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TH3_17820	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TH3_17895	PWY-5750	itaconate biosynthesis
TH3_17895	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_17895	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
TH3_17950	PWY-5381	pyridine nucleotide cycling (plants)
TH3_17965	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
TH3_17990	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
TH3_18010	PWY-6502	oxidized GTP and dGTP detoxification
TH3_18040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TH3_18080	PWY-6134	L-tyrosine biosynthesis IV
TH3_18080	PWY-7158	L-phenylalanine degradation V
TH3_18165	PWY-6891	thiazole biosynthesis II (Bacillus)
TH3_18165	PWY-6892	thiazole biosynthesis I (E. coli)
TH3_18165	PWY-7560	methylerythritol phosphate pathway II
TH3_18170	PWY-7793	TH3_18170
TH3_18205	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_18205	PWY-3162	L-tryptophan degradation V (side chain pathway)
TH3_18205	PWY-5057	L-valine degradation II
TH3_18205	PWY-5076	L-leucine degradation III
TH3_18205	PWY-5078	L-isoleucine degradation II
TH3_18205	PWY-5079	L-phenylalanine degradation III
TH3_18205	PWY-5082	L-methionine degradation III
TH3_18205	PWY-5480	pyruvate fermentation to ethanol I
TH3_18205	PWY-5486	pyruvate fermentation to ethanol II
TH3_18205	PWY-5751	phenylethanol biosynthesis
TH3_18205	PWY-6313	serotonin degradation
TH3_18205	PWY-6333	acetaldehyde biosynthesis I
TH3_18205	PWY-6342	noradrenaline and adrenaline degradation
TH3_18205	PWY-6587	pyruvate fermentation to ethanol III
TH3_18205	PWY-6802	salidroside biosynthesis
TH3_18205	PWY-6871	3-methylbutanol biosynthesis
TH3_18205	PWY-7013	L-1,2-propanediol degradation
TH3_18205	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TH3_18205	PWY-7118	chitin degradation to ethanol
TH3_18205	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TH3_18205	PWY-7798	TH3_18205
TH3_18210	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_18255	PWY-5704	urea degradation II
TH3_18260	PWY-5704	urea degradation II
TH3_18265	PWY-5704	urea degradation II
TH3_18375	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_18375	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TH3_18375	PWY-6538	caffeine degradation III (bacteria, via demethylation)
TH3_18375	PWY-6596	adenosine nucleotides degradation I
TH3_18375	PWY-6606	guanosine nucleotides degradation II
TH3_18375	PWY-6607	guanosine nucleotides degradation I
TH3_18375	PWY-6608	guanosine nucleotides degradation III
TH3_18375	PWY-6999	theophylline degradation
TH3_18380	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_18380	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TH3_18380	PWY-6538	caffeine degradation III (bacteria, via demethylation)
TH3_18380	PWY-6596	adenosine nucleotides degradation I
TH3_18380	PWY-6606	guanosine nucleotides degradation II
TH3_18380	PWY-6607	guanosine nucleotides degradation I
TH3_18380	PWY-6608	guanosine nucleotides degradation III
TH3_18380	PWY-6999	theophylline degradation
TH3_18385	PWY-5691	urate degradation to allantoin I
TH3_18385	PWY-7394	urate degradation to allantoin II
TH3_18385	PWY-7849	TH3_18385
TH3_18395	PWY-5691	urate degradation to allantoin I
TH3_18395	PWY-7394	urate degradation to allantoin II
TH3_18395	PWY-7849	TH3_18395
TH3_18400	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
TH3_18405	PWY-5694	allantoin degradation to glyoxylate I
TH3_18405	PWY-5705	allantoin degradation to glyoxylate III
TH3_18425	PWY-3781	aerobic respiration I (cytochrome c)
TH3_18425	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TH3_18425	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TH3_18425	PWY-5690	TCA cycle II (plants and fungi)
TH3_18425	PWY-6728	methylaspartate cycle
TH3_18425	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_18425	PWY-7254	TCA cycle VII (acetate-producers)
TH3_18425	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_18430	PWY-3781	aerobic respiration I (cytochrome c)
TH3_18430	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TH3_18430	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TH3_18430	PWY-5690	TCA cycle II (plants and fungi)
TH3_18430	PWY-6728	methylaspartate cycle
TH3_18430	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TH3_18430	PWY-7254	TCA cycle VII (acetate-producers)
TH3_18430	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TH3_18445	PWY-5741	ethylmalonyl-CoA pathway
TH3_18445	PWY-5744	glyoxylate assimilation
TH3_18445	PWY-6728	methylaspartate cycle
TH3_18445	PWY-7854	TH3_18445
TH3_18525	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TH3_18525	PWY-5743	3-hydroxypropanoate cycle
TH3_18525	PWY-5744	glyoxylate assimilation
TH3_18525	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_18525	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TH3_18525	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TH3_18525	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TH3_18570	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
TH3_18575	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TH3_18640	PWY-7158	L-phenylalanine degradation V
TH3_18780	PWY-5028	L-histidine degradation II
TH3_18780	PWY-5030	L-histidine degradation III
TH3_18790	PWY-5028	L-histidine degradation II
TH3_18790	PWY-5030	L-histidine degradation III
TH3_18795	PWY-5028	L-histidine degradation II
TH3_18795	PWY-5030	L-histidine degradation III
TH3_18905	PWY-5022	4-aminobutanoate degradation V
TH3_18905	PWY-6728	methylaspartate cycle
TH3_18905	PWY-7126	ethylene biosynthesis IV
TH3_18910	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TH3_18910	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TH3_18910	PWY-5989	stearate biosynthesis II (bacteria and plants)
TH3_18910	PWY-6113	superpathway of mycolate biosynthesis
TH3_18910	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TH3_18910	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TH3_18910	PWY-7663	gondoate biosynthesis (anaerobic)
TH3_18910	PWY-7664	oleate biosynthesis IV (anaerobic)
TH3_18910	PWY-7858	TH3_18910
TH3_18910	PWYG-321	mycolate biosynthesis
TH3_19025	PWY-101	photosynthesis light reactions
TH3_19030	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TH3_19130	PWY-5667	CDP-diacylglycerol biosynthesis I
TH3_19130	PWY-5981	CDP-diacylglycerol biosynthesis III
TH3_19130	PWY-7902	TH3_19130
TH3_19140	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_19140	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TH3_19145	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TH3_19145	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TH3_19160	PWY-6123	inosine-5'-phosphate biosynthesis I
TH3_19160	PWY-6124	inosine-5'-phosphate biosynthesis II
TH3_19160	PWY-7234	inosine-5'-phosphate biosynthesis III
TH3_19170	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TH3_19170	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TH3_19170	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TH3_19180	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TH3_19180	PWY-5723	Rubisco shunt
TH3_19200	PWY-6854	ethylene biosynthesis III (microbes)
TH3_19300	PWY-1361	benzoyl-CoA degradation I (aerobic)
TH3_19300	PWY-5109	2-methylbutanoate biosynthesis
TH3_19300	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TH3_19300	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TH3_19300	PWY-5177	glutaryl-CoA degradation
TH3_19300	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_19300	PWY-6435	4-hydroxybenzoate biosynthesis V
TH3_19300	PWY-6583	pyruvate fermentation to butanol I
TH3_19300	PWY-6863	pyruvate fermentation to hexanol
TH3_19300	PWY-6883	pyruvate fermentation to butanol II
TH3_19300	PWY-6944	androstenedione degradation
TH3_19300	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TH3_19300	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TH3_19300	PWY-7007	methyl ketone biosynthesis
TH3_19300	PWY-7046	4-coumarate degradation (anaerobic)
TH3_19300	PWY-7094	fatty acid salvage
TH3_19300	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TH3_19300	PWY-735	jasmonic acid biosynthesis
TH3_19300	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TH3_19300	PWY-7606	docosahexaenoate biosynthesis III (mammals)
TH3_19300	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
TH3_19300	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
TH3_19300	PWY-7726	TH3_19300
TH3_19300	PWY-7778	TH3_19300
TH3_19300	PWY-7779	TH3_19300
TH3_19380	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TH3_19380	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TH3_19425	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_19600	PWY-4381	fatty acid biosynthesis initiation I
TH3_19600	PWY-5743	3-hydroxypropanoate cycle
TH3_19600	PWY-5744	glyoxylate assimilation
TH3_19600	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TH3_19600	PWY-6722	candicidin biosynthesis
TH3_19605	PWY-2161	folate polyglutamylation
TH3_19620	PWY-2941	L-lysine biosynthesis II
TH3_19620	PWY-2942	L-lysine biosynthesis III
TH3_19620	PWY-5097	L-lysine biosynthesis VI
TH3_19660	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
TH3_19805	PWY-3821	galactose degradation III
TH3_19805	PWY-6317	galactose degradation I (Leloir pathway)
TH3_19805	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
TH3_19805	PWY-6527	stachyose degradation
TH3_19805	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
TH3_19805	PWY-7344	UDP-D-galactose biosynthesis
TH3_19815	PWY-7805	TH3_19815
TH3_19815	PWY-7807	TH3_19815
TH3_19850	PWY-1281	sulfoacetaldehyde degradation I
TH3_19850	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TH3_19850	PWY-5482	pyruvate fermentation to acetate II
TH3_19850	PWY-5485	pyruvate fermentation to acetate IV
TH3_19850	PWY-5497	purine nucleobases degradation II (anaerobic)
TH3_19850	PWY-6637	sulfolactate degradation II
TH3_19850	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TH3_19885	PWY-6168	flavin biosynthesis III (fungi)
TH3_19885	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TH3_19885	PWY-7991	TH3_19885
TH3_19895	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TH3_19900	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TH3_19900	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TH3_19900	PWY-6897	thiamin salvage II
TH3_19900	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TH3_19900	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TH3_19900	PWY-7356	thiamin salvage IV (yeast)
TH3_19900	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TH3_20000	PWY-7980	TH3_20000
TH3_20035	PWY-7851	TH3_20035
TH3_20040	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_20055	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TH3_20055	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TH3_20055	PWY-7766	TH3_20055
TH3_20150	PWY-2582	brassinosteroid biosynthesis II
TH3_20150	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TH3_20150	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TH3_20150	PWY-6948	sitosterol degradation to androstenedione
TH3_20150	PWY-699	brassinosteroid biosynthesis I
TH3_20150	PWY-7299	progesterone biosynthesis
TH3_20250	PWY-6610	adenine and adenosine salvage IV
TH3_20280	PWY-7851	TH3_20280
TH3_20295	PWY-6936	seleno-amino acid biosynthesis
TH3_20330	PWY-3121	linamarin degradation
TH3_20330	PWY-5176	coumarin biosynthesis (via 2-coumarate)
TH3_20330	PWY-6002	lotaustralin degradation
TH3_20330	PWY-6788	cellulose degradation II (fungi)
TH3_20330	PWY-7091	linustatin bioactivation
TH3_20330	PWY-7092	neolinustatin bioactivation
TH3_20330	PWY-7913	TH3_20330
TH3_20355	PWY-6454	vancomycin resistance I
TH3_20355	PWY-6455	vancomycin resistance II
TH3_20420	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TH3_20420	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
TH3_20460	PWY-5874	heme degradation
TH3_20570	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
TH3_20605	PWY-5194	siroheme biosynthesis
TH3_20605	PWY-5196	factor 430 biosynthesis
TH3_20605	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_20610	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_20620	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_20630	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_20650	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
TH3_20660	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TH3_20660	PWY-6269	adenosylcobalamin salvage from cobinamide II
TH3_20660	PWY-7964	TH3_20660
TH3_20660	PWY-7965	TH3_20660
TH3_20660	PWY-7966	TH3_20660
TH3_20660	PWY-7967	TH3_20660
TH3_20660	PWY-7968	TH3_20660
TH3_20660	PWY-7969	TH3_20660
TH3_20660	PWY-7970	TH3_20660
TH3_20665	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TH3_20665	PWY-6269	adenosylcobalamin salvage from cobinamide II
TH3_20665	PWY-7961	TH3_20665
TH3_20665	PWY-7963	TH3_20665
TH3_20665	PWY-7964	TH3_20665
TH3_20665	PWY-7965	TH3_20665
TH3_20665	PWY-7966	TH3_20665
TH3_20665	PWY-7967	TH3_20665
TH3_20665	PWY-7968	TH3_20665
TH3_20665	PWY-7969	TH3_20665
TH3_20665	PWY-7970	TH3_20665
TH3_20665	PWY-7975	TH3_20665
TH3_20680	PWY-6269	adenosylcobalamin salvage from cobinamide II
TH3_20680	PWY-7962	TH3_20680
TH3_20680	PWY-7971	TH3_20680
TH3_20680	PWY-7972	TH3_20680
TH3_20755	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_20760	PWY-5194	siroheme biosynthesis
TH3_20760	PWY-5196	factor 430 biosynthesis
TH3_20760	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TH3_20835	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TH3_20840	PWY-7205	CMP phosphorylation
TH3_20865	PWY-5686	UMP biosynthesis
TH3_20865	PWY-7790	TH3_20865
TH3_20865	PWY-7791	TH3_20865
TH3_21413	PWY-5162	2-oxopentenoate degradation
TH3_21413	PWY-5436	L-threonine degradation IV
TH3_21413	PWY-5480	pyruvate fermentation to ethanol I
TH3_21413	PWY-6587	pyruvate fermentation to ethanol III
TH3_21413	PWY-7085	triethylamine degradation
TH3_21413	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TH3_21418	PWY-5162	2-oxopentenoate degradation