locus-tag class description LP316_00020 PF01012 Electron transfer flavoprotein domain LP316_00025 PF01012 Electron transfer flavoprotein domain LP316_00025 PF00766 Electron transfer flavoprotein FAD-binding domain LP316_00030 PF01253 Translation initiation factor SUI1 LP316_00035 PF00072 Response regulator receiver domain LP316_00040 PF00884 Sulfatase LP316_00040 PF16385 Domain of unknown function LP316_00050 PF01926 50S ribosome-binding GTPase LP316_00085 PF01066 CDP-alcohol phosphatidyltransferase LP316_00095 PF00004 ATPase family associated with various cellular activities (AAA) LP316_00095 PF17871 AAA lid domain LP316_00095 PF02861 Clp amino terminal domain, pathogenicity island component LP316_00095 PF10431 C-terminal, D2-small domain, of ClpB protein LP316_00095 PF07724 AAA domain (Cdc48 subfamily) LP316_00100 PF02578 Multi-copper polyphenol oxidoreductase laccase LP316_00105 PF01479 S4 domain LP316_00105 PF00849 RNA pseudouridylate synthase LP316_00110 PF13525 Outer membrane lipoprotein LP316_00115 PF00543 Nitrogen regulatory protein P-II LP316_00120 PF02540 NAD synthase LP316_00125 PF07963 Prokaryotic N-terminal methylation motif LP316_00125 PF00114 Pilin (bacterial filament) LP316_00135 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LP316_00135 PF07963 Prokaryotic N-terminal methylation motif LP316_00160 PF02401 LytB protein LP316_00165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_00170 PF01252 Signal peptidase (SPase) II LP316_00175 PF06827 Zinc finger found in FPG and IleRS LP316_00175 PF08264 Anticodon-binding domain of tRNA LP316_00175 PF00133 tRNA synthetases class I (I, L, M and V) LP316_00180 PF01687 Riboflavin kinase LP316_00180 PF06574 FAD synthetase LP316_00185 PF03023 Lipid II flippase MurJ LP316_00190 PF01649 Ribosomal protein S20 LP316_00205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_00205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_00205 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_00210 PF02673 Bacitracin resistance protein BacA LP316_00215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LP316_00220 PF02152 Dihydroneopterin aldolase LP316_00225 PF02660 Glycerol-3-phosphate acyltransferase LP316_00230 PF00814 Glycoprotease family LP316_00235 PF01165 Ribosomal protein S21 LP316_00240 PF09424 Yqey-like protein LP316_00245 PF01807 CHC2 zinc finger LP316_00245 PF08278 DNA primase DnaG DnaB-binding LP316_00245 PF10410 DnaB-helicase binding domain of primase LP316_00245 PF08275 DNA primase catalytic core, N-terminal domain LP316_00250 PF04539 Sigma-70 region 3 LP316_00250 PF04542 Sigma-70 region 2 LP316_00250 PF04545 Sigma-70, region 4 LP316_00250 PF00140 Sigma-70 factor, region 1.2 LP316_00250 PF03979 Sigma-70 factor, region 1.1 LP316_00250 PF04546 Sigma-70, non-essential region LP316_00260 PF00753 Metallo-beta-lactamase superfamily LP316_00260 PF14864 Alkyl sulfatase C-terminal LP316_00260 PF14863 Alkyl sulfatase dimerisation LP316_00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_00265 PF03466 LysR substrate binding domain LP316_00275 PF04545 Sigma-70, region 4 LP316_00275 PF00140 Sigma-70 factor, region 1.2 LP316_00275 PF04542 Sigma-70 region 2 LP316_00275 PF04539 Sigma-70 region 3 LP316_00280 PF01476 LysM domain LP316_00280 PF01551 Peptidase family M23 LP316_00285 PF09335 SNARE associated Golgi protein LP316_00295 PF01975 Survival protein SurE LP316_00300 PF01142 tRNA pseudouridine synthase D (TruD) LP316_00305 PF02542 YgbB family LP316_00310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LP316_00315 PF04977 Septum formation initiator LP316_00325 PF03466 LysR substrate binding domain LP316_00325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_00330 PF02903 Alpha amylase, N-terminal ig-like domain LP316_00330 PF00128 Alpha amylase, catalytic domain LP316_00330 PF16657 Maltogenic Amylase, C-terminal domain LP316_00335 PF00248 Aldo/keto reductase family LP316_00340 PF00593 TonB dependent receptor LP316_00340 PF07715 TonB-dependent Receptor Plug Domain LP316_00350 PF00561 alpha/beta hydrolase fold LP316_00365 PF00107 Zinc-binding dehydrogenase LP316_00365 PF16884 N-terminal domain of oxidoreductase LP316_00375 PF00501 AMP-binding enzyme LP316_00375 PF13193 AMP-binding enzyme C-terminal domain LP316_00380 PF00106 short chain dehydrogenase LP316_00385 PF01575 MaoC like domain LP316_00390 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_00390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_00390 PF12806 Acetyl-CoA dehydrogenase C-terminal like LP316_00390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_00405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_00405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_00405 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_00410 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_00410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LP316_00425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_00425 PF03466 LysR substrate binding domain LP316_00435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LP316_00435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LP316_00450 PF00043 Glutathione S-transferase, C-terminal domain LP316_00450 PF13417 Glutathione S-transferase, N-terminal domain LP316_00470 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LP316_00485 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LP316_00490 PF02514 CobN/Magnesium Chelatase LP316_00490 PF11965 Domain of unknown function (DUF3479) LP316_00505 PF07715 TonB-dependent Receptor Plug Domain LP316_00505 PF04886 PT repeat LP316_00505 PF00593 TonB dependent receptor LP316_00510 PF01743 Poly A polymerase head domain LP316_00510 PF12627 Probable RNA and SrmB- binding site of polymerase A LP316_00510 PF01966 HD domain LP316_00525 PF02517 CPBP intramembrane metalloprotease LP316_00530 PF03412 Peptidase C39 family LP316_00530 PF00664 ABC transporter transmembrane region LP316_00530 PF00005 ABC transporter LP316_00570 PF12833 Helix-turn-helix domain LP316_00570 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LP316_00575 PF01751 Toprim domain LP316_00575 PF01131 DNA topoisomerase LP316_00585 PF07715 TonB-dependent Receptor Plug Domain LP316_00585 PF00593 TonB dependent receptor LP316_00605 PF12792 CSS motif domain associated with EAL LP316_00605 PF00563 EAL domain LP316_00610 PF13402 Peptidase M60, enhancin and enhancin-like LP316_00610 PF18650 Immunomodulating metalloprotease N-terminal domain LP316_00610 PF18642 Immunomodulating metalloprotease helical domain LP316_00630 PF03739 Lipopolysaccharide export system permease LptF/LptG LP316_00635 PF03739 Lipopolysaccharide export system permease LptF/LptG LP316_00640 PF02789 Cytosol aminopeptidase family, N-terminal domain LP316_00640 PF00883 Cytosol aminopeptidase family, catalytic domain LP316_00650 PF00133 tRNA synthetases class I (I, L, M and V) LP316_00650 PF10458 Valyl tRNA synthetase tRNA binding arm LP316_00650 PF08264 Anticodon-binding domain of tRNA LP316_00655 PF00313 'Cold-shock' DNA-binding domain LP316_00660 PF00762 Ferrochelatase LP316_00665 PF00255 Glutathione peroxidase LP316_00670 PF03918 Cytochrome C biogenesis protein LP316_00675 PF03918 Cytochrome C biogenesis protein LP316_00680 PF08534 Redoxin LP316_00685 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LP316_00685 PF01578 Cytochrome C assembly protein LP316_00690 PF00005 ABC transporter LP316_00695 PF03379 CcmB protein LP316_00700 PF01578 Cytochrome C assembly protein LP316_00705 PF04995 Heme exporter protein D (CcmD) LP316_00710 PF03100 CcmE LP316_00720 PF06434 Aconitate hydratase 2 N-terminus LP316_00720 PF00330 Aconitase family (aconitate hydratase) LP316_00720 PF11791 Aconitate B N-terminal domain LP316_00725 PF00330 Aconitase family (aconitate hydratase) LP316_00725 PF06434 Aconitate hydratase 2 N-terminus LP316_00725 PF11791 Aconitate B N-terminal domain LP316_00735 PF07676 WD40-like Beta Propeller Repeat LP316_00735 PF00326 Prolyl oligopeptidase family LP316_00740 PF07715 TonB-dependent Receptor Plug Domain LP316_00740 PF00593 TonB dependent receptor LP316_00745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LP316_00745 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_00750 PF02817 e3 binding domain LP316_00750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LP316_00750 PF00364 Biotin-requiring enzyme LP316_00755 PF00456 Transketolase, thiamine diphosphate binding domain LP316_00755 PF17831 Pyruvate dehydrogenase E1 component middle domain LP316_00760 PF07729 FCD domain LP316_00760 PF00392 Bacterial regulatory proteins, gntR family LP316_00770 PF01510 N-acetylmuramoyl-L-alanine amidase LP316_00780 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LP316_00780 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LP316_00790 PF00437 Type II/IV secretion system protein LP316_00790 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LP316_00795 PF00482 Type II secretion system (T2SS), protein F LP316_00800 PF06750 Bacterial Peptidase A24 N-terminal domain LP316_00800 PF01478 Type IV leader peptidase family LP316_00805 PF01121 Dephospho-CoA kinase LP316_00810 PF07072 Cell division protein LP316_00815 PF03884 DNA gyrase inhibitor YacG LP316_00820 PF00293 NUDIX domain LP316_00825 PF07516 SecA Wing and Scaffold domain LP316_00825 PF01043 SecA preprotein cross-linking domain LP316_00825 PF02810 SEC-C motif LP316_00825 PF07517 SecA DEAD-like domain LP316_00830 PF01551 Peptidase family M23 LP316_00840 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LP316_00845 PF12327 FtsZ family, C-terminal domain LP316_00845 PF00091 Tubulin/FtsZ family, GTPase domain LP316_00850 PF02491 SHS2 domain inserted in FTSA LP316_00855 PF03799 Cell division protein FtsQ LP316_00855 PF08478 POTRA domain, FtsQ-type LP316_00860 PF01820 D-ala D-ala ligase N-terminus LP316_00860 PF07478 D-ala D-ala ligase C-terminus LP316_00865 PF08245 Mur ligase middle domain LP316_00865 PF01225 Mur ligase family, catalytic domain LP316_00865 PF02875 Mur ligase family, glutamate ligase domain LP316_00870 PF04101 Glycosyltransferase family 28 C-terminal domain LP316_00870 PF03033 Glycosyltransferase family 28 N-terminal domain LP316_00875 PF01098 Cell cycle protein LP316_00880 PF02875 Mur ligase family, glutamate ligase domain LP316_00880 PF08245 Mur ligase middle domain LP316_00885 PF00953 Glycosyl transferase family 4 LP316_00885 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LP316_00890 PF02875 Mur ligase family, glutamate ligase domain LP316_00890 PF08245 Mur ligase middle domain LP316_00890 PF01225 Mur ligase family, catalytic domain LP316_00895 PF01225 Mur ligase family, catalytic domain LP316_00895 PF08245 Mur ligase middle domain LP316_00895 PF02875 Mur ligase family, glutamate ligase domain LP316_00900 PF03717 Penicillin-binding Protein dimerisation domain LP316_00900 PF00905 Penicillin binding protein transpeptidase domain LP316_00905 PF04999 Cell division protein FtsL LP316_00910 PF01795 MraW methylase family LP316_00915 PF02381 MraZ protein, putative antitoxin-like LP316_00925 PF00005 ABC transporter LP316_00955 PF02780 Transketolase, C-terminal domain LP316_00955 PF02779 Transketolase, pyrimidine binding domain LP316_00960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_00960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_00960 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_00965 PF03466 LysR substrate binding domain LP316_00985 PF00378 Enoyl-CoA hydratase/isomerase LP316_01000 PF04012 PspA/IM30 family LP316_01020 PF01207 Dihydrouridine synthase (Dus) LP316_01025 PF01475 Ferric uptake regulator family LP316_01040 PF01894 Uncharacterised protein family UPF0047 LP316_01045 PF07715 TonB-dependent Receptor Plug Domain LP316_01045 PF00593 TonB dependent receptor LP316_01050 PF01497 Periplasmic binding protein LP316_01055 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LP316_01055 PF12557 Cob(I)alamin adenosyltransferase N terminal LP316_01060 PF01032 FecCD transport family LP316_01065 PF00005 ABC transporter LP316_01070 PF05552 Conserved TM helix LP316_01070 PF00924 Mechanosensitive ion channel LP316_01090 PF00005 ABC transporter LP316_01090 PF13732 Domain of unknown function (DUF4162) LP316_01125 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LP316_01140 PF03544 Gram-negative bacterial TonB protein C-terminal LP316_01155 PF00210 Ferritin-like domain LP316_01170 PF00072 Response regulator receiver domain LP316_01170 PF07494 Two component regulator propeller LP316_01170 PF12833 Helix-turn-helix domain LP316_01170 PF00512 His Kinase A (phospho-acceptor) domain LP316_01170 PF07495 Y_Y_Y domain LP316_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_01180 PF00082 Subtilase family LP316_01185 PF00082 Subtilase family LP316_01185 PF05922 Peptidase inhibitor I9 LP316_01190 PF05922 Peptidase inhibitor I9 LP316_01190 PF00082 Subtilase family LP316_01190 PF05922 Peptidase inhibitor I9 LP316_01190 PF00082 Subtilase family LP316_01195 PF05649 Peptidase family M13 LP316_01195 PF01431 Peptidase family M13 LP316_01205 PF00375 Sodium:dicarboxylate symporter family LP316_01210 PF02690 Na+/Pi-cotransporter LP316_01215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LP316_01215 PF00753 Metallo-beta-lactamase superfamily LP316_01215 PF10996 Beta-Casp domain LP316_01220 PF03641 Possible lysine decarboxylase LP316_01220 PF11892 Domain of unknown function (DUF3412) LP316_01220 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LP316_01225 PF01047 MarR family LP316_01235 PF08335 GlnD PII-uridylyltransferase LP316_01235 PF01966 HD domain LP316_01235 PF01909 Nucleotidyltransferase domain LP316_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_01265 PF07730 Histidine kinase LP316_01270 PF00196 Bacterial regulatory proteins, luxR family LP316_01270 PF00072 Response regulator receiver domain LP316_01275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LP316_01280 PF04348 LppC putative lipoprotein LP316_01285 PF02021 Uncharacterised protein family UPF0102 LP316_01290 PF13580 SIS domain LP316_01295 PF04972 BON domain LP316_01300 PF00990 Diguanylate cyclase, GGDEF domain LP316_01300 PF00563 EAL domain LP316_01300 PF03707 Bacterial signalling protein N terminal repeat LP316_01310 PF01507 Phosphoadenosine phosphosulfate reductase family LP316_01315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LP316_01315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LP316_01320 PF00175 Oxidoreductase NAD-binding domain LP316_01320 PF00258 Flavodoxin LP316_01320 PF00667 FAD binding domain LP316_01335 PF13417 Glutathione S-transferase, N-terminal domain LP316_01335 PF00043 Glutathione S-transferase, C-terminal domain LP316_01340 PF00884 Sulfatase LP316_01345 PF00842 Alanine racemase, C-terminal domain LP316_01345 PF01168 Alanine racemase, N-terminal domain LP316_01350 PF00772 DnaB-like helicase N terminal domain LP316_01350 PF03796 DnaB-like helicase C terminal domain LP316_01370 PF01197 Ribosomal protein L31 LP316_01380 PF00271 Helicase conserved C-terminal domain LP316_01380 PF00270 DEAD/DEAH box helicase LP316_01380 PF17764 3′ DNA-binding domain (3′BD) LP316_01380 PF18074 Primosomal protein N C-terminal domain LP316_01380 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LP316_01385 PF05036 Sporulation related domain LP316_01390 PF00227 Proteasome subunit LP316_01395 PF00004 ATPase family associated with various cellular activities (AAA) LP316_01395 PF07724 AAA domain (Cdc48 subfamily) LP316_01395 PF10431 C-terminal, D2-small domain, of ClpB protein LP316_01400 PF12729 Four helix bundle sensory module for signal transduction LP316_01400 PF00672 HAMP domain LP316_01400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_01405 PF03707 Bacterial signalling protein N terminal repeat LP316_01405 PF00563 EAL domain LP316_01405 PF00990 Diguanylate cyclase, GGDEF domain LP316_01410 PF03737 Aldolase/RraA LP316_01420 PF01979 Amidohydrolase family LP316_01435 PF01145 SPFH domain / Band 7 family LP316_01440 PF01145 SPFH domain / Band 7 family LP316_01440 PF16200 C-terminal region of band_7 LP316_01450 PF01370 NAD dependent epimerase/dehydratase family LP316_01460 PF00583 Acetyltransferase (GNAT) family LP316_01460 PF09500 Putative thioesterase (yiiD_Cterm) LP316_01470 PF02580 D-Tyr-tRNA(Tyr) deacylase LP316_01475 PF00561 alpha/beta hydrolase fold LP316_01480 PF03631 Virulence factor BrkB LP316_01505 PF00679 Elongation factor G C-terminus LP316_01505 PF00009 Elongation factor Tu GTP binding domain LP316_01505 PF03144 Elongation factor Tu domain 2 LP316_01510 PF03951 Glutamine synthetase, beta-Grasp domain LP316_01510 PF00120 Glutamine synthetase, catalytic domain LP316_01520 PF00512 His Kinase A (phospho-acceptor) domain LP316_01520 PF00989 PAS fold LP316_01520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_01525 PF00072 Response regulator receiver domain LP316_01525 PF00158 Sigma-54 interaction domain LP316_01525 PF02954 Bacterial regulatory protein, Fis family LP316_01535 PF00152 tRNA synthetases class II (D, K and N) LP316_01570 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LP316_01575 PF05958 tRNA (Uracil-5-)-methyltransferase LP316_01580 PF00440 Bacterial regulatory proteins, tetR family LP316_01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_01590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LP316_01605 PF00563 EAL domain LP316_01605 PF00990 Diguanylate cyclase, GGDEF domain LP316_01605 PF13426 PAS domain LP316_01615 PF03171 2OG-Fe(II) oxygenase superfamily LP316_01615 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LP316_01620 PF00873 AcrB/AcrD/AcrF family LP316_01635 PF17783 CvfB-like winged helix domain LP316_01635 PF13509 S1 domain LP316_01640 PF07715 TonB-dependent Receptor Plug Domain LP316_01640 PF00593 TonB dependent receptor LP316_01650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LP316_01650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LP316_01660 PF05175 Methyltransferase small domain LP316_01660 PF08468 Methyltransferase small domain N-terminal LP316_01665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_01665 PF00497 Bacterial extracellular solute-binding proteins, family 3 LP316_01665 PF00512 His Kinase A (phospho-acceptor) domain LP316_01670 PF00072 Response regulator receiver domain LP316_01670 PF00486 Transcriptional regulatory protein, C terminal LP316_01680 PF02649 Type I GTP cyclohydrolase folE2 LP316_01685 PF04898 Glutamate synthase central domain LP316_01685 PF00310 Glutamine amidotransferases class-II LP316_01685 PF01645 Conserved region in glutamate synthase LP316_01685 PF01493 GXGXG motif LP316_01690 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_01690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LP316_01695 PF00106 short chain dehydrogenase LP316_01700 PF00108 Thiolase, N-terminal domain LP316_01700 PF02803 Thiolase, C-terminal domain LP316_01720 PF00593 TonB dependent receptor LP316_01720 PF07715 TonB-dependent Receptor Plug Domain LP316_01725 PF00072 Response regulator receiver domain LP316_01725 PF00196 Bacterial regulatory proteins, luxR family LP316_01730 PF02702 Osmosensitive K+ channel His kinase sensor domain LP316_01730 PF13493 Domain of unknown function (DUF4118) LP316_01730 PF13492 GAF domain LP316_01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_01730 PF00512 His Kinase A (phospho-acceptor) domain LP316_01740 PF07859 alpha/beta hydrolase fold LP316_01750 PF01048 Phosphorylase superfamily LP316_01760 PF00581 Rhodanese-like domain LP316_01765 PF03458 UPF0126 domain LP316_01780 PF00579 tRNA synthetases class I (W and Y) LP316_01785 PF01551 Peptidase family M23 LP316_01785 PF01476 LysM domain LP316_01790 PF03702 Anhydro-N-acetylmuramic acid kinase LP316_01805 PF00436 Single-strand binding protein family LP316_01815 PF01979 Amidohydrolase family LP316_01825 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_01825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LP316_01835 PF07690 Major Facilitator Superfamily LP316_01840 PF17760 UvrA interaction domain LP316_01840 PF17755 UvrA DNA-binding domain LP316_01840 PF00005 ABC transporter LP316_01865 PF00326 Prolyl oligopeptidase family LP316_01865 PF07676 WD40-like Beta Propeller Repeat LP316_01870 PF02441 Flavoprotein LP316_01875 PF01225 Mur ligase family, catalytic domain LP316_01875 PF02875 Mur ligase family, glutamate ligase domain LP316_01875 PF08245 Mur ligase middle domain LP316_01880 PF03473 MOSC domain LP316_01880 PF03476 MOSC N-terminal beta barrel domain LP316_01880 PF00111 2Fe-2S iron-sulfur cluster binding domain LP316_01885 PF03746 LamB/YcsF family LP316_01895 PF02626 Carboxyltransferase domain, subdomain A and B LP316_01905 PF00117 Glutamine amidotransferase class-I LP316_01915 PF00202 Aminotransferase class-III LP316_01920 PF04958 Arginine N-succinyltransferase beta subunit LP316_01925 PF00171 Aldehyde dehydrogenase family LP316_01940 PF02566 OsmC-like protein LP316_01945 PF02675 S-adenosylmethionine decarboxylase LP316_01950 PF00485 Phosphoribulokinase / Uridine kinase family LP316_01955 PF01196 Ribosomal protein L17 LP316_01960 PF01000 RNA polymerase Rpb3/RpoA insert domain LP316_01960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LP316_01960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LP316_01965 PF00163 Ribosomal protein S4/S9 N-terminal domain LP316_01965 PF01479 S4 domain LP316_01970 PF00411 Ribosomal protein S11 LP316_01975 PF00416 Ribosomal protein S13/S18 LP316_01980 PF00444 Ribosomal protein L36 LP316_01985 PF00344 SecY translocase LP316_01990 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LP316_01995 PF00327 Ribosomal protein L30p/L7e LP316_02000 PF00333 Ribosomal protein S5, N-terminal domain LP316_02000 PF03719 Ribosomal protein S5, C-terminal domain LP316_02005 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LP316_02010 PF00347 Ribosomal protein L6 LP316_02015 PF00410 Ribosomal protein S8 LP316_02020 PF00253 Ribosomal protein S14p/S29e LP316_02025 PF00673 ribosomal L5P family C-terminus LP316_02025 PF00281 Ribosomal protein L5 LP316_02030 PF00467 KOW motif LP316_02030 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LP316_02035 PF00238 Ribosomal protein L14p/L23e LP316_02040 PF00366 Ribosomal protein S17 LP316_02045 PF00831 Ribosomal L29 protein LP316_02050 PF00252 Ribosomal protein L16p/L10e LP316_02055 PF07650 KH domain LP316_02055 PF00189 Ribosomal protein S3, C-terminal domain LP316_02060 PF00237 Ribosomal protein L22p/L17e LP316_02065 PF00203 Ribosomal protein S19 LP316_02070 PF03947 Ribosomal Proteins L2, C-terminal domain LP316_02070 PF00181 Ribosomal Proteins L2, RNA binding domain LP316_02075 PF00276 Ribosomal protein L23 LP316_02080 PF00573 Ribosomal protein L4/L1 family LP316_02085 PF00297 Ribosomal protein L3 LP316_02090 PF00338 Ribosomal protein S10p/S20e LP316_02095 PF00512 His Kinase A (phospho-acceptor) domain LP316_02095 PF16527 Two-component sensor protein CpxA, periplasmic domain LP316_02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_02095 PF00672 HAMP domain LP316_02100 PF00486 Transcriptional regulatory protein, C terminal LP316_02100 PF00072 Response regulator receiver domain LP316_02145 PF00009 Elongation factor Tu GTP binding domain LP316_02145 PF03144 Elongation factor Tu domain 2 LP316_02145 PF14492 Elongation Factor G, domain II LP316_02145 PF00679 Elongation factor G C-terminus LP316_02145 PF03764 Elongation factor G, domain IV LP316_02155 PF01479 S4 domain LP316_02155 PF00849 RNA pseudouridylate synthase LP316_02160 PF07715 TonB-dependent Receptor Plug Domain LP316_02160 PF00593 TonB dependent receptor LP316_02170 PF03143 Elongation factor Tu C-terminal domain LP316_02170 PF03144 Elongation factor Tu domain 2 LP316_02170 PF00009 Elongation factor Tu GTP binding domain LP316_02175 PF03144 Elongation factor Tu domain 2 LP316_02175 PF00679 Elongation factor G C-terminus LP316_02175 PF14492 Elongation Factor G, domain II LP316_02175 PF03764 Elongation factor G, domain IV LP316_02175 PF00009 Elongation factor Tu GTP binding domain LP316_02180 PF00177 Ribosomal protein S7p/S5e LP316_02185 PF00164 Ribosomal protein S12/S23 LP316_02190 PF04998 RNA polymerase Rpb1, domain 5 LP316_02190 PF05000 RNA polymerase Rpb1, domain 4 LP316_02190 PF04983 RNA polymerase Rpb1, domain 3 LP316_02190 PF00623 RNA polymerase Rpb1, domain 2 LP316_02190 PF04997 RNA polymerase Rpb1, domain 1 LP316_02195 PF04565 RNA polymerase Rpb2, domain 3 LP316_02195 PF10385 RNA polymerase beta subunit external 1 domain LP316_02195 PF00562 RNA polymerase Rpb2, domain 6 LP316_02195 PF04563 RNA polymerase beta subunit LP316_02195 PF04560 RNA polymerase Rpb2, domain 7 LP316_02195 PF04561 RNA polymerase Rpb2, domain 2 LP316_02200 PF00542 Ribosomal protein L7/L12 C-terminal domain LP316_02200 PF16320 Ribosomal protein L7/L12 dimerisation domain LP316_02205 PF00466 Ribosomal protein L10 LP316_02210 PF00687 Ribosomal protein L1p/L10e family LP316_02215 PF03946 Ribosomal protein L11, N-terminal domain LP316_02215 PF00298 Ribosomal protein L11, RNA binding domain LP316_02220 PF02357 Transcription termination factor nusG LP316_02220 PF00467 KOW motif LP316_02225 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LP316_02235 PF03143 Elongation factor Tu C-terminal domain LP316_02235 PF03144 Elongation factor Tu domain 2 LP316_02235 PF00009 Elongation factor Tu GTP binding domain LP316_02260 PF03309 Type III pantothenate kinase LP316_02265 PF03099 Biotin/lipoate A/B protein ligase family LP316_02265 PF02237 Biotin protein ligase C terminal domain LP316_02265 PF08279 HTH domain LP316_02270 PF01565 FAD binding domain LP316_02270 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LP316_02275 PF13807 G-rich domain on putative tyrosine kinase LP316_02275 PF13614 AAA domain LP316_02275 PF02706 Chain length determinant protein LP316_02310 PF02844 Phosphoribosylglycinamide synthetase, N domain LP316_02310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LP316_02310 PF02843 Phosphoribosylglycinamide synthetase, C domain LP316_02320 PF01808 AICARFT/IMPCHase bienzyme LP316_02320 PF02142 MGS-like domain LP316_02325 PF02954 Bacterial regulatory protein, Fis family LP316_02330 PF01207 Dihydrouridine synthase (Dus) LP316_02340 PF03737 Aldolase/RraA LP316_02345 PF10414 Sirohaem synthase dimerisation region LP316_02345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LP316_02355 PF13180 PDZ domain LP316_02365 PF00579 tRNA synthetases class I (W and Y) LP316_02370 PF00834 Ribulose-phosphate 3 epimerase family LP316_02385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_02385 PF03466 LysR substrate binding domain LP316_02405 PF02661 Fic/DOC family LP316_02425 PF04055 Radical SAM superfamily LP316_02425 PF06969 HemN C-terminal domain LP316_02430 PF01258 Prokaryotic dksA/traR C4-type zinc finger LP316_02455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_02455 PF00672 HAMP domain LP316_02455 PF02743 Cache domain LP316_02460 PF00072 Response regulator receiver domain LP316_02460 PF00672 HAMP domain LP316_02460 PF01627 Hpt domain LP316_02460 PF00512 His Kinase A (phospho-acceptor) domain LP316_02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_02460 PF17149 Periplasmic sensor domain found in signal transduction proteins LP316_02475 PF01979 Amidohydrolase family LP316_02480 PF02634 FdhD/NarQ family LP316_02485 PF00384 Molybdopterin oxidoreductase LP316_02495 PF12801 4Fe-4S binding domain LP316_02495 PF13746 4Fe-4S dicluster domain LP316_02495 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LP316_02500 PF01636 Phosphotransferase enzyme family LP316_02505 PF01323 DSBA-like thioredoxin domain LP316_02525 PF00436 Single-strand binding protein family LP316_02530 PF01979 Amidohydrolase family LP316_02540 PF01145 SPFH domain / Band 7 family LP316_02540 PF15975 Flotillin LP316_02555 PF01726 LexA DNA binding domain LP316_02555 PF00717 Peptidase S24-like LP316_02560 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LP316_02560 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LP316_02565 PF00115 Cytochrome C and Quinol oxidase polypeptide I LP316_02570 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LP316_02575 PF00510 Cytochrome c oxidase subunit III LP316_02595 PF02628 Cytochrome oxidase assembly protein LP316_02600 PF01040 UbiA prenyltransferase family LP316_02605 PF02630 SCO1/SenC LP316_02615 PF01554 MatE LP316_02620 PF01521 Iron-sulphur cluster biosynthesis LP316_02620 PF01106 NifU-like domain LP316_02630 PF00156 Phosphoribosyl transferase domain LP316_02635 PF00561 alpha/beta hydrolase fold LP316_02650 PF00156 Phosphoribosyl transferase domain LP316_02655 PF03725 3' exoribonuclease family, domain 2 LP316_02655 PF01138 3' exoribonuclease family, domain 1 LP316_02670 PF00732 GMC oxidoreductase LP316_02670 PF05199 GMC oxidoreductase LP316_02680 PF12704 MacB-like periplasmic core domain LP316_02680 PF00005 ABC transporter LP316_02680 PF02687 FtsX-like permease family LP316_02685 PF12704 MacB-like periplasmic core domain LP316_02685 PF02687 FtsX-like permease family LP316_02700 PF08340 Domain of unknown function (DUF1732) LP316_02700 PF03755 YicC-like family, N-terminal region LP316_02715 PF13154 Protein of unknown function (DUF3991) LP316_02715 PF01076 Plasmid recombination enzyme LP316_02730 PF00145 C-5 cytosine-specific DNA methylase LP316_02760 PF13657 HipA N-terminal domain LP316_02760 PF07804 HipA-like C-terminal domain LP316_02770 PF00326 Prolyl oligopeptidase family LP316_02775 PF04820 Tryptophan halogenase LP316_02780 PF17674 HHH domain LP316_02780 PF00575 S1 RNA binding domain LP316_02780 PF09371 Tex-like protein N-terminal domain LP316_02780 PF16921 Tex protein YqgF-like domain LP316_02785 PF03449 Transcription elongation factor, N-terminal LP316_02785 PF01272 Transcription elongation factor, GreA/GreB, C-term LP316_02790 PF03880 DbpA RNA binding domain LP316_02790 PF00270 DEAD/DEAH box helicase LP316_02790 PF00271 Helicase conserved C-terminal domain LP316_02810 PF00155 Aminotransferase class I and II LP316_02815 PF00625 Guanylate kinase LP316_02820 PF01192 RNA polymerase Rpb6 LP316_02825 PF02824 TGS domain LP316_02825 PF04607 Region found in RelA / SpoT proteins LP316_02825 PF13291 ACT domain LP316_02830 PF01042 Endoribonuclease L-PSP LP316_02835 PF12105 SpoU, rRNA methylase, C-terminal LP316_02835 PF00588 SpoU rRNA Methylase family LP316_02840 PF17191 RecG wedge domain LP316_02840 PF00270 DEAD/DEAH box helicase LP316_02840 PF00271 Helicase conserved C-terminal domain LP316_02845 PF01209 ubiE/COQ5 methyltransferase family LP316_02855 PF03109 ABC1 family LP316_02860 PF07556 Protein of unknown function (DUF1538) LP316_02865 PF07556 Protein of unknown function (DUF1538) LP316_02880 PF08000 Bacterial PH domain LP316_02885 PF00580 UvrD/REP helicase N-terminal domain LP316_02885 PF13361 UvrD-like helicase C-terminal domain LP316_02890 PF04380 Membrane fusogenic activity LP316_02895 PF00291 Pyridoxal-phosphate dependent enzyme LP316_02895 PF00585 C-terminal regulatory domain of Threonine dehydratase LP316_02900 PF00920 Dehydratase family LP316_02905 PF01063 Amino-transferase class IV LP316_02915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LP316_02915 PF00205 Thiamine pyrophosphate enzyme, central domain LP316_02915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LP316_02920 PF13335 Magnesium chelatase, subunit ChlI C-terminal LP316_02920 PF01078 Magnesium chelatase, subunit ChlI LP316_02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_02925 PF03466 LysR substrate binding domain LP316_02930 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LP316_02930 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LP316_02935 PF00171 Aldehyde dehydrogenase family LP316_02940 PF00696 Amino acid kinase family LP316_02940 PF01472 PUA domain LP316_02945 PF17284 Spermidine synthase tetramerisation domain LP316_02950 PF17810 Arginine decarboxylase helical bundle domain LP316_02950 PF17944 Arginine decarboxylase C-terminal helical extension LP316_02950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LP316_02955 PF01553 Acyltransferase LP316_02960 PF00924 Mechanosensitive ion channel LP316_03000 PF04463 Protein of unknown function (DUF523) LP316_03005 PF00072 Response regulator receiver domain LP316_03005 PF00990 Diguanylate cyclase, GGDEF domain LP316_03015 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LP316_03020 PF00034 Cytochrome c LP316_03025 PF09382 RQC domain LP316_03025 PF00570 HRDC domain LP316_03025 PF00271 Helicase conserved C-terminal domain LP316_03025 PF00270 DEAD/DEAH box helicase LP316_03025 PF16124 RecQ zinc-binding LP316_03030 PF00892 EamA-like transporter family LP316_03035 PF00990 Diguanylate cyclase, GGDEF domain LP316_03035 PF17151 Periplasmic sensor domain LP316_03040 PF00580 UvrD/REP helicase N-terminal domain LP316_03040 PF13361 UvrD-like helicase C-terminal domain LP316_03055 PF01678 Diaminopimelate epimerase LP316_03060 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LP316_03060 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LP316_03065 PF01491 Frataxin-like domain LP316_03070 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LP316_03070 PF03900 Porphobilinogen deaminase, C-terminal domain LP316_03075 PF02602 Uroporphyrinogen-III synthase HemD LP316_03080 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LP316_03095 PF00175 Oxidoreductase NAD-binding domain LP316_03100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LP316_03110 PF07497 Rho termination factor, RNA-binding domain LP316_03110 PF07498 Rho termination factor, N-terminal domain LP316_03110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LP316_03115 PF00085 Thioredoxin LP316_03120 PF00271 Helicase conserved C-terminal domain LP316_03120 PF00270 DEAD/DEAH box helicase LP316_03125 PF02541 Ppx/GppA phosphatase family LP316_03130 PF00490 Delta-aminolevulinic acid dehydratase LP316_03135 PF00072 Response regulator receiver domain LP316_03135 PF00990 Diguanylate cyclase, GGDEF domain LP316_03140 PF01026 TatD related DNase LP316_03150 PF00902 Sec-independent protein translocase protein (TatC) LP316_03155 PF02416 mttA/Hcf106 family LP316_03160 PF02416 mttA/Hcf106 family LP316_03175 PF00990 Diguanylate cyclase, GGDEF domain LP316_03175 PF00563 EAL domain LP316_03175 PF03707 Bacterial signalling protein N terminal repeat LP316_03190 PF00873 AcrB/AcrD/AcrF family LP316_03195 PF04542 Sigma-70 region 2 LP316_03195 PF00140 Sigma-70 factor, region 1.2 LP316_03195 PF04545 Sigma-70, region 4 LP316_03200 PF00563 EAL domain LP316_03200 PF08668 HDOD domain LP316_03205 PF18075 FtsX extracellular domain LP316_03210 PF00005 ABC transporter LP316_03215 PF02881 SRP54-type protein, helical bundle domain LP316_03215 PF00448 SRP54-type protein, GTPase domain LP316_03225 PF04222 Protein of unknown function (DUF416) LP316_03245 PF00892 EamA-like transporter family LP316_03255 PF00501 AMP-binding enzyme LP316_03255 PF13193 AMP-binding enzyme C-terminal domain LP316_03260 PF00171 Aldehyde dehydrogenase family LP316_03265 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LP316_03265 PF12833 Helix-turn-helix domain LP316_03275 PF07044 Protein of unknown function (DUF1329) LP316_03280 PF00589 Phage integrase family LP316_03280 PF13495 Phage integrase, N-terminal SAM-like domain LP316_03335 PF05199 GMC oxidoreductase LP316_03335 PF00732 GMC oxidoreductase LP316_03375 PF00529 HlyD membrane-fusion protein of T1SS LP316_03375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LP316_03380 PF01594 AI-2E family transporter LP316_03395 PF00072 Response regulator receiver domain LP316_03395 PF00486 Transcriptional regulatory protein, C terminal LP316_03400 PF08918 PhoQ Sensor LP316_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_03415 PF11737 Protein of unknown function (DUF3300) LP316_03420 PF01380 SIS domain LP316_03425 PF00455 DeoR C terminal sensor domain LP316_03425 PF08220 DeoR-like helix-turn-helix domain LP316_03430 PF01464 Transglycosylase SLT domain LP316_03430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LP316_03435 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_03435 PF14602 Hexapeptide repeat of succinyl-transferase LP316_03435 PF12804 MobA-like NTP transferase domain LP316_03440 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LP316_03440 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LP316_03445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LP316_03445 PF02874 ATP synthase alpha/beta family, beta-barrel domain LP316_03450 PF00231 ATP synthase LP316_03455 PF00306 ATP synthase alpha/beta chain, C terminal domain LP316_03455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LP316_03455 PF02874 ATP synthase alpha/beta family, beta-barrel domain LP316_03460 PF00213 ATP synthase delta (OSCP) subunit LP316_03465 PF00430 ATP synthase B/B' CF(0) LP316_03470 PF00137 ATP synthase subunit C LP316_03475 PF00119 ATP synthase A chain LP316_03480 PF03899 ATP synthase I chain LP316_03485 PF17762 HTH domain found in ParB protein LP316_03485 PF02195 ParB-like nuclease domain LP316_03490 PF13614 AAA domain LP316_03495 PF02527 rRNA small subunit methyltransferase G LP316_03500 PF13932 GidA associated domain LP316_03500 PF01134 Glucose inhibited division protein A LP316_03505 PF00258 Flavodoxin LP316_03510 PF10396 GTP-binding protein TrmE N-terminus LP316_03510 PF12631 MnmE helical domain LP316_03510 PF01926 50S ribosome-binding GTPase LP316_03515 PF14849 YidC periplasmic domain LP316_03515 PF02096 60Kd inner membrane protein LP316_03520 PF01809 Putative membrane protein insertion efficiency factor LP316_03525 PF00825 Ribonuclease P LP316_03530 PF00468 Ribosomal protein L34 LP316_03535 PF08299 Bacterial dnaA protein helix-turn-helix LP316_03535 PF11638 DnaA N-terminal domain LP316_03535 PF00308 Bacterial dnaA protein LP316_03540 PF02767 DNA polymerase III beta subunit, central domain LP316_03540 PF02768 DNA polymerase III beta subunit, C-terminal domain LP316_03540 PF00712 DNA polymerase III beta subunit, N-terminal domain LP316_03545 PF02463 RecF/RecN/SMC N terminal domain LP316_03550 PF00204 DNA gyrase B LP316_03550 PF00986 DNA gyrase B subunit, carboxyl terminus LP316_03550 PF18053 DNA gyrase B subunit insert domain LP316_03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_03550 PF01751 Toprim domain LP316_03555 PF02091 Glycyl-tRNA synthetase alpha subunit LP316_03560 PF05746 DALR anticodon binding domain LP316_03560 PF02092 Glycyl-tRNA synthetase beta subunit LP316_03565 PF01206 Sulfurtransferase TusA LP316_03575 PF01464 Transglycosylase SLT domain LP316_03575 PF14718 Soluble lytic murein transglycosylase L domain LP316_03580 PF00557 Metallopeptidase family M24 LP316_03585 PF01205 Uncharacterized protein family UPF0029 LP316_03585 PF09186 Domain of unknown function (DUF1949) LP316_03590 PF02386 Cation transport protein LP316_03595 PF02080 TrkA-C domain LP316_03595 PF02254 TrkA-N domain LP316_03600 PF01189 16S rRNA methyltransferase RsmB/F LP316_03600 PF01029 NusB family LP316_03605 PF02911 Formyl transferase, C-terminal domain LP316_03605 PF00551 Formyl transferase LP316_03610 PF01327 Polypeptide deformylase LP316_03615 PF01476 LysM domain LP316_03620 PF02481 DNA recombination-mediator protein A LP316_03620 PF17782 DprA winged helix domain LP316_03625 PF04361 Protein of unknown function (DUF494) LP316_03630 PF01396 Topoisomerase DNA binding C4 zinc finger LP316_03630 PF01131 DNA topoisomerase LP316_03630 PF01751 Toprim domain LP316_03635 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LP316_03635 PF02222 ATP-grasp domain LP316_03640 PF00731 AIR carboxylase LP316_03645 PF13193 AMP-binding enzyme C-terminal domain LP316_03645 PF00501 AMP-binding enzyme LP316_03650 PF01300 Telomere recombination LP316_03655 PF01218 Coproporphyrinogen III oxidase LP316_03660 PF03922 OmpW family LP316_03665 PF01488 Shikimate / quinate 5-dehydrogenase LP316_03665 PF08501 Shikimate dehydrogenase substrate binding domain LP316_03665 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LP316_03675 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_03710 PF00486 Transcriptional regulatory protein, C terminal LP316_03710 PF00072 Response regulator receiver domain LP316_03715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_03715 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_03715 PF18158 Adaptive response protein AidB N-terminal domain LP316_03720 PF00326 Prolyl oligopeptidase family LP316_03720 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LP316_03725 PF07694 5TMR of 5TMR-LYT LP316_03725 PF00990 Diguanylate cyclase, GGDEF domain LP316_03735 PF00210 Ferritin-like domain LP316_03740 PF08534 Redoxin LP316_03745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_03745 PF00672 HAMP domain LP316_03745 PF02743 Cache domain LP316_03750 PF04445 Putative SAM-dependent methyltransferase LP316_03760 PF01432 Peptidase family M3 LP316_03765 PF00990 Diguanylate cyclase, GGDEF domain LP316_03765 PF00563 EAL domain LP316_03765 PF03707 Bacterial signalling protein N terminal repeat LP316_03770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LP316_03770 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_03775 PF01367 5'-3' exonuclease, C-terminal SAM fold LP316_03775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LP316_03775 PF00476 DNA polymerase family A LP316_03775 PF01612 3'-5' exonuclease LP316_03785 PF03544 Gram-negative bacterial TonB protein C-terminal LP316_03790 PF04542 Sigma-70 region 2 LP316_03790 PF08281 Sigma-70, region 4 LP316_03820 PF00005 ABC transporter LP316_03825 PF00144 Beta-lactamase LP316_03830 PF12706 Beta-lactamase superfamily domain LP316_03835 PF12697 Alpha/beta hydrolase family LP316_03845 PF03006 Haemolysin-III related LP316_03855 PF02417 Chromate transporter LP316_03860 PF01926 50S ribosome-binding GTPase LP316_03870 PF00034 Cytochrome c LP316_03880 PF04403 Paraquat-inducible protein A LP316_03885 PF02470 MlaD protein LP316_03890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LP316_03890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LP316_03895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_03895 PF08447 PAS fold LP316_03925 PF01546 Peptidase family M20/M25/M40 LP316_03925 PF07687 Peptidase dimerisation domain LP316_03930 PF00440 Bacterial regulatory proteins, tetR family LP316_03935 PF02441 Flavoprotein LP316_03935 PF04127 DNA / pantothenate metabolism flavoprotein LP316_03940 PF04002 RadC-like JAB domain LP316_03960 PF00830 Ribosomal L28 family LP316_03965 PF00471 Ribosomal protein L33 LP316_03975 PF06827 Zinc finger found in FPG and IleRS LP316_03975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LP316_03975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LP316_03980 PF01467 Cytidylyltransferase-like LP316_03990 PF00440 Bacterial regulatory proteins, tetR family LP316_03990 PF08360 QacR-like protein, C-terminal region LP316_04005 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LP316_04010 PF00155 Aminotransferase class I and II LP316_04015 PF08240 Alcohol dehydrogenase GroES-like domain LP316_04015 PF00107 Zinc-binding dehydrogenase LP316_04020 PF00581 Rhodanese-like domain LP316_04025 PF01694 Rhomboid family LP316_04025 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LP316_04035 PF01554 MatE LP316_04040 PF04345 Chorismate lyase LP316_04045 PF01040 UbiA prenyltransferase family LP316_04055 PF01553 Acyltransferase LP316_04070 PF00873 AcrB/AcrD/AcrF family LP316_04075 PF17203 Single cache domain 3 LP316_04075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_04075 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LP316_04080 PF00158 Sigma-54 interaction domain LP316_04080 PF00072 Response regulator receiver domain LP316_04080 PF02954 Bacterial regulatory protein, Fis family LP316_04090 PF13401 AAA domain LP316_04090 PF01471 Putative peptidoglycan binding domain LP316_04100 PF13614 AAA domain LP316_04110 PF02563 Polysaccharide biosynthesis/export protein LP316_04110 PF10531 SLBB domain LP316_04110 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LP316_04115 PF02397 Bacterial sugar transferase LP316_04120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LP316_04120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LP316_04125 PF16363 GDP-mannose 4,6 dehydratase LP316_04140 PF00534 Glycosyl transferases group 1 LP316_04140 PF13439 Glycosyltransferase Family 4 LP316_04145 PF00733 Asparagine synthase LP316_04145 PF13537 Glutamine amidotransferase domain LP316_04155 PF01522 Polysaccharide deacetylase LP316_04170 PF06426 Serine acetyltransferase, N-terminal LP316_04170 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_04200 PF00581 Rhodanese-like domain LP316_04200 PF00899 ThiF family LP316_04220 PF04748 Divergent polysaccharide deacetylase LP316_04225 PF01551 Peptidase family M23 LP316_04230 PF01676 Metalloenzyme superfamily LP316_04230 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LP316_04235 PF00581 Rhodanese-like domain LP316_04240 PF00462 Glutaredoxin LP316_04245 PF02556 Preprotein translocase subunit SecB LP316_04250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LP316_04250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LP316_04255 PF00588 SpoU rRNA Methylase family LP316_04260 PF16916 Dimerisation domain of Zinc Transporter LP316_04260 PF01545 Cation efflux family LP316_04265 PF12146 Serine aminopeptidase, S33 LP316_04285 PF02666 Phosphatidylserine decarboxylase LP316_04290 PF03193 RsgA GTPase LP316_04295 PF00929 Exonuclease LP316_04310 PF08331 Domain of unknown function (DUF1730) LP316_04315 PF03853 YjeF-related protein N-terminus LP316_04315 PF01256 Carbohydrate kinase LP316_04320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LP316_04325 PF01520 N-acetylmuramoyl-L-alanine amidase LP316_04330 PF01119 DNA mismatch repair protein, C-terminal domain LP316_04330 PF08676 MutL C terminal dimerisation domain LP316_04340 PF17209 Hfq protein LP316_04345 PF16360 GTP-binding GTPase Middle Region LP316_04345 PF01926 50S ribosome-binding GTPase LP316_04345 PF13167 GTP-binding GTPase N-terminal LP316_04350 PF12221 Bacterial membrane protein N terminal LP316_04350 PF01145 SPFH domain / Band 7 family LP316_04355 PF01145 SPFH domain / Band 7 family LP316_04365 PF00709 Adenylosuccinate synthetase LP316_04370 PF03949 Malic enzyme, NAD binding domain LP316_04370 PF00390 Malic enzyme, N-terminal domain LP316_04375 PF01340 Met Apo-repressor, MetJ LP316_04380 PF01053 Cys/Met metabolism PLP-dependent enzyme LP316_04385 PF00696 Amino acid kinase family LP316_04385 PF00742 Homoserine dehydrogenase LP316_04385 PF03447 Homoserine dehydrogenase, NAD binding domain LP316_04395 PF02774 Semialdehyde dehydrogenase, dimerisation domain LP316_04395 PF01118 Semialdehyde dehydrogenase, NAD binding domain LP316_04400 PF00696 Amino acid kinase family LP316_04405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LP316_04405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LP316_04410 PF00764 Arginosuccinate synthase LP316_04415 PF00583 Acetyltransferase (GNAT) family LP316_04415 PF00206 Lyase LP316_04415 PF14698 Argininosuccinate lyase C-terminal LP316_04420 PF00696 Amino acid kinase family LP316_04420 PF00583 Acetyltransferase (GNAT) family LP316_04425 PF00128 Alpha amylase, catalytic domain LP316_04445 PF17092 Penicillin-binding protein OB-like domain LP316_04445 PF00905 Penicillin binding protein transpeptidase domain LP316_04445 PF00912 Transglycosylase LP316_04450 PF11104 Type IV pilus assembly protein PilM; LP316_04460 PF04350 Pilus assembly protein, PilO LP316_04470 PF07660 Secretin and TonB N terminus short domain LP316_04470 PF11741 AMIN domain LP316_04470 PF03958 Bacterial type II/III secretion system short domain LP316_04470 PF00263 Bacterial type II and III secretion system protein LP316_04475 PF01202 Shikimate kinase LP316_04480 PF01761 3-dehydroquinate synthase LP316_04490 PF02086 D12 class N6 adenine-specific DNA methyltransferase LP316_04510 PF02719 Polysaccharide biosynthesis protein LP316_04515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LP316_04520 PF02397 Bacterial sugar transferase LP316_04525 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_04535 PF13439 Glycosyltransferase Family 4 LP316_04535 PF00534 Glycosyl transferases group 1 LP316_04550 PF00534 Glycosyl transferases group 1 LP316_04550 PF13439 Glycosyltransferase Family 4 LP316_04555 PF03591 AzlC protein LP316_04585 PF00072 Response regulator receiver domain LP316_04585 PF00486 Transcriptional regulatory protein, C terminal LP316_04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_04590 PF00512 His Kinase A (phospho-acceptor) domain LP316_04590 PF00672 HAMP domain LP316_04595 PF01293 Phosphoenolpyruvate carboxykinase LP316_04600 PF01430 Hsp33 protein LP316_04605 PF01479 S4 domain LP316_04610 PF11356 Type II secretion system protein C LP316_04615 PF00263 Bacterial type II and III secretion system protein LP316_04615 PF03958 Bacterial type II/III secretion system short domain LP316_04620 PF00437 Type II/IV secretion system protein LP316_04625 PF00482 Type II secretion system (T2SS), protein F LP316_04630 PF08334 Type II secretion system (T2SS), protein G LP316_04630 PF07963 Prokaryotic N-terminal methylation motif LP316_04635 PF07963 Prokaryotic N-terminal methylation motif LP316_04635 PF12019 Type II transport protein GspH LP316_04640 PF07963 Prokaryotic N-terminal methylation motif LP316_04640 PF02501 Type II secretion system (T2SS), protein I LP316_04645 PF11612 Type II secretion system (T2SS), protein J LP316_04645 PF07963 Prokaryotic N-terminal methylation motif LP316_04650 PF03934 Type II secretion system (T2SS), protein K LP316_04655 PF05134 Type II secretion system (T2SS), protein L LP316_04655 PF12693 GspL periplasmic domain LP316_04660 PF04612 Type II secretion system (T2SS), protein M LP316_04665 PF01203 Type II secretion system (T2SS), protein N LP316_04670 PF13419 Haloacid dehalogenase-like hydrolase LP316_04675 PF00293 NUDIX domain LP316_04680 PF00459 Inositol monophosphatase family LP316_04690 PF06794 Uncharacterised protein family (UPF0270) LP316_04695 PF00561 alpha/beta hydrolase fold LP316_04700 PF00669 Bacterial flagellin N-terminal helical region LP316_04700 PF00700 Bacterial flagellin C-terminal helical region LP316_04700 PF07196 Flagellin hook IN motif LP316_04710 PF00005 ABC transporter LP316_04710 PF12848 ABC transporter LP316_04720 PF04102 SlyX LP316_04730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_04730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LP316_04745 PF01208 Uroporphyrinogen decarboxylase (URO-D) LP316_04750 PF14850 DNA-binding domain of Proline dehydrogenase LP316_04750 PF01619 Proline dehydrogenase LP316_04750 PF00171 Aldehyde dehydrogenase family LP316_04750 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LP316_04755 PF01037 Lrp/AsnC ligand binding domain LP316_04770 PF00209 Sodium:neurotransmitter symporter family LP316_04775 PF17785 PUA-like domain LP316_04775 PF10672 S-adenosylmethionine-dependent methyltransferase LP316_04780 PF01810 LysE type translocator LP316_04785 PF14743 DNA ligase OB-like domain LP316_04785 PF01068 ATP dependent DNA ligase domain LP316_04805 PF01541 GIY-YIG catalytic domain LP316_04820 PF00543 Nitrogen regulatory protein P-II LP316_04825 PF00909 Ammonium Transporter Family LP316_04830 PF04261 Dyp-type peroxidase family LP316_04835 PF02863 Arginine repressor, C-terminal domain LP316_04835 PF01316 Arginine repressor, DNA binding domain LP316_04840 PF00056 lactate/malate dehydrogenase, NAD binding domain LP316_04840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LP316_04850 PF00348 Polyprenyl synthetase LP316_04855 PF00829 Ribosomal prokaryotic L21 protein LP316_04860 PF01016 Ribosomal L27 protein LP316_04865 PF01018 GTP1/OBG LP316_04865 PF01926 50S ribosome-binding GTPase LP316_04870 PF00186 Dihydrofolate reductase LP316_04880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_04880 PF00672 HAMP domain LP316_04885 PF00149 Calcineurin-like phosphoesterase LP316_04890 PF04379 ApaG domain LP316_04895 PF00398 Ribosomal RNA adenine dimethylase LP316_04900 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LP316_04905 PF00639 PPIC-type PPIASE domain LP316_04905 PF09312 SurA N-terminal domain LP316_04910 PF03968 OstA-like protein LP316_04910 PF04453 LPS transport system D LP316_04915 PF01636 Phosphotransferase enzyme family LP316_04920 PF00483 Nucleotidyl transferase LP316_04925 PF00226 DnaJ domain LP316_04925 PF05099 Tellurite resistance protein TerB LP316_04940 PF00849 RNA pseudouridylate synthase LP316_04945 PF00271 Helicase conserved C-terminal domain LP316_04945 PF18337 RapA N-terminal Tudor like domain LP316_04945 PF18339 RapA N-terminal Tudor like domain 1 LP316_04945 PF00176 SNF2 family N-terminal domain LP316_04945 PF12137 RNA polymerase recycling family C-terminal LP316_04950 PF13638 PIN domain LP316_04950 PF02562 PhoH-like protein LP316_04960 PF01645 Conserved region in glutamate synthase LP316_04970 PF01627 Hpt domain LP316_04970 PF00672 HAMP domain LP316_04970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LP316_04970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_04970 PF00072 Response regulator receiver domain LP316_04970 PF00512 His Kinase A (phospho-acceptor) domain LP316_04980 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_04980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_04980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_04980 PF12806 Acetyl-CoA dehydrogenase C-terminal like LP316_04990 PF00378 Enoyl-CoA hydratase/isomerase LP316_04990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LP316_04990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LP316_04995 PF02803 Thiolase, C-terminal domain LP316_04995 PF00108 Thiolase, N-terminal domain LP316_05020 PF02833 DHHA2 domain LP316_05020 PF01368 DHH family LP316_05025 PF02322 Cytochrome bd terminal oxidase subunit II LP316_05030 PF01654 Cytochrome bd terminal oxidase subunit I LP316_05040 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LP316_05050 PF00892 EamA-like transporter family LP316_05055 PF00155 Aminotransferase class I and II LP316_05055 PF00392 Bacterial regulatory proteins, gntR family LP316_05060 PF07690 Major Facilitator Superfamily LP316_05070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LP316_05070 PF00289 Biotin carboxylase, N-terminal domain LP316_05070 PF02785 Biotin carboxylase C-terminal domain LP316_05075 PF00364 Biotin-requiring enzyme LP316_05080 PF01220 Dehydroquinase class II LP316_05095 PF03707 Bacterial signalling protein N terminal repeat LP316_05095 PF00990 Diguanylate cyclase, GGDEF domain LP316_05095 PF00563 EAL domain LP316_05100 PF01116 Fructose-bisphosphate aldolase class-II LP316_05105 PF03167 Uracil DNA glycosylase superfamily LP316_05110 PF11412 Disulphide bond corrector protein DsbC LP316_05110 PF02683 Cytochrome C biogenesis protein transmembrane region LP316_05115 PF03091 CutA1 divalent ion tolerance protein LP316_05120 PF04186 FxsA cytoplasmic membrane protein LP316_05125 PF00166 Chaperonin 10 Kd subunit LP316_05130 PF00118 TCP-1/cpn60 chaperonin family LP316_05140 PF07676 WD40-like Beta Propeller Repeat LP316_05140 PF00326 Prolyl oligopeptidase family LP316_05160 PF00924 Mechanosensitive ion channel LP316_05170 PF04055 Radical SAM superfamily LP316_05175 PF08207 Elongation factor P (EF-P) KOW-like domain LP316_05175 PF01132 Elongation factor P (EF-P) OB domain LP316_05175 PF09285 Elongation factor P, C-terminal LP316_05180 PF00005 ABC transporter LP316_05185 PF01061 ABC-2 type transporter LP316_05190 PF02390 Putative methyltransferase LP316_05195 PF00282 Pyridoxal-dependent decarboxylase conserved domain LP316_05200 PF02569 Pantoate-beta-alanine ligase LP316_05205 PF02548 Ketopantoate hydroxymethyltransferase LP316_05210 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LP316_05215 PF01743 Poly A polymerase head domain LP316_05215 PF12626 Polymerase A arginine-rich C-terminus LP316_05215 PF12627 Probable RNA and SrmB- binding site of polymerase A LP316_05220 PF00749 tRNA synthetases class I (E and Q), catalytic domain LP316_05225 PF01258 Prokaryotic dksA/traR C4-type zinc finger LP316_05230 PF03749 Sugar fermentation stimulation protein RE domain LP316_05230 PF17746 SfsA N-terminal OB domain LP316_05235 PF00141 Peroxidase LP316_05240 PF02253 Phospholipase A1 LP316_05245 PF00883 Cytosol aminopeptidase family, catalytic domain LP316_05245 PF12404 Peptidase LP316_05260 PF08482 ATP-dependent helicase C-terminal LP316_05260 PF04408 Helicase associated domain (HA2) LP316_05260 PF00270 DEAD/DEAH box helicase LP316_05260 PF00271 Helicase conserved C-terminal domain LP316_05265 PF00905 Penicillin binding protein transpeptidase domain LP316_05265 PF14814 Bifunctional transglycosylase second domain LP316_05265 PF00912 Transglycosylase LP316_05270 PF00202 Aminotransferase class-III LP316_05275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LP316_05275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LP316_05285 PF13181 Tetratricopeptide repeat LP316_05285 PF01435 Peptidase family M48 LP316_05295 PF03653 Uncharacterised protein family (UPF0093) LP316_05300 PF00654 Voltage gated chloride channel LP316_05310 PF01521 Iron-sulphur cluster biosynthesis LP316_05350 PF00873 AcrB/AcrD/AcrF family LP316_05355 PF04389 Peptidase family M28 LP316_05355 PF02225 PA domain LP316_05360 PF11871 Domain of unknown function (DUF3391) LP316_05360 PF01966 HD domain LP316_05365 PF08238 Sel1 repeat LP316_05370 PF08461 Ribonuclease R winged-helix domain LP316_05370 PF17876 Cold shock domain LP316_05370 PF00575 S1 RNA binding domain LP316_05370 PF08206 Ribonuclease B OB domain LP316_05370 PF00773 RNB domain LP316_05375 PF08032 RNA 2'-O ribose methyltransferase substrate binding LP316_05375 PF00588 SpoU rRNA Methylase family LP316_05380 PF00582 Universal stress protein family LP316_05390 PF01250 Ribosomal protein S6 LP316_05395 PF00436 Single-strand binding protein family LP316_05400 PF01084 Ribosomal protein S18 LP316_05405 PF01281 Ribosomal protein L9, N-terminal domain LP316_05405 PF03948 Ribosomal protein L9, C-terminal domain LP316_05410 PF00563 EAL domain LP316_05410 PF17157 Gammaproteobacterial periplasmic sensor domain LP316_05410 PF00990 Diguanylate cyclase, GGDEF domain LP316_05440 PF03958 Bacterial type II/III secretion system short domain LP316_05440 PF00263 Bacterial type II and III secretion system protein LP316_05445 PF01471 Putative peptidoglycan binding domain LP316_05445 PF13401 AAA domain LP316_05455 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LP316_05455 PF00437 Type II/IV secretion system protein LP316_05460 PF00482 Type II secretion system (T2SS), protein F LP316_05470 PF07963 Prokaryotic N-terminal methylation motif LP316_05475 PF07963 Prokaryotic N-terminal methylation motif LP316_05480 PF07963 Prokaryotic N-terminal methylation motif LP316_05485 PF07963 Prokaryotic N-terminal methylation motif LP316_05485 PF00114 Pilin (bacterial filament) LP316_05510 PF04085 rod shape-determining protein MreC LP316_05515 PF04093 rod shape-determining protein MreD LP316_05520 PF02545 Maf-like protein LP316_05525 PF00575 S1 RNA binding domain LP316_05525 PF10150 Ribonuclease E/G family LP316_05530 PF13116 Protein of unknown function LP316_05530 PF13502 AsmA-like C-terminal region LP316_05535 PF00795 Carbon-nitrogen hydrolase LP316_05540 PF01523 Putative modulator of DNA gyrase LP316_05545 PF09905 DNA-binding protein VF530 LP316_05555 PF00474 Sodium:solute symporter family LP316_05560 PF00342 Phosphoglucose isomerase LP316_05565 PF01557 Fumarylacetoacetate (FAA) hydrolase family LP316_05570 PF17158 Membrane-associated sensor, integral membrane domain LP316_05570 PF00990 Diguanylate cyclase, GGDEF domain LP316_05580 PF12867 DinB superfamily LP316_05580 PF03781 Sulfatase-modifying factor enzyme 1 LP316_05585 PF00155 Aminotransferase class I and II LP316_05590 PF14508 Glycosyl-hydrolase 97 N-terminal LP316_05590 PF10566 Glycoside hydrolase 97 LP316_05590 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation LP316_05595 PF11852 Domain of unknown function (DUF3372) LP316_05595 PF18494 Pullulanase Ins domain LP316_05595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LP316_05595 PF17967 Pullulanase N2 domain LP316_05595 PF03714 Bacterial pullanase-associated domain LP316_05605 PF17967 Pullulanase N2 domain LP316_05605 PF03714 Bacterial pullanase-associated domain LP316_05605 PF11852 Domain of unknown function (DUF3372) LP316_05605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LP316_05605 PF18494 Pullulanase Ins domain LP316_05615 PF04820 Tryptophan halogenase LP316_05620 PF04820 Tryptophan halogenase LP316_05645 PF00873 AcrB/AcrD/AcrF family LP316_05660 PF00512 His Kinase A (phospho-acceptor) domain LP316_05660 PF00672 HAMP domain LP316_05660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_05665 PF00486 Transcriptional regulatory protein, C terminal LP316_05665 PF00072 Response regulator receiver domain LP316_05675 PF13180 PDZ domain LP316_05680 PF00595 PDZ domain LP316_05690 PF03969 AFG1-like ATPase LP316_05695 PF00572 Ribosomal protein L13 LP316_05700 PF00380 Ribosomal protein S9/S16 LP316_05705 PF00355 Rieske [2Fe-2S] domain LP316_05705 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LP316_05710 PF00033 Cytochrome b/b6/petB LP316_05710 PF00032 Cytochrome b(C-terminal)/b6/petD LP316_05715 PF02167 Cytochrome C1 family LP316_05725 PF00043 Glutathione S-transferase, C-terminal domain LP316_05725 PF02798 Glutathione S-transferase, N-terminal domain LP316_05730 PF04386 Stringent starvation protein B LP316_05735 PF03061 Thioesterase superfamily LP316_05740 PF01553 Acyltransferase LP316_05745 PF06877 Regulator of ribonuclease activity B LP316_05755 PF00873 AcrB/AcrD/AcrF family LP316_05760 PF13533 Biotin-lipoyl like LP316_05765 PF17932 Tetracyclin repressor-like, C-terminal domain LP316_05765 PF00440 Bacterial regulatory proteins, tetR family LP316_05775 PF04235 Protein of unknown function (DUF418) LP316_05780 PF02789 Cytosol aminopeptidase family, N-terminal domain LP316_05780 PF00883 Cytosol aminopeptidase family, catalytic domain LP316_05785 PF00128 Alpha amylase, catalytic domain LP316_05785 PF02806 Alpha amylase, C-terminal all-beta domain LP316_05785 PF03714 Bacterial pullanase-associated domain LP316_05790 PF02446 4-alpha-glucanotransferase LP316_05795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LP316_05795 PF00128 Alpha amylase, catalytic domain LP316_05800 PF02806 Alpha amylase, C-terminal all-beta domain LP316_05800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LP316_05800 PF00128 Alpha amylase, catalytic domain LP316_05805 PF00343 Carbohydrate phosphorylase LP316_05815 PF02321 Outer membrane efflux protein LP316_05820 PF00293 NUDIX domain LP316_05830 PF00149 Calcineurin-like phosphoesterase LP316_05835 PF05728 Uncharacterised protein family (UPF0227) LP316_05840 PF00986 DNA gyrase B subunit, carboxyl terminus LP316_05840 PF01751 Toprim domain LP316_05840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_05840 PF00204 DNA gyrase B LP316_05845 PF00491 Arginase family LP316_05850 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LP316_05850 PF17944 Arginine decarboxylase C-terminal helical extension LP316_05850 PF17810 Arginine decarboxylase helical bundle domain LP316_05855 PF03471 Transporter associated domain LP316_05855 PF01595 Cyclin M transmembrane N-terminal domain LP316_05855 PF00571 CBS domain LP316_05860 PF01276 Orn/Lys/Arg decarboxylase, major domain LP316_05860 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LP316_05860 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LP316_05865 PF00578 AhpC/TSA family LP316_05875 PF00990 Diguanylate cyclase, GGDEF domain LP316_05875 PF17151 Periplasmic sensor domain LP316_05880 PF00990 Diguanylate cyclase, GGDEF domain LP316_05885 PF00521 DNA gyrase/topoisomerase IV, subunit A LP316_05885 PF03989 DNA gyrase C-terminal domain, beta-propeller LP316_05895 PF00356 Bacterial regulatory proteins, lacI family LP316_05900 PF01709 Transcriptional regulator LP316_05910 PF03466 LysR substrate binding domain LP316_05910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_05915 PF00593 TonB dependent receptor LP316_05915 PF07715 TonB-dependent Receptor Plug Domain LP316_05930 PF03150 Di-haem cytochrome c peroxidase LP316_05930 PF00034 Cytochrome c LP316_05960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_05960 PF03466 LysR substrate binding domain LP316_05965 PF07681 DoxX LP316_05970 PF02678 Pirin LP316_05970 PF17954 Quercetinase C-terminal cupin domain LP316_05975 PF13409 Glutathione S-transferase, N-terminal domain LP316_05995 PF01169 Uncharacterized protein family UPF0016 LP316_06000 PF04362 Bacterial Fe(2+) trafficking LP316_06005 PF10576 Iron-sulfur binding domain of endonuclease III LP316_06005 PF00730 HhH-GPD superfamily base excision DNA repair protein LP316_06005 PF00633 Helix-hairpin-helix motif LP316_06005 PF14815 NUDIX domain LP316_06010 PF04320 Protein with unknown function (DUF469) LP316_06015 PF02390 Putative methyltransferase LP316_06030 PF13180 PDZ domain LP316_06035 PF04336 Acyl carrier protein phosphodiesterase LP316_06040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LP316_06040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LP316_06045 PF02805 Metal binding domain of Ada LP316_06045 PF00730 HhH-GPD superfamily base excision DNA repair protein LP316_06045 PF06029 AlkA N-terminal domain LP316_06045 PF12833 Helix-turn-helix domain LP316_06055 PF00916 Sulfate permease family LP316_06055 PF01740 STAS domain LP316_06060 PF06945 Protein of unknown function (DUF1289) LP316_06070 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LP316_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_06075 PF00512 His Kinase A (phospho-acceptor) domain LP316_06075 PF00497 Bacterial extracellular solute-binding proteins, family 3 LP316_06080 PF11849 Domain of unknown function (DUF3369) LP316_06090 PF00561 alpha/beta hydrolase fold LP316_06095 PF00005 ABC transporter LP316_06105 PF00464 Serine hydroxymethyltransferase LP316_06110 PF03477 ATP cone domain LP316_06115 PF01872 RibD C-terminal domain LP316_06115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LP316_06120 PF00677 Lumazine binding domain LP316_06125 PF00925 GTP cyclohydrolase II LP316_06125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LP316_06130 PF00672 HAMP domain LP316_06130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_06130 PF12729 Four helix bundle sensory module for signal transduction LP316_06140 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LP316_06140 PF02779 Transketolase, pyrimidine binding domain LP316_06140 PF02780 Transketolase, C-terminal domain LP316_06145 PF00348 Polyprenyl synthetase LP316_06150 PF02609 Exonuclease VII small subunit LP316_06155 PF01618 MotA/TolQ/ExbB proton channel family LP316_06160 PF13677 Membrane MotB of proton-channel complex MotA/MotB LP316_06160 PF00691 OmpA family LP316_06165 PF02568 Thiamine biosynthesis protein (ThiI) LP316_06165 PF02926 THUMP domain LP316_06180 PF02558 Ketopantoate reductase PanE/ApbA LP316_06180 PF08546 Ketopantoate reductase PanE/ApbA C terminal LP316_06190 PF04461 Protein of unknown function (DUF520) LP316_06195 PF00209 Sodium:neurotransmitter symporter family LP316_06200 PF00849 RNA pseudouridylate synthase LP316_06205 PF03553 Na+/H+ antiporter family LP316_06210 PF04262 Glutamate-cysteine ligase LP316_06220 PF03471 Transporter associated domain LP316_06220 PF00571 CBS domain LP316_06220 PF01595 Cyclin M transmembrane N-terminal domain LP316_06235 PF02978 Signal peptide binding domain LP316_06235 PF00448 SRP54-type protein, GTPase domain LP316_06235 PF02881 SRP54-type protein, helical bundle domain LP316_06240 PF00082 Subtilase family LP316_06240 PF05922 Peptidase inhibitor I9 LP316_06240 PF02225 PA domain LP316_06240 PF13860 FlgD Ig-like domain LP316_06245 PF04751 Protein of unknown function (DUF615) LP316_06250 PF01523 Putative modulator of DNA gyrase LP316_06255 PF03448 MgtE intracellular N domain LP316_06255 PF01769 Divalent cation transporter LP316_06255 PF00571 CBS domain LP316_06260 PF00381 PTS HPr component phosphorylation site LP316_06265 PF03668 P-loop ATPase protein family LP316_06270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LP316_06275 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LP316_06280 PF04552 Sigma-54, DNA binding domain LP316_06280 PF00309 Sigma-54 factor, Activator interacting domain (AID) LP316_06280 PF04963 Sigma-54 factor, core binding domain LP316_06285 PF12399 Branched-chain amino acid ATP-binding cassette transporter LP316_06285 PF00005 ABC transporter LP316_06305 PF01380 SIS domain LP316_06305 PF00571 CBS domain LP316_06310 PF01699 Sodium/calcium exchanger protein LP316_06315 PF00005 ABC transporter LP316_06320 PF02405 Permease MlaE LP316_06325 PF02470 MlaD protein LP316_06330 PF05494 MlaC protein LP316_06340 PF01722 BolA-like protein LP316_06350 PF01471 Putative peptidoglycan binding domain LP316_06350 PF13401 AAA domain LP316_06365 PF01966 HD domain LP316_06365 PF11871 Domain of unknown function (DUF3391) LP316_06370 PF00694 Aconitase C-terminal domain LP316_06375 PF00330 Aconitase family (aconitate hydratase) LP316_06380 PF00180 Isocitrate/isopropylmalate dehydrogenase LP316_06385 PF00682 HMGL-like LP316_06385 PF08502 LeuA allosteric (dimerisation) domain LP316_06405 PF08239 Bacterial SH3 domain LP316_06415 PF03734 L,D-transpeptidase catalytic domain LP316_06415 PF01476 LysM domain LP316_06415 PF17969 L,D-transpeptidase C-terminal domain LP316_06460 PF08335 GlnD PII-uridylyltransferase LP316_06460 PF03710 Glutamate-ammonia ligase adenylyltransferase LP316_06470 PF03279 Bacterial lipid A biosynthesis acyltransferase LP316_06475 PF00534 Glycosyl transferases group 1 LP316_06480 PF00886 Ribosomal protein S16 LP316_06485 PF05239 PRC-barrel domain LP316_06485 PF01782 RimM N-terminal domain LP316_06490 PF01746 tRNA (Guanine-1)-methyltransferase LP316_06495 PF01245 Ribosomal protein L19 LP316_06500 PF00171 Aldehyde dehydrogenase family LP316_06505 PF00205 Thiamine pyrophosphate enzyme, central domain LP316_06505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LP316_06505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LP316_06515 PF13193 AMP-binding enzyme C-terminal domain LP316_06515 PF16177 Acetyl-coenzyme A synthetase N-terminus LP316_06515 PF00501 AMP-binding enzyme LP316_06520 PF00793 DAHP synthetase I family LP316_06525 PF02153 Prephenate dehydrogenase LP316_06525 PF01817 Chorismate mutase type II LP316_06555 PF13533 Biotin-lipoyl like LP316_06560 PF00873 AcrB/AcrD/AcrF family LP316_06570 PF01817 Chorismate mutase type II LP316_06570 PF00800 Prephenate dehydratase LP316_06575 PF01804 Penicillin amidase LP316_06585 PF00154 recA bacterial DNA recombination protein LP316_06590 PF01624 MutS domain I LP316_06590 PF05192 MutS domain III LP316_06590 PF05188 MutS domain II LP316_06590 PF05190 MutS family domain IV LP316_06590 PF00488 MutS domain V LP316_06610 PF01243 Pyridoxamine 5'-phosphate oxidase LP316_06610 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LP316_06615 PF07687 Peptidase dimerisation domain LP316_06615 PF01546 Peptidase family M20/M25/M40 LP316_06625 PF03264 NapC/NirT cytochrome c family, N-terminal region LP316_06630 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LP316_06635 PF00384 Molybdopterin oxidoreductase LP316_06635 PF01568 Molydopterin dinucleotide binding domain LP316_06635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LP316_06655 PF17176 tRNA-binding domain LP316_06655 PF08351 Domain of unknown function (DUF1726) LP316_06655 PF05127 Helicase LP316_06655 PF13718 GNAT acetyltransferase 2 LP316_06660 PF01625 Peptide methionine sulfoxide reductase LP316_06675 PF04219 Protein of unknown function, DUF LP316_06680 PF04957 Ribosome modulation factor LP316_06685 PF00266 Aminotransferase class-V LP316_06690 PF00390 Malic enzyme, N-terminal domain LP316_06690 PF03949 Malic enzyme, NAD binding domain LP316_06695 PF00334 Nucleoside diphosphate kinase LP316_06700 PF04055 Radical SAM superfamily LP316_06710 PF13464 Domain of unknown function (DUF4115) LP316_06715 PF04551 GcpE protein LP316_06720 PF13393 Histidyl-tRNA synthetase LP316_06720 PF03129 Anticodon binding domain LP316_06725 PF09976 Tetratricopeptide repeat-like domain LP316_06730 PF13360 PQQ-like domain LP316_06735 PF01926 50S ribosome-binding GTPase LP316_06735 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LP316_06745 PF13742 OB-fold nucleic acid binding domain LP316_06745 PF02601 Exonuclease VII, large subunit LP316_06750 PF00571 CBS domain LP316_06750 PF00478 IMP dehydrogenase / GMP reductase domain LP316_06755 PF00117 Glutamine amidotransferase class-I LP316_06755 PF00958 GMP synthase C terminal domain LP316_06755 PF02540 NAD synthase LP316_06775 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LP316_06785 PF07690 Major Facilitator Superfamily LP316_06795 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LP316_06805 PF05175 Methyltransferase small domain LP316_06815 PF01722 BolA-like protein LP316_06825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LP316_06830 PF03480 Bacterial extracellular solute-binding protein, family 7 LP316_06840 PF11973 NQRA C-terminal domain LP316_06840 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LP316_06845 PF03116 NQR2, RnfD, RnfE family LP316_06850 PF04205 FMN-binding domain LP316_06855 PF02508 Rnf-Nqr subunit, membrane protein LP316_06860 PF02508 Rnf-Nqr subunit, membrane protein LP316_06865 PF00175 Oxidoreductase NAD-binding domain LP316_06865 PF00111 2Fe-2S iron-sulfur cluster binding domain LP316_06865 PF00970 Oxidoreductase FAD-binding domain LP316_06870 PF02424 ApbE family LP316_06875 PF04400 (Na+)-NQR maturation NqrM LP316_06880 PF11799 impB/mucB/samB family C-terminal domain LP316_06880 PF00817 impB/mucB/samB family LP316_06880 PF11798 IMS family HHH motif LP316_06890 PF04381 Putative exonuclease, RdgC LP316_06895 PF00512 His Kinase A (phospho-acceptor) domain LP316_06895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_06895 PF00497 Bacterial extracellular solute-binding proteins, family 3 LP316_06900 PF00267 Gram-negative porin LP316_06905 PF00072 Response regulator receiver domain LP316_06905 PF00486 Transcriptional regulatory protein, C terminal LP316_06910 PF11808 Phosphate regulon sensor protein PhoR LP316_06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_06910 PF00512 His Kinase A (phospho-acceptor) domain LP316_06910 PF00989 PAS fold LP316_06915 PF12849 PBP superfamily domain LP316_06920 PF02541 Ppx/GppA phosphatase family LP316_06925 PF13089 Polyphosphate kinase N-terminal domain LP316_06925 PF02503 Polyphosphate kinase middle domain LP316_06925 PF17941 Polyphosphate kinase C-terminal domain 1 LP316_06925 PF13090 Polyphosphate kinase C-terminal domain 2 LP316_06935 PF07238 PilZ domain LP316_06940 PF00005 ABC transporter LP316_06940 PF12848 ABC transporter LP316_06955 PF01593 Flavin containing amine oxidoreductase LP316_06960 PF00106 short chain dehydrogenase LP316_06970 PF00875 DNA photolyase LP316_06970 PF03441 FAD binding domain of DNA photolyase LP316_06980 PF12973 ChrR Cupin-like domain LP316_06985 PF04542 Sigma-70 region 2 LP316_06985 PF04545 Sigma-70, region 4 LP316_06995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LP316_06995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LP316_07000 PF00571 CBS domain LP316_07000 PF00478 IMP dehydrogenase / GMP reductase domain LP316_07020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_07020 PF12806 Acetyl-CoA dehydrogenase C-terminal like LP316_07020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_07020 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_07030 PF01336 OB-fold nucleic acid binding domain LP316_07030 PF00152 tRNA synthetases class II (D, K and N) LP316_07040 PF01368 DHH family LP316_07040 PF02272 DHHA1 domain LP316_07040 PF17768 RecJ OB domain LP316_07045 PF10411 Disulfide bond isomerase protein N-terminus LP316_07045 PF13098 Thioredoxin-like domain LP316_07050 PF00258 Flavodoxin LP316_07055 PF00271 Helicase conserved C-terminal domain LP316_07055 PF00270 DEAD/DEAH box helicase LP316_07075 PF03883 Peroxide stress protein YaaA LP316_07080 PF00923 Transaldolase/Fructose-6-phosphate aldolase LP316_07100 PF01638 HxlR-like helix-turn-helix LP316_07135 PF00520 Ion transport protein LP316_07135 PF00027 Cyclic nucleotide-binding domain LP316_07155 PF01584 CheW-like domain LP316_07155 PF00072 Response regulator receiver domain LP316_07160 PF03705 CheR methyltransferase, all-alpha domain LP316_07160 PF01739 CheR methyltransferase, SAM binding domain LP316_07165 PF00460 Flagella basal body rod protein LP316_07170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LP316_07170 PF00460 Flagella basal body rod protein LP316_07175 PF13860 FlgD Ig-like domain LP316_07175 PF13861 FlgD Tudor-like domain LP316_07175 PF03963 Flagellar hook capping protein - N-terminal region LP316_07180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LP316_07180 PF00460 Flagella basal body rod protein LP316_07180 PF07559 Flagellar basal body protein FlaE LP316_07185 PF00460 Flagella basal body rod protein LP316_07185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LP316_07190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LP316_07190 PF00460 Flagella basal body rod protein LP316_07195 PF02107 Flagellar L-ring protein LP316_07200 PF02119 Flagellar P-ring protein LP316_07205 PF10135 Rod binding protein LP316_07205 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LP316_07210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LP316_07210 PF00460 Flagella basal body rod protein LP316_07220 PF00700 Bacterial flagellin C-terminal helical region LP316_07220 PF07196 Flagellin hook IN motif LP316_07220 PF00669 Bacterial flagellin N-terminal helical region LP316_07225 PF07196 Flagellin hook IN motif LP316_07225 PF00700 Bacterial flagellin C-terminal helical region LP316_07225 PF00669 Bacterial flagellin N-terminal helical region LP316_07230 PF00700 Bacterial flagellin C-terminal helical region LP316_07230 PF00669 Bacterial flagellin N-terminal helical region LP316_07230 PF07196 Flagellin hook IN motif LP316_07240 PF07196 Flagellin hook IN motif LP316_07240 PF07195 Flagellar hook-associated protein 2 C-terminus LP316_07240 PF02465 Flagellar hook-associated protein 2 N-terminus LP316_07245 PF02561 Flagellar protein FliS LP316_07260 PF16363 GDP-mannose 4,6 dehydratase LP316_07265 PF02350 UDP-N-acetylglucosamine 2-epimerase LP316_07270 PF03102 NeuB family LP316_07270 PF08666 SAF domain LP316_07275 PF00483 Nucleotidyl transferase LP316_07280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LP316_07280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LP316_07285 PF02348 Cytidylyltransferase LP316_07285 PF13472 GDSL-like Lipase/Acylhydrolase family LP316_07295 PF06490 Flagellar regulatory protein FleQ LP316_07295 PF02954 Bacterial regulatory protein, Fis family LP316_07295 PF00158 Sigma-54 interaction domain LP316_07305 PF00512 His Kinase A (phospho-acceptor) domain LP316_07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_07305 PF13188 PAS domain LP316_07310 PF00158 Sigma-54 interaction domain LP316_07310 PF00072 Response regulator receiver domain LP316_07310 PF02954 Bacterial regulatory protein, Fis family LP316_07315 PF02049 Flagellar hook-basal body complex protein FliE LP316_07320 PF01514 Secretory protein of YscJ/FliF family LP316_07320 PF08345 Flagellar M-ring protein C-terminal LP316_07325 PF14841 FliG middle domain LP316_07325 PF14842 FliG N-terminal domain LP316_07325 PF01706 FliG C-terminal domain LP316_07335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LP316_07335 PF18269 T3SS EscN ATPase C-terminal domain LP316_07345 PF02120 Flagellar hook-length control protein FliK LP316_07355 PF02154 Flagellar motor switch protein FliM LP316_07355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LP316_07360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LP316_07370 PF00813 FliP family LP316_07375 PF01313 Bacterial export proteins, family 3 LP316_07380 PF01311 Bacterial export proteins, family 1 LP316_07385 PF01312 FlhB HrpN YscU SpaS Family LP316_07390 PF00771 FHIPEP family LP316_07395 PF00448 SRP54-type protein, GTPase domain LP316_07400 PF10609 NUBPL iron-transfer P-loop NTPase LP316_07405 PF04545 Sigma-70, region 4 LP316_07405 PF04542 Sigma-70 region 2 LP316_07405 PF04539 Sigma-70 region 3 LP316_07410 PF00072 Response regulator receiver domain LP316_07415 PF04344 Chemotaxis phosphatase, CheZ LP316_07420 PF01584 CheW-like domain LP316_07420 PF02895 Signal transducing histidine kinase, homodimeric domain LP316_07420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_07420 PF00072 Response regulator receiver domain LP316_07420 PF01627 Hpt domain LP316_07425 PF00072 Response regulator receiver domain LP316_07425 PF01339 CheB methylesterase LP316_07430 PF01618 MotA/TolQ/ExbB proton channel family LP316_07435 PF13677 Membrane MotB of proton-channel complex MotA/MotB LP316_07435 PF00691 OmpA family LP316_07440 PF13614 AAA domain LP316_07450 PF01584 CheW-like domain LP316_07460 PF04333 MlaA lipoprotein LP316_07470 PF18665 Tetracyclin repressor-like, C-terminal domain LP316_07470 PF00440 Bacterial regulatory proteins, tetR family LP316_07475 PF00933 Glycosyl hydrolase family 3 N terminal domain LP316_07480 PF00939 Sodium:sulfate symporter transmembrane region LP316_07485 PF02600 Disulfide bond formation protein DsbB LP316_07490 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LP316_07495 PF07840 FadR C-terminal domain LP316_07495 PF00392 Bacterial regulatory proteins, gntR family LP316_07500 PF04293 SpoVR like protein LP316_07505 PF04285 Protein of unknown function (DUF444) LP316_07510 PF06798 PrkA serine protein kinase C-terminal domain LP316_07510 PF08298 PrkA AAA domain LP316_07515 PF02743 Cache domain LP316_07515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_07515 PF00672 HAMP domain LP316_07530 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LP316_07530 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LP316_07535 PF00462 Glutaredoxin LP316_07540 PF00578 AhpC/TSA family LP316_07540 PF10417 C-terminal domain of 1-Cys peroxiredoxin LP316_07545 PF00929 Exonuclease LP316_07550 PF18393 MotY N-terminal domain LP316_07550 PF00691 OmpA family LP316_07555 PF01433 Peptidase family M1 domain LP316_07560 PF00005 ABC transporter LP316_07565 PF00005 ABC transporter LP316_07565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LP316_07570 PF12911 N-terminal TM domain of oligopeptide transport permease C LP316_07570 PF00528 Binding-protein-dependent transport system inner membrane component LP316_07575 PF00528 Binding-protein-dependent transport system inner membrane component LP316_07580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LP316_07585 PF00158 Sigma-54 interaction domain LP316_07585 PF02954 Bacterial regulatory protein, Fis family LP316_07590 PF04012 PspA/IM30 family LP316_07605 PF04317 YcjX-like family, DUF463 LP316_07610 PF05128 Domain of unknown function (DUF697) LP316_07615 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LP316_07620 PF01329 Pterin 4 alpha carbinolamine dehydratase LP316_07625 PF00158 Sigma-54 interaction domain LP316_07625 PF18024 Helix-turn-helix domain LP316_07635 PF14497 Glutathione S-transferase, C-terminal domain LP316_07635 PF02798 Glutathione S-transferase, N-terminal domain LP316_07655 PF03301 Tryptophan 2,3-dioxygenase LP316_07665 PF01925 Sulfite exporter TauE/SafE LP316_07670 PF00593 TonB dependent receptor LP316_07670 PF07715 TonB-dependent Receptor Plug Domain LP316_07690 PF13181 Tetratricopeptide repeat LP316_07710 PF01618 MotA/TolQ/ExbB proton channel family LP316_07715 PF01618 MotA/TolQ/ExbB proton channel family LP316_07720 PF02472 Biopolymer transport protein ExbD/TolR LP316_07725 PF03544 Gram-negative bacterial TonB protein C-terminal LP316_07735 PF01207 Dihydrouridine synthase (Dus) LP316_07745 PF00072 Response regulator receiver domain LP316_07745 PF00486 Transcriptional regulatory protein, C terminal LP316_07750 PF00156 Phosphoribosyl transferase domain LP316_07755 PF12170 DNA polymerase III tau subunit V interacting with alpha LP316_07755 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LP316_07755 PF12169 DNA polymerase III subunits gamma and tau domain III LP316_07760 PF02575 YbaB/EbfC DNA-binding family LP316_07775 PF14579 Helix-hairpin-helix motif LP316_07775 PF01336 OB-fold nucleic acid binding domain LP316_07775 PF07733 Bacterial DNA polymerase III alpha NTPase domain LP316_07775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LP316_07775 PF02811 PHP domain LP316_07785 PF13396 Phospholipase_D-nuclease N-terminal LP316_07785 PF13091 PLD-like domain LP316_07815 PF00529 HlyD membrane-fusion protein of T1SS LP316_07815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LP316_07820 PF02321 Outer membrane efflux protein LP316_07835 PF02132 RecR protein LP316_07835 PF13662 Toprim domain LP316_07840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_07840 PF00183 Hsp90 protein LP316_07880 PF00266 Aminotransferase class-V LP316_07885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LP316_07890 PF00141 Peroxidase LP316_07895 PF00730 HhH-GPD superfamily base excision DNA repair protein LP316_07895 PF00633 Helix-hairpin-helix motif LP316_07895 PF10576 Iron-sulfur binding domain of endonuclease III LP316_07900 PF02508 Rnf-Nqr subunit, membrane protein LP316_07905 PF04205 FMN-binding domain LP316_07910 PF03116 NQR2, RnfD, RnfE family LP316_07915 PF10531 SLBB domain LP316_07915 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LP316_07915 PF12838 4Fe-4S dicluster domain LP316_07915 PF13375 RnfC Barrel sandwich hybrid domain LP316_07920 PF04060 Putative Fe-S cluster LP316_07925 PF02508 Rnf-Nqr subunit, membrane protein LP316_07935 PF02576 RimP N-terminal domain LP316_07935 PF17384 RimP C-terminal SH3 domain LP316_07940 PF13184 NusA-like KH domain LP316_07940 PF08529 NusA N-terminal domain LP316_07940 PF00575 S1 RNA binding domain LP316_07945 PF00009 Elongation factor Tu GTP binding domain LP316_07945 PF11987 Translation-initiation factor 2 LP316_07945 PF04760 Translation initiation factor IF-2, N-terminal region LP316_07945 PF08364 Bacterial translation initiation factor IF-2 associated region LP316_07950 PF02033 Ribosome-binding factor A LP316_07955 PF09157 Pseudouridine synthase II TruB, C-terminal LP316_07955 PF01509 TruB family pseudouridylate synthase (N terminal domain) LP316_07955 PF16198 tRNA pseudouridylate synthase B C-terminal domain LP316_07960 PF00312 Ribosomal protein S15 LP316_07970 PF00575 S1 RNA binding domain LP316_07970 PF03725 3' exoribonuclease family, domain 2 LP316_07970 PF01138 3' exoribonuclease family, domain 1 LP316_07970 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LP316_07970 PF00013 KH domain LP316_07975 PF13181 Tetratricopeptide repeat LP316_07975 PF07719 Tetratricopeptide repeat LP316_07990 PF00266 Aminotransferase class-V LP316_07995 PF00899 ThiF family LP316_08000 PF00285 Citrate synthase, C-terminal domain LP316_08005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LP316_08010 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LP316_08015 PF02910 Fumarate reductase flavoprotein C-term LP316_08015 PF00890 FAD binding domain LP316_08020 PF13085 2Fe-2S iron-sulfur cluster binding domain LP316_08025 PF16078 2-oxoglutarate dehydrogenase N-terminus LP316_08025 PF00676 Dehydrogenase E1 component LP316_08025 PF16870 2-oxoglutarate dehydrogenase C-terminal LP316_08025 PF02779 Transketolase, pyrimidine binding domain LP316_08030 PF02817 e3 binding domain LP316_08030 PF00364 Biotin-requiring enzyme LP316_08030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LP316_08045 PF08442 ATP-grasp domain LP316_08045 PF00549 CoA-ligase LP316_08050 PF02629 CoA binding domain LP316_08050 PF00549 CoA-ligase LP316_08085 PF09905 DNA-binding protein VF530 LP316_08110 PF00749 tRNA synthetases class I (E and Q), catalytic domain LP316_08110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LP316_08115 PF01475 Ferric uptake regulator family LP316_08125 PF00258 Flavodoxin LP316_08130 PF01402 Ribbon-helix-helix protein, copG family LP316_08140 PF00364 Biotin-requiring enzyme LP316_08140 PF00561 alpha/beta hydrolase fold LP316_08145 PF03925 SeqA protein C-terminal domain LP316_08145 PF17206 SeqA protein N-terminal domain LP316_08150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LP316_08150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LP316_08150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LP316_08150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LP316_08155 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LP316_08160 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal LP316_08160 PF00676 Dehydrogenase E1 component LP316_08165 PF02780 Transketolase, C-terminal domain LP316_08165 PF02779 Transketolase, pyrimidine binding domain LP316_08170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LP316_08170 PF00364 Biotin-requiring enzyme LP316_08170 PF02817 e3 binding domain LP316_08180 PF03600 Citrate transporter LP316_08185 PF00069 Protein kinase domain LP316_08195 PF13286 Phosphohydrolase-associated domain LP316_08195 PF01966 HD domain LP316_08205 PF08003 Protein of unknown function (DUF1698) LP316_08210 PF13649 Methyltransferase domain LP316_08215 PF03707 Bacterial signalling protein N terminal repeat LP316_08215 PF00563 EAL domain LP316_08215 PF00990 Diguanylate cyclase, GGDEF domain LP316_08220 PF00152 tRNA synthetases class II (D, K and N) LP316_08220 PF01336 OB-fold nucleic acid binding domain LP316_08220 PF02938 GAD domain LP316_08225 PF02075 Crossover junction endodeoxyribonuclease RuvC LP316_08230 PF07499 RuvA, C-terminal domain LP316_08230 PF01330 RuvA N terminal domain LP316_08235 PF05496 Holliday junction DNA helicase RuvB P-loop domain LP316_08235 PF05491 RuvB C-terminal winged helix domain LP316_08235 PF17864 RuvB AAA lid domain LP316_08250 PF03061 Thioesterase superfamily LP316_08255 PF01618 MotA/TolQ/ExbB proton channel family LP316_08260 PF02472 Biopolymer transport protein ExbD/TolR LP316_08270 PF07676 WD40-like Beta Propeller Repeat LP316_08270 PF04052 TolB amino-terminal domain LP316_08275 PF00691 OmpA family LP316_08280 PF13174 Tetratricopeptide repeat LP316_08280 PF16331 TolA binding protein trimerisation LP316_08300 PF02445 Quinolinate synthetase A protein LP316_08315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_08315 PF03466 LysR substrate binding domain LP316_08320 PF00884 Sulfatase LP316_08325 PF12850 Calcineurin-like phosphoesterase superfamily domain LP316_08330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LP316_08335 PF09190 DALR domain LP316_08335 PF01406 tRNA synthetases class I (C) catalytic domain LP316_08350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LP316_08350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LP316_08380 PF05697 Bacterial trigger factor protein (TF) LP316_08380 PF05698 Bacterial trigger factor protein (TF) C-terminus LP316_08380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_08385 PF00574 Clp protease LP316_08390 PF10431 C-terminal, D2-small domain, of ClpB protein LP316_08390 PF06689 ClpX C4-type zinc finger LP316_08390 PF07724 AAA domain (Cdc48 subfamily) LP316_08395 PF00004 ATPase family associated with various cellular activities (AAA) LP316_08395 PF05362 Lon protease (S16) C-terminal proteolytic domain LP316_08395 PF02190 ATP-dependent protease La (LON) substrate-binding domain LP316_08400 PF00216 Bacterial DNA-binding protein LP316_08415 PF00885 6,7-dimethyl-8-ribityllumazine synthase LP316_08420 PF01029 NusB family LP316_08425 PF02769 AIR synthase related protein, C-terminal domain LP316_08425 PF00586 AIR synthase related protein, N-terminal domain LP316_08430 PF04608 Phosphatidylglycerophosphatase A LP316_08435 PF01548 Transposase LP316_08435 PF02371 Transposase IS116/IS110/IS902 family LP316_08440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LP316_08440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LP316_08445 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LP316_08450 PF01812 5-formyltetrahydrofolate cyclo-ligase family LP316_08455 PF00854 POT family LP316_08460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LP316_08460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LP316_08460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LP316_08465 PF01370 NAD dependent epimerase/dehydratase family LP316_08470 PF00953 Glycosyl transferase family 4 LP316_08480 PF02563 Polysaccharide biosynthesis/export protein LP316_08480 PF10531 SLBB domain LP316_08485 PF01061 ABC-2 type transporter LP316_08490 PF00005 ABC transporter LP316_08500 PF02350 UDP-N-acetylglucosamine 2-epimerase LP316_08505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LP316_08505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LP316_08505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LP316_08550 PF00535 Glycosyl transferase family 2 LP316_08550 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LP316_08570 PF00483 Nucleotidyl transferase LP316_08575 PF16363 GDP-mannose 4,6 dehydratase LP316_08580 PF00483 Nucleotidyl transferase LP316_08580 PF01050 Mannose-6-phosphate isomerase LP316_08585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LP316_08585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LP316_08585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LP316_08585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LP316_08590 PF01507 Phosphoadenosine phosphosulfate reductase family LP316_08600 PF00009 Elongation factor Tu GTP binding domain LP316_08605 PF02080 TrkA-C domain LP316_08605 PF03600 Citrate transporter LP316_08620 PF16363 GDP-mannose 4,6 dehydratase LP316_08625 PF02371 Transposase IS116/IS110/IS902 family LP316_08625 PF01548 Transposase LP316_08630 PF04542 Sigma-70 region 2 LP316_08630 PF08281 Sigma-70, region 4 LP316_08640 PF00474 Sodium:solute symporter family LP316_08645 PF08668 HDOD domain LP316_08645 PF00563 EAL domain LP316_08660 PF13519 von Willebrand factor type A domain LP316_08660 PF07584 Aerotolerance regulator N-terminal LP316_08675 PF01882 Protein of unknown function DUF58 LP316_08680 PF17863 AAA lid domain LP316_08680 PF07726 ATPase family associated with various cellular activities (AAA) LP316_08685 PF02803 Thiolase, C-terminal domain LP316_08685 PF00108 Thiolase, N-terminal domain LP316_08690 PF00378 Enoyl-CoA hydratase/isomerase LP316_08690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LP316_08690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LP316_08705 PF03707 Bacterial signalling protein N terminal repeat LP316_08705 PF00990 Diguanylate cyclase, GGDEF domain LP316_08705 PF00563 EAL domain LP316_08710 PF16187 Middle or third domain of peptidase_M16 LP316_08710 PF05193 Peptidase M16 inactive domain LP316_08710 PF00675 Insulinase (Peptidase family M16) LP316_08715 PF00300 Histidine phosphatase superfamily (branch 1) LP316_08720 PF01713 Smr domain LP316_08725 PF05175 Methyltransferase small domain LP316_08730 PF01264 Chorismate synthase LP316_08735 PF04055 Radical SAM superfamily LP316_08735 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LP316_08740 PF03099 Biotin/lipoate A/B protein ligase family LP316_08745 PF04359 Protein of unknown function (DUF493) LP316_08750 PF07943 Penicillin-binding protein 5, C-terminal domain LP316_08750 PF00768 D-alanyl-D-alanine carboxypeptidase LP316_08755 PF05036 Sporulation related domain LP316_08755 PF03330 Lytic transglycolase LP316_08760 PF01098 Cell cycle protein LP316_08765 PF03717 Penicillin-binding Protein dimerisation domain LP316_08765 PF00905 Penicillin binding protein transpeptidase domain LP316_08770 PF02590 Predicted SPOUT methyltransferase LP316_08780 PF01467 Cytidylyltransferase-like LP316_08790 PF04390 Lipopolysaccharide-assembly LP316_08795 PF08264 Anticodon-binding domain of tRNA LP316_08795 PF00133 tRNA synthetases class I (I, L, M and V) LP316_08795 PF13603 Leucyl-tRNA synthetase, Domain 2 LP316_08800 PF07295 Zinc-ribbon containing domain LP316_08815 PF05362 Lon protease (S16) C-terminal proteolytic domain LP316_08815 PF13654 AAA domain LP316_08820 PF00271 Helicase conserved C-terminal domain LP316_08820 PF12343 Cold shock protein DEAD box A LP316_08820 PF00270 DEAD/DEAH box helicase LP316_08820 PF03880 DbpA RNA binding domain LP316_08825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LP316_08830 PF00484 Carbonic anhydrase LP316_08845 PF00672 HAMP domain LP316_08845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_08850 PF04371 Porphyromonas-type peptidyl-arginine deiminase LP316_08860 PF02687 FtsX-like permease family LP316_08860 PF12704 MacB-like periplasmic core domain LP316_08865 PF00005 ABC transporter LP316_08870 PF02687 FtsX-like permease family LP316_08870 PF12704 MacB-like periplasmic core domain LP316_08880 PF13567 Domain of unknown function (DUF4131) LP316_08880 PF00753 Metallo-beta-lactamase superfamily LP316_08880 PF03772 Competence protein LP316_08885 PF00664 ABC transporter transmembrane region LP316_08885 PF00005 ABC transporter LP316_08890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LP316_08895 PF03966 Trm112p-like protein LP316_08900 PF02348 Cytidylyltransferase LP316_08905 PF00106 short chain dehydrogenase LP316_08910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LP316_08915 PF10459 Peptidase S46 LP316_08920 PF01494 FAD binding domain LP316_08925 PF00266 Aminotransferase class-V LP316_08935 PF06052 3-hydroxyanthranilic acid dioxygenase LP316_08940 PF01042 Endoribonuclease L-PSP LP316_08945 PF00171 Aldehyde dehydrogenase family LP316_08950 PF00106 short chain dehydrogenase LP316_08955 PF00561 alpha/beta hydrolase fold LP316_08965 PF00011 Hsp20/alpha crystallin family LP316_08970 PF08534 Redoxin LP316_08975 PF00072 Response regulator receiver domain LP316_08975 PF01339 CheB methylesterase LP316_08980 PF05230 MASE2 domain LP316_08980 PF00990 Diguanylate cyclase, GGDEF domain LP316_08985 PF07969 Amidohydrolase family LP316_08990 PF00795 Carbon-nitrogen hydrolase LP316_08995 PF00571 CBS domain LP316_08995 PF03471 Transporter associated domain LP316_09000 PF02130 Uncharacterized protein family UPF0054 LP316_09005 PF02562 PhoH-like protein LP316_09010 PF04055 Radical SAM superfamily LP316_09010 PF01938 TRAM domain LP316_09010 PF00919 Uncharacterized protein family UPF0004 LP316_09030 PF01494 FAD binding domain LP316_09075 PF01926 50S ribosome-binding GTPase LP316_09075 PF06071 Protein of unknown function (DUF933) LP316_09080 PF01195 Peptidyl-tRNA hydrolase LP316_09085 PF14693 Ribosomal protein TL5, C-terminal domain LP316_09085 PF01386 Ribosomal L25p family LP316_09095 PF04116 Fatty acid hydroxylase superfamily LP316_09100 PF12833 Helix-turn-helix domain LP316_09110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LP316_09110 PF14572 Phosphoribosyl synthetase-associated domain LP316_09115 PF00288 GHMP kinases N terminal domain LP316_09120 PF03550 Outer membrane lipoprotein LolB LP316_09125 PF01488 Shikimate / quinate 5-dehydrogenase LP316_09125 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LP316_09125 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LP316_09130 PF03462 PCRF domain LP316_09130 PF00472 RF-1 domain LP316_09135 PF13847 Methyltransferase domain LP316_09135 PF17827 PrmC N-terminal domain LP316_09145 PF13369 Transglutaminase-like superfamily LP316_09155 PF00793 DAHP synthetase I family LP316_09165 PF03466 LysR substrate binding domain LP316_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_09180 PF01728 FtsJ-like methyltransferase LP316_09180 PF18125 RlmM ferredoxin-like domain LP316_09185 PF00990 Diguanylate cyclase, GGDEF domain LP316_09190 PF00180 Isocitrate/isopropylmalate dehydrogenase LP316_09190 PF18324 Hypothetical protein TT1725 LP316_09200 PF01367 5'-3' exonuclease, C-terminal SAM fold LP316_09200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LP316_09205 PF11892 Domain of unknown function (DUF3412) LP316_09205 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LP316_09205 PF03641 Possible lysine decarboxylase LP316_09210 PF00990 Diguanylate cyclase, GGDEF domain LP316_09210 PF00072 Response regulator receiver domain LP316_09220 PF14489 QueF-like protein LP316_09220 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LP316_09225 PF07348 Syd protein (SUKH-2) LP316_09265 PF00155 Aminotransferase class I and II LP316_09275 PF03129 Anticodon binding domain LP316_09275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LP316_09275 PF04073 Aminoacyl-tRNA editing domain LP316_09300 PF00356 Bacterial regulatory proteins, lacI family LP316_09310 PF00232 Glycosyl hydrolase family 1 LP316_09315 PF07690 Major Facilitator Superfamily LP316_09320 PF14310 Fibronectin type III-like domain LP316_09320 PF00933 Glycosyl hydrolase family 3 N terminal domain LP316_09320 PF01915 Glycosyl hydrolase family 3 C-terminal domain LP316_09335 PF04820 Tryptophan halogenase LP316_09350 PF04820 Tryptophan halogenase LP316_09375 PF01810 LysE type translocator LP316_09390 PF00376 MerR family regulatory protein LP316_09390 PF09278 MerR, DNA binding LP316_09405 PF01842 ACT domain LP316_09405 PF00696 Amino acid kinase family LP316_09415 PF00733 Asparagine synthase LP316_09415 PF13537 Glutamine amidotransferase domain LP316_09425 PF01476 LysM domain LP316_09425 PF01464 Transglycosylase SLT domain LP316_09430 PF16123 Hydroxyacylglutathione hydrolase C-terminus LP316_09430 PF00753 Metallo-beta-lactamase superfamily LP316_09435 PF08241 Methyltransferase domain LP316_09440 PF00675 Insulinase (Peptidase family M16) LP316_09440 PF05193 Peptidase M16 inactive domain LP316_09445 PF00593 TonB dependent receptor LP316_09445 PF07715 TonB-dependent Receptor Plug Domain LP316_09450 PF01784 NIF3 (NGG1p interacting factor 3) LP316_09460 PF02515 CoA-transferase family III LP316_09465 PF00501 AMP-binding enzyme LP316_09465 PF13193 AMP-binding enzyme C-terminal domain LP316_09480 PF00593 TonB dependent receptor LP316_09480 PF07715 TonB-dependent Receptor Plug Domain LP316_09500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_09500 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_09500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_09535 PF00749 tRNA synthetases class I (E and Q), catalytic domain LP316_09545 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LP316_09545 PF06165 Glycosyltransferase family 36 LP316_09555 PF00395 S-layer homology domain LP316_09555 PF00331 Glycosyl hydrolase family 10 LP316_09555 PF02018 Carbohydrate binding domain LP316_09555 PF06452 Carbohydrate family 9 binding domain-like LP316_09560 PF14310 Fibronectin type III-like domain LP316_09560 PF00933 Glycosyl hydrolase family 3 N terminal domain LP316_09560 PF01915 Glycosyl hydrolase family 3 C-terminal domain LP316_09570 PF00583 Acetyltransferase (GNAT) family LP316_09570 PF00795 Carbon-nitrogen hydrolase LP316_09575 PF07969 Amidohydrolase family LP316_09580 PF00696 Amino acid kinase family LP316_09585 PF01765 Ribosome recycling factor LP316_09590 PF01255 Putative undecaprenyl diphosphate synthase LP316_09600 PF13288 DXP reductoisomerase C-terminal domain LP316_09600 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LP316_09600 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LP316_09605 PF02163 Peptidase family M50 LP316_09605 PF17820 PDZ domain LP316_09610 PF01103 Surface antigen LP316_09610 PF07244 Surface antigen variable number repeat LP316_09620 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LP316_09620 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_09625 PF07977 FabA-like domain LP316_09630 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LP316_09630 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_09635 PF02684 Lipid-A-disaccharide synthetase LP316_09640 PF01351 Ribonuclease HII LP316_09645 PF07733 Bacterial DNA polymerase III alpha NTPase domain LP316_09645 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LP316_09645 PF01336 OB-fold nucleic acid binding domain LP316_09645 PF02811 PHP domain LP316_09645 PF14579 Helix-hairpin-helix motif LP316_09650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LP316_09655 PF09179 TilS substrate binding domain LP316_09655 PF11734 TilS substrate C-terminal domain LP316_09655 PF01171 PP-loop family LP316_09660 PF00375 Sodium:dicarboxylate symporter family LP316_09665 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LP316_09670 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LP316_09680 PF04996 Succinylarginine dihydrolase LP316_09685 PF03976 Polyphosphate kinase 2 (PPK2) LP316_09705 PF05191 Adenylate kinase, active site lid LP316_09710 PF01124 MAPEG family LP316_09715 PF13673 Acetyltransferase (GNAT) domain LP316_09725 PF01502 Phosphoribosyl-AMP cyclohydrolase LP316_09725 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LP316_09730 PF00977 Histidine biosynthesis protein LP316_09735 PF00977 Histidine biosynthesis protein LP316_09740 PF00117 Glutamine amidotransferase class-I LP316_09745 PF08645 Polynucleotide kinase 3 phosphatase LP316_09745 PF00475 Imidazoleglycerol-phosphate dehydratase LP316_09750 PF00155 Aminotransferase class I and II LP316_09755 PF00815 Histidinol dehydrogenase LP316_09760 PF08029 HisG, C-terminal domain LP316_09760 PF01634 ATP phosphoribosyltransferase LP316_09770 PF13307 Helicase C-terminal domain LP316_09770 PF06733 DEAD_2 LP316_09775 PF00814 Glycoprotease family LP316_09790 PF00561 alpha/beta hydrolase fold LP316_09795 PF00501 AMP-binding enzyme LP316_09795 PF13193 AMP-binding enzyme C-terminal domain LP316_09800 PF00106 short chain dehydrogenase LP316_09805 PF12262 Bacterial virulence factor lipase N-terminal LP316_09810 PF01343 Peptidase family S49 LP316_09810 PF08496 Peptidase family S49 N-terminal LP316_09815 PF05724 Thiopurine S-methyltransferase (TPMT) LP316_09820 PF00375 Sodium:dicarboxylate symporter family LP316_09830 PF00491 Arginase family LP316_09835 PF01131 DNA topoisomerase LP316_09835 PF01751 Toprim domain LP316_09835 PF08272 Topoisomerase I zinc-ribbon-like LP316_09835 PF01396 Topoisomerase DNA binding C4 zinc finger LP316_09840 PF01047 MarR family LP316_09845 PF00255 Glutathione peroxidase LP316_09850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LP316_09850 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LP316_09860 PF08411 Exonuclease C-terminal LP316_09860 PF00929 Exonuclease LP316_09870 PF00990 Diguanylate cyclase, GGDEF domain LP316_09870 PF08448 PAS fold LP316_09880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_09880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LP316_09885 PF00929 Exonuclease LP316_09885 PF02811 PHP domain LP316_09885 PF11490 DNA polymerase III polC-type N-terminus II LP316_09885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LP316_09885 PF07733 Bacterial DNA polymerase III alpha NTPase domain LP316_09885 PF14579 Helix-hairpin-helix motif LP316_09900 PF02146 Sir2 family LP316_09910 PF10369 Small subunit of acetolactate synthase LP316_09915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LP316_09915 PF00205 Thiamine pyrophosphate enzyme, central domain LP316_09915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LP316_09925 PF00990 Diguanylate cyclase, GGDEF domain LP316_09925 PF01590 GAF domain LP316_09925 PF00563 EAL domain LP316_09925 PF00360 Phytochrome region LP316_09930 PF02625 XdhC and CoxI family LP316_09930 PF13478 XdhC Rossmann domain LP316_09940 PF00111 2Fe-2S iron-sulfur cluster binding domain LP316_09940 PF01799 [2Fe-2S] binding domain LP316_09980 PF00270 DEAD/DEAH box helicase LP316_09980 PF00271 Helicase conserved C-terminal domain LP316_09980 PF03461 TRCF domain LP316_09980 PF02559 CarD-like/TRCF domain LP316_09980 PF17757 UvrB interaction domain LP316_09985 PF00795 Carbon-nitrogen hydrolase LP316_09995 PF08338 Domain of unknown function (DUF1731) LP316_09995 PF01370 NAD dependent epimerase/dehydratase family LP316_10000 PF00290 Tryptophan synthase alpha chain LP316_10005 PF00291 Pyridoxal-phosphate dependent enzyme LP316_10010 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LP316_10010 PF00218 Indole-3-glycerol phosphate synthase LP316_10015 PF00591 Glycosyl transferase family, a/b domain LP316_10015 PF02885 Glycosyl transferase family, helical bundle domain LP316_10020 PF00117 Glutamine amidotransferase class-I LP316_10025 PF00425 chorismate binding enzyme LP316_10025 PF04715 Anthranilate synthase component I, N terminal region LP316_10030 PF18152 DAHP synthase ferredoxin-like domain LP316_10030 PF00793 DAHP synthetase I family LP316_10035 PF02811 PHP domain LP316_10045 PF00378 Enoyl-CoA hydratase/isomerase LP316_10050 PF01300 Telomere recombination LP316_10055 PF02616 Segregation and condensation protein ScpA LP316_10060 PF04079 Segregation and condensation complex subunit ScpB LP316_10065 PF01479 S4 domain LP316_10065 PF00849 RNA pseudouridylate synthase LP316_10070 PF00570 HRDC domain LP316_10070 PF01612 3'-5' exonuclease LP316_10075 PF05166 YcgL domain LP316_10080 PF13406 Transglycosylase SLT domain LP316_10085 PF03692 Putative zinc- or iron-chelating domain LP316_10090 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_10095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LP316_10095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LP316_10095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LP316_10100 PF02233 NAD(P) transhydrogenase beta subunit LP316_10105 PF01235 Sodium:alanine symporter family LP316_10115 PF00271 Helicase conserved C-terminal domain LP316_10115 PF00270 DEAD/DEAH box helicase LP316_10130 PF00583 Acetyltransferase (GNAT) family LP316_10135 PF01699 Sodium/calcium exchanger protein LP316_10140 PF06146 Phosphate-starvation-inducible E LP316_10165 PF00990 Diguanylate cyclase, GGDEF domain LP316_10170 PF00999 Sodium/hydrogen exchanger family LP316_10170 PF02254 TrkA-N domain LP316_10170 PF02080 TrkA-C domain LP316_10175 PF02798 Glutathione S-transferase, N-terminal domain LP316_10190 PF01144 Coenzyme A transferase LP316_10195 PF01144 Coenzyme A transferase LP316_10200 PF00682 HMGL-like LP316_10205 PF00289 Biotin carboxylase, N-terminal domain LP316_10205 PF00364 Biotin-requiring enzyme LP316_10205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LP316_10205 PF18140 Propionyl-coenzyme A carboxylase BT domain LP316_10205 PF02785 Biotin carboxylase C-terminal domain LP316_10210 PF00378 Enoyl-CoA hydratase/isomerase LP316_10215 PF01039 Carboxyl transferase domain LP316_10220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_10220 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_10220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_10225 PF00376 MerR family regulatory protein LP316_10225 PF09278 MerR, DNA binding LP316_10230 PF02803 Thiolase, C-terminal domain LP316_10230 PF00108 Thiolase, N-terminal domain LP316_10235 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_10235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_10235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_10240 PF00378 Enoyl-CoA hydratase/isomerase LP316_10245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LP316_10245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LP316_10245 PF00378 Enoyl-CoA hydratase/isomerase LP316_10250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LP316_10250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LP316_10295 PF00005 ABC transporter LP316_10295 PF12848 ABC transporter LP316_10300 PF11842 Domain of unknown function (DUF3362) LP316_10300 PF04055 Radical SAM superfamily LP316_10300 PF08497 Radical SAM N-terminal LP316_10305 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LP316_10305 PF00326 Prolyl oligopeptidase family LP316_10340 PF00291 Pyridoxal-phosphate dependent enzyme LP316_10345 PF00004 ATPase family associated with various cellular activities (AAA) LP316_10345 PF07724 AAA domain (Cdc48 subfamily) LP316_10345 PF10431 C-terminal, D2-small domain, of ClpB protein LP316_10345 PF02861 Clp amino terminal domain, pathogenicity island component LP316_10345 PF17871 AAA lid domain LP316_10355 PF06271 RDD family LP316_10365 PF02142 MGS-like domain LP316_10380 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LP316_10400 PF12320 Type 5 capsule protein repressor C-terminal domain LP316_10400 PF00149 Calcineurin-like phosphoesterase LP316_10405 PF13476 AAA domain LP316_10410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_10415 PF01979 Amidohydrolase family LP316_10425 PF01980 tRNA-methyltransferase O LP316_10425 PF18389 TrmO C-terminal domain LP316_10435 PF00375 Sodium:dicarboxylate symporter family LP316_10450 PF00873 AcrB/AcrD/AcrF family LP316_10460 PF00581 Rhodanese-like domain LP316_10460 PF17773 UPF0176 acylphosphatase like domain LP316_10475 PF00990 Diguanylate cyclase, GGDEF domain LP316_10475 PF00563 EAL domain LP316_10475 PF03707 Bacterial signalling protein N terminal repeat LP316_10480 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LP316_10490 PF01588 Putative tRNA binding domain LP316_10490 PF09334 tRNA synthetases class I (M) LP316_10495 PF10609 NUBPL iron-transfer P-loop NTPase LP316_10500 PF00692 dUTPase LP316_10505 PF01933 Uncharacterised protein family UPF0052 LP316_10540 PF00563 EAL domain LP316_10540 PF08668 HDOD domain LP316_10545 PF13472 GDSL-like Lipase/Acylhydrolase family LP316_10550 PF00005 ABC transporter LP316_10560 PF01594 AI-2E family transporter LP316_10570 PF03795 YCII-related domain LP316_10575 PF04279 Intracellular septation protein A LP316_10585 PF00072 Response regulator receiver domain LP316_10590 PF09078 CheY binding LP316_10590 PF02895 Signal transducing histidine kinase, homodimeric domain LP316_10590 PF01627 Hpt domain LP316_10590 PF01584 CheW-like domain LP316_10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_10595 PF01584 CheW-like domain LP316_10600 PF01584 CheW-like domain LP316_10605 PF02203 Tar ligand binding domain homologue LP316_10605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_10605 PF00672 HAMP domain LP316_10610 PF03705 CheR methyltransferase, all-alpha domain LP316_10610 PF01739 CheR methyltransferase, SAM binding domain LP316_10615 PF03975 CheD chemotactic sensory transduction LP316_10620 PF00072 Response regulator receiver domain LP316_10620 PF01339 CheB methylesterase LP316_10625 PF13466 STAS domain LP316_10630 PF00072 Response regulator receiver domain LP316_10630 PF02954 Bacterial regulatory protein, Fis family LP316_10630 PF00158 Sigma-54 interaction domain LP316_10635 PF00563 EAL domain LP316_10635 PF00990 Diguanylate cyclase, GGDEF domain LP316_10635 PF00360 Phytochrome region LP316_10635 PF01590 GAF domain LP316_10640 PF00486 Transcriptional regulatory protein, C terminal LP316_10640 PF00072 Response regulator receiver domain LP316_10650 PF00268 Ribonucleotide reductase, small chain LP316_10655 PF00317 Ribonucleotide reductase, all-alpha domain LP316_10655 PF02867 Ribonucleotide reductase, barrel domain LP316_10655 PF03477 ATP cone domain LP316_10660 PF13419 Haloacid dehalogenase-like hydrolase LP316_10685 PF00521 DNA gyrase/topoisomerase IV, subunit A LP316_10685 PF03989 DNA gyrase C-terminal domain, beta-propeller LP316_10690 PF00266 Aminotransferase class-V LP316_10695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LP316_10700 PF02224 Cytidylate kinase LP316_10705 PF00575 S1 RNA binding domain LP316_10710 PF00216 Bacterial DNA-binding protein LP316_10720 PF18073 Rubredoxin metal binding domain LP316_10725 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LP316_10730 PF10531 SLBB domain LP316_10740 PF00849 RNA pseudouridylate synthase LP316_10740 PF01479 S4 domain LP316_10745 PF02545 Maf-like protein LP316_10750 PF02620 Large ribosomal RNA subunit accumulation protein YceD LP316_10755 PF01783 Ribosomal L32p protein family LP316_10760 PF02504 Fatty acid synthesis protein LP316_10765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LP316_10765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LP316_10770 PF00698 Acyl transferase domain LP316_10780 PF00550 Phosphopantetheine attachment site LP316_10785 PF00109 Beta-ketoacyl synthase, N-terminal domain LP316_10785 PF02801 Beta-ketoacyl synthase, C-terminal domain LP316_10790 PF01063 Amino-transferase class IV LP316_10795 PF02618 YceG-like family LP316_10800 PF02223 Thymidylate kinase LP316_10805 PF09115 DNA polymerase III, delta subunit, C terminal LP316_10815 PF01026 TatD related DNase LP316_10820 PF07670 Nucleoside recognition LP316_10825 PF00392 Bacterial regulatory proteins, gntR family LP316_10825 PF07729 FCD domain LP316_10835 PF00285 Citrate synthase, C-terminal domain LP316_10840 PF00330 Aconitase family (aconitate hydratase) LP316_10840 PF00694 Aconitase C-terminal domain LP316_10845 PF04303 PrpF protein LP316_10850 PF01235 Sodium:alanine symporter family LP316_10870 PF00873 AcrB/AcrD/AcrF family LP316_10880 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LP316_10880 PF18381 YcaO cyclodehydratase C-terminal domain LP316_10895 PF02913 FAD linked oxidases, C-terminal domain LP316_10895 PF01565 FAD binding domain LP316_10895 PF13183 4Fe-4S dicluster domain LP316_10900 PF00245 Alkaline phosphatase LP316_10910 PF08362 YcdC-like protein, C-terminal region LP316_10910 PF00440 Bacterial regulatory proteins, tetR family LP316_10915 PF00593 TonB dependent receptor LP316_10920 PF04957 Ribosome modulation factor LP316_10925 PF07977 FabA-like domain LP316_10935 PF00196 Bacterial regulatory proteins, luxR family LP316_10935 PF00072 Response regulator receiver domain LP316_10940 PF01541 GIY-YIG catalytic domain LP316_10940 PF08459 UvrC Helix-hairpin-helix N-terminal LP316_10940 PF02151 UvrB/uvrC motif LP316_10945 PF01066 CDP-alcohol phosphatidyltransferase LP316_10995 PF07715 TonB-dependent Receptor Plug Domain LP316_10995 PF00593 TonB dependent receptor LP316_11000 PF01451 Low molecular weight phosphotyrosine protein phosphatase LP316_11015 PF00710 Asparaginase, N-terminal LP316_11015 PF17763 Glutaminase/Asparaginase C-terminal domain LP316_11020 PF01343 Peptidase family S49 LP316_11030 PF00881 Nitroreductase family LP316_11035 PF00152 tRNA synthetases class II (D, K and N) LP316_11035 PF01336 OB-fold nucleic acid binding domain LP316_11045 PF00202 Aminotransferase class-III LP316_11050 PF04055 Radical SAM superfamily LP316_11050 PF06968 Biotin and Thiamin Synthesis associated domain LP316_11055 PF00155 Aminotransferase class I and II LP316_11060 PF08241 Methyltransferase domain LP316_11070 PF03575 Peptidase family S51 LP316_11080 PF00224 Pyruvate kinase, barrel domain LP316_11080 PF02887 Pyruvate kinase, alpha/beta domain LP316_11085 PF01418 Helix-turn-helix domain, rpiR family LP316_11085 PF01380 SIS domain LP316_11090 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LP316_11090 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LP316_11095 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LP316_11100 PF00920 Dehydratase family LP316_11105 PF02685 Glucokinase LP316_11110 PF01081 KDPG and KHG aldolase LP316_11125 PF00990 Diguanylate cyclase, GGDEF domain LP316_11125 PF00563 EAL domain LP316_11125 PF08447 PAS fold LP316_11125 PF08448 PAS fold LP316_11130 PF00990 Diguanylate cyclase, GGDEF domain LP316_11130 PF08448 PAS fold LP316_11145 PF07208 Protein of unknown function (DUF1414) LP316_11150 PF04245 37-kD nucleoid-associated bacterial protein LP316_11155 PF01979 Amidohydrolase family LP316_11165 PF01551 Peptidase family M23 LP316_11165 PF01476 LysM domain LP316_11180 PF00384 Molybdopterin oxidoreductase LP316_11180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LP316_11180 PF04324 BFD-like [2Fe-2S] binding domain LP316_11180 PF01568 Molydopterin dinucleotide binding domain LP316_11190 PF18267 Rubredoxin NAD+ reductase C-terminal domain LP316_11190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LP316_11190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LP316_11190 PF04324 BFD-like [2Fe-2S] binding domain LP316_11190 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_11190 PF13806 Rieske-like [2Fe-2S] domain LP316_11200 PF00005 ABC transporter LP316_11205 PF00528 Binding-protein-dependent transport system inner membrane component LP316_11215 PF03861 ANTAR domain LP316_11215 PF08376 Nitrate and nitrite sensing LP316_11230 PF04397 LytTr DNA-binding domain LP316_11230 PF00072 Response regulator receiver domain LP316_11235 PF06580 Histidine kinase LP316_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_11235 PF00672 HAMP domain LP316_11235 PF02743 Cache domain LP316_11245 PF04973 Nicotinamide mononucleotide transporter LP316_11255 PF07715 TonB-dependent Receptor Plug Domain LP316_11260 PF01230 HIT domain LP316_11265 PF01053 Cys/Met metabolism PLP-dependent enzyme LP316_11270 PF00136 DNA polymerase family B LP316_11270 PF03104 DNA polymerase family B, exonuclease domain LP316_11275 PF13307 Helicase C-terminal domain LP316_11275 PF06733 DEAD_2 LP316_11295 PF04055 Radical SAM superfamily LP316_11300 PF06508 Queuosine biosynthesis protein QueC LP316_11310 PF03971 Monomeric isocitrate dehydrogenase LP316_11315 PF00849 RNA pseudouridylate synthase LP316_11320 PF00293 NUDIX domain LP316_11330 PF04356 Protein of unknown function (DUF489) LP316_11335 PF00206 Lyase LP316_11335 PF08328 Adenylosuccinate lyase C-terminal LP316_11340 PF08007 Cupin superfamily protein LP316_11350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LP316_11350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LP316_11355 PF00391 PEP-utilising enzyme, mobile domain LP316_11355 PF02896 PEP-utilising enzyme, TIM barrel domain LP316_11355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LP316_11360 PF03618 Kinase/pyrophosphorylase LP316_11365 PF00793 DAHP synthetase I family LP316_11375 PF04143 Sulphur transport LP316_11380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LP316_11380 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_11385 PF00563 EAL domain LP316_11385 PF00990 Diguanylate cyclase, GGDEF domain LP316_11385 PF13426 PAS domain LP316_11390 PF00793 DAHP synthetase I family LP316_11395 PF00962 Adenosine/AMP deaminase LP316_11405 PF01048 Phosphorylase superfamily LP316_11415 PF00593 TonB dependent receptor LP316_11415 PF07715 TonB-dependent Receptor Plug Domain LP316_11420 PF01676 Metalloenzyme superfamily LP316_11425 PF00485 Phosphoribulokinase / Uridine kinase family LP316_11430 PF01773 Na+ dependent nucleoside transporter N-terminus LP316_11430 PF07670 Nucleoside recognition LP316_11430 PF07662 Na+ dependent nucleoside transporter C-terminus LP316_11435 PF01791 DeoC/LacD family aldolase LP316_11440 PF00265 Thymidine kinase LP316_11470 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system LP316_11475 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA LP316_11480 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LP316_11485 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LP316_11490 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LP316_11490 PF00591 Glycosyl transferase family, a/b domain LP316_11490 PF02885 Glycosyl transferase family, helical bundle domain LP316_11495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LP316_11505 PF12848 ABC transporter LP316_11505 PF16326 ABC transporter C-terminal domain LP316_11505 PF00005 ABC transporter LP316_11515 PF10672 S-adenosylmethionine-dependent methyltransferase LP316_11515 PF01170 Putative RNA methylase family UPF0020 LP316_11515 PF02926 THUMP domain LP316_11555 PF00708 Acylphosphatase LP316_11560 PF10672 S-adenosylmethionine-dependent methyltransferase LP316_11560 PF17785 PUA-like domain LP316_11565 PF01738 Dienelactone hydrolase family LP316_11575 PF11898 Domain of unknown function (DUF3418) LP316_11575 PF00271 Helicase conserved C-terminal domain LP316_11575 PF04408 Helicase associated domain (HA2) LP316_11575 PF00270 DEAD/DEAH box helicase LP316_11575 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LP316_11580 PF07085 DRTGG domain LP316_11580 PF00392 Bacterial regulatory proteins, gntR family LP316_11580 PF00571 CBS domain LP316_11580 PF03061 Thioesterase superfamily LP316_11585 PF01112 Asparaginase LP316_11595 PF13538 UvrD-like helicase C-terminal domain LP316_11600 PF00580 UvrD/REP helicase N-terminal domain LP316_11600 PF12705 PD-(D/E)XK nuclease superfamily LP316_11600 PF13361 UvrD-like helicase C-terminal domain LP316_11605 PF17946 RecC C-terminal domain LP316_11630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LP316_11635 PF00873 AcrB/AcrD/AcrF family LP316_11640 PF01022 Bacterial regulatory protein, arsR family LP316_11665 PF03422 Carbohydrate binding module (family 6) LP316_11665 PF02412 Thrombospondin type 3 repeat LP316_11670 PF05193 Peptidase M16 inactive domain LP316_11670 PF00675 Insulinase (Peptidase family M16) LP316_11675 PF00589 Phage integrase family LP316_11675 PF13495 Phage integrase, N-terminal SAM-like domain LP316_11755 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LP316_11810 PF00756 Putative esterase LP316_11815 PF00107 Zinc-binding dehydrogenase LP316_11815 PF08240 Alcohol dehydrogenase GroES-like domain LP316_11820 PF01180 Dihydroorotate dehydrogenase LP316_11825 PF05088 Bacterial NAD-glutamate dehydrogenase LP316_11840 PF07044 Protein of unknown function (DUF1329) LP316_11855 PF01433 Peptidase family M1 domain LP316_11855 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LP316_11855 PF11940 Domain of unknown function (DUF3458) Ig-like fold LP316_11860 PF03553 Na+/H+ antiporter family LP316_11865 PF11818 C-terminal domain of tail specific protease (DUF3340) LP316_11865 PF00595 PDZ domain LP316_11865 PF17804 Tail specific protease N-terminal domain LP316_11865 PF03572 Peptidase family S41 LP316_11870 PF17516 ProQ C-terminal domain LP316_11870 PF04352 ProQ/FINO family LP316_11880 PF13185 GAF domain LP316_11895 PF00958 GMP synthase C terminal domain LP316_11895 PF00117 Glutamine amidotransferase class-I LP316_11895 PF03352 Methyladenine glycosylase LP316_11895 PF13302 Acetyltransferase (GNAT) domain LP316_11895 PF13673 Acetyltransferase (GNAT) domain LP316_11900 PF01027 Inhibitor of apoptosis-promoting Bax1 LP316_11905 PF02635 DsrE/DsrF-like family LP316_11910 PF02635 DsrE/DsrF-like family LP316_11920 PF04358 DsrC like protein LP316_11930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LP316_11930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LP316_11940 PF01641 SelR domain LP316_11945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LP316_11945 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LP316_11950 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LP316_11950 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LP316_11965 PF07023 Protein of unknown function (DUF1315) LP316_11975 PF01235 Sodium:alanine symporter family LP316_11980 PF18027 Cytosolic carboxypeptidase N-terminal domain LP316_11980 PF00246 Zinc carboxypeptidase LP316_11990 PF02403 Seryl-tRNA synthetase N-terminal domain LP316_11990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LP316_11995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LP316_12000 PF12002 MgsA AAA+ ATPase C terminal LP316_12000 PF00004 ATPase family associated with various cellular activities (AAA) LP316_12000 PF16193 AAA C-terminal domain LP316_12005 PF03548 Outer membrane lipoprotein carrier protein LolA LP316_12010 PF01580 FtsK/SpoIIIE family LP316_12010 PF09397 Ftsk gamma domain LP316_12010 PF17854 FtsK alpha domain LP316_12010 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LP316_12015 PF01037 Lrp/AsnC ligand binding domain LP316_12020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LP316_12020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LP316_12025 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_12030 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LP316_12035 PF04377 Arginine-tRNA-protein transferase, C terminus LP316_12035 PF04376 Arginine-tRNA-protein transferase, N terminus LP316_12040 PF01176 Translation initiation factor 1A / IF-1 LP316_12045 PF02861 Clp amino terminal domain, pathogenicity island component LP316_12045 PF00004 ATPase family associated with various cellular activities (AAA) LP316_12045 PF07724 AAA domain (Cdc48 subfamily) LP316_12045 PF10431 C-terminal, D2-small domain, of ClpB protein LP316_12045 PF17871 AAA lid domain LP316_12050 PF02617 ATP-dependent Clp protease adaptor protein ClpS LP316_12055 PF00313 'Cold-shock' DNA-binding domain LP316_12060 PF00180 Isocitrate/isopropylmalate dehydrogenase LP316_12070 PF00271 Helicase conserved C-terminal domain LP316_12070 PF12344 Ultra-violet resistance protein B LP316_12070 PF02151 UvrB/uvrC motif LP316_12070 PF17757 UvrB interaction domain LP316_12070 PF04851 Type III restriction enzyme, res subunit LP316_12075 PF01554 MatE LP316_12095 PF01810 LysE type translocator LP316_12105 PF00115 Cytochrome C and Quinol oxidase polypeptide I LP316_12120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LP316_12120 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LP316_12130 PF00403 Heavy-metal-associated domain LP316_12145 PF13545 Crp-like helix-turn-helix domain LP316_12145 PF00027 Cyclic nucleotide-binding domain LP316_12150 PF00582 Universal stress protein family LP316_12155 PF01171 PP-loop family LP316_12160 PF00860 Permease family LP316_12180 PF01810 LysE type translocator LP316_12190 PF00664 ABC transporter transmembrane region LP316_12190 PF00005 ABC transporter LP316_12195 PF00216 Bacterial DNA-binding protein LP316_12200 PF03483 B3/4 domain LP316_12200 PF03484 tRNA synthetase B5 domain LP316_12200 PF03147 Ferredoxin-fold anticodon binding domain LP316_12200 PF01588 Putative tRNA binding domain LP316_12200 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LP316_12205 PF01409 tRNA synthetases class II core domain (F) LP316_12205 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LP316_12210 PF07308 Protein of unknown function (DUF1456) LP316_12215 PF01259 SAICAR synthetase LP316_12220 PF00453 Ribosomal protein L20 LP316_12225 PF01632 Ribosomal protein L35 LP316_12230 PF00707 Translation initiation factor IF-3, C-terminal domain LP316_12230 PF05198 Translation initiation factor IF-3, N-terminal domain LP316_12235 PF03129 Anticodon binding domain LP316_12235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LP316_12235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LP316_12235 PF02824 TGS domain LP316_12245 PF03881 Fructosamine kinase LP316_12255 PF00677 Lumazine binding domain LP316_12260 PF01554 MatE LP316_12270 PF00999 Sodium/hydrogen exchanger family LP316_12310 PF00884 Sulfatase LP316_12315 PF13180 PDZ domain LP316_12320 PF04545 Sigma-70, region 4 LP316_12320 PF04542 Sigma-70 region 2 LP316_12320 PF00140 Sigma-70 factor, region 1.2 LP316_12340 PF00005 ABC transporter LP316_12345 PF00011 Hsp20/alpha crystallin family LP316_12355 PF06965 Na+/H+ antiporter 1 LP316_12360 PF03466 LysR substrate binding domain LP316_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_12370 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase LP316_12405 PF07726 ATPase family associated with various cellular activities (AAA) LP316_12405 PF17863 AAA lid domain LP316_12410 PF00884 Sulfatase LP316_12425 PF00849 RNA pseudouridylate synthase LP316_12435 PF02225 PA domain LP316_12435 PF04389 Peptidase family M28 LP316_12445 PF08448 PAS fold LP316_12445 PF00990 Diguanylate cyclase, GGDEF domain LP316_12455 PF16177 Acetyl-coenzyme A synthetase N-terminus LP316_12455 PF13193 AMP-binding enzyme C-terminal domain LP316_12455 PF00501 AMP-binding enzyme LP316_12475 PF00474 Sodium:solute symporter family LP316_12485 PF00512 His Kinase A (phospho-acceptor) domain LP316_12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_12490 PF11849 Domain of unknown function (DUF3369) LP316_12495 PF00989 PAS fold LP316_12495 PF13426 PAS domain LP316_12495 PF13188 PAS domain LP316_12495 PF00512 His Kinase A (phospho-acceptor) domain LP316_12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_12500 PF00072 Response regulator receiver domain LP316_12500 PF00196 Bacterial regulatory proteins, luxR family LP316_12505 PF00889 Elongation factor TS LP316_12510 PF00318 Ribosomal protein S2 LP316_12520 PF00557 Metallopeptidase family M24 LP316_12525 PF01909 Nucleotidyltransferase domain LP316_12525 PF01842 ACT domain LP316_12525 PF08335 GlnD PII-uridylyltransferase LP316_12525 PF01966 HD domain LP316_12530 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LP316_12530 PF14602 Hexapeptide repeat of succinyl-transferase LP316_12530 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_12540 PF00849 RNA pseudouridylate synthase LP316_12540 PF04287 tRNA pseudouridine synthase C LP316_12575 PF01595 Cyclin M transmembrane N-terminal domain LP316_12575 PF00571 CBS domain LP316_12640 PF00593 TonB dependent receptor LP316_12640 PF07715 TonB-dependent Receptor Plug Domain LP316_12660 PF04237 YjbR LP316_12665 PF01479 S4 domain LP316_12665 PF00849 RNA pseudouridylate synthase LP316_12675 PF01381 Helix-turn-helix LP316_12685 PF00753 Metallo-beta-lactamase superfamily LP316_12695 PF00209 Sodium:neurotransmitter symporter family LP316_12700 PF01679 Proteolipid membrane potential modulator LP316_12705 PF00072 Response regulator receiver domain LP316_12705 PF00990 Diguanylate cyclase, GGDEF domain LP316_12710 PF02646 RmuC family LP316_12715 PF02080 TrkA-C domain LP316_12715 PF03600 Citrate transporter LP316_12725 PF04715 Anthranilate synthase component I, N terminal region LP316_12725 PF00425 chorismate binding enzyme LP316_12730 PF00293 NUDIX domain LP316_12735 PF03315 Serine dehydratase beta chain LP316_12735 PF03313 Serine dehydratase alpha chain LP316_12740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_12740 PF03466 LysR substrate binding domain LP316_12760 PF02810 SEC-C motif LP316_12770 PF00512 His Kinase A (phospho-acceptor) domain LP316_12770 PF00672 HAMP domain LP316_12770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_12775 PF00072 Response regulator receiver domain LP316_12775 PF00486 Transcriptional regulatory protein, C terminal LP316_12780 PF07690 Major Facilitator Superfamily LP316_12785 PF03372 Endonuclease/Exonuclease/phosphatase family LP316_12790 PF13847 Methyltransferase domain LP316_12795 PF04217 Protein of unknown function, DUF412 LP316_12800 PF00871 Acetokinase family LP316_12805 PF01515 Phosphate acetyl/butaryl transferase LP316_12805 PF07085 DRTGG domain LP316_12815 PF03960 ArsC family LP316_12820 PF01546 Peptidase family M20/M25/M40 LP316_12820 PF07687 Peptidase dimerisation domain LP316_12825 PF02557 D-alanyl-D-alanine carboxypeptidase LP316_12840 PF06804 NlpB/DapX lipoprotein LP316_12845 PF01842 ACT domain LP316_12850 PF00578 AhpC/TSA family LP316_12855 PF01594 AI-2E family transporter LP316_12870 PF01435 Peptidase family M48 LP316_12875 PF03960 ArsC family LP316_12890 PF07237 Protein of unknown function (DUF1428) LP316_12895 PF01022 Bacterial regulatory protein, arsR family LP316_12900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LP316_12900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LP316_12910 PF00308 Bacterial dnaA protein LP316_12920 PF00586 AIR synthase related protein, N-terminal domain LP316_12920 PF02769 AIR synthase related protein, C-terminal domain LP316_12925 PF00551 Formyl transferase LP316_12935 PF13230 Glutamine amidotransferases class-II LP316_12940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LP316_12940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LP316_12940 PF02770 Acyl-CoA dehydrogenase, middle domain LP316_12940 PF09317 Domain of unknown function (DUF1974) LP316_12945 PF01553 Acyltransferase LP316_12950 PF01548 Transposase LP316_12950 PF02371 Transposase IS116/IS110/IS902 family LP316_12980 PF00929 Exonuclease LP316_12985 PF00075 RNase H LP316_12990 PF04273 Putative phosphatase (DUF442) LP316_12990 PF00753 Metallo-beta-lactamase superfamily LP316_13015 PF07963 Prokaryotic N-terminal methylation motif LP316_13020 PF07995 Glucose / Sorbosone dehydrogenase LP316_13025 PF08447 PAS fold LP316_13025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_13025 PF13426 PAS domain LP316_13035 PF00722 Glycosyl hydrolases family 16 LP316_13040 PF06580 Histidine kinase LP316_13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_13040 PF07694 5TMR of 5TMR-LYT LP316_13045 PF04397 LytTr DNA-binding domain LP316_13045 PF00072 Response regulator receiver domain LP316_13060 PF12833 Helix-turn-helix domain LP316_13115 PF00027 Cyclic nucleotide-binding domain LP316_13115 PF00520 Ion transport protein LP316_13125 PF01103 Surface antigen LP316_13125 PF17243 POTRA domain TamA domain 1 LP316_13125 PF07244 Surface antigen variable number repeat LP316_13130 PF04357 TamB, inner membrane protein subunit of TAM complex LP316_13135 PF00563 EAL domain LP316_13135 PF03707 Bacterial signalling protein N terminal repeat LP316_13135 PF00990 Diguanylate cyclase, GGDEF domain LP316_13140 PF07963 Prokaryotic N-terminal methylation motif LP316_13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_13145 PF00672 HAMP domain LP316_13165 PF09722 Protein of unknown function (DUF2384) LP316_13175 PF03840 Preprotein translocase SecG subunit LP316_13180 PF00121 Triosephosphate isomerase LP316_13185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LP316_13185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LP316_13185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LP316_13185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LP316_13190 PF00809 Pterin binding enzyme LP316_13195 PF00004 ATPase family associated with various cellular activities (AAA) LP316_13195 PF01434 Peptidase family M41 LP316_13195 PF06480 FtsH Extracellular LP316_13195 PF17862 AAA+ lid domain LP316_13200 PF01728 FtsJ-like methyltransferase LP316_13205 PF01985 CRS1 / YhbY (CRM) domain LP316_13215 PF01272 Transcription elongation factor, GreA/GreB, C-term LP316_13215 PF03449 Transcription elongation factor, N-terminal LP316_13220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LP316_13220 PF02142 MGS-like domain LP316_13220 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LP316_13225 PF00117 Glutamine amidotransferase class-I LP316_13225 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LP316_13230 PF05173 Dihydrodipicolinate reductase, C-terminus LP316_13230 PF01113 Dihydrodipicolinate reductase, N-terminus LP316_13240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LP316_13240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_13255 PF00672 HAMP domain LP316_13255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_13255 PF18698 Histidine kinase sensor domain LP316_13255 PF00512 His Kinase A (phospho-acceptor) domain LP316_13255 PF00989 PAS fold LP316_13265 PF00486 Transcriptional regulatory protein, C terminal LP316_13265 PF00072 Response regulator receiver domain LP316_13325 PF00533 BRCA1 C Terminus (BRCT) domain LP316_13325 PF01653 NAD-dependent DNA ligase adenylation domain LP316_13325 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LP316_13325 PF03120 NAD-dependent DNA ligase OB-fold domain LP316_13325 PF12826 Helix-hairpin-helix motif LP316_13330 PF04354 ZipA, C-terminal FtsZ-binding domain LP316_13335 PF02463 RecF/RecN/SMC N terminal domain LP316_13350 PF01132 Elongation factor P (EF-P) OB domain LP316_13350 PF09285 Elongation factor P, C-terminal LP316_13350 PF08207 Elongation factor P (EF-P) KOW-like domain LP316_13355 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LP316_13370 PF00156 Phosphoribosyl transferase domain LP316_13375 PF02674 Colicin V production protein LP316_13385 PF02875 Mur ligase family, glutamate ligase domain LP316_13385 PF08245 Mur ligase middle domain LP316_13390 PF01039 Carboxyl transferase domain LP316_13390 PF17848 Acetyl-coA carboxylase zinc finger domain LP316_13395 PF01416 tRNA pseudouridine synthase LP316_13405 PF01118 Semialdehyde dehydrogenase, NAD binding domain LP316_13405 PF02774 Semialdehyde dehydrogenase, dimerisation domain LP316_13410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LP316_13410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LP316_13410 PF11890 Domain of unknown function (DUF3410) LP316_13415 PF00109 Beta-ketoacyl synthase, N-terminal domain LP316_13415 PF02801 Beta-ketoacyl synthase, C-terminal domain LP316_13420 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LP316_13420 PF01266 FAD dependent oxidoreductase LP316_13435 PF04315 Elongation factor P hydroxylase LP316_13440 PF06965 Na+/H+ antiporter 1 LP316_13445 PF01037 Lrp/AsnC ligand binding domain LP316_13450 PF00684 DnaJ central domain LP316_13450 PF01556 DnaJ C terminal domain LP316_13450 PF00226 DnaJ domain LP316_13455 PF00012 Hsp70 protein LP316_13460 PF01025 GrpE LP316_13465 PF01513 ATP-NAD kinase LP316_13470 PF02463 RecF/RecN/SMC N terminal domain LP316_13475 PF04355 SmpA / OmlA family LP316_13480 PF03658 RnfH family Ubiquitin LP316_13485 PF03364 Polyketide cyclase / dehydrase and lipid transport LP316_13490 PF01668 SmpB protein LP316_13510 PF00378 Enoyl-CoA hydratase/isomerase LP316_13540 PF00171 Aldehyde dehydrogenase family LP316_13555 PF03942 DTW domain LP316_13575 PF00563 EAL domain LP316_13575 PF08668 HDOD domain LP316_13600 PF00990 Diguanylate cyclase, GGDEF domain LP316_13600 PF00072 Response regulator receiver domain LP316_13605 PF00873 AcrB/AcrD/AcrF family LP316_13625 PF00465 Iron-containing alcohol dehydrogenase LP316_13630 PF01810 LysE type translocator LP316_13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_13635 PF03466 LysR substrate binding domain LP316_13645 PF00158 Sigma-54 interaction domain LP316_13645 PF18024 Helix-turn-helix domain LP316_13650 PF01053 Cys/Met metabolism PLP-dependent enzyme LP316_13660 PF00106 short chain dehydrogenase LP316_13670 PF03551 Transcriptional regulator PadR-like family LP316_13675 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_13675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LP316_13690 PF00801 PKD domain LP316_13690 PF05547 Immune inhibitor A peptidase M6 LP316_13700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_13700 PF03466 LysR substrate binding domain LP316_13705 PF00248 Aldo/keto reductase family LP316_13710 PF00753 Metallo-beta-lactamase superfamily LP316_13715 PF03781 Sulfatase-modifying factor enzyme 1 LP316_13725 PF05661 Protein of unknown function (DUF808) LP316_13730 PF01339 CheB methylesterase LP316_13730 PF00072 Response regulator receiver domain LP316_13750 PF17263 Family of unknown function (DUF5329) LP316_13770 PF01548 Transposase LP316_13770 PF02371 Transposase IS116/IS110/IS902 family LP316_13790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LP316_13790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LP316_13795 PF02780 Transketolase, C-terminal domain LP316_13795 PF00456 Transketolase, thiamine diphosphate binding domain LP316_13795 PF02779 Transketolase, pyrimidine binding domain LP316_13800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LP316_13800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LP316_13805 PF00162 Phosphoglycerate kinase LP316_13810 PF01116 Fructose-bisphosphate aldolase class-II LP316_13815 PF05552 Conserved TM helix LP316_13815 PF00924 Mechanosensitive ion channel LP316_13825 PF00311 Phosphoenolpyruvate carboxylase LP316_13830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_13830 PF03466 LysR substrate binding domain LP316_13835 PF00463 Isocitrate lyase family LP316_13840 PF03466 LysR substrate binding domain LP316_13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_13845 PF03788 LrgA family LP316_13850 PF04172 LrgB-like family LP316_13865 PF01274 Malate synthase LP316_13890 PF08281 Sigma-70, region 4 LP316_13890 PF04542 Sigma-70 region 2 LP316_13895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_13895 PF03466 LysR substrate binding domain LP316_13900 PF05698 Bacterial trigger factor protein (TF) C-terminus LP316_13905 PF01384 Phosphate transporter family LP316_13910 PF01865 Protein of unknown function DUF47 LP316_13915 PF01895 PhoU domain LP316_13920 PF00005 ABC transporter LP316_13925 PF00528 Binding-protein-dependent transport system inner membrane component LP316_13930 PF00528 Binding-protein-dependent transport system inner membrane component LP316_13940 PF00781 Diacylglycerol kinase catalytic domain LP316_13950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_13950 PF00672 HAMP domain LP316_13950 PF12729 Four helix bundle sensory module for signal transduction LP316_13955 PF00578 AhpC/TSA family LP316_13955 PF10417 C-terminal domain of 1-Cys peroxiredoxin LP316_13960 PF13192 Thioredoxin domain LP316_13960 PF07992 Pyridine nucleotide-disulphide oxidoreductase LP316_13965 PF13559 Domain of unknown function (DUF4129) LP316_13965 PF11992 Domain of unknown function (DUF3488) LP316_13965 PF01841 Transglutaminase-like superfamily LP316_13975 PF17863 AAA lid domain LP316_13975 PF07726 ATPase family associated with various cellular activities (AAA) LP316_13985 PF00990 Diguanylate cyclase, GGDEF domain LP316_13995 PF00111 2Fe-2S iron-sulfur cluster binding domain LP316_14000 PF00012 Hsp70 protein LP316_14005 PF07743 HSCB C-terminal oligomerisation domain LP316_14005 PF00226 DnaJ domain LP316_14010 PF01521 Iron-sulphur cluster biosynthesis LP316_14015 PF01592 NifU-like N terminal domain LP316_14020 PF00266 Aminotransferase class-V LP316_14025 PF02082 Transcriptional regulator LP316_14030 PF06426 Serine acetyltransferase, N-terminal LP316_14030 PF00132 Bacterial transferase hexapeptide (six repeats) LP316_14035 PF00588 SpoU rRNA Methylase family LP316_14040 PF00459 Inositol monophosphatase family LP316_14050 PF06629 MltA-interacting protein MipA LP316_14055 PF03631 Virulence factor BrkB LP316_14070 PF04389 Peptidase family M28 LP316_14075 PF14824 Sirohaem biosynthesis protein central LP316_14075 PF10414 Sirohaem synthase dimerisation region LP316_14075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LP316_14080 PF12821 Threonine/Serine exporter, ThrE LP316_14085 PF06738 Putative threonine/serine exporter LP316_14090 PF00271 Helicase conserved C-terminal domain LP316_14090 PF00270 DEAD/DEAH box helicase LP316_14100 PF00873 AcrB/AcrD/AcrF family LP316_14110 PF01545 Cation efflux family LP316_14110 PF16916 Dimerisation domain of Zinc Transporter LP316_14120 PF13411 MerR HTH family regulatory protein LP316_14130 PF03544 Gram-negative bacterial TonB protein C-terminal LP316_14135 PF02472 Biopolymer transport protein ExbD/TolR LP316_14140 PF01618 MotA/TolQ/ExbB proton channel family LP316_14145 PF01618 MotA/TolQ/ExbB proton channel family LP316_14170 PF02954 Bacterial regulatory protein, Fis family LP316_14170 PF00072 Response regulator receiver domain LP316_14170 PF00158 Sigma-54 interaction domain LP316_14175 PF11871 Domain of unknown function (DUF3391) LP316_14175 PF01966 HD domain LP316_14185 PF00497 Bacterial extracellular solute-binding proteins, family 3 LP316_14185 PF00512 His Kinase A (phospho-acceptor) domain LP316_14185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_14205 PF01175 Urocanase Rossmann-like domain LP316_14205 PF17392 Urocanase C-terminal domain LP316_14205 PF17391 Urocanase N-terminal domain LP316_14210 PF00221 Aromatic amino acid lyase LP316_14215 PF00392 Bacterial regulatory proteins, gntR family LP316_14215 PF07702 UTRA domain LP316_14240 PF07549 SecD/SecF GG Motif LP316_14240 PF02355 Protein export membrane protein LP316_14245 PF02355 Protein export membrane protein LP316_14245 PF13721 SecD export protein N-terminal TM region LP316_14245 PF07549 SecD/SecF GG Motif LP316_14250 PF02699 Preprotein translocase subunit LP316_14255 PF01702 Queuine tRNA-ribosyltransferase LP316_14260 PF02547 Queuosine biosynthesis protein LP316_14265 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LP316_14285 PF05230 MASE2 domain LP316_14285 PF00990 Diguanylate cyclase, GGDEF domain LP316_14315 PF13438 Domain of unknown function (DUF4113) LP316_14315 PF00817 impB/mucB/samB family LP316_14315 PF11799 impB/mucB/samB family C-terminal domain LP316_14320 PF00717 Peptidase S24-like LP316_14325 PF14579 Helix-hairpin-helix motif LP316_14325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LP316_14325 PF07733 Bacterial DNA polymerase III alpha NTPase domain LP316_14325 PF11490 DNA polymerase III polC-type N-terminus II LP316_14325 PF02811 PHP domain LP316_14325 PF00929 Exonuclease LP316_14340 PF12161 HsdM N-terminal domain LP316_14340 PF02384 N-6 DNA Methylase LP316_14350 PF12008 Type I restriction and modification enzyme - subunit R C terminal LP316_14350 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LP316_14350 PF18766 SWI2/SNF2 ATPase LP316_14435 PF13098 Thioredoxin-like domain LP316_14435 PF10411 Disulfide bond isomerase protein N-terminus LP316_14450 PF10502 Signal peptidase, peptidase S26 LP316_14460 PF06834 TraU protein LP316_14465 PF06986 Type-1V conjugative transfer system mating pair stabilisation LP316_14470 PF13361 UvrD-like helicase C-terminal domain LP316_14470 PF00580 UvrD/REP helicase N-terminal domain LP316_14480 PF00082 Subtilase family LP316_14485 PF00004 ATPase family associated with various cellular activities (AAA) LP316_14505 PF00436 Single-strand binding protein family LP316_14525 PF08406 CbbQ/NirQ/NorQ C-terminal LP316_14525 PF07728 AAA domain (dynein-related subfamily) LP316_14545 PF00092 von Willebrand factor type A domain LP316_14550 PF04002 RadC-like JAB domain LP316_14570 PF03193 RsgA GTPase LP316_14590 PF06122 Conjugative relaxosome accessory transposon protein LP316_14635 PF00717 Peptidase S24-like LP316_14635 PF01381 Helix-turn-helix LP316_14640 PF00009 Elongation factor Tu GTP binding domain LP316_14640 PF16658 Class II release factor RF3, C-terminal domain LP316_14640 PF03144 Elongation factor Tu domain 2 LP316_14645 PF05746 DALR anticodon binding domain LP316_14645 PF03485 Arginyl tRNA synthetase N terminal domain LP316_14645 PF00750 tRNA synthetases class I (R) LP316_14650 PF01026 TatD related DNase LP316_14665 PF18429 Domain of unknown function (DUF5609) LP316_14675 PF18073 Rubredoxin metal binding domain LP316_14680 PF00326 Prolyl oligopeptidase family LP316_14680 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LP316_14685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_14685 PF00672 HAMP domain LP316_14685 PF02743 Cache domain LP316_14690 PF00472 RF-1 domain LP316_14700 PF00356 Bacterial regulatory proteins, lacI family LP316_14705 PF00342 Phosphoglucose isomerase LP316_14720 PF00728 Glycosyl hydrolase family 20, catalytic domain LP316_14720 PF03173 Putative carbohydrate binding domain LP316_14720 PF02838 Glycosyl hydrolase family 20, domain 2 LP316_14725 PF01869 BadF/BadG/BcrA/BcrD ATPase family LP316_14730 PF01380 SIS domain LP316_14735 PF01979 Amidohydrolase family LP316_14755 PF00809 Pterin binding enzyme LP316_14755 PF02965 Vitamin B12 dependent methionine synthase, activation domain LP316_14755 PF02310 B12 binding domain LP316_14755 PF02607 B12 binding domain LP316_14755 PF02574 Homocysteine S-methyltransferase LP316_14760 PF04204 Homoserine O-succinyltransferase LP316_14770 PF01136 Peptidase family U32 LP316_14770 PF16325 Peptidase family U32 C-terminal domain LP316_14775 PF08448 PAS fold LP316_14775 PF00990 Diguanylate cyclase, GGDEF domain LP316_14780 PF00072 Response regulator receiver domain LP316_14780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LP316_14780 PF01627 Hpt domain LP316_14780 PF00672 HAMP domain LP316_14780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_14780 PF00512 His Kinase A (phospho-acceptor) domain LP316_14790 PF12838 4Fe-4S dicluster domain LP316_14795 PF13378 Enolase C-terminal domain-like LP316_14795 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LP316_14800 PF00596 Class II Aldolase and Adducin N-terminal domain LP316_14815 PF00440 Bacterial regulatory proteins, tetR family LP316_14820 PF01431 Peptidase family M13 LP316_14820 PF05649 Peptidase family M13 LP316_14840 PF00303 Thymidylate synthase LP316_14845 PF01790 Prolipoprotein diacylglyceryl transferase LP316_14850 PF01925 Sulfite exporter TauE/SafE LP316_14855 PF02896 PEP-utilising enzyme, TIM barrel domain LP316_14855 PF01590 GAF domain LP316_14855 PF00391 PEP-utilising enzyme, mobile domain LP316_14855 PF05524 PEP-utilising enzyme, N-terminal LP316_14860 PF00293 NUDIX domain LP316_14865 PF02976 DNA mismatch repair enzyme MutH LP316_14870 PF00990 Diguanylate cyclase, GGDEF domain LP316_14870 PF00072 Response regulator receiver domain LP316_14880 PF01263 Aldose 1-epimerase LP316_14885 PF13382 Adenine deaminase C-terminal domain LP316_14885 PF01979 Amidohydrolase family LP316_14890 PF01979 Amidohydrolase family LP316_14895 PF01794 Ferric reductase like transmembrane component LP316_14900 PF00174 Oxidoreductase molybdopterin binding domain LP316_14910 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LP316_14920 PF04304 Protein of unknown function (DUF454) LP316_14925 PF03819 MazG nucleotide pyrophosphohydrolase domain LP316_14930 PF04607 Region found in RelA / SpoT proteins LP316_14930 PF13291 ACT domain LP316_14930 PF02824 TGS domain LP316_14935 PF01938 TRAM domain LP316_14935 PF05958 tRNA (Uracil-5-)-methyltransferase LP316_14940 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LP316_14940 PF00072 Response regulator receiver domain LP316_14940 PF01627 Hpt domain LP316_14940 PF00512 His Kinase A (phospho-acceptor) domain LP316_14940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_14940 PF00672 HAMP domain LP316_14955 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LP316_14975 PF08448 PAS fold LP316_14975 PF00990 Diguanylate cyclase, GGDEF domain LP316_14980 PF01648 4'-phosphopantetheinyl transferase superfamily LP316_14985 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LP316_14990 PF02565 Recombination protein O C terminal LP316_14990 PF11967 Recombination protein O N terminal LP316_14995 PF01926 50S ribosome-binding GTPase LP316_14995 PF07650 KH domain LP316_15000 PF00035 Double-stranded RNA binding motif LP316_15000 PF14622 Ribonuclease-III-like LP316_15005 PF10502 Signal peptidase, peptidase S26 LP316_15010 PF06421 GTP-binding protein LepA C-terminus LP316_15010 PF03144 Elongation factor Tu domain 2 LP316_15010 PF00679 Elongation factor G C-terminus LP316_15010 PF00009 Elongation factor Tu GTP binding domain LP316_15020 PF03888 MucB/RseB N-terminal domain LP316_15020 PF17188 MucB/RseB C-terminal domain LP316_15030 PF04542 Sigma-70 region 2 LP316_15030 PF08281 Sigma-70, region 4 LP316_15035 PF02910 Fumarate reductase flavoprotein C-term LP316_15035 PF00890 FAD binding domain LP316_15045 PF03937 Flavinator of succinate dehydrogenase LP316_15055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LP316_15060 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LP316_15065 PF00364 Biotin-requiring enzyme LP316_15065 PF02436 Conserved carboxylase domain LP316_15065 PF00682 HMGL-like LP316_15095 PF02599 Global regulator protein family LP316_15100 PF01411 tRNA synthetases class II (A) LP316_15100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LP316_15100 PF02272 DHHA1 domain LP316_15105 PF02631 RecX family LP316_15115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_15115 PF13426 PAS domain LP316_15115 PF00072 Response regulator receiver domain LP316_15120 PF00072 Response regulator receiver domain LP316_15120 PF00486 Transcriptional regulatory protein, C terminal LP316_15125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_15125 PF08447 PAS fold LP316_15130 PF00563 EAL domain LP316_15130 PF03707 Bacterial signalling protein N terminal repeat LP316_15130 PF00990 Diguanylate cyclase, GGDEF domain LP316_15140 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LP316_15140 PF12833 Helix-turn-helix domain LP316_15145 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LP316_15155 PF03441 FAD binding domain of DNA photolyase LP316_15155 PF00875 DNA photolyase LP316_15160 PF03441 FAD binding domain of DNA photolyase LP316_15160 PF00875 DNA photolyase LP316_15175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LP316_15175 PF00512 His Kinase A (phospho-acceptor) domain LP316_15175 PF00672 HAMP domain LP316_15180 PF00072 Response regulator receiver domain LP316_15180 PF00486 Transcriptional regulatory protein, C terminal LP316_15205 PF03466 LysR substrate binding domain LP316_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_15210 PF03831 PhnA domain LP316_15210 PF08274 PhnA Zinc-Ribbon LP316_15215 PF03806 AbgT putative transporter family LP316_15220 PF07715 TonB-dependent Receptor Plug Domain LP316_15220 PF00593 TonB dependent receptor LP316_15225 PF03466 LysR substrate binding domain LP316_15225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_15250 PF03466 LysR substrate binding domain LP316_15275 PF00990 Diguanylate cyclase, GGDEF domain LP316_15285 PF03448 MgtE intracellular N domain LP316_15285 PF00571 CBS domain LP316_15285 PF01769 Divalent cation transporter LP316_15305 PF01544 CorA-like Mg2+ transporter protein LP316_15310 PF12794 Mechanosensitive ion channel inner membrane domain 1 LP316_15310 PF12795 Mechanosensitive ion channel porin domain LP316_15310 PF00924 Mechanosensitive ion channel LP316_15325 PF08443 RimK-like ATP-grasp domain LP316_15325 PF18030 RimK PreATP-grasp domain LP316_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LP316_15330 PF03466 LysR substrate binding domain LP316_15345 PF00403 Heavy-metal-associated domain LP316_15355 PF00873 AcrB/AcrD/AcrF family LP316_15360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LP316_15380 PF00593 TonB dependent receptor LP316_15380 PF07715 TonB-dependent Receptor Plug Domain LP316_15385 PF18331 PKHD-type hydroxylase C-terminal domain LP316_15385 PF13640 2OG-Fe(II) oxygenase superfamily LP316_15400 PF07152 YaeQ protein LP316_15405 PF05726 Pirin C-terminal cupin domain LP316_15405 PF02678 Pirin LP316_15420 PF12102 Domain of unknown function (DUF3578) LP316_15420 PF07728 AAA domain (dynein-related subfamily) LP316_15470 PF00665 Integrase core domain LP316_15485 PF02347 Glycine cleavage system P-protein LP316_15490 PF01597 Glycine cleavage H-protein LP316_15495 PF01571 Aminomethyltransferase folate-binding domain LP316_15495 PF08669 Glycine cleavage T-protein C-terminal barrel domain LP316_15500 PF01494 FAD binding domain LP316_15505 PF01494 FAD binding domain LP316_15510 PF00557 Metallopeptidase family M24 LP316_15510 PF05195 Aminopeptidase P, N-terminal domain LP316_15515 PF03695 Uncharacterised protein family (UPF0149) LP316_15520 PF05164 Cell division protein ZapA LP316_15535 PF01177 Asp/Glu/Hydantoin racemase LP316_15545 PF02772 S-adenosylmethionine synthetase, central domain LP316_15545 PF00438 S-adenosylmethionine synthetase, N-terminal domain LP316_15545 PF02773 S-adenosylmethionine synthetase, C-terminal domain LP316_15555 PF00873 AcrB/AcrD/AcrF family LP316_15560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LP316_15560 PF00529 HlyD membrane-fusion protein of T1SS LP316_15565 PF04452 RNA methyltransferase LP316_15570 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LP316_15570 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LP316_15575 PF02622 Uncharacterized ACR, COG1678 LP316_15580 PF03652 Holliday junction resolvase LP316_15590 PF08447 PAS fold LP316_15590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LP316_15605 PF00437 Type II/IV secretion system protein LP316_15610 PF00437 Type II/IV secretion system protein LP316_15615 PF01168 Alanine racemase, N-terminal domain LP316_15620 PF03807 NADP oxidoreductase coenzyme F420-dependent LP316_15620 PF14748 Pyrroline-5-carboxylate reductase dimerisation LP316_15625 PF02325 YGGT family LP316_15635 PF01725 Ham1 family LP316_15640 PF06969 HemN C-terminal domain LP316_15640 PF04055 Radical SAM superfamily LP316_15645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LP316_15655 PF00497 Bacterial extracellular solute-binding proteins, family 3 LP316_15655 PF01464 Transglycosylase SLT domain LP316_15660 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LP316_15660 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LP316_15660 PF02769 AIR synthase related protein, C-terminal domain LP316_15665 PF00881 Nitroreductase family LP316_15680 PF00849 RNA pseudouridylate synthase LP316_15685 PF00701 Dihydrodipicolinate synthetase family LP316_15720 PF01432 Peptidase family M3 LP316_15725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LP316_15725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LP316_15730 PF01266 FAD dependent oxidoreductase LP316_15740 PF14821 Threonine synthase N terminus LP316_15740 PF00291 Pyridoxal-phosphate dependent enzyme LP316_15745 PF00288 GHMP kinases N terminal domain LP316_15745 PF08544 GHMP kinases C terminal LP316_15750 PF03447 Homoserine dehydrogenase, NAD binding domain LP316_15750 PF00742 Homoserine dehydrogenase LP316_15750 PF01842 ACT domain LP316_15750 PF00696 Amino acid kinase family LP316_15750 PF13840 ACT domain LP316_15755 PF05230 MASE2 domain LP316_15755 PF00990 Diguanylate cyclase, GGDEF domain LP316_15765 PF00072 Response regulator receiver domain LP316_15765 PF08769 Sporulation initiation factor Spo0A C terminal LP316_15775 PF07130 YebG protein LP316_15800 PF05987 Bacterial protein of unknown function (DUF898) LP316_15815 PF01979 Amidohydrolase family LP316_15820 PF03606 C4-dicarboxylate anaerobic carrier LP316_15825 PF00593 TonB dependent receptor LP316_15825 PF07715 TonB-dependent Receptor Plug Domain LP316_15830 PF03575 Peptidase family S51 LP316_15835 PF00360 Phytochrome region LP316_15835 PF00990 Diguanylate cyclase, GGDEF domain LP316_15835 PF01590 GAF domain LP316_15835 PF00563 EAL domain LP316_15840 PF00994 Probable molybdopterin binding domain LP316_15840 PF03454 MoeA C-terminal region (domain IV) LP316_15840 PF03453 MoeA N-terminal region (domain I and II) LP316_15845 PF06463 Molybdenum Cofactor Synthesis C LP316_15845 PF04055 Radical SAM superfamily LP316_15850 PF12804 MobA-like NTP transferase domain LP316_15855 PF00994 Probable molybdopterin binding domain LP316_15860 PF01967 MoaC family LP316_15865 PF02597 ThiS family LP316_15870 PF02391 MoaE protein LP316_15880 PF00528 Binding-protein-dependent transport system inner membrane component LP316_15885 PF00005 ABC transporter LP316_15885 PF03459 TOBE domain LP316_15890 PF00899 ThiF family LP316_15895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LP316_15905 PF06418 CTP synthase N-terminus LP316_15905 PF00117 Glutamine amidotransferase class-I LP316_15910 PF03952 Enolase, N-terminal domain LP316_15910 PF00113 Enolase, C-terminal TIM barrel domain LP316_15920 PF01012 Electron transfer flavoprotein domain LP316_15925 PF00766 Electron transfer flavoprotein FAD-binding domain LP316_15925 PF01012 Electron transfer flavoprotein domain LP316_15930 PF01253 Translation initiation factor SUI1 LP316_15935 PF00072 Response regulator receiver domain