Tchl_0026	PWY-5506	methanol oxidation to formaldehyde IV
Tchl_0028	PWY-1042	glycolysis IV (plant cytosol)
Tchl_0028	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tchl_0028	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_0028	PWY-5723	Rubisco shunt
Tchl_0028	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_0028	PWY-6886	1-butanol autotrophic biosynthesis
Tchl_0028	PWY-6901	superpathway of glucose and xylose degradation
Tchl_0028	PWY-7003	glycerol degradation to butanol
Tchl_0028	PWY-7124	ethylene biosynthesis V (engineered)
Tchl_0028	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tchl_0041	PWY-5392	reductive TCA cycle II
Tchl_0041	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Tchl_0041	PWY-5690	TCA cycle II (plants and fungi)
Tchl_0041	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_0041	PWY-6728	methylaspartate cycle
Tchl_0041	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_0041	PWY-7254	TCA cycle VII (acetate-producers)
Tchl_0041	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_0097	PWY-6871	3-methylbutanol biosynthesis
Tchl_0123	PWY-7980	Tchl_0123
Tchl_0125	PWY-7980	Tchl_0125
Tchl_0129	PWY-5839	menaquinol-7 biosynthesis
Tchl_0129	PWY-5844	menaquinol-9 biosynthesis
Tchl_0129	PWY-5849	menaquinol-6 biosynthesis
Tchl_0129	PWY-5890	menaquinol-10 biosynthesis
Tchl_0129	PWY-5891	menaquinol-11 biosynthesis
Tchl_0129	PWY-5892	menaquinol-12 biosynthesis
Tchl_0129	PWY-5895	menaquinol-13 biosynthesis
Tchl_0142	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Tchl_0147	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0147	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0148	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0148	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_0148	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0148	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0150	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0150	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0153	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tchl_0153	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Tchl_0154	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tchl_0154	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Tchl_0231	PWY-5108	L-isoleucine biosynthesis V
Tchl_0231	PWY-5132	humulone biosynthesis
Tchl_0231	PWY-5133	cohumulone biosynthesis
Tchl_0231	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Tchl_0231	PWY-7118	chitin degradation to ethanol
Tchl_0231	PWY-7857	Tchl_0231
Tchl_0241	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_0258	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tchl_0378	PWY-7980	Tchl_0378
Tchl_0404	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
Tchl_0406	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Tchl_0406	PWY-7820	Tchl_0406
Tchl_0459	PWY-2201	folate transformations I
Tchl_0459	PWY-3841	folate transformations II
Tchl_0461	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Tchl_0462	PWY-5669	phosphatidylethanolamine biosynthesis I
Tchl_0470	PWY-6700	queuosine biosynthesis
Tchl_0480	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Tchl_0480	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
Tchl_0494	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tchl_0495	PWY-3341	L-proline biosynthesis III
Tchl_0495	PWY-4981	L-proline biosynthesis II (from arginine)
Tchl_0495	PWY-6344	L-ornithine degradation II (Stickland reaction)
Tchl_0498	PWY-5686	UMP biosynthesis
Tchl_0498	PWY-7790	Tchl_0498
Tchl_0498	PWY-7791	Tchl_0498
Tchl_0506	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tchl_0506	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tchl_0506	PWY-6897	thiamin salvage II
Tchl_0506	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tchl_0506	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tchl_0506	PWY-7356	thiamin salvage IV (yeast)
Tchl_0506	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tchl_0507	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tchl_0510	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0510	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_0510	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0510	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0511	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_0516	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
Tchl_0536	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tchl_0536	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tchl_0536	PWY-6897	thiamin salvage II
Tchl_0536	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tchl_0536	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tchl_0536	PWY-7356	thiamin salvage IV (yeast)
Tchl_0536	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tchl_0539	PWY-7851	Tchl_0539
Tchl_0542	PWY-3961	phosphopantothenate biosynthesis II
Tchl_0543	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tchl_0543	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Tchl_0547	PWY-381	nitrate reduction II (assimilatory)
Tchl_0547	PWY-5675	nitrate reduction V (assimilatory)
Tchl_0547	PWY-6549	L-glutamine biosynthesis III
Tchl_0547	PWY-6963	ammonia assimilation cycle I
Tchl_0547	PWY-6964	ammonia assimilation cycle II
Tchl_0550	PWY-5316	nicotine biosynthesis
Tchl_0550	PWY-7342	superpathway of nicotine biosynthesis
Tchl_0570	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
Tchl_0574	PWY-7560	methylerythritol phosphate pathway II
Tchl_0579	PWY-7851	Tchl_0579
Tchl_0629	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_0629	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_0629	PWY-7953	Tchl_0629
Tchl_0648	PWY-5392	reductive TCA cycle II
Tchl_0648	PWY-5537	pyruvate fermentation to acetate V
Tchl_0648	PWY-5538	pyruvate fermentation to acetate VI
Tchl_0648	PWY-5690	TCA cycle II (plants and fungi)
Tchl_0648	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_0648	PWY-6728	methylaspartate cycle
Tchl_0648	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_0648	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_0649	PWY-5392	reductive TCA cycle II
Tchl_0649	PWY-5537	pyruvate fermentation to acetate V
Tchl_0649	PWY-5538	pyruvate fermentation to acetate VI
Tchl_0649	PWY-5690	TCA cycle II (plants and fungi)
Tchl_0649	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_0649	PWY-6728	methylaspartate cycle
Tchl_0649	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_0649	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_0653	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tchl_0653	PWY-5723	Rubisco shunt
Tchl_0654	PWY-181	photorespiration
Tchl_0655	PWY-5958	acridone alkaloid biosynthesis
Tchl_0655	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Tchl_0655	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Tchl_0667	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_0667	PWY-4521	arsenite oxidation I (respiratory)
Tchl_0667	PWY-6692	Fe(II) oxidation
Tchl_0667	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Tchl_0689	PWY-7181	pyrimidine deoxyribonucleosides degradation
Tchl_0697	PWY-5278	sulfite oxidation III
Tchl_0697	PWY-5340	sulfate activation for sulfonation
Tchl_0697	PWY-6683	sulfate reduction III (assimilatory)
Tchl_0697	PWY-6932	selenate reduction
Tchl_0701	PWY-6683	sulfate reduction III (assimilatory)
Tchl_0708	PWY-7094	fatty acid salvage
Tchl_0708	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_0710	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_0710	PWY-5109	2-methylbutanoate biosynthesis
Tchl_0710	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tchl_0710	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tchl_0710	PWY-5177	glutaryl-CoA degradation
Tchl_0710	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_0710	PWY-6435	4-hydroxybenzoate biosynthesis V
Tchl_0710	PWY-6583	pyruvate fermentation to butanol I
Tchl_0710	PWY-6863	pyruvate fermentation to hexanol
Tchl_0710	PWY-6883	pyruvate fermentation to butanol II
Tchl_0710	PWY-6944	androstenedione degradation
Tchl_0710	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tchl_0710	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tchl_0710	PWY-7007	methyl ketone biosynthesis
Tchl_0710	PWY-7046	4-coumarate degradation (anaerobic)
Tchl_0710	PWY-7094	fatty acid salvage
Tchl_0710	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tchl_0710	PWY-735	jasmonic acid biosynthesis
Tchl_0710	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tchl_0710	PWY-7606	docosahexaenoate biosynthesis III (mammals)
Tchl_0710	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_0710	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
Tchl_0710	PWY-7726	Tchl_0710
Tchl_0710	PWY-7778	Tchl_0710
Tchl_0710	PWY-7779	Tchl_0710
Tchl_0724	PWY-5686	UMP biosynthesis
Tchl_0724	PWY-7790	Tchl_0724
Tchl_0724	PWY-7791	Tchl_0724
Tchl_0725	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Tchl_0725	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Tchl_0725	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Tchl_0725	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Tchl_0725	PWY-6978	plastoquinol-9 biosynthesis II
Tchl_0727	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0727	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0728	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0728	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0741	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tchl_0741	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tchl_0741	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tchl_0741	PWY-5994	palmitate biosynthesis I (animals and fungi)
Tchl_0741	PWY-6113	superpathway of mycolate biosynthesis
Tchl_0741	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tchl_0741	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tchl_0741	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tchl_0741	PWY-7663	gondoate biosynthesis (anaerobic)
Tchl_0741	PWY-7664	oleate biosynthesis IV (anaerobic)
Tchl_0741	PWY-7858	Tchl_0741
Tchl_0741	PWYG-321	mycolate biosynthesis
Tchl_0747	PWY-2941	L-lysine biosynthesis II
Tchl_0747	PWY-2942	L-lysine biosynthesis III
Tchl_0747	PWY-5097	L-lysine biosynthesis VI
Tchl_0750	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0750	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_0750	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0750	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0756	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_0757	PWY-6164	3-dehydroquinate biosynthesis I
Tchl_0762	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_0762	PWY-6416	quinate degradation II
Tchl_0762	PWY-6707	gallate biosynthesis
Tchl_0765	PWY-5482	pyruvate fermentation to acetate II
Tchl_0765	PWY-5485	pyruvate fermentation to acetate IV
Tchl_0765	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_0766	PWY-1281	sulfoacetaldehyde degradation I
Tchl_0766	PWY-5482	pyruvate fermentation to acetate II
Tchl_0766	PWY-5485	pyruvate fermentation to acetate IV
Tchl_0766	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_0766	PWY-6637	sulfolactate degradation II
Tchl_0768	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tchl_0768	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tchl_0768	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tchl_0768	PWY-6113	superpathway of mycolate biosynthesis
Tchl_0768	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tchl_0768	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tchl_0768	PWY-7663	gondoate biosynthesis (anaerobic)
Tchl_0768	PWY-7664	oleate biosynthesis IV (anaerobic)
Tchl_0768	PWY-7858	Tchl_0768
Tchl_0768	PWYG-321	mycolate biosynthesis
Tchl_0772	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tchl_0773	PWY-6749	CMP-legionaminate biosynthesis I
Tchl_0792	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tchl_0793	PWY-1281	sulfoacetaldehyde degradation I
Tchl_0793	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tchl_0793	PWY-5482	pyruvate fermentation to acetate II
Tchl_0793	PWY-5485	pyruvate fermentation to acetate IV
Tchl_0793	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_0793	PWY-6637	sulfolactate degradation II
Tchl_0793	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tchl_0833	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Tchl_0838	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
Tchl_0852	PWY-7883	Tchl_0852
Tchl_0857	PWY-5686	UMP biosynthesis
Tchl_0857	PWY-7790	Tchl_0857
Tchl_0857	PWY-7791	Tchl_0857
Tchl_0862	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0862	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0864	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_0864	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_0864	PWY-7953	Tchl_0864
Tchl_0865	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0865	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0865	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0866	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_0866	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_0867	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0867	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_0867	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0867	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0868	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0868	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_0868	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0868	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0869	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_0869	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_0869	PWY-7953	Tchl_0869
Tchl_0870	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_0870	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_0870	PWY-7953	Tchl_0870
Tchl_0878	PWY-5659	GDP-mannose biosynthesis
Tchl_0878	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Tchl_0887	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Tchl_0890	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Tchl_0890	PWY-5739	GDP-D-perosamine biosynthesis
Tchl_0890	PWY-5740	GDP-L-colitose biosynthesis
Tchl_0890	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Tchl_0890	PWY-7573	GDP-mycosamine biosynthesis
Tchl_0898	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_0898	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_0898	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_0898	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_0901	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tchl_0918	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_0922	PWY-6123	inosine-5'-phosphate biosynthesis I
Tchl_0922	PWY-6124	inosine-5'-phosphate biosynthesis II
Tchl_0922	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_0922	PWY-7234	inosine-5'-phosphate biosynthesis III
Tchl_0927	PWY-6700	queuosine biosynthesis
Tchl_0928	PWY-6700	queuosine biosynthesis
Tchl_0942	PWY-4381	fatty acid biosynthesis initiation I
Tchl_0942	PWY-5743	3-hydroxypropanoate cycle
Tchl_0942	PWY-5744	glyoxylate assimilation
Tchl_0942	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_0942	PWY-6722	candicidin biosynthesis
Tchl_0949	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tchl_0949	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Tchl_0949	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tchl_0949	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_0949	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Tchl_0949	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tchl_0949	PWY-7205	CMP phosphorylation
Tchl_0949	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tchl_0949	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_0949	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_0949	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_0949	PWY-7224	purine deoxyribonucleosides salvage
Tchl_0949	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tchl_0949	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Tchl_0964	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_0970	PWY-6683	sulfate reduction III (assimilatory)
Tchl_0992	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_0992	PWY-6692	Fe(II) oxidation
Tchl_0992	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Tchl_0992	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Tchl_0999	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_1002	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_1021	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tchl_1036	PWY-5386	methylglyoxal degradation I
Tchl_1038	PWY-723	alkylnitronates degradation
Tchl_1042	PWY-2781	<i>cis</i>-zeatin biosynthesis
Tchl_1045	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tchl_1045	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Tchl_1052	PWY-2941	L-lysine biosynthesis II
Tchl_1052	PWY-2942	L-lysine biosynthesis III
Tchl_1052	PWY-5097	L-lysine biosynthesis VI
Tchl_1052	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
Tchl_1052	PWY-6559	spermidine biosynthesis II
Tchl_1052	PWY-6562	norspermidine biosynthesis
Tchl_1052	PWY-7153	grixazone biosynthesis
Tchl_1052	PWY-7977	Tchl_1052
Tchl_1100	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_1102	PWY-101	photosynthesis light reactions
Tchl_1102	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_1118	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Tchl_1118	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tchl_1137	PWY-5344	L-homocysteine biosynthesis
Tchl_1140	PWY-6891	thiazole biosynthesis II (Bacillus)
Tchl_1140	PWY-6892	thiazole biosynthesis I (E. coli)
Tchl_1173	PWY-723	alkylnitronates degradation
Tchl_1194	PWY-6167	flavin biosynthesis II (archaea)
Tchl_1194	PWY-6168	flavin biosynthesis III (fungi)
Tchl_1195	PWY-6167	flavin biosynthesis II (archaea)
Tchl_1195	PWY-6168	flavin biosynthesis III (fungi)
Tchl_1195	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tchl_1195	PWY-7991	Tchl_1195
Tchl_1196	PWY-6167	flavin biosynthesis II (archaea)
Tchl_1196	PWY-6168	flavin biosynthesis III (fungi)
Tchl_1196	PWY-7980	Tchl_1196
Tchl_1200	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Tchl_1202	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_1202	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_1202	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_1237	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tchl_1237	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tchl_1237	PWY-7961	Tchl_1237
Tchl_1237	PWY-7963	Tchl_1237
Tchl_1237	PWY-7964	Tchl_1237
Tchl_1237	PWY-7965	Tchl_1237
Tchl_1237	PWY-7966	Tchl_1237
Tchl_1237	PWY-7967	Tchl_1237
Tchl_1237	PWY-7968	Tchl_1237
Tchl_1237	PWY-7969	Tchl_1237
Tchl_1237	PWY-7970	Tchl_1237
Tchl_1237	PWY-7975	Tchl_1237
Tchl_1239	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tchl_1239	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tchl_1239	PWY-7964	Tchl_1239
Tchl_1239	PWY-7965	Tchl_1239
Tchl_1239	PWY-7966	Tchl_1239
Tchl_1239	PWY-7967	Tchl_1239
Tchl_1239	PWY-7968	Tchl_1239
Tchl_1239	PWY-7969	Tchl_1239
Tchl_1239	PWY-7970	Tchl_1239
Tchl_1241	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tchl_1241	PWY-7962	Tchl_1241
Tchl_1241	PWY-7971	Tchl_1241
Tchl_1241	PWY-7972	Tchl_1241
Tchl_1246	PWY-5194	siroheme biosynthesis
Tchl_1246	PWY-5196	factor 430 biosynthesis
Tchl_1246	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_1249	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_1252	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_1254	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_1255	PWY-5194	siroheme biosynthesis
Tchl_1255	PWY-5196	factor 430 biosynthesis
Tchl_1255	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_1258	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Tchl_1258	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Tchl_1261	PWY-2941	L-lysine biosynthesis II
Tchl_1261	PWY-5097	L-lysine biosynthesis VI
Tchl_1272	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_1272	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Tchl_1272	PWY-7761	Tchl_1272
Tchl_1275	PWY-702	L-methionine biosynthesis II
Tchl_1313	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_1313	PWY-4521	arsenite oxidation I (respiratory)
Tchl_1313	PWY-6692	Fe(II) oxidation
Tchl_1313	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Tchl_1344	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Tchl_1344	PWY-6853	ethylene biosynthesis II (microbes)
Tchl_1344	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Tchl_1365	PWY-2201	folate transformations I
Tchl_1365	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_1365	PWY-7909	Tchl_1365
Tchl_1383	PWY-2201	folate transformations I
Tchl_1383	PWY-3841	folate transformations II
Tchl_1383	PWY-7977	Tchl_1383
Tchl_1406	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
Tchl_1435	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tchl_1435	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tchl_1435	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tchl_1435	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tchl_1441	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_1441	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_1441	PWY-7953	Tchl_1441
Tchl_1444	PWY-5392	reductive TCA cycle II
Tchl_1444	PWY-5537	pyruvate fermentation to acetate V
Tchl_1444	PWY-5538	pyruvate fermentation to acetate VI
Tchl_1444	PWY-5690	TCA cycle II (plants and fungi)
Tchl_1444	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_1444	PWY-6728	methylaspartate cycle
Tchl_1444	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_1444	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_1460	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Tchl_1460	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tchl_1503	PWY-5108	L-isoleucine biosynthesis V
Tchl_1503	PWY-5132	humulone biosynthesis
Tchl_1503	PWY-5133	cohumulone biosynthesis
Tchl_1503	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Tchl_1503	PWY-7118	chitin degradation to ethanol
Tchl_1503	PWY-7857	Tchl_1503
Tchl_1510	PWY-5686	UMP biosynthesis
Tchl_1510	PWY-7790	Tchl_1510
Tchl_1510	PWY-7791	Tchl_1510
Tchl_1536	PWY-5269	cardiolipin biosynthesis II
Tchl_1536	PWY-5668	cardiolipin biosynthesis I
Tchl_1536	PWY-7817	Tchl_1536
Tchl_1537	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tchl_1537	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tchl_1537	PWY-6896	thiamin salvage I
Tchl_1537	PWY-6897	thiamin salvage II
Tchl_1557	PWY-4381	fatty acid biosynthesis initiation I
Tchl_1557	PWY-5743	3-hydroxypropanoate cycle
Tchl_1557	PWY-5744	glyoxylate assimilation
Tchl_1557	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_1557	PWY-6722	candicidin biosynthesis
Tchl_1586	PWY-5108	L-isoleucine biosynthesis V
Tchl_1586	PWY-5132	humulone biosynthesis
Tchl_1586	PWY-5133	cohumulone biosynthesis
Tchl_1586	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Tchl_1586	PWY-7118	chitin degradation to ethanol
Tchl_1586	PWY-7857	Tchl_1586
Tchl_1608	PWY-6703	preQ<sub>0</sub> biosynthesis
Tchl_1609	PWY-6703	preQ<sub>0</sub> biosynthesis
Tchl_1663	PWY-5101	L-isoleucine biosynthesis II
Tchl_1663	PWY-5103	L-isoleucine biosynthesis III
Tchl_1663	PWY-5104	L-isoleucine biosynthesis IV
Tchl_1663	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tchl_1702	PWY-4381	fatty acid biosynthesis initiation I
Tchl_1702	PWY-5743	3-hydroxypropanoate cycle
Tchl_1702	PWY-5744	glyoxylate assimilation
Tchl_1702	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_1702	PWY-6722	candicidin biosynthesis
Tchl_1707	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Tchl_1707	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tchl_1784	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_1809	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Tchl_1809	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Tchl_1819	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_1819	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_1827	PWY-4983	L-citrulline-nitric oxide cycle
Tchl_1827	PWY-4984	urea cycle
Tchl_1827	PWY-5	canavanine biosynthesis
Tchl_1827	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_1827	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_1828	PWY-1622	formaldehyde assimilation I (serine pathway)
Tchl_1828	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tchl_1828	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_1828	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_1828	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Tchl_1828	PWY-6549	L-glutamine biosynthesis III
Tchl_1828	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tchl_1828	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tchl_1828	PWY-7124	ethylene biosynthesis V (engineered)
Tchl_1829	PWY-1622	formaldehyde assimilation I (serine pathway)
Tchl_1829	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tchl_1829	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_1829	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_1829	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Tchl_1829	PWY-6549	L-glutamine biosynthesis III
Tchl_1829	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tchl_1829	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tchl_1829	PWY-7124	ethylene biosynthesis V (engineered)
Tchl_1830	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tchl_1830	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tchl_1831	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tchl_1831	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tchl_1833	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Tchl_1835	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tchl_1835	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tchl_1835	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tchl_1836	PWY-6123	inosine-5'-phosphate biosynthesis I
Tchl_1836	PWY-6124	inosine-5'-phosphate biosynthesis II
Tchl_1836	PWY-7234	inosine-5'-phosphate biosynthesis III
Tchl_1845	PWY-3841	folate transformations II
Tchl_1845	PWY-6614	tetrahydrofolate biosynthesis
Tchl_1846	PWY-3841	folate transformations II
Tchl_1846	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tchl_1846	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_1846	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tchl_1846	PWY-7199	pyrimidine deoxyribonucleosides salvage
Tchl_1846	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tchl_1860	PWY-5108	L-isoleucine biosynthesis V
Tchl_1860	PWY-5132	humulone biosynthesis
Tchl_1860	PWY-5133	cohumulone biosynthesis
Tchl_1860	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Tchl_1860	PWY-7118	chitin degradation to ethanol
Tchl_1860	PWY-7857	Tchl_1860
Tchl_1861	PWY-3341	L-proline biosynthesis III
Tchl_1861	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Tchl_1889	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_1889	PWY-5109	2-methylbutanoate biosynthesis
Tchl_1889	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tchl_1889	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tchl_1889	PWY-5177	glutaryl-CoA degradation
Tchl_1889	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_1889	PWY-6435	4-hydroxybenzoate biosynthesis V
Tchl_1889	PWY-6583	pyruvate fermentation to butanol I
Tchl_1889	PWY-6863	pyruvate fermentation to hexanol
Tchl_1889	PWY-6883	pyruvate fermentation to butanol II
Tchl_1889	PWY-6944	androstenedione degradation
Tchl_1889	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tchl_1889	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tchl_1889	PWY-7007	methyl ketone biosynthesis
Tchl_1889	PWY-7046	4-coumarate degradation (anaerobic)
Tchl_1889	PWY-7094	fatty acid salvage
Tchl_1889	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tchl_1889	PWY-735	jasmonic acid biosynthesis
Tchl_1889	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tchl_1889	PWY-7606	docosahexaenoate biosynthesis III (mammals)
Tchl_1889	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_1889	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
Tchl_1889	PWY-7726	Tchl_1889
Tchl_1889	PWY-7778	Tchl_1889
Tchl_1889	PWY-7779	Tchl_1889
Tchl_1940	PWY-6823	molybdenum cofactor biosynthesis
Tchl_1950	PWY-6829	tRNA methylation (yeast)
Tchl_1950	PWY-7285	methylwyosine biosynthesis
Tchl_1950	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Tchl_1955	PWY-6871	3-methylbutanol biosynthesis
Tchl_1957	PWY-5103	L-isoleucine biosynthesis III
Tchl_1957	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tchl_1958	PWY-5101	L-isoleucine biosynthesis II
Tchl_1958	PWY-5103	L-isoleucine biosynthesis III
Tchl_1958	PWY-5104	L-isoleucine biosynthesis IV
Tchl_1958	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Tchl_1958	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Tchl_1958	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Tchl_1958	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tchl_1967	PWY-6654	phosphopantothenate biosynthesis III
Tchl_1969	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tchl_1969	PWY-6148	tetrahydromethanopterin biosynthesis
Tchl_1969	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Tchl_1969	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tchl_1969	PWY-7852	Tchl_1969
Tchl_1969	PWY-7853	Tchl_1969
Tchl_1974	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tchl_1974	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tchl_1974	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tchl_1983	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Tchl_1983	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Tchl_2006	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tchl_2006	PWY-6148	tetrahydromethanopterin biosynthesis
Tchl_2006	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Tchl_2006	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tchl_2011	PWY-3341	L-proline biosynthesis III
Tchl_2011	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Tchl_2018	PWY-1281	sulfoacetaldehyde degradation I
Tchl_2018	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tchl_2018	PWY-5482	pyruvate fermentation to acetate II
Tchl_2018	PWY-5485	pyruvate fermentation to acetate IV
Tchl_2018	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_2018	PWY-6637	sulfolactate degradation II
Tchl_2018	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tchl_2027	PWY-7799	Tchl_2027
Tchl_2027	PWY-7800	Tchl_2027
Tchl_2037	PWY-6123	inosine-5'-phosphate biosynthesis I
Tchl_2037	PWY-6124	inosine-5'-phosphate biosynthesis II
Tchl_2037	PWY-7234	inosine-5'-phosphate biosynthesis III
Tchl_2049	PWY-3461	L-tyrosine biosynthesis II
Tchl_2049	PWY-3462	L-phenylalanine biosynthesis II
Tchl_2049	PWY-6120	L-tyrosine biosynthesis III
Tchl_2049	PWY-6627	salinosporamide A biosynthesis
Tchl_2049	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Tchl_2049	PWY-7626	bacilysin biosynthesis
Tchl_2051	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Tchl_2052	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_2052	PWY-7205	CMP phosphorylation
Tchl_2073	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_2073	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tchl_2073	PWY-6596	adenosine nucleotides degradation I
Tchl_2073	PWY-6606	guanosine nucleotides degradation II
Tchl_2073	PWY-6607	guanosine nucleotides degradation I
Tchl_2073	PWY-6608	guanosine nucleotides degradation III
Tchl_2073	PWY-7185	UTP and CTP dephosphorylation I
Tchl_2073	PWY-7821	Tchl_2073
Tchl_2081	PWY-2941	L-lysine biosynthesis II
Tchl_2081	PWY-2942	L-lysine biosynthesis III
Tchl_2081	PWY-5097	L-lysine biosynthesis VI
Tchl_2100	PWY-1341	phenylacetate degradation II (anaerobic)
Tchl_2100	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Tchl_2100	PWY-7716	Tchl_2100
Tchl_2124	PWY-6823	molybdenum cofactor biosynthesis
Tchl_2130	PWY-5392	reductive TCA cycle II
Tchl_2130	PWY-5537	pyruvate fermentation to acetate V
Tchl_2130	PWY-5538	pyruvate fermentation to acetate VI
Tchl_2130	PWY-5690	TCA cycle II (plants and fungi)
Tchl_2130	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_2130	PWY-6728	methylaspartate cycle
Tchl_2130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_2130	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_2131	PWY-1341	phenylacetate degradation II (anaerobic)
Tchl_2131	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Tchl_2131	PWY-7716	Tchl_2131
Tchl_2166	PWY-5022	4-aminobutanoate degradation V
Tchl_2166	PWY-6728	methylaspartate cycle
Tchl_2166	PWY-7126	ethylene biosynthesis IV
Tchl_2167	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Tchl_2167	PWY-7177	UTP and CTP dephosphorylation II
Tchl_2167	PWY-7185	UTP and CTP dephosphorylation I
Tchl_2168	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tchl_2168	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
Tchl_2169	PWY-1042	glycolysis IV (plant cytosol)
Tchl_2169	PWY-1622	formaldehyde assimilation I (serine pathway)
Tchl_2169	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tchl_2169	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_2169	PWY-5723	Rubisco shunt
Tchl_2169	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_2169	PWY-6886	1-butanol autotrophic biosynthesis
Tchl_2169	PWY-6901	superpathway of glucose and xylose degradation
Tchl_2169	PWY-7003	glycerol degradation to butanol
Tchl_2169	PWY-7124	ethylene biosynthesis V (engineered)
Tchl_2169	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tchl_2177	PWY-5663	tetrahydrobiopterin biosynthesis I
Tchl_2177	PWY-5664	tetrahydrobiopterin biosynthesis II
Tchl_2177	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tchl_2177	PWY-6703	preQ<sub>0</sub> biosynthesis
Tchl_2177	PWY-6983	tetrahydrobiopterin biosynthesis III
Tchl_2177	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Tchl_2177	PWY-7852	Tchl_2177
Tchl_2212	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tchl_2229	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tchl_2230	PWY-7892	Tchl_2230
Tchl_2242	PWY-5028	L-histidine degradation II
Tchl_2242	PWY-5030	L-histidine degradation III
Tchl_2247	PWY-5028	L-histidine degradation II
Tchl_2247	PWY-5030	L-histidine degradation III
Tchl_2250	PWY-5028	L-histidine degradation II
Tchl_2250	PWY-5030	L-histidine degradation III
Tchl_2256	PWY-4041	&gamma;-glutamyl cycle
Tchl_2256	PWY-7942	Tchl_2256
Tchl_2267	PWY-7805	Tchl_2267
Tchl_2267	PWY-7807	Tchl_2267
Tchl_2268	PWY-1042	glycolysis IV (plant cytosol)
Tchl_2268	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tchl_2268	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_2268	PWY-5723	Rubisco shunt
Tchl_2268	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_2268	PWY-6886	1-butanol autotrophic biosynthesis
Tchl_2268	PWY-6901	superpathway of glucose and xylose degradation
Tchl_2268	PWY-7003	glycerol degradation to butanol
Tchl_2268	PWY-7124	ethylene biosynthesis V (engineered)
Tchl_2268	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tchl_2289	PWY-5279	sulfite oxidation II
Tchl_2295	PWY-5747	2-methylcitrate cycle II
Tchl_2315	PWY-1622	formaldehyde assimilation I (serine pathway)
Tchl_2315	PWY-5392	reductive TCA cycle II
Tchl_2315	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Tchl_2315	PWY-5690	TCA cycle II (plants and fungi)
Tchl_2315	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_2315	PWY-6728	methylaspartate cycle
Tchl_2315	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_2315	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tchl_2315	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tchl_2320	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_2320	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Tchl_2320	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Tchl_2320	PWY-5690	TCA cycle II (plants and fungi)
Tchl_2320	PWY-6728	methylaspartate cycle
Tchl_2320	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_2320	PWY-7254	TCA cycle VII (acetate-producers)
Tchl_2320	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Tchl_2323	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Tchl_2329	PWY-6823	molybdenum cofactor biosynthesis
Tchl_2331	PWY-6823	molybdenum cofactor biosynthesis
Tchl_2331	PWY-7887	Tchl_2331
Tchl_2344	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tchl_2344	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tchl_2344	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_2344	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Tchl_2344	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tchl_2344	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tchl_2349	PWY-6823	molybdenum cofactor biosynthesis
Tchl_2361	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Tchl_2362	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Tchl_2368	PWY-6168	flavin biosynthesis III (fungi)
Tchl_2368	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tchl_2368	PWY-7991	Tchl_2368
Tchl_2369	PWY-6823	molybdenum cofactor biosynthesis
Tchl_2377	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_2377	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Tchl_2377	PWY-6638	sulfolactate degradation III
Tchl_2377	PWY-6642	(<i>R</i>)-cysteate degradation
Tchl_2377	PWY-6643	coenzyme M biosynthesis II
Tchl_2377	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tchl_2377	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tchl_2377	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tchl_2388	PWY-4381	fatty acid biosynthesis initiation I
Tchl_2389	PWY-4381	fatty acid biosynthesis initiation I
Tchl_2389	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Tchl_2389	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tchl_2408	PWY-6012	acyl carrier protein metabolism I
Tchl_2408	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Tchl_2408	PWY-6289	petrobactin biosynthesis
Tchl_2409	PWY-6902	chitin degradation II
Tchl_2409	PWY-7822	Tchl_2409
Tchl_2409	PWY-7883	Tchl_2409
Tchl_2419	PWY-3801	sucrose degradation II (sucrose synthase)
Tchl_2419	PWY-5054	sorbitol biosynthesis I
Tchl_2419	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Tchl_2419	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tchl_2419	PWY-5659	GDP-mannose biosynthesis
Tchl_2419	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_2419	PWY-621	sucrose degradation III (sucrose invertase)
Tchl_2419	PWY-622	starch biosynthesis
Tchl_2419	PWY-6981	chitin biosynthesis
Tchl_2419	PWY-6992	1,5-anhydrofructose degradation
Tchl_2419	PWY-7238	sucrose biosynthesis II
Tchl_2419	PWY-7347	sucrose biosynthesis III
Tchl_2419	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tchl_2420	PWY-5269	cardiolipin biosynthesis II
Tchl_2420	PWY-5668	cardiolipin biosynthesis I
Tchl_2420	PWY-7817	Tchl_2420
Tchl_2464	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_2464	PWY-7761	Tchl_2464
Tchl_2478	PWY-5663	tetrahydrobiopterin biosynthesis I
Tchl_2478	PWY-5664	tetrahydrobiopterin biosynthesis II
Tchl_2478	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tchl_2478	PWY-6703	preQ<sub>0</sub> biosynthesis
Tchl_2478	PWY-6983	tetrahydrobiopterin biosynthesis III
Tchl_2478	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Tchl_2478	PWY-7852	Tchl_2478
Tchl_2479	PWY-6891	thiazole biosynthesis II (Bacillus)
Tchl_2479	PWY-6892	thiazole biosynthesis I (E. coli)
Tchl_2479	PWY-7560	methylerythritol phosphate pathway II
Tchl_2484	PWY-7560	methylerythritol phosphate pathway II
Tchl_2486	PWY-7884	Tchl_2486
Tchl_2488	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Tchl_2488	PWY-6167	flavin biosynthesis II (archaea)
Tchl_2488	PWY-6168	flavin biosynthesis III (fungi)
Tchl_2488	PWY-7863	Tchl_2488
Tchl_2491	PWY-6700	queuosine biosynthesis
Tchl_2504	PWY-7039	phosphatidate metabolism, as a signaling molecule
Tchl_2504	PWY-7817	Tchl_2504
Tchl_2520	PWY-4981	L-proline biosynthesis II (from arginine)
Tchl_2520	PWY-4984	urea cycle
Tchl_2520	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_2521	PWY-4983	L-citrulline-nitric oxide cycle
Tchl_2521	PWY-4984	urea cycle
Tchl_2521	PWY-5	canavanine biosynthesis
Tchl_2521	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_2521	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_2523	PWY-5532	adenosine nucleotides degradation IV
Tchl_2523	PWY-7181	pyrimidine deoxyribonucleosides degradation
Tchl_2538	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_2538	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_2540	PWY-5392	reductive TCA cycle II
Tchl_2540	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Tchl_2540	PWY-5690	TCA cycle II (plants and fungi)
Tchl_2540	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_2540	PWY-6728	methylaspartate cycle
Tchl_2540	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_2540	PWY-7254	TCA cycle VII (acetate-producers)
Tchl_2540	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_2541	PWY-5108	L-isoleucine biosynthesis V
Tchl_2541	PWY-5132	humulone biosynthesis
Tchl_2541	PWY-5133	cohumulone biosynthesis
Tchl_2541	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Tchl_2541	PWY-7118	chitin degradation to ethanol
Tchl_2541	PWY-7857	Tchl_2541
Tchl_2550	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tchl_2550	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tchl_2550	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tchl_2550	PWY-6113	superpathway of mycolate biosynthesis
Tchl_2550	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tchl_2550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tchl_2550	PWY-7663	gondoate biosynthesis (anaerobic)
Tchl_2550	PWY-7664	oleate biosynthesis IV (anaerobic)
Tchl_2550	PWY-7858	Tchl_2550
Tchl_2550	PWYG-321	mycolate biosynthesis
Tchl_2559	PWY-6748	nitrate reduction VII (denitrification)
Tchl_2560	PWY-6748	nitrate reduction VII (denitrification)
Tchl_2570	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tchl_2570	PWY-6596	adenosine nucleotides degradation I
Tchl_2570	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_2571	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_2590	PWY-5194	siroheme biosynthesis
Tchl_2590	PWY-5196	factor 430 biosynthesis
Tchl_2590	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tchl_2611	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_2611	PWY-4521	arsenite oxidation I (respiratory)
Tchl_2611	PWY-6692	Fe(II) oxidation
Tchl_2611	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Tchl_2614	PWY-5686	UMP biosynthesis
Tchl_2615	PWY-7802	Tchl_2615
Tchl_2616	PWY-7801	Tchl_2616
Tchl_2640	PWY-5392	reductive TCA cycle II
Tchl_2640	PWY-5537	pyruvate fermentation to acetate V
Tchl_2640	PWY-5538	pyruvate fermentation to acetate VI
Tchl_2640	PWY-5690	TCA cycle II (plants and fungi)
Tchl_2640	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_2640	PWY-6728	methylaspartate cycle
Tchl_2640	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_2640	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_2642	PWY-5350	thiosulfate disproportionation III (rhodanese)
Tchl_2642	PWY-7927	Tchl_2642
Tchl_2643	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Tchl_2647	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tchl_2647	PWY-6164	3-dehydroquinate biosynthesis I
Tchl_2647	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
Tchl_2656	PWY-7560	methylerythritol phosphate pathway II
Tchl_2657	PWY-7560	methylerythritol phosphate pathway II
Tchl_2687	PWY-5958	acridone alkaloid biosynthesis
Tchl_2687	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Tchl_2687	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Tchl_2691	PWY-5382	hydrogen oxidation II (aerobic, NAD)
Tchl_2691	PWY-6758	hydrogen production II
Tchl_2703	PWY-2201	folate transformations I
Tchl_2703	PWY-3841	folate transformations II
Tchl_2705	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Tchl_2705	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Tchl_2705	PWY-7766	Tchl_2705
Tchl_2706	PWY-2201	folate transformations I
Tchl_2706	PWY-3841	folate transformations II
Tchl_2706	PWY-7977	Tchl_2706
Tchl_2753	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tchl_2753	PWY-6578	8-amino-7-oxononanoate biosynthesis III
Tchl_2753	PWY-7147	8-amino-7-oxononanoate biosynthesis II
Tchl_2756	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Tchl_2761	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tchl_2761	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tchl_2761	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tchl_2761	PWY-5994	palmitate biosynthesis I (animals and fungi)
Tchl_2761	PWY-6113	superpathway of mycolate biosynthesis
Tchl_2761	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tchl_2761	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tchl_2761	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tchl_2761	PWY-7663	gondoate biosynthesis (anaerobic)
Tchl_2761	PWY-7664	oleate biosynthesis IV (anaerobic)
Tchl_2761	PWY-7858	Tchl_2761
Tchl_2761	PWYG-321	mycolate biosynthesis
Tchl_2766	PWY-7560	methylerythritol phosphate pathway II
Tchl_2767	PWY-5667	CDP-diacylglycerol biosynthesis I
Tchl_2767	PWY-5981	CDP-diacylglycerol biosynthesis III
Tchl_2767	PWY-7817	Tchl_2767
Tchl_2773	PWY-7799	Tchl_2773
Tchl_2773	PWY-7800	Tchl_2773
Tchl_2793	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tchl_2794	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tchl_2798	PWY-2301	<i>myo</i>-inositol biosynthesis
Tchl_2798	PWY-4702	phytate degradation I
Tchl_2798	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Tchl_2858	PWY-5386	methylglyoxal degradation I
Tchl_2889	PWY-6803	phosphatidylcholine acyl editing
Tchl_2889	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Tchl_2889	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Tchl_2889	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Tchl_2889	PWY-7783	Tchl_2889
Tchl_2904	PWY-6938	NADH repair
Tchl_2906	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_2907	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Tchl_2916	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_2916	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Tchl_2916	PWY-7761	Tchl_2916
Tchl_2919	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_2919	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Tchl_2919	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Tchl_2919	PWY-6692	Fe(II) oxidation
Tchl_2934	PWY-1042	glycolysis IV (plant cytosol)
Tchl_2934	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_2934	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_2934	PWY-7003	glycerol degradation to butanol
Tchl_2938	PWY-4621	arsenate detoxification II (glutaredoxin)
Tchl_2946	PWY-6749	CMP-legionaminate biosynthesis I
Tchl_2952	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_2952	PWY-5686	UMP biosynthesis
Tchl_2952	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_2952	PWY-7790	Tchl_2952
Tchl_2952	PWY-7791	Tchl_2952
Tchl_2953	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_2953	PWY-5686	UMP biosynthesis
Tchl_2953	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_2953	PWY-7790	Tchl_2953
Tchl_2953	PWY-7791	Tchl_2953
Tchl_2955	PWY-2941	L-lysine biosynthesis II
Tchl_2955	PWY-2942	L-lysine biosynthesis III
Tchl_2955	PWY-5097	L-lysine biosynthesis VI
Tchl_2959	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Tchl_2959	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tchl_2959	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Tchl_2965	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Tchl_2965	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Tchl_2965	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Tchl_2965	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Tchl_2965	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Tchl_2965	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Tchl_2965	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Tchl_2965	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Tchl_2965	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Tchl_2965	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Tchl_2976	PWY-5392	reductive TCA cycle II
Tchl_2976	PWY-5537	pyruvate fermentation to acetate V
Tchl_2976	PWY-5538	pyruvate fermentation to acetate VI
Tchl_2976	PWY-5690	TCA cycle II (plants and fungi)
Tchl_2976	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_2976	PWY-6728	methylaspartate cycle
Tchl_2976	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_2976	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tchl_3062	PWY-7884	Tchl_3062
Tchl_3070	PWY-6168	flavin biosynthesis III (fungi)
Tchl_3070	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tchl_3070	PWY-7991	Tchl_3070
Tchl_3071	PWY-5381	pyridine nucleotide cycling (plants)
Tchl_3080	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Tchl_3080	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Tchl_3080	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Tchl_3080	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Tchl_3080	PWY-6978	plastoquinol-9 biosynthesis II
Tchl_3083	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Tchl_3083	PWY-6174	mevalonate pathway II (archaea)
Tchl_3083	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Tchl_3083	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Tchl_3083	PWY-7102	bisabolene biosynthesis
Tchl_3083	PWY-7391	isoprene biosynthesis II (engineered)
Tchl_3083	PWY-7524	mevalonate pathway III (archaea)
Tchl_3083	PWY-7560	methylerythritol phosphate pathway II
Tchl_3083	PWY-922	mevalonate pathway I
Tchl_3085	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_3088	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Tchl_3088	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Tchl_3088	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Tchl_3088	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Tchl_3088	PWY-6978	plastoquinol-9 biosynthesis II
Tchl_3122	PWY-6123	inosine-5'-phosphate biosynthesis I
Tchl_3122	PWY-7234	inosine-5'-phosphate biosynthesis III
Tchl_3123	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Tchl_3123	PWY-2201	folate transformations I
Tchl_3123	PWY-3841	folate transformations II
Tchl_3123	PWY-5030	L-histidine degradation III
Tchl_3123	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_3123	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Tchl_3123	PWY-7909	Tchl_3123
Tchl_3128	PWY-6891	thiazole biosynthesis II (Bacillus)
Tchl_3128	PWY-6892	thiazole biosynthesis I (E. coli)
Tchl_3128	PWY-7560	methylerythritol phosphate pathway II
Tchl_3134	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tchl_3134	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tchl_3134	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tchl_3149	PWY-1042	glycolysis IV (plant cytosol)
Tchl_3149	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tchl_3149	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_3149	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tchl_3150	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tchl_3151	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tchl_3157	PWY-6854	ethylene biosynthesis III (microbes)
Tchl_3159	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tchl_3159	PWY-5723	Rubisco shunt
Tchl_3169	PWY-6832	2-aminoethylphosphonate degradation II
Tchl_3197	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tchl_3197	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tchl_3197	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tchl_3197	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tchl_3197	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_3197	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tchl_3197	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tchl_3197	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Tchl_3207	PWY-7805	Tchl_3207
Tchl_3207	PWY-7807	Tchl_3207
Tchl_3212	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Tchl_3224	PWY-3781	aerobic respiration I (cytochrome c)
Tchl_3224	PWY-4521	arsenite oxidation I (respiratory)
Tchl_3224	PWY-6692	Fe(II) oxidation
Tchl_3224	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Tchl_3238	PWY-5913	TCA cycle VI (obligate autotrophs)
Tchl_3238	PWY-6549	L-glutamine biosynthesis III
Tchl_3238	PWY-6728	methylaspartate cycle
Tchl_3238	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_3238	PWY-7124	ethylene biosynthesis V (engineered)
Tchl_3238	PWY-7254	TCA cycle VII (acetate-producers)
Tchl_3238	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tchl_3250	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_3257	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tchl_3257	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tchl_3261	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_3261	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_3284	PWY-7887	Tchl_3284
Tchl_3284	PWY-7892	Tchl_3284
Tchl_3291	PWY-6749	CMP-legionaminate biosynthesis I
Tchl_3297	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tchl_3297	PWY-6164	3-dehydroquinate biosynthesis I
Tchl_3297	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
Tchl_3309	PWY-1622	formaldehyde assimilation I (serine pathway)
Tchl_3309	PWY-181	photorespiration
Tchl_3309	PWY-2161	folate polyglutamylation
Tchl_3309	PWY-2201	folate transformations I
Tchl_3309	PWY-3661	glycine betaine degradation I
Tchl_3309	PWY-3661-1	glycine betaine degradation II (mammalian)
Tchl_3309	PWY-3841	folate transformations II
Tchl_3309	PWY-5497	purine nucleobases degradation II (anaerobic)
Tchl_3311	PWY-7991	Tchl_3311
Tchl_3321	PWY-5667	CDP-diacylglycerol biosynthesis I
Tchl_3321	PWY-5981	CDP-diacylglycerol biosynthesis III
Tchl_3321	PWY-7902	Tchl_3321
Tchl_3324	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Tchl_3325	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tchl_3327	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tchl_3327	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tchl_3330	PWY-6823	molybdenum cofactor biosynthesis
Tchl_3331	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tchl_3331	PWY-5723	Rubisco shunt
Tchl_3334	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_3338	PWY-5723	Rubisco shunt
Tchl_3344	PWY-6891	thiazole biosynthesis II (Bacillus)
Tchl_3344	PWY-6892	thiazole biosynthesis I (E. coli)
Tchl_3344	PWY-7560	methylerythritol phosphate pathway II
Tchl_3346	PWY-1042	glycolysis IV (plant cytosol)
Tchl_3346	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_3346	PWY-6886	1-butanol autotrophic biosynthesis
Tchl_3346	PWY-6901	superpathway of glucose and xylose degradation
Tchl_3346	PWY-7003	glycerol degradation to butanol
Tchl_3347	PWY-1042	glycolysis IV (plant cytosol)
Tchl_3347	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tchl_3347	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tchl_3347	PWY-5723	Rubisco shunt
Tchl_3347	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_3347	PWY-6886	1-butanol autotrophic biosynthesis
Tchl_3347	PWY-6901	superpathway of glucose and xylose degradation
Tchl_3347	PWY-7003	glycerol degradation to butanol
Tchl_3347	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tchl_3347	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tchl_3350	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tchl_3350	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tchl_3350	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tchl_3350	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tchl_3353	PWY-2161	folate polyglutamylation
Tchl_3354	PWY-4381	fatty acid biosynthesis initiation I
Tchl_3354	PWY-5743	3-hydroxypropanoate cycle
Tchl_3354	PWY-5744	glyoxylate assimilation
Tchl_3354	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_3354	PWY-6722	candicidin biosynthesis
Tchl_3361	PWY-2941	L-lysine biosynthesis II
Tchl_3361	PWY-2942	L-lysine biosynthesis III
Tchl_3361	PWY-5097	L-lysine biosynthesis VI
Tchl_3361	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tchl_3361	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
Tchl_3361	PWY-6559	spermidine biosynthesis II
Tchl_3361	PWY-6562	norspermidine biosynthesis
Tchl_3361	PWY-7153	grixazone biosynthesis
Tchl_3361	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tchl_3361	PWY-7977	Tchl_3361
Tchl_3362	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Tchl_3368	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tchl_3375	PWY-7980	Tchl_3375
Tchl_3376	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_3376	PWY-5109	2-methylbutanoate biosynthesis
Tchl_3376	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tchl_3376	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tchl_3376	PWY-5177	glutaryl-CoA degradation
Tchl_3376	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_3376	PWY-6435	4-hydroxybenzoate biosynthesis V
Tchl_3376	PWY-6583	pyruvate fermentation to butanol I
Tchl_3376	PWY-6863	pyruvate fermentation to hexanol
Tchl_3376	PWY-6883	pyruvate fermentation to butanol II
Tchl_3376	PWY-6944	androstenedione degradation
Tchl_3376	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tchl_3376	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tchl_3376	PWY-7007	methyl ketone biosynthesis
Tchl_3376	PWY-7046	4-coumarate degradation (anaerobic)
Tchl_3376	PWY-7094	fatty acid salvage
Tchl_3376	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tchl_3376	PWY-735	jasmonic acid biosynthesis
Tchl_3376	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tchl_3376	PWY-7606	docosahexaenoate biosynthesis III (mammals)
Tchl_3376	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_3376	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
Tchl_3376	PWY-7726	Tchl_3376
Tchl_3376	PWY-7778	Tchl_3376
Tchl_3376	PWY-7779	Tchl_3376
Tchl_3396	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tchl_3396	PWY-7118	chitin degradation to ethanol
Tchl_3396	PWY-7294	xylose degradation IV
Tchl_3396	PWY-7295	L-arabinose degradation IV
Tchl_3396	PWY-7854	Tchl_3396
Tchl_3399	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_3399	PWY-5109	2-methylbutanoate biosynthesis
Tchl_3399	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tchl_3399	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tchl_3399	PWY-5177	glutaryl-CoA degradation
Tchl_3399	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_3399	PWY-6435	4-hydroxybenzoate biosynthesis V
Tchl_3399	PWY-6583	pyruvate fermentation to butanol I
Tchl_3399	PWY-6863	pyruvate fermentation to hexanol
Tchl_3399	PWY-6883	pyruvate fermentation to butanol II
Tchl_3399	PWY-6944	androstenedione degradation
Tchl_3399	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tchl_3399	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tchl_3399	PWY-7007	methyl ketone biosynthesis
Tchl_3399	PWY-7046	4-coumarate degradation (anaerobic)
Tchl_3399	PWY-7094	fatty acid salvage
Tchl_3399	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tchl_3399	PWY-735	jasmonic acid biosynthesis
Tchl_3399	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tchl_3399	PWY-7606	docosahexaenoate biosynthesis III (mammals)
Tchl_3399	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_3399	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
Tchl_3399	PWY-7726	Tchl_3399
Tchl_3399	PWY-7778	Tchl_3399
Tchl_3399	PWY-7779	Tchl_3399
Tchl_3413	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_3413	PWY-5109	2-methylbutanoate biosynthesis
Tchl_3413	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tchl_3413	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tchl_3413	PWY-5177	glutaryl-CoA degradation
Tchl_3413	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_3413	PWY-6435	4-hydroxybenzoate biosynthesis V
Tchl_3413	PWY-6583	pyruvate fermentation to butanol I
Tchl_3413	PWY-6863	pyruvate fermentation to hexanol
Tchl_3413	PWY-6883	pyruvate fermentation to butanol II
Tchl_3413	PWY-6944	androstenedione degradation
Tchl_3413	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tchl_3413	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tchl_3413	PWY-7007	methyl ketone biosynthesis
Tchl_3413	PWY-7046	4-coumarate degradation (anaerobic)
Tchl_3413	PWY-7094	fatty acid salvage
Tchl_3413	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tchl_3413	PWY-735	jasmonic acid biosynthesis
Tchl_3413	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tchl_3413	PWY-7606	docosahexaenoate biosynthesis III (mammals)
Tchl_3413	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_3413	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
Tchl_3413	PWY-7726	Tchl_3413
Tchl_3413	PWY-7778	Tchl_3413
Tchl_3413	PWY-7779	Tchl_3413
Tchl_3419	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tchl_3419	PWY-5109	2-methylbutanoate biosynthesis
Tchl_3419	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tchl_3419	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tchl_3419	PWY-5177	glutaryl-CoA degradation
Tchl_3419	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_3419	PWY-6435	4-hydroxybenzoate biosynthesis V
Tchl_3419	PWY-6583	pyruvate fermentation to butanol I
Tchl_3419	PWY-6863	pyruvate fermentation to hexanol
Tchl_3419	PWY-6883	pyruvate fermentation to butanol II
Tchl_3419	PWY-6944	androstenedione degradation
Tchl_3419	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tchl_3419	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tchl_3419	PWY-7007	methyl ketone biosynthesis
Tchl_3419	PWY-7046	4-coumarate degradation (anaerobic)
Tchl_3419	PWY-7094	fatty acid salvage
Tchl_3419	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tchl_3419	PWY-735	jasmonic acid biosynthesis
Tchl_3419	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tchl_3419	PWY-7606	docosahexaenoate biosynthesis III (mammals)
Tchl_3419	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
Tchl_3419	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
Tchl_3419	PWY-7726	Tchl_3419
Tchl_3419	PWY-7778	Tchl_3419
Tchl_3419	PWY-7779	Tchl_3419
Tchl_3441	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tchl_3441	PWY-5743	3-hydroxypropanoate cycle
Tchl_3441	PWY-5744	glyoxylate assimilation
Tchl_3441	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tchl_3441	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tchl_3441	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tchl_3441	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tchl_3447	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Tchl_3447	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Tchl_3447	PWY-7766	Tchl_3447
Tchl_3455	PWY-6834	spermidine biosynthesis III
