locus-tag class description LQF09_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LQF09_00010 PF02767 DNA polymerase III beta subunit, central domain LQF09_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LQF09_00015 PF00204 DNA gyrase B LQF09_00015 PF00986 DNA gyrase B subunit, carboxyl terminus LQF09_00015 PF18053 DNA gyrase B subunit insert domain LQF09_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_00015 PF01751 Toprim domain LQF09_00035 PF00069 Protein kinase domain LQF09_00035 PF03793 PASTA domain LQF09_00050 PF00271 Helicase conserved C-terminal domain LQF09_00050 PF00176 SNF2 family N-terminal domain LQF09_00105 PF13411 MerR HTH family regulatory protein LQF09_00115 PF02600 Disulfide bond formation protein DsbB LQF09_00120 PF13462 Thioredoxin LQF09_00135 PF00873 AcrB/AcrD/AcrF family LQF09_00160 PF00486 Transcriptional regulatory protein, C terminal LQF09_00160 PF00072 Response regulator receiver domain LQF09_00165 PF00512 His Kinase A (phospho-acceptor) domain LQF09_00165 PF00672 HAMP domain LQF09_00165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_00180 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LQF09_00190 PF00512 His Kinase A (phospho-acceptor) domain LQF09_00190 PF00672 HAMP domain LQF09_00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_00195 PF00072 Response regulator receiver domain LQF09_00195 PF00486 Transcriptional regulatory protein, C terminal LQF09_00215 PF07732 Multicopper oxidase LQF09_00215 PF00394 Multicopper oxidase LQF09_00215 PF07731 Multicopper oxidase LQF09_00235 PF00529 HlyD membrane-fusion protein of T1SS LQF09_00235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_00240 PF00873 AcrB/AcrD/AcrF family LQF09_00255 PF04945 YHS domain LQF09_00270 PF11525 Copper resistance protein K LQF09_00315 PF02384 N-6 DNA Methylase LQF09_00315 PF12161 HsdM N-terminal domain LQF09_00345 PF00595 PDZ domain LQF09_00350 PF01435 Peptidase family M48 LQF09_00360 PF00085 Thioredoxin LQF09_00365 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_00365 PF17862 AAA+ lid domain LQF09_00365 PF01434 Peptidase family M41 LQF09_00370 PF13091 PLD-like domain LQF09_00370 PF13396 Phospholipase_D-nuclease N-terminal LQF09_00375 PF02861 Clp amino terminal domain, pathogenicity island component LQF09_00375 PF17871 AAA lid domain LQF09_00375 PF10431 C-terminal, D2-small domain, of ClpB protein LQF09_00375 PF07724 AAA domain (Cdc48 subfamily) LQF09_00375 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_00380 PF00011 Hsp20/alpha crystallin family LQF09_00385 PF12728 Helix-turn-helix domain LQF09_00425 PF01555 DNA methylase LQF09_00465 PF13007 Transposase C of IS166 homeodomain LQF09_00465 PF13817 IS66 C-terminal element LQF09_00465 PF03050 Transposase IS66 family LQF09_00465 PF13005 zinc-finger binding domain of transposase IS66 LQF09_00475 PF01699 Sodium/calcium exchanger protein LQF09_00485 PF03358 NADPH-dependent FMN reductase LQF09_00510 PF11855 Protein of unknown function (DUF3375) LQF09_00530 PF02463 RecF/RecN/SMC N terminal domain LQF09_00540 PF00849 RNA pseudouridylate synthase LQF09_00550 PF01863 Protein of unknown function DUF45 LQF09_00555 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LQF09_00555 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQF09_00560 PF03573 outer membrane porin, OprD family LQF09_00565 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LQF09_00565 PF01676 Metalloenzyme superfamily LQF09_00580 PF13614 AAA domain LQF09_00595 PF10672 S-adenosylmethionine-dependent methyltransferase LQF09_00595 PF17785 PUA-like domain LQF09_00630 PF07670 Nucleoside recognition LQF09_00635 PF03971 Monomeric isocitrate dehydrogenase LQF09_00640 PF06779 Uncharacterised MFS-type transporter YbfB LQF09_00645 PF00924 Mechanosensitive ion channel LQF09_00645 PF12795 Mechanosensitive ion channel porin domain LQF09_00645 PF12794 Mechanosensitive ion channel inner membrane domain 1 LQF09_00655 PF00563 EAL domain LQF09_00655 PF00990 Diguanylate cyclase, GGDEF domain LQF09_00655 PF03707 Bacterial signalling protein N terminal repeat LQF09_00675 PF08521 Two-component sensor kinase N-terminal LQF09_00675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_00675 PF00512 His Kinase A (phospho-acceptor) domain LQF09_00680 PF13609 Gram-negative porin LQF09_00685 PF00549 CoA-ligase LQF09_00685 PF08442 ATP-grasp domain LQF09_00695 PF03061 Thioesterase superfamily LQF09_00700 PF01970 Tripartite tricarboxylate transporter TctA family LQF09_00725 PF00182 Chitinase class I LQF09_00735 PF00563 EAL domain LQF09_00735 PF03707 Bacterial signalling protein N terminal repeat LQF09_00735 PF00990 Diguanylate cyclase, GGDEF domain LQF09_00740 PF00311 Phosphoenolpyruvate carboxylase LQF09_00745 PF02595 Glycerate kinase family LQF09_00750 PF05651 Putative sugar diacid recognition LQF09_00750 PF17853 GGDEF-like domain LQF09_00750 PF13556 PucR C-terminal helix-turn-helix domain LQF09_00760 PF00009 Elongation factor Tu GTP binding domain LQF09_00760 PF03144 Elongation factor Tu domain 2 LQF09_00760 PF16658 Class II release factor RF3, C-terminal domain LQF09_00775 PF00672 HAMP domain LQF09_00775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_00780 PF04381 Putative exonuclease, RdgC LQF09_00790 PF01479 S4 domain LQF09_00790 PF00849 RNA pseudouridylate synthase LQF09_00805 PF09285 Elongation factor P, C-terminal LQF09_00805 PF08207 Elongation factor P (EF-P) KOW-like domain LQF09_00805 PF01132 Elongation factor P (EF-P) OB domain LQF09_00820 PF17760 UvrA interaction domain LQF09_00820 PF17755 UvrA DNA-binding domain LQF09_00820 PF00005 ABC transporter LQF09_00830 PF01322 Cytochrome C' LQF09_00835 PF00672 HAMP domain LQF09_00835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_00840 PF13180 PDZ domain LQF09_00845 PF07715 TonB-dependent Receptor Plug Domain LQF09_00845 PF00593 TonB dependent receptor LQF09_00850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_00850 PF03466 LysR substrate binding domain LQF09_00855 PF00210 Ferritin-like domain LQF09_00860 PF01037 Lrp/AsnC ligand binding domain LQF09_00865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_00865 PF00205 Thiamine pyrophosphate enzyme, central domain LQF09_00865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQF09_00870 PF01131 DNA topoisomerase LQF09_00870 PF01751 Toprim domain LQF09_00875 PF04361 Protein of unknown function (DUF494) LQF09_00880 PF02481 DNA recombination-mediator protein A LQF09_00880 PF17782 DprA winged helix domain LQF09_00885 PF01476 LysM domain LQF09_00890 PF01327 Polypeptide deformylase LQF09_00895 PF02911 Formyl transferase, C-terminal domain LQF09_00895 PF00551 Formyl transferase LQF09_00900 PF01435 Peptidase family M48 LQF09_00905 PF13676 TIR domain LQF09_00915 PF00005 ABC transporter LQF09_00920 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_00925 PF08534 Redoxin LQF09_00940 PF00710 Asparaginase, N-terminal LQF09_00940 PF17763 Glutaminase/Asparaginase C-terminal domain LQF09_00945 PF00206 Lyase LQF09_00945 PF10415 Fumarase C C-terminus LQF09_00950 PF01235 Sodium:alanine symporter family LQF09_00960 PF00378 Enoyl-CoA hydratase/isomerase LQF09_00970 PF00990 Diguanylate cyclase, GGDEF domain LQF09_00970 PF00563 EAL domain LQF09_00970 PF03707 Bacterial signalling protein N terminal repeat LQF09_00980 PF00664 ABC transporter transmembrane region LQF09_00980 PF00005 ABC transporter LQF09_00985 PF14743 DNA ligase OB-like domain LQF09_00985 PF01068 ATP dependent DNA ligase domain LQF09_01025 PF00682 HMGL-like LQF09_01025 PF08502 LeuA allosteric (dimerisation) domain LQF09_01030 PF01037 Lrp/AsnC ligand binding domain LQF09_01035 PF12849 PBP superfamily domain LQF09_01050 PF01739 CheR methyltransferase, SAM binding domain LQF09_01050 PF03705 CheR methyltransferase, all-alpha domain LQF09_01055 PF01339 CheB methylesterase LQF09_01055 PF00072 Response regulator receiver domain LQF09_01060 PF01739 CheR methyltransferase, SAM binding domain LQF09_01060 PF03705 CheR methyltransferase, all-alpha domain LQF09_01065 PF03975 CheD chemotactic sensory transduction LQF09_01070 PF00672 HAMP domain LQF09_01070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_01075 PF01584 CheW-like domain LQF09_01080 PF00672 HAMP domain LQF09_01080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_01085 PF01627 Hpt domain LQF09_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_01085 PF01584 CheW-like domain LQF09_01085 PF09078 CheY binding LQF09_01085 PF02895 Signal transducing histidine kinase, homodimeric domain LQF09_01095 PF00672 HAMP domain LQF09_01095 PF17200 Single Cache domain 2 LQF09_01095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_01100 PF00072 Response regulator receiver domain LQF09_01105 PF01134 Glucose inhibited division protein A LQF09_01105 PF13932 GidA associated domain LQF09_01110 PF02527 rRNA small subunit methyltransferase G LQF09_01115 PF13614 AAA domain LQF09_01120 PF17762 HTH domain found in ParB protein LQF09_01120 PF02195 ParB-like nuclease domain LQF09_01135 PF00119 ATP synthase A chain LQF09_01140 PF00137 ATP synthase subunit C LQF09_01145 PF00430 ATP synthase B/B' CF(0) LQF09_01150 PF00213 ATP synthase delta (OSCP) subunit LQF09_01155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQF09_01155 PF00306 ATP synthase alpha/beta chain, C terminal domain LQF09_01155 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQF09_01160 PF00231 ATP synthase LQF09_01165 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQF09_01165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQF09_01170 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LQF09_01170 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LQF09_01185 PF01209 ubiE/COQ5 methyltransferase family LQF09_01195 PF00072 Response regulator receiver domain LQF09_01195 PF00486 Transcriptional regulatory protein, C terminal LQF09_01200 PF00989 PAS fold LQF09_01200 PF11808 Phosphate regulon sensor protein PhoR LQF09_01200 PF00512 His Kinase A (phospho-acceptor) domain LQF09_01200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_01215 PF13230 Glutamine amidotransferases class-II LQF09_01220 PF02934 GatB/GatE catalytic domain LQF09_01220 PF02637 GatB domain LQF09_01230 PF01425 Amidase LQF09_01235 PF02686 Glu-tRNAGln amidotransferase C subunit LQF09_01255 PF03717 Penicillin-binding Protein dimerisation domain LQF09_01255 PF00905 Penicillin binding protein transpeptidase domain LQF09_01260 PF01098 Cell cycle protein LQF09_01265 PF03330 Lytic transglycolase LQF09_01265 PF05036 Sporulation related domain LQF09_01270 PF00768 D-alanyl-D-alanine carboxypeptidase LQF09_01270 PF07943 Penicillin-binding protein 5, C-terminal domain LQF09_01275 PF01063 Amino-transferase class IV LQF09_01280 PF04359 Protein of unknown function (DUF493) LQF09_01285 PF03099 Biotin/lipoate A/B protein ligase family LQF09_01290 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LQF09_01290 PF04055 Radical SAM superfamily LQF09_01305 PF13361 UvrD-like helicase C-terminal domain LQF09_01305 PF00580 UvrD/REP helicase N-terminal domain LQF09_01325 PF08019 Phosphoethanolamine transferase EptA/EptB LQF09_01325 PF00884 Sulfatase LQF09_01330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_01330 PF00512 His Kinase A (phospho-acceptor) domain LQF09_01335 PF00072 Response regulator receiver domain LQF09_01335 PF00486 Transcriptional regulatory protein, C terminal LQF09_01340 PF01545 Cation efflux family LQF09_01340 PF16916 Dimerisation domain of Zinc Transporter LQF09_01355 PF07836 DmpG-like communication domain LQF09_01355 PF00682 HMGL-like LQF09_01360 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LQF09_01360 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQF09_01365 PF01557 Fumarylacetoacetate (FAA) hydrolase family LQF09_01375 PF01613 Flavin reductase like domain LQF09_01380 PF00171 Aldehyde dehydrogenase family LQF09_01385 PF00890 FAD binding domain LQF09_01390 PF00890 FAD binding domain LQF09_01400 PF00501 AMP-binding enzyme LQF09_01400 PF13193 AMP-binding enzyme C-terminal domain LQF09_01405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQF09_01410 PF13426 PAS domain LQF09_01410 PF08447 PAS fold LQF09_01410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_01415 PF02321 Outer membrane efflux protein LQF09_01420 PF00873 AcrB/AcrD/AcrF family LQF09_01425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_01440 PF00106 short chain dehydrogenase LQF09_01445 PF00378 Enoyl-CoA hydratase/isomerase LQF09_01455 PF00672 HAMP domain LQF09_01455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_01460 PF13593 SBF-like CPA transporter family (DUF4137) LQF09_01505 PF03050 Transposase IS66 family LQF09_01505 PF13817 IS66 C-terminal element LQF09_01505 PF13007 Transposase C of IS166 homeodomain LQF09_01505 PF13005 zinc-finger binding domain of transposase IS66 LQF09_01530 PF13007 Transposase C of IS166 homeodomain LQF09_01530 PF03050 Transposase IS66 family LQF09_01530 PF13817 IS66 C-terminal element LQF09_01530 PF13005 zinc-finger binding domain of transposase IS66 LQF09_01535 PF05717 IS66 Orf2 like protein LQF09_01540 PF13276 HTH-like domain LQF09_01540 PF00665 Integrase core domain LQF09_01540 PF01527 Transposase LQF09_01545 PF07690 Major Facilitator Superfamily LQF09_01555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_01555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_01570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_01570 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_01570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_01575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_01575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_01575 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_01580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_01580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_01580 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_01585 PF07690 Major Facilitator Superfamily LQF09_01605 PF00296 Luciferase-like monooxygenase LQF09_01625 PF01594 AI-2E family transporter LQF09_01635 PF00689 Cation transporting ATPase, C-terminus LQF09_01635 PF00690 Cation transporter/ATPase, N-terminus LQF09_01645 PF13808 DDE_Tnp_1-associated LQF09_01645 PF01609 Transposase DDE domain LQF09_01695 PF00144 Beta-lactamase LQF09_01715 PF00501 AMP-binding enzyme LQF09_01715 PF13193 AMP-binding enzyme C-terminal domain LQF09_01720 PF02515 CoA-transferase family III LQF09_01725 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_01725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_01725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_01735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQF09_01735 PF00378 Enoyl-CoA hydratase/isomerase LQF09_01735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQF09_01740 PF02803 Thiolase, C-terminal domain LQF09_01740 PF00108 Thiolase, N-terminal domain LQF09_01745 PF00440 Bacterial regulatory proteins, tetR family LQF09_01760 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LQF09_01760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_01770 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_01780 PF07044 Protein of unknown function (DUF1329) LQF09_01790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQF09_01790 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_01800 PF01012 Electron transfer flavoprotein domain LQF09_01805 PF01012 Electron transfer flavoprotein domain LQF09_01805 PF00766 Electron transfer flavoprotein FAD-binding domain LQF09_01820 PF00106 short chain dehydrogenase LQF09_01825 PF00106 short chain dehydrogenase LQF09_01835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_01840 PF00873 AcrB/AcrD/AcrF family LQF09_01845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LQF09_01845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LQF09_01850 PF03466 LysR substrate binding domain LQF09_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_01855 PF01914 MarC family integral membrane protein LQF09_01880 PF03109 ABC1 family LQF09_01890 PF01593 Flavin containing amine oxidoreductase LQF09_01895 PF00875 DNA photolyase LQF09_01895 PF03441 FAD binding domain of DNA photolyase LQF09_01905 PF00875 DNA photolyase LQF09_01905 PF03441 FAD binding domain of DNA photolyase LQF09_01910 PF00892 EamA-like transporter family LQF09_01930 PF13439 Glycosyltransferase Family 4 LQF09_01930 PF00534 Glycosyl transferases group 1 LQF09_01935 PF03707 Bacterial signalling protein N terminal repeat LQF09_01935 PF00563 EAL domain LQF09_01935 PF00990 Diguanylate cyclase, GGDEF domain LQF09_01945 PF01323 DSBA-like thioredoxin domain LQF09_01950 PF01136 Peptidase family U32 LQF09_01950 PF16325 Peptidase family U32 C-terminal domain LQF09_01955 PF00563 EAL domain LQF09_01955 PF00990 Diguanylate cyclase, GGDEF domain LQF09_01955 PF03707 Bacterial signalling protein N terminal repeat LQF09_01960 PF03458 UPF0126 domain LQF09_01975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LQF09_01975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LQF09_01980 PF00753 Metallo-beta-lactamase superfamily LQF09_01990 PF02653 Branched-chain amino acid transport system / permease component LQF09_01995 PF02653 Branched-chain amino acid transport system / permease component LQF09_01995 PF11862 Domain of unknown function (DUF3382) LQF09_02005 PF02441 Flavoprotein LQF09_02015 PF00633 Helix-hairpin-helix motif LQF09_02015 PF00730 HhH-GPD superfamily base excision DNA repair protein LQF09_02015 PF14815 NUDIX domain LQF09_02020 PF01613 Flavin reductase like domain LQF09_02030 PF00216 Bacterial DNA-binding protein LQF09_02035 PF00271 Helicase conserved C-terminal domain LQF09_02035 PF00270 DEAD/DEAH box helicase LQF09_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_02045 PF03466 LysR substrate binding domain LQF09_02050 PF04955 HupE / UreJ protein LQF09_02055 PF08448 PAS fold LQF09_02055 PF08447 PAS fold LQF09_02055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_02060 PF00374 Nickel-dependent hydrogenase LQF09_02065 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LQF09_02065 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LQF09_02070 PF02954 Bacterial regulatory protein, Fis family LQF09_02070 PF00072 Response regulator receiver domain LQF09_02070 PF00158 Sigma-54 interaction domain LQF09_02075 PF00378 Enoyl-CoA hydratase/isomerase LQF09_02075 PF00551 Formyl transferase LQF09_02075 PF02911 Formyl transferase, C-terminal domain LQF09_02080 PF00586 AIR synthase related protein, N-terminal domain LQF09_02080 PF02769 AIR synthase related protein, C-terminal domain LQF09_02085 PF01924 Hydrogenase formation hypA family LQF09_02090 PF01455 HupF/HypC family LQF09_02095 PF01300 Telomere recombination LQF09_02095 PF07503 HypF finger LQF09_02095 PF17788 HypF Kae1-like domain LQF09_02095 PF00708 Acylphosphatase LQF09_02100 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQF09_02105 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LQF09_02125 PF01750 Hydrogenase maturation protease LQF09_02130 PF00374 Nickel-dependent hydrogenase LQF09_02135 PF03916 Polysulphide reductase, NrfD LQF09_02140 PF13247 4Fe-4S dicluster domain LQF09_02145 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LQF09_02145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LQF09_02160 PF01029 NusB family LQF09_02165 PF00885 6,7-dimethyl-8-ribityllumazine synthase LQF09_02170 PF00925 GTP cyclohydrolase II LQF09_02170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LQF09_02175 PF00677 Lumazine binding domain LQF09_02190 PF02683 Cytochrome C biogenesis protein transmembrane region LQF09_02190 PF11412 Disulphide bond corrector protein DsbC LQF09_02235 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LQF09_02245 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LQF09_02250 PF01850 PIN domain LQF09_02280 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LQF09_02285 PF01850 PIN domain LQF09_02305 PF13417 Glutathione S-transferase, N-terminal domain LQF09_02305 PF00043 Glutathione S-transferase, C-terminal domain LQF09_02335 PF14403 Circularly permuted ATP-grasp type 2 LQF09_02335 PF04168 A predicted alpha-helical domain with a conserved ER motif. LQF09_02340 PF01841 Transglutaminase-like superfamily LQF09_02340 PF08379 Bacterial transglutaminase-like N-terminal region LQF09_02345 PF14403 Circularly permuted ATP-grasp type 2 LQF09_02370 PF13356 Arm DNA-binding domain LQF09_02370 PF00589 Phage integrase family LQF09_02380 PF01381 Helix-turn-helix LQF09_02435 PF00565 Staphylococcal nuclease homologue LQF09_02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_02465 PF03466 LysR substrate binding domain LQF09_02470 PF00171 Aldehyde dehydrogenase family LQF09_02475 PF05199 GMC oxidoreductase LQF09_02475 PF00732 GMC oxidoreductase LQF09_02480 PF03466 LysR substrate binding domain LQF09_02480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_02485 PF00589 Phage integrase family LQF09_02485 PF02899 Phage integrase, N-terminal SAM-like domain LQF09_02490 PF00589 Phage integrase family LQF09_02490 PF13495 Phage integrase, N-terminal SAM-like domain LQF09_02495 PF02899 Phage integrase, N-terminal SAM-like domain LQF09_02495 PF00589 Phage integrase family LQF09_02510 PF13700 Domain of unknown function (DUF4158) LQF09_02510 PF01526 Tn3 transposase DDE domain LQF09_02515 PF02796 Helix-turn-helix domain of resolvase LQF09_02515 PF00239 Resolvase, N terminal domain LQF09_02525 PF08681 Protein of unknown function (DUF1778) LQF09_02540 PF14040 Deoxyribonuclease NucA/NucB LQF09_02565 PF01726 LexA DNA binding domain LQF09_02565 PF00717 Peptidase S24-like LQF09_02595 PF00665 Integrase core domain LQF09_02595 PF13276 HTH-like domain LQF09_02595 PF01527 Transposase LQF09_02600 PF05717 IS66 Orf2 like protein LQF09_02610 PF02899 Phage integrase, N-terminal SAM-like domain LQF09_02610 PF00589 Phage integrase family LQF09_02620 PF01695 IstB-like ATP binding protein LQF09_02625 PF00665 Integrase core domain LQF09_02640 PF13005 zinc-finger binding domain of transposase IS66 LQF09_02640 PF13007 Transposase C of IS166 homeodomain LQF09_02640 PF13817 IS66 C-terminal element LQF09_02640 PF03050 Transposase IS66 family LQF09_02660 PF01381 Helix-turn-helix LQF09_02665 PF00565 Staphylococcal nuclease homologue LQF09_02675 PF13808 DDE_Tnp_1-associated LQF09_02675 PF01609 Transposase DDE domain LQF09_02680 PF13817 IS66 C-terminal element LQF09_02680 PF03050 Transposase IS66 family LQF09_02680 PF13005 zinc-finger binding domain of transposase IS66 LQF09_02680 PF13007 Transposase C of IS166 homeodomain LQF09_02720 PF00072 Response regulator receiver domain LQF09_02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_02720 PF00672 HAMP domain LQF09_02720 PF00512 His Kinase A (phospho-acceptor) domain LQF09_02720 PF01627 Hpt domain LQF09_02720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQF09_02730 PF02075 Crossover junction endodeoxyribonuclease RuvC LQF09_02740 PF01709 Transcriptional regulator LQF09_02745 PF05872 Bacterial protein of unknown function (DUF853) LQF09_02750 PF00990 Diguanylate cyclase, GGDEF domain LQF09_02750 PF00072 Response regulator receiver domain LQF09_02755 PF03707 Bacterial signalling protein N terminal repeat LQF09_02755 PF00990 Diguanylate cyclase, GGDEF domain LQF09_02755 PF00563 EAL domain LQF09_02760 PF00990 Diguanylate cyclase, GGDEF domain LQF09_02760 PF00072 Response regulator receiver domain LQF09_02765 PF07715 TonB-dependent Receptor Plug Domain LQF09_02765 PF00593 TonB dependent receptor LQF09_02775 PF00072 Response regulator receiver domain LQF09_02775 PF01627 Hpt domain LQF09_02775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQF09_02775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_02775 PF00672 HAMP domain LQF09_02775 PF00512 His Kinase A (phospho-acceptor) domain LQF09_02785 PF07715 TonB-dependent Receptor Plug Domain LQF09_02785 PF00593 TonB dependent receptor LQF09_02790 PF02219 Methylenetetrahydrofolate reductase LQF09_02795 PF01728 FtsJ-like methyltransferase LQF09_02795 PF01479 S4 domain LQF09_02800 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LQF09_02800 PF05221 S-adenosyl-L-homocysteine hydrolase LQF09_02805 PF01699 Sodium/calcium exchanger protein LQF09_02810 PF02773 S-adenosylmethionine synthetase, C-terminal domain LQF09_02810 PF02772 S-adenosylmethionine synthetase, central domain LQF09_02810 PF00438 S-adenosylmethionine synthetase, N-terminal domain LQF09_02820 PF03279 Bacterial lipid A biosynthesis acyltransferase LQF09_02825 PF01678 Diaminopimelate epimerase LQF09_02835 PF02899 Phage integrase, N-terminal SAM-like domain LQF09_02835 PF00589 Phage integrase family LQF09_02850 PF17864 RuvB AAA lid domain LQF09_02850 PF05491 RuvB C-terminal winged helix domain LQF09_02850 PF05496 Holliday junction DNA helicase RuvB P-loop domain LQF09_02855 PF07499 RuvA, C-terminal domain LQF09_02855 PF01330 RuvA N terminal domain LQF09_02875 PF10150 Ribonuclease E/G family LQF09_02875 PF00575 S1 RNA binding domain LQF09_02880 PF02545 Maf-like protein LQF09_02885 PF02590 Predicted SPOUT methyltransferase LQF09_02895 PF01467 Cytidylyltransferase-like LQF09_02910 PF01636 Phosphotransferase enzyme family LQF09_02925 PF03641 Possible lysine decarboxylase LQF09_02930 PF01367 5'-3' exonuclease, C-terminal SAM fold LQF09_02930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LQF09_02930 PF00476 DNA polymerase family A LQF09_02930 PF01612 3'-5' exonuclease LQF09_02935 PF00664 ABC transporter transmembrane region LQF09_02935 PF00005 ABC transporter LQF09_02940 PF05685 Putative restriction endonuclease LQF09_02945 PF02719 Polysaccharide biosynthesis protein LQF09_02955 PF00953 Glycosyl transferase family 4 LQF09_02960 PF01370 NAD dependent epimerase/dehydratase family LQF09_02970 PF02350 UDP-N-acetylglucosamine 2-epimerase LQF09_02975 PF01370 NAD dependent epimerase/dehydratase family LQF09_02980 PF02719 Polysaccharide biosynthesis protein LQF09_02980 PF08485 Polysaccharide biosynthesis protein C-terminal LQF09_02985 PF00977 Histidine biosynthesis protein LQF09_02990 PF00117 Glutamine amidotransferase class-I LQF09_03000 PF00535 Glycosyl transferase family 2 LQF09_03020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQF09_03025 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_03030 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LQF09_03030 PF01266 FAD dependent oxidoreductase LQF09_03035 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LQF09_03035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LQF09_03040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQF09_03040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQF09_03040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQF09_03045 PF01380 SIS domain LQF09_03060 PF01370 NAD dependent epimerase/dehydratase family LQF09_03065 PF16363 GDP-mannose 4,6 dehydratase LQF09_03110 PF13635 Domain of unknown function (DUF4143) LQF09_03110 PF13173 AAA domain LQF09_03115 PF00300 Histidine phosphatase superfamily (branch 1) LQF09_03120 PF01850 PIN domain LQF09_03125 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LQF09_03130 PF02654 Cobalamin-5-phosphate synthase LQF09_03135 PF02277 Phosphoribosyltransferase LQF09_03140 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LQF09_03145 PF07715 TonB-dependent Receptor Plug Domain LQF09_03145 PF00593 TonB dependent receptor LQF09_03150 PF01032 FecCD transport family LQF09_03155 PF00005 ABC transporter LQF09_03160 PF10414 Sirohaem synthase dimerisation region LQF09_03160 PF14824 Sirohaem biosynthesis protein central LQF09_03160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_03165 PF07685 CobB/CobQ-like glutamine amidotransferase domain LQF09_03165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LQF09_03170 PF03466 LysR substrate binding domain LQF09_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_03175 PF01810 LysE type translocator LQF09_03180 PF02666 Phosphatidylserine decarboxylase LQF09_03185 PF00478 IMP dehydrogenase / GMP reductase domain LQF09_03185 PF00571 CBS domain LQF09_03190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LQF09_03190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LQF09_03195 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQF09_03195 PF00512 His Kinase A (phospho-acceptor) domain LQF09_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_03205 PF00990 Diguanylate cyclase, GGDEF domain LQF09_03205 PF03707 Bacterial signalling protein N terminal repeat LQF09_03205 PF00563 EAL domain LQF09_03210 PF00271 Helicase conserved C-terminal domain LQF09_03210 PF00270 DEAD/DEAH box helicase LQF09_03220 PF01497 Periplasmic binding protein LQF09_03225 PF00155 Aminotransferase class I and II LQF09_03230 PF03186 CobD/Cbib protein LQF09_03230 PF17113 Regulatory signalling modulator protein AmpE LQF09_03235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LQF09_03235 PF07685 CobB/CobQ-like glutamine amidotransferase domain LQF09_03240 PF14489 QueF-like protein LQF09_03240 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LQF09_03245 PF00034 Cytochrome c LQF09_03250 PF03707 Bacterial signalling protein N terminal repeat LQF09_03250 PF00563 EAL domain LQF09_03250 PF00990 Diguanylate cyclase, GGDEF domain LQF09_03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_03255 PF00512 His Kinase A (phospho-acceptor) domain LQF09_03255 PF00989 PAS fold LQF09_03255 PF13188 PAS domain LQF09_03255 PF13426 PAS domain LQF09_03260 PF00563 EAL domain LQF09_03260 PF08668 HDOD domain LQF09_03265 PF00970 Oxidoreductase FAD-binding domain LQF09_03265 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_03265 PF00175 Oxidoreductase NAD-binding domain LQF09_03275 PF03653 Uncharacterised protein family (UPF0093) LQF09_03280 PF00072 Response regulator receiver domain LQF09_03280 PF02954 Bacterial regulatory protein, Fis family LQF09_03280 PF00158 Sigma-54 interaction domain LQF09_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_03285 PF00512 His Kinase A (phospho-acceptor) domain LQF09_03285 PF00989 PAS fold LQF09_03290 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LQF09_03300 PF12804 MobA-like NTP transferase domain LQF09_03305 PF02634 FdhD/NarQ family LQF09_03335 PF01568 Molydopterin dinucleotide binding domain LQF09_03335 PF00384 Molybdopterin oxidoreductase LQF09_03335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQF09_03335 PF12838 4Fe-4S dicluster domain LQF09_03335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQF09_03340 PF13247 4Fe-4S dicluster domain LQF09_03355 PF00990 Diguanylate cyclase, GGDEF domain LQF09_03355 PF00563 EAL domain LQF09_03355 PF03707 Bacterial signalling protein N terminal repeat LQF09_03365 PF01170 Putative RNA methylase family UPF0020 LQF09_03365 PF02926 THUMP domain LQF09_03370 PF00437 Type II/IV secretion system protein LQF09_03375 PF00437 Type II/IV secretion system protein LQF09_03380 PF01168 Alanine racemase, N-terminal domain LQF09_03385 PF14748 Pyrroline-5-carboxylate reductase dimerisation LQF09_03385 PF03807 NADP oxidoreductase coenzyme F420-dependent LQF09_03390 PF02325 YGGT family LQF09_03395 PF01979 Amidohydrolase family LQF09_03400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LQF09_03400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LQF09_03405 PF00156 Phosphoribosyl transferase domain LQF09_03410 PF03652 Holliday junction resolvase LQF09_03415 PF02622 Uncharacterized ACR, COG1678 LQF09_03420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_03425 PF00875 DNA photolyase LQF09_03425 PF03441 FAD binding domain of DNA photolyase LQF09_03430 PF00155 Aminotransferase class I and II LQF09_03435 PF01584 CheW-like domain LQF09_03435 PF02895 Signal transducing histidine kinase, homodimeric domain LQF09_03435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_03435 PF01627 Hpt domain LQF09_03435 PF07194 P2 response regulator binding domain LQF09_03440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_03440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LQF09_03450 PF00072 Response regulator receiver domain LQF09_03455 PF00072 Response regulator receiver domain LQF09_03460 PF00301 Rubredoxin LQF09_03470 PF02581 Thiamine monophosphate synthase LQF09_03475 PF00202 Aminotransferase class-III LQF09_03480 PF03448 MgtE intracellular N domain LQF09_03480 PF01769 Divalent cation transporter LQF09_03480 PF00571 CBS domain LQF09_03485 PF00912 Transglycosylase LQF09_03490 PF08501 Shikimate dehydrogenase substrate binding domain LQF09_03490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LQF09_03490 PF01488 Shikimate / quinate 5-dehydrogenase LQF09_03500 PF00773 RNB domain LQF09_03505 PF00892 EamA-like transporter family LQF09_03510 PF01209 ubiE/COQ5 methyltransferase family LQF09_03515 PF05728 Uncharacterised protein family (UPF0227) LQF09_03520 PF02673 Bacitracin resistance protein BacA LQF09_03525 PF03692 Putative zinc- or iron-chelating domain LQF09_03530 PF10649 Protein of unknown function (DUF2478) LQF09_03530 PF00005 ABC transporter LQF09_03530 PF03459 TOBE domain LQF09_03535 PF00270 DEAD/DEAH box helicase LQF09_03535 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LQF09_03535 PF00271 Helicase conserved C-terminal domain LQF09_03535 PF04408 Helicase associated domain (HA2) LQF09_03535 PF11898 Domain of unknown function (DUF3418) LQF09_03545 PF01250 Ribosomal protein S6 LQF09_03555 PF01084 Ribosomal protein S18 LQF09_03560 PF01281 Ribosomal protein L9, N-terminal domain LQF09_03560 PF03948 Ribosomal protein L9, C-terminal domain LQF09_03565 PF03796 DnaB-like helicase C terminal domain LQF09_03565 PF00772 DnaB-like helicase N terminal domain LQF09_03595 PF01494 FAD binding domain LQF09_03600 PF13098 Thioredoxin-like domain LQF09_03600 PF10411 Disulfide bond isomerase protein N-terminus LQF09_03610 PF06725 3D domain LQF09_03610 PF03562 MltA specific insert domain LQF09_03620 PF02581 Thiamine monophosphate synthase LQF09_03625 PF03884 DNA gyrase inhibitor YacG LQF09_03630 PF07072 Cell division protein LQF09_03635 PF01121 Dephospho-CoA kinase LQF09_03645 PF00291 Pyridoxal-phosphate dependent enzyme LQF09_03650 PF03309 Type III pantothenate kinase LQF09_03655 PF03099 Biotin/lipoate A/B protein ligase family LQF09_03655 PF02237 Biotin protein ligase C terminal domain LQF09_03655 PF08279 HTH domain LQF09_03660 PF00158 Sigma-54 interaction domain LQF09_03660 PF00072 Response regulator receiver domain LQF09_03660 PF02954 Bacterial regulatory protein, Fis family LQF09_03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_03665 PF00512 His Kinase A (phospho-acceptor) domain LQF09_03665 PF00989 PAS fold LQF09_03675 PF03951 Glutamine synthetase, beta-Grasp domain LQF09_03675 PF00120 Glutamine synthetase, catalytic domain LQF09_03680 PF16916 Dimerisation domain of Zinc Transporter LQF09_03680 PF01545 Cation efflux family LQF09_03685 PF00581 Rhodanese-like domain LQF09_03690 PF02445 Quinolinate synthetase A protein LQF09_03695 PF03372 Endonuclease/Exonuclease/phosphatase family LQF09_03700 PF13091 PLD-like domain LQF09_03705 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQF09_03710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_03715 PF00072 Response regulator receiver domain LQF09_03715 PF00990 Diguanylate cyclase, GGDEF domain LQF09_03740 PF12679 ABC-2 family transporter protein LQF09_03745 PF00005 ABC transporter LQF09_03750 PF05048 Periplasmic copper-binding protein (NosD) LQF09_03760 PF04205 FMN-binding domain LQF09_03760 PF12801 4Fe-4S binding domain LQF09_03765 PF18764 Nitrous oxide reductase propeller repeat LQF09_03765 PF13473 Cupredoxin-like domain LQF09_03765 PF18793 Nitrous oxide reductase propeller repeat 2 LQF09_03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_03770 PF00512 His Kinase A (phospho-acceptor) domain LQF09_03775 PF00072 Response regulator receiver domain LQF09_03785 PF00924 Mechanosensitive ion channel LQF09_03800 PF01926 50S ribosome-binding GTPase LQF09_03800 PF06071 Protein of unknown function (DUF933) LQF09_03810 PF01195 Peptidyl-tRNA hydrolase LQF09_03815 PF14693 Ribosomal protein TL5, C-terminal domain LQF09_03815 PF01386 Ribosomal L25p family LQF09_03820 PF14572 Phosphoribosyl synthetase-associated domain LQF09_03820 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LQF09_03830 PF08544 GHMP kinases C terminal LQF09_03830 PF00288 GHMP kinases N terminal domain LQF09_03835 PF03550 Outer membrane lipoprotein LolB LQF09_03845 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LQF09_03845 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LQF09_03845 PF06827 Zinc finger found in FPG and IleRS LQF09_03850 PF00350 Dynamin family LQF09_03855 PF00037 4Fe-4S binding domain LQF09_03860 PF01467 Cytidylyltransferase-like LQF09_03870 PF00675 Insulinase (Peptidase family M16) LQF09_03870 PF05193 Peptidase M16 inactive domain LQF09_03875 PF00675 Insulinase (Peptidase family M16) LQF09_03875 PF05193 Peptidase M16 inactive domain LQF09_03880 PF00448 SRP54-type protein, GTPase domain LQF09_03880 PF02881 SRP54-type protein, helical bundle domain LQF09_03885 PF00005 ABC transporter LQF09_03890 PF18075 FtsX extracellular domain LQF09_03895 PF00578 AhpC/TSA family LQF09_03895 PF10417 C-terminal domain of 1-Cys peroxiredoxin LQF09_03900 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_03900 PF13192 Thioredoxin domain LQF09_03905 PF00664 ABC transporter transmembrane region LQF09_03905 PF00005 ABC transporter LQF09_03910 PF13188 PAS domain LQF09_03910 PF00563 EAL domain LQF09_03910 PF03707 Bacterial signalling protein N terminal repeat LQF09_03910 PF00990 Diguanylate cyclase, GGDEF domain LQF09_03925 PF01494 FAD binding domain LQF09_03935 PF03466 LysR substrate binding domain LQF09_03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_03960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_03965 PF14497 Glutathione S-transferase, C-terminal domain LQF09_03965 PF02798 Glutathione S-transferase, N-terminal domain LQF09_03970 PF07690 Major Facilitator Superfamily LQF09_03975 PF00378 Enoyl-CoA hydratase/isomerase LQF09_03980 PF02515 CoA-transferase family III LQF09_03995 PF02146 Sir2 family LQF09_04000 PF01810 LysE type translocator LQF09_04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_04005 PF03466 LysR substrate binding domain LQF09_04010 PF00456 Transketolase, thiamine diphosphate binding domain LQF09_04015 PF02780 Transketolase, C-terminal domain LQF09_04015 PF02779 Transketolase, pyrimidine binding domain LQF09_04025 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_04025 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LQF09_04030 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LQF09_04030 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_04035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_04040 PF02780 Transketolase, C-terminal domain LQF09_04040 PF00456 Transketolase, thiamine diphosphate binding domain LQF09_04040 PF02779 Transketolase, pyrimidine binding domain LQF09_04045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQF09_04045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQF09_04050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_04050 PF08447 PAS fold LQF09_04050 PF13426 PAS domain LQF09_04060 PF00672 HAMP domain LQF09_04060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_04120 PF04055 Radical SAM superfamily LQF09_04120 PF01938 TRAM domain LQF09_04120 PF00919 Uncharacterized protein family UPF0004 LQF09_04125 PF02562 PhoH-like protein LQF09_04130 PF02130 Uncharacterized protein family UPF0054 LQF09_04135 PF00571 CBS domain LQF09_04135 PF03471 Transporter associated domain LQF09_04140 PF00795 Carbon-nitrogen hydrolase LQF09_04145 PF02091 Glycyl-tRNA synthetase alpha subunit LQF09_04150 PF02092 Glycyl-tRNA synthetase beta subunit LQF09_04150 PF05746 DALR anticodon binding domain LQF09_04160 PF01553 Acyltransferase LQF09_04165 PF01329 Pterin 4 alpha carbinolamine dehydratase LQF09_04175 PF00378 Enoyl-CoA hydratase/isomerase LQF09_04180 PF03968 OstA-like protein LQF09_04190 PF00571 CBS domain LQF09_04190 PF01380 SIS domain LQF09_04215 PF00482 Type II secretion system (T2SS), protein F LQF09_04220 PF00437 Type II/IV secretion system protein LQF09_04220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQF09_04225 PF00263 Bacterial type II and III secretion system protein LQF09_04225 PF03958 Bacterial type II/III secretion system short domain LQF09_04230 PF00005 ABC transporter LQF09_04235 PF02405 Permease MlaE LQF09_04240 PF02470 MlaD protein LQF09_04260 PF00005 ABC transporter LQF09_04265 PF01061 ABC-2 type transporter LQF09_04270 PF01722 BolA-like protein LQF09_04275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQF09_04280 PF01272 Transcription elongation factor, GreA/GreB, C-term LQF09_04280 PF14760 Rnk N-terminus LQF09_04285 PF01634 ATP phosphoribosyltransferase LQF09_04290 PF00815 Histidinol dehydrogenase LQF09_04295 PF00155 Aminotransferase class I and II LQF09_04300 PF00475 Imidazoleglycerol-phosphate dehydratase LQF09_04305 PF00117 Glutamine amidotransferase class-I LQF09_04310 PF00977 Histidine biosynthesis protein LQF09_04315 PF00977 Histidine biosynthesis protein LQF09_04320 PF01502 Phosphoribosyl-AMP cyclohydrolase LQF09_04325 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LQF09_04335 PF02416 mttA/Hcf106 family LQF09_04340 PF02416 mttA/Hcf106 family LQF09_04345 PF00902 Sec-independent protein translocase protein (TatC) LQF09_04350 PF13180 PDZ domain LQF09_04350 PF17820 PDZ domain LQF09_04355 PF01784 NIF3 (NGG1p interacting factor 3) LQF09_04370 PF08442 ATP-grasp domain LQF09_04370 PF00549 CoA-ligase LQF09_04375 PF02629 CoA binding domain LQF09_04375 PF00549 CoA-ligase LQF09_04380 PF00498 FHA domain LQF09_04385 PF00753 Metallo-beta-lactamase superfamily LQF09_04385 PF12706 Beta-lactamase superfamily domain LQF09_04390 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQF09_04390 PF00437 Type II/IV secretion system protein LQF09_04395 PF00834 Ribulose-phosphate 3 epimerase family LQF09_04400 PF13419 Haloacid dehalogenase-like hydrolase LQF09_04405 PF04715 Anthranilate synthase component I, N terminal region LQF09_04405 PF00425 chorismate binding enzyme LQF09_04410 PF00117 Glutamine amidotransferase class-I LQF09_04415 PF02885 Glycosyl transferase family, helical bundle domain LQF09_04415 PF00591 Glycosyl transferase family, a/b domain LQF09_04420 PF00218 Indole-3-glycerol phosphate synthase LQF09_04430 PF01625 Peptide methionine sulfoxide reductase LQF09_04435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQF09_04440 PF01037 Lrp/AsnC ligand binding domain LQF09_04440 PF13404 AsnC-type helix-turn-helix domain LQF09_04445 PF00209 Sodium:neurotransmitter symporter family LQF09_04455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LQF09_04455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LQF09_04475 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LQF09_04475 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LQF09_04480 PF00115 Cytochrome C and Quinol oxidase polypeptide I LQF09_04485 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LQF09_04490 PF00510 Cytochrome c oxidase subunit III LQF09_04515 PF01040 UbiA prenyltransferase family LQF09_04520 PF00271 Helicase conserved C-terminal domain LQF09_04520 PF00570 HRDC domain LQF09_04520 PF09382 RQC domain LQF09_04520 PF16124 RecQ zinc-binding LQF09_04520 PF00270 DEAD/DEAH box helicase LQF09_04540 PF02649 Type I GTP cyclohydrolase folE2 LQF09_04575 PF00106 short chain dehydrogenase LQF09_04585 PF02630 SCO1/SenC LQF09_04590 PF04545 Sigma-70, region 4 LQF09_04590 PF00140 Sigma-70 factor, region 1.2 LQF09_04590 PF04542 Sigma-70 region 2 LQF09_04630 PF13609 Gram-negative porin LQF09_04660 PF01510 N-acetylmuramoyl-L-alanine amidase LQF09_04665 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LQF09_04665 PF01464 Transglycosylase SLT domain LQF09_04670 PF00155 Aminotransferase class I and II LQF09_04675 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LQF09_04675 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LQF09_04680 PF01515 Phosphate acetyl/butaryl transferase LQF09_04680 PF00390 Malic enzyme, N-terminal domain LQF09_04680 PF03949 Malic enzyme, NAD binding domain LQF09_04690 PF00768 D-alanyl-D-alanine carboxypeptidase LQF09_04695 PF09339 IclR helix-turn-helix domain LQF09_04695 PF01614 Bacterial transcriptional regulator LQF09_04700 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQF09_04700 PF00361 Proton-conducting membrane transporter LQF09_04700 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LQF09_04700 PF13244 Domain of unknown function (DUF4040) LQF09_04705 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LQF09_04710 PF00361 Proton-conducting membrane transporter LQF09_04715 PF01899 Na+/H+ ion antiporter subunit LQF09_04720 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LQF09_04725 PF03334 Na+/H+ antiporter subunit LQF09_04730 PF00849 RNA pseudouridylate synthase LQF09_04730 PF01479 S4 domain LQF09_04735 PF03334 Na+/H+ antiporter subunit LQF09_04740 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LQF09_04745 PF01899 Na+/H+ ion antiporter subunit LQF09_04750 PF00361 Proton-conducting membrane transporter LQF09_04755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LQF09_04760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQF09_04760 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LQF09_04760 PF13244 Domain of unknown function (DUF4040) LQF09_04760 PF00361 Proton-conducting membrane transporter LQF09_04770 PF00005 ABC transporter LQF09_04770 PF02687 FtsX-like permease family LQF09_04770 PF12704 MacB-like periplasmic core domain LQF09_04775 PF00005 ABC transporter LQF09_04775 PF02687 FtsX-like permease family LQF09_04775 PF12704 MacB-like periplasmic core domain LQF09_04780 PF02687 FtsX-like permease family LQF09_04780 PF12704 MacB-like periplasmic core domain LQF09_04780 PF00005 ABC transporter LQF09_04805 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQF09_04805 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LQF09_04810 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LQF09_04815 PF05736 OprF membrane domain LQF09_04815 PF00691 OmpA family LQF09_04820 PF00176 SNF2 family N-terminal domain LQF09_04820 PF12419 SNF2 Helicase protein LQF09_04820 PF00271 Helicase conserved C-terminal domain LQF09_04825 PF13667 ThiC-associated domain LQF09_04825 PF01964 Radical SAM ThiC family LQF09_04830 PF08543 Phosphomethylpyrimidine kinase LQF09_04845 PF00581 Rhodanese-like domain LQF09_04845 PF00899 ThiF family LQF09_04850 PF02321 Outer membrane efflux protein LQF09_04855 PF00534 Glycosyl transferases group 1 LQF09_04855 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LQF09_04860 PF01370 NAD dependent epimerase/dehydratase family LQF09_04865 PF00149 Calcineurin-like phosphoesterase LQF09_04880 PF01230 HIT domain LQF09_04885 PF00294 pfkB family carbohydrate kinase LQF09_04905 PF02785 Biotin carboxylase C-terminal domain LQF09_04905 PF00289 Biotin carboxylase, N-terminal domain LQF09_04905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQF09_04910 PF00364 Biotin-requiring enzyme LQF09_04915 PF00578 AhpC/TSA family LQF09_04925 PF08245 Mur ligase middle domain LQF09_04925 PF01225 Mur ligase family, catalytic domain LQF09_04925 PF02875 Mur ligase family, glutamate ligase domain LQF09_04930 PF04972 BON domain LQF09_04935 PF13580 SIS domain LQF09_04940 PF02021 Uncharacterised protein family UPF0102 LQF09_04945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_04950 PF01979 Amidohydrolase family LQF09_04965 PF02381 MraZ protein, putative antitoxin-like LQF09_04970 PF01795 MraW methylase family LQF09_04975 PF04999 Cell division protein FtsL LQF09_04980 PF03717 Penicillin-binding Protein dimerisation domain LQF09_04980 PF00905 Penicillin binding protein transpeptidase domain LQF09_04985 PF01225 Mur ligase family, catalytic domain LQF09_04985 PF02875 Mur ligase family, glutamate ligase domain LQF09_04985 PF08245 Mur ligase middle domain LQF09_04990 PF08245 Mur ligase middle domain LQF09_04990 PF01225 Mur ligase family, catalytic domain LQF09_04990 PF02875 Mur ligase family, glutamate ligase domain LQF09_04995 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LQF09_04995 PF00953 Glycosyl transferase family 4 LQF09_05000 PF08245 Mur ligase middle domain LQF09_05005 PF01098 Cell cycle protein LQF09_05010 PF04101 Glycosyltransferase family 28 C-terminal domain LQF09_05010 PF03033 Glycosyltransferase family 28 N-terminal domain LQF09_05015 PF01225 Mur ligase family, catalytic domain LQF09_05015 PF02875 Mur ligase family, glutamate ligase domain LQF09_05015 PF08245 Mur ligase middle domain LQF09_05020 PF07478 D-ala D-ala ligase C-terminus LQF09_05020 PF01820 D-ala D-ala ligase N-terminus LQF09_05025 PF03799 Cell division protein FtsQ LQF09_05025 PF08478 POTRA domain, FtsQ-type LQF09_05030 PF02491 SHS2 domain inserted in FTSA LQF09_05035 PF12327 FtsZ family, C-terminal domain LQF09_05035 PF00091 Tubulin/FtsZ family, GTPase domain LQF09_05040 PF00596 Class II Aldolase and Adducin N-terminal domain LQF09_05045 PF01008 Initiation factor 2 subunit family LQF09_05050 PF00155 Aminotransferase class I and II LQF09_05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_05060 PF00512 His Kinase A (phospho-acceptor) domain LQF09_05065 PF02954 Bacterial regulatory protein, Fis family LQF09_05065 PF00072 Response regulator receiver domain LQF09_05065 PF00158 Sigma-54 interaction domain LQF09_05070 PF00753 Metallo-beta-lactamase superfamily LQF09_05070 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LQF09_05070 PF10996 Beta-Casp domain LQF09_05080 PF12704 MacB-like periplasmic core domain LQF09_05080 PF00005 ABC transporter LQF09_05080 PF02687 FtsX-like permease family LQF09_05105 PF13614 AAA domain LQF09_05115 PF13401 AAA domain LQF09_05115 PF01471 Putative peptidoglycan binding domain LQF09_05120 PF02350 UDP-N-acetylglucosamine 2-epimerase LQF09_05125 PF01522 Polysaccharide deacetylase LQF09_05140 PF13439 Glycosyltransferase Family 4 LQF09_05140 PF00534 Glycosyl transferases group 1 LQF09_05145 PF00733 Asparagine synthase LQF09_05145 PF13537 Glutamine amidotransferase domain LQF09_05150 PF13439 Glycosyltransferase Family 4 LQF09_05155 PF13439 Glycosyltransferase Family 4 LQF09_05155 PF00534 Glycosyl transferases group 1 LQF09_05185 PF13537 Glutamine amidotransferase domain LQF09_05185 PF00733 Asparagine synthase LQF09_05195 PF03062 MBOAT, membrane-bound O-acyltransferase family LQF09_05205 PF13439 Glycosyltransferase Family 4 LQF09_05205 PF00534 Glycosyl transferases group 1 LQF09_05215 PF00535 Glycosyl transferase family 2 LQF09_05230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQF09_05240 PF00884 Sulfatase LQF09_05245 PF00535 Glycosyl transferase family 2 LQF09_05255 PF00535 Glycosyl transferase family 2 LQF09_05270 PF00535 Glycosyl transferase family 2 LQF09_05275 PF00733 Asparagine synthase LQF09_05275 PF13537 Glutamine amidotransferase domain LQF09_05280 PF14307 Glycosyltransferase WbsX LQF09_05280 PF05045 Rhamnan synthesis protein F LQF09_05295 PF00534 Glycosyl transferases group 1 LQF09_05295 PF13439 Glycosyltransferase Family 4 LQF09_05305 PF01883 Iron-sulfur cluster assembly protein LQF09_05310 PF07940 Heparinase II/III-like protein LQF09_05310 PF18675 Heparinase II C-terminal domain LQF09_05320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LQF09_05320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LQF09_05325 PF00501 AMP-binding enzyme LQF09_05325 PF13193 AMP-binding enzyme C-terminal domain LQF09_05335 PF03600 Citrate transporter LQF09_05335 PF02080 TrkA-C domain LQF09_05340 PF00459 Inositol monophosphatase family LQF09_05345 PF01507 Phosphoadenosine phosphosulfate reductase family LQF09_05350 PF00009 Elongation factor Tu GTP binding domain LQF09_05360 PF12169 DNA polymerase III subunits gamma and tau domain III LQF09_05360 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LQF09_05360 PF12170 DNA polymerase III tau subunit V interacting with alpha LQF09_05365 PF02575 YbaB/EbfC DNA-binding family LQF09_05370 PF02132 RecR protein LQF09_05370 PF13662 Toprim domain LQF09_05375 PF00355 Rieske [2Fe-2S] domain LQF09_05375 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LQF09_05380 PF00033 Cytochrome b/b6/petB LQF09_05380 PF00032 Cytochrome b(C-terminal)/b6/petD LQF09_05385 PF02167 Cytochrome C1 family LQF09_05390 PF00043 Glutathione S-transferase, C-terminal domain LQF09_05390 PF02798 Glutathione S-transferase, N-terminal domain LQF09_05395 PF04386 Stringent starvation protein B LQF09_05400 PF01814 Hemerythrin HHE cation binding domain LQF09_05405 PF01266 FAD dependent oxidoreductase LQF09_05410 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LQF09_05420 PF03746 LamB/YcsF family LQF09_05425 PF02626 Carboxyltransferase domain, subdomain A and B LQF09_05430 PF02682 Carboxyltransferase domain, subdomain C and D LQF09_05440 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_05450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_05455 PF03315 Serine dehydratase beta chain LQF09_05455 PF03313 Serine dehydratase alpha chain LQF09_05460 PF00166 Chaperonin 10 Kd subunit LQF09_05465 PF00118 TCP-1/cpn60 chaperonin family LQF09_05470 PF00072 Response regulator receiver domain LQF09_05470 PF00486 Transcriptional regulatory protein, C terminal LQF09_05475 PF00512 His Kinase A (phospho-acceptor) domain LQF09_05475 PF08521 Two-component sensor kinase N-terminal LQF09_05475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_05485 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LQF09_05485 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LQF09_05485 PF01488 Shikimate / quinate 5-dehydrogenase LQF09_05490 PF03462 PCRF domain LQF09_05490 PF00472 RF-1 domain LQF09_05495 PF05175 Methyltransferase small domain LQF09_05495 PF17827 PrmC N-terminal domain LQF09_05500 PF00462 Glutaredoxin LQF09_05525 PF03881 Fructosamine kinase LQF09_05530 PF03793 PASTA domain LQF09_05530 PF00069 Protein kinase domain LQF09_05535 PF14698 Argininosuccinate lyase C-terminal LQF09_05535 PF00206 Lyase LQF09_05540 PF06580 Histidine kinase LQF09_05540 PF07694 5TMR of 5TMR-LYT LQF09_05540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_05545 PF04397 LytTr DNA-binding domain LQF09_05545 PF00072 Response regulator receiver domain LQF09_05550 PF00311 Phosphoenolpyruvate carboxylase LQF09_05555 PF03900 Porphobilinogen deaminase, C-terminal domain LQF09_05555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LQF09_05560 PF02602 Uroporphyrinogen-III synthase HemD LQF09_05570 PF01218 Coproporphyrinogen III oxidase LQF09_05575 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LQF09_05575 PF02843 Phosphoribosylglycinamide synthetase, C domain LQF09_05575 PF02844 Phosphoribosylglycinamide synthetase, N domain LQF09_05580 PF01808 AICARFT/IMPCHase bienzyme LQF09_05580 PF02142 MGS-like domain LQF09_05585 PF02954 Bacterial regulatory protein, Fis family LQF09_05590 PF01207 Dihydrouridine synthase (Dus) LQF09_05595 PF01053 Cys/Met metabolism PLP-dependent enzyme LQF09_05600 PF09383 NIL domain LQF09_05600 PF00005 ABC transporter LQF09_05605 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_05610 PF03180 NLPA lipoprotein LQF09_05615 PF01494 FAD binding domain LQF09_05620 PF05195 Aminopeptidase P, N-terminal domain LQF09_05620 PF00557 Metallopeptidase family M24 LQF09_05625 PF00483 Nucleotidyl transferase LQF09_05630 PF01636 Phosphotransferase enzyme family LQF09_05635 PF03968 OstA-like protein LQF09_05635 PF04453 LPS transport system D LQF09_05640 PF09312 SurA N-terminal domain LQF09_05640 PF00639 PPIC-type PPIASE domain LQF09_05645 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LQF09_05650 PF00398 Ribosomal RNA adenine dimethylase LQF09_05670 PF01432 Peptidase family M3 LQF09_05680 PF01259 SAICAR synthetase LQF09_05710 PF03707 Bacterial signalling protein N terminal repeat LQF09_05710 PF00990 Diguanylate cyclase, GGDEF domain LQF09_05710 PF00563 EAL domain LQF09_05720 PF00162 Phosphoglycerate kinase LQF09_05725 PF00485 Phosphoribulokinase / Uridine kinase family LQF09_05730 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LQF09_05735 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_05735 PF17866 AAA lid domain LQF09_05740 PF00101 Ribulose bisphosphate carboxylase, small chain LQF09_05745 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LQF09_05745 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LQF09_05750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_05750 PF03466 LysR substrate binding domain LQF09_05755 PF01116 Fructose-bisphosphate aldolase class-II LQF09_05760 PF00224 Pyruvate kinase, barrel domain LQF09_05760 PF02887 Pyruvate kinase, alpha/beta domain LQF09_05765 PF00162 Phosphoglycerate kinase LQF09_05770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LQF09_05770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LQF09_05775 PF02779 Transketolase, pyrimidine binding domain LQF09_05775 PF00456 Transketolase, thiamine diphosphate binding domain LQF09_05775 PF02780 Transketolase, C-terminal domain LQF09_05780 PF00672 HAMP domain LQF09_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_05785 PF00485 Phosphoribulokinase / Uridine kinase family LQF09_05790 PF00459 Inositol monophosphatase family LQF09_05795 PF04452 RNA methyltransferase LQF09_05800 PF03976 Polyphosphate kinase 2 (PPK2) LQF09_05805 PF00583 Acetyltransferase (GNAT) family LQF09_05805 PF13380 CoA binding domain LQF09_05805 PF13607 Succinyl-CoA ligase like flavodoxin domain LQF09_05810 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_05810 PF00175 Oxidoreductase NAD-binding domain LQF09_05810 PF00970 Oxidoreductase FAD-binding domain LQF09_05815 PF01883 Iron-sulfur cluster assembly protein LQF09_05820 PF05138 Phenylacetic acid catabolic protein LQF09_05825 PF06243 Phenylacetic acid degradation B LQF09_05830 PF05138 Phenylacetic acid catabolic protein LQF09_05835 PF00378 Enoyl-CoA hydratase/isomerase LQF09_05840 PF00108 Thiolase, N-terminal domain LQF09_05840 PF02803 Thiolase, C-terminal domain LQF09_05845 PF14535 AMP-binding enzyme C-terminal domain LQF09_05845 PF00501 AMP-binding enzyme LQF09_05850 PF03061 Thioesterase superfamily LQF09_05855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQF09_05855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQF09_05855 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LQF09_05860 PF00378 Enoyl-CoA hydratase/isomerase LQF09_05870 PF07848 PaaX-like protein LQF09_05870 PF08223 PaaX-like protein C-terminal domain LQF09_05875 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_05885 PF13458 Periplasmic binding protein LQF09_05895 PF00005 ABC transporter LQF09_05895 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_05900 PF00005 ABC transporter LQF09_05910 PF00583 Acetyltransferase (GNAT) family LQF09_05910 PF00696 Amino acid kinase family LQF09_05915 PF00563 EAL domain LQF09_05915 PF00990 Diguanylate cyclase, GGDEF domain LQF09_05915 PF05231 MASE1 LQF09_05915 PF08447 PAS fold LQF09_05915 PF08448 PAS fold LQF09_05915 PF13426 PAS domain LQF09_05920 PF04362 Bacterial Fe(2+) trafficking LQF09_05925 PF01895 PhoU domain LQF09_05930 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LQF09_05935 PF03454 MoeA C-terminal region (domain IV) LQF09_05935 PF03453 MoeA N-terminal region (domain I and II) LQF09_05935 PF00994 Probable molybdopterin binding domain LQF09_05940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_05945 PF01926 50S ribosome-binding GTPase LQF09_05950 PF00490 Delta-aminolevulinic acid dehydratase LQF09_05965 PF08241 Methyltransferase domain LQF09_05970 PF00156 Phosphoribosyl transferase domain LQF09_05975 PF00588 SpoU rRNA Methylase family LQF09_05980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LQF09_05980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LQF09_05990 PF02556 Preprotein translocase subunit SecB LQF09_05995 PF00462 Glutaredoxin LQF09_06000 PF00581 Rhodanese-like domain LQF09_06010 PF01551 Peptidase family M23 LQF09_06015 PF13180 PDZ domain LQF09_06015 PF03572 Peptidase family S41 LQF09_06025 PF00899 ThiF family LQF09_06030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQF09_06030 PF01872 RibD C-terminal domain LQF09_06035 PF03477 ATP cone domain LQF09_06040 PF00464 Serine hydroxymethyltransferase LQF09_06045 PF00300 Histidine phosphatase superfamily (branch 1) LQF09_06050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_06060 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_06065 PF01523 Putative modulator of DNA gyrase LQF09_06070 PF04751 Protein of unknown function (DUF615) LQF09_06075 PF00994 Probable molybdopterin binding domain LQF09_06080 PF05175 Methyltransferase small domain LQF09_06085 PF01794 Ferric reductase like transmembrane component LQF09_06090 PF00174 Oxidoreductase molybdopterin binding domain LQF09_06095 PF00793 DAHP synthetase I family LQF09_06100 PF00817 impB/mucB/samB family LQF09_06100 PF11799 impB/mucB/samB family C-terminal domain LQF09_06105 PF01923 Cobalamin adenosyltransferase LQF09_06120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQF09_06120 PF02272 DHHA1 domain LQF09_06120 PF01411 tRNA synthetases class II (A) LQF09_06125 PF13614 AAA domain LQF09_06130 PF03949 Malic enzyme, NAD binding domain LQF09_06130 PF00390 Malic enzyme, N-terminal domain LQF09_06130 PF01515 Phosphate acetyl/butaryl transferase LQF09_06140 PF00107 Zinc-binding dehydrogenase LQF09_06140 PF08240 Alcohol dehydrogenase GroES-like domain LQF09_06145 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQF09_06145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQF09_06145 PF14579 Helix-hairpin-helix motif LQF09_06145 PF02811 PHP domain LQF09_06145 PF01336 OB-fold nucleic acid binding domain LQF09_06150 PF01740 STAS domain LQF09_06150 PF00916 Sulfate permease family LQF09_06155 PF09334 tRNA synthetases class I (M) LQF09_06155 PF01588 Putative tRNA binding domain LQF09_06160 PF00691 OmpA family LQF09_06160 PF04972 BON domain LQF09_06165 PF10609 NUBPL iron-transfer P-loop NTPase LQF09_06170 PF00692 dUTPase LQF09_06175 PF01276 Orn/Lys/Arg decarboxylase, major domain LQF09_06175 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LQF09_06175 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LQF09_06180 PF00186 Dihydrofolate reductase LQF09_06185 PF00303 Thymidylate synthase LQF09_06220 PF01575 MaoC like domain LQF09_06225 PF02397 Bacterial sugar transferase LQF09_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_06230 PF00512 His Kinase A (phospho-acceptor) domain LQF09_06230 PF02743 Cache domain LQF09_06235 PF02954 Bacterial regulatory protein, Fis family LQF09_06235 PF00072 Response regulator receiver domain LQF09_06235 PF00158 Sigma-54 interaction domain LQF09_06245 PF01551 Peptidase family M23 LQF09_06245 PF10145 Phage-related minor tail protein LQF09_06245 PF01464 Transglycosylase SLT domain LQF09_06255 PF13419 Haloacid dehalogenase-like hydrolase LQF09_06270 PF00005 ABC transporter LQF09_06270 PF16326 ABC transporter C-terminal domain LQF09_06270 PF12848 ABC transporter LQF09_06280 PF04011 LemA family LQF09_06290 PF00107 Zinc-binding dehydrogenase LQF09_06295 PF00072 Response regulator receiver domain LQF09_06295 PF01627 Hpt domain LQF09_06295 PF01584 CheW-like domain LQF09_06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_06300 PF16177 Acetyl-coenzyme A synthetase N-terminus LQF09_06300 PF00501 AMP-binding enzyme LQF09_06300 PF13193 AMP-binding enzyme C-terminal domain LQF09_06315 PF02687 FtsX-like permease family LQF09_06315 PF12704 MacB-like periplasmic core domain LQF09_06320 PF00899 ThiF family LQF09_06345 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LQF09_06350 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LQF09_06355 PF01472 PUA domain LQF09_06355 PF00696 Amino acid kinase family LQF09_06360 PF01926 50S ribosome-binding GTPase LQF09_06360 PF01018 GTP1/OBG LQF09_06365 PF01016 Ribosomal L27 protein LQF09_06370 PF00829 Ribosomal prokaryotic L21 protein LQF09_06375 PF01740 STAS domain LQF09_06375 PF00916 Sulfate permease family LQF09_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_06380 PF03466 LysR substrate binding domain LQF09_06385 PF02913 FAD linked oxidases, C-terminal domain LQF09_06385 PF01565 FAD binding domain LQF09_06390 PF01565 FAD binding domain LQF09_06395 PF02754 Cysteine-rich domain LQF09_06395 PF13183 4Fe-4S dicluster domain LQF09_06405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LQF09_06405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LQF09_06410 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LQF09_06415 PF02233 NAD(P) transhydrogenase beta subunit LQF09_06425 PF00563 EAL domain LQF09_06425 PF00990 Diguanylate cyclase, GGDEF domain LQF09_06425 PF08447 PAS fold LQF09_06425 PF08448 PAS fold LQF09_06430 PF00271 Helicase conserved C-terminal domain LQF09_06430 PF00270 DEAD/DEAH box helicase LQF09_06435 PF01728 FtsJ-like methyltransferase LQF09_06435 PF18125 RlmM ferredoxin-like domain LQF09_06440 PF00248 Aldo/keto reductase family LQF09_06450 PF13416 Bacterial extracellular solute-binding protein LQF09_06455 PF00348 Polyprenyl synthetase LQF09_06525 PF00593 TonB dependent receptor LQF09_06525 PF07715 TonB-dependent Receptor Plug Domain LQF09_06535 PF00512 His Kinase A (phospho-acceptor) domain LQF09_06535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQF09_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_06535 PF01627 Hpt domain LQF09_06535 PF00072 Response regulator receiver domain LQF09_06535 PF00672 HAMP domain LQF09_06540 PF00072 Response regulator receiver domain LQF09_06540 PF00990 Diguanylate cyclase, GGDEF domain LQF09_06545 PF00171 Aldehyde dehydrogenase family LQF09_06550 PF02558 Ketopantoate reductase PanE/ApbA LQF09_06550 PF08546 Ketopantoate reductase PanE/ApbA C terminal LQF09_06560 PF00171 Aldehyde dehydrogenase family LQF09_06570 PF02954 Bacterial regulatory protein, Fis family LQF09_06570 PF01590 GAF domain LQF09_06570 PF00158 Sigma-54 interaction domain LQF09_06575 PF01435 Peptidase family M48 LQF09_06580 PF04011 LemA family LQF09_06585 PF00593 TonB dependent receptor LQF09_06585 PF07715 TonB-dependent Receptor Plug Domain LQF09_06590 PF00561 alpha/beta hydrolase fold LQF09_06605 PF03466 LysR substrate binding domain LQF09_06605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_06610 PF08042 PqqA family LQF09_06615 PF12706 Beta-lactamase superfamily domain LQF09_06620 PF03070 TENA/THI-4/PQQC family LQF09_06625 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LQF09_06630 PF04055 Radical SAM superfamily LQF09_06630 PF13186 Iron-sulfur cluster-binding domain LQF09_06640 PF00196 Bacterial regulatory proteins, luxR family LQF09_06640 PF00072 Response regulator receiver domain LQF09_06645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_06645 PF07730 Histidine kinase LQF09_06645 PF05231 MASE1 LQF09_06665 PF00005 ABC transporter LQF09_06670 PF00005 ABC transporter LQF09_06735 PF13360 PQQ-like domain LQF09_06740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LQF09_06740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQF09_06740 PF02142 MGS-like domain LQF09_06755 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal LQF09_06760 PF02289 Cyclohydrolase (MCH) LQF09_06765 PF08443 RimK-like ATP-grasp domain LQF09_06765 PF18030 RimK PreATP-grasp domain LQF09_06770 PF08714 Formaldehyde-activating enzyme (Fae) LQF09_06795 PF04476 4-HFC-P synthase LQF09_06845 PF13808 DDE_Tnp_1-associated LQF09_06845 PF01609 Transposase DDE domain LQF09_06880 PF01609 Transposase DDE domain LQF09_06880 PF13808 DDE_Tnp_1-associated LQF09_06900 PF07969 Amidohydrolase family LQF09_06905 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase LQF09_06905 PF02741 FTR, proximal lobe LQF09_06920 PF04715 Anthranilate synthase component I, N terminal region LQF09_06920 PF00117 Glutamine amidotransferase class-I LQF09_06920 PF00425 chorismate binding enzyme LQF09_06930 PF08479 POTRA domain, ShlB-type LQF09_06930 PF17287 POTRA domain LQF09_06930 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LQF09_06940 PF12838 4Fe-4S dicluster domain LQF09_06940 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQF09_06940 PF01568 Molydopterin dinucleotide binding domain LQF09_06940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQF09_06940 PF00384 Molybdopterin oxidoreductase LQF09_06945 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQF09_06945 PF10531 SLBB domain LQF09_06945 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQF09_06955 PF01590 GAF domain LQF09_06955 PF00158 Sigma-54 interaction domain LQF09_06955 PF02954 Bacterial regulatory protein, Fis family LQF09_06985 PF01011 PQQ enzyme repeat LQF09_06985 PF13360 PQQ-like domain LQF09_07000 PF01011 PQQ enzyme repeat LQF09_07000 PF13360 PQQ-like domain LQF09_07005 PF05231 MASE1 LQF09_07005 PF07730 Histidine kinase LQF09_07005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_07010 PF00196 Bacterial regulatory proteins, luxR family LQF09_07010 PF00072 Response regulator receiver domain LQF09_07025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_07030 PF00158 Sigma-54 interaction domain LQF09_07030 PF02954 Bacterial regulatory protein, Fis family LQF09_07030 PF01590 GAF domain LQF09_07040 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain LQF09_07040 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 LQF09_07045 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_07045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQF09_07045 PF04324 BFD-like [2Fe-2S] binding domain LQF09_07045 PF18267 Rubredoxin NAD+ reductase C-terminal domain LQF09_07060 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_07065 PF00005 ABC transporter LQF09_07080 PF00158 Sigma-54 interaction domain LQF09_07080 PF02954 Bacterial regulatory protein, Fis family LQF09_07080 PF00072 Response regulator receiver domain LQF09_07105 PF00072 Response regulator receiver domain LQF09_07110 PF02954 Bacterial regulatory protein, Fis family LQF09_07110 PF00072 Response regulator receiver domain LQF09_07110 PF00158 Sigma-54 interaction domain LQF09_07115 PF01967 MoaC family LQF09_07120 PF01435 Peptidase family M48 LQF09_07125 PF01206 Sulfurtransferase TusA LQF09_07130 PF08264 Anticodon-binding domain of tRNA LQF09_07130 PF00133 tRNA synthetases class I (I, L, M and V) LQF09_07130 PF10458 Valyl tRNA synthetase tRNA binding arm LQF09_07145 PF02789 Cytosol aminopeptidase family, N-terminal domain LQF09_07145 PF00883 Cytosol aminopeptidase family, catalytic domain LQF09_07150 PF03739 Lipopolysaccharide export system permease LptF/LptG LQF09_07155 PF03739 Lipopolysaccharide export system permease LptF/LptG LQF09_07160 PF01245 Ribosomal protein L19 LQF09_07165 PF01746 tRNA (Guanine-1)-methyltransferase LQF09_07170 PF05239 PRC-barrel domain LQF09_07170 PF01782 RimM N-terminal domain LQF09_07175 PF00886 Ribosomal protein S16 LQF09_07185 PF03358 NADPH-dependent FMN reductase LQF09_07195 PF00682 HMGL-like LQF09_07195 PF08502 LeuA allosteric (dimerisation) domain LQF09_07200 PF01066 CDP-alcohol phosphatidyltransferase LQF09_07205 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LQF09_07205 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LQF09_07210 PF10369 Small subunit of acetolactate synthase LQF09_07215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_07215 PF00205 Thiamine pyrophosphate enzyme, central domain LQF09_07215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQF09_07225 PF01433 Peptidase family M1 domain LQF09_07225 PF11940 Domain of unknown function (DUF3458) Ig-like fold LQF09_07225 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LQF09_07230 PF00478 IMP dehydrogenase / GMP reductase domain LQF09_07230 PF00571 CBS domain LQF09_07235 PF02569 Pantoate-beta-alanine ligase LQF09_07240 PF02548 Ketopantoate hydroxymethyltransferase LQF09_07245 PF01712 Deoxynucleoside kinase LQF09_07255 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LQF09_07260 PF01743 Poly A polymerase head domain LQF09_07260 PF12626 Polymerase A arginine-rich C-terminus LQF09_07260 PF12627 Probable RNA and SrmB- binding site of polymerase A LQF09_07270 PF00308 Bacterial dnaA protein LQF09_07270 PF08299 Bacterial dnaA protein helix-turn-helix LQF09_07275 PF01594 AI-2E family transporter LQF09_07280 PF00586 AIR synthase related protein, N-terminal domain LQF09_07280 PF02769 AIR synthase related protein, C-terminal domain LQF09_07290 PF00582 Universal stress protein family LQF09_07290 PF00999 Sodium/hydrogen exchanger family LQF09_07310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_07315 PF00873 AcrB/AcrD/AcrF family LQF09_07320 PF04325 Protein of unknown function (DUF465) LQF09_07335 PF13426 PAS domain LQF09_07335 PF00563 EAL domain LQF09_07335 PF00990 Diguanylate cyclase, GGDEF domain LQF09_07340 PF09335 SNARE associated Golgi protein LQF09_07345 PF08676 MutL C terminal dimerisation domain LQF09_07345 PF01119 DNA mismatch repair protein, C-terminal domain LQF09_07355 PF00551 Formyl transferase LQF09_07365 PF01189 16S rRNA methyltransferase RsmB/F LQF09_07365 PF01029 NusB family LQF09_07380 PF01242 6-pyruvoyl tetrahydropterin synthase LQF09_07410 PF02322 Cytochrome bd terminal oxidase subunit II LQF09_07415 PF01654 Cytochrome bd terminal oxidase subunit I LQF09_07425 PF00916 Sulfate permease family LQF09_07425 PF01740 STAS domain LQF09_07430 PF00753 Metallo-beta-lactamase superfamily LQF09_07450 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQF09_07450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_07450 PF00512 His Kinase A (phospho-acceptor) domain LQF09_07460 PF01274 Malate synthase LQF09_07465 PF13525 Outer membrane lipoprotein LQF09_07470 PF00849 RNA pseudouridylate synthase LQF09_07475 PF02578 Multi-copper polyphenol oxidoreductase laccase LQF09_07485 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LQF09_07490 PF00106 short chain dehydrogenase LQF09_07495 PF00106 short chain dehydrogenase LQF09_07500 PF07879 PHB/PHA accumulation regulator DNA-binding domain LQF09_07500 PF05233 PHB accumulation regulatory domain LQF09_07505 PF04055 Radical SAM superfamily LQF09_07505 PF18693 TRAM domain LQF09_07505 PF00919 Uncharacterized protein family UPF0004 LQF09_07510 PF01734 Patatin-like phospholipase LQF09_07515 PF01565 FAD binding domain LQF09_07515 PF02913 FAD linked oxidases, C-terminal domain LQF09_07550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQF09_07550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQF09_07555 PF07498 Rho termination factor, N-terminal domain LQF09_07555 PF07497 Rho termination factor, RNA-binding domain LQF09_07555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQF09_07560 PF00085 Thioredoxin LQF09_07565 PF00037 4Fe-4S binding domain LQF09_07565 PF11953 Domain of unknown function (DUF3470) LQF09_07570 PF00571 CBS domain LQF09_07570 PF01743 Poly A polymerase head domain LQF09_07570 PF02272 DHHA1 domain LQF09_07570 PF01368 DHH family LQF09_07575 PF00501 AMP-binding enzyme LQF09_07575 PF13193 AMP-binding enzyme C-terminal domain LQF09_07580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_07580 PF00205 Thiamine pyrophosphate enzyme, central domain LQF09_07580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQF09_07585 PF01842 ACT domain LQF09_07590 PF01264 Chorismate synthase LQF09_07595 PF12832 MFS_1 like family LQF09_07600 PF01435 Peptidase family M48 LQF09_07605 PF00330 Aconitase family (aconitate hydratase) LQF09_07615 PF00694 Aconitase C-terminal domain LQF09_07620 PF00180 Isocitrate/isopropylmalate dehydrogenase LQF09_07625 PF02774 Semialdehyde dehydrogenase, dimerisation domain LQF09_07625 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQF09_07640 PF01416 tRNA pseudouridine synthase LQF09_07645 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LQF09_07650 PF00291 Pyridoxal-phosphate dependent enzyme LQF09_07655 PF00290 Tryptophan synthase alpha chain LQF09_07660 PF01039 Carboxyl transferase domain LQF09_07660 PF17848 Acetyl-coA carboxylase zinc finger domain LQF09_07665 PF02875 Mur ligase family, glutamate ligase domain LQF09_07665 PF08245 Mur ligase middle domain LQF09_07670 PF05036 Sporulation related domain LQF09_07680 PF00156 Phosphoribosyl transferase domain LQF09_07685 PF01053 Cys/Met metabolism PLP-dependent enzyme LQF09_07690 PF00149 Calcineurin-like phosphoesterase LQF09_07695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LQF09_07700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LQF09_07705 PF09190 DALR domain LQF09_07705 PF01406 tRNA synthetases class I (C) catalytic domain LQF09_07710 PF00684 DnaJ central domain LQF09_07710 PF01556 DnaJ C terminal domain LQF09_07710 PF00226 DnaJ domain LQF09_07715 PF00012 Hsp70 protein LQF09_07720 PF01025 GrpE LQF09_07730 PF03989 DNA gyrase C-terminal domain, beta-propeller LQF09_07730 PF00521 DNA gyrase/topoisomerase IV, subunit A LQF09_07735 PF00266 Aminotransferase class-V LQF09_07740 PF01842 ACT domain LQF09_07740 PF00800 Prephenate dehydratase LQF09_07740 PF01817 Chorismate mutase type II LQF09_07745 PF00155 Aminotransferase class I and II LQF09_07750 PF02153 Prephenate dehydrogenase LQF09_07750 PF01842 ACT domain LQF09_07755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQF09_07760 PF00575 S1 RNA binding domain LQF09_07765 PF00216 Bacterial DNA-binding protein LQF09_07775 PF18073 Rubredoxin metal binding domain LQF09_07780 PF00291 Pyridoxal-phosphate dependent enzyme LQF09_07805 PF04226 Transglycosylase associated protein LQF09_07815 PF03129 Anticodon binding domain LQF09_07815 PF02824 TGS domain LQF09_07815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQF09_07815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQF09_07820 PF00707 Translation initiation factor IF-3, C-terminal domain LQF09_07820 PF05198 Translation initiation factor IF-3, N-terminal domain LQF09_07825 PF01632 Ribosomal protein L35 LQF09_07830 PF00453 Ribosomal protein L20 LQF09_07835 PF01409 tRNA synthetases class II core domain (F) LQF09_07835 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LQF09_07840 PF03484 tRNA synthetase B5 domain LQF09_07840 PF03147 Ferredoxin-fold anticodon binding domain LQF09_07840 PF01588 Putative tRNA binding domain LQF09_07840 PF03483 B3/4 domain LQF09_07840 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LQF09_07845 PF00216 Bacterial DNA-binding protein LQF09_07860 PF01975 Survival protein SurE LQF09_07870 PF01476 LysM domain LQF09_07870 PF01551 Peptidase family M23 LQF09_07875 PF04539 Sigma-70 region 3 LQF09_07875 PF00140 Sigma-70 factor, region 1.2 LQF09_07875 PF04542 Sigma-70 region 2 LQF09_07875 PF04545 Sigma-70, region 4 LQF09_07885 PF13406 Transglycosylase SLT domain LQF09_07890 PF11992 Domain of unknown function (DUF3488) LQF09_07890 PF01841 Transglutaminase-like superfamily LQF09_07890 PF13559 Domain of unknown function (DUF4129) LQF09_07900 PF07726 ATPase family associated with various cellular activities (AAA) LQF09_07900 PF17863 AAA lid domain LQF09_07905 PF00850 Histone deacetylase domain LQF09_07910 PF00701 Dihydrodipicolinate synthetase family LQF09_07915 PF06804 NlpB/DapX lipoprotein LQF09_07925 PF05958 tRNA (Uracil-5-)-methyltransferase LQF09_07925 PF01938 TRAM domain LQF09_07930 PF00202 Aminotransferase class-III LQF09_07935 PF00155 Aminotransferase class I and II LQF09_07945 PF06968 Biotin and Thiamin Synthesis associated domain LQF09_07945 PF04055 Radical SAM superfamily LQF09_07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_07955 PF00512 His Kinase A (phospho-acceptor) domain LQF09_07955 PF00989 PAS fold LQF09_07955 PF13188 PAS domain LQF09_07960 PF00072 Response regulator receiver domain LQF09_07965 PF03707 Bacterial signalling protein N terminal repeat LQF09_07965 PF00563 EAL domain LQF09_07965 PF00990 Diguanylate cyclase, GGDEF domain LQF09_07970 PF00849 RNA pseudouridylate synthase LQF09_07980 PF01312 FlhB HrpN YscU SpaS Family LQF09_07985 PF00771 FHIPEP family LQF09_07990 PF00448 SRP54-type protein, GTPase domain LQF09_08000 PF04542 Sigma-70 region 2 LQF09_08000 PF04539 Sigma-70 region 3 LQF09_08000 PF04545 Sigma-70, region 4 LQF09_08005 PF01618 MotA/TolQ/ExbB proton channel family LQF09_08010 PF00691 OmpA family LQF09_08010 PF13677 Membrane MotB of proton-channel complex MotA/MotB LQF09_08020 PF17202 Single cache domain 3 LQF09_08020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_08020 PF00672 HAMP domain LQF09_08025 PF00521 DNA gyrase/topoisomerase IV, subunit A LQF09_08040 PF01751 Toprim domain LQF09_08040 PF00204 DNA gyrase B LQF09_08040 PF00986 DNA gyrase B subunit, carboxyl terminus LQF09_08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_08050 PF04316 Anti-sigma-28 factor, FlgM LQF09_08055 PF13144 Chaperone for flagella basal body P-ring formation LQF09_08055 PF17656 FlgA N-terminal domain LQF09_08060 PF00460 Flagella basal body rod protein LQF09_08065 PF00460 Flagella basal body rod protein LQF09_08065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQF09_08070 PF13861 FlgD Tudor-like domain LQF09_08070 PF03963 Flagellar hook capping protein - N-terminal region LQF09_08070 PF13860 FlgD Ig-like domain LQF09_08075 PF07559 Flagellar basal body protein FlaE LQF09_08075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQF09_08075 PF00460 Flagella basal body rod protein LQF09_08080 PF00460 Flagella basal body rod protein LQF09_08080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQF09_08085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQF09_08085 PF00460 Flagella basal body rod protein LQF09_08090 PF02107 Flagellar L-ring protein LQF09_08095 PF02119 Flagellar P-ring protein LQF09_08100 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LQF09_08100 PF10135 Rod binding protein LQF09_08105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQF09_08105 PF00460 Flagella basal body rod protein LQF09_08110 PF00669 Bacterial flagellin N-terminal helical region LQF09_08120 PF01311 Bacterial export proteins, family 1 LQF09_08125 PF01313 Bacterial export proteins, family 3 LQF09_08130 PF00813 FliP family LQF09_08135 PF04347 Flagellar biosynthesis protein, FliO LQF09_08140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LQF09_08140 PF16973 Flagellar motor switch protein FliN N-terminal LQF09_08145 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LQF09_08145 PF02154 Flagellar motor switch protein FliM LQF09_08165 PF18269 T3SS EscN ATPase C-terminal domain LQF09_08165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQF09_08175 PF14842 FliG N-terminal domain LQF09_08175 PF14841 FliG middle domain LQF09_08175 PF01706 FliG C-terminal domain LQF09_08180 PF08345 Flagellar M-ring protein C-terminal LQF09_08180 PF01514 Secretory protein of YscJ/FliF family LQF09_08185 PF13188 PAS domain LQF09_08185 PF00512 His Kinase A (phospho-acceptor) domain LQF09_08185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_08190 PF00072 Response regulator receiver domain LQF09_08190 PF00158 Sigma-54 interaction domain LQF09_08190 PF02954 Bacterial regulatory protein, Fis family LQF09_08195 PF02049 Flagellar hook-basal body complex protein FliE LQF09_08200 PF13356 Arm DNA-binding domain LQF09_08200 PF14659 Phage integrase, N-terminal SAM-like domain LQF09_08200 PF00589 Phage integrase family LQF09_08255 PF12728 Helix-turn-helix domain LQF09_08260 PF00145 C-5 cytosine-specific DNA methylase LQF09_08265 PF03852 DNA mismatch endonuclease Vsr LQF09_08270 PF08676 MutL C terminal dimerisation domain LQF09_08270 PF01119 DNA mismatch repair protein, C-terminal domain LQF09_08305 PF00512 His Kinase A (phospho-acceptor) domain LQF09_08305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_08350 PF07715 TonB-dependent Receptor Plug Domain LQF09_08350 PF00593 TonB dependent receptor LQF09_08355 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LQF09_08355 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LQF09_08360 PF03328 HpcH/HpaI aldolase/citrate lyase family LQF09_08365 PF06276 Ferric iron reductase FhuF-like transporter LQF09_08365 PF04183 IucA / IucC family LQF09_08370 PF04183 IucA / IucC family LQF09_08370 PF06276 Ferric iron reductase FhuF-like transporter LQF09_08375 PF07690 Major Facilitator Superfamily LQF09_08375 PF00083 Sugar (and other) transporter LQF09_08380 PF06276 Ferric iron reductase FhuF-like transporter LQF09_08380 PF04183 IucA / IucC family LQF09_08385 PF02423 Ornithine cyclodeaminase/mu-crystallin family LQF09_08390 PF00291 Pyridoxal-phosphate dependent enzyme LQF09_08410 PF13443 Cro/C1-type HTH DNA-binding domain LQF09_08425 PF07715 TonB-dependent Receptor Plug Domain LQF09_08425 PF00593 TonB dependent receptor LQF09_08430 PF05175 Methyltransferase small domain LQF09_08430 PF17827 PrmC N-terminal domain LQF09_08445 PF00107 Zinc-binding dehydrogenase LQF09_08445 PF08240 Alcohol dehydrogenase GroES-like domain LQF09_08450 PF09190 DALR domain LQF09_08450 PF01406 tRNA synthetases class I (C) catalytic domain LQF09_08455 PF01502 Phosphoribosyl-AMP cyclohydrolase LQF09_08460 PF01475 Ferric uptake regulator family LQF09_08465 PF00464 Serine hydroxymethyltransferase LQF09_08470 PF00202 Aminotransferase class-III LQF09_08475 PF00117 Glutamine amidotransferase class-I LQF09_08475 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LQF09_08480 PF01168 Alanine racemase, N-terminal domain LQF09_08485 PF03594 Benzoate membrane transport protein LQF09_08490 PF00155 Aminotransferase class I and II LQF09_08490 PF00392 Bacterial regulatory proteins, gntR family LQF09_08495 PF10415 Fumarase C C-terminus LQF09_08495 PF00206 Lyase LQF09_08500 PF01545 Cation efflux family LQF09_08505 PF07317 Flagellar regulator YcgR LQF09_08505 PF07238 PilZ domain LQF09_08510 PF07317 Flagellar regulator YcgR LQF09_08510 PF07238 PilZ domain LQF09_08515 PF01312 FlhB HrpN YscU SpaS Family LQF09_08530 PF02561 Flagellar protein FliS LQF09_08535 PF07195 Flagellar hook-associated protein 2 C-terminus LQF09_08535 PF02465 Flagellar hook-associated protein 2 N-terminus LQF09_08535 PF07196 Flagellin hook IN motif LQF09_08540 PF03646 FlaG protein LQF09_08545 PF00669 Bacterial flagellin N-terminal helical region LQF09_08545 PF07196 Flagellin hook IN motif LQF09_08545 PF00700 Bacterial flagellin C-terminal helical region LQF09_08555 PF00535 Glycosyl transferase family 2 LQF09_08570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQF09_08575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQF09_08590 PF00669 Bacterial flagellin N-terminal helical region LQF09_08590 PF00700 Bacterial flagellin C-terminal helical region LQF09_08600 PF00361 Proton-conducting membrane transporter LQF09_08605 PF00361 Proton-conducting membrane transporter LQF09_08610 PF00361 Proton-conducting membrane transporter LQF09_08615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LQF09_08620 PF13244 Domain of unknown function (DUF4040) LQF09_08620 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LQF09_08620 PF00361 Proton-conducting membrane transporter LQF09_08620 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQF09_08630 PF03334 Na+/H+ antiporter subunit LQF09_08650 PF00080 Copper/zinc superoxide dismutase (SODC) LQF09_08660 PF03009 Glycerophosphoryl diester phosphodiesterase family LQF09_08665 PF13180 PDZ domain LQF09_08675 PF13406 Transglycosylase SLT domain LQF09_08680 PF07729 FCD domain LQF09_08680 PF00392 Bacterial regulatory proteins, gntR family LQF09_08685 PF02652 L-lactate permease LQF09_08690 PF02754 Cysteine-rich domain LQF09_08695 PF11870 Domain of unknown function (DUF3390) LQF09_08695 PF13183 4Fe-4S dicluster domain LQF09_08695 PF02589 LUD domain LQF09_08700 PF02589 LUD domain LQF09_08710 PF00691 OmpA family LQF09_08715 PF01979 Amidohydrolase family LQF09_08720 PF00069 Protein kinase domain LQF09_08720 PF03793 PASTA domain LQF09_08725 PF00762 Ferrochelatase LQF09_08730 PF01628 HrcA protein C terminal domain LQF09_08730 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LQF09_08735 PF01513 ATP-NAD kinase LQF09_08740 PF02463 RecF/RecN/SMC N terminal domain LQF09_08750 PF01475 Ferric uptake regulator family LQF09_08755 PF04355 SmpA / OmlA family LQF09_08760 PF05173 Dihydrodipicolinate reductase, C-terminus LQF09_08760 PF01113 Dihydrodipicolinate reductase, N-terminus LQF09_08765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQF09_08765 PF00072 Response regulator receiver domain LQF09_08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_08765 PF00672 HAMP domain LQF09_08765 PF01627 Hpt domain LQF09_08765 PF00512 His Kinase A (phospho-acceptor) domain LQF09_08770 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LQF09_08770 PF00117 Glutamine amidotransferase class-I LQF09_08775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQF09_08775 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LQF09_08775 PF02142 MGS-like domain LQF09_08780 PF03449 Transcription elongation factor, N-terminal LQF09_08780 PF01272 Transcription elongation factor, GreA/GreB, C-term LQF09_08785 PF01985 CRS1 / YhbY (CRM) domain LQF09_08790 PF01728 FtsJ-like methyltransferase LQF09_08795 PF01434 Peptidase family M41 LQF09_08795 PF17862 AAA+ lid domain LQF09_08795 PF06480 FtsH Extracellular LQF09_08795 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_08800 PF00809 Pterin binding enzyme LQF09_08805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQF09_08805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQF09_08805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQF09_08805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQF09_08815 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_08820 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_08825 PF00005 ABC transporter LQF09_08835 PF00248 Aldo/keto reductase family LQF09_08840 PF18364 Molybdopterin oxidoreductase N-terminal domain LQF09_08840 PF00384 Molybdopterin oxidoreductase LQF09_08840 PF01568 Molydopterin dinucleotide binding domain LQF09_08845 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LQF09_08850 PF17149 Periplasmic sensor domain found in signal transduction proteins LQF09_08850 PF00672 HAMP domain LQF09_08850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_08850 PF00512 His Kinase A (phospho-acceptor) domain LQF09_08850 PF01627 Hpt domain LQF09_08850 PF00072 Response regulator receiver domain LQF09_08855 PF03741 Integral membrane protein TerC family LQF09_08860 PF00072 Response regulator receiver domain LQF09_08860 PF00486 Transcriptional regulatory protein, C terminal LQF09_08865 PF00342 Phosphoglucose isomerase LQF09_08870 PF02798 Glutathione S-transferase, N-terminal domain LQF09_08895 PF00155 Aminotransferase class I and II LQF09_08900 PF04542 Sigma-70 region 2 LQF09_08900 PF08281 Sigma-70, region 4 LQF09_08910 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_08920 PF00535 Glycosyl transferase family 2 LQF09_08930 PF00403 Heavy-metal-associated domain LQF09_08930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_08930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQF09_08945 PF01740 STAS domain LQF09_08945 PF00916 Sulfate permease family LQF09_08965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LQF09_08965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LQF09_08975 PF01022 Bacterial regulatory protein, arsR family LQF09_08980 PF01758 Sodium Bile acid symporter family LQF09_08985 PF03960 ArsC family LQF09_08990 PF03358 NADPH-dependent FMN reductase LQF09_09000 PF09905 DNA-binding protein VF530 LQF09_09030 PF13291 ACT domain LQF09_09030 PF04607 Region found in RelA / SpoT proteins LQF09_09030 PF02824 TGS domain LQF09_09095 PF01883 Iron-sulfur cluster assembly protein LQF09_09100 PF01592 NifU-like N terminal domain LQF09_09105 PF00266 Aminotransferase class-V LQF09_09110 PF01458 Uncharacterized protein family (UPF0051) LQF09_09115 PF00005 ABC transporter LQF09_09120 PF01458 Uncharacterized protein family (UPF0051) LQF09_09125 PF02082 Transcriptional regulator LQF09_09135 PF00043 Glutathione S-transferase, C-terminal domain LQF09_09135 PF02798 Glutathione S-transferase, N-terminal domain LQF09_09140 PF01554 MatE LQF09_09145 PF02580 D-Tyr-tRNA(Tyr) deacylase LQF09_09150 PF01053 Cys/Met metabolism PLP-dependent enzyme LQF09_09155 PF10672 S-adenosylmethionine-dependent methyltransferase LQF09_09155 PF17785 PUA-like domain LQF09_09170 PF00155 Aminotransferase class I and II LQF09_09170 PF00392 Bacterial regulatory proteins, gntR family LQF09_09175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQF09_09180 PF00465 Iron-containing alcohol dehydrogenase LQF09_09185 PF16925 Tetracyclin repressor-like, C-terminal domain LQF09_09185 PF00440 Bacterial regulatory proteins, tetR family LQF09_09190 PF07690 Major Facilitator Superfamily LQF09_09195 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQF09_09195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQF09_09195 PF14579 Helix-hairpin-helix motif LQF09_09195 PF02811 PHP domain LQF09_09205 PF02653 Branched-chain amino acid transport system / permease component LQF09_09210 PF00005 ABC transporter LQF09_09215 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQF09_09230 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_09240 PF00072 Response regulator receiver domain LQF09_09240 PF00196 Bacterial regulatory proteins, luxR family LQF09_09245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_09245 PF07730 Histidine kinase LQF09_09250 PF01266 FAD dependent oxidoreductase LQF09_09250 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LQF09_09260 PF13847 Methyltransferase domain LQF09_09265 PF02673 Bacitracin resistance protein BacA LQF09_09270 PF01336 OB-fold nucleic acid binding domain LQF09_09270 PF00152 tRNA synthetases class II (D, K and N) LQF09_09275 PF02743 Cache domain LQF09_09275 PF00672 HAMP domain LQF09_09275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_09280 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LQF09_09285 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQF09_09285 PF07683 Cobalamin synthesis protein cobW C-terminal domain LQF09_09290 PF02514 CobN/Magnesium Chelatase LQF09_09295 PF13519 von Willebrand factor type A domain LQF09_09295 PF07728 AAA domain (dynein-related subfamily) LQF09_09295 PF17863 AAA lid domain LQF09_09310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQF09_09315 PF02570 Precorrin-8X methylmutase LQF09_09320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_09325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_09330 PF02571 Precorrin-6x reductase CbiJ/CobK LQF09_09335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_09345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_09350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_09355 PF00753 Metallo-beta-lactamase superfamily LQF09_09360 PF06470 SMC proteins Flexible Hinge Domain LQF09_09360 PF02463 RecF/RecN/SMC N terminal domain LQF09_09365 PF05958 tRNA (Uracil-5-)-methyltransferase LQF09_09385 PF00563 EAL domain LQF09_09385 PF00990 Diguanylate cyclase, GGDEF domain LQF09_09385 PF03707 Bacterial signalling protein N terminal repeat LQF09_09390 PF00364 Biotin-requiring enzyme LQF09_09390 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQF09_09390 PF02817 e3 binding domain LQF09_09395 PF02779 Transketolase, pyrimidine binding domain LQF09_09395 PF02780 Transketolase, C-terminal domain LQF09_09400 PF00676 Dehydrogenase E1 component LQF09_09405 PF01368 DHH family LQF09_09405 PF02272 DHHA1 domain LQF09_09405 PF17768 RecJ OB domain LQF09_09425 PF03797 Autotransporter beta-domain LQF09_09425 PF00657 GDSL-like Lipase/Acylhydrolase LQF09_09455 PF00005 ABC transporter LQF09_09460 PF00950 ABC 3 transport family LQF09_09475 PF01618 MotA/TolQ/ExbB proton channel family LQF09_09485 PF07715 TonB-dependent Receptor Plug Domain LQF09_09485 PF00593 TonB dependent receptor LQF09_09485 PF07660 Secretin and TonB N terminus short domain LQF09_09495 PF08281 Sigma-70, region 4 LQF09_09495 PF04542 Sigma-70 region 2 LQF09_09510 PF13005 zinc-finger binding domain of transposase IS66 LQF09_09510 PF13007 Transposase C of IS166 homeodomain LQF09_09510 PF13817 IS66 C-terminal element LQF09_09510 PF03050 Transposase IS66 family LQF09_09515 PF05717 IS66 Orf2 like protein LQF09_09520 PF13276 HTH-like domain LQF09_09520 PF01527 Transposase LQF09_09520 PF00665 Integrase core domain LQF09_09530 PF13005 zinc-finger binding domain of transposase IS66 LQF09_09530 PF13007 Transposase C of IS166 homeodomain LQF09_09530 PF13817 IS66 C-terminal element LQF09_09530 PF03050 Transposase IS66 family LQF09_09545 PF13808 DDE_Tnp_1-associated LQF09_09545 PF01609 Transposase DDE domain LQF09_09565 PF07660 Secretin and TonB N terminus short domain LQF09_09565 PF00593 TonB dependent receptor LQF09_09565 PF07715 TonB-dependent Receptor Plug Domain LQF09_09570 PF16220 Domain of unknown function (DUF4880) LQF09_09570 PF04773 FecR protein LQF09_09575 PF04542 Sigma-70 region 2 LQF09_09575 PF08281 Sigma-70, region 4 LQF09_09585 PF16220 Domain of unknown function (DUF4880) LQF09_09585 PF04773 FecR protein LQF09_09590 PF08281 Sigma-70, region 4 LQF09_09590 PF04542 Sigma-70 region 2 LQF09_09600 PF00127 Copper binding proteins, plastocyanin/azurin family LQF09_09615 PF07715 TonB-dependent Receptor Plug Domain LQF09_09615 PF00593 TonB dependent receptor LQF09_09640 PF13533 Biotin-lipoyl like LQF09_09645 PF00873 AcrB/AcrD/AcrF family LQF09_09650 PF00873 AcrB/AcrD/AcrF family LQF09_09670 PF03776 Septum formation topological specificity factor MinE LQF09_09675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LQF09_09680 PF05209 Septum formation inhibitor MinC, N-terminal domain LQF09_09680 PF03775 Septum formation inhibitor MinC, C-terminal domain LQF09_09685 PF01430 Hsp33 protein LQF09_09690 PF03960 ArsC family LQF09_09695 PF16921 Tex protein YqgF-like domain LQF09_09695 PF09371 Tex-like protein N-terminal domain LQF09_09695 PF00575 S1 RNA binding domain LQF09_09695 PF17674 HHH domain LQF09_09700 PF04055 Radical SAM superfamily LQF09_09700 PF08497 Radical SAM N-terminal LQF09_09700 PF11842 Domain of unknown function (DUF3362) LQF09_09705 PF03707 Bacterial signalling protein N terminal repeat LQF09_09705 PF00990 Diguanylate cyclase, GGDEF domain LQF09_09705 PF00563 EAL domain LQF09_09710 PF12704 MacB-like periplasmic core domain LQF09_09710 PF02687 FtsX-like permease family LQF09_09715 PF00005 ABC transporter LQF09_09725 PF03772 Competence protein LQF09_09725 PF00753 Metallo-beta-lactamase superfamily LQF09_09735 PF03193 RsgA GTPase LQF09_09740 PF01435 Peptidase family M48 LQF09_09745 PF00929 Exonuclease LQF09_09755 PF01197 Ribosomal protein L31 LQF09_09760 PF01207 Dihydrouridine synthase (Dus) LQF09_09770 PF03695 Uncharacterised protein family (UPF0149) LQF09_09770 PF02810 SEC-C motif LQF09_09775 PF03692 Putative zinc- or iron-chelating domain LQF09_09785 PF01266 FAD dependent oxidoreductase LQF09_09790 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQF09_09790 PF07683 Cobalamin synthesis protein cobW C-terminal domain LQF09_09820 PF00330 Aconitase family (aconitate hydratase) LQF09_09820 PF06434 Aconitate hydratase 2 N-terminus LQF09_09820 PF11791 Aconitate B N-terminal domain LQF09_09835 PF00271 Helicase conserved C-terminal domain LQF09_09835 PF04851 Type III restriction enzyme, res subunit LQF09_09845 PF01497 Periplasmic binding protein LQF09_09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_09865 PF03466 LysR substrate binding domain LQF09_09870 PF00180 Isocitrate/isopropylmalate dehydrogenase LQF09_09890 PF00296 Luciferase-like monooxygenase LQF09_09895 PF08443 RimK-like ATP-grasp domain LQF09_09895 PF18030 RimK PreATP-grasp domain LQF09_09900 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQF09_09905 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_09910 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_09915 PF00005 ABC transporter LQF09_09920 PF07690 Major Facilitator Superfamily LQF09_09925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_09925 PF03466 LysR substrate binding domain LQF09_09935 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LQF09_09935 PF00056 lactate/malate dehydrogenase, NAD binding domain LQF09_09940 PF00392 Bacterial regulatory proteins, gntR family LQF09_09940 PF07702 UTRA domain LQF09_09955 PF00890 FAD binding domain LQF09_09955 PF02910 Fumarate reductase flavoprotein C-term LQF09_09960 PF13085 2Fe-2S iron-sulfur cluster binding domain LQF09_09965 PF03937 Flavinator of succinate dehydrogenase LQF09_09970 PF00285 Citrate synthase, C-terminal domain LQF09_09975 PF02779 Transketolase, pyrimidine binding domain LQF09_09975 PF16870 2-oxoglutarate dehydrogenase C-terminal LQF09_09975 PF00676 Dehydrogenase E1 component LQF09_09975 PF16078 2-oxoglutarate dehydrogenase N-terminus LQF09_09980 PF00364 Biotin-requiring enzyme LQF09_09980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQF09_09980 PF02817 e3 binding domain LQF09_09985 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_09985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQF09_09990 PF03969 AFG1-like ATPase LQF09_10020 PF07963 Prokaryotic N-terminal methylation motif LQF09_10020 PF11612 Type II secretion system (T2SS), protein J LQF09_10025 PF07963 Prokaryotic N-terminal methylation motif LQF09_10025 PF02501 Type II secretion system (T2SS), protein I LQF09_10030 PF07963 Prokaryotic N-terminal methylation motif LQF09_10035 PF07963 Prokaryotic N-terminal methylation motif LQF09_10035 PF08334 Type II secretion system (T2SS), protein G LQF09_10040 PF00482 Type II secretion system (T2SS), protein F LQF09_10045 PF00437 Type II/IV secretion system protein LQF09_10050 PF00263 Bacterial type II and III secretion system protein LQF09_10050 PF03958 Bacterial type II/III secretion system short domain LQF09_10060 PF00924 Mechanosensitive ion channel LQF09_10065 PF13307 Helicase C-terminal domain LQF09_10065 PF04851 Type III restriction enzyme, res subunit LQF09_10070 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LQF09_10075 PF00994 Probable molybdopterin binding domain LQF09_10075 PF03454 MoeA C-terminal region (domain IV) LQF09_10075 PF03453 MoeA N-terminal region (domain I and II) LQF09_10080 PF02597 ThiS family LQF09_10085 PF02391 MoaE protein LQF09_10105 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_10105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQF09_10110 PF03600 Citrate transporter LQF09_10110 PF02080 TrkA-C domain LQF09_10115 PF00255 Glutathione peroxidase LQF09_10125 PF03976 Polyphosphate kinase 2 (PPK2) LQF09_10130 PF07859 alpha/beta hydrolase fold LQF09_10140 PF00156 Phosphoribosyl transferase domain LQF09_10145 PF14437 MafB19-like deaminase LQF09_10150 PF03734 L,D-transpeptidase catalytic domain LQF09_10150 PF01476 LysM domain LQF09_10170 PF02618 YceG-like family LQF09_10175 PF02223 Thymidylate kinase LQF09_10180 PF09115 DNA polymerase III, delta subunit, C terminal LQF09_10190 PF01026 TatD related DNase LQF09_10205 PF14525 AraC-binding-like domain LQF09_10205 PF12833 Helix-turn-helix domain LQF09_10210 PF00106 short chain dehydrogenase LQF09_10215 PF00970 Oxidoreductase FAD-binding domain LQF09_10215 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_10215 PF00175 Oxidoreductase NAD-binding domain LQF09_10220 PF00866 Ring hydroxylating beta subunit LQF09_10225 PF00355 Rieske [2Fe-2S] domain LQF09_10225 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LQF09_10230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQF09_10240 PF02653 Branched-chain amino acid transport system / permease component LQF09_10245 PF11862 Domain of unknown function (DUF3382) LQF09_10245 PF02653 Branched-chain amino acid transport system / permease component LQF09_10250 PF00005 ABC transporter LQF09_10250 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_10255 PF00005 ABC transporter LQF09_10290 PF01554 MatE LQF09_10310 PF01726 LexA DNA binding domain LQF09_10310 PF00717 Peptidase S24-like LQF09_10315 PF08240 Alcohol dehydrogenase GroES-like domain LQF09_10320 PF00578 AhpC/TSA family LQF09_10325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQF09_10330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQF09_10330 PF00005 ABC transporter LQF09_10335 PF01464 Transglycosylase SLT domain LQF09_10335 PF01476 LysM domain LQF09_10340 PF16123 Hydroxyacylglutathione hydrolase C-terminus LQF09_10340 PF00753 Metallo-beta-lactamase superfamily LQF09_10350 PF00075 RNase H LQF09_10355 PF00929 Exonuclease LQF09_10360 PF00392 Bacterial regulatory proteins, gntR family LQF09_10360 PF03061 Thioesterase superfamily LQF09_10360 PF00571 CBS domain LQF09_10360 PF07085 DRTGG domain LQF09_10375 PF00488 MutS domain V LQF09_10375 PF01624 MutS domain I LQF09_10375 PF05192 MutS domain III LQF09_10375 PF05188 MutS domain II LQF09_10375 PF05190 MutS family domain IV LQF09_10385 PF00459 Inositol monophosphatase family LQF09_10390 PF00588 SpoU rRNA Methylase family LQF09_10395 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_10400 PF02082 Transcriptional regulator LQF09_10405 PF00266 Aminotransferase class-V LQF09_10410 PF00266 Aminotransferase class-V LQF09_10415 PF01592 NifU-like N terminal domain LQF09_10420 PF01521 Iron-sulphur cluster biosynthesis LQF09_10425 PF07743 HSCB C-terminal oligomerisation domain LQF09_10430 PF00012 Hsp70 protein LQF09_10435 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_10440 PF04384 Iron-sulphur cluster assembly LQF09_10445 PF00072 Response regulator receiver domain LQF09_10445 PF00486 Transcriptional regulatory protein, C terminal LQF09_10450 PF05175 Methyltransferase small domain LQF09_10455 PF07687 Peptidase dimerisation domain LQF09_10455 PF01546 Peptidase family M20/M25/M40 LQF09_10460 PF00437 Type II/IV secretion system protein LQF09_10465 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_10465 PF14602 Hexapeptide repeat of succinyl-transferase LQF09_10465 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LQF09_10470 PF00155 Aminotransferase class I and II LQF09_10475 PF02463 RecF/RecN/SMC N terminal domain LQF09_10480 PF04354 ZipA, C-terminal FtsZ-binding domain LQF09_10485 PF12826 Helix-hairpin-helix motif LQF09_10485 PF03120 NAD-dependent DNA ligase OB-fold domain LQF09_10485 PF00533 BRCA1 C Terminus (BRCT) domain LQF09_10485 PF01653 NAD-dependent DNA ligase adenylation domain LQF09_10485 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LQF09_10490 PF00483 Nucleotidyl transferase LQF09_10495 PF00679 Elongation factor G C-terminus LQF09_10495 PF00009 Elongation factor Tu GTP binding domain LQF09_10495 PF03144 Elongation factor Tu domain 2 LQF09_10500 PF01048 Phosphorylase superfamily LQF09_10505 PF03350 Uncharacterized protein family, UPF0114 LQF09_10510 PF01966 HD domain LQF09_10510 PF08335 GlnD PII-uridylyltransferase LQF09_10515 PF00557 Metallopeptidase family M24 LQF09_10520 PF00318 Ribosomal protein S2 LQF09_10525 PF00889 Elongation factor TS LQF09_10530 PF00696 Amino acid kinase family LQF09_10535 PF01765 Ribosome recycling factor LQF09_10540 PF01255 Putative undecaprenyl diphosphate synthase LQF09_10550 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LQF09_10550 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LQF09_10550 PF13288 DXP reductoisomerase C-terminal domain LQF09_10555 PF13180 PDZ domain LQF09_10555 PF17820 PDZ domain LQF09_10555 PF02163 Peptidase family M50 LQF09_10560 PF01103 Surface antigen LQF09_10560 PF07244 Surface antigen variable number repeat LQF09_10570 PF14602 Hexapeptide repeat of succinyl-transferase LQF09_10570 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LQF09_10570 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_10575 PF07977 FabA-like domain LQF09_10580 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LQF09_10580 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_10585 PF02684 Lipid-A-disaccharide synthetase LQF09_10590 PF01351 Ribonuclease HII LQF09_10595 PF00588 SpoU rRNA Methylase family LQF09_10595 PF08032 RNA 2'-O ribose methyltransferase substrate binding LQF09_10605 PF03883 Peroxide stress protein YaaA LQF09_10610 PF00246 Zinc carboxypeptidase LQF09_10610 PF18027 Cytosolic carboxypeptidase N-terminal domain LQF09_10615 PF01593 Flavin containing amine oxidoreductase LQF09_10630 PF00005 ABC transporter LQF09_10645 PF16363 GDP-mannose 4,6 dehydratase LQF09_10650 PF04321 RmlD substrate binding domain LQF09_10655 PF01050 Mannose-6-phosphate isomerase LQF09_10655 PF00483 Nucleotidyl transferase LQF09_10665 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQF09_10665 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQF09_10670 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQF09_10675 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LQF09_10680 PF00374 Nickel-dependent hydrogenase LQF09_10690 PF18073 Rubredoxin metal binding domain LQF09_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_10695 PF03466 LysR substrate binding domain LQF09_10700 PF07690 Major Facilitator Superfamily LQF09_10705 PF03167 Uracil DNA glycosylase superfamily LQF09_10710 PF00583 Acetyltransferase (GNAT) family LQF09_10715 PF00814 Glycoprotease family LQF09_10725 PF00486 Transcriptional regulatory protein, C terminal LQF09_10725 PF00072 Response regulator receiver domain LQF09_10730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_10730 PF00512 His Kinase A (phospho-acceptor) domain LQF09_10730 PF00672 HAMP domain LQF09_10735 PF04279 Intracellular septation protein A LQF09_10740 PF03795 YCII-related domain LQF09_10755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_10755 PF12806 Acetyl-CoA dehydrogenase C-terminal like LQF09_10755 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_10755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_10765 PF01012 Electron transfer flavoprotein domain LQF09_10765 PF00766 Electron transfer flavoprotein FAD-binding domain LQF09_10770 PF01012 Electron transfer flavoprotein domain LQF09_10780 PF01026 TatD related DNase LQF09_10785 PF00378 Enoyl-CoA hydratase/isomerase LQF09_10790 PF00501 AMP-binding enzyme LQF09_10790 PF13193 AMP-binding enzyme C-terminal domain LQF09_10805 PF00005 ABC transporter LQF09_10810 PF02405 Permease MlaE LQF09_10815 PF02541 Ppx/GppA phosphatase family LQF09_10820 PF02503 Polyphosphate kinase middle domain LQF09_10820 PF13090 Polyphosphate kinase C-terminal domain 2 LQF09_10820 PF17941 Polyphosphate kinase C-terminal domain 1 LQF09_10820 PF13089 Polyphosphate kinase N-terminal domain LQF09_10825 PF13291 ACT domain LQF09_10825 PF04607 Region found in RelA / SpoT proteins LQF09_10825 PF02824 TGS domain LQF09_10830 PF06167 Glucose-regulated metallo-peptidase M90 LQF09_10850 PF02542 YgbB family LQF09_10855 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LQF09_10860 PF01875 Memo-like protein LQF09_10865 PF01871 AMMECR1 LQF09_10885 PF17757 UvrB interaction domain LQF09_10885 PF03461 TRCF domain LQF09_10885 PF00270 DEAD/DEAH box helicase LQF09_10885 PF02559 CarD-like/TRCF domain LQF09_10885 PF00271 Helicase conserved C-terminal domain LQF09_10890 PF00990 Diguanylate cyclase, GGDEF domain LQF09_10890 PF00563 EAL domain LQF09_10890 PF03707 Bacterial signalling protein N terminal repeat LQF09_10895 PF01544 CorA-like Mg2+ transporter protein LQF09_10905 PF03050 Transposase IS66 family LQF09_10905 PF13007 Transposase C of IS166 homeodomain LQF09_10905 PF13817 IS66 C-terminal element LQF09_10905 PF13005 zinc-finger binding domain of transposase IS66 LQF09_10925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_10925 PF03466 LysR substrate binding domain LQF09_10930 PF00005 ABC transporter LQF09_10945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQF09_10945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQF09_10960 PF00665 Integrase core domain LQF09_10965 PF01695 IstB-like ATP binding protein LQF09_10985 PF03352 Methyladenine glycosylase LQF09_11035 PF00313 'Cold-shock' DNA-binding domain LQF09_11040 PF00793 DAHP synthetase I family LQF09_11050 PF00005 ABC transporter LQF09_11055 PF13472 GDSL-like Lipase/Acylhydrolase family LQF09_11060 PF02769 AIR synthase related protein, C-terminal domain LQF09_11060 PF00586 AIR synthase related protein, N-terminal domain LQF09_11065 PF00581 Rhodanese-like domain LQF09_11075 PF00512 His Kinase A (phospho-acceptor) domain LQF09_11075 PF08446 PAS fold LQF09_11075 PF00360 Phytochrome region LQF09_11075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_11075 PF01590 GAF domain LQF09_11080 PF13380 CoA binding domain LQF09_11080 PF13607 Succinyl-CoA ligase like flavodoxin domain LQF09_11080 PF00583 Acetyltransferase (GNAT) family LQF09_11105 PF01066 CDP-alcohol phosphatidyltransferase LQF09_11125 PF00158 Sigma-54 interaction domain LQF09_11125 PF00072 Response regulator receiver domain LQF09_11125 PF02954 Bacterial regulatory protein, Fis family LQF09_11130 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_11145 PF16199 Radical_SAM C-terminal domain LQF09_11145 PF04055 Radical SAM superfamily LQF09_11150 PF01541 GIY-YIG catalytic domain LQF09_11150 PF02151 UvrB/uvrC motif LQF09_11150 PF08459 UvrC Helix-hairpin-helix N-terminal LQF09_11155 PF00933 Glycosyl hydrolase family 3 N terminal domain LQF09_11160 PF01648 4'-phosphopantetheinyl transferase superfamily LQF09_11165 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LQF09_11170 PF11967 Recombination protein O N terminal LQF09_11170 PF02565 Recombination protein O C terminal LQF09_11175 PF07650 KH domain LQF09_11175 PF01926 50S ribosome-binding GTPase LQF09_11180 PF00035 Double-stranded RNA binding motif LQF09_11180 PF14622 Ribonuclease-III-like LQF09_11190 PF10502 Signal peptidase, peptidase S26 LQF09_11195 PF00679 Elongation factor G C-terminus LQF09_11195 PF00009 Elongation factor Tu GTP binding domain LQF09_11195 PF03144 Elongation factor Tu domain 2 LQF09_11195 PF06421 GTP-binding protein LepA C-terminus LQF09_11205 PF13180 PDZ domain LQF09_11215 PF03888 MucB/RseB N-terminal domain LQF09_11215 PF17188 MucB/RseB C-terminal domain LQF09_11225 PF04542 Sigma-70 region 2 LQF09_11225 PF08281 Sigma-70, region 4 LQF09_11230 PF02910 Fumarate reductase flavoprotein C-term LQF09_11230 PF00890 FAD binding domain LQF09_11240 PF00109 Beta-ketoacyl synthase, N-terminal domain LQF09_11240 PF02801 Beta-ketoacyl synthase, C-terminal domain LQF09_11245 PF00550 Phosphopantetheine attachment site LQF09_11255 PF00698 Acyl transferase domain LQF09_11260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LQF09_11260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LQF09_11265 PF02504 Fatty acid synthesis protein LQF09_11270 PF01783 Ribosomal L32p protein family LQF09_11275 PF02620 Large ribosomal RNA subunit accumulation protein YceD LQF09_11280 PF02545 Maf-like protein LQF09_11285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_11290 PF13419 Haloacid dehalogenase-like hydrolase LQF09_11295 PF01479 S4 domain LQF09_11295 PF00849 RNA pseudouridylate synthase LQF09_11300 PF00575 S1 RNA binding domain LQF09_11300 PF12111 Polyribonucleotide phosphorylase C terminal LQF09_11300 PF10150 Ribonuclease E/G family LQF09_11305 PF01451 Low molecular weight phosphotyrosine protein phosphatase LQF09_11310 PF02151 UvrB/uvrC motif LQF09_11310 PF00271 Helicase conserved C-terminal domain LQF09_11310 PF04851 Type III restriction enzyme, res subunit LQF09_11310 PF12344 Ultra-violet resistance protein B LQF09_11310 PF17757 UvrB interaction domain LQF09_11315 PF00155 Aminotransferase class I and II LQF09_11330 PF13654 AAA domain LQF09_11330 PF05362 Lon protease (S16) C-terminal proteolytic domain LQF09_11335 PF06463 Molybdenum Cofactor Synthesis C LQF09_11335 PF04055 Radical SAM superfamily LQF09_11350 PF00107 Zinc-binding dehydrogenase LQF09_11350 PF08240 Alcohol dehydrogenase GroES-like domain LQF09_11360 PF00534 Glycosyl transferases group 1 LQF09_11360 PF13439 Glycosyltransferase Family 4 LQF09_11375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQF09_11375 PF01872 RibD C-terminal domain LQF09_11380 PF00925 GTP cyclohydrolase II LQF09_11395 PF02222 ATP-grasp domain LQF09_11395 PF01370 NAD dependent epimerase/dehydratase family LQF09_11415 PF07687 Peptidase dimerisation domain LQF09_11415 PF01546 Peptidase family M20/M25/M40 LQF09_11420 PF03880 DbpA RNA binding domain LQF09_11420 PF00270 DEAD/DEAH box helicase LQF09_11420 PF00271 Helicase conserved C-terminal domain LQF09_11425 PF00850 Histone deacetylase domain LQF09_11445 PF00378 Enoyl-CoA hydratase/isomerase LQF09_11455 PF00216 Bacterial DNA-binding protein LQF09_11460 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_11460 PF05362 Lon protease (S16) C-terminal proteolytic domain LQF09_11460 PF02190 ATP-dependent protease La (LON) substrate-binding domain LQF09_11465 PF10431 C-terminal, D2-small domain, of ClpB protein LQF09_11465 PF06689 ClpX C4-type zinc finger LQF09_11465 PF07724 AAA domain (Cdc48 subfamily) LQF09_11470 PF00574 Clp protease LQF09_11475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQF09_11475 PF05698 Bacterial trigger factor protein (TF) C-terminus LQF09_11475 PF05697 Bacterial trigger factor protein (TF) LQF09_11480 PF08298 PrkA AAA domain LQF09_11480 PF06798 PrkA serine protein kinase C-terminal domain LQF09_11485 PF04285 Protein of unknown function (DUF444) LQF09_11490 PF04293 SpoVR like protein LQF09_11495 PF03853 YjeF-related protein N-terminus LQF09_11495 PF01256 Carbohydrate kinase LQF09_11500 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LQF09_11500 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LQF09_11520 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LQF09_11525 PF01292 Prokaryotic cytochrome b561 LQF09_11530 PF04264 YceI-like domain LQF09_11535 PF04264 YceI-like domain LQF09_11540 PF00291 Pyridoxal-phosphate dependent enzyme LQF09_11540 PF14821 Threonine synthase N terminus LQF09_11545 PF07311 Dodecin LQF09_11555 PF03475 3-alpha domain LQF09_11555 PF03473 MOSC domain LQF09_11560 PF00742 Homoserine dehydrogenase LQF09_11560 PF01842 ACT domain LQF09_11560 PF03447 Homoserine dehydrogenase, NAD binding domain LQF09_11565 PF00155 Aminotransferase class I and II LQF09_11575 PF00578 AhpC/TSA family LQF09_11580 PF13638 PIN domain LQF09_11580 PF02562 PhoH-like protein LQF09_11595 PF00877 NlpC/P60 family LQF09_11605 PF13416 Bacterial extracellular solute-binding protein LQF09_11610 PF00990 Diguanylate cyclase, GGDEF domain LQF09_11615 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_11620 PF08402 TOBE domain LQF09_11620 PF00005 ABC transporter LQF09_11625 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LQF09_11630 PF04377 Arginine-tRNA-protein transferase, C terminus LQF09_11630 PF04376 Arginine-tRNA-protein transferase, N terminus LQF09_11635 PF01180 Dihydroorotate dehydrogenase LQF09_11640 PF02608 ABC transporter substrate-binding protein PnrA-like LQF09_11650 PF00034 Cytochrome c LQF09_11655 PF00115 Cytochrome C and Quinol oxidase polypeptide I LQF09_11660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LQF09_11660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LQF09_11665 PF00510 Cytochrome c oxidase subunit III LQF09_11675 PF08406 CbbQ/NirQ/NorQ C-terminal LQF09_11675 PF07728 AAA domain (dynein-related subfamily) LQF09_11700 PF04940 Sensors of blue-light using FAD LQF09_11700 PF00563 EAL domain LQF09_11715 PF04055 Radical SAM superfamily LQF09_11715 PF13186 Iron-sulfur cluster-binding domain LQF09_11720 PF17805 AsnC-like ligand binding domain LQF09_11720 PF13404 AsnC-type helix-turn-helix domain LQF09_11725 PF17805 AsnC-like ligand binding domain LQF09_11725 PF13404 AsnC-type helix-turn-helix domain LQF09_11730 PF17805 AsnC-like ligand binding domain LQF09_11730 PF13404 AsnC-type helix-turn-helix domain LQF09_11740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_11750 PF09459 Ethylbenzene dehydrogenase LQF09_11755 PF03264 NapC/NirT cytochrome c family, N-terminal region LQF09_11760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_11765 PF10414 Sirohaem synthase dimerisation region LQF09_11765 PF14824 Sirohaem biosynthesis protein central LQF09_11765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQF09_11785 PF00072 Response regulator receiver domain LQF09_11790 PF00563 EAL domain LQF09_11790 PF03707 Bacterial signalling protein N terminal repeat LQF09_11790 PF00990 Diguanylate cyclase, GGDEF domain LQF09_11795 PF16868 NMT1-like family LQF09_11800 PF01590 GAF domain LQF09_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_11800 PF00512 His Kinase A (phospho-acceptor) domain LQF09_11800 PF08446 PAS fold LQF09_11800 PF00360 Phytochrome region LQF09_11805 PF02540 NAD synthase LQF09_11805 PF00117 Glutamine amidotransferase class-I LQF09_11805 PF00958 GMP synthase C terminal domain LQF09_11810 PF00571 CBS domain LQF09_11810 PF00478 IMP dehydrogenase / GMP reductase domain LQF09_11820 PF03658 RnfH family Ubiquitin LQF09_11830 PF01668 SmpB protein LQF09_11835 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LQF09_11840 PF12911 N-terminal TM domain of oligopeptide transport permease C LQF09_11840 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_11845 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_11850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LQF09_11860 PF13145 PPIC-type PPIASE domain LQF09_11865 PF00990 Diguanylate cyclase, GGDEF domain LQF09_11865 PF03707 Bacterial signalling protein N terminal repeat LQF09_11865 PF00563 EAL domain LQF09_11870 PF17871 AAA lid domain LQF09_11870 PF02861 Clp amino terminal domain, pathogenicity island component LQF09_11870 PF10431 C-terminal, D2-small domain, of ClpB protein LQF09_11870 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_11870 PF07724 AAA domain (Cdc48 subfamily) LQF09_11875 PF00474 Sodium:solute symporter family LQF09_11880 PF00929 Exonuclease LQF09_11885 PF00072 Response regulator receiver domain LQF09_11885 PF00486 Transcriptional regulatory protein, C terminal LQF09_11890 PF00512 His Kinase A (phospho-acceptor) domain LQF09_11890 PF18698 Histidine kinase sensor domain LQF09_11890 PF00989 PAS fold LQF09_11890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_11890 PF00672 HAMP domain LQF09_11900 PF16177 Acetyl-coenzyme A synthetase N-terminus LQF09_11900 PF00501 AMP-binding enzyme LQF09_11900 PF13193 AMP-binding enzyme C-terminal domain LQF09_11905 PF05683 Fumarase C-terminus LQF09_11905 PF05681 Fumarate hydratase (Fumerase) LQF09_11910 PF03707 Bacterial signalling protein N terminal repeat LQF09_11910 PF00990 Diguanylate cyclase, GGDEF domain LQF09_11910 PF00563 EAL domain LQF09_11915 PF02896 PEP-utilising enzyme, TIM barrel domain LQF09_11915 PF00391 PEP-utilising enzyme, mobile domain LQF09_11915 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LQF09_11920 PF03618 Kinase/pyrophosphorylase LQF09_11930 PF01641 SelR domain LQF09_11940 PF02803 Thiolase, C-terminal domain LQF09_11940 PF00108 Thiolase, N-terminal domain LQF09_11945 PF03186 CobD/Cbib protein LQF09_11945 PF17113 Regulatory signalling modulator protein AmpE LQF09_11950 PF00293 NUDIX domain LQF09_11970 PF07963 Prokaryotic N-terminal methylation motif LQF09_11980 PF05567 Neisseria PilC beta-propeller domain LQF09_11990 PF07963 Prokaryotic N-terminal methylation motif LQF09_11990 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LQF09_12005 PF04461 Protein of unknown function (DUF520) LQF09_12010 PF06865 Pyrimidine/purine nucleoside phosphorylase LQF09_12020 PF00764 Arginosuccinate synthase LQF09_12025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LQF09_12025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LQF09_12030 PF00202 Aminotransferase class-III LQF09_12040 PF01649 Ribosomal protein S20 LQF09_12045 PF03023 Lipid II flippase MurJ LQF09_12050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_12050 PF03466 LysR substrate binding domain LQF09_12055 PF00175 Oxidoreductase NAD-binding domain LQF09_12055 PF00970 Oxidoreductase FAD-binding domain LQF09_12060 PF03707 Bacterial signalling protein N terminal repeat LQF09_12060 PF00990 Diguanylate cyclase, GGDEF domain LQF09_12060 PF00563 EAL domain LQF09_12065 PF00255 Glutathione peroxidase LQF09_12070 PF00005 ABC transporter LQF09_12070 PF12848 ABC transporter LQF09_12075 PF01435 Peptidase family M48 LQF09_12080 PF05987 Bacterial protein of unknown function (DUF898) LQF09_12120 PF00263 Bacterial type II and III secretion system protein LQF09_12120 PF03958 Bacterial type II/III secretion system short domain LQF09_12125 PF00437 Type II/IV secretion system protein LQF09_12145 PF05593 RHS Repeat LQF09_12145 PF03527 RHS protein LQF09_12175 PF09350 Domain of unknown function (DUF1992) LQF09_12180 PF00892 EamA-like transporter family LQF09_12195 PF12592 Protein of unknown function (DUF3763) LQF09_12195 PF07728 AAA domain (dynein-related subfamily) LQF09_12195 PF17868 AAA lid domain LQF09_12205 PF00211 Adenylate and Guanylate cyclase catalytic domain LQF09_12205 PF00072 Response regulator receiver domain LQF09_12210 PF00672 HAMP domain LQF09_12210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQF09_12210 PF00512 His Kinase A (phospho-acceptor) domain LQF09_12210 PF01627 Hpt domain LQF09_12210 PF00072 Response regulator receiver domain LQF09_12210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_12215 PF00072 Response regulator receiver domain LQF09_12215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_12230 PF12843 Putative quorum-sensing-regulated virulence factor LQF09_12240 PF00271 Helicase conserved C-terminal domain LQF09_12270 PF00005 ABC transporter LQF09_12275 PF02405 Permease MlaE LQF09_12280 PF13533 Biotin-lipoyl like LQF09_12285 PF00005 ABC transporter LQF09_12310 PF00534 Glycosyl transferases group 1 LQF09_12310 PF13439 Glycosyltransferase Family 4 LQF09_12315 PF03734 L,D-transpeptidase catalytic domain LQF09_12320 PF05951 Bacterial protein of unknown function (DUF882) LQF09_12325 PF01219 Prokaryotic diacylglycerol kinase LQF09_12330 PF03793 PASTA domain LQF09_12330 PF00069 Protein kinase domain LQF09_12335 PF07995 Glucose / Sorbosone dehydrogenase LQF09_12345 PF01136 Peptidase family U32 LQF09_12345 PF12392 Collagenase LQF09_12375 PF05981 CreA protein LQF09_12395 PF08331 Domain of unknown function (DUF1730) LQF09_12400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LQF09_12405 PF01520 N-acetylmuramoyl-L-alanine amidase LQF09_12405 PF11741 AMIN domain LQF09_12410 PF06574 FAD synthetase LQF09_12410 PF01687 Riboflavin kinase LQF09_12415 PF00133 tRNA synthetases class I (I, L, M and V) LQF09_12415 PF06827 Zinc finger found in FPG and IleRS LQF09_12415 PF08264 Anticodon-binding domain of tRNA LQF09_12420 PF01252 Signal peptidase (SPase) II LQF09_12425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQF09_12430 PF02401 LytB protein LQF09_12440 PF02609 Exonuclease VII small subunit LQF09_12445 PF00348 Polyprenyl synthetase LQF09_12450 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LQF09_12450 PF02779 Transketolase, pyrimidine binding domain LQF09_12450 PF02780 Transketolase, C-terminal domain LQF09_12455 PF02649 Type I GTP cyclohydrolase folE2 LQF09_12460 PF02627 Carboxymuconolactone decarboxylase family LQF09_12480 PF00226 DnaJ domain LQF09_12480 PF01556 DnaJ C terminal domain LQF09_12490 PF00873 AcrB/AcrD/AcrF family LQF09_12495 PF02403 Seryl-tRNA synthetase N-terminal domain LQF09_12495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQF09_12505 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_12505 PF16193 AAA C-terminal domain LQF09_12505 PF12002 MgsA AAA+ ATPase C terminal LQF09_12510 PF03548 Outer membrane lipoprotein carrier protein LolA LQF09_12515 PF17854 FtsK alpha domain LQF09_12515 PF01580 FtsK/SpoIIIE family LQF09_12515 PF09397 Ftsk gamma domain LQF09_12515 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LQF09_12520 PF00027 Cyclic nucleotide-binding domain LQF09_12520 PF13545 Crp-like helix-turn-helix domain LQF09_12525 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_12530 PF01713 Smr domain LQF09_12535 PF00543 Nitrogen regulatory protein P-II LQF09_12540 PF00795 Carbon-nitrogen hydrolase LQF09_12540 PF02540 NAD synthase LQF09_12550 PF00293 NUDIX domain LQF09_12555 PF00361 Proton-conducting membrane transporter LQF09_12560 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LQF09_12560 PF00361 Proton-conducting membrane transporter LQF09_12565 PF00361 Proton-conducting membrane transporter LQF09_12565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQF09_12570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LQF09_12575 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LQF09_12580 PF12838 4Fe-4S dicluster domain LQF09_12585 PF00146 NADH dehydrogenase LQF09_12590 PF00384 Molybdopterin oxidoreductase LQF09_12590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQF09_12590 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LQF09_12595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQF09_12595 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQF09_12595 PF10531 SLBB domain LQF09_12605 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LQF09_12610 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LQF09_12615 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LQF09_12620 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LQF09_12630 PF03840 Preprotein translocase SecG subunit LQF09_12635 PF00121 Triosephosphate isomerase LQF09_12640 PF01258 Prokaryotic dksA/traR C4-type zinc finger LQF09_12645 PF03725 3' exoribonuclease family, domain 2 LQF09_12645 PF00013 KH domain LQF09_12645 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LQF09_12645 PF01138 3' exoribonuclease family, domain 1 LQF09_12645 PF00575 S1 RNA binding domain LQF09_12650 PF00312 Ribosomal protein S15 LQF09_12655 PF16198 tRNA pseudouridylate synthase B C-terminal domain LQF09_12655 PF09157 Pseudouridine synthase II TruB, C-terminal LQF09_12655 PF01509 TruB family pseudouridylate synthase (N terminal domain) LQF09_12660 PF02033 Ribosome-binding factor A LQF09_12665 PF11987 Translation-initiation factor 2 LQF09_12665 PF08364 Bacterial translation initiation factor IF-2 associated region LQF09_12665 PF04760 Translation initiation factor IF-2, N-terminal region LQF09_12665 PF00009 Elongation factor Tu GTP binding domain LQF09_12670 PF08529 NusA N-terminal domain LQF09_12670 PF13184 NusA-like KH domain LQF09_12675 PF17384 RimP C-terminal SH3 domain LQF09_12675 PF02576 RimP N-terminal domain LQF09_12680 PF01479 S4 domain LQF09_12680 PF00849 RNA pseudouridylate synthase LQF09_12685 PF04079 Segregation and condensation complex subunit ScpB LQF09_12690 PF02616 Segregation and condensation protein ScpA LQF09_12695 PF00579 tRNA synthetases class I (W and Y) LQF09_12700 PF02163 Peptidase family M50 LQF09_12705 PF01300 Telomere recombination LQF09_12710 PF02811 PHP domain LQF09_12720 PF01926 50S ribosome-binding GTPase LQF09_12725 PF00313 'Cold-shock' DNA-binding domain LQF09_12730 PF00271 Helicase conserved C-terminal domain LQF09_12730 PF03880 DbpA RNA binding domain LQF09_12730 PF00270 DEAD/DEAH box helicase LQF09_12740 PF00563 EAL domain LQF09_12740 PF00360 Phytochrome region LQF09_12740 PF00990 Diguanylate cyclase, GGDEF domain LQF09_12740 PF01590 GAF domain LQF09_12745 PF07152 YaeQ protein LQF09_12770 PF01227 GTP cyclohydrolase I LQF09_12780 PF01384 Phosphate transporter family LQF09_12790 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LQF09_12795 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_12805 PF00877 NlpC/P60 family LQF09_12810 PF04977 Septum formation initiator LQF09_12815 PF00113 Enolase, C-terminal TIM barrel domain LQF09_12815 PF03952 Enolase, N-terminal domain LQF09_12820 PF00793 DAHP synthetase I family LQF09_12825 PF00117 Glutamine amidotransferase class-I LQF09_12825 PF06418 CTP synthase N-terminus LQF09_12830 PF05088 Bacterial NAD-glutamate dehydrogenase LQF09_12835 PF00563 EAL domain LQF09_12835 PF03707 Bacterial signalling protein N terminal repeat LQF09_12835 PF00990 Diguanylate cyclase, GGDEF domain LQF09_12855 PF00501 AMP-binding enzyme LQF09_12855 PF13193 AMP-binding enzyme C-terminal domain LQF09_12870 PF04229 GrpB protein LQF09_12870 PF13673 Acetyltransferase (GNAT) domain LQF09_12875 PF09335 SNARE associated Golgi protein LQF09_12905 PF00990 Diguanylate cyclase, GGDEF domain LQF09_12920 PF00892 EamA-like transporter family LQF09_12935 PF00579 tRNA synthetases class I (W and Y) LQF09_12940 PF13307 Helicase C-terminal domain LQF09_12940 PF04851 Type III restriction enzyme, res subunit LQF09_12940 PF00929 Exonuclease LQF09_12945 PF02678 Pirin LQF09_12945 PF05726 Pirin C-terminal cupin domain LQF09_12950 PF00583 Acetyltransferase (GNAT) family LQF09_12955 PF00202 Aminotransferase class-III LQF09_12960 PF06339 Ectoine synthase LQF09_12965 PF05721 Phytanoyl-CoA dioxygenase (PhyH) LQF09_12970 PF00472 RF-1 domain LQF09_12985 PF01850 PIN domain LQF09_13000 PF03481 Putative GTP-binding controlling metal-binding LQF09_13000 PF01300 Telomere recombination LQF09_13005 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LQF09_13005 PF02222 ATP-grasp domain LQF09_13010 PF00731 AIR carboxylase LQF09_13015 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LQF09_13015 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LQF09_13020 PF03471 Transporter associated domain LQF09_13020 PF00999 Sodium/hydrogen exchanger family LQF09_13020 PF02080 TrkA-C domain LQF09_13025 PF00196 Bacterial regulatory proteins, luxR family LQF09_13025 PF00072 Response regulator receiver domain LQF09_13030 PF00989 PAS fold LQF09_13030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_13030 PF00512 His Kinase A (phospho-acceptor) domain LQF09_13040 PF00456 Transketolase, thiamine diphosphate binding domain LQF09_13040 PF17831 Pyruvate dehydrogenase E1 component middle domain LQF09_13045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQF09_13045 PF02817 e3 binding domain LQF09_13045 PF00364 Biotin-requiring enzyme LQF09_13050 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_13050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LQF09_13055 PF07715 TonB-dependent Receptor Plug Domain LQF09_13055 PF00593 TonB dependent receptor LQF09_13070 PF03707 Bacterial signalling protein N terminal repeat LQF09_13070 PF00990 Diguanylate cyclase, GGDEF domain LQF09_13070 PF00563 EAL domain LQF09_13075 PF01966 HD domain LQF09_13075 PF11871 Domain of unknown function (DUF3391) LQF09_13080 PF02769 AIR synthase related protein, C-terminal domain LQF09_13080 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LQF09_13080 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LQF09_13085 PF01557 Fumarylacetoacetate (FAA) hydrolase family LQF09_13095 PF00196 Bacterial regulatory proteins, luxR family LQF09_13095 PF00072 Response regulator receiver domain LQF09_13100 PF13426 PAS domain LQF09_13100 PF00072 Response regulator receiver domain LQF09_13100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_13100 PF08448 PAS fold LQF09_13100 PF00512 His Kinase A (phospho-acceptor) domain LQF09_13110 PF00970 Oxidoreductase FAD-binding domain LQF09_13110 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_13110 PF00175 Oxidoreductase NAD-binding domain LQF09_13115 PF02332 Methane/Phenol/Toluene Hydroxylase LQF09_13120 PF02406 MmoB/DmpM family LQF09_13125 PF00355 Rieske [2Fe-2S] domain LQF09_13130 PF06234 Toluene-4-monooxygenase system protein B (TmoB) LQF09_13135 PF02332 Methane/Phenol/Toluene Hydroxylase LQF09_13140 PF01361 Tautomerase enzyme LQF09_13145 PF00682 HMGL-like LQF09_13145 PF07836 DmpG-like communication domain LQF09_13150 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQF09_13150 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LQF09_13155 PF03928 Haem-degrading LQF09_13165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQF09_13170 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_13170 PF00970 Oxidoreductase FAD-binding domain LQF09_13170 PF00175 Oxidoreductase NAD-binding domain LQF09_13175 PF04663 Phenol hydroxylase conserved region LQF09_13180 PF02332 Methane/Phenol/Toluene Hydroxylase LQF09_13180 PF04945 YHS domain LQF09_13185 PF02406 MmoB/DmpM family LQF09_13190 PF02332 Methane/Phenol/Toluene Hydroxylase LQF09_13195 PF06099 Phenol hydroxylase subunit LQF09_13200 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_13205 PF06505 Activator of aromatic catabolism LQF09_13205 PF02830 V4R domain LQF09_13205 PF00158 Sigma-54 interaction domain LQF09_13205 PF02954 Bacterial regulatory protein, Fis family LQF09_13235 PF08669 Glycine cleavage T-protein C-terminal barrel domain LQF09_13235 PF01571 Aminomethyltransferase folate-binding domain LQF09_13240 PF01597 Glycine cleavage H-protein LQF09_13245 PF02347 Glycine cleavage system P-protein LQF09_13260 PF00535 Glycosyl transferase family 2 LQF09_13260 PF07238 PilZ domain LQF09_13260 PF03552 Cellulose synthase LQF09_13265 PF00939 Sodium:sulfate symporter transmembrane region LQF09_13270 PF00365 Phosphofructokinase LQF09_13275 PF05191 Adenylate kinase, active site lid LQF09_13280 PF02348 Cytidylyltransferase LQF09_13285 PF03966 Trm112p-like protein LQF09_13290 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LQF09_13295 PF02472 Biopolymer transport protein ExbD/TolR LQF09_13300 PF01618 MotA/TolQ/ExbB proton channel family LQF09_13305 PF02601 Exonuclease VII, large subunit LQF09_13305 PF13742 OB-fold nucleic acid binding domain LQF09_13310 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LQF09_13310 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LQF09_13315 PF00849 RNA pseudouridylate synthase LQF09_13320 PF00923 Transaldolase/Fructose-6-phosphate aldolase LQF09_13325 PF01627 Hpt domain LQF09_13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_13325 PF00072 Response regulator receiver domain LQF09_13325 PF01584 CheW-like domain LQF09_13325 PF02895 Signal transducing histidine kinase, homodimeric domain LQF09_13330 PF04344 Chemotaxis phosphatase, CheZ LQF09_13335 PF00072 Response regulator receiver domain LQF09_13340 PF01584 CheW-like domain LQF09_13340 PF00072 Response regulator receiver domain LQF09_13345 PF01584 CheW-like domain LQF09_13345 PF00072 Response regulator receiver domain LQF09_13350 PF13677 Membrane MotB of proton-channel complex MotA/MotB LQF09_13350 PF00691 OmpA family LQF09_13355 PF01618 MotA/TolQ/ExbB proton channel family LQF09_13360 PF05280 Flagellar transcriptional activator (FlhC) LQF09_13365 PF05247 Flagellar transcriptional activator (FlhD) LQF09_13370 PF03707 Bacterial signalling protein N terminal repeat LQF09_13370 PF00563 EAL domain LQF09_13370 PF00990 Diguanylate cyclase, GGDEF domain LQF09_13375 PF00990 Diguanylate cyclase, GGDEF domain LQF09_13375 PF00072 Response regulator receiver domain LQF09_13385 PF02508 Rnf-Nqr subunit, membrane protein LQF09_13390 PF04060 Putative Fe-S cluster LQF09_13395 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQF09_13395 PF13237 4Fe-4S dicluster domain LQF09_13395 PF13375 RnfC Barrel sandwich hybrid domain LQF09_13395 PF10531 SLBB domain LQF09_13400 PF03116 NQR2, RnfD, RnfE family LQF09_13405 PF04205 FMN-binding domain LQF09_13410 PF02508 Rnf-Nqr subunit, membrane protein LQF09_13415 PF10576 Iron-sulfur binding domain of endonuclease III LQF09_13415 PF00633 Helix-hairpin-helix motif LQF09_13415 PF00730 HhH-GPD superfamily base excision DNA repair protein LQF09_13435 PF01926 50S ribosome-binding GTPase LQF09_13435 PF16360 GTP-binding GTPase Middle Region LQF09_13435 PF13167 GTP-binding GTPase N-terminal LQF09_13445 PF00999 Sodium/hydrogen exchanger family LQF09_13445 PF02080 TrkA-C domain LQF09_13445 PF03471 Transporter associated domain LQF09_13450 PF00403 Heavy-metal-associated domain LQF09_13460 PF00034 Cytochrome c LQF09_13465 PF00403 Heavy-metal-associated domain LQF09_13485 PF00394 Multicopper oxidase LQF09_13485 PF07731 Multicopper oxidase LQF09_13485 PF07732 Multicopper oxidase LQF09_13485 PF10518 TAT (twin-arginine translocation) pathway signal sequence LQF09_13510 PF08808 RES domain LQF09_13520 PF13495 Phage integrase, N-terminal SAM-like domain LQF09_13520 PF00589 Phage integrase family LQF09_13525 PF14319 Transposase zinc-binding domain LQF09_13525 PF04986 Putative transposase LQF09_13530 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) LQF09_13535 PF01867 CRISPR associated protein Cas1 LQF09_13555 PF09704 CRISPR-associated protein (Cas_Cas5) LQF09_13565 PF09344 CT1975-like protein LQF09_13575 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) LQF09_13580 PF00270 DEAD/DEAH box helicase LQF09_13580 PF18019 HD domain LQF09_13580 PF00271 Helicase conserved C-terminal domain LQF09_13590 PF00873 AcrB/AcrD/AcrF family LQF09_13595 PF00529 HlyD membrane-fusion protein of T1SS LQF09_13595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_13610 PF00486 Transcriptional regulatory protein, C terminal LQF09_13610 PF00072 Response regulator receiver domain LQF09_13615 PF00512 His Kinase A (phospho-acceptor) domain LQF09_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_13615 PF00672 HAMP domain LQF09_13625 PF04055 Radical SAM superfamily LQF09_13630 PF01434 Peptidase family M41 LQF09_13630 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_13630 PF17862 AAA+ lid domain LQF09_13645 PF01047 MarR family LQF09_13650 PF00654 Voltage gated chloride channel LQF09_13655 PF00183 Hsp90 protein LQF09_13655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_13660 PF17200 Single Cache domain 2 LQF09_13660 PF00672 HAMP domain LQF09_13660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_13665 PF01272 Transcription elongation factor, GreA/GreB, C-term LQF09_13665 PF03449 Transcription elongation factor, N-terminal LQF09_13670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_13670 PF02743 Cache domain LQF09_13670 PF00672 HAMP domain LQF09_13685 PF00672 HAMP domain LQF09_13685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_13685 PF17200 Single Cache domain 2 LQF09_13710 PF00317 Ribonucleotide reductase, all-alpha domain LQF09_13710 PF02867 Ribonucleotide reductase, barrel domain LQF09_13710 PF03477 ATP cone domain LQF09_13730 PF00005 ABC transporter LQF09_13735 PF02653 Branched-chain amino acid transport system / permease component LQF09_13740 PF02653 Branched-chain amino acid transport system / permease component LQF09_13750 PF00860 Permease family LQF09_13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_13760 PF03466 LysR substrate binding domain LQF09_13765 PF00576 HIUase/Transthyretin family LQF09_13775 PF09349 OHCU decarboxylase LQF09_13775 PF01014 Uricase LQF09_13785 PF03561 Allantoicase repeat LQF09_13790 PF04115 Ureidoglycolate lyase LQF09_13795 PF00990 Diguanylate cyclase, GGDEF domain LQF09_13805 PF00107 Zinc-binding dehydrogenase LQF09_13805 PF08240 Alcohol dehydrogenase GroES-like domain LQF09_13810 PF16925 Tetracyclin repressor-like, C-terminal domain LQF09_13810 PF00440 Bacterial regulatory proteins, tetR family LQF09_13815 PF00392 Bacterial regulatory proteins, gntR family LQF09_13815 PF00155 Aminotransferase class I and II LQF09_13830 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LQF09_13830 PF13746 4Fe-4S dicluster domain LQF09_13830 PF12801 4Fe-4S binding domain LQF09_13835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQF09_13835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQF09_13845 PF01061 ABC-2 type transporter LQF09_13850 PF00005 ABC transporter LQF09_13855 PF03707 Bacterial signalling protein N terminal repeat LQF09_13855 PF00990 Diguanylate cyclase, GGDEF domain LQF09_13855 PF00563 EAL domain LQF09_13860 PF01810 LysE type translocator LQF09_13870 PF00860 Permease family LQF09_13880 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_13880 PF01799 [2Fe-2S] binding domain LQF09_13885 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LQF09_13885 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LQF09_13895 PF01979 Amidohydrolase family LQF09_13900 PF00892 EamA-like transporter family LQF09_13905 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LQF09_13915 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LQF09_13920 PF01177 Asp/Glu/Hydantoin racemase LQF09_13925 PF03561 Allantoicase repeat LQF09_13930 PF04115 Ureidoglycolate lyase LQF09_13935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LQF09_13940 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_13945 PF12911 N-terminal TM domain of oligopeptide transport permease C LQF09_13945 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_13950 PF00005 ABC transporter LQF09_13950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQF09_13955 PF00005 ABC transporter LQF09_13955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQF09_13965 PF02293 AmiS/UreI family transporter LQF09_13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_13970 PF03466 LysR substrate binding domain LQF09_13975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQF09_13975 PF00205 Thiamine pyrophosphate enzyme, central domain LQF09_13975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_13980 PF01261 Xylose isomerase-like TIM barrel LQF09_13985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LQF09_13985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LQF09_13995 PF03928 Haem-degrading LQF09_14000 PF02887 Pyruvate kinase, alpha/beta domain LQF09_14000 PF00224 Pyruvate kinase, barrel domain LQF09_14005 PF00719 Inorganic pyrophosphatase LQF09_14020 PF04055 Radical SAM superfamily LQF09_14020 PF06969 HemN C-terminal domain LQF09_14025 PF00027 Cyclic nucleotide-binding domain LQF09_14025 PF13545 Crp-like helix-turn-helix domain LQF09_14030 PF04247 Invasion gene expression up-regulator, SirB LQF09_14035 PF13545 Crp-like helix-turn-helix domain LQF09_14035 PF00027 Cyclic nucleotide-binding domain LQF09_14040 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LQF09_14040 PF00561 alpha/beta hydrolase fold LQF09_14045 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LQF09_14045 PF00753 Metallo-beta-lactamase superfamily LQF09_14045 PF10996 Beta-Casp domain LQF09_14070 PF13746 4Fe-4S dicluster domain LQF09_14070 PF12801 4Fe-4S binding domain LQF09_14070 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LQF09_14075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_14075 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LQF09_14090 PF00115 Cytochrome C and Quinol oxidase polypeptide I LQF09_14100 PF00403 Heavy-metal-associated domain LQF09_14105 PF00106 short chain dehydrogenase LQF09_14125 PF01925 Sulfite exporter TauE/SafE LQF09_14135 PF03788 LrgA family LQF09_14140 PF04172 LrgB-like family LQF09_14150 PF00009 Elongation factor Tu GTP binding domain LQF09_14150 PF03764 Elongation factor G, domain IV LQF09_14150 PF00679 Elongation factor G C-terminus LQF09_14150 PF14492 Elongation Factor G, domain II LQF09_14165 PF00474 Sodium:solute symporter family LQF09_14190 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding LQF09_14190 PF10518 TAT (twin-arginine translocation) pathway signal sequence LQF09_14190 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_14195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_14200 PF00293 NUDIX domain LQF09_14205 PF00692 dUTPase LQF09_14210 PF02441 Flavoprotein LQF09_14210 PF04127 DNA / pantothenate metabolism flavoprotein LQF09_14215 PF04002 RadC-like JAB domain LQF09_14220 PF00830 Ribosomal L28 family LQF09_14225 PF00471 Ribosomal protein L33 LQF09_14230 PF00313 'Cold-shock' DNA-binding domain LQF09_14235 PF02617 ATP-dependent Clp protease adaptor protein ClpS LQF09_14240 PF02861 Clp amino terminal domain, pathogenicity island component LQF09_14240 PF17871 AAA lid domain LQF09_14240 PF07724 AAA domain (Cdc48 subfamily) LQF09_14240 PF10431 C-terminal, D2-small domain, of ClpB protein LQF09_14240 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_14245 PF03737 Aldolase/RraA LQF09_14250 PF00463 Isocitrate lyase family LQF09_14260 PF00072 Response regulator receiver domain LQF09_14260 PF00486 Transcriptional regulatory protein, C terminal LQF09_14265 PF16527 Two-component sensor protein CpxA, periplasmic domain LQF09_14265 PF00672 HAMP domain LQF09_14265 PF00512 His Kinase A (phospho-acceptor) domain LQF09_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_14270 PF01266 FAD dependent oxidoreductase LQF09_14270 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LQF09_14275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LQF09_14275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LQF09_14280 PF00892 EamA-like transporter family LQF09_14290 PF00581 Rhodanese-like domain LQF09_14295 PF01177 Asp/Glu/Hydantoin racemase LQF09_14300 PF01479 S4 domain LQF09_14300 PF00579 tRNA synthetases class I (W and Y) LQF09_14305 PF04225 Opacity-associated protein A LysM-like domain LQF09_14305 PF01551 Peptidase family M23 LQF09_14310 PF01521 Iron-sulphur cluster biosynthesis LQF09_14315 PF02774 Semialdehyde dehydrogenase, dimerisation domain LQF09_14315 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQF09_14320 PF00380 Ribosomal protein S9/S16 LQF09_14325 PF00572 Ribosomal protein L13 LQF09_14330 PF02566 OsmC-like protein LQF09_14335 PF03232 Ubiquinone biosynthesis protein COQ7 LQF09_14345 PF00293 NUDIX domain LQF09_14350 PF03129 Anticodon binding domain LQF09_14350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQF09_14350 PF04073 Aminoacyl-tRNA editing domain LQF09_14355 PF01464 Transglycosylase SLT domain LQF09_14355 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LQF09_14365 PF00512 His Kinase A (phospho-acceptor) domain LQF09_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_14375 PF00158 Sigma-54 interaction domain LQF09_14375 PF00072 Response regulator receiver domain LQF09_14385 PF01523 Putative modulator of DNA gyrase LQF09_14390 PF00795 Carbon-nitrogen hydrolase LQF09_14400 PF03710 Glutamate-ammonia ligase adenylyltransferase LQF09_14400 PF08335 GlnD PII-uridylyltransferase LQF09_14435 PF00293 NUDIX domain LQF09_14440 PF01063 Amino-transferase class IV LQF09_14460 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LQF09_14465 PF00483 Nucleotidyl transferase LQF09_14470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQF09_14470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQF09_14470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQF09_14470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQF09_14480 PF00580 UvrD/REP helicase N-terminal domain LQF09_14480 PF13361 UvrD-like helicase C-terminal domain LQF09_14490 PF08264 Anticodon-binding domain of tRNA LQF09_14490 PF00133 tRNA synthetases class I (I, L, M and V) LQF09_14490 PF13603 Leucyl-tRNA synthetase, Domain 2 LQF09_14490 PF09334 tRNA synthetases class I (M) LQF09_14500 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LQF09_14500 PF06144 DNA polymerase III, delta subunit LQF09_14505 PF00171 Aldehyde dehydrogenase family LQF09_14510 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LQF09_14510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQF09_14515 PF00589 Phage integrase family LQF09_14515 PF02899 Phage integrase, N-terminal SAM-like domain LQF09_14535 PF02660 Glycerol-3-phosphate acyltransferase LQF09_14540 PF00814 Glycoprotease family LQF09_14545 PF01165 Ribosomal protein S21 LQF09_14550 PF08278 DNA primase DnaG DnaB-binding LQF09_14550 PF10410 DnaB-helicase binding domain of primase LQF09_14550 PF01807 CHC2 zinc finger LQF09_14550 PF08275 DNA primase catalytic core, N-terminal domain LQF09_14555 PF04545 Sigma-70, region 4 LQF09_14555 PF04539 Sigma-70 region 3 LQF09_14555 PF04542 Sigma-70 region 2 LQF09_14555 PF00140 Sigma-70 factor, region 1.2 LQF09_14555 PF03979 Sigma-70 factor, region 1.1 LQF09_14555 PF04546 Sigma-70, non-essential region LQF09_14570 PF03060 Nitronate monooxygenase LQF09_14575 PF00072 Response regulator receiver domain LQF09_14580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LQF09_14590 PF00994 Probable molybdopterin binding domain LQF09_14590 PF18146 Damage-inducible protein CinA KH domain LQF09_14590 PF02464 Competence-damaged protein LQF09_14600 PF00448 SRP54-type protein, GTPase domain LQF09_14600 PF02881 SRP54-type protein, helical bundle domain LQF09_14600 PF02978 Signal peptide binding domain LQF09_14610 PF01595 Cyclin M transmembrane N-terminal domain LQF09_14610 PF03471 Transporter associated domain LQF09_14610 PF00571 CBS domain LQF09_14615 PF00437 Type II/IV secretion system protein LQF09_14615 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQF09_14620 PF00482 Type II secretion system (T2SS), protein F LQF09_14625 PF01478 Type IV leader peptidase family LQF09_14625 PF06750 Bacterial Peptidase A24 N-terminal domain LQF09_14640 PF01336 OB-fold nucleic acid binding domain LQF09_14640 PF02938 GAD domain LQF09_14640 PF00152 tRNA synthetases class II (D, K and N) LQF09_14645 PF02954 Bacterial regulatory protein, Fis family LQF09_14645 PF00072 Response regulator receiver domain LQF09_14645 PF00158 Sigma-54 interaction domain LQF09_14670 PF00696 Amino acid kinase family LQF09_14675 PF02535 ZIP Zinc transporter LQF09_14685 PF00501 AMP-binding enzyme LQF09_14685 PF13193 AMP-binding enzyme C-terminal domain LQF09_14690 PF00881 Nitroreductase family LQF09_14700 PF00689 Cation transporting ATPase, C-terminus LQF09_14700 PF00690 Cation transporter/ATPase, N-terminus LQF09_14705 PF13091 PLD-like domain LQF09_14710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQF09_14710 PF01568 Molydopterin dinucleotide binding domain LQF09_14710 PF00384 Molybdopterin oxidoreductase LQF09_14710 PF04324 BFD-like [2Fe-2S] binding domain LQF09_14720 PF07690 Major Facilitator Superfamily LQF09_14730 PF00005 ABC transporter LQF09_14735 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_14745 PF03861 ANTAR domain LQF09_14745 PF08376 Nitrate and nitrite sensing LQF09_14750 PF01180 Dihydroorotate dehydrogenase LQF09_14755 PF00266 Aminotransferase class-V LQF09_14765 PF04055 Radical SAM superfamily LQF09_14765 PF13186 Iron-sulfur cluster-binding domain LQF09_14770 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LQF09_14775 PF00881 Nitroreductase family LQF09_14780 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_14780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQF09_14780 PF18267 Rubredoxin NAD+ reductase C-terminal domain LQF09_14780 PF04324 BFD-like [2Fe-2S] binding domain LQF09_14780 PF13806 Rieske-like [2Fe-2S] domain LQF09_14780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQF09_14785 PF13806 Rieske-like [2Fe-2S] domain LQF09_14790 PF08032 RNA 2'-O ribose methyltransferase substrate binding LQF09_14790 PF00588 SpoU rRNA Methylase family LQF09_14795 PF17876 Cold shock domain LQF09_14795 PF08461 Ribonuclease R winged-helix domain LQF09_14795 PF08206 Ribonuclease B OB domain LQF09_14795 PF00773 RNB domain LQF09_14795 PF00575 S1 RNA binding domain LQF09_14810 PF00709 Adenylosuccinate synthetase LQF09_14815 PF13393 Histidyl-tRNA synthetase LQF09_14820 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LQF09_14825 PF01145 SPFH domain / Band 7 family LQF09_14830 PF01145 SPFH domain / Band 7 family LQF09_14830 PF12221 Bacterial membrane protein N terminal LQF09_14835 PF01926 50S ribosome-binding GTPase LQF09_14835 PF16360 GTP-binding GTPase Middle Region LQF09_14835 PF13167 GTP-binding GTPase N-terminal LQF09_14840 PF17209 Hfq protein LQF09_14845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LQF09_14845 PF01926 50S ribosome-binding GTPase LQF09_14850 PF13360 PQQ-like domain LQF09_14850 PF13570 PQQ-like domain LQF09_14860 PF03129 Anticodon binding domain LQF09_14860 PF13393 Histidyl-tRNA synthetase LQF09_14865 PF04551 GcpE protein LQF09_14870 PF13464 Domain of unknown function (DUF4115) LQF09_14880 PF04055 Radical SAM superfamily LQF09_14885 PF00334 Nucleoside diphosphate kinase LQF09_14890 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_14895 PF00512 His Kinase A (phospho-acceptor) domain LQF09_14895 PF00989 PAS fold LQF09_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_14900 PF00196 Bacterial regulatory proteins, luxR family LQF09_14900 PF00072 Response regulator receiver domain LQF09_14905 PF01171 PP-loop family LQF09_14905 PF09179 TilS substrate binding domain LQF09_14905 PF11734 TilS substrate C-terminal domain LQF09_14910 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LQF09_14915 PF01027 Inhibitor of apoptosis-promoting Bax1 LQF09_14925 PF03466 LysR substrate binding domain LQF09_14925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_14935 PF02547 Queuosine biosynthesis protein LQF09_14940 PF01702 Queuine tRNA-ribosyltransferase LQF09_14945 PF02699 Preprotein translocase subunit LQF09_14950 PF07549 SecD/SecF GG Motif LQF09_14950 PF13721 SecD export protein N-terminal TM region LQF09_14950 PF02355 Protein export membrane protein LQF09_14955 PF07549 SecD/SecF GG Motif LQF09_14955 PF02355 Protein export membrane protein LQF09_14965 PF08328 Adenylosuccinate lyase C-terminal LQF09_14965 PF00206 Lyase LQF09_14970 PF04379 ApaG domain LQF09_14980 PF00563 EAL domain LQF09_14980 PF00990 Diguanylate cyclase, GGDEF domain LQF09_14980 PF05231 MASE1 LQF09_14980 PF08447 PAS fold LQF09_14980 PF08448 PAS fold LQF09_14980 PF13426 PAS domain LQF09_14990 PF00593 TonB dependent receptor LQF09_14990 PF07715 TonB-dependent Receptor Plug Domain LQF09_14995 PF01960 ArgJ family LQF09_15000 PF01043 SecA preprotein cross-linking domain LQF09_15000 PF07517 SecA DEAD-like domain LQF09_15000 PF02810 SEC-C motif LQF09_15000 PF07516 SecA Wing and Scaffold domain LQF09_15015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LQF09_15020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LQF09_15020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LQF09_15025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LQF09_15025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LQF09_15030 PF02885 Glycosyl transferase family, helical bundle domain LQF09_15035 PF07238 PilZ domain LQF09_15040 PF02678 Pirin LQF09_15040 PF05726 Pirin C-terminal cupin domain LQF09_15045 PF02525 Flavodoxin-like fold LQF09_15050 PF03466 LysR substrate binding domain LQF09_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_15055 PF02600 Disulfide bond formation protein DsbB LQF09_15065 PF00873 AcrB/AcrD/AcrF family LQF09_15080 PF00899 ThiF family LQF09_15090 PF00436 Single-strand binding protein family LQF09_15095 PF07690 Major Facilitator Superfamily LQF09_15100 PF17760 UvrA interaction domain LQF09_15100 PF17755 UvrA DNA-binding domain LQF09_15105 PF16363 GDP-mannose 4,6 dehydratase LQF09_15110 PF01196 Ribosomal protein L17 LQF09_15115 PF01000 RNA polymerase Rpb3/RpoA insert domain LQF09_15115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LQF09_15115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LQF09_15120 PF00163 Ribosomal protein S4/S9 N-terminal domain LQF09_15120 PF01479 S4 domain LQF09_15125 PF00411 Ribosomal protein S11 LQF09_15130 PF00416 Ribosomal protein S13/S18 LQF09_15135 PF00444 Ribosomal protein L36 LQF09_15140 PF01176 Translation initiation factor 1A / IF-1 LQF09_15145 PF00344 SecY translocase LQF09_15150 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LQF09_15155 PF00327 Ribosomal protein L30p/L7e LQF09_15160 PF03719 Ribosomal protein S5, C-terminal domain LQF09_15160 PF00333 Ribosomal protein S5, N-terminal domain LQF09_15165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LQF09_15170 PF00347 Ribosomal protein L6 LQF09_15175 PF00410 Ribosomal protein S8 LQF09_15180 PF00253 Ribosomal protein S14p/S29e LQF09_15185 PF00281 Ribosomal protein L5 LQF09_15185 PF00673 ribosomal L5P family C-terminus LQF09_15190 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LQF09_15195 PF00238 Ribosomal protein L14p/L23e LQF09_15200 PF00366 Ribosomal protein S17 LQF09_15205 PF00831 Ribosomal L29 protein LQF09_15210 PF00252 Ribosomal protein L16p/L10e LQF09_15215 PF00189 Ribosomal protein S3, C-terminal domain LQF09_15215 PF07650 KH domain LQF09_15220 PF00237 Ribosomal protein L22p/L17e LQF09_15225 PF00203 Ribosomal protein S19 LQF09_15230 PF03947 Ribosomal Proteins L2, C-terminal domain LQF09_15230 PF00181 Ribosomal Proteins L2, RNA binding domain LQF09_15235 PF00276 Ribosomal protein L23 LQF09_15240 PF00573 Ribosomal protein L4/L1 family LQF09_15245 PF00297 Ribosomal protein L3 LQF09_15250 PF00338 Ribosomal protein S10p/S20e LQF09_15255 PF03144 Elongation factor Tu domain 2 LQF09_15255 PF03143 Elongation factor Tu C-terminal domain LQF09_15255 PF00009 Elongation factor Tu GTP binding domain LQF09_15260 PF03144 Elongation factor Tu domain 2 LQF09_15260 PF00009 Elongation factor Tu GTP binding domain LQF09_15260 PF03764 Elongation factor G, domain IV LQF09_15260 PF14492 Elongation Factor G, domain II LQF09_15260 PF00679 Elongation factor G C-terminus LQF09_15265 PF00177 Ribosomal protein S7p/S5e LQF09_15270 PF00164 Ribosomal protein S12/S23 LQF09_15275 PF00623 RNA polymerase Rpb1, domain 2 LQF09_15275 PF04997 RNA polymerase Rpb1, domain 1 LQF09_15275 PF04983 RNA polymerase Rpb1, domain 3 LQF09_15275 PF05000 RNA polymerase Rpb1, domain 4 LQF09_15275 PF04998 RNA polymerase Rpb1, domain 5 LQF09_15280 PF04563 RNA polymerase beta subunit LQF09_15280 PF04561 RNA polymerase Rpb2, domain 2 LQF09_15280 PF04565 RNA polymerase Rpb2, domain 3 LQF09_15280 PF10385 RNA polymerase beta subunit external 1 domain LQF09_15280 PF00562 RNA polymerase Rpb2, domain 6 LQF09_15280 PF04560 RNA polymerase Rpb2, domain 7 LQF09_15285 PF00542 Ribosomal protein L7/L12 C-terminal domain LQF09_15285 PF16320 Ribosomal protein L7/L12 dimerisation domain LQF09_15290 PF00466 Ribosomal protein L10 LQF09_15295 PF00687 Ribosomal protein L1p/L10e family LQF09_15300 PF00298 Ribosomal protein L11, RNA binding domain LQF09_15300 PF03946 Ribosomal protein L11, N-terminal domain LQF09_15305 PF02357 Transcription termination factor nusG LQF09_15305 PF00467 KOW motif LQF09_15310 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LQF09_15320 PF00009 Elongation factor Tu GTP binding domain LQF09_15320 PF03144 Elongation factor Tu domain 2 LQF09_15320 PF03143 Elongation factor Tu C-terminal domain LQF09_15340 PF08241 Methyltransferase domain LQF09_15350 PF00072 Response regulator receiver domain LQF09_15350 PF00196 Bacterial regulatory proteins, luxR family LQF09_15360 PF00672 HAMP domain LQF09_15360 PF00512 His Kinase A (phospho-acceptor) domain LQF09_15360 PF01627 Hpt domain LQF09_15360 PF00072 Response regulator receiver domain LQF09_15360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQF09_15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_15370 PF02515 CoA-transferase family III LQF09_15380 PF00005 ABC transporter LQF09_15395 PF02653 Branched-chain amino acid transport system / permease component LQF09_15400 PF00005 ABC transporter LQF09_15400 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_15405 PF00501 AMP-binding enzyme LQF09_15410 PF08447 PAS fold LQF09_15410 PF00990 Diguanylate cyclase, GGDEF domain LQF09_15410 PF00563 EAL domain LQF09_15410 PF08448 PAS fold LQF09_15420 PF13677 Membrane MotB of proton-channel complex MotA/MotB LQF09_15420 PF00691 OmpA family LQF09_15445 PF01642 Methylmalonyl-CoA mutase LQF09_15445 PF02310 B12 binding domain LQF09_15450 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQF09_15450 PF12833 Helix-turn-helix domain LQF09_15455 PF08448 PAS fold LQF09_15455 PF00072 Response regulator receiver domain LQF09_15455 PF13188 PAS domain LQF09_15455 PF00512 His Kinase A (phospho-acceptor) domain LQF09_15455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_15460 PF00486 Transcriptional regulatory protein, C terminal LQF09_15460 PF00072 Response regulator receiver domain LQF09_15470 PF00672 HAMP domain LQF09_15470 PF17200 Single Cache domain 2 LQF09_15470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_15480 PF01451 Low molecular weight phosphotyrosine protein phosphatase LQF09_15485 PF07556 Protein of unknown function (DUF1538) LQF09_15495 PF00005 ABC transporter LQF09_15495 PF00571 CBS domain LQF09_15500 PF00149 Calcineurin-like phosphoesterase LQF09_15500 PF02872 5'-nucleotidase, C-terminal domain LQF09_15505 PF02743 Cache domain LQF09_15505 PF00672 HAMP domain LQF09_15505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_15535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQF09_15535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQF09_15535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQF09_15545 PF00534 Glycosyl transferases group 1 LQF09_15560 PF00534 Glycosyl transferases group 1 LQF09_15570 PF00534 Glycosyl transferases group 1 LQF09_15580 PF01370 NAD dependent epimerase/dehydratase family LQF09_15585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQF09_15585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQF09_15585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQF09_15590 PF00953 Glycosyl transferase family 4 LQF09_15595 PF13614 AAA domain LQF09_15595 PF13807 G-rich domain on putative tyrosine kinase LQF09_15595 PF02706 Chain length determinant protein LQF09_15600 PF02563 Polysaccharide biosynthesis/export protein LQF09_15600 PF10531 SLBB domain LQF09_15600 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LQF09_15625 PF18140 Propionyl-coenzyme A carboxylase BT domain LQF09_15625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQF09_15625 PF02785 Biotin carboxylase C-terminal domain LQF09_15625 PF00289 Biotin carboxylase, N-terminal domain LQF09_15625 PF00364 Biotin-requiring enzyme LQF09_15630 PF01039 Carboxyl transferase domain LQF09_15640 PF01642 Methylmalonyl-CoA mutase LQF09_15640 PF02310 B12 binding domain LQF09_15645 PF00392 Bacterial regulatory proteins, gntR family LQF09_15645 PF07729 FCD domain LQF09_15665 PF00571 CBS domain LQF09_15665 PF03471 Transporter associated domain LQF09_15665 PF01595 Cyclin M transmembrane N-terminal domain LQF09_15670 PF00474 Sodium:solute symporter family LQF09_15675 PF04341 Protein of unknown function, DUF485 LQF09_15680 PF00378 Enoyl-CoA hydratase/isomerase LQF09_15685 PF02321 Outer membrane efflux protein LQF09_15695 PF13426 PAS domain LQF09_15695 PF00990 Diguanylate cyclase, GGDEF domain LQF09_15695 PF00563 EAL domain LQF09_15710 PF00196 Bacterial regulatory proteins, luxR family LQF09_15710 PF00072 Response regulator receiver domain LQF09_15715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_15715 PF00529 HlyD membrane-fusion protein of T1SS LQF09_15720 PF00005 ABC transporter LQF09_15720 PF00664 ABC transporter transmembrane region LQF09_15720 PF03412 Peptidase C39 family LQF09_15735 PF00005 ABC transporter LQF09_15745 PF01475 Ferric uptake regulator family LQF09_15755 PF00005 ABC transporter LQF09_15760 PF00950 ABC 3 transport family LQF09_15765 PF01297 Zinc-uptake complex component A periplasmic LQF09_15780 PF05164 Cell division protein ZapA LQF09_15790 PF00920 Dehydratase family LQF09_15795 PF04337 Protein of unknown function, DUF480 LQF09_15800 PF01790 Prolipoprotein diacylglyceryl transferase LQF09_15815 PF08447 PAS fold LQF09_15815 PF00990 Diguanylate cyclase, GGDEF domain LQF09_15815 PF00563 EAL domain LQF09_15815 PF08448 PAS fold LQF09_15840 PF00210 Ferritin-like domain LQF09_15850 PF01618 MotA/TolQ/ExbB proton channel family LQF09_15855 PF02472 Biopolymer transport protein ExbD/TolR LQF09_15865 PF00034 Cytochrome c LQF09_15865 PF03150 Di-haem cytochrome c peroxidase LQF09_15870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_15875 PF12704 MacB-like periplasmic core domain LQF09_15875 PF02687 FtsX-like permease family LQF09_15875 PF00005 ABC transporter LQF09_15880 PF02321 Outer membrane efflux protein LQF09_15885 PF00593 TonB dependent receptor LQF09_15885 PF07715 TonB-dependent Receptor Plug Domain LQF09_15905 PF01479 S4 domain LQF09_15905 PF00163 Ribosomal protein S4/S9 N-terminal domain LQF09_15925 PF00593 TonB dependent receptor LQF09_15925 PF07715 TonB-dependent Receptor Plug Domain LQF09_15930 PF02514 CobN/Magnesium Chelatase LQF09_15930 PF11965 Domain of unknown function (DUF3479) LQF09_15935 PF00593 TonB dependent receptor LQF09_15935 PF07715 TonB-dependent Receptor Plug Domain LQF09_15955 PF17910 FeoB cytosolic helical domain LQF09_15955 PF07670 Nucleoside recognition LQF09_15955 PF07664 Ferrous iron transport protein B C terminus LQF09_15955 PF02421 Ferrous iron transport protein B LQF09_15960 PF04023 FeoA domain LQF09_16010 PF00005 ABC transporter LQF09_16025 PF07715 TonB-dependent Receptor Plug Domain LQF09_16025 PF00593 TonB dependent receptor LQF09_16030 PF00072 Response regulator receiver domain LQF09_16030 PF00486 Transcriptional regulatory protein, C terminal LQF09_16035 PF13426 PAS domain LQF09_16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_16035 PF00072 Response regulator receiver domain LQF09_16040 PF13193 AMP-binding enzyme C-terminal domain LQF09_16040 PF00501 AMP-binding enzyme LQF09_16060 PF01169 Uncharacterized protein family UPF0016 LQF09_16065 PF00873 AcrB/AcrD/AcrF family LQF09_16080 PF00156 Phosphoribosyl transferase domain LQF09_16130 PF04717 Type VI secretion system, phage-baseplate injector LQF09_16170 PF00591 Glycosyl transferase family, a/b domain LQF09_16170 PF02885 Glycosyl transferase family, helical bundle domain LQF09_16170 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LQF09_16175 PF00571 CBS domain LQF09_16175 PF00478 IMP dehydrogenase / GMP reductase domain LQF09_16190 PF00919 Uncharacterized protein family UPF0004 LQF09_16190 PF04055 Radical SAM superfamily LQF09_16195 PF00501 AMP-binding enzyme LQF09_16195 PF13193 AMP-binding enzyme C-terminal domain LQF09_16200 PF00106 short chain dehydrogenase LQF09_16205 PF02803 Thiolase, C-terminal domain LQF09_16205 PF00108 Thiolase, N-terminal domain LQF09_16210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_16210 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_16210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_16215 PF00378 Enoyl-CoA hydratase/isomerase LQF09_16220 PF00501 AMP-binding enzyme LQF09_16225 PF00005 ABC transporter LQF09_16235 PF02653 Branched-chain amino acid transport system / permease component LQF09_16245 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_16245 PF00005 ABC transporter LQF09_16250 PF12833 Helix-turn-helix domain LQF09_16250 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LQF09_16275 PF04303 PrpF protein LQF09_16280 PF00990 Diguanylate cyclase, GGDEF domain LQF09_16280 PF03707 Bacterial signalling protein N terminal repeat LQF09_16280 PF00563 EAL domain LQF09_16295 PF00005 ABC transporter LQF09_16310 PF00593 TonB dependent receptor LQF09_16310 PF07715 TonB-dependent Receptor Plug Domain LQF09_16325 PF00355 Rieske [2Fe-2S] domain LQF09_16325 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LQF09_16345 PF13411 MerR HTH family regulatory protein LQF09_16350 PF00990 Diguanylate cyclase, GGDEF domain LQF09_16350 PF17151 Periplasmic sensor domain LQF09_16355 PF13462 Thioredoxin LQF09_16360 PF02600 Disulfide bond formation protein DsbB LQF09_16365 PF00270 DEAD/DEAH box helicase LQF09_16365 PF00271 Helicase conserved C-terminal domain LQF09_16370 PF02899 Phage integrase, N-terminal SAM-like domain LQF09_16370 PF00589 Phage integrase family LQF09_16400 PF09828 Chromate resistance exported protein LQF09_16415 PF02583 Metal-sensitive transcriptional repressor LQF09_16425 PF03466 LysR substrate binding domain LQF09_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_16465 PF13007 Transposase C of IS166 homeodomain LQF09_16465 PF13817 IS66 C-terminal element LQF09_16465 PF13005 zinc-finger binding domain of transposase IS66 LQF09_16465 PF03050 Transposase IS66 family LQF09_16470 PF13808 DDE_Tnp_1-associated LQF09_16470 PF01609 Transposase DDE domain LQF09_16475 PF01420 Type I restriction modification DNA specificity domain LQF09_16480 PF12161 HsdM N-terminal domain LQF09_16480 PF02384 N-6 DNA Methylase LQF09_16495 PF08463 EcoEI R protein C-terminal LQF09_16495 PF00271 Helicase conserved C-terminal domain LQF09_16495 PF04851 Type III restriction enzyme, res subunit LQF09_16495 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LQF09_16500 PF00158 Sigma-54 interaction domain LQF09_16500 PF00072 Response regulator receiver domain LQF09_16500 PF02954 Bacterial regulatory protein, Fis family LQF09_16515 PF00816 H-NS histone family LQF09_16520 PF02586 SOS response associated peptidase (SRAP) LQF09_16525 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_16535 PF13007 Transposase C of IS166 homeodomain LQF09_16535 PF03050 Transposase IS66 family LQF09_16535 PF13005 zinc-finger binding domain of transposase IS66 LQF09_16535 PF13817 IS66 C-terminal element LQF09_16560 PF04986 Putative transposase LQF09_16560 PF14319 Transposase zinc-binding domain LQF09_16565 PF13495 Phage integrase, N-terminal SAM-like domain LQF09_16565 PF00589 Phage integrase family LQF09_16570 PF00589 Phage integrase family LQF09_16570 PF13495 Phage integrase, N-terminal SAM-like domain LQF09_16580 PF01380 SIS domain LQF09_16585 PF00132 Bacterial transferase hexapeptide (six repeats) LQF09_16585 PF12804 MobA-like NTP transferase domain LQF09_16590 PF01515 Phosphate acetyl/butaryl transferase LQF09_16595 PF00871 Acetokinase family LQF09_16610 PF00155 Aminotransferase class I and II LQF09_16610 PF00392 Bacterial regulatory proteins, gntR family LQF09_16620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_16620 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LQF09_16625 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LQF09_16630 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_16635 PF01266 FAD dependent oxidoreductase LQF09_16645 PF00392 Bacterial regulatory proteins, gntR family LQF09_16645 PF00155 Aminotransferase class I and II LQF09_16650 PF05690 Thiazole biosynthesis protein ThiG LQF09_16655 PF02597 ThiS family LQF09_16655 PF05690 Thiazole biosynthesis protein ThiG LQF09_16660 PF13667 ThiC-associated domain LQF09_16660 PF01964 Radical SAM ThiC family LQF09_16665 PF03601 Conserved hypothetical protein 698 LQF09_16670 PF00205 Thiamine pyrophosphate enzyme, central domain LQF09_16670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_16670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQF09_16675 PF12556 Cobaltochelatase CobS subunit N terminal LQF09_16675 PF08406 CbbQ/NirQ/NorQ C-terminal LQF09_16675 PF07728 AAA domain (dynein-related subfamily) LQF09_16680 PF06213 Cobalamin biosynthesis protein CobT LQF09_16680 PF11775 Cobalamin biosynthesis protein CobT VWA domain LQF09_16700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_16715 PF05199 GMC oxidoreductase LQF09_16715 PF00732 GMC oxidoreductase LQF09_16720 PF09339 IclR helix-turn-helix domain LQF09_16720 PF01614 Bacterial transcriptional regulator LQF09_16725 PF01925 Sulfite exporter TauE/SafE LQF09_16730 PF00672 HAMP domain LQF09_16730 PF02743 Cache domain LQF09_16730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_16735 PF01515 Phosphate acetyl/butaryl transferase LQF09_16740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_16740 PF00205 Thiamine pyrophosphate enzyme, central domain LQF09_16740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQF09_16745 PF09339 IclR helix-turn-helix domain LQF09_16745 PF01614 Bacterial transcriptional regulator LQF09_16750 PF01266 FAD dependent oxidoreductase LQF09_16760 PF01220 Dehydroquinase class II LQF09_16765 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQF09_16765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LQF09_16770 PF01645 Conserved region in glutamate synthase LQF09_16770 PF01493 GXGXG motif LQF09_16770 PF00310 Glutamine amidotransferases class-II LQF09_16770 PF04898 Glutamate synthase central domain LQF09_16775 PF01966 HD domain LQF09_16775 PF13286 Phosphohydrolase-associated domain LQF09_16780 PF01761 3-dehydroquinate synthase LQF09_16785 PF01202 Shikimate kinase LQF09_16790 PF11741 AMIN domain LQF09_16790 PF00263 Bacterial type II and III secretion system protein LQF09_16790 PF03958 Bacterial type II/III secretion system short domain LQF09_16790 PF07660 Secretin and TonB N terminus short domain LQF09_16805 PF05137 Fimbrial assembly protein (PilN) LQF09_16810 PF11104 Type IV pilus assembly protein PilM; LQF09_16815 PF17092 Penicillin-binding protein OB-like domain LQF09_16815 PF00912 Transglycosylase LQF09_16815 PF00905 Penicillin binding protein transpeptidase domain LQF09_16820 PF01491 Frataxin-like domain LQF09_16830 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LQF09_16830 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LQF09_16840 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LQF09_16850 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LQF09_16855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LQF09_16860 PF01040 UbiA prenyltransferase family LQF09_16865 PF04345 Chorismate lyase LQF09_16870 PF00270 DEAD/DEAH box helicase LQF09_16870 PF00271 Helicase conserved C-terminal domain LQF09_16870 PF17191 RecG wedge domain LQF09_16875 PF01042 Endoribonuclease L-PSP LQF09_16880 PF02623 FliW protein LQF09_16900 PF00970 Oxidoreductase FAD-binding domain LQF09_16900 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_16900 PF00175 Oxidoreductase NAD-binding domain LQF09_16905 PF02508 Rnf-Nqr subunit, membrane protein LQF09_16910 PF02508 Rnf-Nqr subunit, membrane protein LQF09_16915 PF04205 FMN-binding domain LQF09_16920 PF03116 NQR2, RnfD, RnfE family LQF09_16925 PF11973 NQRA C-terminal domain LQF09_16925 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LQF09_16930 PF00108 Thiolase, N-terminal domain LQF09_16930 PF02803 Thiolase, C-terminal domain LQF09_16935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQF09_16935 PF00378 Enoyl-CoA hydratase/isomerase LQF09_16935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQF09_16940 PF03061 Thioesterase superfamily LQF09_16945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LQF09_16945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LQF09_16945 PF00378 Enoyl-CoA hydratase/isomerase LQF09_16950 PF00108 Thiolase, N-terminal domain LQF09_16950 PF02803 Thiolase, C-terminal domain LQF09_16955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_16955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_16955 PF09317 Domain of unknown function (DUF1974) LQF09_16960 PF09209 Tetracyclin repressor-like, C-terminal domain LQF09_16960 PF00440 Bacterial regulatory proteins, tetR family LQF09_16975 PF07044 Protein of unknown function (DUF1329) LQF09_16985 PF00664 ABC transporter transmembrane region LQF09_16985 PF00005 ABC transporter LQF09_17000 PF00710 Asparaginase, N-terminal LQF09_17000 PF17763 Glutaminase/Asparaginase C-terminal domain LQF09_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_17005 PF03466 LysR substrate binding domain LQF09_17010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQF09_17010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQF09_17020 PF01507 Phosphoadenosine phosphosulfate reductase family LQF09_17030 PF01507 Phosphoadenosine phosphosulfate reductase family LQF09_17035 PF00009 Elongation factor Tu GTP binding domain LQF09_17045 PF01479 S4 domain LQF09_17055 PF16200 C-terminal region of band_7 LQF09_17055 PF01145 SPFH domain / Band 7 family LQF09_17065 PF07724 AAA domain (Cdc48 subfamily) LQF09_17065 PF10431 C-terminal, D2-small domain, of ClpB protein LQF09_17065 PF00004 ATPase family associated with various cellular activities (AAA) LQF09_17070 PF00227 Proteasome subunit LQF09_17080 PF03061 Thioesterase superfamily LQF09_17085 PF01618 MotA/TolQ/ExbB proton channel family LQF09_17090 PF02472 Biopolymer transport protein ExbD/TolR LQF09_17100 PF07676 WD40-like Beta Propeller Repeat LQF09_17100 PF04052 TolB amino-terminal domain LQF09_17105 PF00691 OmpA family LQF09_17115 PF04055 Radical SAM superfamily LQF09_17120 PF06508 Queuosine biosynthesis protein QueC LQF09_17135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LQF09_17140 PF01176 Translation initiation factor 1A / IF-1 LQF09_17145 PF01738 Dienelactone hydrolase family LQF09_17160 PF03668 P-loop ATPase protein family LQF09_17165 PF01235 Sodium:alanine symporter family LQF09_17185 PF00171 Aldehyde dehydrogenase family LQF09_17200 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit LQF09_17215 PF14525 AraC-binding-like domain LQF09_17215 PF12833 Helix-turn-helix domain LQF09_17230 PF00664 ABC transporter transmembrane region LQF09_17230 PF00005 ABC transporter LQF09_17235 PF16123 Hydroxyacylglutathione hydrolase C-terminus LQF09_17235 PF00753 Metallo-beta-lactamase superfamily LQF09_17250 PF00682 HMGL-like LQF09_17255 PF00501 AMP-binding enzyme LQF09_17255 PF13193 AMP-binding enzyme C-terminal domain LQF09_17260 PF00364 Biotin-requiring enzyme LQF09_17260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQF09_17260 PF00289 Biotin carboxylase, N-terminal domain LQF09_17260 PF02785 Biotin carboxylase C-terminal domain LQF09_17270 PF01039 Carboxyl transferase domain LQF09_17275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_17275 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_17275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_17280 PF02311 AraC-like ligand binding domain LQF09_17280 PF12833 Helix-turn-helix domain LQF09_17285 PF03061 Thioesterase superfamily LQF09_17330 PF01590 GAF domain LQF09_17330 PF02954 Bacterial regulatory protein, Fis family LQF09_17330 PF00158 Sigma-54 interaction domain LQF09_17340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LQF09_17340 PF13360 PQQ-like domain LQF09_17360 PF00196 Bacterial regulatory proteins, luxR family LQF09_17360 PF00072 Response regulator receiver domain LQF09_17365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_17365 PF07730 Histidine kinase LQF09_17365 PF05231 MASE1 LQF09_17375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_17375 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_17375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_17380 PF00108 Thiolase, N-terminal domain LQF09_17380 PF02803 Thiolase, C-terminal domain LQF09_17385 PF00484 Carbonic anhydrase LQF09_17395 PF13411 MerR HTH family regulatory protein LQF09_17405 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LQF09_17405 PF00561 alpha/beta hydrolase fold LQF09_17415 PF01497 Periplasmic binding protein LQF09_17435 PF01323 DSBA-like thioredoxin domain LQF09_17445 PF00750 tRNA synthetases class I (R) LQF09_17445 PF05746 DALR anticodon binding domain LQF09_17445 PF03485 Arginyl tRNA synthetase N terminal domain LQF09_17450 PF03109 ABC1 family LQF09_17460 PF00202 Aminotransferase class-III LQF09_17475 PF13677 Membrane MotB of proton-channel complex MotA/MotB LQF09_17475 PF00691 OmpA family LQF09_17480 PF01618 MotA/TolQ/ExbB proton channel family LQF09_17485 PF01136 Peptidase family U32 LQF09_17490 PF01136 Peptidase family U32 LQF09_17495 PF02036 SCP-2 sterol transfer family LQF09_17500 PF00586 AIR synthase related protein, N-terminal domain LQF09_17500 PF02769 AIR synthase related protein, C-terminal domain LQF09_17505 PF04608 Phosphatidylglycerophosphatase A LQF09_17510 PF02464 Competence-damaged protein LQF09_17515 PF00154 recA bacterial DNA recombination protein LQF09_17520 PF02631 RecX family LQF09_17525 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_17525 PF00005 ABC transporter LQF09_17530 PF00309 Sigma-54 factor, Activator interacting domain (AID) LQF09_17530 PF04963 Sigma-54 factor, core binding domain LQF09_17530 PF04552 Sigma-54, DNA binding domain LQF09_17535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LQF09_17540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LQF09_17545 PF07475 HPr Serine kinase C-terminal domain LQF09_17545 PF02603 HPr Serine kinase N terminus LQF09_17555 PF00291 Pyridoxal-phosphate dependent enzyme LQF09_17555 PF00585 C-terminal regulatory domain of Threonine dehydratase LQF09_17560 PF01812 5-formyltetrahydrofolate cyclo-ligase family LQF09_17565 PF14718 Soluble lytic murein transglycosylase L domain LQF09_17565 PF01464 Transglycosylase SLT domain LQF09_17570 PF01370 NAD dependent epimerase/dehydratase family LQF09_17580 PF01966 HD domain LQF09_17580 PF01743 Poly A polymerase head domain LQF09_17580 PF12627 Probable RNA and SrmB- binding site of polymerase A LQF09_17585 PF12697 Alpha/beta hydrolase family LQF09_17600 PF01171 PP-loop family LQF09_17625 PF02146 Sir2 family LQF09_17630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQF09_17630 PF00384 Molybdopterin oxidoreductase LQF09_17630 PF01568 Molydopterin dinucleotide binding domain LQF09_17640 PF00156 Phosphoribosyl transferase domain LQF09_17645 PF03372 Endonuclease/Exonuclease/phosphatase family LQF09_17655 PF05957 Bacterial protein of unknown function (DUF883) LQF09_17670 PF00860 Permease family LQF09_17680 PF00156 Phosphoribosyl transferase domain LQF09_17690 PF01070 FMN-dependent dehydrogenase LQF09_17695 PF08859 DGC domain LQF09_17700 PF03358 NADPH-dependent FMN reductase LQF09_17705 PF01292 Prokaryotic cytochrome b561 LQF09_17715 PF00962 Adenosine/AMP deaminase LQF09_17720 PF04955 HupE / UreJ protein LQF09_17725 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQF09_17730 PF01730 UreF LQF09_17735 PF05194 UreE urease accessory protein, C-terminal domain LQF09_17735 PF02814 UreE urease accessory protein, N-terminal domain LQF09_17740 PF00449 Urease alpha-subunit, N-terminal domain LQF09_17740 PF01979 Amidohydrolase family LQF09_17745 PF00699 Urease beta subunit LQF09_17750 PF00547 Urease, gamma subunit LQF09_17755 PF01774 UreD urease accessory protein LQF09_17760 PF00171 Aldehyde dehydrogenase family LQF09_17765 PF01557 Fumarylacetoacetate (FAA) hydrolase family LQF09_17780 PF13380 CoA binding domain LQF09_17780 PF13607 Succinyl-CoA ligase like flavodoxin domain LQF09_17785 PF00378 Enoyl-CoA hydratase/isomerase LQF09_17800 PF01258 Prokaryotic dksA/traR C4-type zinc finger LQF09_17810 PF00072 Response regulator receiver domain LQF09_17815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_17815 PF00512 His Kinase A (phospho-acceptor) domain LQF09_17815 PF00072 Response regulator receiver domain LQF09_17815 PF01627 Hpt domain LQF09_17835 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_17835 PF00005 ABC transporter LQF09_17840 PF00005 ABC transporter LQF09_17845 PF03069 Acetamidase/Formamidase family LQF09_17850 PF09723 Zinc ribbon domain LQF09_17855 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LQF09_17885 PF00795 Carbon-nitrogen hydrolase LQF09_17890 PF08406 CbbQ/NirQ/NorQ C-terminal LQF09_17890 PF07728 AAA domain (dynein-related subfamily) LQF09_17895 PF00092 von Willebrand factor type A domain LQF09_17905 PF01565 FAD binding domain LQF09_17905 PF02913 FAD linked oxidases, C-terminal domain LQF09_17910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LQF09_17910 PF01565 FAD binding domain LQF09_17930 PF03466 LysR substrate binding domain LQF09_17930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_17940 PF00579 tRNA synthetases class I (W and Y) LQF09_17950 PF00563 EAL domain LQF09_17950 PF00990 Diguanylate cyclase, GGDEF domain LQF09_17950 PF03707 Bacterial signalling protein N terminal repeat LQF09_17965 PF07075 Protein of unknown function (DUF1343) LQF09_17970 PF01740 STAS domain LQF09_17970 PF00916 Sulfate permease family LQF09_17975 PF14572 Phosphoribosyl synthetase-associated domain LQF09_17975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LQF09_17990 PF03466 LysR substrate binding domain LQF09_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_17995 PF00085 Thioredoxin LQF09_18000 PF00990 Diguanylate cyclase, GGDEF domain LQF09_18000 PF00563 EAL domain LQF09_18000 PF03707 Bacterial signalling protein N terminal repeat LQF09_18005 PF02607 B12 binding domain LQF09_18005 PF02965 Vitamin B12 dependent methionine synthase, activation domain LQF09_18005 PF00809 Pterin binding enzyme LQF09_18005 PF02574 Homocysteine S-methyltransferase LQF09_18005 PF02310 B12 binding domain LQF09_18020 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQF09_18025 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_18030 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_18035 PF00005 ABC transporter LQF09_18040 PF13458 Periplasmic binding protein LQF09_18045 PF02653 Branched-chain amino acid transport system / permease component LQF09_18045 PF11862 Domain of unknown function (DUF3382) LQF09_18050 PF02653 Branched-chain amino acid transport system / permease component LQF09_18055 PF00005 ABC transporter LQF09_18060 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_18060 PF00005 ABC transporter LQF09_18065 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_18065 PF00005 ABC transporter LQF09_18070 PF00005 ABC transporter LQF09_18080 PF07690 Major Facilitator Superfamily LQF09_18085 PF13335 Magnesium chelatase, subunit ChlI C-terminal LQF09_18085 PF01078 Magnesium chelatase, subunit ChlI LQF09_18100 PF00543 Nitrogen regulatory protein P-II LQF09_18105 PF00909 Ammonium Transporter Family LQF09_18110 PF00543 Nitrogen regulatory protein P-II LQF09_18115 PF00909 Ammonium Transporter Family LQF09_18125 PF03061 Thioesterase superfamily LQF09_18130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LQF09_18130 PF02770 Acyl-CoA dehydrogenase, middle domain LQF09_18130 PF12806 Acetyl-CoA dehydrogenase C-terminal like LQF09_18130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LQF09_18135 PF00696 Amino acid kinase family LQF09_18135 PF13840 ACT domain LQF09_18140 PF01842 ACT domain LQF09_18140 PF00551 Formyl transferase LQF09_18150 PF01966 HD domain LQF09_18150 PF11871 Domain of unknown function (DUF3391) LQF09_18155 PF00005 ABC transporter LQF09_18155 PF12848 ABC transporter LQF09_18165 PF01323 DSBA-like thioredoxin domain LQF09_18170 PF00892 EamA-like transporter family LQF09_18185 PF02424 ApbE family LQF09_18190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LQF09_18190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LQF09_18200 PF01037 Lrp/AsnC ligand binding domain LQF09_18205 PF01619 Proline dehydrogenase LQF09_18205 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LQF09_18205 PF14850 DNA-binding domain of Proline dehydrogenase LQF09_18205 PF00171 Aldehyde dehydrogenase family LQF09_18210 PF13458 Periplasmic binding protein LQF09_18215 PF02653 Branched-chain amino acid transport system / permease component LQF09_18220 PF11862 Domain of unknown function (DUF3382) LQF09_18220 PF02653 Branched-chain amino acid transport system / permease component LQF09_18225 PF00005 ABC transporter LQF09_18225 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQF09_18230 PF00005 ABC transporter LQF09_18240 PF00563 EAL domain LQF09_18240 PF00990 Diguanylate cyclase, GGDEF domain LQF09_18240 PF03707 Bacterial signalling protein N terminal repeat LQF09_18245 PF00672 HAMP domain LQF09_18245 PF17200 Single Cache domain 2 LQF09_18245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_18250 PF00196 Bacterial regulatory proteins, luxR family LQF09_18250 PF00072 Response regulator receiver domain LQF09_18255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_18255 PF05231 MASE1 LQF09_18255 PF07730 Histidine kinase LQF09_18265 PF07669 Eco57I restriction-modification methylase LQF09_18265 PF12950 TaqI-like C-terminal specificity domain LQF09_18270 PF08241 Methyltransferase domain LQF09_18275 PF12697 Alpha/beta hydrolase family LQF09_18280 PF00501 AMP-binding enzyme LQF09_18280 PF14535 AMP-binding enzyme C-terminal domain LQF09_18285 PF01144 Coenzyme A transferase LQF09_18290 PF00580 UvrD/REP helicase N-terminal domain LQF09_18290 PF13361 UvrD-like helicase C-terminal domain LQF09_18295 PF00990 Diguanylate cyclase, GGDEF domain LQF09_18310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_18310 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LQF09_18315 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_18315 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LQF09_18320 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_18330 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LQF09_18330 PF18381 YcaO cyclodehydratase C-terminal domain LQF09_18340 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_18345 PF00005 ABC transporter LQF09_18345 PF03459 TOBE domain LQF09_18350 PF13538 UvrD-like helicase C-terminal domain LQF09_18355 PF12705 PD-(D/E)XK nuclease superfamily LQF09_18355 PF00580 UvrD/REP helicase N-terminal domain LQF09_18355 PF13361 UvrD-like helicase C-terminal domain LQF09_18365 PF13380 CoA binding domain LQF09_18370 PF01053 Cys/Met metabolism PLP-dependent enzyme LQF09_18380 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_18385 PF00528 Binding-protein-dependent transport system inner membrane component LQF09_18390 PF00005 ABC transporter LQF09_18390 PF12857 TOBE-like domain LQF09_18395 PF03466 LysR substrate binding domain LQF09_18395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_18405 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LQF09_18405 PF02896 PEP-utilising enzyme, TIM barrel domain LQF09_18405 PF00391 PEP-utilising enzyme, mobile domain LQF09_18415 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LQF09_18415 PF00561 alpha/beta hydrolase fold LQF09_18425 PF03707 Bacterial signalling protein N terminal repeat LQF09_18425 PF00990 Diguanylate cyclase, GGDEF domain LQF09_18425 PF00563 EAL domain LQF09_18430 PF12729 Four helix bundle sensory module for signal transduction LQF09_18430 PF00672 HAMP domain LQF09_18430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_18445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQF09_18445 PF00672 HAMP domain LQF09_18445 PF12729 Four helix bundle sensory module for signal transduction LQF09_18460 PF03976 Polyphosphate kinase 2 (PPK2) LQF09_18465 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LQF09_18470 PF09186 Domain of unknown function (DUF1949) LQF09_18470 PF01205 Uncharacterized protein family UPF0029 LQF09_18475 PF17946 RecC C-terminal domain LQF09_18485 PF01011 PQQ enzyme repeat LQF09_18500 PF00676 Dehydrogenase E1 component LQF09_18505 PF02780 Transketolase, C-terminal domain LQF09_18505 PF02779 Transketolase, pyrimidine binding domain LQF09_18510 PF01597 Glycine cleavage H-protein LQF09_18515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LQF09_18515 PF00364 Biotin-requiring enzyme LQF09_18515 PF02817 e3 binding domain LQF09_18530 PF05199 GMC oxidoreductase LQF09_18530 PF00732 GMC oxidoreductase LQF09_18540 PF01590 GAF domain LQF09_18540 PF02954 Bacterial regulatory protein, Fis family LQF09_18540 PF00158 Sigma-54 interaction domain LQF09_18555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQF09_18555 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LQF09_18555 PF10371 Domain of unknown function LQF09_18555 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LQF09_18555 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LQF09_18565 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LQF09_18565 PF01926 50S ribosome-binding GTPase LQF09_18575 PF01814 Hemerythrin HHE cation binding domain LQF09_18585 PF02321 Outer membrane efflux protein LQF09_18585 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LQF09_18590 PF00873 AcrB/AcrD/AcrF family LQF09_18595 PF00529 HlyD membrane-fusion protein of T1SS LQF09_18595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LQF09_18600 PF13977 BetI-type transcriptional repressor, C-terminal LQF09_18600 PF00440 Bacterial regulatory proteins, tetR family LQF09_18605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LQF09_18615 PF03480 Bacterial extracellular solute-binding protein, family 7 LQF09_18625 PF00578 AhpC/TSA family LQF09_18640 PF00175 Oxidoreductase NAD-binding domain LQF09_18640 PF00111 2Fe-2S iron-sulfur cluster binding domain LQF09_18640 PF00970 Oxidoreductase FAD-binding domain LQF09_18645 PF03707 Bacterial signalling protein N terminal repeat LQF09_18645 PF00990 Diguanylate cyclase, GGDEF domain LQF09_18645 PF00563 EAL domain LQF09_18655 PF12161 HsdM N-terminal domain LQF09_18655 PF02384 N-6 DNA Methylase LQF09_18660 PF17761 DUF1016 N-terminal domain LQF09_18660 PF06250 YhcG PDDEXK nuclease domain LQF09_18675 PF13808 DDE_Tnp_1-associated LQF09_18675 PF01609 Transposase DDE domain LQF09_18695 PF00005 ABC transporter LQF09_18700 PF01595 Cyclin M transmembrane N-terminal domain LQF09_18700 PF00571 CBS domain LQF09_18705 PF03471 Transporter associated domain LQF09_18705 PF01595 Cyclin M transmembrane N-terminal domain LQF09_18705 PF00571 CBS domain LQF09_18710 PF01594 AI-2E family transporter LQF09_18715 PF00730 HhH-GPD superfamily base excision DNA repair protein LQF09_18715 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain LQF09_18720 PF03466 LysR substrate binding domain LQF09_18720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_18725 PF08240 Alcohol dehydrogenase GroES-like domain LQF09_18725 PF00107 Zinc-binding dehydrogenase LQF09_18730 PF00756 Putative esterase LQF09_18745 PF05643 Putative bacterial lipoprotein (DUF799) LQF09_18755 PF03783 Curli production assembly/transport component CsgG LQF09_18760 PF01627 Hpt domain LQF09_18760 PF00072 Response regulator receiver domain LQF09_18760 PF00512 His Kinase A (phospho-acceptor) domain LQF09_18760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_18760 PF00672 HAMP domain LQF09_18760 PF17149 Periplasmic sensor domain found in signal transduction proteins LQF09_18765 PF03707 Bacterial signalling protein N terminal repeat LQF09_18765 PF00990 Diguanylate cyclase, GGDEF domain LQF09_18765 PF00563 EAL domain LQF09_18770 PF00141 Peroxidase LQF09_18775 PF13476 AAA domain LQF09_18780 PF12320 Type 5 capsule protein repressor C-terminal domain LQF09_18780 PF00149 Calcineurin-like phosphoesterase LQF09_18790 PF05384 Sensor protein DegS LQF09_18790 PF07730 Histidine kinase LQF09_18790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_18795 PF00072 Response regulator receiver domain LQF09_18795 PF01339 CheB methylesterase LQF09_18800 PF00196 Bacterial regulatory proteins, luxR family LQF09_18800 PF00072 Response regulator receiver domain LQF09_18810 PF05532 CsbD-like LQF09_18815 PF00005 ABC transporter LQF09_18815 PF12848 ABC transporter LQF09_18830 PF02028 BCCT, betaine/carnitine/choline family transporter LQF09_18835 PF03610 PTS system fructose IIA component LQF09_18835 PF03830 PTS system sorbose subfamily IIB component LQF09_18840 PF00381 PTS HPr component phosphorylation site LQF09_18845 PF05524 PEP-utilising enzyme, N-terminal LQF09_18845 PF02896 PEP-utilising enzyme, TIM barrel domain LQF09_18845 PF00391 PEP-utilising enzyme, mobile domain LQF09_18855 PF13193 AMP-binding enzyme C-terminal domain LQF09_18855 PF00501 AMP-binding enzyme LQF09_18875 PF13356 Arm DNA-binding domain LQF09_18875 PF00589 Phage integrase family LQF09_18875 PF14659 Phage integrase, N-terminal SAM-like domain LQF09_18955 PF00690 Cation transporter/ATPase, N-terminus LQF09_18955 PF00689 Cation transporting ATPase, C-terminus LQF09_18975 PF01609 Transposase DDE domain LQF09_18975 PF13808 DDE_Tnp_1-associated LQF09_18980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQF09_18980 PF03466 LysR substrate binding domain LQF09_19005 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LQF09_19005 PF01348 Type II intron maturase LQF09_19010 PF00563 EAL domain LQF09_19010 PF00990 Diguanylate cyclase, GGDEF domain LQF09_19010 PF03707 Bacterial signalling protein N terminal repeat LQF09_19010 PF13188 PAS domain LQF09_19025 PF01435 Peptidase family M48 LQF09_19030 PF01743 Poly A polymerase head domain LQF09_19030 PF00571 CBS domain LQF09_19060 PF00501 AMP-binding enzyme LQF09_19060 PF13193 AMP-binding enzyme C-terminal domain LQF09_19070 PF00501 AMP-binding enzyme LQF09_19075 PF01569 PAP2 superfamily LQF09_19080 PF00872 Transposase, Mutator family LQF09_19090 PF00873 AcrB/AcrD/AcrF family LQF09_19140 PF01131 DNA topoisomerase LQF09_19140 PF01751 Toprim domain LQF09_19190 PF13614 AAA domain LQF09_19215 PF01425 Amidase LQF09_19230 PF00196 Bacterial regulatory proteins, luxR family LQF09_19230 PF03472 Autoinducer binding domain LQF09_19240 PF01037 Lrp/AsnC ligand binding domain LQF09_19245 PF01266 FAD dependent oxidoreductase LQF09_19250 PF01168 Alanine racemase, N-terminal domain LQF09_19250 PF00842 Alanine racemase, C-terminal domain LQF09_19260 PF03918 Cytochrome C biogenesis protein LQF09_19265 PF08534 Redoxin LQF09_19270 PF01578 Cytochrome C assembly protein LQF09_19270 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LQF09_19275 PF03100 CcmE LQF09_19285 PF01578 Cytochrome C assembly protein LQF09_19290 PF03379 CcmB protein LQF09_19295 PF00005 ABC transporter LQF09_19300 PF03264 NapC/NirT cytochrome c family, N-terminal region LQF09_19305 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LQF09_19310 PF13237 4Fe-4S dicluster domain LQF09_19310 PF12801 4Fe-4S binding domain LQF09_19315 PF12800 4Fe-4S binding domain LQF09_19315 PF12838 4Fe-4S dicluster domain LQF09_19320 PF00384 Molybdopterin oxidoreductase LQF09_19320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LQF09_19320 PF01568 Molydopterin dinucleotide binding domain LQF09_19330 PF13187 4Fe-4S dicluster domain LQF09_19330 PF00037 4Fe-4S binding domain LQF09_19330 PF12800 4Fe-4S binding domain LQF09_19335 PF00196 Bacterial regulatory proteins, luxR family LQF09_19335 PF00072 Response regulator receiver domain LQF09_19340 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LQF09_19340 PF07730 Histidine kinase LQF09_19340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_19340 PF00672 HAMP domain LQF09_19350 PF14480 DNA polymerase III polC-type N-terminus I LQF09_19350 PF14579 Helix-hairpin-helix motif LQF09_19350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQF09_19350 PF00929 Exonuclease LQF09_19350 PF02811 PHP domain LQF09_19350 PF11490 DNA polymerase III polC-type N-terminus II LQF09_19350 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQF09_19360 PF04607 Region found in RelA / SpoT proteins LQF09_19360 PF13291 ACT domain LQF09_19360 PF02824 TGS domain LQF09_19365 PF01192 RNA polymerase Rpb6 LQF09_19370 PF00625 Guanylate kinase LQF09_19375 PF03755 YicC-like family, N-terminal region LQF09_19375 PF08340 Domain of unknown function (DUF1732) LQF09_19380 PF00069 Protein kinase domain LQF09_19380 PF00805 Pentapeptide repeats (8 copies) LQF09_19390 PF03725 3' exoribonuclease family, domain 2 LQF09_19390 PF01138 3' exoribonuclease family, domain 1 LQF09_19395 PF01725 Ham1 family LQF09_19400 PF04055 Radical SAM superfamily LQF09_19400 PF06969 HemN C-terminal domain LQF09_19425 PF02254 TrkA-N domain LQF09_19425 PF02080 TrkA-C domain LQF09_19430 PF02386 Cation transport protein LQF09_19440 PF00561 alpha/beta hydrolase fold LQF09_19455 PF01161 Phosphatidylethanolamine-binding protein LQF09_19460 PF01343 Peptidase family S49 LQF09_19465 PF02390 Putative methyltransferase LQF09_19470 PF05690 Thiazole biosynthesis protein ThiG LQF09_19475 PF05690 Thiazole biosynthesis protein ThiG LQF09_19475 PF02597 ThiS family LQF09_19480 PF00561 alpha/beta hydrolase fold LQF09_19485 PF00561 alpha/beta hydrolase fold LQF09_19485 PF07021 Methionine biosynthesis protein MetW LQF09_19495 PF03707 Bacterial signalling protein N terminal repeat LQF09_19495 PF00990 Diguanylate cyclase, GGDEF domain LQF09_19495 PF00563 EAL domain LQF09_19500 PF07690 Major Facilitator Superfamily LQF09_19520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_19525 PF00072 Response regulator receiver domain LQF09_19525 PF00486 Transcriptional regulatory protein, C terminal LQF09_19540 PF00480 ROK family LQF09_19545 PF01966 HD domain LQF09_19550 PF18074 Primosomal protein N C-terminal domain LQF09_19550 PF00270 DEAD/DEAH box helicase LQF09_19550 PF00271 Helicase conserved C-terminal domain LQF09_19550 PF17764 3′ DNA-binding domain (3′BD) LQF09_19550 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LQF09_19555 PF01208 Uroporphyrinogen decarboxylase (URO-D) LQF09_19560 PF02386 Cation transport protein LQF09_19565 PF02080 TrkA-C domain LQF09_19565 PF02254 TrkA-N domain LQF09_19570 PF02954 Bacterial regulatory protein, Fis family LQF09_19570 PF00072 Response regulator receiver domain LQF09_19570 PF00158 Sigma-54 interaction domain LQF09_19575 PF00989 PAS fold LQF09_19575 PF00672 HAMP domain LQF09_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQF09_19575 PF00512 His Kinase A (phospho-acceptor) domain LQF09_19585 PF01029 NusB family LQF09_19585 PF01189 16S rRNA methyltransferase RsmB/F LQF09_19590 PF17284 Spermidine synthase tetramerisation domain LQF09_19595 PF02675 S-adenosylmethionine decarboxylase LQF09_19600 PF01925 Sulfite exporter TauE/SafE LQF09_19605 PF01926 50S ribosome-binding GTPase LQF09_19605 PF12631 MnmE helical domain LQF09_19605 PF10396 GTP-binding protein TrmE N-terminus LQF09_19610 PF14849 YidC periplasmic domain LQF09_19610 PF02096 60Kd inner membrane protein LQF09_19615 PF01809 Putative membrane protein insertion efficiency factor LQF09_19620 PF00825 Ribonuclease P LQF09_19625 PF00468 Ribosomal protein L34