TOT_010000004	SM00382	ATPases associated with a variety of cellular activities
TOT_010000006	SM00382	ATPases associated with a variety of cellular activities
TOT_010000008	SM00382	ATPases associated with a variety of cellular activities
TOT_010000024	SM00662	RNA polymerases D
TOT_010000104	SM00382	ATPases associated with a variety of cellular activities
TOT_010000195	SM00297	bromo domain
TOT_010000317	SM00361	RNA recognition motif
TOT_010000319	SM01408	TOT_010000319
TOT_010000326	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_010000329	SM01240	TOT_010000329
TOT_010000355	SM00955	TOT_010000355
TOT_010000406	SM00297	bromo domain
TOT_010000420	SM00240	Forkhead associated domain
TOT_010000420	SM00744	The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
TOT_010000425	SM00320	WD40 repeats
TOT_010000425	SM00500	Splicing Factor Motif, present in Prp18 and Pr04
TOT_010000465	SM00382	ATPases associated with a variety of cellular activities
TOT_010000517	SM00273	Epsin N-terminal homology (ENTH) domain
TOT_010000551	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_010000559	SM00360	RNA recognition motif
TOT_010000611	SM00382	ATPases associated with a variety of cellular activities
TOT_010000612	SM00382	ATPases associated with a variety of cellular activities
TOT_010000624	SM00213	Ubiquitin homologues
TOT_010000690	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_010000745	SM00268	Actin
TOT_010000764	SM00504	Modified RING finger domain
TOT_010000787	SM00355	zinc finger
TOT_010000805	SM00443	glycine rich nucleic binding domain
TOT_010000815	SM00298	Chromatin organization modifier domain
TOT_010000815	SM00487	DEAD-like helicases superfamily
TOT_010000815	SM00490	helicase superfamily c-terminal domain
TOT_010000827	SM00360	RNA recognition motif
TOT_010000832	SM01376	TOT_010000832
TOT_010000894	SM00360	RNA recognition motif
TOT_010000894	SM00517	C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein.
TOT_010000898	SM00651	snRNP Sm proteins
TOT_010000955	SM00577	catalytic domain of ctd-like phosphatases
TOT_010001016	SM00213	Ubiquitin homologues
TOT_010001016	SM01377	TOT_010001016
TOT_010001043	SM00105	Putative GTP-ase activating proteins for the small GTPase, ARF
TOT_010001128	SM00233	Pleckstrin homology domain.
TOT_010001145	SM00173	Ras subfamily of RAS small GTPases
TOT_010001145	SM00174	Rho (Ras homology) subfamily of Ras-like small GTPases
TOT_010001145	SM00175	Rab subfamily of small GTPases
TOT_010001145	SM00176	Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases
TOT_010001176	SM00382	ATPases associated with a variety of cellular activities
TOT_010001184	SM01375	TOT_010001184
TOT_010001225	SM00316	Ribosomal protein S1-like RNA-binding domain
TOT_010001264	SM00146	Phosphoinositide 3-kinase, catalytic domain
TOT_010001279	SM00831	Cation transporter/ATPase, N-terminus
TOT_010001288	SM00931	NOSIC (NUC001) domain
TOT_010001295	SM00146	Phosphoinositide 3-kinase, catalytic domain
TOT_010001304	SM00322	K homology RNA-binding domain
TOT_010001312	SM00102	Actin depolymerisation factor/cofilin -like domains
TOT_010001329	SM01311	TOT_010001329
TOT_010001334	SM01180	TOT_010001334
TOT_010001339	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
TOT_010001364	SM00543	Middle domain of eukaryotic initiation factor 4G (eIF4G)
TOT_010001364	SM00544	Domain in DAP-5, eIF4G, MA-3 and other proteins.
TOT_010001366	SM00360	RNA recognition motif
TOT_020000006	SM00382	ATPases associated with a variety of cellular activities
TOT_020000071	SM00356	zinc finger
TOT_020000074	SM01407	TOT_020000074
TOT_020000088	SM00451	U1-like zinc finger
TOT_020000108	SM00356	zinc finger
TOT_020000204	SM00271	DnaJ molecular chaperone homology domain
TOT_020000238	SM01264	TOT_020000238
TOT_020000240	SM01264	TOT_020000240
TOT_020000261	SM00360	RNA recognition motif
TOT_020000311	SM00297	bromo domain
TOT_020000313	SM01190	TOT_020000313
TOT_020000328	SM00382	ATPases associated with a variety of cellular activities
TOT_020000374	SM00156	Protein phosphatase 2A homologues, catalytic domain.
TOT_020000382	SM00382	ATPases associated with a variety of cellular activities
TOT_020000384	SM00382	ATPases associated with a variety of cellular activities
TOT_020000385	SM00382	ATPases associated with a variety of cellular activities
TOT_020000398	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
TOT_020000403	SM00320	WD40 repeats
TOT_020000413	SM00562	TOT_020000413
TOT_020000454	SM00240	Forkhead associated domain
TOT_020000496	SM00487	DEAD-like helicases superfamily
TOT_020000496	SM00490	helicase superfamily c-terminal domain
TOT_020000497	SM00184	Ring finger
TOT_020000503	SM00271	DnaJ molecular chaperone homology domain
TOT_020000529	SM00360	RNA recognition motif
TOT_020000551	SM00173	Ras subfamily of RAS small GTPases
TOT_020000551	SM00174	Rho (Ras homology) subfamily of Ras-like small GTPases
TOT_020000551	SM00175	Rab subfamily of small GTPases
TOT_020000551	SM00176	Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases
TOT_020000566	SM00072	Guanylate kinase homologues.
TOT_020000579	SM00584	domain in TBC and LysM domain containing proteins
TOT_020000655	SM00382	ATPases associated with a variety of cellular activities
TOT_020000656	SM00382	ATPases associated with a variety of cellular activities
TOT_020000677	SM00268	Actin
TOT_020000720	SM00382	ATPases associated with a variety of cellular activities
TOT_020000722	SM00382	ATPases associated with a variety of cellular activities
TOT_020000763	SM00356	zinc finger
TOT_020000782	SM00382	ATPases associated with a variety of cellular activities
TOT_020000839	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TOT_020000949	SM01270	TOT_020000949
TOT_020000963	SM00027	Eps15 homology domain
TOT_020000963	SM00054	EF-hand, calcium binding motif
TOT_020000970	SM00382	ATPases associated with a variety of cellular activities
TOT_020000973	SM00577	catalytic domain of ctd-like phosphatases
TOT_020000985	SM00382	ATPases associated with a variety of cellular activities
TOT_020001008	SM01405	TOT_020001008
TOT_020001024	SM00184	Ring finger
TOT_020001029	SM00444	Contains conserved Gly-Tyr-Phe residues
TOT_020001041	SM00487	DEAD-like helicases superfamily
TOT_020001041	SM00490	helicase superfamily c-terminal domain
TOT_020001063	SM00100	Cyclic nucleotide-monophosphate binding domain
TOT_020001102	SM00268	Actin
TOT_030000131	SM00360	RNA recognition motif
TOT_030000152	SM00653	domain present in translation initiation factor eIF2B and eIF5
TOT_030000155	SM01413	TOT_030000155
TOT_030000173	SM01397	TOT_030000173
TOT_030000203	SM00487	DEAD-like helicases superfamily
TOT_030000203	SM00490	helicase superfamily c-terminal domain
TOT_030000257	SM00357	Cold shock protein domain
TOT_030000330	SM00248	ankyrin repeats
TOT_030000381	SM00398	high mobility group
TOT_030000433	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
TOT_030000439	SM00213	Ubiquitin homologues
TOT_030000445	SM00244	prohibitin homologues
TOT_030000475	SM00385	domain present in cyclins, TFIIB and Retinoblastoma
TOT_030000511	SM00668	C-terminal to LisH motif. 
TOT_030000535	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_030000547	SM00553	Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
TOT_030000563	SM00645	Papain family cysteine protease
TOT_030000563	SM00848	Cathepsin propeptide inhibitor domain (I29)
TOT_030000565	SM00645	Papain family cysteine protease
TOT_030000565	SM00848	Cathepsin propeptide inhibitor domain (I29)
TOT_030000580	SM01084	Cyclin-dependent kinase regulatory subunit
TOT_030000593	SM00487	DEAD-like helicases superfamily
TOT_030000606	SM01326	TOT_030000606
TOT_030000644	SM00382	ATPases associated with a variety of cellular activities
TOT_030000665	SM00663	RNA polymerase I subunit A N-terminus
TOT_030000686	SM01416	TOT_030000686
TOT_030000697	SM00428	Histone H3
TOT_030000710	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_030000774	SM01084	Cyclin-dependent kinase regulatory subunit
TOT_030000818	SM01125	TOT_030000818
TOT_030000826	SM00320	WD40 repeats
TOT_030000911	SM00975	Telomerase ribonucleoprotein complex - RNA binding domain
TOT_030000928	SM00841	Elongation factor P, C-terminal
TOT_030000929	SM00948	Proteasome subunit A N-terminal signature  Add an annotation
TOT_040000008	SM00382	ATPases associated with a variety of cellular activities
TOT_040000017	SM00382	ATPases associated with a variety of cellular activities
TOT_040000034	SM00360	RNA recognition motif
TOT_040000034	SM00386	HAT (Half-A-TPR) repeats
TOT_040000054	SM00487	DEAD-like helicases superfamily
TOT_040000054	SM00490	helicase superfamily c-terminal domain
TOT_040000057	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
TOT_040000060	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_040000076	SM01407	TOT_040000076
TOT_040000079	SM00952	TOT_040000079
TOT_040000108	SM00547	Zinc finger domain
TOT_040000157	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TOT_040000166	SM00088	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
TOT_040000166	SM00753	PCI/PINT associated module
TOT_040000178	SM01402	TOT_040000178
TOT_040000188	SM00088	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
TOT_040000188	SM00753	PCI/PINT associated module
TOT_040000244	SM00320	WD40 repeats
TOT_040000254	SM00417	Histone H4
TOT_040000255	SM00220	Serine/Threonine protein kinases, catalytic domain
TOT_040000275	SM00382	ATPases associated with a variety of cellular activities
TOT_040000277	SM00154	AN1-like Zinc finger
TOT_040000323	SM00248	ankyrin repeats
TOT_040000350	SM00173	Ras subfamily of RAS small GTPases
TOT_040000350	SM00174	Rho (Ras homology) subfamily of Ras-like small GTPases
TOT_040000350	SM00175	Rab subfamily of small GTPases
TOT_040000390	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
TOT_040000390	SM00484	Xeroderma pigmentosum G I-region
TOT_040000390	SM00485	Xeroderma pigmentosum G N-region
TOT_040000409	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
TOT_040000416	SM00487	DEAD-like helicases superfamily
TOT_040000416	SM00490	helicase superfamily c-terminal domain
TOT_040000416	SM00956	TOT_040000416
TOT_040000468	SM00356	zinc finger
TOT_040000502	SM00427	Histone H2B
TOT_040000506	SM00360	RNA recognition motif
TOT_040000517	SM00428	Histone H3
TOT_040000518	SM00414	Histone 2A
TOT_040000551	SM00320	WD40 repeats
TOT_040000571	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TOT_040000573	SM00451	U1-like zinc finger
TOT_040000579	SM01374	TOT_040000579
TOT_040000616	SM00382	ATPases associated with a variety of cellular activities
TOT_040000617	SM00382	ATPases associated with a variety of cellular activities
TOT_040000657	SM00543	Middle domain of eukaryotic initiation factor 4G (eIF4G)
TOT_040000734	SM00484	Xeroderma pigmentosum G I-region
TOT_040000821	SM00184	Ring finger
TOT_040000821	SM00249	PHD zinc finger
TOT_040000822	SM00427	Histone H2B
TOT_040000912	SM00320	WD40 repeats
TOT_040000929	SM00220	Serine/Threonine protein kinases, catalytic domain
