locus-tag class description TherJR_0001 PF08299 Bacterial dnaA protein helix-turn-helix TherJR_0001 PF00308 Bacterial dnaA protein TherJR_0001 PF11638 DnaA N-terminal domain TherJR_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain TherJR_0002 PF02767 DNA polymerase III beta subunit, central domain TherJR_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain TherJR_0004 PF02463 RecF/RecN/SMC N terminal domain TherJR_0005 PF04025 Domain of unknown function (DUF370) TherJR_0008 PF01751 Toprim domain TherJR_0008 PF00986 DNA gyrase B subunit, carboxyl terminus TherJR_0008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0008 PF00204 DNA gyrase B TherJR_0009 PF00521 DNA gyrase/topoisomerase IV, subunit A TherJR_0009 PF03989 DNA gyrase C-terminal domain, beta-propeller TherJR_0010 PF01680 SOR/SNZ family TherJR_0011 PF01174 SNO glutamine amidotransferase family TherJR_0012 PF00266 Aminotransferase class-V TherJR_0013 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TherJR_0013 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TherJR_0013 PF01842 ACT domain TherJR_0014 PF02403 Seryl-tRNA synthetase N-terminal domain TherJR_0014 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TherJR_0015 PF14437 MafB19-like deaminase TherJR_0017 PF00392 Bacterial regulatory proteins, gntR family TherJR_0018 PF00005 ABC transporter TherJR_0020 PF01471 Putative peptidoglycan binding domain TherJR_0020 PF03572 Peptidase family S41 TherJR_0020 PF17820 PDZ domain TherJR_0024 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TherJR_0024 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TherJR_0024 PF02142 MGS-like domain TherJR_0025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TherJR_0025 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_0027 PF02607 B12 binding domain TherJR_0027 PF02310 B12 binding domain TherJR_0029 PF00158 Sigma-54 interaction domain TherJR_0031 PF00474 Sodium:solute symporter family TherJR_0032 PF00936 BMC domain TherJR_0034 PF06751 Ethanolamine ammonia lyase large subunit (EutB) TherJR_0035 PF05985 Ethanolamine ammonia-lyase light chain (EutC) TherJR_0036 PF06277 Ethanolamine utilisation protein EutA TherJR_0037 PF00936 BMC domain TherJR_0038 PF01923 Cobalamin adenosyltransferase TherJR_0041 PF03319 Ethanolamine utilisation protein EutN/carboxysome TherJR_0042 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TherJR_0042 PF13237 4Fe-4S dicluster domain TherJR_0042 PF10531 SLBB domain TherJR_0042 PF13375 RnfC Barrel sandwich hybrid domain TherJR_0044 PF06249 Ethanolamine utilisation protein EutQ TherJR_0045 PF00936 BMC domain TherJR_0046 PF00936 BMC domain TherJR_0047 PF00465 Iron-containing alcohol dehydrogenase TherJR_0047 PF00171 Aldehyde dehydrogenase family TherJR_0048 PF06130 Phosphate propanoyltransferase TherJR_0049 PF00871 Acetokinase family TherJR_0050 PF02441 Flavoprotein TherJR_0051 PF12833 Helix-turn-helix domain TherJR_0051 PF02311 AraC-like ligand binding domain TherJR_0052 PF02607 B12 binding domain TherJR_0052 PF02310 B12 binding domain TherJR_0054 PF08406 CbbQ/NirQ/NorQ C-terminal TherJR_0054 PF07728 AAA domain (dynein-related subfamily) TherJR_0058 PF02310 B12 binding domain TherJR_0058 PF02607 B12 binding domain TherJR_0059 PF00809 Pterin binding enzyme TherJR_0060 PF13419 Haloacid dehalogenase-like hydrolase TherJR_0062 PF01910 Thiamine-binding protein TherJR_0063 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0064 PF09084 NMT1/THI5 like TherJR_0065 PF00005 ABC transporter TherJR_0066 PF04263 Thiamin pyrophosphokinase, catalytic domain TherJR_0066 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain TherJR_0068 PF12169 DNA polymerase III subunits gamma and tau domain III TherJR_0069 PF02575 YbaB/EbfC DNA-binding family TherJR_0071 PF00793 DAHP synthetase I family TherJR_0071 PF18152 DAHP synthase ferredoxin-like domain TherJR_0072 PF01842 ACT domain TherJR_0072 PF01817 Chorismate mutase type II TherJR_0072 PF00800 Prephenate dehydratase TherJR_0082 PF01464 Transglycosylase SLT domain TherJR_0084 PF01276 Orn/Lys/Arg decarboxylase, major domain TherJR_0084 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain TherJR_0085 PF02223 Thymidylate kinase TherJR_0087 PF09115 DNA polymerase III, delta subunit, C terminal TherJR_0088 PF04468 PSP1 C-terminal conserved region TherJR_0089 PF06156 Initiation control protein YabA TherJR_0090 PF05175 Methyltransferase small domain TherJR_0091 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_0092 PF18277 AbrB C-terminal domain TherJR_0092 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TherJR_0094 PF09334 tRNA synthetases class I (M) TherJR_0094 PF01588 Putative tRNA binding domain TherJR_0094 PF08264 Anticodon-binding domain of tRNA TherJR_0095 PF01026 TatD related DNase TherJR_0101 PF07501 G5 domain TherJR_0101 PF03990 G5-linked-Ubiquitin-like domain TherJR_0101 PF06725 3D domain TherJR_0102 PF00398 Ribosomal RNA adenine dimethylase TherJR_0104 PF05582 YabG peptidase U57 TherJR_0105 PF16363 GDP-mannose 4,6 dehydratase TherJR_0106 PF00877 NlpC/P60 family TherJR_0106 PF01476 LysM domain TherJR_0109 PF02535 ZIP Zinc transporter TherJR_0110 PF01584 CheW-like domain TherJR_0111 PF07194 P2 response regulator binding domain TherJR_0111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0111 PF02895 Signal transducing histidine kinase, homodimeric domain TherJR_0111 PF01627 Hpt domain TherJR_0111 PF01584 CheW-like domain TherJR_0112 PF00072 Response regulator receiver domain TherJR_0113 PF01339 CheB methylesterase TherJR_0113 PF00072 Response regulator receiver domain TherJR_0116 PF13426 PAS domain TherJR_0116 PF08447 PAS fold TherJR_0116 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0123 PF00672 HAMP domain TherJR_0123 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0123 PF12729 Four helix bundle sensory module for signal transduction TherJR_0124 PF03734 L,D-transpeptidase catalytic domain TherJR_0124 PF01476 LysM domain TherJR_0125 PF03575 Peptidase family S51 TherJR_0126 PF08245 Mur ligase middle domain TherJR_0126 PF02875 Mur ligase family, glutamate ligase domain TherJR_0126 PF08443 RimK-like ATP-grasp domain TherJR_0127 PF00288 GHMP kinases N terminal domain TherJR_0127 PF08544 GHMP kinases C terminal TherJR_0128 PF00392 Bacterial regulatory proteins, gntR family TherJR_0128 PF07729 FCD domain TherJR_0130 PF04026 SpoVG TherJR_0131 PF00132 Bacterial transferase hexapeptide (six repeats) TherJR_0131 PF12804 MobA-like NTP transferase domain TherJR_0132 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TherJR_0132 PF14572 Phosphoribosyl synthetase-associated domain TherJR_0133 PF02590 Predicted SPOUT methyltransferase TherJR_0139 PF01048 Phosphorylase superfamily TherJR_0140 PF02621 Menaquinone biosynthesis TherJR_0147 PF12728 Helix-turn-helix domain TherJR_0148 PF13237 4Fe-4S dicluster domain TherJR_0148 PF12801 4Fe-4S binding domain TherJR_0149 PF01479 S4 domain TherJR_0149 PF00849 RNA pseudouridylate synthase TherJR_0150 PF17126 RsmF rRNA methyltransferase first C-terminal domain TherJR_0150 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TherJR_0150 PF01189 16S rRNA methyltransferase RsmB/F TherJR_0152 PF00440 Bacterial regulatory proteins, tetR family TherJR_0154 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TherJR_0154 PF17126 RsmF rRNA methyltransferase first C-terminal domain TherJR_0154 PF01189 16S rRNA methyltransferase RsmB/F TherJR_0156 PF12801 4Fe-4S binding domain TherJR_0157 PF00440 Bacterial regulatory proteins, tetR family TherJR_0158 PF01476 LysM domain TherJR_0158 PF08525 Opacity-associated protein A N-terminal motif TherJR_0158 PF01551 Peptidase family M23 TherJR_0162 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TherJR_0163 PF02743 Cache domain TherJR_0163 PF00672 HAMP domain TherJR_0163 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0165 PF00753 Metallo-beta-lactamase superfamily TherJR_0171 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0171 PF08447 PAS fold TherJR_0171 PF13426 PAS domain TherJR_0173 PF13180 PDZ domain TherJR_0175 PF14693 Ribosomal protein TL5, C-terminal domain TherJR_0175 PF01386 Ribosomal L25p family TherJR_0176 PF01195 Peptidyl-tRNA hydrolase TherJR_0178 PF02559 CarD-like/TRCF domain TherJR_0178 PF00270 DEAD/DEAH box helicase TherJR_0178 PF00271 Helicase conserved C-terminal domain TherJR_0178 PF03461 TRCF domain TherJR_0178 PF17757 UvrB interaction domain TherJR_0180 PF15714 Stage V sporulation protein T C-terminal, transcription factor TherJR_0180 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TherJR_0181 PF14667 Polysaccharide biosynthesis C-terminal domain TherJR_0181 PF01943 Polysaccharide biosynthesis protein TherJR_0182 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_0182 PF03819 MazG nucleotide pyrophosphohydrolase domain TherJR_0183 PF00216 Bacterial DNA-binding protein TherJR_0184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0184 PF00672 HAMP domain TherJR_0184 PF02743 Cache domain TherJR_0185 PF01479 S4 domain TherJR_0186 PF08486 Stage II sporulation protein TherJR_0187 PF07873 YabP family TherJR_0191 PF00575 S1 RNA binding domain TherJR_0193 PF00440 Bacterial regulatory proteins, tetR family TherJR_0193 PF08359 YsiA-like protein, C-terminal region TherJR_0196 PF02541 Ppx/GppA phosphatase family TherJR_0198 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TherJR_0198 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TherJR_0198 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TherJR_0198 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TherJR_0202 PF07228 Stage II sporulation protein E (SpoIIE) TherJR_0204 PF11734 TilS substrate C-terminal domain TherJR_0204 PF01171 PP-loop family TherJR_0205 PF06480 FtsH Extracellular TherJR_0205 PF17862 AAA+ lid domain TherJR_0205 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_0205 PF01434 Peptidase family M41 TherJR_0206 PF00334 Nucleoside diphosphate kinase TherJR_0208 PF01268 Formate--tetrahydrofolate ligase TherJR_0209 PF01909 Nucleotidyltransferase domain TherJR_0209 PF01842 ACT domain TherJR_0209 PF08335 GlnD PII-uridylyltransferase TherJR_0209 PF01966 HD domain TherJR_0210 PF00809 Pterin binding enzyme TherJR_0211 PF02152 Dihydroneopterin aldolase TherJR_0212 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TherJR_0213 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TherJR_0213 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TherJR_0214 PF02548 Ketopantoate hydroxymethyltransferase TherJR_0215 PF02569 Pantoate-beta-alanine ligase TherJR_0216 PF02261 Aspartate decarboxylase TherJR_0217 PF02445 Quinolinate synthetase A protein TherJR_0218 PF02910 Fumarate reductase flavoprotein C-term TherJR_0218 PF00890 FAD binding domain TherJR_0219 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TherJR_0219 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TherJR_0220 PF02237 Biotin protein ligase C terminal domain TherJR_0220 PF08279 HTH domain TherJR_0220 PF03099 Biotin/lipoate A/B protein ligase family TherJR_0221 PF02632 BioY family TherJR_0223 PF01078 Magnesium chelatase, subunit ChlI TherJR_0223 PF13519 von Willebrand factor type A domain TherJR_0223 PF17863 AAA lid domain TherJR_0224 PF13690 Chemotaxis phosphatase CheX TherJR_0225 PF03309 Type III pantothenate kinase TherJR_0226 PF01207 Dihydrouridine synthase (Dus) TherJR_0230 PF01336 OB-fold nucleic acid binding domain TherJR_0230 PF00152 tRNA synthetases class II (D, K and N) TherJR_0234 PF14537 Cytochrome c3 TherJR_0234 PF00890 FAD binding domain TherJR_0235 PF13556 PucR C-terminal helix-turn-helix domain TherJR_0235 PF17853 GGDEF-like domain TherJR_0236 PF02416 mttA/Hcf106 family TherJR_0240 PF17727 CtsR C-terminal dimerization domain TherJR_0240 PF05848 CtsR N-terminal HTH domain TherJR_0241 PF00271 Helicase conserved C-terminal domain TherJR_0241 PF04851 Type III restriction enzyme, res subunit TherJR_0241 PF02151 UvrB/uvrC motif TherJR_0241 PF12344 Ultra-violet resistance protein B TherJR_0241 PF17757 UvrB interaction domain TherJR_0242 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain TherJR_0243 PF02861 Clp amino terminal domain, pathogenicity island component TherJR_0243 PF10431 C-terminal, D2-small domain, of ClpB protein TherJR_0243 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_0243 PF07724 AAA domain (Cdc48 subfamily) TherJR_0243 PF17871 AAA lid domain TherJR_0245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) TherJR_0247 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain TherJR_0247 PF07228 Stage II sporulation protein E (SpoIIE) TherJR_0248 PF18073 Rubredoxin metal binding domain TherJR_0249 PF02457 DisA bacterial checkpoint controller nucleotide-binding TherJR_0249 PF10635 DisA bacterial checkpoint controller linker region TherJR_0249 PF12826 Helix-hairpin-helix motif TherJR_0251 PF02559 CarD-like/TRCF domain TherJR_0253 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TherJR_0254 PF02542 YgbB family TherJR_0257 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_0257 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TherJR_0258 PF00374 Nickel-dependent hydrogenase TherJR_0260 PF01750 Hydrogenase maturation protease TherJR_0261 PF00440 Bacterial regulatory proteins, tetR family TherJR_0263 PF13533 Biotin-lipoyl like TherJR_0266 PF06207 Protein of unknown function (DUF1002) TherJR_0268 PF00749 tRNA synthetases class I (E and Q), catalytic domain TherJR_0269 PF06426 Serine acetyltransferase, N-terminal TherJR_0269 PF00132 Bacterial transferase hexapeptide (six repeats) TherJR_0270 PF01406 tRNA synthetases class I (C) catalytic domain TherJR_0270 PF09190 DALR domain TherJR_0271 PF00636 Ribonuclease III domain TherJR_0272 PF02511 Thymidylate synthase complementing protein TherJR_0273 PF08032 RNA 2'-O ribose methyltransferase substrate binding TherJR_0273 PF00588 SpoU rRNA Methylase family TherJR_0274 PF05991 YacP-like NYN domain TherJR_0275 PF04542 Sigma-70 region 2 TherJR_0275 PF08281 Sigma-70, region 4 TherJR_0276 PF03144 Elongation factor Tu domain 2 TherJR_0276 PF03143 Elongation factor Tu C-terminal domain TherJR_0276 PF00009 Elongation factor Tu GTP binding domain TherJR_0280 PF00471 Ribosomal protein L33 TherJR_0282 PF02357 Transcription termination factor nusG TherJR_0282 PF00467 KOW motif TherJR_0283 PF00298 Ribosomal protein L11, RNA binding domain TherJR_0283 PF03946 Ribosomal protein L11, N-terminal domain TherJR_0284 PF00687 Ribosomal protein L1p/L10e family TherJR_0285 PF00466 Ribosomal protein L10 TherJR_0286 PF00542 Ribosomal protein L7/L12 C-terminal domain TherJR_0286 PF16320 Ribosomal protein L7/L12 dimerisation domain TherJR_0288 PF00562 RNA polymerase Rpb2, domain 6 TherJR_0288 PF04563 RNA polymerase beta subunit TherJR_0288 PF10385 RNA polymerase beta subunit external 1 domain TherJR_0288 PF04565 RNA polymerase Rpb2, domain 3 TherJR_0288 PF04561 RNA polymerase Rpb2, domain 2 TherJR_0288 PF04560 RNA polymerase Rpb2, domain 7 TherJR_0289 PF00623 RNA polymerase Rpb1, domain 2 TherJR_0289 PF04997 RNA polymerase Rpb1, domain 1 TherJR_0289 PF04983 RNA polymerase Rpb1, domain 3 TherJR_0289 PF05000 RNA polymerase Rpb1, domain 4 TherJR_0289 PF04998 RNA polymerase Rpb1, domain 5 TherJR_0290 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family TherJR_0291 PF00164 Ribosomal protein S12/S23 TherJR_0292 PF00177 Ribosomal protein S7p/S5e TherJR_0293 PF00009 Elongation factor Tu GTP binding domain TherJR_0293 PF03144 Elongation factor Tu domain 2 TherJR_0293 PF00679 Elongation factor G C-terminus TherJR_0293 PF14492 Elongation Factor G, domain II TherJR_0293 PF03764 Elongation factor G, domain IV TherJR_0294 PF00009 Elongation factor Tu GTP binding domain TherJR_0294 PF03143 Elongation factor Tu C-terminal domain TherJR_0294 PF03144 Elongation factor Tu domain 2 TherJR_0295 PF00338 Ribosomal protein S10p/S20e TherJR_0296 PF00297 Ribosomal protein L3 TherJR_0297 PF00573 Ribosomal protein L4/L1 family TherJR_0298 PF00276 Ribosomal protein L23 TherJR_0299 PF03947 Ribosomal Proteins L2, C-terminal domain TherJR_0299 PF00181 Ribosomal Proteins L2, RNA binding domain TherJR_0301 PF00237 Ribosomal protein L22p/L17e TherJR_0302 PF00189 Ribosomal protein S3, C-terminal domain TherJR_0302 PF07650 KH domain TherJR_0303 PF00252 Ribosomal protein L16p/L10e TherJR_0304 PF00831 Ribosomal L29 protein TherJR_0305 PF00366 Ribosomal protein S17 TherJR_0306 PF00238 Ribosomal protein L14p/L23e TherJR_0307 PF00467 KOW motif TherJR_0307 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TherJR_0308 PF00281 Ribosomal protein L5 TherJR_0308 PF00673 ribosomal L5P family C-terminus TherJR_0309 PF00253 Ribosomal protein S14p/S29e TherJR_0310 PF00410 Ribosomal protein S8 TherJR_0311 PF00347 Ribosomal protein L6 TherJR_0312 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TherJR_0313 PF00333 Ribosomal protein S5, N-terminal domain TherJR_0313 PF03719 Ribosomal protein S5, C-terminal domain TherJR_0314 PF00327 Ribosomal protein L30p/L7e TherJR_0315 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TherJR_0316 PF00344 SecY translocase TherJR_0317 PF00557 Metallopeptidase family M24 TherJR_0319 PF01176 Translation initiation factor 1A / IF-1 TherJR_0320 PF00444 Ribosomal protein L36 TherJR_0321 PF00416 Ribosomal protein S13/S18 TherJR_0322 PF00411 Ribosomal protein S11 TherJR_0323 PF00163 Ribosomal protein S4/S9 N-terminal domain TherJR_0323 PF01479 S4 domain TherJR_0324 PF01000 RNA polymerase Rpb3/RpoA insert domain TherJR_0324 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TherJR_0324 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TherJR_0325 PF01196 Ribosomal protein L17 TherJR_0327 PF00005 ABC transporter TherJR_0328 PF00005 ABC transporter TherJR_0329 PF02361 Cobalt transport protein TherJR_0330 PF01416 tRNA pseudouridine synthase TherJR_0331 PF00572 Ribosomal protein L13 TherJR_0332 PF00380 Ribosomal protein S9/S16 TherJR_0335 PF01520 N-acetylmuramoyl-L-alanine amidase TherJR_0336 PF01871 AMMECR1 TherJR_0336 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TherJR_0341 PF00892 EamA-like transporter family TherJR_0343 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TherJR_0343 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_0343 PF10518 TAT (twin-arginine translocation) pathway signal sequence TherJR_0344 PF00374 Nickel-dependent hydrogenase TherJR_0345 PF01292 Prokaryotic cytochrome b561 TherJR_0346 PF01118 Semialdehyde dehydrogenase, NAD binding domain TherJR_0346 PF02774 Semialdehyde dehydrogenase, dimerisation domain TherJR_0347 PF01960 ArgJ family TherJR_0350 PF00696 Amino acid kinase family TherJR_0351 PF00202 Aminotransferase class-III TherJR_0352 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TherJR_0352 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TherJR_0352 PF02142 MGS-like domain TherJR_0353 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TherJR_0353 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TherJR_0354 PF00764 Arginosuccinate synthase TherJR_0356 PF00206 Lyase TherJR_0356 PF14698 Argininosuccinate lyase C-terminal TherJR_0357 PF13840 ACT domain TherJR_0357 PF00696 Amino acid kinase family TherJR_0358 PF01063 Amino-transferase class IV TherJR_0360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TherJR_0360 PF00205 Thiamine pyrophosphate enzyme, central domain TherJR_0360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TherJR_0361 PF10369 Small subunit of acetolactate synthase TherJR_0362 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TherJR_0362 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TherJR_0363 PF08502 LeuA allosteric (dimerisation) domain TherJR_0363 PF00682 HMGL-like TherJR_0364 PF00330 Aconitase family (aconitate hydratase) TherJR_0365 PF00694 Aconitase C-terminal domain TherJR_0366 PF00180 Isocitrate/isopropylmalate dehydrogenase TherJR_0367 PF08502 LeuA allosteric (dimerisation) domain TherJR_0367 PF00682 HMGL-like TherJR_0368 PF13193 AMP-binding enzyme C-terminal domain TherJR_0368 PF16177 Acetyl-coenzyme A synthetase N-terminus TherJR_0368 PF00501 AMP-binding enzyme TherJR_0370 PF16177 Acetyl-coenzyme A synthetase N-terminus TherJR_0370 PF00501 AMP-binding enzyme TherJR_0370 PF13193 AMP-binding enzyme C-terminal domain TherJR_0371 PF00501 AMP-binding enzyme TherJR_0371 PF13193 AMP-binding enzyme C-terminal domain TherJR_0372 PF10145 Phage-related minor tail protein TherJR_0372 PF01551 Peptidase family M23 TherJR_0372 PF01464 Transglycosylase SLT domain TherJR_0373 PF05949 Bacterial protein of unknown function (DUF881) TherJR_0374 PF06947 Protein of unknown function (DUF1290) TherJR_0376 PF02457 DisA bacterial checkpoint controller nucleotide-binding TherJR_0379 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TherJR_0379 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TherJR_0379 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TherJR_0379 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TherJR_0380 PF01380 SIS domain TherJR_0383 PF00437 Type II/IV secretion system protein TherJR_0412 PF00990 Diguanylate cyclase, GGDEF domain TherJR_0412 PF00072 Response regulator receiver domain TherJR_0417 PF00005 ABC transporter TherJR_0418 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0419 PF00497 Bacterial extracellular solute-binding proteins, family 3 TherJR_0421 PF04239 Protein of unknown function (DUF421) TherJR_0422 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TherJR_0422 PF06165 Glycosyltransferase family 36 TherJR_0422 PF10091 Putative glucoamylase TherJR_0423 PF07517 SecA DEAD-like domain TherJR_0423 PF02810 SEC-C motif TherJR_0423 PF07516 SecA Wing and Scaffold domain TherJR_0423 PF01043 SecA preprotein cross-linking domain TherJR_0424 PF00990 Diguanylate cyclase, GGDEF domain TherJR_0431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0431 PF00183 Hsp90 protein TherJR_0437 PF01230 HIT domain TherJR_0440 PF02915 Rubrerythrin TherJR_0441 PF01880 Desulfoferrodoxin TherJR_0441 PF06397 Desulfoferrodoxin, N-terminal domain TherJR_0443 PF01022 Bacterial regulatory protein, arsR family TherJR_0449 PF13847 Methyltransferase domain TherJR_0450 PF01022 Bacterial regulatory protein, arsR family TherJR_0452 PF00581 Rhodanese-like domain TherJR_0453 PF07690 Major Facilitator Superfamily TherJR_0454 PF02627 Carboxymuconolactone decarboxylase family TherJR_0455 PF16916 Dimerisation domain of Zinc Transporter TherJR_0455 PF01545 Cation efflux family TherJR_0456 PF01022 Bacterial regulatory protein, arsR family TherJR_0460 PF00266 Aminotransferase class-V TherJR_0465 PF08281 Sigma-70, region 4 TherJR_0465 PF04542 Sigma-70 region 2 TherJR_0471 PF01022 Bacterial regulatory protein, arsR family TherJR_0472 PF01758 Sodium Bile acid symporter family TherJR_0474 PF04101 Glycosyltransferase family 28 C-terminal domain TherJR_0474 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase TherJR_0476 PF09335 SNARE associated Golgi protein TherJR_0482 PF03023 Lipid II flippase MurJ TherJR_0483 PF08281 Sigma-70, region 4 TherJR_0483 PF04542 Sigma-70 region 2 TherJR_0486 PF09335 SNARE associated Golgi protein TherJR_0489 PF09350 Domain of unknown function (DUF1992) TherJR_0494 PF00483 Nucleotidyl transferase TherJR_0495 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TherJR_0497 PF00581 Rhodanese-like domain TherJR_0498 PF00535 Glycosyl transferase family 2 TherJR_0500 PF00892 EamA-like transporter family TherJR_0501 PF00892 EamA-like transporter family TherJR_0503 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0504 PF00005 ABC transporter TherJR_0506 PF04143 Sulphur transport TherJR_0507 PF01206 Sulfurtransferase TusA TherJR_0508 PF04143 Sulphur transport TherJR_0511 PF03466 LysR substrate binding domain TherJR_0511 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TherJR_0515 PF00072 Response regulator receiver domain TherJR_0515 PF01966 HD domain TherJR_0516 PF00072 Response regulator receiver domain TherJR_0516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0516 PF01627 Hpt domain TherJR_0516 PF00512 His Kinase A (phospho-acceptor) domain TherJR_0516 PF18415 Histidine kinase receptor ArcB trans-membrane domain TherJR_0516 PF00989 PAS fold TherJR_0518 PF01569 PAP2 superfamily TherJR_0519 PF12802 MarR family TherJR_0522 PF01209 ubiE/COQ5 methyltransferase family TherJR_0525 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain TherJR_0525 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain TherJR_0526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TherJR_0526 PF03466 LysR substrate binding domain TherJR_0527 PF03601 Conserved hypothetical protein 698 TherJR_0528 PF02654 Cobalamin-5-phosphate synthase TherJR_0537 PF13538 UvrD-like helicase C-terminal domain TherJR_0537 PF14490 Helix-hairpin-helix containing domain TherJR_0537 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain TherJR_0542 PF00440 Bacterial regulatory proteins, tetR family TherJR_0543 PF00196 Bacterial regulatory proteins, luxR family TherJR_0543 PF00072 Response regulator receiver domain TherJR_0544 PF13183 4Fe-4S dicluster domain TherJR_0544 PF02754 Cysteine-rich domain TherJR_0545 PF04055 Radical SAM superfamily TherJR_0545 PF02310 B12 binding domain TherJR_0547 PF05175 Methyltransferase small domain TherJR_0547 PF17827 PrmC N-terminal domain TherJR_0548 PF02277 Phosphoribosyltransferase TherJR_0549 PF02654 Cobalamin-5-phosphate synthase TherJR_0550 PF01964 Radical SAM ThiC family TherJR_0551 PF01964 Radical SAM ThiC family TherJR_0552 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin TherJR_0553 PF13411 MerR HTH family regulatory protein TherJR_0554 PF01435 Peptidase family M48 TherJR_0555 PF00196 Bacterial regulatory proteins, luxR family TherJR_0556 PF00082 Subtilase family TherJR_0562 PF00082 Subtilase family TherJR_0569 PF00082 Subtilase family TherJR_0579 PF03190 Protein of unknown function, DUF255 TherJR_0581 PF07690 Major Facilitator Superfamily TherJR_0585 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TherJR_0586 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TherJR_0587 PF02641 Uncharacterized ACR, COG1993 TherJR_0588 PF00350 Dynamin family TherJR_0590 PF00176 SNF2 family N-terminal domain TherJR_0590 PF00271 Helicase conserved C-terminal domain TherJR_0590 PF12419 SNF2 Helicase protein TherJR_0597 PF08780 Nucleotidyltransferase substrate binding protein like TherJR_0600 PF09084 NMT1/THI5 like TherJR_0601 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0602 PF00005 ABC transporter TherJR_0603 PF00491 Arginase family TherJR_0605 PF00547 Urease, gamma subunit TherJR_0606 PF00699 Urease beta subunit TherJR_0608 PF02814 UreE urease accessory protein, N-terminal domain TherJR_0608 PF05194 UreE urease accessory protein, C-terminal domain TherJR_0609 PF01730 UreF TherJR_0610 PF02492 CobW/HypB/UreG, nucleotide-binding domain TherJR_0612 PF06496 Protein of unknown function (DUF1097) TherJR_0613 PF00871 Acetokinase family TherJR_0614 PF00672 HAMP domain TherJR_0614 PF06580 Histidine kinase TherJR_0614 PF02743 Cache domain TherJR_0614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0615 PF04397 LytTr DNA-binding domain TherJR_0615 PF00072 Response regulator receiver domain TherJR_0616 PF00936 BMC domain TherJR_0617 PF00936 BMC domain TherJR_0618 PF02286 Dehydratase large subunit TherJR_0619 PF02288 Dehydratase medium subunit TherJR_0620 PF02287 Dehydratase small subunit TherJR_0621 PF08841 Diol dehydratase reactivase ATPase-like domain TherJR_0621 PF18427 DD-reactivating factor swiveling domain TherJR_0623 PF00936 BMC domain TherJR_0624 PF00936 BMC domain TherJR_0625 PF06130 Phosphate propanoyltransferase TherJR_0628 PF03319 Ethanolamine utilisation protein EutN/carboxysome TherJR_0629 PF03928 Haem-degrading TherJR_0630 PF00171 Aldehyde dehydrogenase family TherJR_0631 PF13237 4Fe-4S dicluster domain TherJR_0631 PF13375 RnfC Barrel sandwich hybrid domain TherJR_0631 PF10531 SLBB domain TherJR_0631 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TherJR_0633 PF00465 Iron-containing alcohol dehydrogenase TherJR_0634 PF03788 LrgA family TherJR_0635 PF04172 LrgB-like family TherJR_0636 PF13545 Crp-like helix-turn-helix domain TherJR_0636 PF00027 Cyclic nucleotide-binding domain TherJR_0640 PF10609 NUBPL iron-transfer P-loop NTPase TherJR_0645 PF00704 Glycosyl hydrolases family 18 TherJR_0645 PF01476 LysM domain TherJR_0646 PF13180 PDZ domain TherJR_0648 PF06130 Phosphate propanoyltransferase TherJR_0651 PF07694 5TMR of 5TMR-LYT TherJR_0651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0651 PF06580 Histidine kinase TherJR_0651 PF13492 GAF domain TherJR_0652 PF00072 Response regulator receiver domain TherJR_0652 PF04397 LytTr DNA-binding domain TherJR_0653 PF01584 CheW-like domain TherJR_0654 PF01648 4'-phosphopantetheinyl transferase superfamily TherJR_0655 PF01256 Carbohydrate kinase TherJR_0655 PF03853 YjeF-related protein N-terminus TherJR_0656 PF00478 IMP dehydrogenase / GMP reductase domain TherJR_0656 PF00571 CBS domain TherJR_0657 PF01168 Alanine racemase, N-terminal domain TherJR_0657 PF00842 Alanine racemase, C-terminal domain TherJR_0659 PF08376 Nitrate and nitrite sensing TherJR_0659 PF03861 ANTAR domain TherJR_0661 PF00672 HAMP domain TherJR_0661 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0661 PF12729 Four helix bundle sensory module for signal transduction TherJR_0662 PF00072 Response regulator receiver domain TherJR_0663 PF01814 Hemerythrin HHE cation binding domain TherJR_0664 PF01814 Hemerythrin HHE cation binding domain TherJR_0665 PF13537 Glutamine amidotransferase domain TherJR_0665 PF00733 Asparagine synthase TherJR_0672 PF00175 Oxidoreductase NAD-binding domain TherJR_0672 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TherJR_0675 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TherJR_0680 PF01361 Tautomerase enzyme TherJR_0683 PF12728 Helix-turn-helix domain TherJR_0683 PF02661 Fic/DOC family TherJR_0688 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TherJR_0689 PF00543 Nitrogen regulatory protein P-II TherJR_0690 PF00543 Nitrogen regulatory protein P-II TherJR_0691 PF00148 Nitrogenase component 1 type Oxidoreductase TherJR_0692 PF00148 Nitrogenase component 1 type Oxidoreductase TherJR_0693 PF00148 Nitrogenase component 1 type Oxidoreductase TherJR_0694 PF00148 Nitrogenase component 1 type Oxidoreductase TherJR_0695 PF04055 Radical SAM superfamily TherJR_0695 PF02579 Dinitrogenase iron-molybdenum cofactor TherJR_0699 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0700 PF00005 ABC transporter TherJR_0700 PF03459 TOBE domain TherJR_0701 PF00682 HMGL-like TherJR_0702 PF00909 Ammonium Transporter Family TherJR_0703 PF00543 Nitrogen regulatory protein P-II TherJR_0705 PF00909 Ammonium Transporter Family TherJR_0706 PF00543 Nitrogen regulatory protein P-II TherJR_0707 PF00543 Nitrogen regulatory protein P-II TherJR_0708 PF00072 Response regulator receiver domain TherJR_0708 PF03861 ANTAR domain TherJR_0709 PF03951 Glutamine synthetase, beta-Grasp domain TherJR_0709 PF00120 Glutamine synthetase, catalytic domain TherJR_0710 PF03951 Glutamine synthetase, beta-Grasp domain TherJR_0710 PF00120 Glutamine synthetase, catalytic domain TherJR_0711 PF00310 Glutamine amidotransferases class-II TherJR_0712 PF01645 Conserved region in glutamate synthase TherJR_0712 PF13187 4Fe-4S dicluster domain TherJR_0713 PF13247 4Fe-4S dicluster domain TherJR_0713 PF12800 4Fe-4S binding domain TherJR_0714 PF18267 Rubredoxin NAD+ reductase C-terminal domain TherJR_0714 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_0714 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TherJR_0714 PF04324 BFD-like [2Fe-2S] binding domain TherJR_0714 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TherJR_0716 PF01402 Ribbon-helix-helix protein, copG family TherJR_0717 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TherJR_0718 PF07722 Peptidase C26 TherJR_0722 PF01979 Amidohydrolase family TherJR_0723 PF00072 Response regulator receiver domain TherJR_0724 PF08543 Phosphomethylpyrimidine kinase TherJR_0724 PF02581 Thiamine monophosphate synthase TherJR_0725 PF01964 Radical SAM ThiC family TherJR_0726 PF02110 Hydroxyethylthiazole kinase family TherJR_0727 PF00586 AIR synthase related protein, N-terminal domain TherJR_0727 PF02769 AIR synthase related protein, C-terminal domain TherJR_0728 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TherJR_0729 PF00814 Glycoprotease family TherJR_0730 PF00583 Acetyltransferase (GNAT) family TherJR_0731 PF00814 Glycoprotease family TherJR_0733 PF01790 Prolipoprotein diacylglyceryl transferase TherJR_0734 PF13180 PDZ domain TherJR_0735 PF00501 AMP-binding enzyme TherJR_0735 PF14535 AMP-binding enzyme C-terminal domain TherJR_0739 PF01812 5-formyltetrahydrofolate cyclo-ligase family TherJR_0741 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TherJR_0741 PF00037 4Fe-4S binding domain TherJR_0741 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TherJR_0742 PF12838 4Fe-4S dicluster domain TherJR_0742 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_0742 PF01568 Molydopterin dinucleotide binding domain TherJR_0742 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TherJR_0742 PF00384 Molybdopterin oxidoreductase TherJR_0743 PF00384 Molybdopterin oxidoreductase TherJR_0743 PF01568 Molydopterin dinucleotide binding domain TherJR_0743 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_0743 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TherJR_0743 PF12838 4Fe-4S dicluster domain TherJR_0744 PF01568 Molydopterin dinucleotide binding domain TherJR_0744 PF00384 Molybdopterin oxidoreductase TherJR_0744 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_0746 PF01966 HD domain TherJR_0747 PF06866 Protein of unknown function (DUF1256) TherJR_0752 PF03841 L-seryl-tRNA selenium transferase TherJR_0752 PF12390 Selenocysteine synthase N terminal TherJR_0753 PF02769 AIR synthase related protein, C-terminal domain TherJR_0753 PF00586 AIR synthase related protein, N-terminal domain TherJR_0754 PF10079 Bacillithiol biosynthesis BshC TherJR_0755 PF13638 PIN domain TherJR_0755 PF02562 PhoH-like protein TherJR_0757 PF03453 MoeA N-terminal region (domain I and II) TherJR_0757 PF00994 Probable molybdopterin binding domain TherJR_0757 PF03454 MoeA C-terminal region (domain IV) TherJR_0758 PF12728 Helix-turn-helix domain TherJR_0758 PF12727 PBP superfamily domain TherJR_0759 PF04055 Radical SAM superfamily TherJR_0759 PF06463 Molybdenum Cofactor Synthesis C TherJR_0760 PF01967 MoaC family TherJR_0762 PF00994 Probable molybdopterin binding domain TherJR_0763 PF01590 GAF domain TherJR_0763 PF00158 Sigma-54 interaction domain TherJR_0764 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TherJR_0764 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_0765 PF00374 Nickel-dependent hydrogenase TherJR_0766 PF01750 Hydrogenase maturation protease TherJR_0767 PF13247 4Fe-4S dicluster domain TherJR_0767 PF09163 Formate dehydrogenase N, transmembrane TherJR_0767 PF12800 4Fe-4S binding domain TherJR_0769 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_0769 PF01568 Molydopterin dinucleotide binding domain TherJR_0769 PF00384 Molybdopterin oxidoreductase TherJR_0770 PF01568 Molydopterin dinucleotide binding domain TherJR_0770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_0770 PF00384 Molybdopterin oxidoreductase TherJR_0771 PF13247 4Fe-4S dicluster domain TherJR_0771 PF09163 Formate dehydrogenase N, transmembrane TherJR_0772 PF03916 Polysulphide reductase, NrfD TherJR_0774 PF00166 Chaperonin 10 Kd subunit TherJR_0775 PF00118 TCP-1/cpn60 chaperonin family TherJR_0776 PF00291 Pyridoxal-phosphate dependent enzyme TherJR_0777 PF00072 Response regulator receiver domain TherJR_0781 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TherJR_0781 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TherJR_0783 PF17863 AAA lid domain TherJR_0783 PF07726 ATPase family associated with various cellular activities (AAA) TherJR_0785 PF11992 Domain of unknown function (DUF3488) TherJR_0785 PF01841 Transglutaminase-like superfamily TherJR_0785 PF13559 Domain of unknown function (DUF4129) TherJR_0787 PF00958 GMP synthase C terminal domain TherJR_0787 PF00117 Glutamine amidotransferase class-I TherJR_0789 PF00919 Uncharacterized protein family UPF0004 TherJR_0789 PF01938 TRAM domain TherJR_0789 PF04055 Radical SAM superfamily TherJR_0792 PF12849 PBP superfamily domain TherJR_0793 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0794 PF08402 TOBE domain TherJR_0794 PF00005 ABC transporter TherJR_0795 PF00069 Protein kinase domain TherJR_0795 PF03793 PASTA domain TherJR_0797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0797 PF00512 His Kinase A (phospho-acceptor) domain TherJR_0798 PF00072 Response regulator receiver domain TherJR_0798 PF04703 FaeA-like protein TherJR_0799 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_0799 PF00005 ABC transporter TherJR_0800 PF00005 ABC transporter TherJR_0800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_0801 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TherJR_0813 PF00437 Type II/IV secretion system protein TherJR_0817 PF00005 ABC transporter TherJR_0819 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TherJR_0821 PF03466 LysR substrate binding domain TherJR_0821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TherJR_0822 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TherJR_0822 PF00586 AIR synthase related protein, N-terminal domain TherJR_0822 PF02769 AIR synthase related protein, C-terminal domain TherJR_0823 PF00860 Permease family TherJR_0824 PF00731 AIR carboxylase TherJR_0825 PF10397 Adenylosuccinate lyase C-terminus TherJR_0825 PF00206 Lyase TherJR_0826 PF01259 SAICAR synthetase TherJR_0827 PF00156 Phosphoribosyl transferase domain TherJR_0827 PF13537 Glutamine amidotransferase domain TherJR_0828 PF00586 AIR synthase related protein, N-terminal domain TherJR_0828 PF02769 AIR synthase related protein, C-terminal domain TherJR_0829 PF00551 Formyl transferase TherJR_0830 PF01808 AICARFT/IMPCHase bienzyme TherJR_0830 PF02142 MGS-like domain TherJR_0831 PF02843 Phosphoribosylglycinamide synthetase, C domain TherJR_0831 PF02844 Phosphoribosylglycinamide synthetase, N domain TherJR_0831 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TherJR_0832 PF01371 Trp repressor protein TherJR_0833 PF17203 Single cache domain 3 TherJR_0833 PF00989 PAS fold TherJR_0833 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_0833 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain TherJR_0834 PF13393 Histidyl-tRNA synthetase TherJR_0835 PF01634 ATP phosphoribosyltransferase TherJR_0836 PF00815 Histidinol dehydrogenase TherJR_0837 PF00155 Aminotransferase class I and II TherJR_0838 PF00475 Imidazoleglycerol-phosphate dehydratase TherJR_0839 PF00117 Glutamine amidotransferase class-I TherJR_0840 PF00977 Histidine biosynthesis protein TherJR_0841 PF00977 Histidine biosynthesis protein TherJR_0842 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TherJR_0842 PF01502 Phosphoribosyl-AMP cyclohydrolase TherJR_0843 PF17202 Single cache domain 3 TherJR_0843 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_0843 PF00672 HAMP domain TherJR_0845 PF01925 Sulfite exporter TauE/SafE TherJR_0848 PF13361 UvrD-like helicase C-terminal domain TherJR_0848 PF00580 UvrD/REP helicase N-terminal domain TherJR_0849 PF10997 Alternate to MurJ TherJR_0850 PF00533 BRCA1 C Terminus (BRCT) domain TherJR_0850 PF01653 NAD-dependent DNA ligase adenylation domain TherJR_0850 PF12826 Helix-hairpin-helix motif TherJR_0850 PF03120 NAD-dependent DNA ligase OB-fold domain TherJR_0850 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TherJR_0851 PF02082 Transcriptional regulator TherJR_0852 PF01654 Cytochrome bd terminal oxidase subunit I TherJR_0853 PF02322 Cytochrome bd terminal oxidase subunit II TherJR_0854 PF02915 Rubrerythrin TherJR_0855 PF00465 Iron-containing alcohol dehydrogenase TherJR_0857 PF00082 Subtilase family TherJR_0858 PF01869 BadF/BadG/BcrA/BcrD ATPase family TherJR_0859 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TherJR_0861 PF00497 Bacterial extracellular solute-binding proteins, family 3 TherJR_0862 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0870 PF02686 Glu-tRNAGln amidotransferase C subunit TherJR_0871 PF01425 Amidase TherJR_0872 PF02934 GatB/GatE catalytic domain TherJR_0872 PF02637 GatB domain TherJR_0874 PF00682 HMGL-like TherJR_0875 PF00180 Isocitrate/isopropylmalate dehydrogenase TherJR_0880 PF02608 ABC transporter substrate-binding protein PnrA-like TherJR_0883 PF13439 Glycosyltransferase Family 4 TherJR_0883 PF00534 Glycosyl transferases group 1 TherJR_0884 PF00483 Nucleotidyl transferase TherJR_0885 PF03065 Glycosyl hydrolase family 57 TherJR_0885 PF09210 Domain of unknown function (DUF1957) TherJR_0890 PF01938 TRAM domain TherJR_0890 PF05958 tRNA (Uracil-5-)-methyltransferase TherJR_0897 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_0898 PF00082 Subtilase family TherJR_0899 PF02384 N-6 DNA Methylase TherJR_0900 PF01420 Type I restriction modification DNA specificity domain TherJR_0901 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TherJR_0901 PF11867 Domain of unknown function (DUF3387) TherJR_0901 PF18766 SWI2/SNF2 ATPase TherJR_0906 PF16363 GDP-mannose 4,6 dehydratase TherJR_0908 PF00343 Carbohydrate phosphorylase TherJR_0909 PF13396 Phospholipase_D-nuclease N-terminal TherJR_0909 PF13091 PLD-like domain TherJR_0910 PF00011 Hsp20/alpha crystallin family TherJR_0911 PF00582 Universal stress protein family TherJR_0912 PF01321 Creatinase/Prolidase N-terminal domain TherJR_0912 PF00557 Metallopeptidase family M24 TherJR_0913 PF00117 Glutamine amidotransferase class-I TherJR_0913 PF00958 GMP synthase C terminal domain TherJR_0913 PF02540 NAD synthase TherJR_0917 PF07690 Major Facilitator Superfamily TherJR_0918 PF01047 MarR family TherJR_0922 PF03109 ABC1 family TherJR_0923 PF00005 ABC transporter TherJR_0924 PF01458 Uncharacterized protein family (UPF0051) TherJR_0925 PF00012 Hsp70 protein TherJR_0926 PF01556 DnaJ C terminal domain TherJR_0926 PF00226 DnaJ domain TherJR_0928 PF07724 AAA domain (Cdc48 subfamily) TherJR_0928 PF17871 AAA lid domain TherJR_0928 PF02861 Clp amino terminal domain, pathogenicity island component TherJR_0928 PF10431 C-terminal, D2-small domain, of ClpB protein TherJR_0928 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_0929 PF01255 Putative undecaprenyl diphosphate synthase TherJR_0931 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_0931 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TherJR_0932 PF17925 Tetracyclin repressor-like, C-terminal domain TherJR_0932 PF00440 Bacterial regulatory proteins, tetR family TherJR_0933 PF00873 AcrB/AcrD/AcrF family TherJR_0934 PF00291 Pyridoxal-phosphate dependent enzyme TherJR_0937 PF01593 Flavin containing amine oxidoreductase TherJR_0941 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TherJR_0941 PF00175 Oxidoreductase NAD-binding domain TherJR_0942 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TherJR_0942 PF01568 Molydopterin dinucleotide binding domain TherJR_0942 PF00384 Molybdopterin oxidoreductase TherJR_0942 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_0942 PF12838 4Fe-4S dicluster domain TherJR_0943 PF03466 LysR substrate binding domain TherJR_0943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TherJR_0944 PF03061 Thioesterase superfamily TherJR_0945 PF00313 'Cold-shock' DNA-binding domain TherJR_0947 PF06508 Queuosine biosynthesis protein QueC TherJR_0948 PF07732 Multicopper oxidase TherJR_0948 PF00394 Multicopper oxidase TherJR_0948 PF07731 Multicopper oxidase TherJR_0949 PF00484 Carbonic anhydrase TherJR_0950 PF08281 Sigma-70, region 4 TherJR_0950 PF04542 Sigma-70 region 2 TherJR_0954 PF00535 Glycosyl transferase family 2 TherJR_0954 PF13181 Tetratricopeptide repeat TherJR_0955 PF13181 Tetratricopeptide repeat TherJR_0955 PF00535 Glycosyl transferase family 2 TherJR_0956 PF00535 Glycosyl transferase family 2 TherJR_0956 PF13181 Tetratricopeptide repeat TherJR_0958 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus TherJR_0958 PF05175 Methyltransferase small domain TherJR_0960 PF13181 Tetratricopeptide repeat TherJR_0960 PF00535 Glycosyl transferase family 2 TherJR_0963 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TherJR_0963 PF00476 DNA polymerase family A TherJR_0963 PF01367 5'-3' exonuclease, C-terminal SAM fold TherJR_0964 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TherJR_0964 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TherJR_0964 PF06827 Zinc finger found in FPG and IleRS TherJR_0965 PF02659 Putative manganese efflux pump TherJR_0966 PF01121 Dephospho-CoA kinase TherJR_0967 PF01464 Transglycosylase SLT domain TherJR_0967 PF00497 Bacterial extracellular solute-binding proteins, family 3 TherJR_0968 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TherJR_0969 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_0971 PF00005 ABC transporter TherJR_0971 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_0972 PF00005 ABC transporter TherJR_0972 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_0978 PF08331 Domain of unknown function (DUF1730) TherJR_0983 PF02607 B12 binding domain TherJR_0983 PF02310 B12 binding domain TherJR_0984 PF02310 B12 binding domain TherJR_0984 PF02607 B12 binding domain TherJR_0985 PF13426 PAS domain TherJR_0985 PF02954 Bacterial regulatory protein, Fis family TherJR_0985 PF00158 Sigma-54 interaction domain TherJR_0986 PF00809 Pterin binding enzyme TherJR_0986 PF02607 B12 binding domain TherJR_0986 PF02310 B12 binding domain TherJR_0986 PF02574 Homocysteine S-methyltransferase TherJR_0986 PF02965 Vitamin B12 dependent methionine synthase, activation domain TherJR_0989 PF02492 CobW/HypB/UreG, nucleotide-binding domain TherJR_0989 PF07683 Cobalamin synthesis protein cobW C-terminal domain TherJR_0991 PF13187 4Fe-4S dicluster domain TherJR_0991 PF01645 Conserved region in glutamate synthase TherJR_0994 PF00563 EAL domain TherJR_0994 PF03707 Bacterial signalling protein N terminal repeat TherJR_0994 PF00990 Diguanylate cyclase, GGDEF domain TherJR_0997 PF00563 EAL domain TherJR_0997 PF03707 Bacterial signalling protein N terminal repeat TherJR_0997 PF00990 Diguanylate cyclase, GGDEF domain TherJR_1002 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1003 PF00005 ABC transporter TherJR_1005 PF12705 PD-(D/E)XK nuclease superfamily TherJR_1005 PF13361 UvrD-like helicase C-terminal domain TherJR_1006 PF12705 PD-(D/E)XK nuclease superfamily TherJR_1006 PF00580 UvrD/REP helicase N-terminal domain TherJR_1006 PF13361 UvrD-like helicase C-terminal domain TherJR_1014 PF02698 DUF218 domain TherJR_1015 PF00037 4Fe-4S binding domain TherJR_1015 PF02256 Iron hydrogenase small subunit TherJR_1015 PF02906 Iron only hydrogenase large subunit, C-terminal domain TherJR_1015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TherJR_1016 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TherJR_1016 PF00037 4Fe-4S binding domain TherJR_1016 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TherJR_1018 PF03747 ADP-ribosylglycohydrolase TherJR_1027 PF01578 Cytochrome C assembly protein TherJR_1033 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like TherJR_1034 PF08864 UPF0302 domain TherJR_1034 PF08858 IDEAL domain TherJR_1036 PF07733 Bacterial DNA polymerase III alpha NTPase domain TherJR_1036 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TherJR_1036 PF14579 Helix-hairpin-helix motif TherJR_1036 PF02811 PHP domain TherJR_1038 PF11798 IMS family HHH motif TherJR_1038 PF11799 impB/mucB/samB family C-terminal domain TherJR_1038 PF00817 impB/mucB/samB family TherJR_1039 PF01520 N-acetylmuramoyl-L-alanine amidase TherJR_1039 PF05036 Sporulation related domain TherJR_1040 PF00391 PEP-utilising enzyme, mobile domain TherJR_1040 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TherJR_1041 PF07690 Major Facilitator Superfamily TherJR_1043 PF03264 NapC/NirT cytochrome c family, N-terminal region TherJR_1046 PF01966 HD domain TherJR_1050 PF03734 L,D-transpeptidase catalytic domain TherJR_1050 PF01476 LysM domain TherJR_1057 PF00491 Arginase family TherJR_1059 PF04542 Sigma-70 region 2 TherJR_1065 PF00270 DEAD/DEAH box helicase TherJR_1065 PF00271 Helicase conserved C-terminal domain TherJR_1065 PF09369 Domain of unknown function (DUF1998) TherJR_1066 PF00271 Helicase conserved C-terminal domain TherJR_1066 PF09369 Domain of unknown function (DUF1998) TherJR_1066 PF00270 DEAD/DEAH box helicase TherJR_1070 PF00271 Helicase conserved C-terminal domain TherJR_1070 PF00176 SNF2 family N-terminal domain TherJR_1073 PF01555 DNA methylase TherJR_1073 PF18273 Type III R-M EcoP15I C-terminal domain TherJR_1074 PF04851 Type III restriction enzyme, res subunit TherJR_1074 PF08774 VRR-NUC domain TherJR_1081 PF13749 Putative ATP-dependent DNA helicase recG C-terminal TherJR_1081 PF00270 DEAD/DEAH box helicase TherJR_1081 PF17191 RecG wedge domain TherJR_1084 PF08299 Bacterial dnaA protein helix-turn-helix TherJR_1084 PF00308 Bacterial dnaA protein TherJR_1084 PF11638 DnaA N-terminal domain TherJR_1090 PF00881 Nitroreductase family TherJR_1091 PF03458 UPF0126 domain TherJR_1092 PF04545 Sigma-70, region 4 TherJR_1092 PF04542 Sigma-70 region 2 TherJR_1093 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_1093 PF00005 ABC transporter TherJR_1094 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_1094 PF00005 ABC transporter TherJR_1095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TherJR_1097 PF12911 N-terminal TM domain of oligopeptide transport permease C TherJR_1097 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1101 PF14398 YheC/D like ATP-grasp TherJR_1102 PF14398 YheC/D like ATP-grasp TherJR_1103 PF14398 YheC/D like ATP-grasp TherJR_1104 PF14398 YheC/D like ATP-grasp TherJR_1106 PF10628 Outer spore coat protein E (CotE) TherJR_1108 PF00005 ABC transporter TherJR_1111 PF00171 Aldehyde dehydrogenase family TherJR_1111 PF00465 Iron-containing alcohol dehydrogenase TherJR_1112 PF00873 AcrB/AcrD/AcrF family TherJR_1113 PF01177 Asp/Glu/Hydantoin racemase TherJR_1114 PF00343 Carbohydrate phosphorylase TherJR_1114 PF11897 Protein of unknown function (DUF3417) TherJR_1115 PF02416 mttA/Hcf106 family TherJR_1116 PF00348 Polyprenyl synthetase TherJR_1118 PF03264 NapC/NirT cytochrome c family, N-terminal region TherJR_1126 PF01578 Cytochrome C assembly protein TherJR_1127 PF02310 B12 binding domain TherJR_1127 PF04055 Radical SAM superfamily TherJR_1131 PF05140 ResB-like family TherJR_1132 PF01578 Cytochrome C assembly protein TherJR_1133 PF10414 Sirohaem synthase dimerisation region TherJR_1133 PF14824 Sirohaem biosynthesis protein central TherJR_1133 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_1134 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TherJR_1134 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TherJR_1134 PF01488 Shikimate / quinate 5-dehydrogenase TherJR_1135 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TherJR_1135 PF03900 Porphobilinogen deaminase, C-terminal domain TherJR_1137 PF13186 Iron-sulfur cluster-binding domain TherJR_1137 PF04055 Radical SAM superfamily TherJR_1138 PF00490 Delta-aminolevulinic acid dehydratase TherJR_1139 PF13186 Iron-sulfur cluster-binding domain TherJR_1139 PF04055 Radical SAM superfamily TherJR_1141 PF17805 AsnC-like ligand binding domain TherJR_1142 PF00202 Aminotransferase class-III TherJR_1144 PF03705 CheR methyltransferase, all-alpha domain TherJR_1144 PF01739 CheR methyltransferase, SAM binding domain TherJR_1145 PF02491 SHS2 domain inserted in FTSA TherJR_1147 PF11871 Domain of unknown function (DUF3391) TherJR_1147 PF01966 HD domain TherJR_1149 PF00860 Permease family TherJR_1153 PF02540 NAD synthase TherJR_1153 PF00795 Carbon-nitrogen hydrolase TherJR_1156 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TherJR_1157 PF03063 Prismane/CO dehydrogenase family TherJR_1158 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit TherJR_1158 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain TherJR_1159 PF04060 Putative Fe-S cluster TherJR_1159 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TherJR_1160 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TherJR_1161 PF00809 Pterin binding enzyme TherJR_1162 PF01593 Flavin containing amine oxidoreductase TherJR_1166 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_1166 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TherJR_1170 PF08141 Small acid-soluble spore protein H family TherJR_1171 PF09335 SNARE associated Golgi protein TherJR_1176 PF07478 D-ala D-ala ligase C-terminus TherJR_1176 PF01820 D-ala D-ala ligase N-terminus TherJR_1177 PF01709 Transcriptional regulator TherJR_1180 PF02075 Crossover junction endodeoxyribonuclease RuvC TherJR_1183 PF02677 Epoxyqueuosine reductase QueH TherJR_1185 PF04542 Sigma-70 region 2 TherJR_1187 PF08486 Stage II sporulation protein TherJR_1188 PF02547 Queuosine biosynthesis protein TherJR_1189 PF00892 EamA-like transporter family TherJR_1190 PF00892 EamA-like transporter family TherJR_1191 PF00497 Bacterial extracellular solute-binding proteins, family 3 TherJR_1192 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1193 PF00005 ABC transporter TherJR_1194 PF06130 Phosphate propanoyltransferase TherJR_1195 PF01627 Hpt domain TherJR_1195 PF00512 His Kinase A (phospho-acceptor) domain TherJR_1195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_1195 PF00672 HAMP domain TherJR_1195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TherJR_1195 PF00072 Response regulator receiver domain TherJR_1196 PF00486 Transcriptional regulatory protein, C terminal TherJR_1196 PF00072 Response regulator receiver domain TherJR_1198 PF02335 Cytochrome c552 TherJR_1200 PF01702 Queuine tRNA-ribosyltransferase TherJR_1203 PF07549 SecD/SecF GG Motif TherJR_1203 PF02355 Protein export membrane protein TherJR_1204 PF02355 Protein export membrane protein TherJR_1204 PF07549 SecD/SecF GG Motif TherJR_1205 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TherJR_1205 PF17768 RecJ OB domain TherJR_1205 PF02272 DHHA1 domain TherJR_1205 PF01368 DHH family TherJR_1206 PF13291 ACT domain TherJR_1206 PF04607 Region found in RelA / SpoT proteins TherJR_1206 PF02824 TGS domain TherJR_1207 PF02580 D-Tyr-tRNA(Tyr) deacylase TherJR_1208 PF00753 Metallo-beta-lactamase superfamily TherJR_1209 PF01522 Polysaccharide deacetylase TherJR_1211 PF02811 PHP domain TherJR_1212 PF02254 TrkA-N domain TherJR_1212 PF02080 TrkA-C domain TherJR_1216 PF01476 LysM domain TherJR_1220 PF00486 Transcriptional regulatory protein, C terminal TherJR_1220 PF00072 Response regulator receiver domain TherJR_1221 PF00512 His Kinase A (phospho-acceptor) domain TherJR_1221 PF18698 Histidine kinase sensor domain TherJR_1221 PF00989 PAS fold TherJR_1221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_1221 PF00672 HAMP domain TherJR_1222 PF13183 4Fe-4S dicluster domain TherJR_1222 PF02754 Cysteine-rich domain TherJR_1222 PF02665 Nitrate reductase gamma subunit TherJR_1229 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TherJR_1230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TherJR_1231 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1232 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1232 PF12911 N-terminal TM domain of oligopeptide transport permease C TherJR_1233 PF00005 ABC transporter TherJR_1233 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_1234 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_1234 PF00005 ABC transporter TherJR_1235 PF01209 ubiE/COQ5 methyltransferase family TherJR_1240 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1241 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1241 PF12911 N-terminal TM domain of oligopeptide transport permease C TherJR_1242 PF00005 ABC transporter TherJR_1242 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TherJR_1243 PF13649 Methyltransferase domain TherJR_1246 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_1246 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TherJR_1248 PF02001 Protein of unknown function DUF134 TherJR_1254 PF02514 CobN/Magnesium Chelatase TherJR_1255 PF06452 Carbohydrate family 9 binding domain-like TherJR_1255 PF02018 Carbohydrate binding domain TherJR_1255 PF00331 Glycosyl hydrolase family 10 TherJR_1255 PF00395 S-layer homology domain TherJR_1259 PF00005 ABC transporter TherJR_1262 PF01891 Cobalt uptake substrate-specific transmembrane region TherJR_1263 PF02553 Cobalt transport protein component CbiN TherJR_1264 PF02361 Cobalt transport protein TherJR_1265 PF00005 ABC transporter TherJR_1266 PF02571 Precorrin-6x reductase CbiJ/CobK TherJR_1268 PF02525 Flavodoxin-like fold TherJR_1270 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_1270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TherJR_1274 PF01544 CorA-like Mg2+ transporter protein TherJR_1277 PF00154 recA bacterial DNA recombination protein TherJR_1278 PF02631 RecX family TherJR_1279 PF12072 Domain of unknown function (DUF3552) TherJR_1279 PF01966 HD domain TherJR_1279 PF00013 KH domain TherJR_1281 PF13277 YmdB-like protein TherJR_1282 PF04232 Stage V sporulation protein S (SpoVS) TherJR_1283 PF01244 Membrane dipeptidase (Peptidase family M19) TherJR_1284 PF00155 Aminotransferase class I and II TherJR_1286 PF01476 LysM domain TherJR_1286 PF00877 NlpC/P60 family TherJR_1286 PF08239 Bacterial SH3 domain TherJR_1287 PF00565 Staphylococcal nuclease homologue TherJR_1288 PF00324 Amino acid permease TherJR_1291 PF11799 impB/mucB/samB family C-terminal domain TherJR_1291 PF11798 IMS family HHH motif TherJR_1291 PF00817 impB/mucB/samB family TherJR_1298 PF02687 FtsX-like permease family TherJR_1298 PF00005 ABC transporter TherJR_1298 PF12704 MacB-like periplasmic core domain TherJR_1299 PF00005 ABC transporter TherJR_1300 PF00708 Acylphosphatase TherJR_1300 PF17788 HypF Kae1-like domain TherJR_1300 PF01300 Telomere recombination TherJR_1300 PF07503 HypF finger TherJR_1301 PF01455 HupF/HypC family TherJR_1302 PF01924 Hydrogenase formation hypA family TherJR_1303 PF00586 AIR synthase related protein, N-terminal domain TherJR_1303 PF02769 AIR synthase related protein, C-terminal domain TherJR_1306 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TherJR_1307 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TherJR_1307 PF07685 CobB/CobQ-like glutamine amidotransferase domain TherJR_1308 PF03186 CobD/Cbib protein TherJR_1309 PF07685 CobB/CobQ-like glutamine amidotransferase domain TherJR_1309 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TherJR_1310 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TherJR_1310 PF12557 Cob(I)alamin adenosyltransferase N terminal TherJR_1311 PF00288 GHMP kinases N terminal domain TherJR_1312 PF00155 Aminotransferase class I and II TherJR_1313 PF00300 Histidine phosphatase superfamily (branch 1) TherJR_1315 PF01979 Amidohydrolase family TherJR_1315 PF13382 Adenine deaminase C-terminal domain TherJR_1319 PF00571 CBS domain TherJR_1319 PF00478 IMP dehydrogenase / GMP reductase domain TherJR_1321 PF17871 AAA lid domain TherJR_1321 PF07724 AAA domain (Cdc48 subfamily) TherJR_1321 PF02861 Clp amino terminal domain, pathogenicity island component TherJR_1321 PF10431 C-terminal, D2-small domain, of ClpB protein TherJR_1321 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_1325 PF02421 Ferrous iron transport protein B TherJR_1325 PF07670 Nucleoside recognition TherJR_1325 PF07664 Ferrous iron transport protein B C terminus TherJR_1326 PF01475 Ferric uptake regulator family TherJR_1329 PF01925 Sulfite exporter TauE/SafE TherJR_1330 PF01925 Sulfite exporter TauE/SafE TherJR_1332 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase TherJR_1332 PF04101 Glycosyltransferase family 28 C-terminal domain TherJR_1334 PF01098 Cell cycle protein TherJR_1335 PF07669 Eco57I restriction-modification methylase TherJR_1335 PF12950 TaqI-like C-terminal specificity domain TherJR_1336 PF00293 NUDIX domain TherJR_1339 PF00269 Small, acid-soluble spore proteins, alpha/beta type TherJR_1341 PF13237 4Fe-4S dicluster domain TherJR_1342 PF03775 Septum formation inhibitor MinC, C-terminal domain TherJR_1342 PF05209 Septum formation inhibitor MinC, N-terminal domain TherJR_1343 PF00990 Diguanylate cyclase, GGDEF domain TherJR_1348 PF00072 Response regulator receiver domain TherJR_1348 PF00486 Transcriptional regulatory protein, C terminal TherJR_1349 PF18698 Histidine kinase sensor domain TherJR_1349 PF00672 HAMP domain TherJR_1349 PF00989 PAS fold TherJR_1349 PF00512 His Kinase A (phospho-acceptor) domain TherJR_1349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_1351 PF01979 Amidohydrolase family TherJR_1353 PF04015 Domain of unknown function (DUF362) TherJR_1355 PF04284 Protein of unknown function (DUF441) TherJR_1356 PF00318 Ribosomal protein S2 TherJR_1357 PF00889 Elongation factor TS TherJR_1358 PF00696 Amino acid kinase family TherJR_1359 PF01765 Ribosome recycling factor TherJR_1361 PF00037 4Fe-4S binding domain TherJR_1362 PF01255 Putative undecaprenyl diphosphate synthase TherJR_1364 PF01594 AI-2E family transporter TherJR_1365 PF13288 DXP reductoisomerase C-terminal domain TherJR_1365 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TherJR_1365 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TherJR_1366 PF02163 Peptidase family M50 TherJR_1366 PF13180 PDZ domain TherJR_1367 PF04551 GcpE protein TherJR_1368 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TherJR_1368 PF03129 Anticodon binding domain TherJR_1368 PF04073 Aminoacyl-tRNA editing domain TherJR_1369 PF00535 Glycosyl transferase family 2 TherJR_1370 PF02308 MgtC family TherJR_1371 PF00929 Exonuclease TherJR_1371 PF02811 PHP domain TherJR_1371 PF14579 Helix-hairpin-helix motif TherJR_1371 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TherJR_1371 PF07733 Bacterial DNA polymerase III alpha NTPase domain TherJR_1371 PF11490 DNA polymerase III polC-type N-terminus II TherJR_1373 PF02576 RimP N-terminal domain TherJR_1373 PF17384 RimP C-terminal SH3 domain TherJR_1374 PF13184 NusA-like KH domain TherJR_1374 PF08529 NusA N-terminal domain TherJR_1374 PF00575 S1 RNA binding domain TherJR_1375 PF04296 Protein of unknown function (DUF448) TherJR_1376 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family TherJR_1377 PF11987 Translation-initiation factor 2 TherJR_1377 PF11987 Translation-initiation factor 2 TherJR_1377 PF00009 Elongation factor Tu GTP binding domain TherJR_1377 PF04760 Translation initiation factor IF-2, N-terminal region TherJR_1377 PF04760 Translation initiation factor IF-2, N-terminal region TherJR_1377 PF00009 Elongation factor Tu GTP binding domain TherJR_1378 PF02033 Ribosome-binding factor A TherJR_1379 PF02272 DHHA1 domain TherJR_1379 PF01368 DHH family TherJR_1380 PF16198 tRNA pseudouridylate synthase B C-terminal domain TherJR_1380 PF01509 TruB family pseudouridylate synthase (N terminal domain) TherJR_1381 PF01687 Riboflavin kinase TherJR_1381 PF06574 FAD synthetase TherJR_1384 PF00312 Ribosomal protein S15 TherJR_1385 PF03725 3' exoribonuclease family, domain 2 TherJR_1385 PF01138 3' exoribonuclease family, domain 1 TherJR_1385 PF00575 S1 RNA binding domain TherJR_1385 PF00013 KH domain TherJR_1385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TherJR_1386 PF01261 Xylose isomerase-like TIM barrel TherJR_1387 PF07486 Cell Wall Hydrolase TherJR_1387 PF01471 Putative peptidoglycan binding domain TherJR_1388 PF00877 NlpC/P60 family TherJR_1388 PF01476 LysM domain TherJR_1389 PF00704 Glycosyl hydrolases family 18 TherJR_1389 PF01476 LysM domain TherJR_1390 PF01522 Polysaccharide deacetylase TherJR_1391 PF00768 D-alanyl-D-alanine carboxypeptidase TherJR_1391 PF07943 Penicillin-binding protein 5, C-terminal domain TherJR_1392 PF05193 Peptidase M16 inactive domain TherJR_1392 PF00675 Insulinase (Peptidase family M16) TherJR_1393 PF00692 dUTPase TherJR_1396 PF05173 Dihydrodipicolinate reductase, C-terminus TherJR_1396 PF01113 Dihydrodipicolinate reductase, N-terminus TherJR_1397 PF16924 Dipicolinate synthase subunit A N-terminal domain TherJR_1397 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TherJR_1398 PF02441 Flavoprotein TherJR_1399 PF02774 Semialdehyde dehydrogenase, dimerisation domain TherJR_1399 PF01118 Semialdehyde dehydrogenase, NAD binding domain TherJR_1400 PF13840 ACT domain TherJR_1400 PF00696 Amino acid kinase family TherJR_1401 PF00701 Dihydrodipicolinate synthetase family TherJR_1402 PF00753 Metallo-beta-lactamase superfamily TherJR_1402 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TherJR_1402 PF17770 Ribonuclease J C-terminal domain TherJR_1403 PF00574 Clp protease TherJR_1405 PF02673 Bacitracin resistance protein BacA TherJR_1406 PF17854 FtsK alpha domain TherJR_1406 PF09397 Ftsk gamma domain TherJR_1406 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TherJR_1406 PF01580 FtsK/SpoIIIE family TherJR_1407 PF02608 ABC transporter substrate-binding protein PnrA-like TherJR_1411 PF00535 Glycosyl transferase family 2 TherJR_1412 PF00884 Sulfatase TherJR_1418 PF13464 Domain of unknown function (DUF4115) TherJR_1427 PF01578 Cytochrome C assembly protein TherJR_1429 PF04461 Protein of unknown function (DUF520) TherJR_1432 PF11842 Domain of unknown function (DUF3362) TherJR_1432 PF04055 Radical SAM superfamily TherJR_1432 PF08497 Radical SAM N-terminal TherJR_1433 PF00919 Uncharacterized protein family UPF0004 TherJR_1433 PF04055 Radical SAM superfamily TherJR_1433 PF18693 TRAM domain TherJR_1434 PF01066 CDP-alcohol phosphatidyltransferase TherJR_1436 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_1436 PF01434 Peptidase family M41 TherJR_1436 PF06480 FtsH Extracellular TherJR_1436 PF17862 AAA+ lid domain TherJR_1437 PF02464 Competence-damaged protein TherJR_1437 PF18146 Damage-inducible protein CinA KH domain TherJR_1437 PF00994 Probable molybdopterin binding domain TherJR_1439 PF00270 DEAD/DEAH box helicase TherJR_1439 PF00271 Helicase conserved C-terminal domain TherJR_1440 PF01966 HD domain TherJR_1440 PF11871 Domain of unknown function (DUF3391) TherJR_1441 PF13237 4Fe-4S dicluster domain TherJR_1443 PF02581 Thiamine monophosphate synthase TherJR_1445 PF01061 ABC-2 type transporter TherJR_1446 PF00005 ABC transporter TherJR_1448 PF02645 Uncharacterised protein, DegV family COG1307 TherJR_1449 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TherJR_1449 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TherJR_1450 PF00202 Aminotransferase class-III TherJR_1461 PF04986 Putative transposase TherJR_1461 PF14319 Transposase zinc-binding domain TherJR_1462 PF00589 Phage integrase family TherJR_1462 PF02899 Phage integrase, N-terminal SAM-like domain TherJR_1467 PF00872 Transposase, Mutator family TherJR_1469 PF04029 2-phosphosulpholactate phosphatase TherJR_1470 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) TherJR_1471 PF01747 ATP-sulfurylase TherJR_1471 PF14306 PUA-like domain TherJR_1472 PF00005 ABC transporter TherJR_1473 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_1474 PF09084 NMT1/THI5 like TherJR_1478 PF07690 Major Facilitator Superfamily TherJR_1479 PF10942 Protein of unknown function (DUF2619) TherJR_1483 PF03741 Integral membrane protein TerC family TherJR_1485 PF04239 Protein of unknown function (DUF421) TherJR_1487 PF04055 Radical SAM superfamily TherJR_1487 PF01938 TRAM domain TherJR_1487 PF00919 Uncharacterized protein family UPF0004 TherJR_1488 PF06133 Control of competence regulator ComK, YlbF/YmcA TherJR_1489 PF05192 MutS domain III TherJR_1489 PF05188 MutS domain II TherJR_1489 PF05190 MutS family domain IV TherJR_1489 PF01624 MutS domain I TherJR_1489 PF00488 MutS domain V TherJR_1491 PF00850 Histone deacetylase domain TherJR_1492 PF08676 MutL C terminal dimerisation domain TherJR_1492 PF01119 DNA mismatch repair protein, C-terminal domain TherJR_1493 PF04445 Putative SAM-dependent methyltransferase TherJR_1495 PF17209 Hfq protein TherJR_1496 PF00216 Bacterial DNA-binding protein TherJR_1497 PF17866 AAA lid domain TherJR_1497 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_1498 PF06838 Methionine gamma-lyase TherJR_1499 PF00072 Response regulator receiver domain TherJR_1499 PF00486 Transcriptional regulatory protein, C terminal TherJR_1501 PF00717 Peptidase S24-like TherJR_1501 PF01726 LexA DNA binding domain TherJR_1505 PF05681 Fumarate hydratase (Fumerase) TherJR_1505 PF05683 Fumarase C-terminus TherJR_1506 PF03949 Malic enzyme, NAD binding domain TherJR_1506 PF00390 Malic enzyme, N-terminal domain TherJR_1512 PF04542 Sigma-70 region 2 TherJR_1512 PF04545 Sigma-70, region 4 TherJR_1512 PF04539 Sigma-70 region 3 TherJR_1514 PF03975 CheD chemotactic sensory transduction TherJR_1515 PF04509 CheC-like family TherJR_1516 PF01584 CheW-like domain TherJR_1517 PF01627 Hpt domain TherJR_1517 PF02895 Signal transducing histidine kinase, homodimeric domain TherJR_1517 PF07194 P2 response regulator binding domain TherJR_1517 PF01584 CheW-like domain TherJR_1517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_1518 PF01339 CheB methylesterase TherJR_1518 PF00072 Response regulator receiver domain TherJR_1520 PF10609 NUBPL iron-transfer P-loop NTPase TherJR_1521 PF00448 SRP54-type protein, GTPase domain TherJR_1522 PF00771 FHIPEP family TherJR_1523 PF01312 FlhB HrpN YscU SpaS Family TherJR_1524 PF01311 Bacterial export proteins, family 1 TherJR_1525 PF01313 Bacterial export proteins, family 3 TherJR_1526 PF00813 FliP family TherJR_1528 PF00072 Response regulator receiver domain TherJR_1529 PF04509 CheC-like family TherJR_1529 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TherJR_1530 PF02154 Flagellar motor switch protein FliM TherJR_1530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TherJR_1532 PF06289 Flagellar and Swarming motility proteins TherJR_1533 PF07559 Flagellar basal body protein FlaE TherJR_1533 PF00460 Flagella basal body rod protein TherJR_1533 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TherJR_1535 PF03963 Flagellar hook capping protein - N-terminal region TherJR_1539 PF18269 T3SS EscN ATPase C-terminal domain TherJR_1539 PF02874 ATP synthase alpha/beta family, beta-barrel domain TherJR_1539 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TherJR_1540 PF02108 Flagellar assembly protein FliH TherJR_1541 PF14841 FliG middle domain TherJR_1541 PF01706 FliG C-terminal domain TherJR_1541 PF14842 FliG N-terminal domain TherJR_1542 PF08345 Flagellar M-ring protein C-terminal TherJR_1542 PF01514 Secretory protein of YscJ/FliF family TherJR_1543 PF02049 Flagellar hook-basal body complex protein FliE TherJR_1544 PF00460 Flagella basal body rod protein TherJR_1544 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TherJR_1545 PF00460 Flagella basal body rod protein TherJR_1546 PF08222 CodY helix-turn-helix domain TherJR_1546 PF06018 CodY GAF-like domain TherJR_1547 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_1547 PF07724 AAA domain (Cdc48 subfamily) TherJR_1547 PF10431 C-terminal, D2-small domain, of ClpB protein TherJR_1548 PF00227 Proteasome subunit TherJR_1549 PF02899 Phage integrase, N-terminal SAM-like domain TherJR_1549 PF00589 Phage integrase family TherJR_1550 PF01134 Glucose inhibited division protein A TherJR_1551 PF01131 DNA topoisomerase TherJR_1551 PF01751 Toprim domain TherJR_1551 PF01396 Topoisomerase DNA binding C4 zinc finger TherJR_1552 PF02481 DNA recombination-mediator protein A TherJR_1552 PF17782 DprA winged helix domain TherJR_1553 PF01068 ATP dependent DNA ligase domain TherJR_1554 PF01068 ATP dependent DNA ligase domain TherJR_1555 PF02735 Ku70/Ku80 beta-barrel domain TherJR_1559 PF07486 Cell Wall Hydrolase TherJR_1562 PF02570 Precorrin-8X methylmutase TherJR_1563 PF01903 CbiX TherJR_1565 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TherJR_1565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_1566 PF11760 Cobalamin synthesis G N-terminal TherJR_1566 PF11761 Cobalamin biosynthesis central region TherJR_1566 PF01890 Cobalamin synthesis G C-terminus TherJR_1567 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_1568 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_1569 PF05175 Methyltransferase small domain TherJR_1570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TherJR_1571 PF01888 CbiD TherJR_1574 PF00072 Response regulator receiver domain TherJR_1576 PF08239 Bacterial SH3 domain TherJR_1576 PF01520 N-acetylmuramoyl-L-alanine amidase TherJR_1579 PF09547 Stage IV sporulation protein A (spore_IV_A) TherJR_1580 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TherJR_1580 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TherJR_1581 PF02660 Glycerol-3-phosphate acyltransferase TherJR_1582 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TherJR_1582 PF01926 50S ribosome-binding GTPase TherJR_1583 PF13180 PDZ domain TherJR_1587 PF14045 YIEGIA protein TherJR_1590 PF02401 LytB protein TherJR_1590 PF00575 S1 RNA binding domain TherJR_1591 PF01553 Acyltransferase TherJR_1592 PF02224 Cytidylate kinase TherJR_1595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_1595 PF02743 Cache domain TherJR_1595 PF00672 HAMP domain TherJR_1596 PF01584 CheW-like domain TherJR_1597 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TherJR_1598 PF02153 Prephenate dehydrogenase TherJR_1598 PF01842 ACT domain TherJR_1599 PF00793 DAHP synthetase I family TherJR_1599 PF18152 DAHP synthase ferredoxin-like domain TherJR_1600 PF00793 DAHP synthetase I family TherJR_1600 PF18152 DAHP synthase ferredoxin-like domain TherJR_1601 PF00290 Tryptophan synthase alpha chain TherJR_1602 PF00291 Pyridoxal-phosphate dependent enzyme TherJR_1603 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TherJR_1604 PF00218 Indole-3-glycerol phosphate synthase TherJR_1605 PF00591 Glycosyl transferase family, a/b domain TherJR_1605 PF02885 Glycosyl transferase family, helical bundle domain TherJR_1606 PF00117 Glutamine amidotransferase class-I TherJR_1608 PF07736 Chorismate mutase type I TherJR_1612 PF04172 LrgB-like family TherJR_1613 PF03788 LrgA family TherJR_1615 PF01810 LysE type translocator TherJR_1623 PF01966 HD domain TherJR_1623 PF00013 KH domain TherJR_1623 PF12072 Domain of unknown function (DUF3552) TherJR_1627 PF00849 RNA pseudouridylate synthase TherJR_1627 PF01479 S4 domain TherJR_1628 PF07670 Nucleoside recognition TherJR_1629 PF07670 Nucleoside recognition TherJR_1630 PF01134 Glucose inhibited division protein A TherJR_1630 PF13932 GidA associated domain TherJR_1631 PF09579 Sporulation protein YtfJ (Spore_YtfJ) TherJR_1634 PF13247 4Fe-4S dicluster domain TherJR_1636 PF04079 Segregation and condensation complex subunit ScpB TherJR_1637 PF02616 Segregation and condensation protein ScpA TherJR_1638 PF00579 tRNA synthetases class I (W and Y) TherJR_1639 PF02163 Peptidase family M50 TherJR_1640 PF01743 Poly A polymerase head domain TherJR_1640 PF12627 Probable RNA and SrmB- binding site of polymerase A TherJR_1640 PF13735 tRNA nucleotidyltransferase domain 2 putative TherJR_1641 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TherJR_1641 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TherJR_1642 PF01906 Putative heavy-metal-binding TherJR_1643 PF00188 Cysteine-rich secretory protein family TherJR_1644 PF00893 Small Multidrug Resistance protein TherJR_1645 PF00293 NUDIX domain TherJR_1647 PF01869 BadF/BadG/BcrA/BcrD ATPase family TherJR_1650 PF03323 Bacillus/Clostridium GerA spore germination protein TherJR_1651 PF14097 Stage V sporulation protein AE1 TherJR_1652 PF03862 SpoVAC/SpoVAEB sporulation membrane protein TherJR_1653 PF07451 Stage V sporulation protein AD (SpoVAD) TherJR_1654 PF03862 SpoVAC/SpoVAEB sporulation membrane protein TherJR_1656 PF04539 Sigma-70 region 3 TherJR_1656 PF04542 Sigma-70 region 2 TherJR_1656 PF04545 Sigma-70, region 4 TherJR_1657 PF13581 Histidine kinase-like ATPase domain TherJR_1658 PF01740 STAS domain TherJR_1659 PF07943 Penicillin-binding protein 5, C-terminal domain TherJR_1659 PF00768 D-alanyl-D-alanine carboxypeptidase TherJR_1660 PF13520 Amino acid permease TherJR_1663 PF00591 Glycosyl transferase family, a/b domain TherJR_1663 PF02885 Glycosyl transferase family, helical bundle domain TherJR_1663 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TherJR_1664 PF01048 Phosphorylase superfamily TherJR_1665 PF01676 Metalloenzyme superfamily TherJR_1666 PF00589 Phage integrase family TherJR_1666 PF02899 Phage integrase, N-terminal SAM-like domain TherJR_1673 PF01546 Peptidase family M20/M25/M40 TherJR_1673 PF07687 Peptidase dimerisation domain TherJR_1681 PF13193 AMP-binding enzyme C-terminal domain TherJR_1681 PF00501 AMP-binding enzyme TherJR_1683 PF01515 Phosphate acetyl/butaryl transferase TherJR_1684 PF00989 PAS fold TherJR_1684 PF00158 Sigma-54 interaction domain TherJR_1684 PF02954 Bacterial regulatory protein, Fis family TherJR_1686 PF00535 Glycosyl transferase family 2 TherJR_1689 PF08769 Sporulation initiation factor Spo0A C terminal TherJR_1689 PF00072 Response regulator receiver domain TherJR_1690 PF05580 SpoIVB peptidase S55 TherJR_1690 PF17820 PDZ domain TherJR_1691 PF02463 RecF/RecN/SMC N terminal domain TherJR_1692 PF02863 Arginine repressor, C-terminal domain TherJR_1692 PF01316 Arginine repressor, DNA binding domain TherJR_1693 PF06962 Putative rRNA methylase TherJR_1694 PF01513 ATP-NAD kinase TherJR_1698 PF01728 FtsJ-like methyltransferase TherJR_1698 PF01479 S4 domain TherJR_1699 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TherJR_1699 PF02779 Transketolase, pyrimidine binding domain TherJR_1699 PF02780 Transketolase, C-terminal domain TherJR_1701 PF00348 Polyprenyl synthetase TherJR_1702 PF02609 Exonuclease VII small subunit TherJR_1704 PF00291 Pyridoxal-phosphate dependent enzyme TherJR_1706 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TherJR_1706 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TherJR_1707 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_1707 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TherJR_1708 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TherJR_1708 PF00175 Oxidoreductase NAD-binding domain TherJR_1710 PF01476 LysM domain TherJR_1712 PF01545 Cation efflux family TherJR_1712 PF16916 Dimerisation domain of Zinc Transporter TherJR_1714 PF00814 Glycoprotease family TherJR_1715 PF01029 NusB family TherJR_1718 PF03780 Asp23 family, cell envelope-related function TherJR_1719 PF00289 Biotin carboxylase, N-terminal domain TherJR_1719 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TherJR_1719 PF02785 Biotin carboxylase C-terminal domain TherJR_1720 PF02436 Conserved carboxylase domain TherJR_1720 PF00682 HMGL-like TherJR_1720 PF00364 Biotin-requiring enzyme TherJR_1723 PF09581 Stage III sporulation protein AF (Spore_III_AF) TherJR_1724 PF09546 Stage III sporulation protein AE (spore_III_AE) TherJR_1725 PF06686 Stage III sporulation protein AC/AD protein family TherJR_1726 PF06686 Stage III sporulation protein AC/AD protein family TherJR_1727 PF09548 Stage III sporulation protein AB (spore_III_AB) TherJR_1729 PF03707 Bacterial signalling protein N terminal repeat TherJR_1729 PF00563 EAL domain TherJR_1729 PF00990 Diguanylate cyclase, GGDEF domain TherJR_1731 PF08207 Elongation factor P (EF-P) KOW-like domain TherJR_1731 PF01132 Elongation factor P (EF-P) OB domain TherJR_1731 PF09285 Elongation factor P, C-terminal TherJR_1732 PF01321 Creatinase/Prolidase N-terminal domain TherJR_1732 PF00557 Metallopeptidase family M24 TherJR_1733 PF01220 Dehydroquinase class II TherJR_1734 PF01523 Putative modulator of DNA gyrase TherJR_1738 PF00075 RNase H TherJR_1739 PF01523 Putative modulator of DNA gyrase TherJR_1740 PF01761 3-dehydroquinate synthase TherJR_1741 PF01202 Shikimate kinase TherJR_1742 PF01264 Chorismate synthase TherJR_1749 PF12019 Type II transport protein GspH TherJR_1750 PF06750 Bacterial Peptidase A24 N-terminal domain TherJR_1750 PF01478 Type IV leader peptidase family TherJR_1751 PF07963 Prokaryotic N-terminal methylation motif TherJR_1751 PF08334 Type II secretion system (T2SS), protein G TherJR_1752 PF00482 Type II secretion system (T2SS), protein F TherJR_1753 PF00437 Type II/IV secretion system protein TherJR_1754 PF00437 Type II/IV secretion system protein TherJR_1754 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TherJR_1756 PF01488 Shikimate / quinate 5-dehydrogenase TherJR_1756 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TherJR_1756 PF08501 Shikimate dehydrogenase substrate binding domain TherJR_1759 PF02875 Mur ligase family, glutamate ligase domain TherJR_1759 PF01225 Mur ligase family, catalytic domain TherJR_1759 PF08245 Mur ligase middle domain TherJR_1762 PF02575 YbaB/EbfC DNA-binding family TherJR_1765 PF00990 Diguanylate cyclase, GGDEF domain TherJR_1765 PF00072 Response regulator receiver domain TherJR_1766 PF01206 Sulfurtransferase TusA TherJR_1767 PF09105 Elongation factor SelB, winged helix TherJR_1767 PF03144 Elongation factor Tu domain 2 TherJR_1767 PF00009 Elongation factor Tu GTP binding domain TherJR_1767 PF09106 Elongation factor SelB, winged helix TherJR_1767 PF09107 Elongation factor SelB, winged helix TherJR_1768 PF00902 Sec-independent protein translocase protein (TatC) TherJR_1769 PF02416 mttA/Hcf106 family TherJR_1770 PF04055 Radical SAM superfamily TherJR_1771 PF02621 Menaquinone biosynthesis TherJR_1772 PF04055 Radical SAM superfamily TherJR_1773 PF01040 UbiA prenyltransferase family TherJR_1774 PF01209 ubiE/COQ5 methyltransferase family TherJR_1778 PF02675 S-adenosylmethionine decarboxylase TherJR_1780 PF00885 6,7-dimethyl-8-ribityllumazine synthase TherJR_1781 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TherJR_1781 PF00925 GTP cyclohydrolase II TherJR_1782 PF00677 Lumazine binding domain TherJR_1783 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TherJR_1783 PF01872 RibD C-terminal domain TherJR_1784 PF04070 Domain of unknown function (DUF378) TherJR_1785 PF00834 Ribulose-phosphate 3 epimerase family TherJR_1786 PF16745 RsgA N-terminal domain TherJR_1786 PF03193 RsgA GTPase TherJR_1787 PF03793 PASTA domain TherJR_1787 PF00069 Protein kinase domain TherJR_1788 PF00905 Penicillin binding protein transpeptidase domain TherJR_1789 PF01098 Cell cycle protein TherJR_1793 PF04055 Radical SAM superfamily TherJR_1794 PF01189 16S rRNA methyltransferase RsmB/F TherJR_1794 PF01029 NusB family TherJR_1795 PF04298 Putative neutral zinc metallopeptidase TherJR_1796 PF00551 Formyl transferase TherJR_1796 PF02911 Formyl transferase, C-terminal domain TherJR_1797 PF01327 Polypeptide deformylase TherJR_1798 PF04851 Type III restriction enzyme, res subunit TherJR_1798 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TherJR_1798 PF18074 Primosomal protein N C-terminal domain TherJR_1798 PF17764 3′ DNA-binding domain (3′BD) TherJR_1798 PF00271 Helicase conserved C-terminal domain TherJR_1800 PF00873 AcrB/AcrD/AcrF family TherJR_1801 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TherJR_1802 PF00440 Bacterial regulatory proteins, tetR family TherJR_1804 PF00395 S-layer homology domain TherJR_1804 PF00128 Alpha amylase, catalytic domain TherJR_1804 PF02903 Alpha amylase, N-terminal ig-like domain TherJR_1807 PF04127 DNA / pantothenate metabolism flavoprotein TherJR_1807 PF02441 Flavoprotein TherJR_1809 PF00625 Guanylate kinase TherJR_1810 PF04025 Domain of unknown function (DUF370) TherJR_1811 PF08340 Domain of unknown function (DUF1732) TherJR_1811 PF03755 YicC-like family, N-terminal region TherJR_1813 PF00155 Aminotransferase class I and II TherJR_1814 PF01678 Diaminopimelate epimerase TherJR_1816 PF02416 mttA/Hcf106 family TherJR_1819 PF13247 4Fe-4S dicluster domain TherJR_1820 PF00384 Molybdopterin oxidoreductase TherJR_1820 PF01568 Molydopterin dinucleotide binding domain TherJR_1820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_1821 PF01568 Molydopterin dinucleotide binding domain TherJR_1821 PF00384 Molybdopterin oxidoreductase TherJR_1821 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_1822 PF00672 HAMP domain TherJR_1822 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_1822 PF17202 Single cache domain 3 TherJR_1824 PF04463 Protein of unknown function (DUF523) TherJR_1826 PF00156 Phosphoribosyl transferase domain TherJR_1827 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TherJR_1828 PF01180 Dihydroorotate dehydrogenase TherJR_1829 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TherJR_1829 PF00970 Oxidoreductase FAD-binding domain TherJR_1829 PF00175 Oxidoreductase NAD-binding domain TherJR_1830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TherJR_1830 PF02142 MGS-like domain TherJR_1830 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TherJR_1831 PF00117 Glutamine amidotransferase class-I TherJR_1831 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TherJR_1832 PF01979 Amidohydrolase family TherJR_1833 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TherJR_1833 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TherJR_1834 PF00156 Phosphoribosyl transferase domain TherJR_1837 PF00849 RNA pseudouridylate synthase TherJR_1837 PF01479 S4 domain TherJR_1838 PF01252 Signal peptidase (SPase) II TherJR_1839 PF01258 Prokaryotic dksA/traR C4-type zinc finger TherJR_1840 PF00881 Nitroreductase family TherJR_1847 PF03264 NapC/NirT cytochrome c family, N-terminal region TherJR_1848 PF00196 Bacterial regulatory proteins, luxR family TherJR_1848 PF00072 Response regulator receiver domain TherJR_1850 PF05167 Uncharacterised ACR (DUF711) TherJR_1853 PF00583 Acetyltransferase (GNAT) family TherJR_1854 PF01740 STAS domain TherJR_1858 PF00133 tRNA synthetases class I (I, L, M and V) TherJR_1858 PF06827 Zinc finger found in FPG and IleRS TherJR_1858 PF08264 Anticodon-binding domain of tRNA TherJR_1860 PF02594 Uncharacterised ACR, YggU family COG1872 TherJR_1861 PF05103 DivIVA protein TherJR_1862 PF00579 tRNA synthetases class I (W and Y) TherJR_1862 PF01479 S4 domain TherJR_1863 PF00912 Transglycosylase TherJR_1863 PF00905 Penicillin binding protein transpeptidase domain TherJR_1865 PF01713 Smr domain TherJR_1865 PF00488 MutS domain V TherJR_1868 PF14791 DNA polymerase beta thumb TherJR_1868 PF14716 Helix-hairpin-helix domain TherJR_1868 PF02811 PHP domain TherJR_1869 PF05164 Cell division protein ZapA TherJR_1870 PF03147 Ferredoxin-fold anticodon binding domain TherJR_1870 PF01588 Putative tRNA binding domain TherJR_1870 PF03484 tRNA synthetase B5 domain TherJR_1870 PF03483 B3/4 domain TherJR_1870 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TherJR_1871 PF01409 tRNA synthetases class II core domain (F) TherJR_1871 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TherJR_1872 PF00588 SpoU rRNA Methylase family TherJR_1872 PF08032 RNA 2'-O ribose methyltransferase substrate binding TherJR_1873 PF02080 TrkA-C domain TherJR_1873 PF02254 TrkA-N domain TherJR_1874 PF02386 Cation transport protein TherJR_1875 PF00453 Ribosomal protein L20 TherJR_1876 PF01632 Ribosomal protein L35 TherJR_1877 PF00707 Translation initiation factor IF-3, C-terminal domain TherJR_1877 PF05198 Translation initiation factor IF-3, N-terminal domain TherJR_1878 PF03129 Anticodon binding domain TherJR_1878 PF02824 TGS domain TherJR_1878 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TherJR_1878 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TherJR_1879 PF04286 Protein of unknown function (DUF445) TherJR_1884 PF09827 CRISPR associated protein Cas2 TherJR_1885 PF01867 CRISPR associated protein Cas1 TherJR_1889 PF09704 CRISPR-associated protein (Cas_Cas5) TherJR_1891 PF00905 Penicillin binding protein transpeptidase domain TherJR_1891 PF03717 Penicillin-binding Protein dimerisation domain TherJR_1896 PF02618 YceG-like family TherJR_1898 PF04294 VanW like protein TherJR_1899 PF06949 Protein of unknown function (DUF1292) TherJR_1900 PF03652 Holliday junction resolvase TherJR_1901 PF00248 Aldo/keto reductase family TherJR_1904 PF02272 DHHA1 domain TherJR_1904 PF01411 tRNA synthetases class II (A) TherJR_1904 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TherJR_1906 PF01594 AI-2E family transporter TherJR_1912 PF01592 NifU-like N terminal domain TherJR_1913 PF00266 Aminotransferase class-V TherJR_1914 PF02082 Transcriptional regulator TherJR_1916 PF12002 MgsA AAA+ ATPase C terminal TherJR_1916 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_1916 PF16193 AAA C-terminal domain TherJR_1917 PF00501 AMP-binding enzyme TherJR_1917 PF13193 AMP-binding enzyme C-terminal domain TherJR_1919 PF01475 Ferric uptake regulator family TherJR_1920 PF00085 Thioredoxin TherJR_1921 PF02583 Metal-sensitive transcriptional repressor TherJR_1922 PF00899 ThiF family TherJR_1923 PF02938 GAD domain TherJR_1923 PF00152 tRNA synthetases class II (D, K and N) TherJR_1923 PF01336 OB-fold nucleic acid binding domain TherJR_1924 PF13393 Histidyl-tRNA synthetase TherJR_1924 PF03129 Anticodon binding domain TherJR_1926 PF04055 Radical SAM superfamily TherJR_1927 PF13302 Acetyltransferase (GNAT) domain TherJR_1928 PF01943 Polysaccharide biosynthesis protein TherJR_1928 PF14667 Polysaccharide biosynthesis C-terminal domain TherJR_1929 PF01975 Survival protein SurE TherJR_1930 PF14084 Protein of unknown function (DUF4264) TherJR_1931 PF01227 GTP cyclohydrolase I TherJR_1934 PF00990 Diguanylate cyclase, GGDEF domain TherJR_1936 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_1936 PF04324 BFD-like [2Fe-2S] binding domain TherJR_1936 PF18267 Rubredoxin NAD+ reductase C-terminal domain TherJR_1936 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TherJR_1937 PF03063 Prismane/CO dehydrogenase family TherJR_1938 PF13247 4Fe-4S dicluster domain TherJR_1942 PF00005 ABC transporter TherJR_1943 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TherJR_1944 PF01061 ABC-2 type transporter TherJR_1945 PF00005 ABC transporter TherJR_1945 PF13732 Domain of unknown function (DUF4162) TherJR_1947 PF00512 His Kinase A (phospho-acceptor) domain TherJR_1947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_1947 PF00989 PAS fold TherJR_1949 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TherJR_1949 PF00175 Oxidoreductase NAD-binding domain TherJR_1957 PF01066 CDP-alcohol phosphatidyltransferase TherJR_1958 PF02666 Phosphatidylserine decarboxylase TherJR_1959 PF00929 Exonuclease TherJR_1959 PF04851 Type III restriction enzyme, res subunit TherJR_1959 PF13307 Helicase C-terminal domain TherJR_1960 PF01894 Uncharacterised protein family UPF0047 TherJR_1962 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_1964 PF01066 CDP-alcohol phosphatidyltransferase TherJR_1965 PF03819 MazG nucleotide pyrophosphohydrolase domain TherJR_1970 PF13545 Crp-like helix-turn-helix domain TherJR_1970 PF00027 Cyclic nucleotide-binding domain TherJR_1974 PF00589 Phage integrase family TherJR_1976 PF04445 Putative SAM-dependent methyltransferase TherJR_1977 PF00069 Protein kinase domain TherJR_1977 PF03793 PASTA domain TherJR_1985 PF05191 Adenylate kinase, active site lid TherJR_1986 PF00301 Rubredoxin TherJR_1986 PF01613 Flavin reductase like domain TherJR_1989 PF00149 Calcineurin-like phosphoesterase TherJR_1989 PF12320 Type 5 capsule protein repressor C-terminal domain TherJR_1990 PF04293 SpoVR like protein TherJR_1991 PF04285 Protein of unknown function (DUF444) TherJR_1992 PF08298 PrkA AAA domain TherJR_1992 PF06798 PrkA serine protein kinase C-terminal domain TherJR_1999 PF00872 Transposase, Mutator family TherJR_2010 PF01966 HD domain TherJR_2010 PF01336 OB-fold nucleic acid binding domain TherJR_2014 PF09827 CRISPR associated protein Cas2 TherJR_2015 PF01867 CRISPR associated protein Cas1 TherJR_2016 PF09659 CRISPR-associated protein (Cas_Csm6) TherJR_2018 PF03787 RAMP superfamily TherJR_2019 PF17953 CRISPR Csm4 C-terminal domain TherJR_2020 PF03787 RAMP superfamily TherJR_2021 PF03750 Csm2 Type III-A TherJR_2022 PF18211 Csm1 subunit domain B TherJR_2023 PF17284 Spermidine synthase tetramerisation domain TherJR_2024 PF00158 Sigma-54 interaction domain TherJR_2024 PF00989 PAS fold TherJR_2024 PF02954 Bacterial regulatory protein, Fis family TherJR_2026 PF01078 Magnesium chelatase, subunit ChlI TherJR_2026 PF13335 Magnesium chelatase, subunit ChlI C-terminal TherJR_2027 PF02021 Uncharacterised protein family UPF0102 TherJR_2028 PF00361 Proton-conducting membrane transporter TherJR_2029 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TherJR_2029 PF00361 Proton-conducting membrane transporter TherJR_2030 PF00361 Proton-conducting membrane transporter TherJR_2030 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus TherJR_2030 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TherJR_2031 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TherJR_2032 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TherJR_2033 PF12838 4Fe-4S dicluster domain TherJR_2034 PF00146 NADH dehydrogenase TherJR_2035 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TherJR_2036 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TherJR_2037 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_2038 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TherJR_2039 PF01966 HD domain TherJR_2039 PF11871 Domain of unknown function (DUF3391) TherJR_2040 PF01351 Ribonuclease HII TherJR_2041 PF01926 50S ribosome-binding GTPase TherJR_2042 PF10502 Signal peptidase, peptidase S26 TherJR_2043 PF01245 Ribosomal protein L19 TherJR_2045 PF09936 SAM-dependent RNA methyltransferase TherJR_2046 PF01746 tRNA (Guanine-1)-methyltransferase TherJR_2047 PF05239 PRC-barrel domain TherJR_2047 PF01782 RimM N-terminal domain TherJR_2050 PF00886 Ribosomal protein S16 TherJR_2051 PF02978 Signal peptide binding domain TherJR_2051 PF00448 SRP54-type protein, GTPase domain TherJR_2051 PF02881 SRP54-type protein, helical bundle domain TherJR_2052 PF04297 Putative helix-turn-helix protein, YlxM / p13 like TherJR_2054 PF01384 Phosphate transporter family TherJR_2056 PF01979 Amidohydrolase family TherJR_2058 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TherJR_2058 PF05221 S-adenosyl-L-homocysteine hydrolase TherJR_2059 PF01008 Initiation factor 2 subunit family TherJR_2060 PF01048 Phosphorylase superfamily TherJR_2061 PF00448 SRP54-type protein, GTPase domain TherJR_2061 PF02881 SRP54-type protein, helical bundle domain TherJR_2063 PF02463 RecF/RecN/SMC N terminal domain TherJR_2063 PF06470 SMC proteins Flexible Hinge Domain TherJR_2064 PF00990 Diguanylate cyclase, GGDEF domain TherJR_2065 PF02277 Phosphoribosyltransferase TherJR_2068 PF01209 ubiE/COQ5 methyltransferase family TherJR_2070 PF14622 Ribonuclease-III-like TherJR_2070 PF00035 Double-stranded RNA binding motif TherJR_2071 PF02801 Beta-ketoacyl synthase, C-terminal domain TherJR_2071 PF00109 Beta-ketoacyl synthase, N-terminal domain TherJR_2072 PF03060 Nitronate monooxygenase TherJR_2073 PF00550 Phosphopantetheine attachment site TherJR_2075 PF00698 Acyl transferase domain TherJR_2076 PF03060 Nitronate monooxygenase TherJR_2077 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TherJR_2077 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TherJR_2078 PF02504 Fatty acid synthesis protein TherJR_2080 PF01783 Ribosomal L32p protein family TherJR_2081 PF02620 Large ribosomal RNA subunit accumulation protein YceD TherJR_2082 PF01515 Phosphate acetyl/butaryl transferase TherJR_2084 PF07670 Nucleoside recognition TherJR_2086 PF01467 Cytidylyltransferase-like TherJR_2090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TherJR_2090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TherJR_2090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TherJR_2092 PF06965 Na+/H+ antiporter 1 TherJR_2093 PF03418 Germination protease TherJR_2094 PF00269 Small, acid-soluble spore proteins, alpha/beta type TherJR_2095 PF02906 Iron only hydrogenase large subunit, C-terminal domain TherJR_2095 PF02256 Iron hydrogenase small subunit TherJR_2095 PF00037 4Fe-4S binding domain TherJR_2095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TherJR_2099 PF17191 RecG wedge domain TherJR_2099 PF00270 DEAD/DEAH box helicase TherJR_2099 PF00271 Helicase conserved C-terminal domain TherJR_2100 PF02645 Uncharacterised protein, DegV family COG1307 TherJR_2101 PF13684 Dihydroxyacetone kinase family TherJR_2101 PF02734 DAK2 domain TherJR_2102 PF03780 Asp23 family, cell envelope-related function TherJR_2104 PF00830 Ribosomal L28 family TherJR_2105 PF01430 Hsp33 protein TherJR_2106 PF12850 Calcineurin-like phosphoesterase superfamily domain TherJR_2108 PF00534 Glycosyl transferases group 1 TherJR_2108 PF13439 Glycosyltransferase Family 4 TherJR_2109 PF03734 L,D-transpeptidase catalytic domain TherJR_2109 PF01476 LysM domain TherJR_2111 PF08668 HDOD domain TherJR_2112 PF11849 Domain of unknown function (DUF3369) TherJR_2113 PF00288 GHMP kinases N terminal domain TherJR_2113 PF08544 GHMP kinases C terminal TherJR_2114 PF03447 Homoserine dehydrogenase, NAD binding domain TherJR_2114 PF00742 Homoserine dehydrogenase TherJR_2114 PF01842 ACT domain TherJR_2120 PF17774 Putative RNA-binding domain in YlmH TherJR_2120 PF01479 S4 domain TherJR_2121 PF02325 YGGT family TherJR_2122 PF14748 Pyrroline-5-carboxylate reductase dimerisation TherJR_2122 PF03807 NADP oxidoreductase coenzyme F420-dependent TherJR_2123 PF04472 Cell division protein SepF TherJR_2124 PF01168 Alanine racemase, N-terminal domain TherJR_2126 PF01895 PhoU domain TherJR_2127 PF00005 ABC transporter TherJR_2128 PF00512 His Kinase A (phospho-acceptor) domain TherJR_2128 PF00989 PAS fold TherJR_2128 PF18698 Histidine kinase sensor domain TherJR_2128 PF00672 HAMP domain TherJR_2128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2129 PF00072 Response regulator receiver domain TherJR_2129 PF00486 Transcriptional regulatory protein, C terminal TherJR_2131 PF01471 Putative peptidoglycan binding domain TherJR_2131 PF07486 Cell Wall Hydrolase TherJR_2137 PF01471 Putative peptidoglycan binding domain TherJR_2137 PF07486 Cell Wall Hydrolase TherJR_2139 PF04055 Radical SAM superfamily TherJR_2141 PF03477 ATP cone domain TherJR_2141 PF13597 Anaerobic ribonucleoside-triphosphate reductase TherJR_2142 PF03477 ATP cone domain TherJR_2145 PF05239 PRC-barrel domain TherJR_2147 PF09551 Stage II sporulation protein R (spore_II_R) TherJR_2148 PF04545 Sigma-70, region 4 TherJR_2148 PF04542 Sigma-70 region 2 TherJR_2148 PF04539 Sigma-70 region 3 TherJR_2149 PF04542 Sigma-70 region 2 TherJR_2149 PF04545 Sigma-70, region 4 TherJR_2150 PF03419 Sporulation factor SpoIIGA TherJR_2152 PF12327 FtsZ family, C-terminal domain TherJR_2152 PF00091 Tubulin/FtsZ family, GTPase domain TherJR_2153 PF02491 SHS2 domain inserted in FTSA TherJR_2154 PF06947 Protein of unknown function (DUF1290) TherJR_2156 PF08478 POTRA domain, FtsQ-type TherJR_2157 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TherJR_2158 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TherJR_2158 PF01565 FAD binding domain TherJR_2159 PF02875 Mur ligase family, glutamate ligase domain TherJR_2159 PF08245 Mur ligase middle domain TherJR_2159 PF01225 Mur ligase family, catalytic domain TherJR_2160 PF03033 Glycosyltransferase family 28 N-terminal domain TherJR_2160 PF04101 Glycosyltransferase family 28 C-terminal domain TherJR_2161 PF01098 Cell cycle protein TherJR_2162 PF02875 Mur ligase family, glutamate ligase domain TherJR_2162 PF08245 Mur ligase middle domain TherJR_2163 PF00953 Glycosyl transferase family 4 TherJR_2164 PF02875 Mur ligase family, glutamate ligase domain TherJR_2164 PF08245 Mur ligase middle domain TherJR_2164 PF01225 Mur ligase family, catalytic domain TherJR_2165 PF01225 Mur ligase family, catalytic domain TherJR_2165 PF02875 Mur ligase family, glutamate ligase domain TherJR_2165 PF08245 Mur ligase middle domain TherJR_2166 PF03793 PASTA domain TherJR_2166 PF03717 Penicillin-binding Protein dimerisation domain TherJR_2166 PF00905 Penicillin binding protein transpeptidase domain TherJR_2168 PF01795 MraW methylase family TherJR_2169 PF02381 MraZ protein, putative antitoxin-like TherJR_2172 PF02811 PHP domain TherJR_2178 PF01979 Amidohydrolase family TherJR_2179 PF17746 SfsA N-terminal OB domain TherJR_2179 PF03749 Sugar fermentation stimulation protein RE domain TherJR_2183 PF00483 Nucleotidyl transferase TherJR_2184 PF13439 Glycosyltransferase Family 4 TherJR_2184 PF00534 Glycosyl transferases group 1 TherJR_2188 PF00484 Carbonic anhydrase TherJR_2189 PF00005 ABC transporter TherJR_2189 PF12704 MacB-like periplasmic core domain TherJR_2189 PF02687 FtsX-like permease family TherJR_2190 PF00005 ABC transporter TherJR_2191 PF00005 ABC transporter TherJR_2191 PF12704 MacB-like periplasmic core domain TherJR_2191 PF02687 FtsX-like permease family TherJR_2194 PF01435 Peptidase family M48 TherJR_2195 PF03965 Penicillinase repressor TherJR_2196 PF02690 Na+/Pi-cotransporter TherJR_2197 PF00672 HAMP domain TherJR_2197 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_2197 PF17202 Single cache domain 3 TherJR_2200 PF07943 Penicillin-binding protein 5, C-terminal domain TherJR_2200 PF00768 D-alanyl-D-alanine carboxypeptidase TherJR_2201 PF00395 S-layer homology domain TherJR_2201 PF00128 Alpha amylase, catalytic domain TherJR_2201 PF02903 Alpha amylase, N-terminal ig-like domain TherJR_2202 PF04055 Radical SAM superfamily TherJR_2204 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TherJR_2205 PF01520 N-acetylmuramoyl-L-alanine amidase TherJR_2205 PF08239 Bacterial SH3 domain TherJR_2206 PF03764 Elongation factor G, domain IV TherJR_2206 PF14492 Elongation Factor G, domain II TherJR_2206 PF00679 Elongation factor G C-terminus TherJR_2206 PF00009 Elongation factor Tu GTP binding domain TherJR_2206 PF03144 Elongation factor Tu domain 2 TherJR_2209 PF00581 Rhodanese-like domain TherJR_2210 PF02743 Cache domain TherJR_2210 PF00672 HAMP domain TherJR_2210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_2211 PF07992 Pyridine nucleotide-disulphide oxidoreductase TherJR_2216 PF04055 Radical SAM superfamily TherJR_2216 PF02310 B12 binding domain TherJR_2219 PF01578 Cytochrome C assembly protein TherJR_2225 PF04308 Ribonuclease H-like TherJR_2226 PF01053 Cys/Met metabolism PLP-dependent enzyme TherJR_2229 PF00994 Probable molybdopterin binding domain TherJR_2229 PF03453 MoeA N-terminal region (domain I and II) TherJR_2229 PF03454 MoeA C-terminal region (domain IV) TherJR_2230 PF00994 Probable molybdopterin binding domain TherJR_2230 PF02464 Competence-damaged protein TherJR_2231 PF00005 ABC transporter TherJR_2231 PF03459 TOBE domain TherJR_2232 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_2235 PF01568 Molydopterin dinucleotide binding domain TherJR_2235 PF00384 Molybdopterin oxidoreductase TherJR_2236 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TherJR_2236 PF01568 Molydopterin dinucleotide binding domain TherJR_2236 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TherJR_2236 PF12838 4Fe-4S dicluster domain TherJR_2236 PF00384 Molybdopterin oxidoreductase TherJR_2238 PF08241 Methyltransferase domain TherJR_2239 PF00403 Heavy-metal-associated domain TherJR_2241 PF00403 Heavy-metal-associated domain TherJR_2242 PF00899 ThiF family TherJR_2243 PF00291 Pyridoxal-phosphate dependent enzyme TherJR_2245 PF01206 Sulfurtransferase TusA TherJR_2246 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TherJR_2246 PF13187 4Fe-4S dicluster domain TherJR_2246 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TherJR_2247 PF01747 ATP-sulfurylase TherJR_2247 PF14306 PUA-like domain TherJR_2249 PF02910 Fumarate reductase flavoprotein C-term TherJR_2249 PF00890 FAD binding domain TherJR_2251 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2252 PF00005 ABC transporter TherJR_2253 PF09084 NMT1/THI5 like TherJR_2254 PF00294 pfkB family carbohydrate kinase TherJR_2255 PF01081 KDPG and KHG aldolase TherJR_2256 PF03328 HpcH/HpaI aldolase/citrate lyase family TherJR_2257 PF00005 ABC transporter TherJR_2257 PF17912 MalK OB fold domain TherJR_2257 PF03459 TOBE domain TherJR_2258 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TherJR_2258 PF13378 Enolase C-terminal domain-like TherJR_2259 PF02633 Creatinine amidohydrolase TherJR_2261 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2263 PF01547 Bacterial extracellular solute-binding protein TherJR_2264 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain TherJR_2264 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 TherJR_2265 PF01614 Bacterial transcriptional regulator TherJR_2265 PF09339 IclR helix-turn-helix domain TherJR_2267 PF03180 NLPA lipoprotein TherJR_2268 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2269 PF09383 NIL domain TherJR_2269 PF00005 ABC transporter TherJR_2270 PF01053 Cys/Met metabolism PLP-dependent enzyme TherJR_2272 PF01790 Prolipoprotein diacylglyceryl transferase TherJR_2276 PF01578 Cytochrome C assembly protein TherJR_2278 PF00005 ABC transporter TherJR_2282 PF01578 Cytochrome C assembly protein TherJR_2282 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TherJR_2288 PF00583 Acetyltransferase (GNAT) family TherJR_2291 PF02583 Metal-sensitive transcriptional repressor TherJR_2297 PF01784 NIF3 (NGG1p interacting factor 3) TherJR_2298 PF04816 tRNA (adenine(22)-N(1))-methyltransferase TherJR_2302 PF03979 Sigma-70 factor, region 1.1 TherJR_2302 PF00140 Sigma-70 factor, region 1.2 TherJR_2302 PF04542 Sigma-70 region 2 TherJR_2302 PF04539 Sigma-70 region 3 TherJR_2302 PF04545 Sigma-70, region 4 TherJR_2303 PF01807 CHC2 zinc finger TherJR_2303 PF10410 DnaB-helicase binding domain of primase TherJR_2303 PF08275 DNA primase catalytic core, N-terminal domain TherJR_2304 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TherJR_2305 PF01966 HD domain TherJR_2305 PF13286 Phosphohydrolase-associated domain TherJR_2307 PF02834 LigT like Phosphoesterase TherJR_2308 PF00005 ABC transporter TherJR_2311 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2312 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2313 PF12849 PBP superfamily domain TherJR_2315 PF00072 Response regulator receiver domain TherJR_2315 PF00486 Transcriptional regulatory protein, C terminal TherJR_2316 PF00571 CBS domain TherJR_2316 PF00478 IMP dehydrogenase / GMP reductase domain TherJR_2321 PF13419 Haloacid dehalogenase-like hydrolase TherJR_2323 PF00563 EAL domain TherJR_2323 PF03707 Bacterial signalling protein N terminal repeat TherJR_2323 PF13188 PAS domain TherJR_2323 PF00990 Diguanylate cyclase, GGDEF domain TherJR_2324 PF00082 Subtilase family TherJR_2325 PF00391 PEP-utilising enzyme, mobile domain TherJR_2325 PF00224 Pyruvate kinase, barrel domain TherJR_2325 PF02887 Pyruvate kinase, alpha/beta domain TherJR_2326 PF00365 Phosphofructokinase TherJR_2327 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TherJR_2328 PF01039 Carboxyl transferase domain TherJR_2328 PF17848 Acetyl-coA carboxylase zinc finger domain TherJR_2330 PF02081 Tryptophan RNA-binding attenuator protein TherJR_2331 PF14579 Helix-hairpin-helix motif TherJR_2331 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TherJR_2331 PF01336 OB-fold nucleic acid binding domain TherJR_2331 PF02811 PHP domain TherJR_2331 PF07733 Bacterial DNA polymerase III alpha NTPase domain TherJR_2333 PF08668 HDOD domain TherJR_2333 PF00563 EAL domain TherJR_2336 PF01910 Thiamine-binding protein TherJR_2338 PF01475 Ferric uptake regulator family TherJR_2339 PF13439 Glycosyltransferase Family 4 TherJR_2339 PF00534 Glycosyl transferases group 1 TherJR_2340 PF02585 GlcNAc-PI de-N-acetylase TherJR_2342 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_2342 PF05362 Lon protease (S16) C-terminal proteolytic domain TherJR_2342 PF02190 ATP-dependent protease La (LON) substrate-binding domain TherJR_2343 PF00027 Cyclic nucleotide-binding domain TherJR_2343 PF13545 Crp-like helix-turn-helix domain TherJR_2344 PF03205 Molybdopterin guanine dinucleotide synthesis protein B TherJR_2345 PF02634 FdhD/NarQ family TherJR_2347 PF01522 Polysaccharide deacetylase TherJR_2348 PF13649 Methyltransferase domain TherJR_2349 PF00365 Phosphofructokinase TherJR_2350 PF00571 CBS domain TherJR_2351 PF00588 SpoU rRNA Methylase family TherJR_2353 PF12146 Serine aminopeptidase, S33 TherJR_2355 PF00330 Aconitase family (aconitate hydratase) TherJR_2357 PF04294 VanW like protein TherJR_2362 PF08323 Starch synthase catalytic domain TherJR_2362 PF00534 Glycosyl transferases group 1 TherJR_2367 PF00534 Glycosyl transferases group 1 TherJR_2367 PF08323 Starch synthase catalytic domain TherJR_2368 PF00730 HhH-GPD superfamily base excision DNA repair protein TherJR_2368 PF00633 Helix-hairpin-helix motif TherJR_2372 PF05979 Bacterial protein of unknown function (DUF896) TherJR_2378 PF01734 Patatin-like phospholipase TherJR_2383 PF00486 Transcriptional regulatory protein, C terminal TherJR_2383 PF00072 Response regulator receiver domain TherJR_2384 PF00512 His Kinase A (phospho-acceptor) domain TherJR_2384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2386 PF01894 Uncharacterised protein family UPF0047 TherJR_2387 PF00155 Aminotransferase class I and II TherJR_2388 PF01171 PP-loop family TherJR_2392 PF12652 CotJB protein TherJR_2393 PF05067 Manganese containing catalase TherJR_2400 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TherJR_2400 PF02896 PEP-utilising enzyme, TIM barrel domain TherJR_2400 PF00391 PEP-utilising enzyme, mobile domain TherJR_2401 PF03618 Kinase/pyrophosphorylase TherJR_2402 PF00571 CBS domain TherJR_2402 PF08279 HTH domain TherJR_2403 PF02092 Glycyl-tRNA synthetase beta subunit TherJR_2403 PF05746 DALR anticodon binding domain TherJR_2404 PF02091 Glycyl-tRNA synthetase alpha subunit TherJR_2406 PF11967 Recombination protein O N terminal TherJR_2406 PF02565 Recombination protein O C terminal TherJR_2408 PF14535 AMP-binding enzyme C-terminal domain TherJR_2408 PF00501 AMP-binding enzyme TherJR_2411 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TherJR_2411 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TherJR_2412 PF02558 Ketopantoate reductase PanE/ApbA TherJR_2412 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TherJR_2413 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TherJR_2415 PF03480 Bacterial extracellular solute-binding protein, family 7 TherJR_2416 PF01212 Beta-eliminating lyase TherJR_2417 PF03448 MgtE intracellular N domain TherJR_2417 PF01769 Divalent cation transporter TherJR_2417 PF00571 CBS domain TherJR_2418 PF01926 50S ribosome-binding GTPase TherJR_2418 PF07650 KH domain TherJR_2419 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TherJR_2420 PF17479 Protein of unknown function (DUF3048) C-terminal domain TherJR_2420 PF11258 Protein of unknown function (DUF3048) N-terminal domain TherJR_2421 PF02130 Uncharacterized protein family UPF0054 TherJR_2422 PF07697 7TM-HD extracellular TherJR_2422 PF07698 7TM receptor with intracellular HD hydrolase TherJR_2422 PF01966 HD domain TherJR_2423 PF02562 PhoH-like protein TherJR_2425 PF07873 YabP family TherJR_2427 PF12127 SigmaW regulon antibacterial TherJR_2428 PF01972 Serine dehydrogenase proteinase TherJR_2428 PF01957 NfeD-like C-terminal, partner-binding TherJR_2430 PF04011 LemA family TherJR_2440 PF00437 Type II/IV secretion system protein TherJR_2442 PF00486 Transcriptional regulatory protein, C terminal TherJR_2442 PF00072 Response regulator receiver domain TherJR_2444 PF01165 Ribosomal protein S21 TherJR_2445 PF01230 HIT domain TherJR_2446 PF04055 Radical SAM superfamily TherJR_2446 PF00919 Uncharacterized protein family UPF0004 TherJR_2446 PF01938 TRAM domain TherJR_2447 PF04452 RNA methyltransferase TherJR_2450 PF00012 Hsp70 protein TherJR_2452 PF00118 TCP-1/cpn60 chaperonin family TherJR_2453 PF01628 HrcA protein C terminal domain TherJR_2454 PF04055 Radical SAM superfamily TherJR_2454 PF06969 HemN C-terminal domain TherJR_2455 PF06421 GTP-binding protein LepA C-terminus TherJR_2455 PF00009 Elongation factor Tu GTP binding domain TherJR_2455 PF00679 Elongation factor G C-terminus TherJR_2455 PF03144 Elongation factor Tu domain 2 TherJR_2457 PF03023 Lipid II flippase MurJ TherJR_2461 PF01649 Ribosomal protein S20 TherJR_2462 PF06144 DNA polymerase III, delta subunit TherJR_2463 PF03772 Competence protein TherJR_2463 PF00753 Metallo-beta-lactamase superfamily TherJR_2463 PF13567 Domain of unknown function (DUF4131) TherJR_2464 PF10531 SLBB domain TherJR_2465 PF13520 Amino acid permease TherJR_2467 PF03734 L,D-transpeptidase catalytic domain TherJR_2468 PF00005 ABC transporter TherJR_2469 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2471 PF01568 Molydopterin dinucleotide binding domain TherJR_2471 PF00384 Molybdopterin oxidoreductase TherJR_2475 PF00313 'Cold-shock' DNA-binding domain TherJR_2482 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system TherJR_2488 PF09827 CRISPR associated protein Cas2 TherJR_2489 PF01867 CRISPR associated protein Cas1 TherJR_2491 PF18019 HD domain TherJR_2491 PF18395 Cas3 C-terminal domain TherJR_2498 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TherJR_2500 PF02954 Bacterial regulatory protein, Fis family TherJR_2500 PF13426 PAS domain TherJR_2500 PF00158 Sigma-54 interaction domain TherJR_2503 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TherJR_2503 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TherJR_2505 PF00148 Nitrogenase component 1 type Oxidoreductase TherJR_2505 PF08369 Proto-chlorophyllide reductase 57 kD subunit TherJR_2509 PF13603 Leucyl-tRNA synthetase, Domain 2 TherJR_2509 PF08264 Anticodon-binding domain of tRNA TherJR_2509 PF00133 tRNA synthetases class I (I, L, M and V) TherJR_2510 PF13193 AMP-binding enzyme C-terminal domain TherJR_2510 PF00501 AMP-binding enzyme TherJR_2511 PF01966 HD domain TherJR_2513 PF01966 HD domain TherJR_2514 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TherJR_2515 PF01467 Cytidylyltransferase-like TherJR_2517 PF00171 Aldehyde dehydrogenase family TherJR_2518 PF00696 Amino acid kinase family TherJR_2518 PF01472 PUA domain TherJR_2519 PF01985 CRS1 / YhbY (CRM) domain TherJR_2521 PF01926 50S ribosome-binding GTPase TherJR_2521 PF09269 Domain of unknown function (DUF1967) TherJR_2521 PF01018 GTP1/OBG TherJR_2523 PF05504 Spore germination B3/ GerAC like, C-terminal TherJR_2525 PF03323 Bacillus/Clostridium GerA spore germination protein TherJR_2526 PF03323 Bacillus/Clostridium GerA spore germination protein TherJR_2527 PF03845 Spore germination protein TherJR_2528 PF05504 Spore germination B3/ GerAC like, C-terminal TherJR_2529 PF01016 Ribosomal L27 protein TherJR_2531 PF00829 Ribosomal prokaryotic L21 protein TherJR_2534 PF10150 Ribonuclease E/G family TherJR_2534 PF00575 S1 RNA binding domain TherJR_2537 PF02163 Peptidase family M50 TherJR_2539 PF01098 Cell cycle protein TherJR_2540 PF03776 Septum formation topological specificity factor MinE TherJR_2541 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TherJR_2542 PF03775 Septum formation inhibitor MinC, C-terminal domain TherJR_2543 PF03717 Penicillin-binding Protein dimerisation domain TherJR_2543 PF00905 Penicillin binding protein transpeptidase domain TherJR_2545 PF04085 rod shape-determining protein MreC TherJR_2547 PF04002 RadC-like JAB domain TherJR_2548 PF02545 Maf-like protein TherJR_2551 PF00037 4Fe-4S binding domain TherJR_2551 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TherJR_2551 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TherJR_2553 PF02629 CoA binding domain TherJR_2553 PF06971 Putative DNA-binding protein N-terminus TherJR_2555 PF02875 Mur ligase family, glutamate ligase domain TherJR_2555 PF08245 Mur ligase middle domain TherJR_2557 PF10458 Valyl tRNA synthetase tRNA binding arm TherJR_2557 PF08264 Anticodon-binding domain of tRNA TherJR_2557 PF00133 tRNA synthetases class I (I, L, M and V) TherJR_2559 PF01926 50S ribosome-binding GTPase TherJR_2560 PF05362 Lon protease (S16) C-terminal proteolytic domain TherJR_2560 PF02190 ATP-dependent protease La (LON) substrate-binding domain TherJR_2560 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_2561 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_2561 PF05362 Lon protease (S16) C-terminal proteolytic domain TherJR_2562 PF07724 AAA domain (Cdc48 subfamily) TherJR_2562 PF10431 C-terminal, D2-small domain, of ClpB protein TherJR_2562 PF06689 ClpX C4-type zinc finger TherJR_2563 PF00574 Clp protease TherJR_2564 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TherJR_2564 PF05698 Bacterial trigger factor protein (TF) C-terminus TherJR_2564 PF05697 Bacterial trigger factor protein (TF) TherJR_2566 PF01725 Ham1 family TherJR_2567 PF03725 3' exoribonuclease family, domain 2 TherJR_2567 PF01138 3' exoribonuclease family, domain 1 TherJR_2568 PF12706 Beta-lactamase superfamily domain TherJR_2569 PF01869 BadF/BadG/BcrA/BcrD ATPase family TherJR_2571 PF00392 Bacterial regulatory proteins, gntR family TherJR_2571 PF00155 Aminotransferase class I and II TherJR_2572 PF04122 Putative cell wall binding repeat 2 TherJR_2572 PF01520 N-acetylmuramoyl-L-alanine amidase TherJR_2574 PF11412 Disulphide bond corrector protein DsbC TherJR_2574 PF02683 Cytochrome C biogenesis protein transmembrane region TherJR_2582 PF00395 S-layer homology domain TherJR_2587 PF00528 Binding-protein-dependent transport system inner membrane component TherJR_2588 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) TherJR_2591 PF06133 Control of competence regulator ComK, YlbF/YmcA TherJR_2593 PF02811 PHP domain TherJR_2594 PF03698 Uncharacterised protein family (UPF0180) TherJR_2601 PF00753 Metallo-beta-lactamase superfamily TherJR_2603 PF16199 Radical_SAM C-terminal domain TherJR_2603 PF04055 Radical SAM superfamily TherJR_2604 PF00176 SNF2 family N-terminal domain TherJR_2604 PF00271 Helicase conserved C-terminal domain TherJR_2607 PF03649 Uncharacterised protein family (UPF0014) TherJR_2608 PF00005 ABC transporter TherJR_2610 PF00285 Citrate synthase, C-terminal domain TherJR_2611 PF02311 AraC-like ligand binding domain TherJR_2611 PF12833 Helix-turn-helix domain TherJR_2612 PF07690 Major Facilitator Superfamily TherJR_2614 PF00970 Oxidoreductase FAD-binding domain TherJR_2614 PF00111 2Fe-2S iron-sulfur cluster binding domain TherJR_2614 PF00175 Oxidoreductase NAD-binding domain TherJR_2619 PF02607 B12 binding domain TherJR_2619 PF02310 B12 binding domain TherJR_2622 PF07702 UTRA domain TherJR_2622 PF00392 Bacterial regulatory proteins, gntR family TherJR_2623 PF02607 B12 binding domain TherJR_2623 PF02310 B12 binding domain TherJR_2625 PF07690 Major Facilitator Superfamily TherJR_2628 PF02310 B12 binding domain TherJR_2628 PF02607 B12 binding domain TherJR_2630 PF02743 Cache domain TherJR_2630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TherJR_2630 PF00672 HAMP domain TherJR_2632 PF00005 ABC transporter TherJR_2632 PF02687 FtsX-like permease family TherJR_2632 PF12704 MacB-like periplasmic core domain TherJR_2633 PF02687 FtsX-like permease family TherJR_2633 PF12704 MacB-like periplasmic core domain TherJR_2633 PF00005 ABC transporter TherJR_2634 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TherJR_2636 PF00005 ABC transporter TherJR_2638 PF00072 Response regulator receiver domain TherJR_2638 PF00486 Transcriptional regulatory protein, C terminal TherJR_2639 PF16736 Single Cache-like TherJR_2639 PF00989 PAS fold TherJR_2639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2639 PF00512 His Kinase A (phospho-acceptor) domain TherJR_2640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2640 PF00989 PAS fold TherJR_2640 PF00512 His Kinase A (phospho-acceptor) domain TherJR_2640 PF18698 Histidine kinase sensor domain TherJR_2640 PF00672 HAMP domain TherJR_2641 PF00072 Response regulator receiver domain TherJR_2641 PF00486 Transcriptional regulatory protein, C terminal TherJR_2646 PF01638 HxlR-like helix-turn-helix TherJR_2648 PF00881 Nitroreductase family TherJR_2650 PF04143 Sulphur transport TherJR_2660 PF03707 Bacterial signalling protein N terminal repeat TherJR_2660 PF00990 Diguanylate cyclase, GGDEF domain TherJR_2660 PF00563 EAL domain TherJR_2661 PF02219 Methylenetetrahydrofolate reductase TherJR_2663 PF01566 Natural resistance-associated macrophage protein TherJR_2665 PF00005 ABC transporter TherJR_2666 PF12399 Branched-chain amino acid ATP-binding cassette transporter TherJR_2666 PF00005 ABC transporter TherJR_2667 PF02653 Branched-chain amino acid transport system / permease component TherJR_2667 PF11862 Domain of unknown function (DUF3382) TherJR_2668 PF02653 Branched-chain amino acid transport system / permease component TherJR_2669 PF13458 Periplasmic binding protein TherJR_2670 PF01791 DeoC/LacD family aldolase TherJR_2671 PF00483 Nucleotidyl transferase TherJR_2672 PF00534 Glycosyl transferases group 1 TherJR_2674 PF00982 Glycosyltransferase family 20 TherJR_2677 PF13411 MerR HTH family regulatory protein TherJR_2680 PF02457 DisA bacterial checkpoint controller nucleotide-binding TherJR_2680 PF10372 Bacterial membrane-spanning protein N-terminus TherJR_2681 PF07690 Major Facilitator Superfamily TherJR_2683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2683 PF18719 ArlS sensor domain TherJR_2683 PF00512 His Kinase A (phospho-acceptor) domain TherJR_2684 PF00486 Transcriptional regulatory protein, C terminal TherJR_2684 PF00072 Response regulator receiver domain TherJR_2686 PF00005 ABC transporter TherJR_2686 PF08402 TOBE domain TherJR_2687 PF02653 Branched-chain amino acid transport system / permease component TherJR_2690 PF01668 SmpB protein TherJR_2691 PF00501 AMP-binding enzyme TherJR_2691 PF13193 AMP-binding enzyme C-terminal domain TherJR_2693 PF00575 S1 RNA binding domain TherJR_2693 PF17876 Cold shock domain TherJR_2693 PF08206 Ribonuclease B OB domain TherJR_2693 PF00773 RNB domain TherJR_2695 PF00501 AMP-binding enzyme TherJR_2695 PF13193 AMP-binding enzyme C-terminal domain TherJR_2696 PF00501 AMP-binding enzyme TherJR_2696 PF13193 AMP-binding enzyme C-terminal domain TherJR_2697 PF03840 Preprotein translocase SecG subunit TherJR_2700 PF00005 ABC transporter TherJR_2701 PF00392 Bacterial regulatory proteins, gntR family TherJR_2703 PF00005 ABC transporter TherJR_2704 PF00392 Bacterial regulatory proteins, gntR family TherJR_2706 PF03030 Inorganic H+ pyrophosphatase TherJR_2707 PF00113 Enolase, C-terminal TIM barrel domain TherJR_2707 PF03952 Enolase, N-terminal domain TherJR_2708 PF01676 Metalloenzyme superfamily TherJR_2708 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TherJR_2709 PF00121 Triosephosphate isomerase TherJR_2710 PF00162 Phosphoglycerate kinase TherJR_2711 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TherJR_2711 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TherJR_2712 PF04198 Putative sugar-binding domain TherJR_2713 PF04552 Sigma-54, DNA binding domain TherJR_2713 PF00309 Sigma-54 factor, Activator interacting domain (AID) TherJR_2713 PF04963 Sigma-54 factor, core binding domain TherJR_2715 PF10298 WhiA N-terminal LAGLIDADG-like domain TherJR_2715 PF14527 WhiA LAGLIDADG-like domain TherJR_2715 PF02650 WhiA C-terminal HTH domain TherJR_2718 PF01933 Uncharacterised protein family UPF0052 TherJR_2719 PF03668 P-loop ATPase protein family TherJR_2721 PF00480 ROK family TherJR_2722 PF02811 PHP domain TherJR_2723 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain TherJR_2723 PF01380 SIS domain TherJR_2728 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV TherJR_2729 PF01169 Uncharacterized protein family UPF0016 TherJR_2730 PF07085 DRTGG domain TherJR_2730 PF01368 DHH family TherJR_2730 PF02833 DHHA2 domain TherJR_2730 PF00571 CBS domain TherJR_2731 PF02151 UvrB/uvrC motif TherJR_2731 PF12826 Helix-hairpin-helix motif TherJR_2731 PF08459 UvrC Helix-hairpin-helix N-terminal TherJR_2731 PF01541 GIY-YIG catalytic domain TherJR_2732 PF17760 UvrA interaction domain TherJR_2732 PF17755 UvrA DNA-binding domain TherJR_2733 PF17757 UvrB interaction domain TherJR_2733 PF02151 UvrB/uvrC motif TherJR_2733 PF00271 Helicase conserved C-terminal domain TherJR_2733 PF04851 Type III restriction enzyme, res subunit TherJR_2733 PF12344 Ultra-violet resistance protein B TherJR_2735 PF03167 Uracil DNA glycosylase superfamily TherJR_2738 PF03572 Peptidase family S41 TherJR_2738 PF01471 Putative peptidoglycan binding domain TherJR_2738 PF17820 PDZ domain TherJR_2739 PF01551 Peptidase family M23 TherJR_2740 PF18075 FtsX extracellular domain TherJR_2740 PF02687 FtsX-like permease family TherJR_2741 PF00005 ABC transporter TherJR_2748 PF00082 Subtilase family TherJR_2752 PF00082 Subtilase family TherJR_2760 PF00072 Response regulator receiver domain TherJR_2760 PF04397 LytTr DNA-binding domain TherJR_2762 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain TherJR_2762 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2764 PF02780 Transketolase, C-terminal domain TherJR_2764 PF02779 Transketolase, pyrimidine binding domain TherJR_2765 PF00456 Transketolase, thiamine diphosphate binding domain TherJR_2766 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TherJR_2766 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TherJR_2769 PF00691 OmpA family TherJR_2769 PF13677 Membrane MotB of proton-channel complex MotA/MotB TherJR_2770 PF01618 MotA/TolQ/ExbB proton channel family TherJR_2771 PF07516 SecA Wing and Scaffold domain TherJR_2771 PF07517 SecA DEAD-like domain TherJR_2771 PF02810 SEC-C motif TherJR_2771 PF01043 SecA preprotein cross-linking domain TherJR_2773 PF01966 HD domain TherJR_2774 PF01966 HD domain TherJR_2776 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TherJR_2776 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TherJR_2777 PF00313 'Cold-shock' DNA-binding domain TherJR_2779 PF02561 Flagellar protein FliS TherJR_2780 PF03102 NeuB family TherJR_2780 PF08666 SAF domain TherJR_2782 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TherJR_2783 PF16363 GDP-mannose 4,6 dehydratase TherJR_2784 PF02348 Cytidylyltransferase TherJR_2785 PF00483 Nucleotidyl transferase TherJR_2786 PF02350 UDP-N-acetylglucosamine 2-epimerase TherJR_2791 PF02465 Flagellar hook-associated protein 2 N-terminus TherJR_2791 PF07195 Flagellar hook-associated protein 2 C-terminus TherJR_2792 PF03646 FlaG protein TherJR_2793 PF00700 Bacterial flagellin C-terminal helical region TherJR_2793 PF00669 Bacterial flagellin N-terminal helical region TherJR_2795 PF02623 FliW protein TherJR_2797 PF00700 Bacterial flagellin C-terminal helical region TherJR_2797 PF00669 Bacterial flagellin N-terminal helical region TherJR_2798 PF00460 Flagella basal body rod protein TherJR_2798 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TherJR_2802 PF00156 Phosphoribosyl transferase domain TherJR_2803 PF04851 Type III restriction enzyme, res subunit TherJR_2803 PF00271 Helicase conserved C-terminal domain TherJR_2804 PF00563 EAL domain TherJR_2804 PF00990 Diguanylate cyclase, GGDEF domain TherJR_2805 PF00990 Diguanylate cyclase, GGDEF domain TherJR_2805 PF00072 Response regulator receiver domain TherJR_2809 PF00437 Type II/IV secretion system protein TherJR_2810 PF00072 Response regulator receiver domain TherJR_2810 PF00196 Bacterial regulatory proteins, luxR family TherJR_2817 PF00072 Response regulator receiver domain TherJR_2817 PF00196 Bacterial regulatory proteins, luxR family TherJR_2818 PF07730 Histidine kinase TherJR_2818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2818 PF05384 Sensor protein DegS TherJR_2819 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TherJR_2819 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TherJR_2819 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TherJR_2819 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TherJR_2820 PF04239 Protein of unknown function (DUF421) TherJR_2821 PF00953 Glycosyl transferase family 4 TherJR_2822 PF07977 FabA-like domain TherJR_2823 PF03023 Lipid II flippase MurJ TherJR_2824 PF13579 Glycosyl transferase 4-like domain TherJR_2824 PF00534 Glycosyl transferases group 1 TherJR_2826 PF00395 S-layer homology domain TherJR_2826 PF03424 Carbohydrate binding domain (family 17/28) TherJR_2826 PF00150 Cellulase (glycosyl hydrolase family 5) TherJR_2827 PF03808 Glycosyl transferase WecB/TagA/CpsF family TherJR_2828 PF03816 Cell envelope-related transcriptional attenuator domain TherJR_2830 PF01050 Mannose-6-phosphate isomerase TherJR_2830 PF00483 Nucleotidyl transferase TherJR_2833 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TherJR_2835 PF16363 GDP-mannose 4,6 dehydratase TherJR_2839 PF01040 UbiA prenyltransferase family TherJR_2840 PF02397 Bacterial sugar transferase TherJR_2842 PF13439 Glycosyltransferase Family 4 TherJR_2842 PF00534 Glycosyl transferases group 1 TherJR_2843 PF00534 Glycosyl transferases group 1 TherJR_2843 PF13439 Glycosyltransferase Family 4 TherJR_2846 PF00535 Glycosyl transferase family 2 TherJR_2848 PF05175 Methyltransferase small domain TherJR_2848 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus TherJR_2850 PF00884 Sulfatase TherJR_2851 PF00483 Nucleotidyl transferase TherJR_2854 PF00005 ABC transporter TherJR_2854 PF12399 Branched-chain amino acid ATP-binding cassette transporter TherJR_2855 PF00919 Uncharacterized protein family UPF0004 TherJR_2855 PF01938 TRAM domain TherJR_2855 PF04055 Radical SAM superfamily TherJR_2857 PF04055 Radical SAM superfamily TherJR_2857 PF02310 B12 binding domain TherJR_2859 PF00128 Alpha amylase, catalytic domain TherJR_2859 PF02903 Alpha amylase, N-terminal ig-like domain TherJR_2859 PF00395 S-layer homology domain TherJR_2861 PF01578 Cytochrome C assembly protein TherJR_2863 PF00041 Fibronectin type III domain TherJR_2863 PF02011 Glycosyl hydrolase family 48 TherJR_2863 PF00553 Cellulose binding domain TherJR_2869 PF00149 Calcineurin-like phosphoesterase TherJR_2871 PF00395 S-layer homology domain TherJR_2876 PF03816 Cell envelope-related transcriptional attenuator domain TherJR_2877 PF00395 S-layer homology domain TherJR_2877 PF02903 Alpha amylase, N-terminal ig-like domain TherJR_2877 PF00128 Alpha amylase, catalytic domain TherJR_2881 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TherJR_2881 PF00460 Flagella basal body rod protein TherJR_2882 PF00460 Flagella basal body rod protein TherJR_2882 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TherJR_2884 PF12116 Stage III sporulation protein D TherJR_2885 PF08486 Stage II sporulation protein TherJR_2886 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TherJR_2886 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TherJR_2887 PF02874 ATP synthase alpha/beta family, beta-barrel domain TherJR_2887 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TherJR_2888 PF00231 ATP synthase TherJR_2889 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TherJR_2889 PF00306 ATP synthase alpha/beta chain, C terminal domain TherJR_2889 PF02874 ATP synthase alpha/beta family, beta-barrel domain TherJR_2890 PF00213 ATP synthase delta (OSCP) subunit TherJR_2891 PF00430 ATP synthase B/B' CF(0) TherJR_2892 PF00137 ATP synthase subunit C TherJR_2893 PF00119 ATP synthase A chain TherJR_2896 PF02350 UDP-N-acetylglucosamine 2-epimerase TherJR_2897 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TherJR_2898 PF00464 Serine hydroxymethyltransferase TherJR_2899 PF02502 Ribose/Galactose Isomerase TherJR_2900 PF01451 Low molecular weight phosphotyrosine protein phosphatase TherJR_2901 PF02659 Putative manganese efflux pump TherJR_2902 PF03481 Putative GTP-binding controlling metal-binding TherJR_2902 PF01300 Telomere recombination TherJR_2903 PF00999 Sodium/hydrogen exchanger family TherJR_2904 PF05175 Methyltransferase small domain TherJR_2904 PF17827 PrmC N-terminal domain TherJR_2905 PF03462 PCRF domain TherJR_2905 PF00472 RF-1 domain TherJR_2906 PF07136 Protein of unknown function (DUF1385) TherJR_2907 PF01197 Ribosomal protein L31 TherJR_2909 PF01476 LysM domain TherJR_2909 PF08525 Opacity-associated protein A N-terminal motif TherJR_2909 PF01551 Peptidase family M23 TherJR_2912 PF07498 Rho termination factor, N-terminal domain TherJR_2912 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TherJR_2912 PF07497 Rho termination factor, RNA-binding domain TherJR_2914 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TherJR_2915 PF00923 Transaldolase/Fructose-6-phosphate aldolase TherJR_2917 PF01116 Fructose-bisphosphate aldolase class-II TherJR_2919 PF00072 Response regulator receiver domain TherJR_2921 PF01343 Peptidase family S49 TherJR_2922 PF00117 Glutamine amidotransferase class-I TherJR_2922 PF06418 CTP synthase N-terminus TherJR_2923 PF05066 HB1, ASXL, restriction endonuclease HTH domain TherJR_2924 PF05746 DALR anticodon binding domain TherJR_2924 PF03485 Arginyl tRNA synthetase N terminal domain TherJR_2924 PF00750 tRNA synthetases class I (R) TherJR_2929 PF00474 Sodium:solute symporter family TherJR_2930 PF00155 Aminotransferase class I and II TherJR_2931 PF01037 Lrp/AsnC ligand binding domain TherJR_2933 PF03109 ABC1 family TherJR_2934 PF00403 Heavy-metal-associated domain TherJR_2935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TherJR_2935 PF00512 His Kinase A (phospho-acceptor) domain TherJR_2935 PF00989 PAS fold TherJR_2936 PF00905 Penicillin binding protein transpeptidase domain TherJR_2936 PF00912 Transglycosylase TherJR_2937 PF14620 YpeB sporulation TherJR_2937 PF03413 Peptidase propeptide and YPEB domain TherJR_2938 PF01471 Putative peptidoglycan binding domain TherJR_2938 PF07486 Cell Wall Hydrolase TherJR_2939 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TherJR_2939 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TherJR_2939 PF01488 Shikimate / quinate 5-dehydrogenase TherJR_2940 PF03063 Prismane/CO dehydrogenase family TherJR_2944 PF02310 B12 binding domain TherJR_2944 PF02607 B12 binding domain TherJR_2945 PF06253 Trimethylamine methyltransferase (MTTB) TherJR_2946 PF02028 BCCT, betaine/carnitine/choline family transporter TherJR_2947 PF02007 Tetrahydromethanopterin S-methyltransferase MtrH subunit TherJR_2948 PF02028 BCCT, betaine/carnitine/choline family transporter TherJR_2950 PF02310 B12 binding domain TherJR_2950 PF02607 B12 binding domain TherJR_2951 PF02311 AraC-like ligand binding domain TherJR_2951 PF12833 Helix-turn-helix domain TherJR_2957 PF01924 Hydrogenase formation hypA family TherJR_2958 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TherJR_2959 PF03063 Prismane/CO dehydrogenase family TherJR_2960 PF13247 4Fe-4S dicluster domain TherJR_2961 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TherJR_2962 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TherJR_2962 PF00374 Nickel-dependent hydrogenase TherJR_2965 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_2966 PF00146 NADH dehydrogenase TherJR_2967 PF00361 Proton-conducting membrane transporter TherJR_2968 PF00027 Cyclic nucleotide-binding domain TherJR_2968 PF13545 Crp-like helix-turn-helix domain TherJR_2969 PF01063 Amino-transferase class IV TherJR_2970 PF04715 Anthranilate synthase component I, N terminal region TherJR_2970 PF00425 chorismate binding enzyme TherJR_2971 PF00709 Adenylosuccinate synthetase TherJR_2972 PF03796 DnaB-like helicase C terminal domain TherJR_2972 PF00772 DnaB-like helicase N terminal domain TherJR_2973 PF05362 Lon protease (S16) C-terminal proteolytic domain TherJR_2973 PF00004 ATPase family associated with various cellular activities (AAA) TherJR_2974 PF03948 Ribosomal protein L9, C-terminal domain TherJR_2974 PF01281 Ribosomal protein L9, N-terminal domain TherJR_2977 PF01084 Ribosomal protein S18 TherJR_2978 PF00436 Single-strand binding protein family TherJR_2979 PF01250 Ribosomal protein S6 TherJR_2980 PF06071 Protein of unknown function (DUF933) TherJR_2980 PF01926 50S ribosome-binding GTPase TherJR_2982 PF00924 Mechanosensitive ion channel TherJR_2984 PF02127 Aminopeptidase I zinc metalloprotease (M18) TherJR_2986 PF02492 CobW/HypB/UreG, nucleotide-binding domain TherJR_2987 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TherJR_2988 PF01292 Prokaryotic cytochrome b561 TherJR_2989 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_2989 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TherJR_2991 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal TherJR_2991 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TherJR_2992 PF02954 Bacterial regulatory protein, Fis family TherJR_2992 PF00072 Response regulator receiver domain TherJR_2992 PF00158 Sigma-54 interaction domain TherJR_2993 PF06866 Protein of unknown function (DUF1256) TherJR_2996 PF00156 Phosphoribosyl transferase domain TherJR_2996 PF05139 Erythromycin esterase TherJR_2999 PF02540 NAD synthase TherJR_3000 PF00731 AIR carboxylase TherJR_3001 PF01969 Protein of unknown function DUF111 TherJR_3003 PF00266 Aminotransferase class-V TherJR_3004 PF01926 50S ribosome-binding GTPase TherJR_3004 PF12631 MnmE helical domain TherJR_3004 PF10396 GTP-binding protein TrmE N-terminus TherJR_3005 PF04055 Radical SAM superfamily TherJR_3005 PF06968 Biotin and Thiamin Synthesis associated domain TherJR_3006 PF06968 Biotin and Thiamin Synthesis associated domain TherJR_3006 PF04055 Radical SAM superfamily TherJR_3008 PF02195 ParB-like nuclease domain TherJR_3008 PF17762 HTH domain found in ParB protein TherJR_3009 PF13614 AAA domain TherJR_3010 PF02527 rRNA small subunit methyltransferase G TherJR_3011 PF01134 Glucose inhibited division protein A TherJR_3011 PF13932 GidA associated domain TherJR_3012 PF10396 GTP-binding protein TrmE N-terminus TherJR_3012 PF12631 MnmE helical domain TherJR_3012 PF01926 50S ribosome-binding GTPase TherJR_3013 PF14804 Jag N-terminus TherJR_3013 PF01424 R3H domain TherJR_3014 PF02096 60Kd inner membrane protein TherJR_3014 PF14849 YidC periplasmic domain TherJR_3015 PF01809 Putative membrane protein insertion efficiency factor TherJR_3016 PF00825 Ribonuclease P TherJR_3017 PF00468 Ribosomal protein L34