locus-tag class description Thebr_0001 PF11638 DnaA N-terminal domain Thebr_0001 PF00308 Bacterial dnaA protein Thebr_0001 PF08299 Bacterial dnaA protein helix-turn-helix Thebr_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Thebr_0002 PF02767 DNA polymerase III beta subunit, central domain Thebr_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Thebr_0004 PF02463 RecF/RecN/SMC N terminal domain Thebr_0006 PF16338 Domain of unknown function (DUF4968) Thebr_0006 PF17137 Domain of unknown function (DUF5110) Thebr_0006 PF13802 Galactose mutarotase-like Thebr_0006 PF01055 Glycosyl hydrolases family 31 Thebr_0007 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thebr_0008 PF08245 Mur ligase middle domain Thebr_0008 PF08353 Domain of unknown function (DUF1727) Thebr_0010 PF01751 Toprim domain Thebr_0010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0010 PF00986 DNA gyrase B subunit, carboxyl terminus Thebr_0010 PF00204 DNA gyrase B Thebr_0011 PF03989 DNA gyrase C-terminal domain, beta-propeller Thebr_0011 PF00521 DNA gyrase/topoisomerase IV, subunit A Thebr_0012 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thebr_0013 PF10369 Small subunit of acetolactate synthase Thebr_0014 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thebr_0014 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thebr_0015 PF00682 HMGL-like Thebr_0016 PF00330 Aconitase family (aconitate hydratase) Thebr_0017 PF00694 Aconitase C-terminal domain Thebr_0018 PF00180 Isocitrate/isopropylmalate dehydrogenase Thebr_0019 PF00920 Dehydratase family Thebr_0020 PF00205 Thiamine pyrophosphate enzyme, central domain Thebr_0020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thebr_0020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thebr_0021 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thebr_0021 PF01872 RibD C-terminal domain Thebr_0022 PF00677 Lumazine binding domain Thebr_0023 PF00925 GTP cyclohydrolase II Thebr_0023 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thebr_0024 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thebr_0025 PF01594 AI-2E family transporter Thebr_0028 PF10502 Signal peptidase, peptidase S26 Thebr_0029 PF02403 Seryl-tRNA synthetase N-terminal domain Thebr_0029 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thebr_0030 PF00589 Phage integrase family Thebr_0030 PF14659 Phage integrase, N-terminal SAM-like domain Thebr_0033 PF01381 Helix-turn-helix Thebr_0043 PF01966 HD domain Thebr_0052 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0060 PF02796 Helix-turn-helix domain of resolvase Thebr_0060 PF00665 Integrase core domain Thebr_0064 PF01551 Peptidase family M23 Thebr_0064 PF08525 Opacity-associated protein A N-terminal motif Thebr_0064 PF01476 LysM domain Thebr_0068 PF00437 Type II/IV secretion system protein Thebr_0079 PF01471 Putative peptidoglycan binding domain Thebr_0079 PF07486 Cell Wall Hydrolase Thebr_0081 PF00072 Response regulator receiver domain Thebr_0094 PF01807 CHC2 zinc finger Thebr_0094 PF10410 DnaB-helicase binding domain of primase Thebr_0094 PF08278 DNA primase DnaG DnaB-binding Thebr_0094 PF08275 DNA primase catalytic core, N-terminal domain Thebr_0100 PF14659 Phage integrase, N-terminal SAM-like domain Thebr_0100 PF00589 Phage integrase family Thebr_0102 PF00753 Metallo-beta-lactamase superfamily Thebr_0102 PF13567 Domain of unknown function (DUF4131) Thebr_0102 PF03772 Competence protein Thebr_0104 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0105 PF01433 Peptidase family M1 domain Thebr_0105 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Thebr_0105 PF11940 Domain of unknown function (DUF3458) Ig-like fold Thebr_0106 PF00308 Bacterial dnaA protein Thebr_0106 PF08299 Bacterial dnaA protein helix-turn-helix Thebr_0108 PF01476 LysM domain Thebr_0108 PF08525 Opacity-associated protein A N-terminal motif Thebr_0108 PF01551 Peptidase family M23 Thebr_0110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thebr_0111 PF13180 PDZ domain Thebr_0113 PF02590 Predicted SPOUT methyltransferase Thebr_0114 PF02590 Predicted SPOUT methyltransferase Thebr_0115 PF01479 S4 domain Thebr_0115 PF00579 tRNA synthetases class I (W and Y) Thebr_0117 PF01048 Phosphorylase superfamily Thebr_0120 PF00462 Glutaredoxin Thebr_0121 PF00166 Chaperonin 10 Kd subunit Thebr_0122 PF00005 ABC transporter Thebr_0123 PF01458 Uncharacterized protein family (UPF0051) Thebr_0125 PF00266 Aminotransferase class-V Thebr_0126 PF01592 NifU-like N terminal domain Thebr_0131 PF18019 HD domain Thebr_0131 PF00270 DEAD/DEAH box helicase Thebr_0131 PF18395 Cas3 C-terminal domain Thebr_0138 PF03575 Peptidase family S51 Thebr_0140 PF01867 CRISPR associated protein Cas1 Thebr_0141 PF09827 CRISPR associated protein Cas2 Thebr_0142 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0142 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thebr_0143 PF00753 Metallo-beta-lactamase superfamily Thebr_0144 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0146 PF00742 Homoserine dehydrogenase Thebr_0146 PF03447 Homoserine dehydrogenase, NAD binding domain Thebr_0146 PF01842 ACT domain Thebr_0147 PF00291 Pyridoxal-phosphate dependent enzyme Thebr_0148 PF00288 GHMP kinases N terminal domain Thebr_0148 PF08544 GHMP kinases C terminal Thebr_0149 PF06280 Fn3-like domain Thebr_0149 PF02225 PA domain Thebr_0149 PF00746 LPXTG cell wall anchor motif Thebr_0149 PF00082 Subtilase family Thebr_0150 PF00266 Aminotransferase class-V Thebr_0151 PF01842 ACT domain Thebr_0151 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_0151 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_0153 PF00117 Glutamine amidotransferase class-I Thebr_0153 PF06418 CTP synthase N-terminus Thebr_0154 PF13936 Helix-turn-helix domain Thebr_0156 PF08220 DeoR-like helix-turn-helix domain Thebr_0156 PF00455 DeoR C terminal sensor domain Thebr_0157 PF00294 pfkB family carbohydrate kinase Thebr_0158 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_0158 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_0159 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_0159 PF02378 Phosphotransferase system, EIIC Thebr_0161 PF00011 Hsp20/alpha crystallin family Thebr_0164 PF08245 Mur ligase middle domain Thebr_0164 PF01225 Mur ligase family, catalytic domain Thebr_0164 PF02875 Mur ligase family, glutamate ligase domain Thebr_0165 PF09182 Bacterial purine repressor, N-terminal Thebr_0165 PF00156 Phosphoribosyl transferase domain Thebr_0166 PF04026 SpoVG Thebr_0167 PF12804 MobA-like NTP transferase domain Thebr_0167 PF00132 Bacterial transferase hexapeptide (six repeats) Thebr_0168 PF14572 Phosphoribosyl synthetase-associated domain Thebr_0168 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thebr_0169 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0170 PF00072 Response regulator receiver domain Thebr_0170 PF00486 Transcriptional regulatory protein, C terminal Thebr_0171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0171 PF18698 Histidine kinase sensor domain Thebr_0171 PF00989 PAS fold Thebr_0171 PF00512 His Kinase A (phospho-acceptor) domain Thebr_0171 PF00672 HAMP domain Thebr_0172 PF13180 PDZ domain Thebr_0173 PF01195 Peptidyl-tRNA hydrolase Thebr_0175 PF17757 UvrB interaction domain Thebr_0175 PF03461 TRCF domain Thebr_0175 PF00271 Helicase conserved C-terminal domain Thebr_0175 PF00270 DEAD/DEAH box helicase Thebr_0175 PF02559 CarD-like/TRCF domain Thebr_0177 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thebr_0177 PF15714 Stage V sporulation protein T C-terminal, transcription factor Thebr_0178 PF05582 YabG peptidase U57 Thebr_0179 PF13936 Helix-turn-helix domain Thebr_0180 PF06257 Biofilm formation stimulator VEG Thebr_0181 PF01476 LysM domain Thebr_0182 PF00288 GHMP kinases N terminal domain Thebr_0182 PF08544 GHMP kinases C terminal Thebr_0183 PF00392 Bacterial regulatory proteins, gntR family Thebr_0183 PF07729 FCD domain Thebr_0186 PF03323 Bacillus/Clostridium GerA spore germination protein Thebr_0187 PF03845 Spore germination protein Thebr_0188 PF05504 Spore germination B3/ GerAC like, C-terminal Thebr_0189 PF09551 Stage II sporulation protein R (spore_II_R) Thebr_0190 PF01471 Putative peptidoglycan binding domain Thebr_0190 PF07486 Cell Wall Hydrolase Thebr_0191 PF14620 YpeB sporulation Thebr_0192 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thebr_0193 PF07478 D-ala D-ala ligase C-terminus Thebr_0193 PF01820 D-ala D-ala ligase N-terminus Thebr_0195 PF03485 Arginyl tRNA synthetase N terminal domain Thebr_0195 PF00750 tRNA synthetases class I (R) Thebr_0195 PF05746 DALR anticodon binding domain Thebr_0196 PF05190 MutS family domain IV Thebr_0196 PF05192 MutS domain III Thebr_0196 PF01624 MutS domain I Thebr_0196 PF00488 MutS domain V Thebr_0196 PF05188 MutS domain II Thebr_0199 PF00005 ABC transporter Thebr_0204 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_0204 PF00005 ABC transporter Thebr_0205 PF00005 ABC transporter Thebr_0205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_0207 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0208 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thebr_0210 PF00248 Aldo/keto reductase family Thebr_0212 PF00465 Iron-containing alcohol dehydrogenase Thebr_0212 PF00171 Aldehyde dehydrogenase family Thebr_0213 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Thebr_0213 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Thebr_0215 PF01047 MarR family Thebr_0216 PF00664 ABC transporter transmembrane region Thebr_0216 PF00005 ABC transporter Thebr_0217 PF00005 ABC transporter Thebr_0217 PF00664 ABC transporter transmembrane region Thebr_0218 PF09515 Thiamine transporter protein (Thia_YuaJ) Thebr_0219 PF01569 PAP2 superfamily Thebr_0220 PF00689 Cation transporting ATPase, C-terminus Thebr_0220 PF00690 Cation transporter/ATPase, N-terminus Thebr_0221 PF14716 Helix-hairpin-helix domain Thebr_0221 PF14791 DNA polymerase beta thumb Thebr_0221 PF02811 PHP domain Thebr_0222 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thebr_0222 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0222 PF13247 4Fe-4S dicluster domain Thebr_0223 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thebr_0223 PF00175 Oxidoreductase NAD-binding domain Thebr_0224 PF08240 Alcohol dehydrogenase GroES-like domain Thebr_0224 PF00107 Zinc-binding dehydrogenase Thebr_0225 PF13936 Helix-turn-helix domain Thebr_0226 PF00465 Iron-containing alcohol dehydrogenase Thebr_0229 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thebr_0229 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thebr_0230 PF01960 ArgJ family Thebr_0231 PF00696 Amino acid kinase family Thebr_0232 PF00202 Aminotransferase class-III Thebr_0233 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thebr_0233 PF00117 Glutamine amidotransferase class-I Thebr_0234 PF02142 MGS-like domain Thebr_0234 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thebr_0234 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thebr_0235 PF00764 Arginosuccinate synthase Thebr_0236 PF14698 Argininosuccinate lyase C-terminal Thebr_0236 PF00206 Lyase Thebr_0237 PF00689 Cation transporting ATPase, C-terminus Thebr_0237 PF00690 Cation transporter/ATPase, N-terminus Thebr_0239 PF00300 Histidine phosphatase superfamily (branch 1) Thebr_0240 PF00210 Ferritin-like domain Thebr_0245 PF02424 ApbE family Thebr_0249 PF06397 Desulfoferrodoxin, N-terminal domain Thebr_0249 PF01880 Desulfoferrodoxin Thebr_0251 PF10415 Fumarase C C-terminus Thebr_0251 PF00206 Lyase Thebr_0252 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thebr_0252 PF01926 50S ribosome-binding GTPase Thebr_0253 PF05977 Transmembrane secretion effector Thebr_0255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thebr_0255 PF03819 MazG nucleotide pyrophosphohydrolase domain Thebr_0256 PF00216 Bacterial DNA-binding protein Thebr_0257 PF01479 S4 domain Thebr_0258 PF08486 Stage II sporulation protein Thebr_0259 PF07873 YabP family Thebr_0262 PF07085 DRTGG domain Thebr_0262 PF02833 DHHA2 domain Thebr_0262 PF01368 DHH family Thebr_0262 PF00571 CBS domain Thebr_0265 PF00575 S1 RNA binding domain Thebr_0266 PF02541 Ppx/GppA phosphatase family Thebr_0266 PF01761 3-dehydroquinate synthase Thebr_0267 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thebr_0267 PF00480 ROK family Thebr_0268 PF01979 Amidohydrolase family Thebr_0269 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0270 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0271 PF03422 Carbohydrate binding module (family 6) Thebr_0271 PF16990 Carbohydrate binding module (family 35) Thebr_0271 PF13199 Glycosyl hydrolase family 66 Thebr_0272 PF00723 Glycosyl hydrolases family 15 Thebr_0276 PF00872 Transposase, Mutator family Thebr_0280 PF00072 Response regulator receiver domain Thebr_0280 PF00486 Transcriptional regulatory protein, C terminal Thebr_0281 PF00672 HAMP domain Thebr_0281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0281 PF00512 His Kinase A (phospho-acceptor) domain Thebr_0285 PF01022 Bacterial regulatory protein, arsR family Thebr_0286 PF00403 Heavy-metal-associated domain Thebr_0287 PF00291 Pyridoxal-phosphate dependent enzyme Thebr_0288 PF00266 Aminotransferase class-V Thebr_0290 PF00403 Heavy-metal-associated domain Thebr_0292 PF00990 Diguanylate cyclase, GGDEF domain Thebr_0292 PF00563 EAL domain Thebr_0292 PF03707 Bacterial signalling protein N terminal repeat Thebr_0293 PF05036 Sporulation related domain Thebr_0293 PF01520 N-acetylmuramoyl-L-alanine amidase Thebr_0296 PF00155 Aminotransferase class I and II Thebr_0297 PF08240 Alcohol dehydrogenase GroES-like domain Thebr_0297 PF00107 Zinc-binding dehydrogenase Thebr_0298 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thebr_0298 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thebr_0298 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thebr_0298 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thebr_0298 PF10371 Domain of unknown function Thebr_0301 PF12679 ABC-2 family transporter protein Thebr_0302 PF00005 ABC transporter Thebr_0305 PF00892 EamA-like transporter family Thebr_0307 PF07228 Stage II sporulation protein E (SpoIIE) Thebr_0308 PF11734 TilS substrate C-terminal domain Thebr_0308 PF01171 PP-loop family Thebr_0310 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_0310 PF06480 FtsH Extracellular Thebr_0310 PF17862 AAA+ lid domain Thebr_0310 PF01434 Peptidase family M41 Thebr_0311 PF00512 His Kinase A (phospho-acceptor) domain Thebr_0311 PF00989 PAS fold Thebr_0311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0312 PF01268 Formate--tetrahydrofolate ligase Thebr_0315 PF01039 Carboxyl transferase domain Thebr_0317 PF00682 HMGL-like Thebr_0317 PF00364 Biotin-requiring enzyme Thebr_0317 PF02436 Conserved carboxylase domain Thebr_0318 PF12822 ECF transporter, substrate-specific component Thebr_0319 PF03309 Type III pantothenate kinase Thebr_0320 PF03845 Spore germination protein Thebr_0321 PF03323 Bacillus/Clostridium GerA spore germination protein Thebr_0322 PF05504 Spore germination B3/ GerAC like, C-terminal Thebr_0326 PF00202 Aminotransferase class-III Thebr_0327 PF03449 Transcription elongation factor, N-terminal Thebr_0327 PF01272 Transcription elongation factor, GreA/GreB, C-term Thebr_0328 PF00152 tRNA synthetases class II (D, K and N) Thebr_0328 PF01336 OB-fold nucleic acid binding domain Thebr_0329 PF01227 GTP cyclohydrolase I Thebr_0330 PF00809 Pterin binding enzyme Thebr_0331 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thebr_0332 PF01242 6-pyruvoyl tetrahydropterin synthase Thebr_0333 PF17746 SfsA N-terminal OB domain Thebr_0333 PF03749 Sugar fermentation stimulation protein RE domain Thebr_0334 PF00326 Prolyl oligopeptidase family Thebr_0334 PF07676 WD40-like Beta Propeller Repeat Thebr_0336 PF05979 Bacterial protein of unknown function (DUF896) Thebr_0337 PF00202 Aminotransferase class-III Thebr_0339 PF00317 Ribonucleotide reductase, all-alpha domain Thebr_0339 PF03477 ATP cone domain Thebr_0339 PF02867 Ribonucleotide reductase, barrel domain Thebr_0340 PF00072 Response regulator receiver domain Thebr_0340 PF00990 Diguanylate cyclase, GGDEF domain Thebr_0341 PF05043 Mga helix-turn-helix domain Thebr_0341 PF08279 HTH domain Thebr_0341 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_0341 PF00874 PRD domain Thebr_0342 PF02378 Phosphotransferase system, EIIC Thebr_0342 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_0342 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_0344 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_0345 PF05524 PEP-utilising enzyme, N-terminal Thebr_0345 PF02896 PEP-utilising enzyme, TIM barrel domain Thebr_0345 PF00391 PEP-utilising enzyme, mobile domain Thebr_0346 PF00679 Elongation factor G C-terminus Thebr_0346 PF03144 Elongation factor Tu domain 2 Thebr_0346 PF03764 Elongation factor G, domain IV Thebr_0346 PF00009 Elongation factor Tu GTP binding domain Thebr_0346 PF14492 Elongation Factor G, domain II Thebr_0347 PF00390 Malic enzyme, N-terminal domain Thebr_0347 PF03949 Malic enzyme, NAD binding domain Thebr_0349 PF05848 CtsR N-terminal HTH domain Thebr_0349 PF17727 CtsR C-terminal dimerization domain Thebr_0350 PF02151 UvrB/uvrC motif Thebr_0351 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Thebr_0352 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_0352 PF07724 AAA domain (Cdc48 subfamily) Thebr_0352 PF17871 AAA lid domain Thebr_0352 PF02861 Clp amino terminal domain, pathogenicity island component Thebr_0352 PF10431 C-terminal, D2-small domain, of ClpB protein Thebr_0353 PF18073 Rubredoxin metal binding domain Thebr_0356 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thebr_0358 PF02542 YgbB family Thebr_0359 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thebr_0359 PF04073 Aminoacyl-tRNA editing domain Thebr_0359 PF03129 Anticodon binding domain Thebr_0361 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thebr_0362 PF00132 Bacterial transferase hexapeptide (six repeats) Thebr_0363 PF09190 DALR domain Thebr_0363 PF01406 tRNA synthetases class I (C) catalytic domain Thebr_0364 PF00636 Ribonuclease III domain Thebr_0365 PF00588 SpoU rRNA Methylase family Thebr_0365 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thebr_0366 PF05991 YacP-like NYN domain Thebr_0367 PF08281 Sigma-70, region 4 Thebr_0367 PF04542 Sigma-70 region 2 Thebr_0368 PF00009 Elongation factor Tu GTP binding domain Thebr_0368 PF03144 Elongation factor Tu domain 2 Thebr_0368 PF03143 Elongation factor Tu C-terminal domain Thebr_0369 PF00471 Ribosomal protein L33 Thebr_0370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Thebr_0371 PF00467 KOW motif Thebr_0371 PF02357 Transcription termination factor nusG Thebr_0372 PF00298 Ribosomal protein L11, RNA binding domain Thebr_0372 PF03946 Ribosomal protein L11, N-terminal domain Thebr_0373 PF00687 Ribosomal protein L1p/L10e family Thebr_0374 PF00466 Ribosomal protein L10 Thebr_0375 PF00542 Ribosomal protein L7/L12 C-terminal domain Thebr_0375 PF16320 Ribosomal protein L7/L12 dimerisation domain Thebr_0376 PF04563 RNA polymerase beta subunit Thebr_0376 PF04565 RNA polymerase Rpb2, domain 3 Thebr_0376 PF10385 RNA polymerase beta subunit external 1 domain Thebr_0376 PF04560 RNA polymerase Rpb2, domain 7 Thebr_0376 PF04561 RNA polymerase Rpb2, domain 2 Thebr_0376 PF00562 RNA polymerase Rpb2, domain 6 Thebr_0377 PF00623 RNA polymerase Rpb1, domain 2 Thebr_0377 PF04983 RNA polymerase Rpb1, domain 3 Thebr_0377 PF04998 RNA polymerase Rpb1, domain 5 Thebr_0377 PF05000 RNA polymerase Rpb1, domain 4 Thebr_0377 PF04997 RNA polymerase Rpb1, domain 1 Thebr_0378 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Thebr_0379 PF00164 Ribosomal protein S12/S23 Thebr_0380 PF00177 Ribosomal protein S7p/S5e Thebr_0381 PF03764 Elongation factor G, domain IV Thebr_0381 PF00679 Elongation factor G C-terminus Thebr_0381 PF14492 Elongation Factor G, domain II Thebr_0381 PF00009 Elongation factor Tu GTP binding domain Thebr_0381 PF03144 Elongation factor Tu domain 2 Thebr_0382 PF00009 Elongation factor Tu GTP binding domain Thebr_0382 PF03143 Elongation factor Tu C-terminal domain Thebr_0382 PF03144 Elongation factor Tu domain 2 Thebr_0383 PF00338 Ribosomal protein S10p/S20e Thebr_0384 PF00297 Ribosomal protein L3 Thebr_0385 PF00573 Ribosomal protein L4/L1 family Thebr_0386 PF00276 Ribosomal protein L23 Thebr_0387 PF03947 Ribosomal Proteins L2, C-terminal domain Thebr_0387 PF00181 Ribosomal Proteins L2, RNA binding domain Thebr_0388 PF00203 Ribosomal protein S19 Thebr_0389 PF00237 Ribosomal protein L22p/L17e Thebr_0390 PF00189 Ribosomal protein S3, C-terminal domain Thebr_0390 PF07650 KH domain Thebr_0391 PF00252 Ribosomal protein L16p/L10e Thebr_0392 PF00831 Ribosomal L29 protein Thebr_0393 PF00366 Ribosomal protein S17 Thebr_0394 PF00238 Ribosomal protein L14p/L23e Thebr_0395 PF00467 KOW motif Thebr_0395 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thebr_0396 PF00673 ribosomal L5P family C-terminus Thebr_0396 PF00281 Ribosomal protein L5 Thebr_0397 PF00253 Ribosomal protein S14p/S29e Thebr_0398 PF00410 Ribosomal protein S8 Thebr_0399 PF00347 Ribosomal protein L6 Thebr_0400 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thebr_0401 PF00333 Ribosomal protein S5, N-terminal domain Thebr_0401 PF03719 Ribosomal protein S5, C-terminal domain Thebr_0402 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Thebr_0403 PF00344 SecY translocase Thebr_0404 PF05191 Adenylate kinase, active site lid Thebr_0405 PF00557 Metallopeptidase family M24 Thebr_0407 PF01176 Translation initiation factor 1A / IF-1 Thebr_0408 PF00444 Ribosomal protein L36 Thebr_0409 PF00416 Ribosomal protein S13/S18 Thebr_0410 PF00411 Ribosomal protein S11 Thebr_0411 PF01479 S4 domain Thebr_0411 PF00163 Ribosomal protein S4/S9 N-terminal domain Thebr_0412 PF01000 RNA polymerase Rpb3/RpoA insert domain Thebr_0412 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thebr_0412 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thebr_0413 PF01196 Ribosomal protein L17 Thebr_0414 PF00005 ABC transporter Thebr_0415 PF00005 ABC transporter Thebr_0416 PF02361 Cobalt transport protein Thebr_0417 PF01416 tRNA pseudouridine synthase Thebr_0418 PF00572 Ribosomal protein L13 Thebr_0419 PF00380 Ribosomal protein S9/S16 Thebr_0422 PF00005 ABC transporter Thebr_0434 PF02796 Helix-turn-helix domain of resolvase Thebr_0434 PF00665 Integrase core domain Thebr_0436 PF13333 Integrase core domain Thebr_0436 PF00665 Integrase core domain Thebr_0436 PF13276 HTH-like domain Thebr_0441 PF01880 Desulfoferrodoxin Thebr_0443 PF13722 5TM C-terminal transporter carbon starvation CstA Thebr_0443 PF02554 Carbon starvation protein CstA Thebr_0444 PF01235 Sodium:alanine symporter family Thebr_0447 PF03334 Na+/H+ antiporter subunit Thebr_0451 PF00361 Proton-conducting membrane transporter Thebr_0452 PF00361 Proton-conducting membrane transporter Thebr_0454 PF02511 Thymidylate synthase complementing protein Thebr_0458 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0459 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thebr_0459 PF01476 LysM domain Thebr_0460 PF01520 N-acetylmuramoyl-L-alanine amidase Thebr_0460 PF08239 Bacterial SH3 domain Thebr_0461 PF13419 Haloacid dehalogenase-like hydrolase Thebr_0464 PF07726 ATPase family associated with various cellular activities (AAA) Thebr_0464 PF17863 AAA lid domain Thebr_0469 PF02457 DisA bacterial checkpoint controller nucleotide-binding Thebr_0471 PF00871 Acetokinase family Thebr_0472 PF01515 Phosphate acetyl/butaryl transferase Thebr_0473 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thebr_0473 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Thebr_0474 PF00871 Acetokinase family Thebr_0480 PF01515 Phosphate acetyl/butaryl transferase Thebr_0482 PF01553 Acyltransferase Thebr_0482 PF13193 AMP-binding enzyme C-terminal domain Thebr_0482 PF00501 AMP-binding enzyme Thebr_0483 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thebr_0483 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thebr_0483 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thebr_0483 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thebr_0484 PF01380 SIS domain Thebr_0485 PF00892 EamA-like transporter family Thebr_0486 PF01894 Uncharacterised protein family UPF0047 Thebr_0487 PF04679 ATP dependent DNA ligase C terminal region Thebr_0487 PF01068 ATP dependent DNA ligase domain Thebr_0487 PF04675 DNA ligase N terminus Thebr_0488 PF02735 Ku70/Ku80 beta-barrel domain Thebr_0492 PF03063 Prismane/CO dehydrogenase family Thebr_0496 PF01648 4'-phosphopantetheinyl transferase superfamily Thebr_0497 PF01256 Carbohydrate kinase Thebr_0497 PF03853 YjeF-related protein N-terminus Thebr_0499 PF00842 Alanine racemase, C-terminal domain Thebr_0499 PF01168 Alanine racemase, N-terminal domain Thebr_0501 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thebr_0503 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thebr_0503 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thebr_0504 PF00456 Transketolase, thiamine diphosphate binding domain Thebr_0505 PF02779 Transketolase, pyrimidine binding domain Thebr_0505 PF02780 Transketolase, C-terminal domain Thebr_0507 PF00365 Phosphofructokinase Thebr_0508 PF03553 Na+/H+ antiporter family Thebr_0509 PF00512 His Kinase A (phospho-acceptor) domain Thebr_0509 PF02702 Osmosensitive K+ channel His kinase sensor domain Thebr_0509 PF13493 Domain of unknown function (DUF4118) Thebr_0509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0510 PF00301 Rubredoxin Thebr_0511 PF01964 Radical SAM ThiC family Thebr_0512 PF13936 Helix-turn-helix domain Thebr_0513 PF03447 Homoserine dehydrogenase, NAD binding domain Thebr_0513 PF01842 ACT domain Thebr_0513 PF00742 Homoserine dehydrogenase Thebr_0514 PF01053 Cys/Met metabolism PLP-dependent enzyme Thebr_0515 PF00561 alpha/beta hydrolase fold Thebr_0516 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thebr_0516 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thebr_0517 PF17126 RsmF rRNA methyltransferase first C-terminal domain Thebr_0517 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Thebr_0517 PF01189 16S rRNA methyltransferase RsmB/F Thebr_0518 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thebr_0518 PF06165 Glycosyltransferase family 36 Thebr_0518 PF10091 Putative glucoamylase Thebr_0520 PF00005 ABC transporter Thebr_0529 PF13393 Histidyl-tRNA synthetase Thebr_0530 PF01634 ATP phosphoribosyltransferase Thebr_0531 PF00815 Histidinol dehydrogenase Thebr_0532 PF00155 Aminotransferase class I and II Thebr_0533 PF00475 Imidazoleglycerol-phosphate dehydratase Thebr_0534 PF00117 Glutamine amidotransferase class-I Thebr_0535 PF00977 Histidine biosynthesis protein Thebr_0536 PF00977 Histidine biosynthesis protein Thebr_0537 PF01502 Phosphoribosyl-AMP cyclohydrolase Thebr_0537 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Thebr_0538 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0539 PF00464 Serine hydroxymethyltransferase Thebr_0540 PF01244 Membrane dipeptidase (Peptidase family M19) Thebr_0541 PF02585 GlcNAc-PI de-N-acetylase Thebr_0542 PF03845 Spore germination protein Thebr_0544 PF00483 Nucleotidyl transferase Thebr_0547 PF01522 Polysaccharide deacetylase Thebr_0549 PF04309 Glycerol-3-phosphate responsive antiterminator Thebr_0550 PF00230 Major intrinsic protein Thebr_0551 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thebr_0551 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thebr_0552 PF01266 FAD dependent oxidoreductase Thebr_0553 PF04324 BFD-like [2Fe-2S] binding domain Thebr_0553 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0555 PF02954 Bacterial regulatory protein, Fis family Thebr_0555 PF00989 PAS fold Thebr_0555 PF00158 Sigma-54 interaction domain Thebr_0556 PF02733 Dak1 domain Thebr_0557 PF02734 DAK2 domain Thebr_0558 PF00381 PTS HPr component phosphorylation site Thebr_0558 PF00391 PEP-utilising enzyme, mobile domain Thebr_0558 PF03610 PTS system fructose IIA component Thebr_0558 PF05524 PEP-utilising enzyme, N-terminal Thebr_0559 PF00753 Metallo-beta-lactamase superfamily Thebr_0559 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thebr_0559 PF10996 Beta-Casp domain Thebr_0565 PF01434 Peptidase family M41 Thebr_0565 PF17862 AAA+ lid domain Thebr_0565 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_0566 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thebr_0568 PF02491 SHS2 domain inserted in FTSA Thebr_0572 PF13419 Haloacid dehalogenase-like hydrolase Thebr_0573 PF01386 Ribosomal L25p family Thebr_0573 PF14693 Ribosomal protein TL5, C-terminal domain Thebr_0574 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thebr_0574 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thebr_0576 PF03459 TOBE domain Thebr_0576 PF00005 ABC transporter Thebr_0576 PF17912 MalK OB fold domain Thebr_0577 PF13556 PucR C-terminal helix-turn-helix domain Thebr_0577 PF05651 Putative sugar diacid recognition Thebr_0577 PF17853 GGDEF-like domain Thebr_0578 PF00005 ABC transporter Thebr_0579 PF02687 FtsX-like permease family Thebr_0579 PF18075 FtsX extracellular domain Thebr_0580 PF01551 Peptidase family M23 Thebr_0580 PF04225 Opacity-associated protein A LysM-like domain Thebr_0581 PF17820 PDZ domain Thebr_0581 PF01471 Putative peptidoglycan binding domain Thebr_0581 PF03572 Peptidase family S41 Thebr_0582 PF17820 PDZ domain Thebr_0583 PF04029 2-phosphosulpholactate phosphatase Thebr_0584 PF00271 Helicase conserved C-terminal domain Thebr_0584 PF04851 Type III restriction enzyme, res subunit Thebr_0584 PF02151 UvrB/uvrC motif Thebr_0584 PF12344 Ultra-violet resistance protein B Thebr_0584 PF17757 UvrB interaction domain Thebr_0585 PF17760 UvrA interaction domain Thebr_0585 PF17755 UvrA DNA-binding domain Thebr_0586 PF16697 Inner membrane component of T3SS, cytoplasmic domain Thebr_0587 PF01098 Cell cycle protein Thebr_0588 PF00905 Penicillin binding protein transpeptidase domain Thebr_0589 PF02151 UvrB/uvrC motif Thebr_0589 PF01541 GIY-YIG catalytic domain Thebr_0589 PF08459 UvrC Helix-hairpin-helix N-terminal Thebr_0590 PF03099 Biotin/lipoate A/B protein ligase family Thebr_0590 PF08279 HTH domain Thebr_0590 PF02237 Biotin protein ligase C terminal domain Thebr_0591 PF07475 HPr Serine kinase C-terminal domain Thebr_0591 PF02603 HPr Serine kinase N terminus Thebr_0592 PF02811 PHP domain Thebr_0593 PF00480 ROK family Thebr_0594 PF13193 AMP-binding enzyme C-terminal domain Thebr_0594 PF00501 AMP-binding enzyme Thebr_0596 PF01871 AMMECR1 Thebr_0596 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Thebr_0605 PF00356 Bacterial regulatory proteins, lacI family Thebr_0606 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thebr_0606 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thebr_0607 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thebr_0607 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thebr_0612 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_0612 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_0613 PF08220 DeoR-like helix-turn-helix domain Thebr_0613 PF00455 DeoR C terminal sensor domain Thebr_0614 PF11890 Domain of unknown function (DUF3410) Thebr_0614 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_0614 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_0615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thebr_0615 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thebr_0618 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thebr_0618 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thebr_0620 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Thebr_0620 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Thebr_0621 PF00288 GHMP kinases N terminal domain Thebr_0621 PF10509 Galactokinase galactose-binding signature Thebr_0621 PF08544 GHMP kinases C terminal Thebr_0622 PF16363 GDP-mannose 4,6 dehydratase Thebr_0623 PF00480 ROK family Thebr_0623 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thebr_0628 PF16875 Glycosyl hydrolase family 36 N-terminal domain Thebr_0628 PF16874 Glycosyl hydrolase family 36 C-terminal domain Thebr_0629 PF00703 Glycosyl hydrolases family 2 Thebr_0629 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Thebr_0629 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Thebr_0629 PF16355 Domain of unknown function (DUF4982) Thebr_0629 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thebr_0630 PF01074 Glycosyl hydrolases family 38 N-terminal domain Thebr_0630 PF07748 Glycosyl hydrolases family 38 C-terminal domain Thebr_0630 PF09261 Alpha mannosidase middle domain Thebr_0631 PF01547 Bacterial extracellular solute-binding protein Thebr_0632 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0633 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0635 PF02311 AraC-like ligand binding domain Thebr_0635 PF12833 Helix-turn-helix domain Thebr_0636 PF03069 Acetamidase/Formamidase family Thebr_0637 PF00209 Sodium:neurotransmitter symporter family Thebr_0639 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thebr_0641 PF03717 Penicillin-binding Protein dimerisation domain Thebr_0641 PF00905 Penicillin binding protein transpeptidase domain Thebr_0641 PF03793 PASTA domain Thebr_0643 PF01547 Bacterial extracellular solute-binding protein Thebr_0644 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0645 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0646 PF00251 Glycosyl hydrolases family 32 N-terminal domain Thebr_0646 PF08244 Glycosyl hydrolases family 32 C terminal Thebr_0647 PF00294 pfkB family carbohydrate kinase Thebr_0648 PF00356 Bacterial regulatory proteins, lacI family Thebr_0649 PF01861 Branched-chain polyamine synthase A C-terminal domain Thebr_0652 PF01209 ubiE/COQ5 methyltransferase family Thebr_0655 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thebr_0656 PF10609 NUBPL iron-transfer P-loop NTPase Thebr_0659 PF00753 Metallo-beta-lactamase superfamily Thebr_0659 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thebr_0661 PF04055 Radical SAM superfamily Thebr_0661 PF06968 Biotin and Thiamin Synthesis associated domain Thebr_0662 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thebr_0662 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0664 PF01032 FecCD transport family Thebr_0665 PF00005 ABC transporter Thebr_0666 PF01980 tRNA-methyltransferase O Thebr_0672 PF02001 Protein of unknown function DUF134 Thebr_0676 PF13936 Helix-turn-helix domain Thebr_0677 PF06782 Uncharacterised protein family (UPF0236) Thebr_0679 PF00440 Bacterial regulatory proteins, tetR family Thebr_0680 PF01734 Patatin-like phospholipase Thebr_0682 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thebr_0682 PF01565 FAD binding domain Thebr_0683 PF02811 PHP domain Thebr_0684 PF03668 P-loop ATPase protein family Thebr_0685 PF01933 Uncharacterised protein family UPF0052 Thebr_0686 PF00128 Alpha amylase, catalytic domain Thebr_0686 PF00686 Starch binding domain Thebr_0686 PF01833 IPT/TIG domain Thebr_0686 PF02806 Alpha amylase, C-terminal all-beta domain Thebr_0687 PF13416 Bacterial extracellular solute-binding protein Thebr_0688 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0689 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0690 PF00128 Alpha amylase, catalytic domain Thebr_0690 PF02806 Alpha amylase, C-terminal all-beta domain Thebr_0690 PF01833 IPT/TIG domain Thebr_0690 PF00686 Starch binding domain Thebr_0693 PF13464 Domain of unknown function (DUF4115) Thebr_0694 PF00128 Alpha amylase, catalytic domain Thebr_0694 PF02903 Alpha amylase, N-terminal ig-like domain Thebr_0696 PF14527 WhiA LAGLIDADG-like domain Thebr_0696 PF10298 WhiA N-terminal LAGLIDADG-like domain Thebr_0696 PF02650 WhiA C-terminal HTH domain Thebr_0697 PF00381 PTS HPr component phosphorylation site Thebr_0698 PF03061 Thioesterase superfamily Thebr_0698 PF07085 DRTGG domain Thebr_0698 PF00571 CBS domain Thebr_0698 PF00392 Bacterial regulatory proteins, gntR family Thebr_0699 PF02811 PHP domain Thebr_0699 PF14579 Helix-hairpin-helix motif Thebr_0699 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thebr_0699 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thebr_0701 PF00365 Phosphofructokinase Thebr_0702 PF00224 Pyruvate kinase, barrel domain Thebr_0702 PF00391 PEP-utilising enzyme, mobile domain Thebr_0702 PF02887 Pyruvate kinase, alpha/beta domain Thebr_0704 PF01938 TRAM domain Thebr_0704 PF05958 tRNA (Uracil-5-)-methyltransferase Thebr_0707 PF01554 MatE Thebr_0708 PF00682 HMGL-like Thebr_0708 PF08502 LeuA allosteric (dimerisation) domain Thebr_0710 PF12146 Serine aminopeptidase, S33 Thebr_0711 PF01546 Peptidase family M20/M25/M40 Thebr_0711 PF07687 Peptidase dimerisation domain Thebr_0712 PF00881 Nitroreductase family Thebr_0713 PF00342 Phosphoglucose isomerase Thebr_0714 PF11897 Protein of unknown function (DUF3417) Thebr_0714 PF00343 Carbohydrate phosphorylase Thebr_0716 PF02219 Methylenetetrahydrofolate reductase Thebr_0716 PF02574 Homocysteine S-methyltransferase Thebr_0717 PF02574 Homocysteine S-methyltransferase Thebr_0717 PF00809 Pterin binding enzyme Thebr_0717 PF02965 Vitamin B12 dependent methionine synthase, activation domain Thebr_0717 PF02310 B12 binding domain Thebr_0717 PF02607 B12 binding domain Thebr_0718 PF04073 Aminoacyl-tRNA editing domain Thebr_0719 PF05067 Manganese containing catalase Thebr_0722 PF01938 TRAM domain Thebr_0722 PF05958 tRNA (Uracil-5-)-methyltransferase Thebr_0728 PF00535 Glycosyl transferase family 2 Thebr_0729 PF02660 Glycerol-3-phosphate acyltransferase Thebr_0731 PF12002 MgsA AAA+ ATPase C terminal Thebr_0731 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_0731 PF16193 AAA C-terminal domain Thebr_0735 PF00849 RNA pseudouridylate synthase Thebr_0737 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thebr_0737 PF02824 TGS domain Thebr_0737 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thebr_0737 PF03129 Anticodon binding domain Thebr_0740 PF13186 Iron-sulfur cluster-binding domain Thebr_0740 PF04055 Radical SAM superfamily Thebr_0744 PF05362 Lon protease (S16) C-terminal proteolytic domain Thebr_0744 PF13654 AAA domain Thebr_0745 PF08331 Domain of unknown function (DUF1730) Thebr_0746 PF10576 Iron-sulfur binding domain of endonuclease III Thebr_0746 PF00730 HhH-GPD superfamily base excision DNA repair protein Thebr_0746 PF00633 Helix-hairpin-helix motif Thebr_0747 PF04294 VanW like protein Thebr_0748 PF01475 Ferric uptake regulator family Thebr_0750 PF00708 Acylphosphatase Thebr_0751 PF04963 Sigma-54 factor, core binding domain Thebr_0751 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thebr_0751 PF04552 Sigma-54, DNA binding domain Thebr_0752 PF04198 Putative sugar-binding domain Thebr_0753 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thebr_0753 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thebr_0754 PF00162 Phosphoglycerate kinase Thebr_0755 PF00121 Triosephosphate isomerase Thebr_0757 PF03952 Enolase, N-terminal domain Thebr_0757 PF00113 Enolase, C-terminal TIM barrel domain Thebr_0758 PF03840 Preprotein translocase SecG subunit Thebr_0759 PF13286 Phosphohydrolase-associated domain Thebr_0759 PF01966 HD domain Thebr_0760 PF01807 CHC2 zinc finger Thebr_0760 PF08275 DNA primase catalytic core, N-terminal domain Thebr_0760 PF10410 DnaB-helicase binding domain of primase Thebr_0761 PF00140 Sigma-70 factor, region 1.2 Thebr_0761 PF03979 Sigma-70 factor, region 1.1 Thebr_0761 PF04545 Sigma-70, region 4 Thebr_0761 PF04539 Sigma-70 region 3 Thebr_0761 PF04542 Sigma-70 region 2 Thebr_0762 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Thebr_0763 PF01784 NIF3 (NGG1p interacting factor 3) Thebr_0764 PF01048 Phosphorylase superfamily Thebr_0765 PF01238 Phosphomannose isomerase type I Thebr_0767 PF00999 Sodium/hydrogen exchanger family Thebr_0770 PF03773 Predicted permease Thebr_0772 PF01546 Peptidase family M20/M25/M40 Thebr_0773 PF01790 Prolipoprotein diacylglyceryl transferase Thebr_0774 PF13185 GAF domain Thebr_0775 PF01106 NifU-like domain Thebr_0779 PF02146 Sir2 family Thebr_0780 PF00313 'Cold-shock' DNA-binding domain Thebr_0781 PF01430 Hsp33 protein Thebr_0782 PF00085 Thioredoxin Thebr_0783 PF00072 Response regulator receiver domain Thebr_0783 PF00486 Transcriptional regulatory protein, C terminal Thebr_0786 PF04286 Protein of unknown function (DUF445) Thebr_0787 PF03129 Anticodon binding domain Thebr_0787 PF02824 TGS domain Thebr_0787 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thebr_0787 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thebr_0789 PF01264 Chorismate synthase Thebr_0790 PF00707 Translation initiation factor IF-3, C-terminal domain Thebr_0790 PF05198 Translation initiation factor IF-3, N-terminal domain Thebr_0791 PF01632 Ribosomal protein L35 Thebr_0792 PF00453 Ribosomal protein L20 Thebr_0793 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thebr_0793 PF00588 SpoU rRNA Methylase family Thebr_0794 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Thebr_0794 PF01409 tRNA synthetases class II core domain (F) Thebr_0795 PF03483 B3/4 domain Thebr_0795 PF03484 tRNA synthetase B5 domain Thebr_0795 PF03147 Ferredoxin-fold anticodon binding domain Thebr_0795 PF01588 Putative tRNA binding domain Thebr_0795 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thebr_0797 PF12392 Collagenase Thebr_0797 PF01136 Peptidase family U32 Thebr_0798 PF00488 MutS domain V Thebr_0798 PF01713 Smr domain Thebr_0799 PF04463 Protein of unknown function (DUF523) Thebr_0801 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0801 PF07730 Histidine kinase Thebr_0801 PF05384 Sensor protein DegS Thebr_0802 PF00072 Response regulator receiver domain Thebr_0802 PF00196 Bacterial regulatory proteins, luxR family Thebr_0803 PF02127 Aminopeptidase I zinc metalloprotease (M18) Thebr_0804 PF00188 Cysteine-rich secretory protein family Thebr_0807 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0807 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thebr_0808 PF03099 Biotin/lipoate A/B protein ligase family Thebr_0809 PF04055 Radical SAM superfamily Thebr_0810 PF00158 Sigma-54 interaction domain Thebr_0810 PF02954 Bacterial regulatory protein, Fis family Thebr_0810 PF13426 PAS domain Thebr_0811 PF00118 TCP-1/cpn60 chaperonin family Thebr_0812 PF00676 Dehydrogenase E1 component Thebr_0813 PF02779 Transketolase, pyrimidine binding domain Thebr_0813 PF02780 Transketolase, C-terminal domain Thebr_0814 PF01513 ATP-NAD kinase Thebr_0815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thebr_0815 PF00364 Biotin-requiring enzyme Thebr_0815 PF02817 e3 binding domain Thebr_0818 PF02583 Metal-sensitive transcriptional repressor Thebr_0819 PF00266 Aminotransferase class-V Thebr_0820 PF02568 Thiamine biosynthesis protein (ThiI) Thebr_0820 PF02926 THUMP domain Thebr_0822 PF01926 50S ribosome-binding GTPase Thebr_0822 PF06071 Protein of unknown function (DUF933) Thebr_0823 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Thebr_0824 PF05193 Peptidase M16 inactive domain Thebr_0825 PF00675 Insulinase (Peptidase family M16) Thebr_0825 PF05193 Peptidase M16 inactive domain Thebr_0826 PF02381 MraZ protein, putative antitoxin-like Thebr_0827 PF01795 MraW methylase family Thebr_0828 PF04977 Septum formation initiator Thebr_0829 PF03717 Penicillin-binding Protein dimerisation domain Thebr_0829 PF00905 Penicillin binding protein transpeptidase domain Thebr_0829 PF03793 PASTA domain Thebr_0830 PF01225 Mur ligase family, catalytic domain Thebr_0830 PF08245 Mur ligase middle domain Thebr_0830 PF02875 Mur ligase family, glutamate ligase domain Thebr_0831 PF02875 Mur ligase family, glutamate ligase domain Thebr_0831 PF01225 Mur ligase family, catalytic domain Thebr_0831 PF08245 Mur ligase middle domain Thebr_0832 PF00953 Glycosyl transferase family 4 Thebr_0832 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thebr_0833 PF08245 Mur ligase middle domain Thebr_0833 PF02875 Mur ligase family, glutamate ligase domain Thebr_0834 PF01098 Cell cycle protein Thebr_0835 PF04101 Glycosyltransferase family 28 C-terminal domain Thebr_0835 PF03033 Glycosyltransferase family 28 N-terminal domain Thebr_0836 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thebr_0838 PF05949 Bacterial protein of unknown function (DUF881) Thebr_0839 PF06947 Protein of unknown function (DUF1290) Thebr_0840 PF02491 SHS2 domain inserted in FTSA Thebr_0841 PF12327 FtsZ family, C-terminal domain Thebr_0841 PF00091 Tubulin/FtsZ family, GTPase domain Thebr_0842 PF03419 Sporulation factor SpoIIGA Thebr_0843 PF04545 Sigma-70, region 4 Thebr_0843 PF04542 Sigma-70 region 2 Thebr_0844 PF04539 Sigma-70 region 3 Thebr_0844 PF04542 Sigma-70 region 2 Thebr_0844 PF04545 Sigma-70, region 4 Thebr_0845 PF05239 PRC-barrel domain Thebr_0846 PF03477 ATP cone domain Thebr_0847 PF00486 Transcriptional regulatory protein, C terminal Thebr_0847 PF00072 Response regulator receiver domain Thebr_0848 PF00989 PAS fold Thebr_0848 PF00512 His Kinase A (phospho-acceptor) domain Thebr_0848 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_0848 PF16736 Single Cache-like Thebr_0849 PF12849 PBP superfamily domain Thebr_0850 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0851 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0852 PF00005 ABC transporter Thebr_0853 PF01895 PhoU domain Thebr_0856 PF14045 YIEGIA protein Thebr_0861 PF01926 50S ribosome-binding GTPase Thebr_0861 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thebr_0862 PF02660 Glycerol-3-phosphate acyltransferase Thebr_0863 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thebr_0863 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thebr_0866 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thebr_0867 PF17853 GGDEF-like domain Thebr_0867 PF05651 Putative sugar diacid recognition Thebr_0867 PF13556 PucR C-terminal helix-turn-helix domain Thebr_0868 PF13936 Helix-turn-helix domain Thebr_0872 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thebr_0872 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Thebr_0875 PF00899 ThiF family Thebr_0878 PF12849 PBP superfamily domain Thebr_0879 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_0880 PF00005 ABC transporter Thebr_0881 PF00994 Probable molybdopterin binding domain Thebr_0882 PF00994 Probable molybdopterin binding domain Thebr_0882 PF03454 MoeA C-terminal region (domain IV) Thebr_0882 PF03453 MoeA N-terminal region (domain I and II) Thebr_0883 PF12727 PBP superfamily domain Thebr_0883 PF12728 Helix-turn-helix domain Thebr_0884 PF06463 Molybdenum Cofactor Synthesis C Thebr_0884 PF04055 Radical SAM superfamily Thebr_0885 PF01967 MoaC family Thebr_0891 PF01042 Endoribonuclease L-PSP Thebr_0893 PF01168 Alanine racemase, N-terminal domain Thebr_0894 PF04472 Cell division protein SepF Thebr_0896 PF17774 Putative RNA-binding domain in YlmH Thebr_0896 PF01479 S4 domain Thebr_0897 PF05103 DivIVA protein Thebr_0899 PF06827 Zinc finger found in FPG and IleRS Thebr_0899 PF00133 tRNA synthetases class I (I, L, M and V) Thebr_0899 PF08264 Anticodon-binding domain of tRNA Thebr_0900 PF01979 Amidohydrolase family Thebr_0901 PF00596 Class II Aldolase and Adducin N-terminal domain Thebr_0902 PF00392 Bacterial regulatory proteins, gntR family Thebr_0902 PF07702 UTRA domain Thebr_0903 PF08240 Alcohol dehydrogenase GroES-like domain Thebr_0903 PF00107 Zinc-binding dehydrogenase Thebr_0904 PF01008 Initiation factor 2 subunit family Thebr_0905 PF00005 ABC transporter Thebr_0906 PF02361 Cobalt transport protein Thebr_0907 PF01048 Phosphorylase superfamily Thebr_0909 PF01053 Cys/Met metabolism PLP-dependent enzyme Thebr_0910 PF01910 Thiamine-binding protein Thebr_0911 PF09587 Bacterial capsule synthesis protein PGA_cap Thebr_0912 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0914 PF00591 Glycosyl transferase family, a/b domain Thebr_0914 PF02885 Glycosyl transferase family, helical bundle domain Thebr_0914 PF00117 Glutamine amidotransferase class-I Thebr_0915 PF02885 Glycosyl transferase family, helical bundle domain Thebr_0915 PF00591 Glycosyl transferase family, a/b domain Thebr_0916 PF00218 Indole-3-glycerol phosphate synthase Thebr_0917 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thebr_0918 PF00291 Pyridoxal-phosphate dependent enzyme Thebr_0919 PF00290 Tryptophan synthase alpha chain Thebr_0920 PF18152 DAHP synthase ferredoxin-like domain Thebr_0920 PF00793 DAHP synthetase I family Thebr_0921 PF00578 AhpC/TSA family Thebr_0922 PF01053 Cys/Met metabolism PLP-dependent enzyme Thebr_0932 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Thebr_0935 PF08281 Sigma-70, region 4 Thebr_0935 PF04542 Sigma-70 region 2 Thebr_0936 PF00881 Nitroreductase family Thebr_0937 PF01925 Sulfite exporter TauE/SafE Thebr_0938 PF01741 Large-conductance mechanosensitive channel, MscL Thebr_0949 PF16124 RecQ zinc-binding Thebr_0949 PF09382 RQC domain Thebr_0949 PF00271 Helicase conserved C-terminal domain Thebr_0949 PF00270 DEAD/DEAH box helicase Thebr_0949 PF00570 HRDC domain Thebr_0953 PF00271 Helicase conserved C-terminal domain Thebr_0953 PF00176 SNF2 family N-terminal domain Thebr_0957 PF13936 Helix-turn-helix domain Thebr_0961 PF00005 ABC transporter Thebr_0961 PF00664 ABC transporter transmembrane region Thebr_0966 PF00005 ABC transporter Thebr_0971 PF13186 Iron-sulfur cluster-binding domain Thebr_0971 PF04055 Radical SAM superfamily Thebr_0972 PF00005 ABC transporter Thebr_0972 PF00664 ABC transporter transmembrane region Thebr_0978 PF00664 ABC transporter transmembrane region Thebr_0978 PF00005 ABC transporter Thebr_0979 PF00664 ABC transporter transmembrane region Thebr_0979 PF00005 ABC transporter Thebr_0982 PF01470 Pyroglutamyl peptidase Thebr_0984 PF01965 DJ-1/PfpI family Thebr_0985 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thebr_0985 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_0986 PF08386 TAP-like protein Thebr_0986 PF00561 alpha/beta hydrolase fold Thebr_0987 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_0990 PF03009 Glycerophosphoryl diester phosphodiesterase family Thebr_0992 PF01661 Macro domain Thebr_0993 PF02673 Bacitracin resistance protein BacA Thebr_0995 PF14098 Small, acid-soluble spore protein I Thebr_0998 PF00258 Flavodoxin Thebr_0998 PF00753 Metallo-beta-lactamase superfamily Thebr_0999 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thebr_1001 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thebr_1001 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thebr_1002 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thebr_1002 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thebr_1003 PF04199 Putative cyclase Thebr_1005 PF03315 Serine dehydratase beta chain Thebr_1006 PF03313 Serine dehydratase alpha chain Thebr_1007 PF01432 Peptidase family M3 Thebr_1007 PF08439 Oligopeptidase F Thebr_1008 PF01761 3-dehydroquinate synthase Thebr_1009 PF01817 Chorismate mutase type II Thebr_1009 PF00800 Prephenate dehydratase Thebr_1009 PF01842 ACT domain Thebr_1010 PF00793 DAHP synthetase I family Thebr_1010 PF18152 DAHP synthase ferredoxin-like domain Thebr_1011 PF02153 Prephenate dehydrogenase Thebr_1011 PF01842 ACT domain Thebr_1012 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thebr_1014 PF01471 Putative peptidoglycan binding domain Thebr_1014 PF07486 Cell Wall Hydrolase Thebr_1015 PF01169 Uncharacterized protein family UPF0016 Thebr_1017 PF00480 ROK family Thebr_1018 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Thebr_1019 PF02683 Cytochrome C biogenesis protein transmembrane region Thebr_1020 PF00578 AhpC/TSA family Thebr_1021 PF00085 Thioredoxin Thebr_1022 PF01276 Orn/Lys/Arg decarboxylase, major domain Thebr_1022 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thebr_1026 PF08486 Stage II sporulation protein Thebr_1027 PF01926 50S ribosome-binding GTPase Thebr_1027 PF16360 GTP-binding GTPase Middle Region Thebr_1027 PF13167 GTP-binding GTPase N-terminal Thebr_1030 PF09186 Domain of unknown function (DUF1949) Thebr_1030 PF01205 Uncharacterized protein family UPF0029 Thebr_1034 PF00291 Pyridoxal-phosphate dependent enzyme Thebr_1035 PF01709 Transcriptional regulator Thebr_1036 PF01584 CheW-like domain Thebr_1038 PF02075 Crossover junction endodeoxyribonuclease RuvC Thebr_1039 PF07499 RuvA, C-terminal domain Thebr_1039 PF01330 RuvA N terminal domain Thebr_1040 PF17864 RuvB AAA lid domain Thebr_1040 PF05491 RuvB C-terminal winged helix domain Thebr_1040 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thebr_1041 PF11146 Protein of unknown function (DUF2905) Thebr_1042 PF02547 Queuosine biosynthesis protein Thebr_1043 PF01702 Queuine tRNA-ribosyltransferase Thebr_1047 PF04055 Radical SAM superfamily Thebr_1048 PF00132 Bacterial transferase hexapeptide (six repeats) Thebr_1049 PF07549 SecD/SecF GG Motif Thebr_1049 PF02355 Protein export membrane protein Thebr_1050 PF02355 Protein export membrane protein Thebr_1050 PF07549 SecD/SecF GG Motif Thebr_1051 PF03109 ABC1 family Thebr_1052 PF17768 RecJ OB domain Thebr_1052 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Thebr_1052 PF01368 DHH family Thebr_1052 PF02272 DHHA1 domain Thebr_1053 PF00156 Phosphoribosyl transferase domain Thebr_1054 PF04607 Region found in RelA / SpoT proteins Thebr_1054 PF13291 ACT domain Thebr_1054 PF02824 TGS domain Thebr_1055 PF02580 D-Tyr-tRNA(Tyr) deacylase Thebr_1056 PF00753 Metallo-beta-lactamase superfamily Thebr_1057 PF02687 FtsX-like permease family Thebr_1057 PF12704 MacB-like periplasmic core domain Thebr_1058 PF00005 ABC transporter Thebr_1062 PF13393 Histidyl-tRNA synthetase Thebr_1062 PF03129 Anticodon binding domain Thebr_1063 PF02938 GAD domain Thebr_1063 PF01336 OB-fold nucleic acid binding domain Thebr_1063 PF00152 tRNA synthetases class II (D, K and N) Thebr_1064 PF00899 ThiF family Thebr_1065 PF02583 Metal-sensitive transcriptional repressor Thebr_1066 PF00085 Thioredoxin Thebr_1069 PF00291 Pyridoxal-phosphate dependent enzyme Thebr_1070 PF16552 D-ornithine 4,5-aminomutase alpha-subunit Thebr_1071 PF02310 B12 binding domain Thebr_1071 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Thebr_1071 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Thebr_1072 PF13941 MutL protein Thebr_1073 PF01168 Alanine racemase, N-terminal domain Thebr_1074 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Thebr_1075 PF02082 Transcriptional regulator Thebr_1078 PF01594 AI-2E family transporter Thebr_1079 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thebr_1079 PF01411 tRNA synthetases class II (A) Thebr_1079 PF02272 DHHA1 domain Thebr_1080 PF06135 IreB regulatory phosphoprotein Thebr_1081 PF03652 Holliday junction resolvase Thebr_1082 PF06949 Protein of unknown function (DUF1292) Thebr_1083 PF01475 Ferric uptake regulator family Thebr_1084 PF00753 Metallo-beta-lactamase superfamily Thebr_1084 PF17770 Ribonuclease J C-terminal domain Thebr_1084 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thebr_1085 PF06133 Control of competence regulator ComK, YlbF/YmcA Thebr_1086 PF06177 QueT transporter Thebr_1087 PF02618 YceG-like family Thebr_1090 PF00905 Penicillin binding protein transpeptidase domain Thebr_1090 PF03717 Penicillin-binding Protein dimerisation domain Thebr_1091 PF04542 Sigma-70 region 2 Thebr_1091 PF04545 Sigma-70, region 4 Thebr_1093 PF01488 Shikimate / quinate 5-dehydrogenase Thebr_1093 PF08501 Shikimate dehydrogenase substrate binding domain Thebr_1094 PF00437 Type II/IV secretion system protein Thebr_1095 PF00437 Type II/IV secretion system protein Thebr_1096 PF00482 Type II secretion system (T2SS), protein F Thebr_1097 PF07963 Prokaryotic N-terminal methylation motif Thebr_1097 PF00114 Pilin (bacterial filament) Thebr_1098 PF01478 Type IV leader peptidase family Thebr_1098 PF06750 Bacterial Peptidase A24 N-terminal domain Thebr_1107 PF01202 Shikimate kinase Thebr_1109 PF00696 Amino acid kinase family Thebr_1109 PF01472 PUA domain Thebr_1110 PF00171 Aldehyde dehydrogenase family Thebr_1111 PF01220 Dehydroquinase class II Thebr_1112 PF00557 Metallopeptidase family M24 Thebr_1112 PF01321 Creatinase/Prolidase N-terminal domain Thebr_1113 PF01132 Elongation factor P (EF-P) OB domain Thebr_1113 PF08207 Elongation factor P (EF-P) KOW-like domain Thebr_1113 PF09285 Elongation factor P, C-terminal Thebr_1117 PF06686 Stage III sporulation protein AC/AD protein family Thebr_1118 PF06686 Stage III sporulation protein AC/AD protein family Thebr_1119 PF09546 Stage III sporulation protein AE (spore_III_AE) Thebr_1120 PF09581 Stage III sporulation protein AF (Spore_III_AF) Thebr_1123 PF03780 Asp23 family, cell envelope-related function Thebr_1124 PF01029 NusB family Thebr_1125 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thebr_1125 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thebr_1126 PF13742 OB-fold nucleic acid binding domain Thebr_1126 PF02601 Exonuclease VII, large subunit Thebr_1127 PF02609 Exonuclease VII small subunit Thebr_1128 PF00348 Polyprenyl synthetase Thebr_1130 PF02780 Transketolase, C-terminal domain Thebr_1130 PF02779 Transketolase, pyrimidine binding domain Thebr_1130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thebr_1131 PF01728 FtsJ-like methyltransferase Thebr_1131 PF01479 S4 domain Thebr_1132 PF01513 ATP-NAD kinase Thebr_1133 PF01316 Arginine repressor, DNA binding domain Thebr_1133 PF02863 Arginine repressor, C-terminal domain Thebr_1134 PF02463 RecF/RecN/SMC N terminal domain Thebr_1135 PF17820 PDZ domain Thebr_1135 PF05580 SpoIVB peptidase S55 Thebr_1136 PF08769 Sporulation initiation factor Spo0A C terminal Thebr_1136 PF00072 Response regulator receiver domain Thebr_1139 PF00535 Glycosyl transferase family 2 Thebr_1140 PF00953 Glycosyl transferase family 4 Thebr_1143 PF00293 NUDIX domain Thebr_1145 PF01944 Stage II sporulation protein M Thebr_1146 PF00589 Phage integrase family Thebr_1146 PF02899 Phage integrase, N-terminal SAM-like domain Thebr_1147 PF00768 D-alanyl-D-alanine carboxypeptidase Thebr_1147 PF07943 Penicillin-binding protein 5, C-terminal domain Thebr_1148 PF01740 STAS domain Thebr_1149 PF13581 Histidine kinase-like ATPase domain Thebr_1150 PF04545 Sigma-70, region 4 Thebr_1150 PF04539 Sigma-70 region 3 Thebr_1150 PF04542 Sigma-70 region 2 Thebr_1151 PF07311 Dodecin Thebr_1152 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thebr_1154 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thebr_1155 PF13735 tRNA nucleotidyltransferase domain 2 putative Thebr_1155 PF12627 Probable RNA and SrmB- binding site of polymerase A Thebr_1155 PF01743 Poly A polymerase head domain Thebr_1156 PF02163 Peptidase family M50 Thebr_1157 PF02616 Segregation and condensation protein ScpA Thebr_1158 PF04079 Segregation and condensation complex subunit ScpB Thebr_1159 PF06207 Protein of unknown function (DUF1002) Thebr_1161 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Thebr_1162 PF00375 Sodium:dicarboxylate symporter family Thebr_1163 PF01972 Serine dehydrogenase proteinase Thebr_1163 PF01957 NfeD-like C-terminal, partner-binding Thebr_1164 PF12127 SigmaW regulon antibacterial Thebr_1166 PF07943 Penicillin-binding protein 5, C-terminal domain Thebr_1166 PF00768 D-alanyl-D-alanine carboxypeptidase Thebr_1168 PF01134 Glucose inhibited division protein A Thebr_1168 PF13932 GidA associated domain Thebr_1169 PF00849 RNA pseudouridylate synthase Thebr_1169 PF01479 S4 domain Thebr_1171 PF17284 Spermidine synthase tetramerisation domain Thebr_1172 PF00491 Arginase family Thebr_1173 PF02436 Conserved carboxylase domain Thebr_1173 PF00682 HMGL-like Thebr_1173 PF00364 Biotin-requiring enzyme Thebr_1174 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thebr_1174 PF01476 LysM domain Thebr_1176 PF01975 Survival protein SurE Thebr_1178 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thebr_1178 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thebr_1178 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thebr_1179 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thebr_1181 PF01380 SIS domain Thebr_1181 PF01418 Helix-turn-helix domain, rpiR family Thebr_1182 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thebr_1182 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Thebr_1184 PF03600 Citrate transporter Thebr_1185 PF01566 Natural resistance-associated macrophage protein Thebr_1186 PF03746 LamB/YcsF family Thebr_1187 PF02682 Carboxyltransferase domain, subdomain C and D Thebr_1188 PF02626 Carboxyltransferase domain, subdomain A and B Thebr_1189 PF07286 Protein of unknown function (DUF1445) Thebr_1192 PF00300 Histidine phosphatase superfamily (branch 1) Thebr_1195 PF07736 Chorismate mutase type I Thebr_1196 PF02224 Cytidylate kinase Thebr_1197 PF01553 Acyltransferase Thebr_1198 PF02401 LytB protein Thebr_1199 PF00575 S1 RNA binding domain Thebr_1199 PF02401 LytB protein Thebr_1200 PF02675 S-adenosylmethionine decarboxylase Thebr_1201 PF03705 CheR methyltransferase, all-alpha domain Thebr_1201 PF01739 CheR methyltransferase, SAM binding domain Thebr_1202 PF00919 Uncharacterized protein family UPF0004 Thebr_1202 PF04055 Radical SAM superfamily Thebr_1202 PF01938 TRAM domain Thebr_1203 PF05192 MutS domain III Thebr_1203 PF00488 MutS domain V Thebr_1203 PF05190 MutS family domain IV Thebr_1203 PF05188 MutS domain II Thebr_1203 PF01624 MutS domain I Thebr_1204 PF01119 DNA mismatch repair protein, C-terminal domain Thebr_1204 PF08676 MutL C terminal dimerisation domain Thebr_1206 PF17209 Hfq protein Thebr_1207 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thebr_1207 PF03807 NADP oxidoreductase coenzyme F420-dependent Thebr_1208 PF00075 RNase H Thebr_1209 PF02899 Phage integrase, N-terminal SAM-like domain Thebr_1209 PF00589 Phage integrase family Thebr_1210 PF06838 Methionine gamma-lyase Thebr_1211 PF17866 AAA lid domain Thebr_1211 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_1212 PF10397 Adenylosuccinate lyase C-terminus Thebr_1212 PF00206 Lyase Thebr_1213 PF00155 Aminotransferase class I and II Thebr_1214 PF02811 PHP domain Thebr_1215 PF04232 Stage V sporulation protein S (SpoVS) Thebr_1216 PF13277 YmdB-like protein Thebr_1217 PF12072 Domain of unknown function (DUF3552) Thebr_1217 PF00013 KH domain Thebr_1217 PF01966 HD domain Thebr_1219 PF02631 RecX family Thebr_1220 PF00154 recA bacterial DNA recombination protein Thebr_1221 PF00994 Probable molybdopterin binding domain Thebr_1221 PF18146 Damage-inducible protein CinA KH domain Thebr_1221 PF02464 Competence-damaged protein Thebr_1222 PF01066 CDP-alcohol phosphatidyltransferase Thebr_1223 PF00919 Uncharacterized protein family UPF0004 Thebr_1223 PF04055 Radical SAM superfamily Thebr_1223 PF18693 TRAM domain Thebr_1224 PF01580 FtsK/SpoIIIE family Thebr_1224 PF09397 Ftsk gamma domain Thebr_1224 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thebr_1224 PF17854 FtsK alpha domain Thebr_1226 PF00574 Clp protease Thebr_1227 PF00696 Amino acid kinase family Thebr_1227 PF13840 ACT domain Thebr_1229 PF00692 dUTPase Thebr_1230 PF05193 Peptidase M16 inactive domain Thebr_1230 PF00675 Insulinase (Peptidase family M16) Thebr_1231 PF01522 Polysaccharide deacetylase Thebr_1232 PF00013 KH domain Thebr_1232 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thebr_1232 PF01138 3' exoribonuclease family, domain 1 Thebr_1232 PF03725 3' exoribonuclease family, domain 2 Thebr_1232 PF00575 S1 RNA binding domain Thebr_1233 PF00312 Ribosomal protein S15 Thebr_1234 PF06574 FAD synthetase Thebr_1234 PF01687 Riboflavin kinase Thebr_1235 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thebr_1235 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thebr_1235 PF09157 Pseudouridine synthase II TruB, C-terminal Thebr_1236 PF02272 DHHA1 domain Thebr_1236 PF01368 DHH family Thebr_1237 PF02033 Ribosome-binding factor A Thebr_1238 PF04760 Translation initiation factor IF-2, N-terminal region Thebr_1238 PF00009 Elongation factor Tu GTP binding domain Thebr_1238 PF11987 Translation-initiation factor 2 Thebr_1240 PF04296 Protein of unknown function (DUF448) Thebr_1241 PF13184 NusA-like KH domain Thebr_1241 PF08529 NusA N-terminal domain Thebr_1241 PF00575 S1 RNA binding domain Thebr_1242 PF17384 RimP C-terminal SH3 domain Thebr_1242 PF02576 RimP N-terminal domain Thebr_1243 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thebr_1243 PF02811 PHP domain Thebr_1243 PF11490 DNA polymerase III polC-type N-terminus II Thebr_1243 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thebr_1243 PF00929 Exonuclease Thebr_1243 PF14579 Helix-hairpin-helix motif Thebr_1244 PF00535 Glycosyl transferase family 2 Thebr_1245 PF04551 GcpE protein Thebr_1246 PF02163 Peptidase family M50 Thebr_1246 PF17820 PDZ domain Thebr_1247 PF13288 DXP reductoisomerase C-terminal domain Thebr_1247 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thebr_1247 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thebr_1249 PF01255 Putative undecaprenyl diphosphate synthase Thebr_1251 PF01765 Ribosome recycling factor Thebr_1252 PF00696 Amino acid kinase family Thebr_1253 PF00889 Elongation factor TS Thebr_1254 PF00318 Ribosomal protein S2 Thebr_1257 PF04545 Sigma-70, region 4 Thebr_1257 PF04539 Sigma-70 region 3 Thebr_1257 PF04542 Sigma-70 region 2 Thebr_1258 PF03975 CheD chemotactic sensory transduction Thebr_1259 PF04509 CheC-like family Thebr_1260 PF01584 CheW-like domain Thebr_1261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_1261 PF01584 CheW-like domain Thebr_1261 PF02895 Signal transducing histidine kinase, homodimeric domain Thebr_1261 PF01627 Hpt domain Thebr_1261 PF07194 P2 response regulator binding domain Thebr_1262 PF00072 Response regulator receiver domain Thebr_1262 PF01339 CheB methylesterase Thebr_1264 PF10609 NUBPL iron-transfer P-loop NTPase Thebr_1265 PF00448 SRP54-type protein, GTPase domain Thebr_1266 PF00771 FHIPEP family Thebr_1267 PF01312 FlhB HrpN YscU SpaS Family Thebr_1268 PF01311 Bacterial export proteins, family 1 Thebr_1269 PF01313 Bacterial export proteins, family 3 Thebr_1270 PF00813 FliP family Thebr_1272 PF00072 Response regulator receiver domain Thebr_1273 PF04509 CheC-like family Thebr_1273 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thebr_1274 PF02154 Flagellar motor switch protein FliM Thebr_1274 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thebr_1276 PF06289 Flagellar and Swarming motility proteins Thebr_1277 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thebr_1277 PF07559 Flagellar basal body protein FlaE Thebr_1277 PF00460 Flagella basal body rod protein Thebr_1279 PF03963 Flagellar hook capping protein - N-terminal region Thebr_1283 PF18269 T3SS EscN ATPase C-terminal domain Thebr_1283 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thebr_1283 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thebr_1285 PF01706 FliG C-terminal domain Thebr_1285 PF14841 FliG middle domain Thebr_1285 PF14842 FliG N-terminal domain Thebr_1286 PF08345 Flagellar M-ring protein C-terminal Thebr_1286 PF01514 Secretory protein of YscJ/FliF family Thebr_1287 PF02049 Flagellar hook-basal body complex protein FliE Thebr_1288 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thebr_1288 PF00460 Flagella basal body rod protein Thebr_1289 PF00460 Flagella basal body rod protein Thebr_1290 PF06018 CodY GAF-like domain Thebr_1290 PF08222 CodY helix-turn-helix domain Thebr_1291 PF07724 AAA domain (Cdc48 subfamily) Thebr_1291 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_1291 PF10431 C-terminal, D2-small domain, of ClpB protein Thebr_1292 PF00227 Proteasome subunit Thebr_1293 PF01131 DNA topoisomerase Thebr_1293 PF01751 Toprim domain Thebr_1293 PF01396 Topoisomerase DNA binding C4 zinc finger Thebr_1294 PF17782 DprA winged helix domain Thebr_1294 PF02481 DNA recombination-mediator protein A Thebr_1295 PF01351 Ribonuclease HII Thebr_1296 PF02021 Uncharacterised protein family UPF0102 Thebr_1297 PF00579 tRNA synthetases class I (W and Y) Thebr_1298 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thebr_1298 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thebr_1299 PF01078 Magnesium chelatase, subunit ChlI Thebr_1299 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thebr_1300 PF01926 50S ribosome-binding GTPase Thebr_1301 PF01245 Ribosomal protein L19 Thebr_1302 PF01746 tRNA (Guanine-1)-methyltransferase Thebr_1303 PF05239 PRC-barrel domain Thebr_1303 PF01782 RimM N-terminal domain Thebr_1305 PF00886 Ribosomal protein S16 Thebr_1306 PF02978 Signal peptide binding domain Thebr_1306 PF02881 SRP54-type protein, helical bundle domain Thebr_1306 PF00448 SRP54-type protein, GTPase domain Thebr_1307 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Thebr_1308 PF00448 SRP54-type protein, GTPase domain Thebr_1308 PF02881 SRP54-type protein, helical bundle domain Thebr_1309 PF02463 RecF/RecN/SMC N terminal domain Thebr_1309 PF06470 SMC proteins Flexible Hinge Domain Thebr_1311 PF04232 Stage V sporulation protein S (SpoVS) Thebr_1313 PF00035 Double-stranded RNA binding motif Thebr_1313 PF14622 Ribonuclease-III-like Thebr_1314 PF02801 Beta-ketoacyl synthase, C-terminal domain Thebr_1314 PF00109 Beta-ketoacyl synthase, N-terminal domain Thebr_1315 PF00550 Phosphopantetheine attachment site Thebr_1317 PF00698 Acyl transferase domain Thebr_1318 PF03060 Nitronate monooxygenase Thebr_1319 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thebr_1319 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thebr_1320 PF02504 Fatty acid synthesis protein Thebr_1322 PF01783 Ribosomal L32p protein family Thebr_1323 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thebr_1324 PF00871 Acetokinase family Thebr_1325 PF01515 Phosphate acetyl/butaryl transferase Thebr_1326 PF05636 HIGH Nucleotidyl Transferase Thebr_1327 PF07670 Nucleoside recognition Thebr_1329 PF01467 Cytidylyltransferase-like Thebr_1331 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thebr_1332 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thebr_1333 PF02645 Uncharacterised protein, DegV family COG1307 Thebr_1334 PF00271 Helicase conserved C-terminal domain Thebr_1334 PF17191 RecG wedge domain Thebr_1334 PF00270 DEAD/DEAH box helicase Thebr_1335 PF13684 Dihydroxyacetone kinase family Thebr_1335 PF02734 DAK2 domain Thebr_1336 PF03780 Asp23 family, cell envelope-related function Thebr_1337 PF00830 Ribosomal L28 family Thebr_1340 PF00834 Ribulose-phosphate 3 epimerase family Thebr_1341 PF03193 RsgA GTPase Thebr_1341 PF16745 RsgA N-terminal domain Thebr_1342 PF00069 Protein kinase domain Thebr_1342 PF03793 PASTA domain Thebr_1344 PF04055 Radical SAM superfamily Thebr_1345 PF01029 NusB family Thebr_1345 PF01189 16S rRNA methyltransferase RsmB/F Thebr_1346 PF04298 Putative neutral zinc metallopeptidase Thebr_1348 PF02911 Formyl transferase, C-terminal domain Thebr_1348 PF00551 Formyl transferase Thebr_1349 PF01327 Polypeptide deformylase Thebr_1350 PF00271 Helicase conserved C-terminal domain Thebr_1350 PF17764 3′ DNA-binding domain (3′BD) Thebr_1350 PF18074 Primosomal protein N C-terminal domain Thebr_1350 PF04851 Type III restriction enzyme, res subunit Thebr_1350 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thebr_1351 PF02441 Flavoprotein Thebr_1351 PF04127 DNA / pantothenate metabolism flavoprotein Thebr_1352 PF01192 RNA polymerase Rpb6 Thebr_1353 PF00625 Guanylate kinase Thebr_1354 PF04025 Domain of unknown function (DUF370) Thebr_1355 PF03755 YicC-like family, N-terminal region Thebr_1355 PF08340 Domain of unknown function (DUF1732) Thebr_1356 PF01678 Diaminopimelate epimerase Thebr_1357 PF07690 Major Facilitator Superfamily Thebr_1361 PF09383 NIL domain Thebr_1361 PF00005 ABC transporter Thebr_1362 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1363 PF03180 NLPA lipoprotein Thebr_1365 PF01171 PP-loop family Thebr_1366 PF17785 PUA-like domain Thebr_1366 PF10672 S-adenosylmethionine-dependent methyltransferase Thebr_1367 PF01471 Putative peptidoglycan binding domain Thebr_1367 PF01510 N-acetylmuramoyl-L-alanine amidase Thebr_1368 PF00156 Phosphoribosyl transferase domain Thebr_1369 PF01180 Dihydroorotate dehydrogenase Thebr_1370 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thebr_1371 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Thebr_1372 PF01979 Amidohydrolase family Thebr_1373 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thebr_1373 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thebr_1374 PF00156 Phosphoribosyl transferase domain Thebr_1375 PF00586 AIR synthase related protein, N-terminal domain Thebr_1375 PF02769 AIR synthase related protein, C-terminal domain Thebr_1375 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thebr_1376 PF01479 S4 domain Thebr_1376 PF00849 RNA pseudouridylate synthase Thebr_1377 PF01252 Signal peptidase (SPase) II Thebr_1383 PF01668 SmpB protein Thebr_1384 PF00773 RNB domain Thebr_1384 PF08206 Ribonuclease B OB domain Thebr_1384 PF17876 Cold shock domain Thebr_1384 PF00575 S1 RNA binding domain Thebr_1386 PF02896 PEP-utilising enzyme, TIM barrel domain Thebr_1386 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thebr_1386 PF00391 PEP-utilising enzyme, mobile domain Thebr_1387 PF03618 Kinase/pyrophosphorylase Thebr_1388 PF08279 HTH domain Thebr_1388 PF00571 CBS domain Thebr_1389 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thebr_1389 PF03129 Anticodon binding domain Thebr_1391 PF11967 Recombination protein O N terminal Thebr_1391 PF02565 Recombination protein O C terminal Thebr_1392 PF01791 DeoC/LacD family aldolase Thebr_1393 PF01926 50S ribosome-binding GTPase Thebr_1393 PF07650 KH domain Thebr_1394 PF01219 Prokaryotic diacylglycerol kinase Thebr_1395 PF02130 Uncharacterized protein family UPF0054 Thebr_1396 PF01966 HD domain Thebr_1396 PF07698 7TM receptor with intracellular HD hydrolase Thebr_1396 PF07697 7TM-HD extracellular Thebr_1397 PF02562 PhoH-like protein Thebr_1398 PF06898 Putative stage IV sporulation protein YqfD Thebr_1399 PF07873 YabP family Thebr_1400 PF17763 Glutaminase/Asparaginase C-terminal domain Thebr_1400 PF00710 Asparaginase, N-terminal Thebr_1402 PF01165 Ribosomal protein S21 Thebr_1403 PF01230 HIT domain Thebr_1404 PF01938 TRAM domain Thebr_1404 PF04055 Radical SAM superfamily Thebr_1404 PF00919 Uncharacterized protein family UPF0004 Thebr_1406 PF00990 Diguanylate cyclase, GGDEF domain Thebr_1406 PF08448 PAS fold Thebr_1406 PF00563 EAL domain Thebr_1406 PF05231 MASE1 Thebr_1406 PF08447 PAS fold Thebr_1406 PF13426 PAS domain Thebr_1407 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thebr_1407 PF00672 HAMP domain Thebr_1407 PF12729 Four helix bundle sensory module for signal transduction Thebr_1410 PF01966 HD domain Thebr_1410 PF11871 Domain of unknown function (DUF3391) Thebr_1417 PF00005 ABC transporter Thebr_1417 PF00664 ABC transporter transmembrane region Thebr_1417 PF03412 Peptidase C39 family Thebr_1418 PF00005 ABC transporter Thebr_1418 PF12848 ABC transporter Thebr_1419 PF13936 Helix-turn-helix domain Thebr_1425 PF04452 RNA methyltransferase Thebr_1427 PF00226 DnaJ domain Thebr_1427 PF00684 DnaJ central domain Thebr_1427 PF01556 DnaJ C terminal domain Thebr_1428 PF00012 Hsp70 protein Thebr_1429 PF01025 GrpE Thebr_1430 PF01628 HrcA protein C terminal domain Thebr_1431 PF04055 Radical SAM superfamily Thebr_1431 PF06969 HemN C-terminal domain Thebr_1432 PF03144 Elongation factor Tu domain 2 Thebr_1432 PF06421 GTP-binding protein LepA C-terminus Thebr_1432 PF00009 Elongation factor Tu GTP binding domain Thebr_1432 PF14492 Elongation Factor G, domain II Thebr_1432 PF00679 Elongation factor G C-terminus Thebr_1437 PF03418 Germination protease Thebr_1439 PF01649 Ribosomal protein S20 Thebr_1442 PF00753 Metallo-beta-lactamase superfamily Thebr_1442 PF12706 Beta-lactamase superfamily domain Thebr_1443 PF13419 Haloacid dehalogenase-like hydrolase Thebr_1444 PF07155 ECF-type riboflavin transporter, S component Thebr_1448 PF01063 Amino-transferase class IV Thebr_1449 PF12838 4Fe-4S dicluster domain Thebr_1452 PF02796 Helix-turn-helix domain of resolvase Thebr_1452 PF00665 Integrase core domain Thebr_1454 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thebr_1455 PF04608 Phosphatidylglycerophosphatase A Thebr_1456 PF10531 SLBB domain Thebr_1457 PF00768 D-alanyl-D-alanine carboxypeptidase Thebr_1457 PF07943 Penicillin-binding protein 5, C-terminal domain Thebr_1458 PF00733 Asparagine synthase Thebr_1458 PF13537 Glutamine amidotransferase domain Thebr_1460 PF02558 Ketopantoate reductase PanE/ApbA Thebr_1460 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Thebr_1463 PF01966 HD domain Thebr_1464 PF01467 Cytidylyltransferase-like Thebr_1465 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_1466 PF01926 50S ribosome-binding GTPase Thebr_1466 PF01018 GTP1/OBG Thebr_1466 PF09269 Domain of unknown function (DUF1967) Thebr_1468 PF01016 Ribosomal L27 protein Thebr_1470 PF00829 Ribosomal prokaryotic L21 protein Thebr_1472 PF06177 QueT transporter Thebr_1473 PF14489 QueF-like protein Thebr_1474 PF10150 Ribonuclease E/G family Thebr_1474 PF00575 S1 RNA binding domain Thebr_1477 PF02163 Peptidase family M50 Thebr_1477 PF00571 CBS domain Thebr_1478 PF01476 LysM domain Thebr_1478 PF01551 Peptidase family M23 Thebr_1478 PF08525 Opacity-associated protein A N-terminal motif Thebr_1479 PF02142 MGS-like domain Thebr_1480 PF01098 Cell cycle protein Thebr_1481 PF03776 Septum formation topological specificity factor MinE Thebr_1482 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thebr_1483 PF03775 Septum formation inhibitor MinC, C-terminal domain Thebr_1484 PF03717 Penicillin-binding Protein dimerisation domain Thebr_1484 PF00905 Penicillin binding protein transpeptidase domain Thebr_1488 PF04002 RadC-like JAB domain Thebr_1489 PF02545 Maf-like protein Thebr_1491 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thebr_1491 PF00037 4Fe-4S binding domain Thebr_1491 PF02256 Iron hydrogenase small subunit Thebr_1491 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thebr_1492 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thebr_1492 PF00037 4Fe-4S binding domain Thebr_1492 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thebr_1494 PF00512 His Kinase A (phospho-acceptor) domain Thebr_1494 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thebr_1494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_1498 PF04060 Putative Fe-S cluster Thebr_1502 PF01464 Transglycosylase SLT domain Thebr_1504 PF00877 NlpC/P60 family Thebr_1504 PF01476 LysM domain Thebr_1507 PF01464 Transglycosylase SLT domain Thebr_1508 PF01121 Dephospho-CoA kinase Thebr_1509 PF00476 DNA polymerase family A Thebr_1509 PF01367 5'-3' exonuclease, C-terminal SAM fold Thebr_1509 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Thebr_1512 PF00704 Glycosyl hydrolases family 18 Thebr_1512 PF01476 LysM domain Thebr_1514 PF04260 Protein of unknown function (DUF436) Thebr_1523 PF00221 Aromatic amino acid lyase Thebr_1526 PF01476 LysM domain Thebr_1526 PF08525 Opacity-associated protein A N-terminal motif Thebr_1526 PF01551 Peptidase family M23 Thebr_1529 PF00155 Aminotransferase class I and II Thebr_1529 PF00392 Bacterial regulatory proteins, gntR family Thebr_1530 PF01979 Amidohydrolase family Thebr_1531 PF00072 Response regulator receiver domain Thebr_1532 PF00120 Glutamine synthetase, catalytic domain Thebr_1532 PF03951 Glutamine synthetase, beta-Grasp domain Thebr_1534 PF00664 ABC transporter transmembrane region Thebr_1534 PF00005 ABC transporter Thebr_1535 PF00005 ABC transporter Thebr_1535 PF00664 ABC transporter transmembrane region Thebr_1537 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thebr_1537 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thebr_1538 PF00701 Dihydrodipicolinate synthetase family Thebr_1539 PF05173 Dihydrodipicolinate reductase, C-terminus Thebr_1539 PF01113 Dihydrodipicolinate reductase, N-terminus Thebr_1540 PF14602 Hexapeptide repeat of succinyl-transferase Thebr_1540 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Thebr_1540 PF00132 Bacterial transferase hexapeptide (six repeats) Thebr_1541 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Thebr_1541 PF12557 Cob(I)alamin adenosyltransferase N terminal Thebr_1544 PF07486 Cell Wall Hydrolase Thebr_1544 PF01471 Putative peptidoglycan binding domain Thebr_1548 PF03633 Glycosyl hydrolase family 65, C-terminal domain Thebr_1548 PF03632 Glycosyl hydrolase family 65 central catalytic domain Thebr_1548 PF03636 Glycosyl hydrolase family 65, N-terminal domain Thebr_1550 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1551 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1552 PF00356 Bacterial regulatory proteins, lacI family Thebr_1553 PF13419 Haloacid dehalogenase-like hydrolase Thebr_1554 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1555 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1556 PF01547 Bacterial extracellular solute-binding protein Thebr_1557 PF03633 Glycosyl hydrolase family 65, C-terminal domain Thebr_1557 PF03632 Glycosyl hydrolase family 65 central catalytic domain Thebr_1557 PF03636 Glycosyl hydrolase family 65, N-terminal domain Thebr_1558 PF00356 Bacterial regulatory proteins, lacI family Thebr_1559 PF08331 Domain of unknown function (DUF1730) Thebr_1560 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thebr_1564 PF08245 Mur ligase middle domain Thebr_1564 PF02875 Mur ligase family, glutamate ligase domain Thebr_1566 PF00133 tRNA synthetases class I (I, L, M and V) Thebr_1566 PF10458 Valyl tRNA synthetase tRNA binding arm Thebr_1566 PF08264 Anticodon-binding domain of tRNA Thebr_1568 PF02632 BioY family Thebr_1570 PF10925 Protein of unknown function (DUF2680) Thebr_1571 PF00072 Response regulator receiver domain Thebr_1571 PF00486 Transcriptional regulatory protein, C terminal Thebr_1572 PF16736 Single Cache-like Thebr_1572 PF00512 His Kinase A (phospho-acceptor) domain Thebr_1572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_1572 PF00989 PAS fold Thebr_1573 PF01969 Protein of unknown function DUF111 Thebr_1574 PF01969 Protein of unknown function DUF111 Thebr_1575 PF00731 AIR carboxylase Thebr_1576 PF02540 NAD synthase Thebr_1577 PF01066 CDP-alcohol phosphatidyltransferase Thebr_1579 PF01569 PAP2 superfamily Thebr_1581 PF10997 Alternate to MurJ Thebr_1582 PF07690 Major Facilitator Superfamily Thebr_1583 PF00334 Nucleoside diphosphate kinase Thebr_1585 PF00690 Cation transporter/ATPase, N-terminus Thebr_1585 PF00689 Cation transporting ATPase, C-terminus Thebr_1588 PF03816 Cell envelope-related transcriptional attenuator domain Thebr_1590 PF13614 AAA domain Thebr_1591 PF13807 G-rich domain on putative tyrosine kinase Thebr_1591 PF02706 Chain length determinant protein Thebr_1592 PF00483 Nucleotidyl transferase Thebr_1593 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thebr_1593 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thebr_1593 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thebr_1593 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thebr_1594 PF00467 KOW motif Thebr_1594 PF02357 Transcription termination factor nusG Thebr_1595 PF01174 SNO glutamine amidotransferase family Thebr_1596 PF01680 SOR/SNZ family Thebr_1606 PF01566 Natural resistance-associated macrophage protein Thebr_1608 PF03030 Inorganic H+ pyrophosphatase Thebr_1612 PF00248 Aldo/keto reductase family Thebr_1613 PF12850 Calcineurin-like phosphoesterase superfamily domain Thebr_1614 PF04011 LemA family Thebr_1615 PF01435 Peptidase family M48 Thebr_1619 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Thebr_1623 PF07728 AAA domain (dynein-related subfamily) Thebr_1623 PF12102 Domain of unknown function (DUF3578) Thebr_1627 PF01139 tRNA-splicing ligase RtcB Thebr_1629 PF03030 Inorganic H+ pyrophosphatase Thebr_1631 PF13411 MerR HTH family regulatory protein Thebr_1637 PF00465 Iron-containing alcohol dehydrogenase Thebr_1638 PF00248 Aldo/keto reductase family Thebr_1655 PF01566 Natural resistance-associated macrophage protein Thebr_1656 PF12850 Calcineurin-like phosphoesterase superfamily domain Thebr_1657 PF03477 ATP cone domain Thebr_1665 PF00483 Nucleotidyl transferase Thebr_1665 PF01050 Mannose-6-phosphate isomerase Thebr_1666 PF02397 Bacterial sugar transferase Thebr_1667 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Thebr_1668 PF04321 RmlD substrate binding domain Thebr_1669 PF00483 Nucleotidyl transferase Thebr_1670 PF16363 GDP-mannose 4,6 dehydratase Thebr_1672 PF00535 Glycosyl transferase family 2 Thebr_1672 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Thebr_1673 PF00535 Glycosyl transferase family 2 Thebr_1674 PF00534 Glycosyl transferases group 1 Thebr_1674 PF13439 Glycosyltransferase Family 4 Thebr_1681 PF03448 MgtE intracellular N domain Thebr_1681 PF01769 Divalent cation transporter Thebr_1681 PF00571 CBS domain Thebr_1684 PF00005 ABC transporter Thebr_1685 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1686 PF02540 NAD synthase Thebr_1686 PF00795 Carbon-nitrogen hydrolase Thebr_1688 PF01926 50S ribosome-binding GTPase Thebr_1689 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_1689 PF05362 Lon protease (S16) C-terminal proteolytic domain Thebr_1689 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thebr_1690 PF07724 AAA domain (Cdc48 subfamily) Thebr_1690 PF06689 ClpX C4-type zinc finger Thebr_1690 PF10431 C-terminal, D2-small domain, of ClpB protein Thebr_1691 PF00574 Clp protease Thebr_1692 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thebr_1692 PF05697 Bacterial trigger factor protein (TF) Thebr_1692 PF05698 Bacterial trigger factor protein (TF) C-terminus Thebr_1694 PF02110 Hydroxyethylthiazole kinase family Thebr_1695 PF02581 Thiamine monophosphate synthase Thebr_1696 PF08543 Phosphomethylpyrimidine kinase Thebr_1699 PF00037 4Fe-4S binding domain Thebr_1699 PF13247 4Fe-4S dicluster domain Thebr_1700 PF01645 Conserved region in glutamate synthase Thebr_1700 PF13187 4Fe-4S dicluster domain Thebr_1701 PF00310 Glutamine amidotransferases class-II Thebr_1702 PF00117 Glutamine amidotransferase class-I Thebr_1702 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thebr_1704 PF00543 Nitrogen regulatory protein P-II Thebr_1705 PF00909 Ammonium Transporter Family Thebr_1706 PF12437 Glutamine synthetase type III N terminal Thebr_1706 PF18318 Glutamine synthetase C-terminal domain Thebr_1706 PF00120 Glutamine synthetase, catalytic domain Thebr_1708 PF06782 Uncharacterised protein family (UPF0236) Thebr_1715 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Thebr_1716 PF07005 Sugar-binding N-terminal domain Thebr_1716 PF17042 Nucleotide-binding C-terminal domain Thebr_1717 PF03812 2-keto-3-deoxygluconate permease Thebr_1718 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Thebr_1720 PF00158 Sigma-54 interaction domain Thebr_1720 PF13426 PAS domain Thebr_1720 PF02954 Bacterial regulatory protein, Fis family Thebr_1723 PF01725 Ham1 family Thebr_1724 PF01138 3' exoribonuclease family, domain 1 Thebr_1724 PF03725 3' exoribonuclease family, domain 2 Thebr_1726 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_1726 PF00005 ABC transporter Thebr_1727 PF00005 ABC transporter Thebr_1727 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_1728 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1728 PF12911 N-terminal TM domain of oligopeptide transport permease C Thebr_1729 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thebr_1732 PF02934 GatB/GatE catalytic domain Thebr_1732 PF02637 GatB domain Thebr_1733 PF01425 Amidase Thebr_1734 PF02686 Glu-tRNAGln amidotransferase C subunit Thebr_1735 PF12826 Helix-hairpin-helix motif Thebr_1735 PF00533 BRCA1 C Terminus (BRCT) domain Thebr_1735 PF01653 NAD-dependent DNA ligase adenylation domain Thebr_1735 PF03120 NAD-dependent DNA ligase OB-fold domain Thebr_1735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thebr_1736 PF13361 UvrD-like helicase C-terminal domain Thebr_1736 PF00580 UvrD/REP helicase N-terminal domain Thebr_1737 PF01371 Trp repressor protein Thebr_1738 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thebr_1739 PF02378 Phosphotransferase system, EIIC Thebr_1740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_1742 PF08279 HTH domain Thebr_1742 PF05043 Mga helix-turn-helix domain Thebr_1742 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_1742 PF00874 PRD domain Thebr_1742 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_1744 PF14667 Polysaccharide biosynthesis C-terminal domain Thebr_1744 PF01943 Polysaccharide biosynthesis protein Thebr_1745 PF01546 Peptidase family M20/M25/M40 Thebr_1745 PF07687 Peptidase dimerisation domain Thebr_1746 PF01177 Asp/Glu/Hydantoin racemase Thebr_1748 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thebr_1748 PF02843 Phosphoribosylglycinamide synthetase, C domain Thebr_1748 PF02844 Phosphoribosylglycinamide synthetase, N domain Thebr_1749 PF02142 MGS-like domain Thebr_1749 PF01808 AICARFT/IMPCHase bienzyme Thebr_1750 PF00551 Formyl transferase Thebr_1751 PF02769 AIR synthase related protein, C-terminal domain Thebr_1751 PF00586 AIR synthase related protein, N-terminal domain Thebr_1752 PF00156 Phosphoribosyl transferase domain Thebr_1753 PF00586 AIR synthase related protein, N-terminal domain Thebr_1753 PF02769 AIR synthase related protein, C-terminal domain Thebr_1753 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thebr_1755 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Thebr_1756 PF01259 SAICAR synthetase Thebr_1757 PF00731 AIR carboxylase Thebr_1758 PF00860 Permease family Thebr_1759 PF00117 Glutamine amidotransferase class-I Thebr_1759 PF00958 GMP synthase C terminal domain Thebr_1759 PF02540 NAD synthase Thebr_1760 PF00478 IMP dehydrogenase / GMP reductase domain Thebr_1760 PF00571 CBS domain Thebr_1761 PF00118 TCP-1/cpn60 chaperonin family Thebr_1762 PF00166 Chaperonin 10 Kd subunit Thebr_1768 PF00082 Subtilase family Thebr_1770 PF04474 Protein of unknown function (DUF554) Thebr_1773 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thebr_1773 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_1774 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thebr_1774 PF00175 Oxidoreductase NAD-binding domain Thebr_1778 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_1778 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Thebr_1778 PF17203 Single cache domain 3 Thebr_1779 PF04397 LytTr DNA-binding domain Thebr_1779 PF00072 Response regulator receiver domain Thebr_1781 PF02629 CoA binding domain Thebr_1781 PF06971 Putative DNA-binding protein N-terminus Thebr_1782 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thebr_1782 PF00691 OmpA family Thebr_1783 PF01618 MotA/TolQ/ExbB proton channel family Thebr_1786 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_1787 PF00814 Glycoprotease family Thebr_1789 PF00814 Glycoprotease family Thebr_1790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thebr_1791 PF12822 ECF transporter, substrate-specific component Thebr_1792 PF00696 Amino acid kinase family Thebr_1793 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thebr_1793 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thebr_1795 PF01979 Amidohydrolase family Thebr_1796 PF09335 SNARE associated Golgi protein Thebr_1798 PF09371 Tex-like protein N-terminal domain Thebr_1798 PF00575 S1 RNA binding domain Thebr_1798 PF17674 HHH domain Thebr_1798 PF16921 Tex protein YqgF-like domain Thebr_1800 PF01043 SecA preprotein cross-linking domain Thebr_1800 PF07517 SecA DEAD-like domain Thebr_1800 PF07516 SecA Wing and Scaffold domain Thebr_1800 PF02810 SEC-C motif Thebr_1803 PF08279 HTH domain Thebr_1803 PF02829 3H domain Thebr_1805 PF00072 Response regulator receiver domain Thebr_1807 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Thebr_1807 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thebr_1808 PF00005 ABC transporter Thebr_1809 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1810 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thebr_1811 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_1813 PF02743 Cache domain Thebr_1813 PF00672 HAMP domain Thebr_1813 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thebr_1815 PF02561 Flagellar protein FliS Thebr_1816 PF02465 Flagellar hook-associated protein 2 N-terminus Thebr_1816 PF07196 Flagellin hook IN motif Thebr_1816 PF07195 Flagellar hook-associated protein 2 C-terminus Thebr_1819 PF13537 Glutamine amidotransferase domain Thebr_1819 PF00733 Asparagine synthase Thebr_1820 PF01555 DNA methylase Thebr_1821 PF04556 DpnII restriction endonuclease Thebr_1822 PF02086 D12 class N6 adenine-specific DNA methyltransferase Thebr_1823 PF00154 recA bacterial DNA recombination protein Thebr_1823 PF03161 LAGLIDADG DNA endonuclease family Thebr_1824 PF00669 Bacterial flagellin N-terminal helical region Thebr_1824 PF00700 Bacterial flagellin C-terminal helical region Thebr_1825 PF02599 Global regulator protein family Thebr_1826 PF02623 FliW protein Thebr_1828 PF00700 Bacterial flagellin C-terminal helical region Thebr_1828 PF00669 Bacterial flagellin N-terminal helical region Thebr_1829 PF00460 Flagella basal body rod protein Thebr_1829 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thebr_1833 PF00156 Phosphoribosyl transferase domain Thebr_1834 PF13538 UvrD-like helicase C-terminal domain Thebr_1834 PF14490 Helix-hairpin-helix containing domain Thebr_1834 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Thebr_1835 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thebr_1835 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thebr_1835 PF02772 S-adenosylmethionine synthetase, central domain Thebr_1836 PF02915 Rubrerythrin Thebr_1840 PF00989 PAS fold Thebr_1840 PF00512 His Kinase A (phospho-acceptor) domain Thebr_1840 PF16736 Single Cache-like Thebr_1840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thebr_1841 PF00072 Response regulator receiver domain Thebr_1841 PF00486 Transcriptional regulatory protein, C terminal Thebr_1842 PF00356 Bacterial regulatory proteins, lacI family Thebr_1845 PF04239 Protein of unknown function (DUF421) Thebr_1848 PF00731 AIR carboxylase Thebr_1849 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Thebr_1849 PF02222 ATP-grasp domain Thebr_1853 PF08704 tRNA methyltransferase complex GCD14 subunit Thebr_1855 PF02548 Ketopantoate hydroxymethyltransferase Thebr_1856 PF02569 Pantoate-beta-alanine ligase Thebr_1857 PF02261 Aspartate decarboxylase Thebr_1860 PF01968 Hydantoinase/oxoprolinase Thebr_1860 PF05378 Hydantoinase/oxoprolinase N-terminal region Thebr_1865 PF00480 ROK family Thebr_1866 PF00330 Aconitase family (aconitate hydratase) Thebr_1867 PF00682 HMGL-like Thebr_1868 PF00874 PRD domain Thebr_1868 PF03123 CAT RNA binding domain Thebr_1869 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thebr_1870 PF00367 phosphotransferase system, EIIB Thebr_1870 PF02378 Phosphotransferase system, EIIC Thebr_1870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thebr_1872 PF00672 HAMP domain Thebr_1872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thebr_1872 PF02743 Cache domain Thebr_1873 PF00591 Glycosyl transferase family, a/b domain Thebr_1873 PF02885 Glycosyl transferase family, helical bundle domain Thebr_1873 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Thebr_1874 PF01676 Metalloenzyme superfamily Thebr_1875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thebr_1876 PF00392 Bacterial regulatory proteins, gntR family Thebr_1876 PF07702 UTRA domain Thebr_1880 PF02608 ABC transporter substrate-binding protein PnrA-like Thebr_1881 PF04961 Formiminotransferase-cyclodeaminase Thebr_1883 PF01979 Amidohydrolase family Thebr_1884 PF02971 Formiminotransferase domain Thebr_1884 PF07837 Formiminotransferase domain, N-terminal subdomain Thebr_1885 PF17391 Urocanase N-terminal domain Thebr_1885 PF01175 Urocanase Rossmann-like domain Thebr_1885 PF17392 Urocanase C-terminal domain Thebr_1886 PF02743 Cache domain Thebr_1886 PF00672 HAMP domain Thebr_1886 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thebr_1888 PF01966 HD domain Thebr_1889 PF13520 Amino acid permease Thebr_1890 PF10371 Domain of unknown function Thebr_1890 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thebr_1890 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thebr_1890 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thebr_1890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thebr_1902 PF00005 ABC transporter Thebr_1917 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thebr_1919 PF02796 Helix-turn-helix domain of resolvase Thebr_1919 PF00665 Integrase core domain Thebr_1923 PF05343 M42 glutamyl aminopeptidase Thebr_1931 PF00180 Isocitrate/isopropylmalate dehydrogenase Thebr_1932 PF00005 ABC transporter Thebr_1934 PF02553 Cobalt transport protein component CbiN Thebr_1935 PF01891 Cobalt uptake substrate-specific transmembrane region Thebr_1936 PF00202 Aminotransferase class-III Thebr_1937 PF00490 Delta-aminolevulinic acid dehydratase Thebr_1942 PF02654 Cobalamin-5-phosphate synthase Thebr_1943 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Thebr_1944 PF00155 Aminotransferase class I and II Thebr_1947 PF03186 CobD/Cbib protein Thebr_1948 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thebr_1949 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thebr_1949 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thebr_1950 PF00005 ABC transporter Thebr_1951 PF01032 FecCD transport family Thebr_1952 PF01497 Periplasmic binding protein Thebr_1955 PF02926 THUMP domain Thebr_1955 PF01170 Putative RNA methylase family UPF0020 Thebr_1958 PF01592 NifU-like N terminal domain Thebr_1959 PF00266 Aminotransferase class-V Thebr_1962 PF13187 4Fe-4S dicluster domain Thebr_1962 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thebr_1962 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thebr_1963 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thebr_1963 PF00175 Oxidoreductase NAD-binding domain Thebr_1964 PF17179 4Fe-4S dicluster domain Thebr_1966 PF04011 LemA family Thebr_1969 PF17863 AAA lid domain Thebr_1969 PF07726 ATPase family associated with various cellular activities (AAA) Thebr_1970 PF01475 Ferric uptake regulator family Thebr_1971 PF01297 Zinc-uptake complex component A periplasmic Thebr_1972 PF00005 ABC transporter Thebr_1973 PF00950 ABC 3 transport family Thebr_1975 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Thebr_1975 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thebr_1975 PF00703 Glycosyl hydrolases family 2 Thebr_1975 PF16355 Domain of unknown function (DUF4982) Thebr_1975 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Thebr_1976 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_1976 PF00005 ABC transporter Thebr_1977 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_1977 PF00005 ABC transporter Thebr_1978 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1978 PF12911 N-terminal TM domain of oligopeptide transport permease C Thebr_1979 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_1980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thebr_1981 PF00356 Bacterial regulatory proteins, lacI family Thebr_1983 PF01925 Sulfite exporter TauE/SafE Thebr_1984 PF01207 Dihydrouridine synthase (Dus) Thebr_1985 PF00149 Calcineurin-like phosphoesterase Thebr_1985 PF02872 5'-nucleotidase, C-terminal domain Thebr_1986 PF08125 Mannitol dehydrogenase C-terminal domain Thebr_1986 PF01232 Mannitol dehydrogenase Rossmann domain Thebr_1987 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_1988 PF05043 Mga helix-turn-helix domain Thebr_1988 PF00874 PRD domain Thebr_1988 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_1988 PF08279 HTH domain Thebr_1989 PF02378 Phosphotransferase system, EIIC Thebr_1989 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_1990 PF00232 Glycosyl hydrolase family 1 Thebr_1991 PF11975 Family 4 glycosyl hydrolase C-terminal domain Thebr_1991 PF02056 Family 4 glycosyl hydrolase Thebr_1992 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thebr_1993 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_1994 PF04794 YdjC-like protein Thebr_1995 PF02378 Phosphotransferase system, EIIC Thebr_1996 PF00158 Sigma-54 interaction domain Thebr_1996 PF00874 PRD domain Thebr_1996 PF03610 PTS system fructose IIA component Thebr_1999 PF04227 Indigoidine synthase A like protein Thebr_2000 PF00294 pfkB family carbohydrate kinase Thebr_2002 PF03591 AzlC protein Thebr_2003 PF09334 tRNA synthetases class I (M) Thebr_2003 PF08264 Anticodon-binding domain of tRNA Thebr_2003 PF13603 Leucyl-tRNA synthetase, Domain 2 Thebr_2003 PF00133 tRNA synthetases class I (I, L, M and V) Thebr_2005 PF03649 Uncharacterised protein family (UPF0014) Thebr_2006 PF00005 ABC transporter Thebr_2008 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thebr_2011 PF00440 Bacterial regulatory proteins, tetR family Thebr_2015 PF01022 Bacterial regulatory protein, arsR family Thebr_2017 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_2017 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_2017 PF01842 ACT domain Thebr_2018 PF01081 KDPG and KHG aldolase Thebr_2019 PF00294 pfkB family carbohydrate kinase Thebr_2020 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thebr_2021 PF01081 KDPG and KHG aldolase Thebr_2022 PF01614 Bacterial transcriptional regulator Thebr_2022 PF09339 IclR helix-turn-helix domain Thebr_2026 PF00912 Transglycosylase Thebr_2026 PF00905 Penicillin binding protein transpeptidase domain Thebr_2027 PF00465 Iron-containing alcohol dehydrogenase Thebr_2028 PF13580 SIS domain Thebr_2029 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thebr_2030 PF03611 PTS system sugar-specific permease component Thebr_2031 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_2032 PF00155 Aminotransferase class I and II Thebr_2034 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_2034 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thebr_2035 PF10437 Bacterial lipoate protein ligase C-terminus Thebr_2035 PF03099 Biotin/lipoate A/B protein ligase family Thebr_2036 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thebr_2036 PF01571 Aminomethyltransferase folate-binding domain Thebr_2037 PF01597 Glycine cleavage H-protein Thebr_2038 PF02347 Glycine cleavage system P-protein Thebr_2039 PF02347 Glycine cleavage system P-protein Thebr_2040 PF01950 Fructose-1,6-bisphosphatase Thebr_2044 PF01593 Flavin containing amine oxidoreductase Thebr_2046 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Thebr_2046 PF00056 lactate/malate dehydrogenase, NAD binding domain Thebr_2050 PF00534 Glycosyl transferases group 1 Thebr_2050 PF13439 Glycosyltransferase Family 4 Thebr_2051 PF18085 Maltokinase N-terminal cap domain Thebr_2051 PF01636 Phosphotransferase enzyme family Thebr_2055 PF10417 C-terminal domain of 1-Cys peroxiredoxin Thebr_2055 PF00578 AhpC/TSA family Thebr_2056 PF01212 Beta-eliminating lyase Thebr_2057 PF13175 AAA ATPase domain Thebr_2058 PF12320 Type 5 capsule protein repressor C-terminal domain Thebr_2058 PF00149 Calcineurin-like phosphoesterase Thebr_2059 PF13361 UvrD-like helicase C-terminal domain Thebr_2059 PF00580 UvrD/REP helicase N-terminal domain Thebr_2059 PF12705 PD-(D/E)XK nuclease superfamily Thebr_2060 PF12705 PD-(D/E)XK nuclease superfamily Thebr_2061 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thebr_2062 PF00005 ABC transporter Thebr_2062 PF12704 MacB-like periplasmic core domain Thebr_2062 PF02687 FtsX-like permease family Thebr_2063 PF00005 ABC transporter Thebr_2064 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thebr_2065 PF01554 MatE Thebr_2066 PF11798 IMS family HHH motif Thebr_2066 PF11799 impB/mucB/samB family C-terminal domain Thebr_2066 PF00817 impB/mucB/samB family Thebr_2067 PF00588 SpoU rRNA Methylase family Thebr_2068 PF01402 Ribbon-helix-helix protein, copG family Thebr_2068 PF08753 NikR C terminal nickel binding domain Thebr_2069 PF01891 Cobalt uptake substrate-specific transmembrane region Thebr_2069 PF13190 PDGLE domain Thebr_2070 PF01891 Cobalt uptake substrate-specific transmembrane region Thebr_2070 PF13190 PDGLE domain Thebr_2071 PF02361 Cobalt transport protein Thebr_2072 PF00005 ABC transporter Thebr_2073 PF02421 Ferrous iron transport protein B Thebr_2073 PF17910 FeoB cytosolic helical domain Thebr_2073 PF07664 Ferrous iron transport protein B C terminus Thebr_2073 PF04023 FeoA domain Thebr_2073 PF07670 Nucleoside recognition Thebr_2075 PF01037 Lrp/AsnC ligand binding domain Thebr_2076 PF00155 Aminotransferase class I and II Thebr_2077 PF01979 Amidohydrolase family Thebr_2081 PF00872 Transposase, Mutator family Thebr_2083 PF13407 Periplasmic binding protein domain Thebr_2084 PF02653 Branched-chain amino acid transport system / permease component Thebr_2085 PF00005 ABC transporter Thebr_2086 PF05025 RbsD / FucU transport protein family Thebr_2087 PF00294 pfkB family carbohydrate kinase Thebr_2088 PF00356 Bacterial regulatory proteins, lacI family Thebr_2089 PF13936 Helix-turn-helix domain Thebr_2097 PF01047 MarR family Thebr_2097 PF00480 ROK family Thebr_2099 PF01915 Glycosyl hydrolase family 3 C-terminal domain Thebr_2099 PF00933 Glycosyl hydrolase family 3 N terminal domain Thebr_2099 PF14310 Fibronectin type III-like domain Thebr_2100 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_2101 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_2102 PF01547 Bacterial extracellular solute-binding protein Thebr_2103 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thebr_2103 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thebr_2104 PF01261 Xylose isomerase-like TIM barrel Thebr_2106 PF02080 TrkA-C domain Thebr_2106 PF02254 TrkA-N domain Thebr_2107 PF02386 Cation transport protein Thebr_2108 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thebr_2108 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thebr_2109 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_2109 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_2110 PF01081 KDPG and KHG aldolase Thebr_2111 PF01842 ACT domain Thebr_2111 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_2111 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_2112 PF03830 PTS system sorbose subfamily IIB component Thebr_2113 PF03613 PTS system mannose/fructose/sorbose family IID component Thebr_2115 PF03610 PTS system fructose IIA component Thebr_2116 PF00158 Sigma-54 interaction domain Thebr_2116 PF03610 PTS system fructose IIA component Thebr_2116 PF00874 PRD domain Thebr_2117 PF07690 Major Facilitator Superfamily Thebr_2118 PF01081 KDPG and KHG aldolase Thebr_2119 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_2119 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_2120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Thebr_2120 PF13378 Enolase C-terminal domain-like Thebr_2121 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Thebr_2123 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thebr_2123 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thebr_2123 PF01842 ACT domain Thebr_2126 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thebr_2127 PF00874 PRD domain Thebr_2127 PF00158 Sigma-54 interaction domain Thebr_2127 PF03610 PTS system fructose IIA component Thebr_2133 PF03023 Lipid II flippase MurJ Thebr_2134 PF07977 FabA-like domain Thebr_2138 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thebr_2138 PF00460 Flagella basal body rod protein Thebr_2139 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thebr_2139 PF00460 Flagella basal body rod protein Thebr_2141 PF12116 Stage III sporulation protein D Thebr_2143 PF08486 Stage II sporulation protein Thebr_2145 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thebr_2145 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thebr_2146 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thebr_2151 PF02502 Ribose/Galactose Isomerase Thebr_2152 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thebr_2153 PF03481 Putative GTP-binding controlling metal-binding Thebr_2153 PF01300 Telomere recombination Thebr_2156 PF00472 RF-1 domain Thebr_2156 PF03462 PCRF domain Thebr_2157 PF17827 PrmC N-terminal domain Thebr_2157 PF05175 Methyltransferase small domain Thebr_2158 PF07136 Protein of unknown function (DUF1385) Thebr_2159 PF00265 Thymidine kinase Thebr_2160 PF01197 Ribosomal protein L31 Thebr_2161 PF07498 Rho termination factor, N-terminal domain Thebr_2161 PF07497 Rho termination factor, RNA-binding domain Thebr_2161 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thebr_2162 PF01116 Fructose-bisphosphate aldolase class-II Thebr_2163 PF00486 Transcriptional regulatory protein, C terminal Thebr_2163 PF00072 Response regulator receiver domain Thebr_2165 PF04060 Putative Fe-S cluster Thebr_2165 PF00037 4Fe-4S binding domain Thebr_2165 PF13187 4Fe-4S dicluster domain Thebr_2166 PF02508 Rnf-Nqr subunit, membrane protein Thebr_2167 PF02508 Rnf-Nqr subunit, membrane protein Thebr_2168 PF04205 FMN-binding domain Thebr_2169 PF03116 NQR2, RnfD, RnfE family Thebr_2170 PF13375 RnfC Barrel sandwich hybrid domain Thebr_2170 PF10531 SLBB domain Thebr_2170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thebr_2170 PF13237 4Fe-4S dicluster domain Thebr_2172 PF17862 AAA+ lid domain Thebr_2172 PF01434 Peptidase family M41 Thebr_2172 PF00004 ATPase family associated with various cellular activities (AAA) Thebr_2172 PF06480 FtsH Extracellular Thebr_2175 PF01883 Iron-sulfur cluster assembly protein Thebr_2175 PF10609 NUBPL iron-transfer P-loop NTPase Thebr_2176 PF04542 Sigma-70 region 2 Thebr_2181 PF00398 Ribosomal RNA adenine dimethylase Thebr_2182 PF07501 G5 domain Thebr_2182 PF06725 3D domain Thebr_2182 PF03990 G5-linked-Ubiquitin-like domain Thebr_2183 PF01026 TatD related DNase Thebr_2184 PF09334 tRNA synthetases class I (M) Thebr_2184 PF01588 Putative tRNA binding domain Thebr_2184 PF08264 Anticodon-binding domain of tRNA Thebr_2185 PF12627 Probable RNA and SrmB- binding site of polymerase A Thebr_2185 PF01743 Poly A polymerase head domain Thebr_2185 PF01966 HD domain Thebr_2186 PF07670 Nucleoside recognition Thebr_2187 PF07670 Nucleoside recognition Thebr_2188 PF18277 AbrB C-terminal domain Thebr_2188 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thebr_2189 PF01545 Cation efflux family Thebr_2189 PF16916 Dimerisation domain of Zinc Transporter Thebr_2190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thebr_2191 PF05175 Methyltransferase small domain Thebr_2193 PF04468 PSP1 C-terminal conserved region Thebr_2194 PF09115 DNA polymerase III, delta subunit, C terminal Thebr_2196 PF06153 Cyclic-di-AMP receptor Thebr_2197 PF02223 Thymidylate kinase Thebr_2198 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thebr_2198 PF01276 Orn/Lys/Arg decarboxylase, major domain Thebr_2199 PF10764 Inhibitor of sigma-G Gin Thebr_2200 PF13302 Acetyltransferase (GNAT) domain Thebr_2200 PF03352 Methyladenine glycosylase Thebr_2200 PF00117 Glutamine amidotransferase class-I Thebr_2200 PF00958 GMP synthase C terminal domain Thebr_2200 PF13673 Acetyltransferase (GNAT) domain Thebr_2201 PF00480 ROK family Thebr_2202 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_2203 PF04143 Sulphur transport Thebr_2205 PF04143 Sulphur transport Thebr_2206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thebr_2206 PF03466 LysR substrate binding domain Thebr_2208 PF01177 Asp/Glu/Hydantoin racemase Thebr_2209 PF05378 Hydantoinase/oxoprolinase N-terminal region Thebr_2209 PF01968 Hydantoinase/oxoprolinase Thebr_2215 PF03167 Uracil DNA glycosylase superfamily Thebr_2217 PF05681 Fumarate hydratase (Fumerase) Thebr_2218 PF01171 PP-loop family Thebr_2219 PF02903 Alpha amylase, N-terminal ig-like domain Thebr_2219 PF00128 Alpha amylase, catalytic domain Thebr_2222 PF07478 D-ala D-ala ligase C-terminus Thebr_2222 PF01820 D-ala D-ala ligase N-terminus Thebr_2225 PF00483 Nucleotidyl transferase Thebr_2226 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thebr_2227 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thebr_2230 PF00005 ABC transporter Thebr_2230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_2231 PF00005 ABC transporter Thebr_2231 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thebr_2233 PF00528 Binding-protein-dependent transport system inner membrane component Thebr_2234 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thebr_2235 PF00356 Bacterial regulatory proteins, lacI family Thebr_2236 PF01479 S4 domain Thebr_2236 PF00849 RNA pseudouridylate synthase Thebr_2241 PF01966 HD domain Thebr_2242 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thebr_2243 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thebr_2244 PF13662 Toprim domain Thebr_2244 PF00633 Helix-hairpin-helix motif Thebr_2244 PF02132 RecR protein Thebr_2245 PF02575 YbaB/EbfC DNA-binding family Thebr_2246 PF12169 DNA polymerase III subunits gamma and tau domain III Thebr_2247 PF01966 HD domain Thebr_2248 PF14437 MafB19-like deaminase Thebr_2254 PF01471 Putative peptidoglycan binding domain Thebr_2254 PF07486 Cell Wall Hydrolase Thebr_2265 PF00437 Type II/IV secretion system protein Thebr_2270 PF01551 Peptidase family M23 Thebr_2270 PF04225 Opacity-associated protein A LysM-like domain Thebr_2287 PF01381 Helix-turn-helix Thebr_2290 PF00589 Phage integrase family Thebr_2290 PF14659 Phage integrase, N-terminal SAM-like domain Thebr_2291 PF00326 Prolyl oligopeptidase family Thebr_2292 PF00709 Adenylosuccinate synthetase Thebr_2294 PF02743 Cache domain Thebr_2294 PF00672 HAMP domain Thebr_2294 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thebr_2296 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thebr_2296 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thebr_2297 PF08439 Oligopeptidase F Thebr_2297 PF01432 Peptidase family M3 Thebr_2299 PF02417 Chromate transporter Thebr_2301 PF01813 ATP synthase subunit D Thebr_2302 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thebr_2302 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thebr_2303 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thebr_2303 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thebr_2303 PF16886 ATPsynthase alpha/beta subunit N-term extension Thebr_2304 PF01990 ATP synthase (F/14-kDa) subunit Thebr_2305 PF01992 ATP synthase (C/AC39) subunit Thebr_2306 PF01991 ATP synthase (E/31 kDa) subunit Thebr_2307 PF00137 ATP synthase subunit C Thebr_2308 PF01496 V-type ATPase 116kDa subunit family Thebr_2310 PF00860 Permease family Thebr_2312 PF13545 Crp-like helix-turn-helix domain Thebr_2312 PF00027 Cyclic nucleotide-binding domain Thebr_2313 PF00772 DnaB-like helicase N terminal domain Thebr_2313 PF03796 DnaB-like helicase C terminal domain Thebr_2314 PF01281 Ribosomal protein L9, N-terminal domain Thebr_2314 PF03948 Ribosomal protein L9, C-terminal domain Thebr_2315 PF01368 DHH family Thebr_2315 PF02272 DHHA1 domain Thebr_2318 PF01084 Ribosomal protein S18 Thebr_2319 PF00436 Single-strand binding protein family Thebr_2320 PF01250 Ribosomal protein S6 Thebr_2321 PF06107 Bacterial protein of unknown function (DUF951) Thebr_2322 PF00924 Mechanosensitive ion channel Thebr_2323 PF06866 Protein of unknown function (DUF1256) Thebr_2324 PF08245 Mur ligase middle domain Thebr_2324 PF08443 RimK-like ATP-grasp domain Thebr_2324 PF02875 Mur ligase family, glutamate ligase domain Thebr_2325 PF03575 Peptidase family S51 Thebr_2326 PF00781 Diacylglycerol kinase catalytic domain Thebr_2328 PF00266 Aminotransferase class-V Thebr_2329 PF02195 ParB-like nuclease domain Thebr_2329 PF17762 HTH domain found in ParB protein Thebr_2330 PF13614 AAA domain Thebr_2333 PF02527 rRNA small subunit methyltransferase G Thebr_2334 PF13932 GidA associated domain Thebr_2334 PF01134 Glucose inhibited division protein A Thebr_2335 PF10396 GTP-binding protein TrmE N-terminus Thebr_2335 PF12631 MnmE helical domain Thebr_2335 PF01926 50S ribosome-binding GTPase Thebr_2336 PF14804 Jag N-terminus Thebr_2336 PF01424 R3H domain Thebr_2337 PF02096 60Kd inner membrane protein Thebr_2338 PF01809 Putative membrane protein insertion efficiency factor Thebr_2339 PF00825 Ribonuclease P Thebr_2340 PF00468 Ribosomal protein L34