Thebr_0001 SM00382 ATPases associated with a variety of cellular activities Thebr_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Thebr_0002 SM00480 DNA polymerase III beta subunit Thebr_0003 SM00363 S4 RNA-binding domain Thebr_0010 SM00387 Histidine kinase-like ATPases Thebr_0010 SM00433 TopoisomeraseII Thebr_0011 SM00434 DNA Topoisomerase IV Thebr_0014 SM00881 CoA binding domain Thebr_0018 SM01329 Thebr_0018 Thebr_0031 SM00155 Phospholipase D. Active site motifs. Thebr_0033 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0034 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0043 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_0061 SM00382 ATPases associated with a variety of cellular activities Thebr_0066 SM00858 Thebr_0066 Thebr_0077 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0081 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_0094 SM00400 zinc finger Thebr_0102 SM00849 Metallo-beta-lactamase superfamily Thebr_0106 SM00382 ATPases associated with a variety of cellular activities Thebr_0108 SM00257 Lysin motif Thebr_0108 SM01208 Thebr_0108 Thebr_0111 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thebr_0121 SM00883 Chaperonin 10 Kd subunit Thebr_0122 SM00382 ATPases associated with a variety of cellular activities Thebr_0131 SM00487 DEAD-like helicases superfamily Thebr_0143 SM00849 Metallo-beta-lactamase superfamily Thebr_0149 SM00287 Bacterial SH3 domain homologues Thebr_0149 SM00635 Bacterial Ig-like domain 2 Thebr_0156 SM00420 helix_turn_helix, Deoxyribose operon repressor Thebr_0156 SM01134 Thebr_0156 Thebr_0163 SM00354 helix_turn _helix lactose operon repressor Thebr_0168 SM01400 Thebr_0168 Thebr_0170 SM00448 cheY-homologous receiver domain Thebr_0170 SM00862 Transcriptional regulatory protein, C terminal Thebr_0171 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_0171 SM00387 Histidine kinase-like ATPases Thebr_0171 SM00388 His Kinase A (phosphoacceptor) domain Thebr_0172 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thebr_0175 SM00487 DEAD-like helicases superfamily Thebr_0175 SM00490 helicase superfamily c-terminal domain Thebr_0175 SM00982 Thebr_0175 Thebr_0175 SM01058 CarD-like/TRCF domain Thebr_0177 SM00966 SpoVT / AbrB like domain Thebr_0181 SM00257 Lysin motif Thebr_0183 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thebr_0183 SM00895 Thebr_0183 Thebr_0195 SM00836 DALR anticodon binding domain Thebr_0195 SM01016 Arginyl tRNA synthetase N terminal dom Thebr_0196 SM00534 ATPase domain of DNA mismatch repair MUTS family Thebr_0199 SM00382 ATPases associated with a variety of cellular activities Thebr_0202 SM01321 Thebr_0202 Thebr_0204 SM00382 ATPases associated with a variety of cellular activities Thebr_0205 SM00382 ATPases associated with a variety of cellular activities Thebr_0215 SM00347 helix_turn_helix multiple antibiotic resistance protein Thebr_0216 SM00382 ATPases associated with a variety of cellular activities Thebr_0217 SM00382 ATPases associated with a variety of cellular activities Thebr_0219 SM00014 Acid phosphatase homologues Thebr_0220 SM00831 Cation transporter/ATPase, N-terminus Thebr_0221 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_0221 SM00481 DNA polymerase alpha chain like domain Thebr_0221 SM00483 DNA polymerase X family Thebr_0224 SM00829 Enoylreductase Thebr_0227 SM00091 PAS domain Thebr_0228 SM00331 Sigma factor PP2C-like phosphatases Thebr_0229 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thebr_0233 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Thebr_0234 SM00851 MGS-like domain Thebr_0234 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thebr_0237 SM00831 Cation transporter/ATPase, N-terminus Thebr_0239 SM00855 Phosphoglycerate mutase family Thebr_0248 SM00900 Thebr_0248 Thebr_0252 SM00173 Ras subfamily of RAS small GTPases Thebr_0254 SM00028 Tetratricopeptide repeats Thebr_0254 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0256 SM00411 bacterial (prokaryotic) histone like domain Thebr_0257 SM00363 S4 RNA-binding domain Thebr_0262 SM00116 Domain in cystathionine beta-synthase and other proteins. Thebr_0262 SM01131 Thebr_0262 Thebr_0265 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_0280 SM00448 cheY-homologous receiver domain Thebr_0280 SM00862 Transcriptional regulatory protein, C terminal Thebr_0281 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_0281 SM00387 Histidine kinase-like ATPases Thebr_0281 SM00388 His Kinase A (phosphoacceptor) domain Thebr_0285 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thebr_0292 SM00052 Putative diguanylate phosphodiesterase Thebr_0293 SM00646 Thebr_0293 Thebr_0297 SM00829 Enoylreductase Thebr_0298 SM00890 Domain of unknown function Thebr_0302 SM00382 ATPases associated with a variety of cellular activities Thebr_0307 SM00331 Sigma factor PP2C-like phosphatases Thebr_0308 SM00977 TilS substrate C-terminal domain Thebr_0310 SM00382 ATPases associated with a variety of cellular activities Thebr_0311 SM00091 PAS domain Thebr_0311 SM00387 Histidine kinase-like ATPases Thebr_0311 SM00388 His Kinase A (phosphoacceptor) domain Thebr_0340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thebr_0340 SM00267 diguanylate cyclase Thebr_0346 SM00838 Elongation factor G C-terminus Thebr_0346 SM00889 Elongation factor G, domain IV Thebr_0347 SM00919 Malic enzyme, NAD binding domain Thebr_0347 SM01274 Thebr_0347 Thebr_0352 SM00382 ATPases associated with a variety of cellular activities Thebr_0352 SM01086 C-terminal, D2-small domain, of ClpB protein Thebr_0353 SM00382 ATPases associated with a variety of cellular activities Thebr_0355 SM00670 Large family of predicted nucleotide-binding domains Thebr_0363 SM00840 Thebr_0363 Thebr_0365 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thebr_0371 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thebr_0371 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thebr_0372 SM00649 Ribosomal protein L11/L12 Thebr_0377 SM00663 RNA polymerase I subunit A N-terminus Thebr_0381 SM00838 Elongation factor G C-terminus Thebr_0381 SM00889 Elongation factor G, domain IV Thebr_0383 SM01403 Thebr_0383 Thebr_0387 SM01382 Thebr_0387 Thebr_0387 SM01383 Thebr_0387 Thebr_0390 SM00322 K homology RNA-binding domain Thebr_0394 SM01374 Thebr_0394 Thebr_0395 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thebr_0407 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_0411 SM00363 S4 RNA-binding domain Thebr_0411 SM01390 Thebr_0411 Thebr_0412 SM00662 RNA polymerases D Thebr_0414 SM00382 ATPases associated with a variety of cellular activities Thebr_0415 SM00382 ATPases associated with a variety of cellular activities Thebr_0420 SM00028 Tetratricopeptide repeats Thebr_0420 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0422 SM00382 ATPases associated with a variety of cellular activities Thebr_0425 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_0433 SM00382 ATPases associated with a variety of cellular activities Thebr_0453 SM01091 Transporter associated domain Thebr_0459 SM00257 Lysin motif Thebr_0460 SM00646 Thebr_0460 Thebr_0473 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thebr_0482 SM00563 Phosphate acyltransferases Thebr_0488 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Thebr_0489 SM00257 Lysin motif Thebr_0493 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0499 SM01005 Alanine racemase, C-terminal domain Thebr_0505 SM00861 Transketolase, pyrimidine binding domain Thebr_0518 SM01068 Putative carbohydrate binding domain Thebr_0520 SM00382 ATPases associated with a variety of cellular activities Thebr_0525 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Thebr_0555 SM00091 PAS domain Thebr_0555 SM00382 ATPases associated with a variety of cellular activities Thebr_0557 SM01120 Thebr_0557 Thebr_0559 SM00849 Metallo-beta-lactamase superfamily Thebr_0565 SM00382 ATPases associated with a variety of cellular activities Thebr_0568 SM00842 Cell division protein FtsA Thebr_0576 SM00382 ATPases associated with a variety of cellular activities Thebr_0578 SM00382 ATPases associated with a variety of cellular activities Thebr_0581 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thebr_0581 SM00245 tail specific protease Thebr_0582 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thebr_0584 SM00487 DEAD-like helicases superfamily Thebr_0584 SM00490 helicase superfamily c-terminal domain Thebr_0585 SM00382 ATPases associated with a variety of cellular activities Thebr_0586 SM00240 Forkhead associated domain Thebr_0589 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_0589 SM00465 GIY-YIG type nucleases (URI domain) Thebr_0592 SM00481 DNA polymerase alpha chain like domain Thebr_0603 SM00422 helix_turn_helix, mercury resistance Thebr_0603 SM00857 Resolvase, N terminal domain Thebr_0605 SM00354 helix_turn _helix lactose operon repressor Thebr_0613 SM00420 helix_turn_helix, Deoxyribose operon repressor Thebr_0613 SM01134 Thebr_0613 Thebr_0615 SM01350 Thebr_0615 Thebr_0623 SM00419 helix_turn_helix, cAMP Regulatory protein Thebr_0630 SM00872 Alpha mannosidase, middle domain Thebr_0635 SM00342 helix_turn_helix, arabinose operon control protein Thebr_0638 SM00382 ATPases associated with a variety of cellular activities Thebr_0646 SM00640 Glycosyl hydrolases family 32 Thebr_0648 SM00354 helix_turn _helix lactose operon repressor Thebr_0659 SM00849 Metallo-beta-lactamase superfamily Thebr_0661 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_0661 SM00876 Biotin and Thiamin Synthesis associated domain Thebr_0665 SM00382 ATPases associated with a variety of cellular activities Thebr_0683 SM00481 DNA polymerase alpha chain like domain Thebr_0686 SM00632 Thebr_0686 Thebr_0686 SM00642 Alpha-amylase domain Thebr_0690 SM00632 Thebr_0690 Thebr_0690 SM00642 Alpha-amylase domain Thebr_0690 SM01065 Starch binding domain Thebr_0694 SM00642 Alpha-amylase domain Thebr_0698 SM00116 Domain in cystathionine beta-synthase and other proteins. Thebr_0699 SM00481 DNA polymerase alpha chain like domain Thebr_0708 SM00917 LeuA allosteric (dimerisation) domain Thebr_0717 SM01018 B12 binding domain Thebr_0729 SM01207 Thebr_0729 Thebr_0730 SM00910 Thebr_0730 Thebr_0731 SM00382 ATPases associated with a variety of cellular activities Thebr_0737 SM00382 ATPases associated with a variety of cellular activities Thebr_0740 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_0746 SM00478 endonuclease III Thebr_0746 SM00525 Thebr_0746 Thebr_0747 SM01208 Thebr_0747 Thebr_0753 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thebr_0757 SM01192 Thebr_0757 Thebr_0757 SM01193 Thebr_0757 Thebr_0759 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_0760 SM00400 zinc finger Thebr_0760 SM00493 Thebr_0760 Thebr_0771 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thebr_0774 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thebr_0780 SM00357 Cold shock protein domain Thebr_0783 SM00267 diguanylate cyclase Thebr_0783 SM00448 cheY-homologous receiver domain Thebr_0787 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thebr_0793 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thebr_0795 SM00873 B3/4 domain Thebr_0795 SM00874 tRNA synthetase B5 domain Thebr_0795 SM00896 Ferredoxin-fold anticodon binding domain Thebr_0798 SM00463 Small MutS-related domain Thebr_0798 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thebr_0798 SM00534 ATPase domain of DNA mismatch repair MUTS family Thebr_0801 SM00387 Histidine kinase-like ATPases Thebr_0802 SM00421 helix_turn_helix, Lux Regulon Thebr_0802 SM00448 cheY-homologous receiver domain Thebr_0809 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_0810 SM00091 PAS domain Thebr_0810 SM00382 ATPases associated with a variety of cellular activities Thebr_0813 SM00861 Transketolase, pyrimidine binding domain Thebr_0820 SM00981 Thebr_0820 Thebr_0829 SM00740 Thebr_0829 Thebr_0840 SM00842 Cell division protein FtsA Thebr_0841 SM00864 Tubulin/FtsZ family, GTPase domain Thebr_0841 SM00865 Tubulin/FtsZ family, C-terminal domain Thebr_0847 SM00448 cheY-homologous receiver domain Thebr_0847 SM00862 Transcriptional regulatory protein, C terminal Thebr_0848 SM00091 PAS domain Thebr_0848 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_0848 SM00387 Histidine kinase-like ATPases Thebr_0848 SM00388 His Kinase A (phosphoacceptor) domain Thebr_0852 SM00382 ATPases associated with a variety of cellular activities Thebr_0862 SM01207 Thebr_0862 Thebr_0872 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thebr_0880 SM00382 ATPases associated with a variety of cellular activities Thebr_0881 SM00852 Probable molybdopterin binding domain Thebr_0882 SM00852 Probable molybdopterin binding domain Thebr_0883 SM00852 Probable molybdopterin binding domain Thebr_0884 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_0888 SM00460 Transglutaminase/protease-like homologues Thebr_0896 SM00363 S4 RNA-binding domain Thebr_0901 SM01007 Class II Aldolase and Adducin N-terminal domain Thebr_0902 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thebr_0902 SM00866 Thebr_0902 Thebr_0905 SM00382 ATPases associated with a variety of cellular activities Thebr_0911 SM00854 Bacterial capsule synthesis protein PGA_cap Thebr_0926 SM00460 Transglutaminase/protease-like homologues Thebr_0929 SM00382 ATPases associated with a variety of cellular activities Thebr_0949 SM00487 DEAD-like helicases superfamily Thebr_0949 SM00490 helicase superfamily c-terminal domain Thebr_0953 SM00487 DEAD-like helicases superfamily Thebr_0953 SM00490 helicase superfamily c-terminal domain Thebr_0961 SM00382 ATPases associated with a variety of cellular activities Thebr_0962 SM00530 Helix-turn-helix XRE-family like proteins Thebr_0966 SM00382 ATPases associated with a variety of cellular activities Thebr_0972 SM00382 ATPases associated with a variety of cellular activities Thebr_0978 SM00382 ATPases associated with a variety of cellular activities Thebr_0979 SM00382 ATPases associated with a variety of cellular activities Thebr_0983 SM00419 helix_turn_helix, cAMP Regulatory protein Thebr_0989 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_0992 SM00506 Appr-1"-p processing enzyme Thebr_0998 SM00849 Metallo-beta-lactamase superfamily Thebr_0999 SM00226 Low molecular weight phosphatase family Thebr_1001 SM01350 Thebr_1001 Thebr_1014 SM00257 Lysin motif Thebr_1031 SM00881 CoA binding domain Thebr_1036 SM00260 Two component signalling adaptor domain Thebr_1039 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_1040 SM00382 ATPases associated with a variety of cellular activities Thebr_1044 SM01323 Thebr_1044 Thebr_1054 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1054 SM00954 Region found in RelA / SpoT proteins Thebr_1056 SM00849 Metallo-beta-lactamase superfamily Thebr_1058 SM00382 ATPases associated with a variety of cellular activities Thebr_1060 SM00347 helix_turn_helix multiple antibiotic resistance protein Thebr_1079 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thebr_1081 SM00732 Likely ribonuclease with RNase H fold. Thebr_1084 SM00849 Metallo-beta-lactamase superfamily Thebr_1094 SM00382 ATPases associated with a variety of cellular activities Thebr_1095 SM00382 ATPases associated with a variety of cellular activities Thebr_1104 SM00842 Cell division protein FtsA Thebr_1108 SM00518 AP endonuclease family 2 Thebr_1109 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thebr_1113 SM00841 Elongation factor P, C-terminal Thebr_1113 SM01185 Thebr_1113 Thebr_1115 SM00382 ATPases associated with a variety of cellular activities Thebr_1130 SM00861 Transketolase, pyrimidine binding domain Thebr_1131 SM00363 S4 RNA-binding domain Thebr_1136 SM00448 cheY-homologous receiver domain Thebr_1147 SM00936 Penicillin-binding protein 5, C-terminal domain Thebr_1149 SM00387 Histidine kinase-like ATPases Thebr_1166 SM00936 Penicillin-binding protein 5, C-terminal domain Thebr_1169 SM00363 S4 RNA-binding domain Thebr_1174 SM00257 Lysin motif Thebr_1182 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thebr_1187 SM00796 Allophanate hydrolase subunit 1 Thebr_1188 SM00797 Allophanate hydrolase subunit 2 Thebr_1192 SM00855 Phosphoglycerate mutase family Thebr_1197 SM00563 Phosphate acyltransferases Thebr_1199 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_1201 SM00138 Methyltransferase, chemotaxis proteins Thebr_1202 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1203 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thebr_1203 SM00534 ATPase domain of DNA mismatch repair MUTS family Thebr_1204 SM00853 MutL C terminal dimerisation domain Thebr_1204 SM01340 Thebr_1204 Thebr_1211 SM00382 ATPases associated with a variety of cellular activities Thebr_1212 SM00998 Adenylosuccinate lyase C-terminus Thebr_1214 SM00481 DNA polymerase alpha chain like domain Thebr_1217 SM00322 K homology RNA-binding domain Thebr_1217 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1220 SM00382 ATPases associated with a variety of cellular activities Thebr_1221 SM00852 Probable molybdopterin binding domain Thebr_1223 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1224 SM00382 ATPases associated with a variety of cellular activities Thebr_1224 SM00843 Thebr_1224 Thebr_1232 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_1232 SM00322 K homology RNA-binding domain Thebr_1233 SM01387 Thebr_1233 Thebr_1234 SM00904 Riboflavin kinase Thebr_1241 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_1243 SM00479 Thebr_1243 Thebr_1243 SM00481 DNA polymerase alpha chain like domain Thebr_1246 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thebr_1260 SM00260 Two component signalling adaptor domain Thebr_1261 SM00073 Histidine Phosphotransfer domain Thebr_1261 SM00260 Two component signalling adaptor domain Thebr_1261 SM00387 Histidine kinase-like ATPases Thebr_1261 SM01231 Thebr_1261 Thebr_1265 SM00382 ATPases associated with a variety of cellular activities Thebr_1265 SM00962 SRP54-type protein, GTPase domain Thebr_1272 SM00448 cheY-homologous receiver domain Thebr_1283 SM00382 ATPases associated with a variety of cellular activities Thebr_1291 SM00382 ATPases associated with a variety of cellular activities Thebr_1291 SM01086 C-terminal, D2-small domain, of ClpB protein Thebr_1293 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Thebr_1293 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Thebr_1293 SM00493 Thebr_1293 Thebr_1299 SM00382 ATPases associated with a variety of cellular activities Thebr_1306 SM00382 ATPases associated with a variety of cellular activities Thebr_1306 SM00962 SRP54-type protein, GTPase domain Thebr_1306 SM00963 SRP54-type protein, helical bundle domain Thebr_1308 SM00382 ATPases associated with a variety of cellular activities Thebr_1308 SM00962 SRP54-type protein, GTPase domain Thebr_1308 SM00963 SRP54-type protein, helical bundle domain Thebr_1309 SM00968 SMC proteins Flexible Hinge Domain Thebr_1312 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1313 SM00358 Double-stranded RNA binding motif Thebr_1313 SM00535 Ribonuclease III family Thebr_1314 SM00825 Beta-ketoacyl synthase Thebr_1315 SM00823 Phosphopantetheine attachment site Thebr_1316 SM00822 Thebr_1316 Thebr_1317 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thebr_1334 SM00487 DEAD-like helicases superfamily Thebr_1334 SM00490 helicase superfamily c-terminal domain Thebr_1335 SM01120 Thebr_1335 Thebr_1335 SM01121 Thebr_1335 Thebr_1339 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Thebr_1342 SM00220 Serine/Threonine protein kinases, catalytic domain Thebr_1342 SM00740 Thebr_1342 Thebr_1343 SM00331 Sigma factor PP2C-like phosphatases Thebr_1343 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thebr_1350 SM00487 DEAD-like helicases superfamily Thebr_1350 SM00490 helicase superfamily c-terminal domain Thebr_1352 SM01409 Thebr_1352 Thebr_1353 SM00072 Guanylate kinase homologues. Thebr_1361 SM00382 ATPases associated with a variety of cellular activities Thebr_1361 SM00930 Thebr_1361 Thebr_1366 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thebr_1371 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Thebr_1376 SM00363 S4 RNA-binding domain Thebr_1379 SM00028 Tetratricopeptide repeats Thebr_1384 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_1384 SM00357 Cold shock protein domain Thebr_1384 SM00955 Thebr_1384 Thebr_1385 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1388 SM00116 Domain in cystathionine beta-synthase and other proteins. Thebr_1392 SM01133 Thebr_1392 Thebr_1394 SM00014 Acid phosphatase homologues Thebr_1396 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1400 SM00870 Thebr_1400 Thebr_1404 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1406 SM00091 PAS domain Thebr_1406 SM00267 diguanylate cyclase Thebr_1407 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thebr_1410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1417 SM00382 ATPases associated with a variety of cellular activities Thebr_1418 SM00382 ATPases associated with a variety of cellular activities Thebr_1427 SM00271 DnaJ molecular chaperone homology domain Thebr_1431 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1432 SM00838 Elongation factor G C-terminus Thebr_1441 SM00849 Metallo-beta-lactamase superfamily Thebr_1442 SM00849 Metallo-beta-lactamase superfamily Thebr_1453 SM00382 ATPases associated with a variety of cellular activities Thebr_1456 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_1457 SM00936 Penicillin-binding protein 5, C-terminal domain Thebr_1463 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1474 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_1476 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1479 SM00851 MGS-like domain Thebr_1491 SM00902 Iron hydrogenase small subunit Thebr_1491 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thebr_1492 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thebr_1494 SM00387 Histidine kinase-like ATPases Thebr_1496 SM00481 DNA polymerase alpha chain like domain Thebr_1503 SM00838 Elongation factor G C-terminus Thebr_1504 SM00287 Bacterial SH3 domain homologues Thebr_1509 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Thebr_1509 SM00475 5'-3' exonuclease Thebr_1509 SM00482 DNA polymerase A domain Thebr_1512 SM00636 Thebr_1512 Thebr_1529 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thebr_1531 SM00448 cheY-homologous receiver domain Thebr_1531 SM01012 Thebr_1531 Thebr_1532 SM01230 Thebr_1532 Thebr_1534 SM00382 ATPases associated with a variety of cellular activities Thebr_1535 SM00382 ATPases associated with a variety of cellular activities Thebr_1537 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thebr_1538 SM01130 Thebr_1538 Thebr_1544 SM00257 Lysin motif Thebr_1552 SM00354 helix_turn _helix lactose operon repressor Thebr_1558 SM00354 helix_turn _helix lactose operon repressor Thebr_1571 SM00448 cheY-homologous receiver domain Thebr_1571 SM00862 Transcriptional regulatory protein, C terminal Thebr_1572 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_1572 SM00387 Histidine kinase-like ATPases Thebr_1572 SM00388 His Kinase A (phosphoacceptor) domain Thebr_1575 SM01001 AIR carboxylase Thebr_1579 SM00014 Acid phosphatase homologues Thebr_1583 SM00562 Thebr_1583 Thebr_1585 SM00831 Cation transporter/ATPase, N-terminus Thebr_1594 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thebr_1594 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thebr_1623 SM00382 ATPases associated with a variety of cellular activities Thebr_1631 SM00422 helix_turn_helix, mercury resistance Thebr_1653 SM00670 Large family of predicted nucleotide-binding domains Thebr_1681 SM00116 Domain in cystathionine beta-synthase and other proteins. Thebr_1681 SM00924 MgtE intracellular N domain Thebr_1684 SM00382 ATPases associated with a variety of cellular activities Thebr_1689 SM00382 ATPases associated with a variety of cellular activities Thebr_1689 SM00464 Found in ATP-dependent protease La (LON) Thebr_1690 SM00382 ATPases associated with a variety of cellular activities Thebr_1690 SM00994 ClpX C4-type zinc finger Thebr_1690 SM01086 C-terminal, D2-small domain, of ClpB protein Thebr_1704 SM00938 Nitrogen regulatory protein P-II Thebr_1706 SM01230 Thebr_1706 Thebr_1719 SM00858 Thebr_1719 Thebr_1720 SM00091 PAS domain Thebr_1720 SM00382 ATPases associated with a variety of cellular activities Thebr_1726 SM00382 ATPases associated with a variety of cellular activities Thebr_1727 SM00382 ATPases associated with a variety of cellular activities Thebr_1732 SM00845 GatB domain Thebr_1735 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_1735 SM00292 breast cancer carboxy-terminal domain Thebr_1735 SM00532 Ligase N family Thebr_1743 SM00729 Elongator protein 3, MiaB family, Radical SAM Thebr_1743 SM00876 Biotin and Thiamin Synthesis associated domain Thebr_1748 SM01209 Thebr_1748 Thebr_1748 SM01210 Thebr_1748 Thebr_1749 SM00798 AICARFT/IMPCHase bienzyme Thebr_1749 SM00851 MGS-like domain Thebr_1754 SM01211 Thebr_1754 Thebr_1757 SM01001 AIR carboxylase Thebr_1760 SM00116 Domain in cystathionine beta-synthase and other proteins. Thebr_1760 SM01240 Thebr_1760 Thebr_1762 SM00883 Chaperonin 10 Kd subunit Thebr_1771 SM00478 endonuclease III Thebr_1777 SM00793 Accessory gene regulator B Thebr_1778 SM00387 Histidine kinase-like ATPases Thebr_1779 SM00448 cheY-homologous receiver domain Thebr_1779 SM00850 LytTr DNA-binding domain Thebr_1781 SM00881 CoA binding domain Thebr_1798 SM00316 Ribosomal protein S1-like RNA-binding domain Thebr_1798 SM00732 Likely ribonuclease with RNase H fold. Thebr_1800 SM00957 SecA DEAD-like domain Thebr_1800 SM00958 SecA preprotein cross-linking domain Thebr_1805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1808 SM00382 ATPases associated with a variety of cellular activities Thebr_1810 SM00062 Bacterial periplasmic substrate-binding proteins Thebr_1810 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Thebr_1813 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thebr_1813 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_1834 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_1834 SM00382 ATPases associated with a variety of cellular activities Thebr_1839 SM00909 Sporulation and spore germination Thebr_1840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_1840 SM00387 Histidine kinase-like ATPases Thebr_1840 SM00388 His Kinase A (phosphoacceptor) domain Thebr_1841 SM00448 cheY-homologous receiver domain Thebr_1841 SM00862 Transcriptional regulatory protein, C terminal Thebr_1842 SM00354 helix_turn _helix lactose operon repressor Thebr_1848 SM01001 AIR carboxylase Thebr_1868 SM01061 CAT RNA binding domain Thebr_1872 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thebr_1873 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Thebr_1876 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thebr_1876 SM00866 Thebr_1876 Thebr_1879 SM00382 ATPases associated with a variety of cellular activities Thebr_1884 SM01221 Thebr_1884 Thebr_1884 SM01222 Thebr_1884 Thebr_1886 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thebr_1886 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_1888 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_1890 SM00890 Domain of unknown function Thebr_1900 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thebr_1902 SM00382 ATPases associated with a variety of cellular activities Thebr_1918 SM00382 ATPases associated with a variety of cellular activities Thebr_1931 SM01329 Thebr_1931 Thebr_1932 SM00382 ATPases associated with a variety of cellular activities Thebr_1937 SM01004 Delta-aminolevulinic acid dehydratase Thebr_1950 SM00382 ATPases associated with a variety of cellular activities Thebr_1955 SM00981 Thebr_1955 Thebr_1969 SM00382 ATPases associated with a variety of cellular activities Thebr_1972 SM00382 ATPases associated with a variety of cellular activities Thebr_1976 SM00382 ATPases associated with a variety of cellular activities Thebr_1977 SM00382 ATPases associated with a variety of cellular activities Thebr_1981 SM00354 helix_turn _helix lactose operon repressor Thebr_1985 SM00287 Bacterial SH3 domain homologues Thebr_1985 SM00854 Bacterial capsule synthesis protein PGA_cap Thebr_1996 SM00382 ATPases associated with a variety of cellular activities Thebr_2006 SM00382 ATPases associated with a variety of cellular activities Thebr_2015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thebr_2022 SM00346 helix_turn_helix isocitrate lyase regulation Thebr_2063 SM00382 ATPases associated with a variety of cellular activities Thebr_2072 SM00382 ATPases associated with a variety of cellular activities Thebr_2074 SM00899 Thebr_2074 Thebr_2075 SM00344 helix_turn_helix ASNC type Thebr_2085 SM00382 ATPases associated with a variety of cellular activities Thebr_2088 SM00354 helix_turn _helix lactose operon repressor Thebr_2099 SM01217 Thebr_2099 Thebr_2108 SM01350 Thebr_2108 Thebr_2116 SM00382 ATPases associated with a variety of cellular activities Thebr_2120 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Thebr_2122 SM00858 Thebr_2122 Thebr_2127 SM00382 ATPases associated with a variety of cellular activities Thebr_2145 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Thebr_2145 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Thebr_2152 SM00226 Low molecular weight phosphatase family Thebr_2156 SM00937 Thebr_2156 Thebr_2161 SM00357 Cold shock protein domain Thebr_2161 SM00382 ATPases associated with a variety of cellular activities Thebr_2161 SM00959 Rho termination factor, N-terminal domain Thebr_2168 SM00900 Thebr_2168 Thebr_2172 SM00382 ATPases associated with a variety of cellular activities Thebr_2181 SM00650 Ribosomal RNA adenine dimethylases Thebr_2182 SM01208 Thebr_2182 Thebr_2188 SM00966 SpoVT / AbrB like domain Thebr_2212 SM00382 ATPases associated with a variety of cellular activities Thebr_2215 SM00986 Uracil DNA glycosylase superfamily Thebr_2215 SM00987 UreE urease accessory protein, C-terminal domain Thebr_2219 SM00060 Fibronectin type 3 domain Thebr_2219 SM00287 Bacterial SH3 domain homologues Thebr_2219 SM00632 Thebr_2219 Thebr_2219 SM00642 Alpha-amylase domain Thebr_2219 SM01065 Starch binding domain Thebr_2230 SM00382 ATPases associated with a variety of cellular activities Thebr_2231 SM00382 ATPases associated with a variety of cellular activities Thebr_2235 SM00354 helix_turn _helix lactose operon repressor Thebr_2236 SM00363 S4 RNA-binding domain Thebr_2241 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_2244 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thebr_2244 SM00493 Thebr_2244 Thebr_2246 SM00382 ATPases associated with a variety of cellular activities Thebr_2247 SM00091 PAS domain Thebr_2247 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_2247 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thebr_2256 SM00530 Helix-turn-helix XRE-family like proteins Thebr_2267 SM00858 Thebr_2267 Thebr_2286 SM00530 Helix-turn-helix XRE-family like proteins Thebr_2287 SM00530 Helix-turn-helix XRE-family like proteins Thebr_2289 SM00155 Phospholipase D. Active site motifs. Thebr_2292 SM00788 Adenylosuccinate synthetase Thebr_2294 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thebr_2294 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thebr_2303 SM00382 ATPases associated with a variety of cellular activities Thebr_2312 SM00100 Cyclic nucleotide-monophosphate binding domain Thebr_2312 SM00419 helix_turn_helix, cAMP Regulatory protein Thebr_2313 SM00382 ATPases associated with a variety of cellular activities Thebr_2326 SM00046 Diacylglycerol kinase catalytic domain (presumed) Thebr_2329 SM00470 ParB-like nuclease domain Thebr_2331 SM00470 ParB-like nuclease domain Thebr_2334 SM01228 Thebr_2334 Thebr_2336 SM00393 Putative single-stranded nucleic acids-binding domain Thebr_2336 SM01245 Thebr_2336 Thebr_2338 SM01234 Thebr_2338