locus-tag class description Tmath_0001 PF00308 Bacterial dnaA protein Tmath_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tmath_0001 PF11638 DnaA N-terminal domain Tmath_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tmath_0002 PF02767 DNA polymerase III beta subunit, central domain Tmath_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tmath_0004 PF02463 RecF/RecN/SMC N terminal domain Tmath_0006 PF16338 Domain of unknown function (DUF4968) Tmath_0006 PF17137 Domain of unknown function (DUF5110) Tmath_0006 PF13802 Galactose mutarotase-like Tmath_0006 PF01055 Glycosyl hydrolases family 31 Tmath_0007 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tmath_0008 PF08245 Mur ligase middle domain Tmath_0008 PF08353 Domain of unknown function (DUF1727) Tmath_0009 PF00204 DNA gyrase B Tmath_0009 PF00986 DNA gyrase B subunit, carboxyl terminus Tmath_0009 PF01751 Toprim domain Tmath_0009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0010 PF00521 DNA gyrase/topoisomerase IV, subunit A Tmath_0010 PF03989 DNA gyrase C-terminal domain, beta-propeller Tmath_0014 PF06782 Uncharacterised protein family (UPF0236) Tmath_0019 PF00665 Integrase core domain Tmath_0019 PF02796 Helix-turn-helix domain of resolvase Tmath_0021 PF09827 CRISPR associated protein Cas2 Tmath_0022 PF01867 CRISPR associated protein Cas1 Tmath_0024 PF00270 DEAD/DEAH box helicase Tmath_0024 PF18019 HD domain Tmath_0024 PF00271 Helicase conserved C-terminal domain Tmath_0027 PF09706 CRISPR-associated protein (Cas_CXXC_CXXC) Tmath_0029 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tmath_0030 PF01842 ACT domain Tmath_0030 PF10369 Small subunit of acetolactate synthase Tmath_0031 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Tmath_0031 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tmath_0032 PF00682 HMGL-like Tmath_0033 PF00330 Aconitase family (aconitate hydratase) Tmath_0034 PF00694 Aconitase C-terminal domain Tmath_0035 PF00180 Isocitrate/isopropylmalate dehydrogenase Tmath_0036 PF00920 Dehydratase family Tmath_0037 PF00205 Thiamine pyrophosphate enzyme, central domain Tmath_0037 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_0037 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tmath_0038 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tmath_0038 PF01872 RibD C-terminal domain Tmath_0039 PF00677 Lumazine binding domain Tmath_0040 PF00925 GTP cyclohydrolase II Tmath_0040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tmath_0041 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tmath_0042 PF01594 AI-2E family transporter Tmath_0044 PF10502 Signal peptidase, peptidase S26 Tmath_0045 PF02403 Seryl-tRNA synthetase N-terminal domain Tmath_0045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_0046 PF03816 Cell envelope-related transcriptional attenuator domain Tmath_0047 PF03699 Uncharacterised protein family (UPF0182) Tmath_0048 PF14659 Phage integrase, N-terminal SAM-like domain Tmath_0048 PF00589 Phage integrase family Tmath_0051 PF01381 Helix-turn-helix Tmath_0052 PF01381 Helix-turn-helix Tmath_0061 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_0062 PF00437 Type II/IV secretion system protein Tmath_0070 PF00072 Response regulator receiver domain Tmath_0084 PF08525 Opacity-associated protein A N-terminal motif Tmath_0084 PF01551 Peptidase family M23 Tmath_0084 PF01476 LysM domain Tmath_0087 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_0087 PF00306 ATP synthase alpha/beta chain, C terminal domain Tmath_0087 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0092 PF08453 Peptidase family M9 N-terminal Tmath_0092 PF01752 Collagenase Tmath_0092 PF18496 Collagenase G catalytic helper subdomain Tmath_0096 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Tmath_0098 PF14437 MafB19-like deaminase Tmath_0099 PF01966 HD domain Tmath_0100 PF12169 DNA polymerase III subunits gamma and tau domain III Tmath_0101 PF02575 YbaB/EbfC DNA-binding family Tmath_0102 PF13662 Toprim domain Tmath_0102 PF02132 RecR protein Tmath_0102 PF00633 Helix-hairpin-helix motif Tmath_0103 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Tmath_0104 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Tmath_0105 PF01966 HD domain Tmath_0110 PF01479 S4 domain Tmath_0110 PF00849 RNA pseudouridylate synthase Tmath_0112 PF04041 beta-1,4-mannooligosaccharide phosphorylase Tmath_0113 PF04041 beta-1,4-mannooligosaccharide phosphorylase Tmath_0114 PF00483 Nucleotidyl transferase Tmath_0117 PF01820 D-ala D-ala ligase N-terminus Tmath_0117 PF07478 D-ala D-ala ligase C-terminus Tmath_0119 PF08361 MAATS-type transcriptional repressor, C-terminal region Tmath_0119 PF00440 Bacterial regulatory proteins, tetR family Tmath_0121 PF00686 Starch binding domain Tmath_0121 PF02903 Alpha amylase, N-terminal ig-like domain Tmath_0121 PF00128 Alpha amylase, catalytic domain Tmath_0123 PF05681 Fumarate hydratase (Fumerase) Tmath_0125 PF03167 Uracil DNA glycosylase superfamily Tmath_0131 PF01968 Hydantoinase/oxoprolinase Tmath_0131 PF05378 Hydantoinase/oxoprolinase N-terminal region Tmath_0132 PF01177 Asp/Glu/Hydantoin racemase Tmath_0134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tmath_0134 PF03466 LysR substrate binding domain Tmath_0135 PF04143 Sulphur transport Tmath_0137 PF04143 Sulphur transport Tmath_0138 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0139 PF00480 ROK family Tmath_0140 PF00958 GMP synthase C terminal domain Tmath_0140 PF00117 Glutamine amidotransferase class-I Tmath_0140 PF03352 Methyladenine glycosylase Tmath_0140 PF13302 Acetyltransferase (GNAT) domain Tmath_0140 PF13673 Acetyltransferase (GNAT) domain Tmath_0141 PF10764 Inhibitor of sigma-G Gin Tmath_0142 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tmath_0142 PF01276 Orn/Lys/Arg decarboxylase, major domain Tmath_0143 PF02223 Thymidylate kinase Tmath_0144 PF06153 Cyclic-di-AMP receptor Tmath_0146 PF09115 DNA polymerase III, delta subunit, C terminal Tmath_0147 PF04468 PSP1 C-terminal conserved region Tmath_0149 PF05175 Methyltransferase small domain Tmath_0150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0151 PF01545 Cation efflux family Tmath_0151 PF16916 Dimerisation domain of Zinc Transporter Tmath_0152 PF18277 AbrB C-terminal domain Tmath_0152 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Tmath_0153 PF07670 Nucleoside recognition Tmath_0154 PF07670 Nucleoside recognition Tmath_0155 PF12627 Probable RNA and SrmB- binding site of polymerase A Tmath_0155 PF01966 HD domain Tmath_0155 PF01743 Poly A polymerase head domain Tmath_0156 PF08264 Anticodon-binding domain of tRNA Tmath_0156 PF01588 Putative tRNA binding domain Tmath_0156 PF09334 tRNA synthetases class I (M) Tmath_0157 PF01026 TatD related DNase Tmath_0158 PF07501 G5 domain Tmath_0158 PF03990 G5-linked-Ubiquitin-like domain Tmath_0158 PF06725 3D domain Tmath_0159 PF00398 Ribosomal RNA adenine dimethylase Tmath_0165 PF01883 Iron-sulfur cluster assembly protein Tmath_0165 PF10609 NUBPL iron-transfer P-loop NTPase Tmath_0168 PF01434 Peptidase family M41 Tmath_0168 PF06480 FtsH Extracellular Tmath_0168 PF17862 AAA+ lid domain Tmath_0168 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_0169 PF10531 SLBB domain Tmath_0169 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tmath_0169 PF13375 RnfC Barrel sandwich hybrid domain Tmath_0169 PF13237 4Fe-4S dicluster domain Tmath_0170 PF03116 NQR2, RnfD, RnfE family Tmath_0171 PF04205 FMN-binding domain Tmath_0172 PF02508 Rnf-Nqr subunit, membrane protein Tmath_0173 PF02508 Rnf-Nqr subunit, membrane protein Tmath_0174 PF13187 4Fe-4S dicluster domain Tmath_0174 PF00037 4Fe-4S binding domain Tmath_0174 PF04060 Putative Fe-S cluster Tmath_0177 PF01116 Fructose-bisphosphate aldolase class-II Tmath_0178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0178 PF07497 Rho termination factor, RNA-binding domain Tmath_0178 PF07498 Rho termination factor, N-terminal domain Tmath_0179 PF01197 Ribosomal protein L31 Tmath_0180 PF00265 Thymidine kinase Tmath_0181 PF07136 Protein of unknown function (DUF1385) Tmath_0182 PF13847 Methyltransferase domain Tmath_0182 PF17827 PrmC N-terminal domain Tmath_0183 PF00472 RF-1 domain Tmath_0183 PF03462 PCRF domain Tmath_0184 PF02535 ZIP Zinc transporter Tmath_0185 PF01300 Telomere recombination Tmath_0185 PF03481 Putative GTP-binding controlling metal-binding Tmath_0186 PF02502 Ribose/Galactose Isomerase Tmath_0189 PF00953 Glycosyl transferase family 4 Tmath_0190 PF02350 UDP-N-acetylglucosamine 2-epimerase Tmath_0193 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_0194 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Tmath_0194 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Tmath_0196 PF08486 Stage II sporulation protein Tmath_0198 PF12116 Stage III sporulation protein D Tmath_0200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_0200 PF00460 Flagella basal body rod protein Tmath_0201 PF00460 Flagella basal body rod protein Tmath_0201 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_0203 PF07977 FabA-like domain Tmath_0204 PF03023 Lipid II flippase MurJ Tmath_0210 PF00158 Sigma-54 interaction domain Tmath_0210 PF00874 PRD domain Tmath_0210 PF03610 PTS system fructose IIA component Tmath_0212 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0213 PF03611 PTS system sugar-specific permease component Tmath_0214 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0214 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0216 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Tmath_0217 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Tmath_0217 PF13378 Enolase C-terminal domain-like Tmath_0218 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0218 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0218 PF01842 ACT domain Tmath_0219 PF01081 KDPG and KHG aldolase Tmath_0221 PF03610 PTS system fructose IIA component Tmath_0221 PF00158 Sigma-54 interaction domain Tmath_0221 PF00874 PRD domain Tmath_0222 PF03610 PTS system fructose IIA component Tmath_0224 PF03613 PTS system mannose/fructose/sorbose family IID component Tmath_0225 PF03830 PTS system sorbose subfamily IIB component Tmath_0226 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0226 PF01842 ACT domain Tmath_0226 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0227 PF01081 KDPG and KHG aldolase Tmath_0228 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0228 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0229 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_0229 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tmath_0230 PF02386 Cation transport protein Tmath_0231 PF02254 TrkA-N domain Tmath_0231 PF02080 TrkA-C domain Tmath_0233 PF01261 Xylose isomerase-like TIM barrel Tmath_0234 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_0234 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_0235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_0235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_0237 PF02614 Glucuronate isomerase Tmath_0238 PF01081 KDPG and KHG aldolase Tmath_0239 PF08125 Mannitol dehydrogenase C-terminal domain Tmath_0239 PF01232 Mannitol dehydrogenase Rossmann domain Tmath_0240 PF00294 pfkB family carbohydrate kinase Tmath_0241 PF03786 D-mannonate dehydratase (UxuA) Tmath_0242 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0243 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0246 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tmath_0246 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tmath_0246 PF16355 Domain of unknown function (DUF4982) Tmath_0246 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Tmath_0246 PF00703 Glycosyl hydrolases family 2 Tmath_0247 PF00331 Glycosyl hydrolase family 10 Tmath_0248 PF07488 Glycosyl hydrolase family 67 middle domain Tmath_0248 PF03648 Glycosyl hydrolase family 67 N-terminus Tmath_0248 PF07477 Glycosyl hydrolase family 67 C-terminus Tmath_0249 PF03512 Glycosyl hydrolase family 52 Tmath_0250 PF05448 Acetyl xylan esterase (AXE1) Tmath_0251 PF06452 Carbohydrate family 9 binding domain-like Tmath_0251 PF02018 Carbohydrate binding domain Tmath_0251 PF00331 Glycosyl hydrolase family 10 Tmath_0251 PF00395 S-layer homology domain Tmath_0255 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0256 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0257 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tmath_0257 PF14310 Fibronectin type III-like domain Tmath_0257 PF00933 Glycosyl hydrolase family 3 N terminal domain Tmath_0258 PF01047 MarR family Tmath_0258 PF00480 ROK family Tmath_0260 PF00356 Bacterial regulatory proteins, lacI family Tmath_0261 PF00294 pfkB family carbohydrate kinase Tmath_0262 PF05025 RbsD / FucU transport protein family Tmath_0263 PF00005 ABC transporter Tmath_0264 PF02653 Branched-chain amino acid transport system / permease component Tmath_0265 PF13407 Periplasmic binding protein domain Tmath_0266 PF01380 SIS domain Tmath_0266 PF01418 Helix-turn-helix domain, rpiR family Tmath_0267 PF13580 SIS domain Tmath_0269 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0270 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0271 PF17912 MalK OB fold domain Tmath_0271 PF00005 ABC transporter Tmath_0271 PF03459 TOBE domain Tmath_0273 PF00144 Beta-lactamase Tmath_0274 PF07075 Protein of unknown function (DUF1343) Tmath_0275 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tmath_0275 PF00933 Glycosyl hydrolase family 3 N terminal domain Tmath_0276 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_0277 PF03702 Anhydro-N-acetylmuramic acid kinase Tmath_0278 PF00583 Acetyltransferase (GNAT) family Tmath_0279 PF02585 GlcNAc-PI de-N-acetylase Tmath_0281 PF02638 Glycosyl hydrolase-like 10 Tmath_0285 PF06782 Uncharacterised protein family (UPF0236) Tmath_0287 PF01979 Amidohydrolase family Tmath_0288 PF00155 Aminotransferase class I and II Tmath_0289 PF01037 Lrp/AsnC ligand binding domain Tmath_0291 PF04023 FeoA domain Tmath_0291 PF07664 Ferrous iron transport protein B C terminus Tmath_0291 PF17910 FeoB cytosolic helical domain Tmath_0291 PF07670 Nucleoside recognition Tmath_0291 PF02421 Ferrous iron transport protein B Tmath_0292 PF06782 Uncharacterised protein family (UPF0236) Tmath_0294 PF00005 ABC transporter Tmath_0295 PF02361 Cobalt transport protein Tmath_0296 PF01891 Cobalt uptake substrate-specific transmembrane region Tmath_0296 PF13190 PDGLE domain Tmath_0297 PF01891 Cobalt uptake substrate-specific transmembrane region Tmath_0297 PF13190 PDGLE domain Tmath_0298 PF08753 NikR C terminal nickel binding domain Tmath_0298 PF01402 Ribbon-helix-helix protein, copG family Tmath_0299 PF00588 SpoU rRNA Methylase family Tmath_0300 PF11798 IMS family HHH motif Tmath_0300 PF11799 impB/mucB/samB family C-terminal domain Tmath_0300 PF00817 impB/mucB/samB family Tmath_0301 PF01554 MatE Tmath_0302 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tmath_0303 PF00005 ABC transporter Tmath_0304 PF02687 FtsX-like permease family Tmath_0304 PF12704 MacB-like periplasmic core domain Tmath_0304 PF00005 ABC transporter Tmath_0307 PF01557 Fumarylacetoacetate (FAA) hydrolase family Tmath_0308 PF12705 PD-(D/E)XK nuclease superfamily Tmath_0309 PF13361 UvrD-like helicase C-terminal domain Tmath_0309 PF00580 UvrD/REP helicase N-terminal domain Tmath_0309 PF12705 PD-(D/E)XK nuclease superfamily Tmath_0310 PF00149 Calcineurin-like phosphoesterase Tmath_0310 PF12320 Type 5 capsule protein repressor C-terminal domain Tmath_0311 PF13175 AAA ATPase domain Tmath_0312 PF10417 C-terminal domain of 1-Cys peroxiredoxin Tmath_0312 PF00578 AhpC/TSA family Tmath_0316 PF01636 Phosphotransferase enzyme family Tmath_0316 PF18085 Maltokinase N-terminal cap domain Tmath_0317 PF13439 Glycosyltransferase Family 4 Tmath_0317 PF00534 Glycosyl transferases group 1 Tmath_0318 PF09335 SNARE associated Golgi protein Tmath_0319 PF05949 Bacterial protein of unknown function (DUF881) Tmath_0320 PF00056 lactate/malate dehydrogenase, NAD binding domain Tmath_0320 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Tmath_0322 PF01593 Flavin containing amine oxidoreductase Tmath_0323 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0323 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tmath_0323 PF13247 4Fe-4S dicluster domain Tmath_0326 PF06580 Histidine kinase Tmath_0326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0326 PF07694 5TMR of 5TMR-LYT Tmath_0327 PF00072 Response regulator receiver domain Tmath_0327 PF00196 Bacterial regulatory proteins, luxR family Tmath_0328 PF13407 Periplasmic binding protein domain Tmath_0329 PF13407 Periplasmic binding protein domain Tmath_0330 PF00005 ABC transporter Tmath_0331 PF02653 Branched-chain amino acid transport system / permease component Tmath_0332 PF02347 Glycine cleavage system P-protein Tmath_0333 PF02347 Glycine cleavage system P-protein Tmath_0334 PF01597 Glycine cleavage H-protein Tmath_0335 PF01571 Aminomethyltransferase folate-binding domain Tmath_0335 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tmath_0336 PF03099 Biotin/lipoate A/B protein ligase family Tmath_0336 PF10437 Bacterial lipoate protein ligase C-terminus Tmath_0337 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tmath_0337 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0340 PF00155 Aminotransferase class I and II Tmath_0341 PF00874 PRD domain Tmath_0341 PF08279 HTH domain Tmath_0341 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0341 PF05043 Mga helix-turn-helix domain Tmath_0342 PF03611 PTS system sugar-specific permease component Tmath_0343 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0344 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tmath_0345 PF01261 Xylose isomerase-like TIM barrel Tmath_0346 PF00596 Class II Aldolase and Adducin N-terminal domain Tmath_0350 PF00465 Iron-containing alcohol dehydrogenase Tmath_0351 PF00912 Transglycosylase Tmath_0351 PF00905 Penicillin binding protein transpeptidase domain Tmath_0353 PF00440 Bacterial regulatory proteins, tetR family Tmath_0356 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_0358 PF00005 ABC transporter Tmath_0359 PF03649 Uncharacterised protein family (UPF0014) Tmath_0360 PF13603 Leucyl-tRNA synthetase, Domain 2 Tmath_0360 PF09334 tRNA synthetases class I (M) Tmath_0360 PF00133 tRNA synthetases class I (I, L, M and V) Tmath_0360 PF08264 Anticodon-binding domain of tRNA Tmath_0361 PF03591 AzlC protein Tmath_0363 PF00294 pfkB family carbohydrate kinase Tmath_0364 PF04227 Indigoidine synthase A like protein Tmath_0366 PF01384 Phosphate transporter family Tmath_0368 PF00874 PRD domain Tmath_0368 PF00158 Sigma-54 interaction domain Tmath_0368 PF03610 PTS system fructose IIA component Tmath_0369 PF02378 Phosphotransferase system, EIIC Tmath_0370 PF04794 YdjC-like protein Tmath_0371 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0372 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tmath_0373 PF02056 Family 4 glycosyl hydrolase Tmath_0373 PF11975 Family 4 glycosyl hydrolase C-terminal domain Tmath_0374 PF00232 Glycosyl hydrolase family 1 Tmath_0375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0375 PF02378 Phosphotransferase system, EIIC Tmath_0376 PF05043 Mga helix-turn-helix domain Tmath_0376 PF00874 PRD domain Tmath_0376 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0376 PF08279 HTH domain Tmath_0377 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0378 PF08125 Mannitol dehydrogenase C-terminal domain Tmath_0378 PF01232 Mannitol dehydrogenase Rossmann domain Tmath_0379 PF02872 5'-nucleotidase, C-terminal domain Tmath_0379 PF00149 Calcineurin-like phosphoesterase Tmath_0380 PF01207 Dihydrouridine synthase (Dus) Tmath_0381 PF01925 Sulfite exporter TauE/SafE Tmath_0383 PF00356 Bacterial regulatory proteins, lacI family Tmath_0384 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tmath_0385 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0386 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0386 PF12911 N-terminal TM domain of oligopeptide transport permease C Tmath_0387 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_0387 PF00005 ABC transporter Tmath_0388 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_0388 PF00005 ABC transporter Tmath_0389 PF00703 Glycosyl hydrolases family 2 Tmath_0389 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Tmath_0389 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tmath_0389 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tmath_0389 PF16355 Domain of unknown function (DUF4982) Tmath_0391 PF00950 ABC 3 transport family Tmath_0392 PF00005 ABC transporter Tmath_0393 PF01297 Zinc-uptake complex component A periplasmic Tmath_0394 PF01475 Ferric uptake regulator family Tmath_0395 PF04011 LemA family Tmath_0396 PF03466 LysR substrate binding domain Tmath_0396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tmath_0397 PF17179 4Fe-4S dicluster domain Tmath_0398 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_0398 PF00175 Oxidoreductase NAD-binding domain Tmath_0399 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tmath_0399 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tmath_0399 PF13187 4Fe-4S dicluster domain Tmath_0400 PF01026 TatD related DNase Tmath_0403 PF01592 NifU-like N terminal domain Tmath_0409 PF01497 Periplasmic binding protein Tmath_0410 PF01032 FecCD transport family Tmath_0411 PF00005 ABC transporter Tmath_0412 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tmath_0412 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_0413 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tmath_0413 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_0414 PF03186 CobD/Cbib protein Tmath_0417 PF00155 Aminotransferase class I and II Tmath_0418 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Tmath_0419 PF02654 Cobalamin-5-phosphate synthase Tmath_0421 PF02570 Precorrin-8X methylmutase Tmath_0422 PF01888 CbiD Tmath_0423 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0424 PF05175 Methyltransferase small domain Tmath_0425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0426 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0427 PF11760 Cobalamin synthesis G N-terminal Tmath_0427 PF11761 Cobalamin biosynthesis central region Tmath_0427 PF01890 Cobalamin synthesis G C-terminus Tmath_0428 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tmath_0428 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0429 PF02571 Precorrin-6x reductase CbiJ/CobK Tmath_0430 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Tmath_0430 PF01488 Shikimate / quinate 5-dehydrogenase Tmath_0430 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Tmath_0431 PF03900 Porphobilinogen deaminase, C-terminal domain Tmath_0431 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Tmath_0433 PF00490 Delta-aminolevulinic acid dehydratase Tmath_0434 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0434 PF14824 Sirohaem biosynthesis protein central Tmath_0434 PF10414 Sirohaem synthase dimerisation region Tmath_0437 PF00202 Aminotransferase class-III Tmath_0438 PF01891 Cobalt uptake substrate-specific transmembrane region Tmath_0439 PF02553 Cobalt transport protein component CbiN Tmath_0441 PF00005 ABC transporter Tmath_0443 PF00180 Isocitrate/isopropylmalate dehydrogenase Tmath_0454 PF00005 ABC transporter Tmath_0459 PF04055 Radical SAM superfamily Tmath_0459 PF13186 Iron-sulfur cluster-binding domain Tmath_0460 PF07690 Major Facilitator Superfamily Tmath_0468 PF00005 ABC transporter Tmath_0470 PF00196 Bacterial regulatory proteins, luxR family Tmath_0470 PF00072 Response regulator receiver domain Tmath_0484 PF00005 ABC transporter Tmath_0487 PF00881 Nitroreductase family Tmath_0489 PF00072 Response regulator receiver domain Tmath_0489 PF00196 Bacterial regulatory proteins, luxR family Tmath_0492 PF00005 ABC transporter Tmath_0495 PF05343 M42 glutamyl aminopeptidase Tmath_0499 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_0499 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Tmath_0499 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tmath_0499 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tmath_0499 PF10371 Domain of unknown function Tmath_0500 PF01966 HD domain Tmath_0501 PF00672 HAMP domain Tmath_0501 PF02743 Cache domain Tmath_0501 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0502 PF02971 Formiminotransferase domain Tmath_0502 PF07837 Formiminotransferase domain, N-terminal subdomain Tmath_0506 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0507 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0508 PF01547 Bacterial extracellular solute-binding protein Tmath_0509 PF00672 HAMP domain Tmath_0509 PF06580 Histidine kinase Tmath_0509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0509 PF02743 Cache domain Tmath_0510 PF00072 Response regulator receiver domain Tmath_0510 PF12833 Helix-turn-helix domain Tmath_0511 PF04961 Formiminotransferase-cyclodeaminase Tmath_0512 PF02608 ABC transporter substrate-binding protein PnrA-like Tmath_0518 PF07702 UTRA domain Tmath_0518 PF00392 Bacterial regulatory proteins, gntR family Tmath_0519 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tmath_0520 PF01676 Metalloenzyme superfamily Tmath_0521 PF02885 Glycosyl transferase family, helical bundle domain Tmath_0521 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Tmath_0521 PF00591 Glycosyl transferase family, a/b domain Tmath_0522 PF00672 HAMP domain Tmath_0522 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0524 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Tmath_0524 PF00367 phosphotransferase system, EIIB Tmath_0524 PF02378 Phosphotransferase system, EIIC Tmath_0525 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Tmath_0526 PF03123 CAT RNA binding domain Tmath_0526 PF00874 PRD domain Tmath_0527 PF00682 HMGL-like Tmath_0528 PF00330 Aconitase family (aconitate hydratase) Tmath_0530 PF00480 ROK family Tmath_0530 PF01047 MarR family Tmath_0533 PF01968 Hydantoinase/oxoprolinase Tmath_0533 PF05378 Hydantoinase/oxoprolinase N-terminal region Tmath_0536 PF02261 Aspartate decarboxylase Tmath_0537 PF02569 Pantoate-beta-alanine ligase Tmath_0538 PF02548 Ketopantoate hydroxymethyltransferase Tmath_0540 PF08704 tRNA methyltransferase complex GCD14 subunit Tmath_0542 PF04239 Protein of unknown function (DUF421) Tmath_0544 PF00356 Bacterial regulatory proteins, lacI family Tmath_0545 PF00072 Response regulator receiver domain Tmath_0545 PF00486 Transcriptional regulatory protein, C terminal Tmath_0546 PF16736 Single Cache-like Tmath_0546 PF00989 PAS fold Tmath_0546 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0551 PF02915 Rubrerythrin Tmath_0552 PF02597 ThiS family Tmath_0553 PF01171 PP-loop family Tmath_0554 PF00899 ThiF family Tmath_0554 PF14461 Prokaryotic E2 family B Tmath_0555 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tmath_0555 PF02772 S-adenosylmethionine synthetase, central domain Tmath_0555 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tmath_0556 PF13538 UvrD-like helicase C-terminal domain Tmath_0556 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Tmath_0556 PF14490 Helix-hairpin-helix containing domain Tmath_0557 PF00156 Phosphoribosyl transferase domain Tmath_0561 PF00460 Flagella basal body rod protein Tmath_0561 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_0562 PF00700 Bacterial flagellin C-terminal helical region Tmath_0562 PF00669 Bacterial flagellin N-terminal helical region Tmath_0564 PF02623 FliW protein Tmath_0565 PF02599 Global regulator protein family Tmath_0566 PF00669 Bacterial flagellin N-terminal helical region Tmath_0566 PF00700 Bacterial flagellin C-terminal helical region Tmath_0569 PF13537 Glutamine amidotransferase domain Tmath_0569 PF00733 Asparagine synthase Tmath_0572 PF07196 Flagellin hook IN motif Tmath_0572 PF07195 Flagellar hook-associated protein 2 C-terminus Tmath_0572 PF02465 Flagellar hook-associated protein 2 N-terminus Tmath_0573 PF02561 Flagellar protein FliS Tmath_0575 PF02743 Cache domain Tmath_0575 PF00672 HAMP domain Tmath_0575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0577 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tmath_0578 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0579 PF00005 ABC transporter Tmath_0580 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tmath_0580 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Tmath_0582 PF00072 Response regulator receiver domain Tmath_0584 PF02829 3H domain Tmath_0584 PF08279 HTH domain Tmath_0586 PF07516 SecA Wing and Scaffold domain Tmath_0586 PF01043 SecA preprotein cross-linking domain Tmath_0586 PF02810 SEC-C motif Tmath_0586 PF07517 SecA DEAD-like domain Tmath_0588 PF17674 HHH domain Tmath_0588 PF00575 S1 RNA binding domain Tmath_0588 PF09371 Tex-like protein N-terminal domain Tmath_0588 PF16921 Tex protein YqgF-like domain Tmath_0591 PF09335 SNARE associated Golgi protein Tmath_0592 PF01979 Amidohydrolase family Tmath_0593 PF07690 Major Facilitator Superfamily Tmath_0595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tmath_0595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tmath_0596 PF00696 Amino acid kinase family Tmath_0597 PF12822 ECF transporter, substrate-specific component Tmath_0598 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Tmath_0599 PF00814 Glycoprotease family Tmath_0601 PF00814 Glycoprotease family Tmath_0602 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0603 PF16326 ABC transporter C-terminal domain Tmath_0603 PF00005 ABC transporter Tmath_0603 PF12848 ABC transporter Tmath_0604 PF01618 MotA/TolQ/ExbB proton channel family Tmath_0605 PF00691 OmpA family Tmath_0605 PF13677 Membrane MotB of proton-channel complex MotA/MotB Tmath_0606 PF02629 CoA binding domain Tmath_0606 PF06971 Putative DNA-binding protein N-terminus Tmath_0608 PF04397 LytTr DNA-binding domain Tmath_0608 PF00072 Response regulator receiver domain Tmath_0609 PF17203 Single cache domain 3 Tmath_0609 PF00989 PAS fold Tmath_0609 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0609 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Tmath_0613 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_0613 PF00175 Oxidoreductase NAD-binding domain Tmath_0614 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tmath_0614 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0617 PF04474 Protein of unknown function (DUF554) Tmath_0619 PF00082 Subtilase family Tmath_0624 PF00166 Chaperonin 10 Kd subunit Tmath_0625 PF00118 TCP-1/cpn60 chaperonin family Tmath_0626 PF00571 CBS domain Tmath_0626 PF00478 IMP dehydrogenase / GMP reductase domain Tmath_0627 PF02540 NAD synthase Tmath_0627 PF00958 GMP synthase C terminal domain Tmath_0627 PF00117 Glutamine amidotransferase class-I Tmath_0628 PF00860 Permease family Tmath_0629 PF00731 AIR carboxylase Tmath_0630 PF01259 SAICAR synthetase Tmath_0631 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Tmath_0633 PF02769 AIR synthase related protein, C-terminal domain Tmath_0633 PF00586 AIR synthase related protein, N-terminal domain Tmath_0633 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Tmath_0634 PF00156 Phosphoribosyl transferase domain Tmath_0635 PF02769 AIR synthase related protein, C-terminal domain Tmath_0635 PF00586 AIR synthase related protein, N-terminal domain Tmath_0636 PF00551 Formyl transferase Tmath_0637 PF01808 AICARFT/IMPCHase bienzyme Tmath_0637 PF02142 MGS-like domain Tmath_0638 PF02843 Phosphoribosylglycinamide synthetase, C domain Tmath_0638 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tmath_0638 PF02844 Phosphoribosylglycinamide synthetase, N domain Tmath_0639 PF01177 Asp/Glu/Hydantoin racemase Tmath_0640 PF07687 Peptidase dimerisation domain Tmath_0640 PF01546 Peptidase family M20/M25/M40 Tmath_0641 PF14667 Polysaccharide biosynthesis C-terminal domain Tmath_0641 PF01943 Polysaccharide biosynthesis protein Tmath_0643 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0643 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0643 PF00874 PRD domain Tmath_0643 PF08279 HTH domain Tmath_0643 PF05043 Mga helix-turn-helix domain Tmath_0645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0646 PF02378 Phosphotransferase system, EIIC Tmath_0647 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tmath_0649 PF13361 UvrD-like helicase C-terminal domain Tmath_0649 PF00580 UvrD/REP helicase N-terminal domain Tmath_0650 PF00533 BRCA1 C Terminus (BRCT) domain Tmath_0650 PF01653 NAD-dependent DNA ligase adenylation domain Tmath_0650 PF03120 NAD-dependent DNA ligase OB-fold domain Tmath_0650 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Tmath_0650 PF12826 Helix-hairpin-helix motif Tmath_0651 PF02686 Glu-tRNAGln amidotransferase C subunit Tmath_0652 PF01425 Amidase Tmath_0653 PF02637 GatB domain Tmath_0653 PF02934 GatB/GatE catalytic domain Tmath_0655 PF01520 N-acetylmuramoyl-L-alanine amidase Tmath_0655 PF04122 Putative cell wall binding repeat 2 Tmath_0656 PF01138 3' exoribonuclease family, domain 1 Tmath_0656 PF03725 3' exoribonuclease family, domain 2 Tmath_0657 PF01725 Ham1 family Tmath_0661 PF03610 PTS system fructose IIA component Tmath_0661 PF00874 PRD domain Tmath_0661 PF00158 Sigma-54 interaction domain Tmath_0662 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tmath_0663 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0664 PF02378 Phosphotransferase system, EIIC Tmath_0666 PF00834 Ribulose-phosphate 3 epimerase family Tmath_0667 PF02502 Ribose/Galactose Isomerase Tmath_0668 PF00232 Glycosyl hydrolase family 1 Tmath_0670 PF08543 Phosphomethylpyrimidine kinase Tmath_0671 PF02581 Thiamine monophosphate synthase Tmath_0672 PF02110 Hydroxyethylthiazole kinase family Tmath_0674 PF02110 Hydroxyethylthiazole kinase family Tmath_0675 PF01895 PhoU domain Tmath_0676 PF00005 ABC transporter Tmath_0677 PF12399 Branched-chain amino acid ATP-binding cassette transporter Tmath_0677 PF00005 ABC transporter Tmath_0678 PF02653 Branched-chain amino acid transport system / permease component Tmath_0678 PF11862 Domain of unknown function (DUF3382) Tmath_0679 PF02653 Branched-chain amino acid transport system / permease component Tmath_0680 PF13458 Periplasmic binding protein Tmath_0685 PF05697 Bacterial trigger factor protein (TF) Tmath_0685 PF05698 Bacterial trigger factor protein (TF) C-terminus Tmath_0685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tmath_0686 PF00574 Clp protease Tmath_0687 PF06689 ClpX C4-type zinc finger Tmath_0687 PF07724 AAA domain (Cdc48 subfamily) Tmath_0687 PF10431 C-terminal, D2-small domain, of ClpB protein Tmath_0688 PF02190 ATP-dependent protease La (LON) substrate-binding domain Tmath_0688 PF05362 Lon protease (S16) C-terminal proteolytic domain Tmath_0688 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_0689 PF01926 50S ribosome-binding GTPase Tmath_0691 PF00119 ATP synthase A chain Tmath_0692 PF00137 ATP synthase subunit C Tmath_0693 PF00430 ATP synthase B/B' CF(0) Tmath_0694 PF00213 ATP synthase delta (OSCP) subunit Tmath_0695 PF00306 ATP synthase alpha/beta chain, C terminal domain Tmath_0695 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_0695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0696 PF00231 ATP synthase Tmath_0697 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_0697 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0698 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tmath_0698 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Tmath_0700 PF02540 NAD synthase Tmath_0700 PF00795 Carbon-nitrogen hydrolase Tmath_0701 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0702 PF00005 ABC transporter Tmath_0706 PF03448 MgtE intracellular N domain Tmath_0706 PF01769 Divalent cation transporter Tmath_0706 PF00571 CBS domain Tmath_0711 PF17202 Single cache domain 3 Tmath_0711 PF00672 HAMP domain Tmath_0711 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0713 PF02719 Polysaccharide biosynthesis protein Tmath_0714 PF16363 GDP-mannose 4,6 dehydratase Tmath_0715 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tmath_0716 PF02348 Cytidylyltransferase Tmath_0718 PF08666 SAF domain Tmath_0718 PF03102 NeuB family Tmath_0719 PF04101 Glycosyltransferase family 28 C-terminal domain Tmath_0722 PF00534 Glycosyl transferases group 1 Tmath_0722 PF13439 Glycosyltransferase Family 4 Tmath_0723 PF02397 Bacterial sugar transferase Tmath_0724 PF01050 Mannose-6-phosphate isomerase Tmath_0724 PF00483 Nucleotidyl transferase Tmath_0725 PF13807 G-rich domain on putative tyrosine kinase Tmath_0725 PF02706 Chain length determinant protein Tmath_0731 PF03477 ATP cone domain Tmath_0733 PF12850 Calcineurin-like phosphoesterase superfamily domain Tmath_0735 PF01566 Natural resistance-associated macrophage protein Tmath_0737 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Tmath_0754 PF00248 Aldo/keto reductase family Tmath_0756 PF00248 Aldo/keto reductase family Tmath_0759 PF13411 MerR HTH family regulatory protein Tmath_0761 PF03030 Inorganic H+ pyrophosphatase Tmath_0763 PF01139 tRNA-splicing ligase RtcB Tmath_0764 PF00467 KOW motif Tmath_0764 PF02357 Transcription termination factor nusG Tmath_0765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tmath_0765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tmath_0765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tmath_0765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tmath_0766 PF00483 Nucleotidyl transferase Tmath_0767 PF13807 G-rich domain on putative tyrosine kinase Tmath_0767 PF02706 Chain length determinant protein Tmath_0770 PF00689 Cation transporting ATPase, C-terminus Tmath_0770 PF00690 Cation transporter/ATPase, N-terminus Tmath_0771 PF00334 Nucleoside diphosphate kinase Tmath_0772 PF07690 Major Facilitator Superfamily Tmath_0773 PF10997 Alternate to MurJ Tmath_0777 PF01066 CDP-alcohol phosphatidyltransferase Tmath_0778 PF02540 NAD synthase Tmath_0779 PF00731 AIR carboxylase Tmath_0780 PF01969 Protein of unknown function DUF111 Tmath_0781 PF01969 Protein of unknown function DUF111 Tmath_0782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0782 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0782 PF00989 PAS fold Tmath_0782 PF16736 Single Cache-like Tmath_0783 PF00486 Transcriptional regulatory protein, C terminal Tmath_0783 PF00072 Response regulator receiver domain Tmath_0784 PF10925 Protein of unknown function (DUF2680) Tmath_0785 PF02632 BioY family Tmath_0787 PF08264 Anticodon-binding domain of tRNA Tmath_0787 PF00133 tRNA synthetases class I (I, L, M and V) Tmath_0787 PF10458 Valyl tRNA synthetase tRNA binding arm Tmath_0789 PF02875 Mur ligase family, glutamate ligase domain Tmath_0789 PF08245 Mur ligase middle domain Tmath_0793 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_0794 PF08331 Domain of unknown function (DUF1730) Tmath_0795 PF00356 Bacterial regulatory proteins, lacI family Tmath_0796 PF03632 Glycosyl hydrolase family 65 central catalytic domain Tmath_0796 PF03636 Glycosyl hydrolase family 65, N-terminal domain Tmath_0796 PF03633 Glycosyl hydrolase family 65, C-terminal domain Tmath_0797 PF01547 Bacterial extracellular solute-binding protein Tmath_0798 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0799 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0800 PF13419 Haloacid dehalogenase-like hydrolase Tmath_0801 PF00356 Bacterial regulatory proteins, lacI family Tmath_0802 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0803 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0805 PF03633 Glycosyl hydrolase family 65, C-terminal domain Tmath_0805 PF03632 Glycosyl hydrolase family 65 central catalytic domain Tmath_0805 PF03636 Glycosyl hydrolase family 65, N-terminal domain Tmath_0806 PF00082 Subtilase family Tmath_0808 PF03610 PTS system fructose IIA component Tmath_0808 PF00158 Sigma-54 interaction domain Tmath_0808 PF00874 PRD domain Tmath_0809 PF01471 Putative peptidoglycan binding domain Tmath_0809 PF07486 Cell Wall Hydrolase Tmath_0812 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Tmath_0813 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_0813 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Tmath_0813 PF14602 Hexapeptide repeat of succinyl-transferase Tmath_0814 PF05173 Dihydrodipicolinate reductase, C-terminus Tmath_0814 PF01113 Dihydrodipicolinate reductase, N-terminus Tmath_0815 PF00701 Dihydrodipicolinate synthetase family Tmath_0816 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tmath_0816 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tmath_0818 PF00664 ABC transporter transmembrane region Tmath_0818 PF00005 ABC transporter Tmath_0819 PF00005 ABC transporter Tmath_0819 PF00664 ABC transporter transmembrane region Tmath_0821 PF03951 Glutamine synthetase, beta-Grasp domain Tmath_0821 PF00120 Glutamine synthetase, catalytic domain Tmath_0822 PF00072 Response regulator receiver domain Tmath_0823 PF01979 Amidohydrolase family Tmath_0824 PF00392 Bacterial regulatory proteins, gntR family Tmath_0824 PF00155 Aminotransferase class I and II Tmath_0826 PF04225 Opacity-associated protein A LysM-like domain Tmath_0826 PF01551 Peptidase family M23 Tmath_0833 PF01343 Peptidase family S49 Tmath_0836 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tmath_0836 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tmath_0837 PF04260 Protein of unknown function (DUF436) Tmath_0841 PF00005 ABC transporter Tmath_0844 PF01476 LysM domain Tmath_0844 PF00704 Glycosyl hydrolases family 18 Tmath_0847 PF00324 Amino acid permease Tmath_0848 PF08281 Sigma-70, region 4 Tmath_0848 PF04542 Sigma-70 region 2 Tmath_0850 PF01367 5'-3' exonuclease, C-terminal SAM fold Tmath_0850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tmath_0850 PF00476 DNA polymerase family A Tmath_0851 PF01121 Dephospho-CoA kinase Tmath_0854 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tmath_0856 PF00877 NlpC/P60 family Tmath_0858 PF01464 Transglycosylase SLT domain Tmath_0862 PF04060 Putative Fe-S cluster Tmath_0866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0866 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tmath_0866 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0868 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tmath_0868 PF00037 4Fe-4S binding domain Tmath_0868 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tmath_0869 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tmath_0869 PF02256 Iron hydrogenase small subunit Tmath_0869 PF00037 4Fe-4S binding domain Tmath_0869 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tmath_0871 PF02545 Maf-like protein Tmath_0872 PF04002 RadC-like JAB domain Tmath_0876 PF00905 Penicillin binding protein transpeptidase domain Tmath_0876 PF03717 Penicillin-binding Protein dimerisation domain Tmath_0877 PF03775 Septum formation inhibitor MinC, C-terminal domain Tmath_0878 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_0879 PF03776 Septum formation topological specificity factor MinE Tmath_0880 PF01098 Cell cycle protein Tmath_0881 PF02142 MGS-like domain Tmath_0882 PF01476 LysM domain Tmath_0882 PF08525 Opacity-associated protein A N-terminal motif Tmath_0882 PF01551 Peptidase family M23 Tmath_0883 PF00571 CBS domain Tmath_0883 PF02163 Peptidase family M50 Tmath_0886 PF00575 S1 RNA binding domain Tmath_0886 PF10150 Ribonuclease E/G family Tmath_0887 PF14489 QueF-like protein Tmath_0889 PF06782 Uncharacterised protein family (UPF0236) Tmath_0890 PF06782 Uncharacterised protein family (UPF0236) Tmath_0891 PF06305 Lipopolysaccharide assembly protein A domain Tmath_0892 PF00829 Ribosomal prokaryotic L21 protein Tmath_0894 PF01016 Ribosomal L27 protein Tmath_0896 PF01926 50S ribosome-binding GTPase Tmath_0896 PF01018 GTP1/OBG Tmath_0896 PF09269 Domain of unknown function (DUF1967) Tmath_0898 PF01467 Cytidylyltransferase-like Tmath_0899 PF01966 HD domain Tmath_0900 PF03816 Cell envelope-related transcriptional attenuator domain Tmath_0903 PF02558 Ketopantoate reductase PanE/ApbA Tmath_0903 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Tmath_0905 PF13537 Glutamine amidotransferase domain Tmath_0905 PF00733 Asparagine synthase Tmath_0906 PF00768 D-alanyl-D-alanine carboxypeptidase Tmath_0906 PF07943 Penicillin-binding protein 5, C-terminal domain Tmath_0907 PF10531 SLBB domain Tmath_0909 PF04608 Phosphatidylglycerophosphatase A Tmath_0910 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tmath_0913 PF12838 4Fe-4S dicluster domain Tmath_0914 PF01063 Amino-transferase class IV Tmath_0917 PF07155 ECF-type riboflavin transporter, S component Tmath_0919 PF00753 Metallo-beta-lactamase superfamily Tmath_0919 PF12706 Beta-lactamase superfamily domain Tmath_0920 PF13567 Domain of unknown function (DUF4131) Tmath_0920 PF03772 Competence protein Tmath_0920 PF00753 Metallo-beta-lactamase superfamily Tmath_0922 PF01649 Ribosomal protein S20 Tmath_0923 PF03169 OPT oligopeptide transporter protein Tmath_0927 PF03418 Germination protease Tmath_0930 PF00534 Glycosyl transferases group 1 Tmath_0930 PF13477 Glycosyl transferase 4-like Tmath_0932 PF06421 GTP-binding protein LepA C-terminus Tmath_0932 PF00679 Elongation factor G C-terminus Tmath_0932 PF14492 Elongation Factor G, domain II Tmath_0932 PF00009 Elongation factor Tu GTP binding domain Tmath_0932 PF03144 Elongation factor Tu domain 2 Tmath_0933 PF04055 Radical SAM superfamily Tmath_0933 PF06969 HemN C-terminal domain Tmath_0934 PF01628 HrcA protein C terminal domain Tmath_0935 PF01025 GrpE Tmath_0936 PF00012 Hsp70 protein Tmath_0937 PF00226 DnaJ domain Tmath_0937 PF01556 DnaJ C terminal domain Tmath_0937 PF00684 DnaJ central domain Tmath_0939 PF04452 RNA methyltransferase Tmath_0941 PF05167 Uncharacterised ACR (DUF711) Tmath_0943 PF03773 Predicted permease Tmath_0947 PF00072 Response regulator receiver domain Tmath_0947 PF00486 Transcriptional regulatory protein, C terminal Tmath_0948 PF00672 HAMP domain Tmath_0948 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0949 PF00483 Nucleotidyl transferase Tmath_0952 PF00535 Glycosyl transferase family 2 Tmath_0954 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Tmath_0955 PF01938 TRAM domain Tmath_0955 PF04055 Radical SAM superfamily Tmath_0955 PF00919 Uncharacterized protein family UPF0004 Tmath_0956 PF01230 HIT domain Tmath_0957 PF01165 Ribosomal protein S21 Tmath_0959 PF07873 YabP family Tmath_0960 PF06898 Putative stage IV sporulation protein YqfD Tmath_0961 PF02562 PhoH-like protein Tmath_0962 PF01966 HD domain Tmath_0962 PF07698 7TM receptor with intracellular HD hydrolase Tmath_0962 PF07697 7TM-HD extracellular Tmath_0963 PF02130 Uncharacterized protein family UPF0054 Tmath_0964 PF01219 Prokaryotic diacylglycerol kinase Tmath_0965 PF07650 KH domain Tmath_0965 PF01926 50S ribosome-binding GTPase Tmath_0966 PF01791 DeoC/LacD family aldolase Tmath_0967 PF02565 Recombination protein O C terminal Tmath_0967 PF11967 Recombination protein O N terminal Tmath_0969 PF03129 Anticodon binding domain Tmath_0969 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_0971 PF03618 Kinase/pyrophosphorylase Tmath_0972 PF00391 PEP-utilising enzyme, mobile domain Tmath_0972 PF02896 PEP-utilising enzyme, TIM barrel domain Tmath_0972 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tmath_0974 PF08206 Ribonuclease B OB domain Tmath_0974 PF00575 S1 RNA binding domain Tmath_0974 PF17876 Cold shock domain Tmath_0974 PF00773 RNB domain Tmath_0975 PF01668 SmpB protein Tmath_0985 PF00005 ABC transporter Tmath_0990 PF00005 ABC transporter Tmath_0990 PF00664 ABC transporter transmembrane region Tmath_0993 PF00005 ABC transporter Tmath_1002 PF01470 Pyroglutamyl peptidase Tmath_1004 PF01965 DJ-1/PfpI family Tmath_1005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tmath_1005 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1006 PF08386 TAP-like protein Tmath_1006 PF00561 alpha/beta hydrolase fold Tmath_1010 PF01661 Macro domain Tmath_1011 PF02673 Bacitracin resistance protein BacA Tmath_1013 PF14098 Small, acid-soluble spore protein I Tmath_1016 PF00258 Flavodoxin Tmath_1016 PF00753 Metallo-beta-lactamase superfamily Tmath_1017 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tmath_1019 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_1019 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tmath_1020 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Tmath_1020 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Tmath_1021 PF04199 Putative cyclase Tmath_1023 PF03315 Serine dehydratase beta chain Tmath_1024 PF03313 Serine dehydratase alpha chain Tmath_1025 PF01432 Peptidase family M3 Tmath_1025 PF08439 Oligopeptidase F Tmath_1026 PF01761 3-dehydroquinate synthase Tmath_1027 PF01817 Chorismate mutase type II Tmath_1027 PF00800 Prephenate dehydratase Tmath_1027 PF01842 ACT domain Tmath_1028 PF18152 DAHP synthase ferredoxin-like domain Tmath_1028 PF00793 DAHP synthetase I family Tmath_1029 PF02153 Prephenate dehydrogenase Tmath_1029 PF01842 ACT domain Tmath_1030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_1032 PF01471 Putative peptidoglycan binding domain Tmath_1032 PF07486 Cell Wall Hydrolase Tmath_1033 PF01169 Uncharacterized protein family UPF0016 Tmath_1036 PF00486 Transcriptional regulatory protein, C terminal Tmath_1036 PF00072 Response regulator receiver domain Tmath_1037 PF00512 His Kinase A (phospho-acceptor) domain Tmath_1037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1037 PF00672 HAMP domain Tmath_1040 PF00480 ROK family Tmath_1041 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Tmath_1043 PF02683 Cytochrome C biogenesis protein transmembrane region Tmath_1044 PF00578 AhpC/TSA family Tmath_1045 PF01276 Orn/Lys/Arg decarboxylase, major domain Tmath_1045 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tmath_1050 PF01926 50S ribosome-binding GTPase Tmath_1050 PF13167 GTP-binding GTPase N-terminal Tmath_1050 PF16360 GTP-binding GTPase Middle Region Tmath_1053 PF01205 Uncharacterized protein family UPF0029 Tmath_1053 PF09186 Domain of unknown function (DUF1949) Tmath_1057 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_1058 PF01709 Transcriptional regulator Tmath_1059 PF01584 CheW-like domain Tmath_1061 PF02075 Crossover junction endodeoxyribonuclease RuvC Tmath_1062 PF07499 RuvA, C-terminal domain Tmath_1062 PF01330 RuvA N terminal domain Tmath_1063 PF05496 Holliday junction DNA helicase RuvB P-loop domain Tmath_1063 PF17864 RuvB AAA lid domain Tmath_1063 PF05491 RuvB C-terminal winged helix domain Tmath_1065 PF08486 Stage II sporulation protein Tmath_1065 PF04122 Putative cell wall binding repeat 2 Tmath_1066 PF02547 Queuosine biosynthesis protein Tmath_1067 PF01702 Queuine tRNA-ribosyltransferase Tmath_1071 PF04055 Radical SAM superfamily Tmath_1072 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_1073 PF07549 SecD/SecF GG Motif Tmath_1073 PF02355 Protein export membrane protein Tmath_1074 PF02355 Protein export membrane protein Tmath_1074 PF07549 SecD/SecF GG Motif Tmath_1075 PF03109 ABC1 family Tmath_1076 PF17768 RecJ OB domain Tmath_1076 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Tmath_1076 PF02272 DHHA1 domain Tmath_1076 PF01368 DHH family Tmath_1077 PF00156 Phosphoribosyl transferase domain Tmath_1078 PF02824 TGS domain Tmath_1078 PF04607 Region found in RelA / SpoT proteins Tmath_1078 PF13291 ACT domain Tmath_1079 PF02580 D-Tyr-tRNA(Tyr) deacylase Tmath_1080 PF00753 Metallo-beta-lactamase superfamily Tmath_1081 PF12704 MacB-like periplasmic core domain Tmath_1081 PF02687 FtsX-like permease family Tmath_1082 PF00005 ABC transporter Tmath_1083 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tmath_1086 PF13393 Histidyl-tRNA synthetase Tmath_1086 PF03129 Anticodon binding domain Tmath_1087 PF00152 tRNA synthetases class II (D, K and N) Tmath_1087 PF02938 GAD domain Tmath_1087 PF01336 OB-fold nucleic acid binding domain Tmath_1088 PF00899 ThiF family Tmath_1089 PF02583 Metal-sensitive transcriptional repressor Tmath_1090 PF00085 Thioredoxin Tmath_1092 PF01168 Alanine racemase, N-terminal domain Tmath_1093 PF02082 Transcriptional regulator Tmath_1095 PF01594 AI-2E family transporter Tmath_1096 PF01411 tRNA synthetases class II (A) Tmath_1096 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1096 PF02272 DHHA1 domain Tmath_1097 PF06135 IreB regulatory phosphoprotein Tmath_1098 PF03652 Holliday junction resolvase Tmath_1099 PF06949 Protein of unknown function (DUF1292) Tmath_1100 PF01475 Ferric uptake regulator family Tmath_1101 PF17770 Ribonuclease J C-terminal domain Tmath_1101 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tmath_1101 PF00753 Metallo-beta-lactamase superfamily Tmath_1102 PF06133 Control of competence regulator ComK, YlbF/YmcA Tmath_1104 PF02618 YceG-like family Tmath_1107 PF03717 Penicillin-binding Protein dimerisation domain Tmath_1107 PF00905 Penicillin binding protein transpeptidase domain Tmath_1108 PF04542 Sigma-70 region 2 Tmath_1108 PF04545 Sigma-70, region 4 Tmath_1110 PF01488 Shikimate / quinate 5-dehydrogenase Tmath_1110 PF08501 Shikimate dehydrogenase substrate binding domain Tmath_1111 PF00437 Type II/IV secretion system protein Tmath_1112 PF00437 Type II/IV secretion system protein Tmath_1113 PF00482 Type II secretion system (T2SS), protein F Tmath_1115 PF01478 Type IV leader peptidase family Tmath_1115 PF06750 Bacterial Peptidase A24 N-terminal domain Tmath_1124 PF01202 Shikimate kinase Tmath_1126 PF00696 Amino acid kinase family Tmath_1126 PF01472 PUA domain Tmath_1127 PF00171 Aldehyde dehydrogenase family Tmath_1128 PF01220 Dehydroquinase class II Tmath_1129 PF01321 Creatinase/Prolidase N-terminal domain Tmath_1129 PF00557 Metallopeptidase family M24 Tmath_1130 PF01132 Elongation factor P (EF-P) OB domain Tmath_1130 PF08207 Elongation factor P (EF-P) KOW-like domain Tmath_1130 PF09285 Elongation factor P, C-terminal Tmath_1134 PF06686 Stage III sporulation protein AC/AD protein family Tmath_1135 PF06686 Stage III sporulation protein AC/AD protein family Tmath_1136 PF09546 Stage III sporulation protein AE (spore_III_AE) Tmath_1137 PF09581 Stage III sporulation protein AF (Spore_III_AF) Tmath_1140 PF03780 Asp23 family, cell envelope-related function Tmath_1141 PF01029 NusB family Tmath_1142 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tmath_1142 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tmath_1143 PF13742 OB-fold nucleic acid binding domain Tmath_1143 PF02601 Exonuclease VII, large subunit Tmath_1144 PF02609 Exonuclease VII small subunit Tmath_1145 PF00348 Polyprenyl synthetase Tmath_1147 PF02779 Transketolase, pyrimidine binding domain Tmath_1147 PF02780 Transketolase, C-terminal domain Tmath_1147 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tmath_1148 PF01479 S4 domain Tmath_1148 PF01728 FtsJ-like methyltransferase Tmath_1149 PF01513 ATP-NAD kinase Tmath_1150 PF01316 Arginine repressor, DNA binding domain Tmath_1150 PF02863 Arginine repressor, C-terminal domain Tmath_1151 PF02463 RecF/RecN/SMC N terminal domain Tmath_1152 PF17820 PDZ domain Tmath_1152 PF05580 SpoIVB peptidase S55 Tmath_1153 PF08769 Sporulation initiation factor Spo0A C terminal Tmath_1153 PF00072 Response regulator receiver domain Tmath_1156 PF00535 Glycosyl transferase family 2 Tmath_1160 PF00293 NUDIX domain Tmath_1162 PF01944 Stage II sporulation protein M Tmath_1163 PF00589 Phage integrase family Tmath_1163 PF02899 Phage integrase, N-terminal SAM-like domain Tmath_1164 PF07943 Penicillin-binding protein 5, C-terminal domain Tmath_1164 PF00768 D-alanyl-D-alanine carboxypeptidase Tmath_1165 PF01740 STAS domain Tmath_1166 PF13581 Histidine kinase-like ATPase domain Tmath_1167 PF04539 Sigma-70 region 3 Tmath_1167 PF04542 Sigma-70 region 2 Tmath_1167 PF04545 Sigma-70, region 4 Tmath_1168 PF07311 Dodecin Tmath_1169 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Tmath_1171 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Tmath_1172 PF12627 Probable RNA and SrmB- binding site of polymerase A Tmath_1172 PF01966 HD domain Tmath_1172 PF01743 Poly A polymerase head domain Tmath_1173 PF02163 Peptidase family M50 Tmath_1174 PF02616 Segregation and condensation protein ScpA Tmath_1175 PF04079 Segregation and condensation complex subunit ScpB Tmath_1176 PF06207 Protein of unknown function (DUF1002) Tmath_1178 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Tmath_1179 PF00768 D-alanyl-D-alanine carboxypeptidase Tmath_1179 PF07943 Penicillin-binding protein 5, C-terminal domain Tmath_1181 PF01134 Glucose inhibited division protein A Tmath_1181 PF13932 GidA associated domain Tmath_1182 PF00849 RNA pseudouridylate synthase Tmath_1182 PF01479 S4 domain Tmath_1184 PF17284 Spermidine synthase tetramerisation domain Tmath_1185 PF00491 Arginase family Tmath_1186 PF00364 Biotin-requiring enzyme Tmath_1186 PF02436 Conserved carboxylase domain Tmath_1186 PF00682 HMGL-like Tmath_1187 PF01476 LysM domain Tmath_1187 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Tmath_1189 PF01975 Survival protein SurE Tmath_1191 PF01418 Helix-turn-helix domain, rpiR family Tmath_1191 PF01380 SIS domain Tmath_1192 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tmath_1192 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tmath_1194 PF00300 Histidine phosphatase superfamily (branch 1) Tmath_1197 PF07736 Chorismate mutase type I Tmath_1198 PF02224 Cytidylate kinase Tmath_1199 PF01553 Acyltransferase Tmath_1200 PF02401 LytB protein Tmath_1201 PF02675 S-adenosylmethionine decarboxylase Tmath_1202 PF03705 CheR methyltransferase, all-alpha domain Tmath_1202 PF01739 CheR methyltransferase, SAM binding domain Tmath_1203 PF00919 Uncharacterized protein family UPF0004 Tmath_1203 PF01938 TRAM domain Tmath_1203 PF04055 Radical SAM superfamily Tmath_1204 PF01624 MutS domain I Tmath_1204 PF05190 MutS family domain IV Tmath_1204 PF05188 MutS domain II Tmath_1204 PF00488 MutS domain V Tmath_1204 PF05192 MutS domain III Tmath_1207 PF17209 Hfq protein Tmath_1208 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tmath_1208 PF03807 NADP oxidoreductase coenzyme F420-dependent Tmath_1209 PF00075 RNase H Tmath_1210 PF02899 Phage integrase, N-terminal SAM-like domain Tmath_1210 PF00589 Phage integrase family Tmath_1211 PF06838 Methionine gamma-lyase Tmath_1212 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1212 PF17866 AAA lid domain Tmath_1213 PF00206 Lyase Tmath_1213 PF10397 Adenylosuccinate lyase C-terminus Tmath_1214 PF00155 Aminotransferase class I and II Tmath_1215 PF02811 PHP domain Tmath_1216 PF04232 Stage V sporulation protein S (SpoVS) Tmath_1217 PF13277 YmdB-like protein Tmath_1218 PF12072 Domain of unknown function (DUF3552) Tmath_1218 PF00013 KH domain Tmath_1218 PF01966 HD domain Tmath_1219 PF02631 RecX family Tmath_1220 PF00154 recA bacterial DNA recombination protein Tmath_1221 PF00994 Probable molybdopterin binding domain Tmath_1221 PF02464 Competence-damaged protein Tmath_1221 PF18146 Damage-inducible protein CinA KH domain Tmath_1222 PF01066 CDP-alcohol phosphatidyltransferase Tmath_1223 PF18693 TRAM domain Tmath_1223 PF00919 Uncharacterized protein family UPF0004 Tmath_1223 PF04055 Radical SAM superfamily Tmath_1224 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Tmath_1224 PF17854 FtsK alpha domain Tmath_1224 PF09397 Ftsk gamma domain Tmath_1224 PF01580 FtsK/SpoIIIE family Tmath_1226 PF00574 Clp protease Tmath_1227 PF13840 ACT domain Tmath_1227 PF00696 Amino acid kinase family Tmath_1229 PF00692 dUTPase Tmath_1230 PF00675 Insulinase (Peptidase family M16) Tmath_1230 PF05193 Peptidase M16 inactive domain Tmath_1231 PF01522 Polysaccharide deacetylase Tmath_1232 PF00575 S1 RNA binding domain Tmath_1232 PF03725 3' exoribonuclease family, domain 2 Tmath_1232 PF01138 3' exoribonuclease family, domain 1 Tmath_1232 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tmath_1232 PF00013 KH domain Tmath_1233 PF00312 Ribosomal protein S15 Tmath_1234 PF01687 Riboflavin kinase Tmath_1234 PF06574 FAD synthetase Tmath_1235 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tmath_1235 PF09157 Pseudouridine synthase II TruB, C-terminal Tmath_1235 PF16198 tRNA pseudouridylate synthase B C-terminal domain Tmath_1236 PF02272 DHHA1 domain Tmath_1236 PF01368 DHH family Tmath_1237 PF02033 Ribosome-binding factor A Tmath_1238 PF04760 Translation initiation factor IF-2, N-terminal region Tmath_1238 PF00009 Elongation factor Tu GTP binding domain Tmath_1238 PF11987 Translation-initiation factor 2 Tmath_1240 PF04296 Protein of unknown function (DUF448) Tmath_1241 PF13184 NusA-like KH domain Tmath_1241 PF08529 NusA N-terminal domain Tmath_1241 PF00575 S1 RNA binding domain Tmath_1242 PF17384 RimP C-terminal SH3 domain Tmath_1242 PF02576 RimP N-terminal domain Tmath_1243 PF11490 DNA polymerase III polC-type N-terminus II Tmath_1243 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tmath_1243 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tmath_1243 PF14579 Helix-hairpin-helix motif Tmath_1243 PF02811 PHP domain Tmath_1243 PF00929 Exonuclease Tmath_1244 PF00535 Glycosyl transferase family 2 Tmath_1245 PF04551 GcpE protein Tmath_1246 PF17820 PDZ domain Tmath_1246 PF02163 Peptidase family M50 Tmath_1247 PF13288 DXP reductoisomerase C-terminal domain Tmath_1247 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tmath_1247 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Tmath_1249 PF01255 Putative undecaprenyl diphosphate synthase Tmath_1251 PF01765 Ribosome recycling factor Tmath_1252 PF00696 Amino acid kinase family Tmath_1253 PF00889 Elongation factor TS Tmath_1254 PF00318 Ribosomal protein S2 Tmath_1257 PF04545 Sigma-70, region 4 Tmath_1257 PF04542 Sigma-70 region 2 Tmath_1257 PF04539 Sigma-70 region 3 Tmath_1258 PF03975 CheD chemotactic sensory transduction Tmath_1259 PF04509 CheC-like family Tmath_1260 PF01584 CheW-like domain Tmath_1261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1261 PF07194 P2 response regulator binding domain Tmath_1261 PF01584 CheW-like domain Tmath_1261 PF02895 Signal transducing histidine kinase, homodimeric domain Tmath_1261 PF01627 Hpt domain Tmath_1262 PF01339 CheB methylesterase Tmath_1262 PF00072 Response regulator receiver domain Tmath_1264 PF10609 NUBPL iron-transfer P-loop NTPase Tmath_1265 PF00448 SRP54-type protein, GTPase domain Tmath_1266 PF00771 FHIPEP family Tmath_1267 PF01312 FlhB HrpN YscU SpaS Family Tmath_1268 PF01311 Bacterial export proteins, family 1 Tmath_1269 PF01313 Bacterial export proteins, family 3 Tmath_1270 PF00813 FliP family Tmath_1272 PF00072 Response regulator receiver domain Tmath_1273 PF04509 CheC-like family Tmath_1273 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tmath_1274 PF02154 Flagellar motor switch protein FliM Tmath_1274 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tmath_1275 PF03748 Flagellar basal body-associated protein FliL Tmath_1276 PF06289 Flagellar and Swarming motility proteins Tmath_1277 PF07559 Flagellar basal body protein FlaE Tmath_1277 PF00460 Flagella basal body rod protein Tmath_1277 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_1279 PF03963 Flagellar hook capping protein - N-terminal region Tmath_1283 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_1283 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_1283 PF18269 T3SS EscN ATPase C-terminal domain Tmath_1285 PF01706 FliG C-terminal domain Tmath_1285 PF14841 FliG middle domain Tmath_1285 PF14842 FliG N-terminal domain Tmath_1286 PF01514 Secretory protein of YscJ/FliF family Tmath_1286 PF08345 Flagellar M-ring protein C-terminal Tmath_1287 PF02049 Flagellar hook-basal body complex protein FliE Tmath_1288 PF00460 Flagella basal body rod protein Tmath_1288 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_1289 PF00460 Flagella basal body rod protein Tmath_1290 PF06018 CodY GAF-like domain Tmath_1290 PF08222 CodY helix-turn-helix domain Tmath_1291 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1291 PF07724 AAA domain (Cdc48 subfamily) Tmath_1291 PF10431 C-terminal, D2-small domain, of ClpB protein Tmath_1292 PF00227 Proteasome subunit Tmath_1293 PF01396 Topoisomerase DNA binding C4 zinc finger Tmath_1293 PF01131 DNA topoisomerase Tmath_1293 PF01751 Toprim domain Tmath_1294 PF02481 DNA recombination-mediator protein A Tmath_1295 PF01351 Ribonuclease HII Tmath_1296 PF02021 Uncharacterised protein family UPF0102 Tmath_1297 PF00579 tRNA synthetases class I (W and Y) Tmath_1298 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Tmath_1298 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tmath_1299 PF13335 Magnesium chelatase, subunit ChlI C-terminal Tmath_1299 PF01078 Magnesium chelatase, subunit ChlI Tmath_1300 PF01926 50S ribosome-binding GTPase Tmath_1301 PF01245 Ribosomal protein L19 Tmath_1302 PF01746 tRNA (Guanine-1)-methyltransferase Tmath_1303 PF01782 RimM N-terminal domain Tmath_1303 PF05239 PRC-barrel domain Tmath_1305 PF00886 Ribosomal protein S16 Tmath_1306 PF00448 SRP54-type protein, GTPase domain Tmath_1306 PF02881 SRP54-type protein, helical bundle domain Tmath_1306 PF02978 Signal peptide binding domain Tmath_1307 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Tmath_1308 PF00448 SRP54-type protein, GTPase domain Tmath_1308 PF02881 SRP54-type protein, helical bundle domain Tmath_1309 PF06470 SMC proteins Flexible Hinge Domain Tmath_1309 PF02463 RecF/RecN/SMC N terminal domain Tmath_1311 PF04232 Stage V sporulation protein S (SpoVS) Tmath_1313 PF01174 SNO glutamine amidotransferase family Tmath_1314 PF01680 SOR/SNZ family Tmath_1315 PF04055 Radical SAM superfamily Tmath_1315 PF06968 Biotin and Thiamin Synthesis associated domain Tmath_1318 PF13247 4Fe-4S dicluster domain Tmath_1318 PF00037 4Fe-4S binding domain Tmath_1319 PF01645 Conserved region in glutamate synthase Tmath_1319 PF13187 4Fe-4S dicluster domain Tmath_1320 PF00310 Glutamine amidotransferases class-II Tmath_1321 PF00117 Glutamine amidotransferase class-I Tmath_1321 PF00958 GMP synthase C terminal domain Tmath_1323 PF00543 Nitrogen regulatory protein P-II Tmath_1324 PF00909 Ammonium Transporter Family Tmath_1325 PF00120 Glutamine synthetase, catalytic domain Tmath_1325 PF12437 Glutamine synthetase type III N terminal Tmath_1325 PF18318 Glutamine synthetase C-terminal domain Tmath_1327 PF00035 Double-stranded RNA binding motif Tmath_1327 PF14622 Ribonuclease-III-like Tmath_1328 PF02801 Beta-ketoacyl synthase, C-terminal domain Tmath_1328 PF00109 Beta-ketoacyl synthase, N-terminal domain Tmath_1329 PF00550 Phosphopantetheine attachment site Tmath_1331 PF00698 Acyl transferase domain Tmath_1332 PF03060 Nitronate monooxygenase Tmath_1333 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Tmath_1333 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Tmath_1334 PF02504 Fatty acid synthesis protein Tmath_1336 PF01783 Ribosomal L32p protein family Tmath_1337 PF02620 Large ribosomal RNA subunit accumulation protein YceD Tmath_1338 PF00871 Acetokinase family Tmath_1339 PF01515 Phosphate acetyl/butaryl transferase Tmath_1340 PF05636 HIGH Nucleotidyl Transferase Tmath_1341 PF07670 Nucleoside recognition Tmath_1343 PF01467 Cytidylyltransferase-like Tmath_1345 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_1346 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_1347 PF02645 Uncharacterised protein, DegV family COG1307 Tmath_1348 PF00270 DEAD/DEAH box helicase Tmath_1348 PF17191 RecG wedge domain Tmath_1348 PF00271 Helicase conserved C-terminal domain Tmath_1349 PF13684 Dihydroxyacetone kinase family Tmath_1349 PF02734 DAK2 domain Tmath_1350 PF03780 Asp23 family, cell envelope-related function Tmath_1351 PF00830 Ribosomal L28 family Tmath_1354 PF00834 Ribulose-phosphate 3 epimerase family Tmath_1355 PF03193 RsgA GTPase Tmath_1355 PF16745 RsgA N-terminal domain Tmath_1356 PF03793 PASTA domain Tmath_1356 PF00069 Protein kinase domain Tmath_1358 PF04055 Radical SAM superfamily Tmath_1359 PF01029 NusB family Tmath_1359 PF01189 16S rRNA methyltransferase RsmB/F Tmath_1360 PF04298 Putative neutral zinc metallopeptidase Tmath_1362 PF02911 Formyl transferase, C-terminal domain Tmath_1362 PF00551 Formyl transferase Tmath_1363 PF01327 Polypeptide deformylase Tmath_1364 PF00271 Helicase conserved C-terminal domain Tmath_1364 PF17764 3′ DNA-binding domain (3′BD) Tmath_1364 PF18074 Primosomal protein N C-terminal domain Tmath_1364 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Tmath_1364 PF04851 Type III restriction enzyme, res subunit Tmath_1365 PF02441 Flavoprotein Tmath_1365 PF04127 DNA / pantothenate metabolism flavoprotein Tmath_1366 PF01192 RNA polymerase Rpb6 Tmath_1367 PF00625 Guanylate kinase Tmath_1368 PF04025 Domain of unknown function (DUF370) Tmath_1369 PF03755 YicC-like family, N-terminal region Tmath_1369 PF08340 Domain of unknown function (DUF1732) Tmath_1370 PF01678 Diaminopimelate epimerase Tmath_1371 PF00083 Sugar (and other) transporter Tmath_1371 PF07690 Major Facilitator Superfamily Tmath_1375 PF09383 NIL domain Tmath_1375 PF00005 ABC transporter Tmath_1376 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1377 PF03180 NLPA lipoprotein Tmath_1379 PF01171 PP-loop family Tmath_1380 PF17785 PUA-like domain Tmath_1380 PF10672 S-adenosylmethionine-dependent methyltransferase Tmath_1381 PF01471 Putative peptidoglycan binding domain Tmath_1381 PF01510 N-acetylmuramoyl-L-alanine amidase Tmath_1382 PF00156 Phosphoribosyl transferase domain Tmath_1383 PF01180 Dihydroorotate dehydrogenase Tmath_1384 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_1385 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tmath_1386 PF01979 Amidohydrolase family Tmath_1387 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tmath_1387 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tmath_1388 PF00156 Phosphoribosyl transferase domain Tmath_1390 PF01479 S4 domain Tmath_1390 PF00849 RNA pseudouridylate synthase Tmath_1391 PF01252 Signal peptidase (SPase) II Tmath_1392 PF13302 Acetyltransferase (GNAT) domain Tmath_1400 PF00248 Aldo/keto reductase family Tmath_1402 PF00465 Iron-containing alcohol dehydrogenase Tmath_1403 PF00248 Aldo/keto reductase family Tmath_1405 PF01741 Large-conductance mechanosensitive channel, MscL Tmath_1407 PF04542 Sigma-70 region 2 Tmath_1407 PF08281 Sigma-70, region 4 Tmath_1410 PF04024 PspC domain Tmath_1414 PF01053 Cys/Met metabolism PLP-dependent enzyme Tmath_1416 PF18152 DAHP synthase ferredoxin-like domain Tmath_1416 PF00793 DAHP synthetase I family Tmath_1417 PF00290 Tryptophan synthase alpha chain Tmath_1418 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_1419 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Tmath_1420 PF00218 Indole-3-glycerol phosphate synthase Tmath_1421 PF00591 Glycosyl transferase family, a/b domain Tmath_1421 PF02885 Glycosyl transferase family, helical bundle domain Tmath_1422 PF00591 Glycosyl transferase family, a/b domain Tmath_1422 PF00117 Glutamine amidotransferase class-I Tmath_1422 PF02885 Glycosyl transferase family, helical bundle domain Tmath_1424 PF01910 Thiamine-binding protein Tmath_1425 PF01053 Cys/Met metabolism PLP-dependent enzyme Tmath_1426 PF01048 Phosphorylase superfamily Tmath_1427 PF01008 Initiation factor 2 subunit family Tmath_1428 PF00596 Class II Aldolase and Adducin N-terminal domain Tmath_1431 PF01979 Amidohydrolase family Tmath_1432 PF08264 Anticodon-binding domain of tRNA Tmath_1432 PF06827 Zinc finger found in FPG and IleRS Tmath_1432 PF00133 tRNA synthetases class I (I, L, M and V) Tmath_1434 PF05103 DivIVA protein Tmath_1435 PF17774 Putative RNA-binding domain in YlmH Tmath_1435 PF01479 S4 domain Tmath_1437 PF04472 Cell division protein SepF Tmath_1438 PF01168 Alanine racemase, N-terminal domain Tmath_1440 PF01042 Endoribonuclease L-PSP Tmath_1441 PF02595 Glycerate kinase family Tmath_1442 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_1445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tmath_1445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tmath_1446 PF02660 Glycerol-3-phosphate acyltransferase Tmath_1447 PF01926 50S ribosome-binding GTPase Tmath_1447 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tmath_1452 PF14045 YIEGIA protein Tmath_1455 PF01895 PhoU domain Tmath_1456 PF00005 ABC transporter Tmath_1458 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1459 PF12849 PBP superfamily domain Tmath_1460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1460 PF00512 His Kinase A (phospho-acceptor) domain Tmath_1460 PF16736 Single Cache-like Tmath_1460 PF00989 PAS fold Tmath_1461 PF00486 Transcriptional regulatory protein, C terminal Tmath_1461 PF00072 Response regulator receiver domain Tmath_1462 PF03477 ATP cone domain Tmath_1463 PF05239 PRC-barrel domain Tmath_1464 PF04545 Sigma-70, region 4 Tmath_1464 PF04542 Sigma-70 region 2 Tmath_1464 PF04539 Sigma-70 region 3 Tmath_1465 PF04545 Sigma-70, region 4 Tmath_1465 PF04542 Sigma-70 region 2 Tmath_1466 PF03419 Sporulation factor SpoIIGA Tmath_1467 PF12327 FtsZ family, C-terminal domain Tmath_1467 PF00091 Tubulin/FtsZ family, GTPase domain Tmath_1468 PF02491 SHS2 domain inserted in FTSA Tmath_1469 PF06947 Protein of unknown function (DUF1290) Tmath_1470 PF05949 Bacterial protein of unknown function (DUF881) Tmath_1472 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_1473 PF03033 Glycosyltransferase family 28 N-terminal domain Tmath_1473 PF04101 Glycosyltransferase family 28 C-terminal domain Tmath_1474 PF01098 Cell cycle protein Tmath_1475 PF02875 Mur ligase family, glutamate ligase domain Tmath_1475 PF08245 Mur ligase middle domain Tmath_1476 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Tmath_1476 PF00953 Glycosyl transferase family 4 Tmath_1477 PF08245 Mur ligase middle domain Tmath_1477 PF01225 Mur ligase family, catalytic domain Tmath_1477 PF02875 Mur ligase family, glutamate ligase domain Tmath_1478 PF08245 Mur ligase middle domain Tmath_1478 PF01225 Mur ligase family, catalytic domain Tmath_1478 PF02875 Mur ligase family, glutamate ligase domain Tmath_1479 PF03717 Penicillin-binding Protein dimerisation domain Tmath_1479 PF00905 Penicillin binding protein transpeptidase domain Tmath_1479 PF03793 PASTA domain Tmath_1481 PF01795 MraW methylase family Tmath_1482 PF02381 MraZ protein, putative antitoxin-like Tmath_1483 PF00675 Insulinase (Peptidase family M16) Tmath_1483 PF05193 Peptidase M16 inactive domain Tmath_1484 PF05193 Peptidase M16 inactive domain Tmath_1485 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Tmath_1486 PF01926 50S ribosome-binding GTPase Tmath_1486 PF06071 Protein of unknown function (DUF933) Tmath_1488 PF02568 Thiamine biosynthesis protein (ThiI) Tmath_1488 PF02926 THUMP domain Tmath_1489 PF00266 Aminotransferase class-V Tmath_1490 PF02583 Metal-sensitive transcriptional repressor Tmath_1493 PF04055 Radical SAM superfamily Tmath_1494 PF03099 Biotin/lipoate A/B protein ligase family Tmath_1495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tmath_1495 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1497 PF01381 Helix-turn-helix Tmath_1511 PF07508 Recombinase Tmath_1511 PF00239 Resolvase, N terminal domain Tmath_1511 PF13408 Recombinase zinc beta ribbon domain Tmath_1514 PF02127 Aminopeptidase I zinc metalloprotease (M18) Tmath_1515 PF00196 Bacterial regulatory proteins, luxR family Tmath_1515 PF00072 Response regulator receiver domain Tmath_1516 PF07730 Histidine kinase Tmath_1516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1516 PF05384 Sensor protein DegS Tmath_1518 PF04463 Protein of unknown function (DUF523) Tmath_1519 PF00488 MutS domain V Tmath_1519 PF01713 Smr domain Tmath_1520 PF01136 Peptidase family U32 Tmath_1520 PF12392 Collagenase Tmath_1522 PF03484 tRNA synthetase B5 domain Tmath_1522 PF03147 Ferredoxin-fold anticodon binding domain Tmath_1522 PF03483 B3/4 domain Tmath_1522 PF01588 Putative tRNA binding domain Tmath_1522 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Tmath_1523 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Tmath_1523 PF01409 tRNA synthetases class II core domain (F) Tmath_1524 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tmath_1524 PF00588 SpoU rRNA Methylase family Tmath_1525 PF00453 Ribosomal protein L20 Tmath_1526 PF01632 Ribosomal protein L35 Tmath_1527 PF00707 Translation initiation factor IF-3, C-terminal domain Tmath_1527 PF05198 Translation initiation factor IF-3, N-terminal domain Tmath_1528 PF01264 Chorismate synthase Tmath_1530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_1530 PF02824 TGS domain Tmath_1530 PF03129 Anticodon binding domain Tmath_1531 PF04286 Protein of unknown function (DUF445) Tmath_1534 PF00085 Thioredoxin Tmath_1535 PF01430 Hsp33 protein Tmath_1536 PF00313 'Cold-shock' DNA-binding domain Tmath_1537 PF02146 Sir2 family Tmath_1540 PF01106 NifU-like domain Tmath_1541 PF13185 GAF domain Tmath_1543 PF01790 Prolipoprotein diacylglyceryl transferase Tmath_1549 PF01546 Peptidase family M20/M25/M40 Tmath_1550 PF01238 Phosphomannose isomerase type I Tmath_1551 PF01048 Phosphorylase superfamily Tmath_1552 PF01784 NIF3 (NGG1p interacting factor 3) Tmath_1553 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Tmath_1554 PF00140 Sigma-70 factor, region 1.2 Tmath_1554 PF04542 Sigma-70 region 2 Tmath_1554 PF04539 Sigma-70 region 3 Tmath_1554 PF03979 Sigma-70 factor, region 1.1 Tmath_1554 PF04545 Sigma-70, region 4 Tmath_1555 PF10410 DnaB-helicase binding domain of primase Tmath_1555 PF08275 DNA primase catalytic core, N-terminal domain Tmath_1555 PF01807 CHC2 zinc finger Tmath_1556 PF13286 Phosphohydrolase-associated domain Tmath_1556 PF01966 HD domain Tmath_1557 PF03840 Preprotein translocase SecG subunit Tmath_1558 PF00113 Enolase, C-terminal TIM barrel domain Tmath_1558 PF03952 Enolase, N-terminal domain Tmath_1560 PF00121 Triosephosphate isomerase Tmath_1561 PF00162 Phosphoglycerate kinase Tmath_1562 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tmath_1562 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tmath_1563 PF04198 Putative sugar-binding domain Tmath_1564 PF04552 Sigma-54, DNA binding domain Tmath_1564 PF04963 Sigma-54 factor, core binding domain Tmath_1564 PF00309 Sigma-54 factor, Activator interacting domain (AID) Tmath_1565 PF00708 Acylphosphatase Tmath_1567 PF01475 Ferric uptake regulator family Tmath_1568 PF04294 VanW like protein Tmath_1569 PF10576 Iron-sulfur binding domain of endonuclease III Tmath_1569 PF00730 HhH-GPD superfamily base excision DNA repair protein Tmath_1569 PF00633 Helix-hairpin-helix motif Tmath_1570 PF08331 Domain of unknown function (DUF1730) Tmath_1575 PF03129 Anticodon binding domain Tmath_1575 PF02824 TGS domain Tmath_1575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_1577 PF00849 RNA pseudouridylate synthase Tmath_1578 PF00293 NUDIX domain Tmath_1578 PF13344 Haloacid dehalogenase-like hydrolase Tmath_1581 PF12002 MgsA AAA+ ATPase C terminal Tmath_1581 PF16193 AAA C-terminal domain Tmath_1581 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1582 PF02660 Glycerol-3-phosphate acyltransferase Tmath_1586 PF05958 tRNA (Uracil-5-)-methyltransferase Tmath_1586 PF01938 TRAM domain Tmath_1589 PF05067 Manganese containing catalase Tmath_1590 PF04073 Aminoacyl-tRNA editing domain Tmath_1591 PF02574 Homocysteine S-methyltransferase Tmath_1591 PF00809 Pterin binding enzyme Tmath_1591 PF02965 Vitamin B12 dependent methionine synthase, activation domain Tmath_1591 PF02310 B12 binding domain Tmath_1591 PF02607 B12 binding domain Tmath_1592 PF02219 Methylenetetrahydrofolate reductase Tmath_1592 PF02574 Homocysteine S-methyltransferase Tmath_1593 PF11897 Protein of unknown function (DUF3417) Tmath_1593 PF00343 Carbohydrate phosphorylase Tmath_1594 PF00342 Phosphoglucose isomerase Tmath_1595 PF00881 Nitroreductase family Tmath_1597 PF00586 AIR synthase related protein, N-terminal domain Tmath_1597 PF02769 AIR synthase related protein, C-terminal domain Tmath_1598 PF01924 Hydrogenase formation hypA family Tmath_1599 PF01455 HupF/HypC family Tmath_1600 PF00708 Acylphosphatase Tmath_1600 PF07503 HypF finger Tmath_1600 PF17788 HypF Kae1-like domain Tmath_1600 PF01300 Telomere recombination Tmath_1601 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tmath_1602 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Tmath_1603 PF12838 4Fe-4S dicluster domain Tmath_1604 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Tmath_1604 PF00374 Nickel-dependent hydrogenase Tmath_1606 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tmath_1607 PF00146 NADH dehydrogenase Tmath_1608 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tmath_1608 PF00361 Proton-conducting membrane transporter Tmath_1608 PF13244 Domain of unknown function (DUF4040) Tmath_1610 PF00682 HMGL-like Tmath_1610 PF08502 LeuA allosteric (dimerisation) domain Tmath_1611 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Tmath_1612 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1613 PF00005 ABC transporter Tmath_1613 PF00571 CBS domain Tmath_1614 PF03600 Citrate transporter Tmath_1614 PF02080 TrkA-C domain Tmath_1615 PF01554 MatE Tmath_1617 PF01938 TRAM domain Tmath_1617 PF05958 tRNA (Uracil-5-)-methyltransferase Tmath_1619 PF00391 PEP-utilising enzyme, mobile domain Tmath_1619 PF00224 Pyruvate kinase, barrel domain Tmath_1619 PF02887 Pyruvate kinase, alpha/beta domain Tmath_1620 PF00365 Phosphofructokinase Tmath_1622 PF14579 Helix-hairpin-helix motif Tmath_1622 PF02811 PHP domain Tmath_1622 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tmath_1622 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tmath_1623 PF03061 Thioesterase superfamily Tmath_1623 PF00571 CBS domain Tmath_1623 PF07085 DRTGG domain Tmath_1623 PF00392 Bacterial regulatory proteins, gntR family Tmath_1624 PF00381 PTS HPr component phosphorylation site Tmath_1625 PF14527 WhiA LAGLIDADG-like domain Tmath_1625 PF10298 WhiA N-terminal LAGLIDADG-like domain Tmath_1625 PF02650 WhiA C-terminal HTH domain Tmath_1627 PF00128 Alpha amylase, catalytic domain Tmath_1627 PF02903 Alpha amylase, N-terminal ig-like domain Tmath_1628 PF13464 Domain of unknown function (DUF4115) Tmath_1631 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1632 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1633 PF13416 Bacterial extracellular solute-binding protein Tmath_1634 PF00128 Alpha amylase, catalytic domain Tmath_1634 PF01833 IPT/TIG domain Tmath_1634 PF02806 Alpha amylase, C-terminal all-beta domain Tmath_1634 PF00686 Starch binding domain Tmath_1635 PF01933 Uncharacterised protein family UPF0052 Tmath_1636 PF03668 P-loop ATPase protein family Tmath_1637 PF02811 PHP domain Tmath_1638 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tmath_1638 PF01565 FAD binding domain Tmath_1643 PF00403 Heavy-metal-associated domain Tmath_1647 PF00403 Heavy-metal-associated domain Tmath_1648 PF09335 SNARE associated Golgi protein Tmath_1649 PF02001 Protein of unknown function DUF134 Tmath_1650 PF06463 Molybdenum Cofactor Synthesis C Tmath_1650 PF04055 Radical SAM superfamily Tmath_1652 PF12679 ABC-2 family transporter protein Tmath_1653 PF00005 ABC transporter Tmath_1655 PF01980 tRNA-methyltransferase O Tmath_1656 PF00005 ABC transporter Tmath_1657 PF01032 FecCD transport family Tmath_1658 PF01497 Periplasmic binding protein Tmath_1659 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1659 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tmath_1660 PF06968 Biotin and Thiamin Synthesis associated domain Tmath_1660 PF04055 Radical SAM superfamily Tmath_1661 PF12706 Beta-lactamase superfamily domain Tmath_1663 PF10609 NUBPL iron-transfer P-loop NTPase Tmath_1664 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Tmath_1670 PF01861 Branched-chain polyamine synthase A C-terminal domain Tmath_1671 PF00356 Bacterial regulatory proteins, lacI family Tmath_1672 PF00294 pfkB family carbohydrate kinase Tmath_1673 PF08244 Glycosyl hydrolases family 32 C terminal Tmath_1673 PF00251 Glycosyl hydrolases family 32 N-terminal domain Tmath_1674 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1675 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1676 PF01547 Bacterial extracellular solute-binding protein Tmath_1680 PF03793 PASTA domain Tmath_1680 PF03717 Penicillin-binding Protein dimerisation domain Tmath_1680 PF00905 Penicillin binding protein transpeptidase domain Tmath_1682 PF00923 Transaldolase/Fructose-6-phosphate aldolase Tmath_1683 PF13685 Iron-containing alcohol dehydrogenase Tmath_1684 PF00392 Bacterial regulatory proteins, gntR family Tmath_1685 PF00596 Class II Aldolase and Adducin N-terminal domain Tmath_1686 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_1686 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_1687 PF02610 L-arabinose isomerase Tmath_1687 PF11762 L-arabinose isomerase C-terminal domain Tmath_1689 PF07944 Beta-L-arabinofuranosidase, GH127 Tmath_1690 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Tmath_1691 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Tmath_1692 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1693 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1694 PF13416 Bacterial extracellular solute-binding protein Tmath_1695 PF16369 C-terminal lipocalin-like domain Tmath_1695 PF04616 Glycosyl hydrolases family 43 Tmath_1696 PF01263 Aldose 1-epimerase Tmath_1699 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1700 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1701 PF01547 Bacterial extracellular solute-binding protein Tmath_1702 PF01074 Glycosyl hydrolases family 38 N-terminal domain Tmath_1702 PF07748 Glycosyl hydrolases family 38 C-terminal domain Tmath_1702 PF09261 Alpha mannosidase middle domain Tmath_1703 PF12833 Helix-turn-helix domain Tmath_1703 PF02311 AraC-like ligand binding domain Tmath_1704 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tmath_1704 PF00703 Glycosyl hydrolases family 2 Tmath_1704 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tmath_1704 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Tmath_1704 PF16355 Domain of unknown function (DUF4982) Tmath_1705 PF16874 Glycosyl hydrolase family 36 C-terminal domain Tmath_1705 PF16875 Glycosyl hydrolase family 36 N-terminal domain Tmath_1706 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1707 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1708 PF13416 Bacterial extracellular solute-binding protein Tmath_1710 PF01325 Iron dependent repressor, N-terminal DNA binding domain Tmath_1710 PF00480 ROK family Tmath_1711 PF16363 GDP-mannose 4,6 dehydratase Tmath_1712 PF00288 GHMP kinases N terminal domain Tmath_1712 PF10509 Galactokinase galactose-binding signature Tmath_1712 PF08544 GHMP kinases C terminal Tmath_1713 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tmath_1713 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tmath_1715 PF13802 Galactose mutarotase-like Tmath_1715 PF16338 Domain of unknown function (DUF4968) Tmath_1715 PF17137 Domain of unknown function (DUF5110) Tmath_1715 PF01055 Glycosyl hydrolases family 31 Tmath_1716 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Tmath_1717 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Tmath_1718 PF03480 Bacterial extracellular solute-binding protein, family 7 Tmath_1721 PF02614 Glucuronate isomerase Tmath_1722 PF01232 Mannitol dehydrogenase Rossmann domain Tmath_1722 PF08125 Mannitol dehydrogenase C-terminal domain Tmath_1723 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tmath_1723 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_1724 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_1724 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_1725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_1725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_1727 PF08220 DeoR-like helix-turn-helix domain Tmath_1727 PF00455 DeoR C terminal sensor domain Tmath_1728 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_1728 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_1731 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_1731 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_1732 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_1732 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_1733 PF00356 Bacterial regulatory proteins, lacI family Tmath_1739 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Tmath_1739 PF01871 AMMECR1 Tmath_1741 PF13193 AMP-binding enzyme C-terminal domain Tmath_1741 PF00501 AMP-binding enzyme Tmath_1742 PF00480 ROK family Tmath_1743 PF02811 PHP domain Tmath_1744 PF02603 HPr Serine kinase N terminus Tmath_1744 PF07475 HPr Serine kinase C-terminal domain Tmath_1745 PF02237 Biotin protein ligase C terminal domain Tmath_1745 PF03099 Biotin/lipoate A/B protein ligase family Tmath_1745 PF08279 HTH domain Tmath_1747 PF01541 GIY-YIG catalytic domain Tmath_1747 PF08459 UvrC Helix-hairpin-helix N-terminal Tmath_1747 PF02151 UvrB/uvrC motif Tmath_1748 PF00905 Penicillin binding protein transpeptidase domain Tmath_1749 PF01098 Cell cycle protein Tmath_1750 PF16697 Inner membrane component of T3SS, cytoplasmic domain Tmath_1751 PF17760 UvrA interaction domain Tmath_1751 PF17755 UvrA DNA-binding domain Tmath_1752 PF04851 Type III restriction enzyme, res subunit Tmath_1752 PF17757 UvrB interaction domain Tmath_1752 PF02151 UvrB/uvrC motif Tmath_1752 PF12344 Ultra-violet resistance protein B Tmath_1752 PF00271 Helicase conserved C-terminal domain Tmath_1753 PF04029 2-phosphosulpholactate phosphatase Tmath_1754 PF00595 PDZ domain Tmath_1755 PF03572 Peptidase family S41 Tmath_1755 PF01471 Putative peptidoglycan binding domain Tmath_1755 PF17820 PDZ domain Tmath_1756 PF01551 Peptidase family M23 Tmath_1756 PF04225 Opacity-associated protein A LysM-like domain Tmath_1757 PF02687 FtsX-like permease family Tmath_1757 PF18075 FtsX extracellular domain Tmath_1758 PF00005 ABC transporter Tmath_1759 PF17853 GGDEF-like domain Tmath_1759 PF13556 PucR C-terminal helix-turn-helix domain Tmath_1759 PF05651 Putative sugar diacid recognition Tmath_1760 PF00005 ABC transporter Tmath_1760 PF03459 TOBE domain Tmath_1760 PF17912 MalK OB fold domain Tmath_1763 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tmath_1763 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tmath_1764 PF01386 Ribosomal L25p family Tmath_1764 PF14693 Ribosomal protein TL5, C-terminal domain Tmath_1765 PF13419 Haloacid dehalogenase-like hydrolase Tmath_1769 PF02491 SHS2 domain inserted in FTSA Tmath_1770 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_1771 PF01434 Peptidase family M41 Tmath_1771 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1771 PF17862 AAA+ lid domain Tmath_1774 PF03610 PTS system fructose IIA component Tmath_1774 PF05524 PEP-utilising enzyme, N-terminal Tmath_1774 PF00381 PTS HPr component phosphorylation site Tmath_1774 PF00391 PEP-utilising enzyme, mobile domain Tmath_1775 PF02734 DAK2 domain Tmath_1776 PF02733 Dak1 domain Tmath_1777 PF02954 Bacterial regulatory protein, Fis family Tmath_1777 PF00989 PAS fold Tmath_1777 PF00158 Sigma-54 interaction domain Tmath_1779 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1779 PF04324 BFD-like [2Fe-2S] binding domain Tmath_1780 PF01266 FAD dependent oxidoreductase Tmath_1781 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_1781 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_1782 PF00230 Major intrinsic protein Tmath_1783 PF04309 Glycerol-3-phosphate responsive antiterminator Tmath_1784 PF01522 Polysaccharide deacetylase Tmath_1787 PF00483 Nucleotidyl transferase Tmath_1789 PF01244 Membrane dipeptidase (Peptidase family M19) Tmath_1791 PF00464 Serine hydroxymethyltransferase Tmath_1792 PF01502 Phosphoribosyl-AMP cyclohydrolase Tmath_1792 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tmath_1793 PF00977 Histidine biosynthesis protein Tmath_1794 PF00977 Histidine biosynthesis protein Tmath_1795 PF00117 Glutamine amidotransferase class-I Tmath_1796 PF00475 Imidazoleglycerol-phosphate dehydratase Tmath_1797 PF00155 Aminotransferase class I and II Tmath_1798 PF00815 Histidinol dehydrogenase Tmath_1799 PF01634 ATP phosphoribosyltransferase Tmath_1800 PF13393 Histidyl-tRNA synthetase Tmath_1806 PF00005 ABC transporter Tmath_1807 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Tmath_1807 PF06165 Glycosyltransferase family 36 Tmath_1807 PF10091 Putative glucoamylase Tmath_1808 PF01189 16S rRNA methyltransferase RsmB/F Tmath_1808 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Tmath_1808 PF17126 RsmF rRNA methyltransferase first C-terminal domain Tmath_1809 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_1809 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_1810 PF00561 alpha/beta hydrolase fold Tmath_1811 PF01053 Cys/Met metabolism PLP-dependent enzyme Tmath_1812 PF03447 Homoserine dehydrogenase, NAD binding domain Tmath_1812 PF00742 Homoserine dehydrogenase Tmath_1812 PF01842 ACT domain Tmath_1814 PF02954 Bacterial regulatory protein, Fis family Tmath_1814 PF00072 Response regulator receiver domain Tmath_1814 PF00158 Sigma-54 interaction domain Tmath_1815 PF00072 Response regulator receiver domain Tmath_1815 PF00158 Sigma-54 interaction domain Tmath_1815 PF02954 Bacterial regulatory protein, Fis family Tmath_1816 PF00211 Adenylate and Guanylate cyclase catalytic domain Tmath_1816 PF00072 Response regulator receiver domain Tmath_1819 PF13188 PAS domain Tmath_1819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1819 PF08448 PAS fold Tmath_1819 PF00072 Response regulator receiver domain Tmath_1819 PF00512 His Kinase A (phospho-acceptor) domain Tmath_1820 PF01964 Radical SAM ThiC family Tmath_1822 PF02779 Transketolase, pyrimidine binding domain Tmath_1822 PF02780 Transketolase, C-terminal domain Tmath_1823 PF00456 Transketolase, thiamine diphosphate binding domain Tmath_1824 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tmath_1824 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Tmath_1825 PF03808 Glycosyl transferase WecB/TagA/CpsF family Tmath_1829 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Tmath_1831 PF00842 Alanine racemase, C-terminal domain Tmath_1831 PF01168 Alanine racemase, N-terminal domain Tmath_1833 PF01256 Carbohydrate kinase Tmath_1833 PF03853 YjeF-related protein N-terminus Tmath_1834 PF01648 4'-phosphopantetheinyl transferase superfamily Tmath_1838 PF03063 Prismane/CO dehydrogenase family Tmath_1842 PF02735 Ku70/Ku80 beta-barrel domain Tmath_1843 PF01068 ATP dependent DNA ligase domain Tmath_1844 PF01894 Uncharacterised protein family UPF0047 Tmath_1856 PF00665 Integrase core domain Tmath_1856 PF02796 Helix-turn-helix domain of resolvase Tmath_1861 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tmath_1861 PF11867 Domain of unknown function (DUF3387) Tmath_1861 PF18766 SWI2/SNF2 ATPase Tmath_1863 PF01420 Type I restriction modification DNA specificity domain Tmath_1864 PF02384 N-6 DNA Methylase Tmath_1867 PF01380 SIS domain Tmath_1868 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tmath_1868 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tmath_1868 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tmath_1868 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tmath_1869 PF01553 Acyltransferase Tmath_1871 PF01515 Phosphate acetyl/butaryl transferase Tmath_1878 PF00871 Acetokinase family Tmath_1879 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tmath_1879 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tmath_1880 PF01515 Phosphate acetyl/butaryl transferase Tmath_1881 PF00871 Acetokinase family Tmath_1883 PF02457 DisA bacterial checkpoint controller nucleotide-binding Tmath_1887 PF13419 Haloacid dehalogenase-like hydrolase Tmath_1888 PF01520 N-acetylmuramoyl-L-alanine amidase Tmath_1888 PF08239 Bacterial SH3 domain Tmath_1889 PF01476 LysM domain Tmath_1889 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Tmath_1890 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1894 PF02511 Thymidylate synthase complementing protein Tmath_1896 PF13722 5TM C-terminal transporter carbon starvation CstA Tmath_1896 PF02554 Carbon starvation protein CstA Tmath_1898 PF00380 Ribosomal protein S9/S16 Tmath_1899 PF00572 Ribosomal protein L13 Tmath_1900 PF01416 tRNA pseudouridine synthase Tmath_1901 PF02361 Cobalt transport protein Tmath_1902 PF00005 ABC transporter Tmath_1903 PF00005 ABC transporter Tmath_1904 PF01196 Ribosomal protein L17 Tmath_1905 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tmath_1905 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tmath_1905 PF01000 RNA polymerase Rpb3/RpoA insert domain Tmath_1906 PF00163 Ribosomal protein S4/S9 N-terminal domain Tmath_1906 PF01479 S4 domain Tmath_1907 PF00411 Ribosomal protein S11 Tmath_1908 PF00416 Ribosomal protein S13/S18 Tmath_1909 PF00444 Ribosomal protein L36 Tmath_1910 PF01176 Translation initiation factor 1A / IF-1 Tmath_1912 PF00557 Metallopeptidase family M24 Tmath_1913 PF05191 Adenylate kinase, active site lid Tmath_1914 PF00344 SecY translocase Tmath_1915 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Tmath_1916 PF03719 Ribosomal protein S5, C-terminal domain Tmath_1916 PF00333 Ribosomal protein S5, N-terminal domain Tmath_1917 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Tmath_1918 PF00347 Ribosomal protein L6 Tmath_1919 PF00410 Ribosomal protein S8 Tmath_1920 PF00253 Ribosomal protein S14p/S29e Tmath_1921 PF00673 ribosomal L5P family C-terminus Tmath_1921 PF00281 Ribosomal protein L5 Tmath_1922 PF00467 KOW motif Tmath_1922 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Tmath_1923 PF00238 Ribosomal protein L14p/L23e Tmath_1924 PF00366 Ribosomal protein S17 Tmath_1925 PF00831 Ribosomal L29 protein Tmath_1926 PF00252 Ribosomal protein L16p/L10e Tmath_1927 PF07650 KH domain Tmath_1927 PF00189 Ribosomal protein S3, C-terminal domain Tmath_1928 PF00237 Ribosomal protein L22p/L17e Tmath_1929 PF00203 Ribosomal protein S19 Tmath_1930 PF03947 Ribosomal Proteins L2, C-terminal domain Tmath_1930 PF00181 Ribosomal Proteins L2, RNA binding domain Tmath_1931 PF00276 Ribosomal protein L23 Tmath_1932 PF00573 Ribosomal protein L4/L1 family Tmath_1933 PF00297 Ribosomal protein L3 Tmath_1934 PF00338 Ribosomal protein S10p/S20e Tmath_1935 PF03143 Elongation factor Tu C-terminal domain Tmath_1935 PF00009 Elongation factor Tu GTP binding domain Tmath_1935 PF03144 Elongation factor Tu domain 2 Tmath_1936 PF04542 Sigma-70 region 2 Tmath_1936 PF08281 Sigma-70, region 4 Tmath_1937 PF05991 YacP-like NYN domain Tmath_1938 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tmath_1938 PF00588 SpoU rRNA Methylase family Tmath_1939 PF00636 Ribonuclease III domain Tmath_1940 PF09190 DALR domain Tmath_1940 PF01406 tRNA synthetases class I (C) catalytic domain Tmath_1941 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_1941 PF06426 Serine acetyltransferase, N-terminal Tmath_1942 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tmath_1944 PF03129 Anticodon binding domain Tmath_1944 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_1944 PF04073 Aminoacyl-tRNA editing domain Tmath_1945 PF02542 YgbB family Tmath_1947 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tmath_1950 PF18073 Rubredoxin metal binding domain Tmath_1951 PF01566 Natural resistance-associated macrophage protein Tmath_1952 PF02806 Alpha amylase, C-terminal all-beta domain Tmath_1952 PF01833 IPT/TIG domain Tmath_1952 PF00686 Starch binding domain Tmath_1952 PF00128 Alpha amylase, catalytic domain Tmath_1953 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1954 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1955 PF13416 Bacterial extracellular solute-binding protein Tmath_1957 PF07724 AAA domain (Cdc48 subfamily) Tmath_1957 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1957 PF02861 Clp amino terminal domain, pathogenicity island component Tmath_1957 PF10431 C-terminal, D2-small domain, of ClpB protein Tmath_1957 PF17871 AAA lid domain Tmath_1958 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Tmath_1959 PF02151 UvrB/uvrC motif Tmath_1960 PF17727 CtsR C-terminal dimerization domain Tmath_1960 PF05848 CtsR N-terminal HTH domain Tmath_1962 PF00390 Malic enzyme, N-terminal domain Tmath_1962 PF03949 Malic enzyme, NAD binding domain Tmath_1963 PF03144 Elongation factor Tu domain 2 Tmath_1963 PF03764 Elongation factor G, domain IV Tmath_1963 PF00679 Elongation factor G C-terminus Tmath_1963 PF14492 Elongation Factor G, domain II Tmath_1963 PF00009 Elongation factor Tu GTP binding domain Tmath_1964 PF05524 PEP-utilising enzyme, N-terminal Tmath_1964 PF00391 PEP-utilising enzyme, mobile domain Tmath_1964 PF02896 PEP-utilising enzyme, TIM barrel domain Tmath_1965 PF00990 Diguanylate cyclase, GGDEF domain Tmath_1965 PF00072 Response regulator receiver domain Tmath_1966 PF02867 Ribonucleotide reductase, barrel domain Tmath_1966 PF03477 ATP cone domain Tmath_1966 PF00317 Ribonucleotide reductase, all-alpha domain Tmath_1968 PF00202 Aminotransferase class-III Tmath_1969 PF05979 Bacterial protein of unknown function (DUF896) Tmath_1971 PF00326 Prolyl oligopeptidase family Tmath_1971 PF07676 WD40-like Beta Propeller Repeat Tmath_1973 PF00005 ABC transporter Tmath_1973 PF00664 ABC transporter transmembrane region Tmath_1975 PF00005 ABC transporter Tmath_1992 PF17746 SfsA N-terminal OB domain Tmath_1992 PF03749 Sugar fermentation stimulation protein RE domain Tmath_1993 PF01242 6-pyruvoyl tetrahydropterin synthase Tmath_1994 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tmath_1995 PF00809 Pterin binding enzyme Tmath_1996 PF01227 GTP cyclohydrolase I Tmath_1997 PF00152 tRNA synthetases class II (D, K and N) Tmath_1997 PF01336 OB-fold nucleic acid binding domain Tmath_1998 PF01272 Transcription elongation factor, GreA/GreB, C-term Tmath_1998 PF03449 Transcription elongation factor, N-terminal Tmath_1999 PF00202 Aminotransferase class-III Tmath_2003 PF05504 Spore germination B3/ GerAC like, C-terminal Tmath_2004 PF03323 Bacillus/Clostridium GerA spore germination protein Tmath_2005 PF03845 Spore germination protein Tmath_2006 PF03309 Type III pantothenate kinase Tmath_2007 PF12822 ECF transporter, substrate-specific component Tmath_2008 PF00364 Biotin-requiring enzyme Tmath_2010 PF01039 Carboxyl transferase domain Tmath_2012 PF01268 Formate--tetrahydrofolate ligase Tmath_2013 PF00512 His Kinase A (phospho-acceptor) domain Tmath_2013 PF00989 PAS fold Tmath_2013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_2014 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_2014 PF06480 FtsH Extracellular Tmath_2014 PF17862 AAA+ lid domain Tmath_2014 PF01434 Peptidase family M41 Tmath_2016 PF01171 PP-loop family Tmath_2016 PF11734 TilS substrate C-terminal domain Tmath_2017 PF07228 Stage II sporulation protein E (SpoIIE) Tmath_2018 PF01209 ubiE/COQ5 methyltransferase family Tmath_2019 PF00892 EamA-like transporter family Tmath_2023 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tmath_2023 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Tmath_2023 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_2023 PF10371 Domain of unknown function Tmath_2023 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tmath_2026 PF01520 N-acetylmuramoyl-L-alanine amidase Tmath_2027 PF03707 Bacterial signalling protein N terminal repeat Tmath_2027 PF00990 Diguanylate cyclase, GGDEF domain Tmath_2027 PF00563 EAL domain Tmath_2028 PF00266 Aminotransferase class-V Tmath_2031 PF00403 Heavy-metal-associated domain Tmath_2032 PF00403 Heavy-metal-associated domain Tmath_2033 PF01022 Bacterial regulatory protein, arsR family Tmath_2036 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_2041 PF01370 NAD dependent epimerase/dehydratase family Tmath_2042 PF02368 Bacterial Ig-like domain (group 2) Tmath_2043 PF01752 Collagenase Tmath_2043 PF08453 Peptidase family M9 N-terminal Tmath_2043 PF18496 Collagenase G catalytic helper subdomain Tmath_2049 PF01761 3-dehydroquinate synthase Tmath_2049 PF02541 Ppx/GppA phosphatase family Tmath_2050 PF00575 S1 RNA binding domain Tmath_2053 PF02833 DHHA2 domain Tmath_2053 PF01368 DHH family Tmath_2053 PF00571 CBS domain Tmath_2053 PF07085 DRTGG domain Tmath_2056 PF07873 YabP family Tmath_2057 PF08486 Stage II sporulation protein Tmath_2058 PF01479 S4 domain Tmath_2059 PF00216 Bacterial DNA-binding protein Tmath_2060 PF03819 MazG nucleotide pyrophosphohydrolase domain Tmath_2060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_2062 PF05977 Transmembrane secretion effector Tmath_2063 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tmath_2063 PF01926 50S ribosome-binding GTPase Tmath_2064 PF00206 Lyase Tmath_2064 PF10415 Fumarase C C-terminus Tmath_2065 PF06397 Desulfoferrodoxin, N-terminal domain Tmath_2065 PF01880 Desulfoferrodoxin Tmath_2068 PF02424 ApbE family Tmath_2069 PF00348 Polyprenyl synthetase Tmath_2072 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_2073 PF00300 Histidine phosphatase superfamily (branch 1) Tmath_2074 PF00654 Voltage gated chloride channel Tmath_2075 PF00689 Cation transporting ATPase, C-terminus Tmath_2075 PF00690 Cation transporter/ATPase, N-terminus Tmath_2078 PF00005 ABC transporter Tmath_2079 PF00392 Bacterial regulatory proteins, gntR family Tmath_2083 PF00206 Lyase Tmath_2083 PF14698 Argininosuccinate lyase C-terminal Tmath_2084 PF00764 Arginosuccinate synthase Tmath_2085 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tmath_2085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tmath_2085 PF02142 MGS-like domain Tmath_2086 PF00117 Glutamine amidotransferase class-I Tmath_2086 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tmath_2087 PF00202 Aminotransferase class-III Tmath_2088 PF00696 Amino acid kinase family Tmath_2089 PF01960 ArgJ family Tmath_2090 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tmath_2090 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tmath_2093 PF00465 Iron-containing alcohol dehydrogenase Tmath_2094 PF08240 Alcohol dehydrogenase GroES-like domain Tmath_2094 PF00107 Zinc-binding dehydrogenase Tmath_2095 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_2095 PF00175 Oxidoreductase NAD-binding domain Tmath_2096 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_2096 PF13247 4Fe-4S dicluster domain Tmath_2096 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tmath_2097 PF02811 PHP domain Tmath_2097 PF14791 DNA polymerase beta thumb Tmath_2097 PF14716 Helix-hairpin-helix domain Tmath_2103 PF00689 Cation transporting ATPase, C-terminus Tmath_2103 PF00690 Cation transporter/ATPase, N-terminus Tmath_2104 PF01569 PAP2 superfamily Tmath_2105 PF09515 Thiamine transporter protein (Thia_YuaJ) Tmath_2106 PF00664 ABC transporter transmembrane region Tmath_2106 PF00005 ABC transporter Tmath_2107 PF00005 ABC transporter Tmath_2107 PF00664 ABC transporter transmembrane region Tmath_2108 PF01047 MarR family Tmath_2109 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Tmath_2109 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tmath_2110 PF00171 Aldehyde dehydrogenase family Tmath_2110 PF00465 Iron-containing alcohol dehydrogenase Tmath_2112 PF00248 Aldo/keto reductase family Tmath_2113 PF01180 Dihydroorotate dehydrogenase Tmath_2114 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tmath_2115 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_2116 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_2117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_2117 PF00005 ABC transporter Tmath_2118 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_2118 PF00005 ABC transporter Tmath_2120 PF00750 tRNA synthetases class I (R) Tmath_2120 PF05746 DALR anticodon binding domain Tmath_2120 PF03485 Arginyl tRNA synthetase N terminal domain Tmath_2122 PF07478 D-ala D-ala ligase C-terminus Tmath_2122 PF01820 D-ala D-ala ligase N-terminus Tmath_2123 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_2124 PF03413 Peptidase propeptide and YPEB domain Tmath_2124 PF14620 YpeB sporulation Tmath_2125 PF01471 Putative peptidoglycan binding domain Tmath_2125 PF07486 Cell Wall Hydrolase Tmath_2126 PF09551 Stage II sporulation protein R (spore_II_R) Tmath_2128 PF03845 Spore germination protein Tmath_2129 PF03323 Bacillus/Clostridium GerA spore germination protein Tmath_2132 PF07729 FCD domain Tmath_2132 PF00392 Bacterial regulatory proteins, gntR family Tmath_2133 PF08544 GHMP kinases C terminal Tmath_2133 PF00288 GHMP kinases N terminal domain Tmath_2134 PF01476 LysM domain Tmath_2135 PF06257 Biofilm formation stimulator VEG Tmath_2136 PF05582 YabG peptidase U57 Tmath_2137 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Tmath_2137 PF15714 Stage V sporulation protein T C-terminal, transcription factor Tmath_2139 PF02559 CarD-like/TRCF domain Tmath_2139 PF17757 UvrB interaction domain Tmath_2139 PF03461 TRCF domain Tmath_2139 PF00271 Helicase conserved C-terminal domain Tmath_2139 PF00270 DEAD/DEAH box helicase Tmath_2141 PF01195 Peptidyl-tRNA hydrolase Tmath_2142 PF13180 PDZ domain Tmath_2143 PF00989 PAS fold Tmath_2143 PF00512 His Kinase A (phospho-acceptor) domain Tmath_2143 PF18698 Histidine kinase sensor domain Tmath_2143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_2143 PF00672 HAMP domain Tmath_2144 PF00486 Transcriptional regulatory protein, C terminal Tmath_2144 PF00072 Response regulator receiver domain Tmath_2145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tmath_2145 PF14572 Phosphoribosyl synthetase-associated domain Tmath_2146 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_2146 PF12804 MobA-like NTP transferase domain Tmath_2147 PF04026 SpoVG Tmath_2148 PF09182 Bacterial purine repressor, N-terminal Tmath_2148 PF00156 Phosphoribosyl transferase domain Tmath_2149 PF01225 Mur ligase family, catalytic domain Tmath_2149 PF02875 Mur ligase family, glutamate ligase domain Tmath_2149 PF08245 Mur ligase middle domain Tmath_2155 PF00011 Hsp20/alpha crystallin family Tmath_2158 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_2158 PF02378 Phosphotransferase system, EIIC Tmath_2159 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_2159 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_2160 PF00294 pfkB family carbohydrate kinase Tmath_2161 PF00455 DeoR C terminal sensor domain Tmath_2161 PF08220 DeoR-like helix-turn-helix domain Tmath_2162 PF00395 S-layer homology domain Tmath_2165 PF08239 Bacterial SH3 domain Tmath_2165 PF00069 Protein kinase domain Tmath_2168 PF06418 CTP synthase N-terminus Tmath_2168 PF00117 Glutamine amidotransferase class-I Tmath_2170 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tmath_2170 PF10996 Beta-Casp domain Tmath_2170 PF00753 Metallo-beta-lactamase superfamily Tmath_2173 PF01842 ACT domain Tmath_2173 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_2173 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_2174 PF00266 Aminotransferase class-V Tmath_2176 PF03572 Peptidase family S41 Tmath_2176 PF01471 Putative peptidoglycan binding domain Tmath_2176 PF17820 PDZ domain Tmath_2177 PF08544 GHMP kinases C terminal Tmath_2177 PF00288 GHMP kinases N terminal domain Tmath_2178 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_2179 PF01842 ACT domain Tmath_2179 PF00742 Homoserine dehydrogenase Tmath_2179 PF03447 Homoserine dehydrogenase, NAD binding domain Tmath_2181 PF13520 Amino acid permease Tmath_2182 PF00753 Metallo-beta-lactamase superfamily Tmath_2183 PF09827 CRISPR associated protein Cas2 Tmath_2184 PF01867 CRISPR associated protein Cas1 Tmath_2196 PF18019 HD domain Tmath_2196 PF00270 DEAD/DEAH box helicase Tmath_2196 PF18395 Cas3 C-terminal domain Tmath_2203 PF01592 NifU-like N terminal domain Tmath_2204 PF00266 Aminotransferase class-V Tmath_2206 PF01458 Uncharacterized protein family (UPF0051) Tmath_2207 PF00005 ABC transporter Tmath_2208 PF00166 Chaperonin 10 Kd subunit Tmath_2209 PF00462 Glutaredoxin Tmath_2212 PF01479 S4 domain Tmath_2212 PF00579 tRNA synthetases class I (W and Y) Tmath_2213 PF02590 Predicted SPOUT methyltransferase Tmath_2214 PF02590 Predicted SPOUT methyltransferase Tmath_2216 PF13180 PDZ domain Tmath_2217 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_2221 PF00512 His Kinase A (phospho-acceptor) domain Tmath_2221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_2221 PF00672 HAMP domain Tmath_2221 PF13426 PAS domain Tmath_2222 PF00072 Response regulator receiver domain Tmath_2222 PF00486 Transcriptional regulatory protein, C terminal Tmath_2224 PF01551 Peptidase family M23 Tmath_2224 PF01476 LysM domain Tmath_2224 PF08525 Opacity-associated protein A N-terminal motif Tmath_2226 PF00308 Bacterial dnaA protein Tmath_2226 PF08299 Bacterial dnaA protein helix-turn-helix Tmath_2227 PF01433 Peptidase family M1 domain Tmath_2227 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Tmath_2227 PF11940 Domain of unknown function (DUF3458) Ig-like fold Tmath_2229 PF13567 Domain of unknown function (DUF4131) Tmath_2229 PF00753 Metallo-beta-lactamase superfamily Tmath_2229 PF03772 Competence protein Tmath_2231 PF00709 Adenylosuccinate synthetase Tmath_2233 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_2233 PF02743 Cache domain Tmath_2233 PF00672 HAMP domain Tmath_2235 PF01432 Peptidase family M3 Tmath_2235 PF08439 Oligopeptidase F Tmath_2237 PF00209 Sodium:neurotransmitter symporter family Tmath_2240 PF02417 Chromate transporter Tmath_2241 PF01813 ATP synthase subunit D Tmath_2242 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_2242 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_2243 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_2243 PF16886 ATPsynthase alpha/beta subunit N-term extension Tmath_2243 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_2244 PF01990 ATP synthase (F/14-kDa) subunit Tmath_2245 PF01992 ATP synthase (C/AC39) subunit Tmath_2246 PF01991 ATP synthase (E/31 kDa) subunit Tmath_2247 PF00137 ATP synthase subunit C Tmath_2248 PF01496 V-type ATPase 116kDa subunit family Tmath_2250 PF00860 Permease family Tmath_2258 PF13545 Crp-like helix-turn-helix domain Tmath_2258 PF00027 Cyclic nucleotide-binding domain Tmath_2259 PF00772 DnaB-like helicase N terminal domain Tmath_2259 PF03796 DnaB-like helicase C terminal domain Tmath_2260 PF03948 Ribosomal protein L9, C-terminal domain Tmath_2260 PF01281 Ribosomal protein L9, N-terminal domain Tmath_2261 PF02272 DHHA1 domain Tmath_2261 PF01368 DHH family Tmath_2264 PF01084 Ribosomal protein S18 Tmath_2265 PF00436 Single-strand binding protein family Tmath_2266 PF01250 Ribosomal protein S6 Tmath_2267 PF06107 Bacterial protein of unknown function (DUF951) Tmath_2268 PF00924 Mechanosensitive ion channel Tmath_2269 PF06866 Protein of unknown function (DUF1256) Tmath_2270 PF08245 Mur ligase middle domain Tmath_2270 PF08443 RimK-like ATP-grasp domain Tmath_2270 PF02875 Mur ligase family, glutamate ligase domain Tmath_2274 PF00266 Aminotransferase class-V Tmath_2275 PF17762 HTH domain found in ParB protein Tmath_2275 PF02195 ParB-like nuclease domain Tmath_2276 PF13614 AAA domain Tmath_2280 PF02527 rRNA small subunit methyltransferase G Tmath_2281 PF13932 GidA associated domain Tmath_2281 PF01134 Glucose inhibited division protein A Tmath_2282 PF12631 MnmE helical domain Tmath_2282 PF01926 50S ribosome-binding GTPase Tmath_2282 PF10396 GTP-binding protein TrmE N-terminus Tmath_2283 PF01424 R3H domain Tmath_2283 PF14804 Jag N-terminus Tmath_2284 PF02096 60Kd inner membrane protein Tmath_2285 PF01809 Putative membrane protein insertion efficiency factor Tmath_2286 PF00825 Ribonuclease P Tmath_2287 PF00468 Ribosomal protein L34