Tmath_0001 PF00308 Bacterial dnaA protein Tmath_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tmath_0001 PF11638 DnaA N-terminal domain Tmath_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tmath_0002 PF02767 DNA polymerase III beta subunit, central domain Tmath_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tmath_0003 PF13275 S4 domain Tmath_0004 PF02463 RecF/RecN/SMC N terminal domain Tmath_0005 PF04025 Tmath_0005 Tmath_0006 PF01055 Glycosyl hydrolases family 31 Tmath_0006 PF13802 Galactose mutarotase-like Tmath_0006 PF16338 Tmath_0006 Tmath_0006 PF17137 Tmath_0006 Tmath_0007 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tmath_0008 PF08245 Mur ligase middle domain Tmath_0008 PF08353 Tmath_0008 Tmath_0009 PF00204 DNA gyrase B Tmath_0009 PF00986 DNA gyrase B subunit, carboxyl terminus Tmath_0009 PF01751 Toprim domain Tmath_0009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0010 PF00521 DNA gyrase/topoisomerase IV, subunit A Tmath_0010 PF03989 DNA gyrase C-terminal domain, beta-propeller Tmath_0012 PF05133 Phage portal protein, SPP1 Gp6-like Tmath_0013 PF06152 Tmath_0013 Tmath_0014 PF06782 Tmath_0014 Tmath_0019 PF00665 Integrase core domain Tmath_0021 PF09827 CRISPR associated protein Cas2 Tmath_0022 PF01867 CRISPR associated protein Cas1 Tmath_0023 PF01930 Domain of unknown function DUF83 Tmath_0024 PF00270 DEAD/DEAH box helicase Tmath_0024 PF00271 Helicase conserved C-terminal domain Tmath_0025 PF09704 CRISPR-associated protein (Cas_Cas5) Tmath_0026 PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 Tmath_0027 PF09706 Tmath_0027 Tmath_0028 PF01881 CRISPR associated protein Cas6 Tmath_0029 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tmath_0030 PF10369 Small subunit of acetolactate synthase Tmath_0030 PF13710 ACT domain Tmath_0031 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tmath_0031 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Tmath_0032 PF00682 HMGL-like Tmath_0033 PF00330 Aconitase family (aconitate hydratase) Tmath_0034 PF00694 Aconitase C-terminal domain Tmath_0035 PF00180 Isocitrate/isopropylmalate dehydrogenase Tmath_0036 PF00920 Dehydratase family Tmath_0037 PF00205 Thiamine pyrophosphate enzyme, central domain Tmath_0037 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_0037 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tmath_0038 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tmath_0038 PF01872 RibD C-terminal domain Tmath_0039 PF00677 Lumazine binding domain Tmath_0040 PF00925 GTP cyclohydrolase II Tmath_0040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tmath_0041 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tmath_0042 PF01594 Tmath_0042 Tmath_0044 PF00717 Peptidase S24-like Tmath_0045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_0045 PF02403 Seryl-tRNA synthetase N-terminal domain Tmath_0046 PF03816 Cell envelope-related transcriptional attenuator domain Tmath_0046 PF13399 LytR cell envelope-related transcriptional attenuator Tmath_0047 PF03699 Tmath_0047 Tmath_0048 PF00589 Phage integrase family Tmath_0048 PF14657 Tmath_0048 Tmath_0048 PF14659 Phage integrase, N-terminal SAM-like domain Tmath_0049 PF13091 PLD-like domain Tmath_0051 PF01381 Helix-turn-helix Tmath_0052 PF01381 Helix-turn-helix Tmath_0053 PF12728 Helix-turn-helix domain Tmath_0057 PF05440 Tmath_0057 Tmath_0061 PF13614 AAA domain Tmath_0062 PF00437 Type II/IV secretion system protein Tmath_0067 PF08666 SAF domain Tmath_0067 PF16976 Tmath_0067 Tmath_0069 PF01478 Type IV leader peptidase family Tmath_0070 PF01966 HD domain Tmath_0071 PF06406 StbA protein Tmath_0078 PF02534 Type IV secretory system Conjugative DNA transfer Tmath_0081 PF12666 Tmath_0081 Tmath_0083 PF01935 Domain of unknown function DUF87 Tmath_0084 PF01551 Peptidase family M23 Tmath_0087 PF04266 ASCH domain Tmath_0089 PF15723 Tmath_0089 Tmath_0090 PF15731 Tmath_0090 Tmath_0091 PF07833 Copper amine oxidase N-terminal domain Tmath_0092 PF00801 PKD domain Tmath_0094 PF04754 Tmath_0094 Tmath_0095 PF07927 YcfA-like protein Tmath_0096 PF15919 Tmath_0096 Tmath_0097 PF12788 Tmath_0097 Tmath_0098 PF14437 Tmath_0098 Tmath_0099 PF01966 HD domain Tmath_0099 PF13185 GAF domain Tmath_0099 PF13426 PAS domain Tmath_0100 PF12169 DNA polymerase III subunits gamma and tau domain III Tmath_0100 PF13177 DNA polymerase III, delta subunit Tmath_0101 PF02575 YbaB/EbfC DNA-binding family Tmath_0102 PF00633 Helix-hairpin-helix motif Tmath_0102 PF02132 RecR protein Tmath_0102 PF13662 Toprim domain Tmath_0103 PF02537 Tmath_0103 Tmath_0104 PF02537 Tmath_0104 Tmath_0105 PF01966 HD domain Tmath_0106 PF10704 Tmath_0106 Tmath_0107 PF07441 Tmath_0107 Tmath_0108 PF07870 Tmath_0108 Tmath_0109 PF13561 Enoyl-(Acyl carrier protein) reductase Tmath_0110 PF00849 RNA pseudouridylate synthase Tmath_0110 PF01479 S4 domain Tmath_0111 PF00150 Cellulase (glycosyl hydrolase family 5) Tmath_0112 PF04041 Domain of unknown function (DUF377) Tmath_0113 PF04041 Domain of unknown function (DUF377) Tmath_0114 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_0114 PF00483 Nucleotidyl transferase Tmath_0115 PF00534 Glycosyl transferases group 1 Tmath_0115 PF13439 Glycosyltransferase Family 4 Tmath_0117 PF07478 D-ala D-ala ligase C-terminus Tmath_0118 PF13561 Enoyl-(Acyl carrier protein) reductase Tmath_0119 PF00440 Bacterial regulatory proteins, tetR family Tmath_0119 PF08359 YsiA-like protein, C-terminal region Tmath_0120 PF12698 ABC-2 family transporter protein Tmath_0121 PF00128 Alpha amylase, catalytic domain Tmath_0121 PF00395 S-layer homology domain Tmath_0121 PF00686 Starch binding domain Tmath_0121 PF02903 Alpha amylase, N-terminal ig-like domain Tmath_0123 PF05681 Tmath_0123 Tmath_0124 PF05683 Fumarase C-terminus Tmath_0125 PF03167 Uracil DNA glycosylase superfamily Tmath_0127 PF06032 Protein of unknown function (DUF917) Tmath_0128 PF00158 Sigma-54 interaction domain Tmath_0129 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Tmath_0130 PF06032 Protein of unknown function (DUF917) Tmath_0131 PF01968 Hydantoinase/oxoprolinase Tmath_0131 PF05378 Tmath_0131 Tmath_0132 PF01177 Asp/Glu/Hydantoin racemase Tmath_0133 PF01206 Sulfurtransferase TusA Tmath_0134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tmath_0134 PF03466 LysR substrate binding domain Tmath_0135 PF04143 Tmath_0135 Tmath_0136 PF01206 Sulfurtransferase TusA Tmath_0137 PF04143 Tmath_0137 Tmath_0138 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0139 PF00480 ROK family Tmath_0140 PF03352 Methyladenine glycosylase Tmath_0141 PF10764 Tmath_0141 Tmath_0142 PF01276 Orn/Lys/Arg decarboxylase, major domain Tmath_0142 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tmath_0143 PF02223 Thymidylate kinase Tmath_0144 PF06153 Protein of unknown function (DUF970) Tmath_0145 PF03885 Protein of unknown function (DUF327) Tmath_0146 PF09115 DNA polymerase III, delta subunit, C terminal Tmath_0146 PF13177 DNA polymerase III, delta subunit Tmath_0147 PF04468 Tmath_0147 Tmath_0148 PF02274 Amidinotransferase Tmath_0149 PF05175 Methyltransferase small domain Tmath_0150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0151 PF01545 Cation efflux family Tmath_0151 PF16916 Tmath_0151 Tmath_0152 PF04014 Antidote-toxin recognition MazE Tmath_0153 PF07670 Nucleoside recognition Tmath_0154 PF07670 Nucleoside recognition Tmath_0155 PF01743 Poly A polymerase head domain Tmath_0155 PF01966 HD domain Tmath_0155 PF12627 Probable RNA and SrmB- binding site of polymerase A Tmath_0156 PF01588 Putative tRNA binding domain Tmath_0156 PF08264 Anticodon-binding domain of tRNA Tmath_0156 PF09334 tRNA synthetases class I (M) Tmath_0157 PF01026 TatD related DNase Tmath_0158 PF03990 Tmath_0158 Tmath_0158 PF06725 3D domain Tmath_0158 PF07501 G5 domain Tmath_0159 PF00398 Ribosomal RNA adenine dimethylase Tmath_0161 PF00381 PTS HPr component phosphorylation site Tmath_0162 PF00395 S-layer homology domain Tmath_0162 PF14343 Tmath_0162 Tmath_0163 PF12791 Tmath_0163 Tmath_0164 PF04542 Sigma-70 region 2 Tmath_0165 PF01883 Domain of unknown function DUF59 Tmath_0165 PF10609 ParA/MinD ATPase like Tmath_0168 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_0168 PF01434 Peptidase family M41 Tmath_0169 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tmath_0169 PF10531 SLBB domain Tmath_0169 PF13237 4Fe-4S dicluster domain Tmath_0169 PF13375 RnfC Barrel sandwich hybrid domain Tmath_0170 PF03116 Tmath_0170 Tmath_0171 PF04205 FMN-binding domain Tmath_0172 PF02508 Tmath_0172 Tmath_0173 PF02508 Tmath_0173 Tmath_0174 PF04060 Putative Fe-S cluster Tmath_0174 PF12838 4Fe-4S dicluster domain Tmath_0175 PF00072 Response regulator receiver domain Tmath_0177 PF01116 Fructose-bisphosphate aldolase class-II Tmath_0178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0178 PF07497 Rho termination factor, RNA-binding domain Tmath_0178 PF07498 Rho termination factor, N-terminal domain Tmath_0179 PF01197 Ribosomal protein L31 Tmath_0180 PF00265 Thymidine kinase Tmath_0181 PF07136 Tmath_0181 Tmath_0182 PF05175 Methyltransferase small domain Tmath_0183 PF00472 RF-1 domain Tmath_0183 PF03462 PCRF domain Tmath_0184 PF02535 Tmath_0184 Tmath_0185 PF01300 Telomere recombination Tmath_0185 PF03481 Putative GTP-binding controlling metal-binding Tmath_0186 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tmath_0186 PF02502 Ribose/Galactose Isomerase Tmath_0187 PF14681 Uracil phosphoribosyltransferase Tmath_0188 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tmath_0189 PF00953 Glycosyl transferase family 4 Tmath_0190 PF02350 UDP-N-acetylglucosamine 2-epimerase Tmath_0192 PF08680 Protein of unknown function (DUF1779) Tmath_0193 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_0194 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Tmath_0194 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Tmath_0195 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tmath_0196 PF08486 Tmath_0196 Tmath_0197 PF01551 Peptidase family M23 Tmath_0198 PF12116 Stage III sporulation protein D Tmath_0199 PF06723 MreB/Mbl protein Tmath_0200 PF00460 Flagella basal body rod protein Tmath_0200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_0201 PF00460 Flagella basal body rod protein Tmath_0201 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_0202 PF10135 Tmath_0202 Tmath_0203 PF07977 FabA-like domain Tmath_0204 PF03023 Tmath_0204 Tmath_0205 PF00037 4Fe-4S binding domain Tmath_0205 PF04015 Tmath_0205 Tmath_0207 PF02578 Multi-copper polyphenol oxidoreductase laccase Tmath_0208 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tmath_0209 PF01850 PIN domain Tmath_0210 PF00158 Sigma-54 interaction domain Tmath_0210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0210 PF00874 PRD domain Tmath_0210 PF03610 PTS system fructose IIA component Tmath_0211 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0212 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0213 PF03611 Tmath_0213 Tmath_0214 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0214 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0215 PF08666 SAF domain Tmath_0216 PF04295 Tmath_0216 Tmath_0217 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Tmath_0217 PF13378 Enolase C-terminal domain-like Tmath_0218 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0218 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0219 PF01081 KDPG and KHG aldolase Tmath_0220 PF07690 Major Facilitator Superfamily Tmath_0221 PF00158 Sigma-54 interaction domain Tmath_0221 PF00874 PRD domain Tmath_0221 PF03610 PTS system fructose IIA component Tmath_0222 PF03610 PTS system fructose IIA component Tmath_0223 PF03609 Tmath_0223 Tmath_0224 PF03613 Tmath_0224 Tmath_0225 PF03830 PTS system sorbose subfamily IIB component Tmath_0226 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0226 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0227 PF01081 KDPG and KHG aldolase Tmath_0228 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0228 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0229 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tmath_0229 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_0230 PF02386 Cation transport protein Tmath_0231 PF02080 TrkA-C domain Tmath_0231 PF02254 TrkA-N domain Tmath_0233 PF01261 Xylose isomerase-like TIM barrel Tmath_0234 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_0234 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_0235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_0235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_0236 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_0236 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_0237 PF02614 Glucuronate isomerase Tmath_0238 PF01081 KDPG and KHG aldolase Tmath_0239 PF01232 Mannitol dehydrogenase Rossmann domain Tmath_0239 PF08125 Mannitol dehydrogenase C-terminal domain Tmath_0240 PF00294 pfkB family carbohydrate kinase Tmath_0241 PF03786 D-mannonate dehydratase (UxuA) Tmath_0242 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0243 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0244 PF13416 Bacterial extracellular solute-binding protein Tmath_0246 PF00703 Glycosyl hydrolases family 2 Tmath_0246 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tmath_0246 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tmath_0246 PF16355 Tmath_0246 Tmath_0247 PF00331 Glycosyl hydrolase family 10 Tmath_0248 PF03648 Glycosyl hydrolase family 67 N-terminus Tmath_0248 PF07477 Glycosyl hydrolase family 67 C-terminus Tmath_0248 PF07488 Glycosyl hydrolase family 67 middle domain Tmath_0249 PF03512 Glycosyl hydrolase family 52 Tmath_0250 PF05448 Acetyl xylan esterase (AXE1) Tmath_0251 PF00331 Glycosyl hydrolase family 10 Tmath_0251 PF00395 S-layer homology domain Tmath_0251 PF02018 Carbohydrate binding domain Tmath_0251 PF06452 Domain of unknown function (DUF1083) Tmath_0252 PF04854 Tmath_0252 Tmath_0254 PF13416 Bacterial extracellular solute-binding protein Tmath_0255 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0256 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0257 PF00933 Glycosyl hydrolase family 3 N terminal domain Tmath_0257 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tmath_0257 PF14310 Fibronectin type III-like domain Tmath_0258 PF00480 ROK family Tmath_0258 PF13412 Winged helix-turn-helix DNA-binding Tmath_0259 PF05685 Putative restriction endonuclease Tmath_0260 PF00356 Bacterial regulatory proteins, lacI family Tmath_0260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Tmath_0261 PF00294 pfkB family carbohydrate kinase Tmath_0262 PF05025 RbsD / FucU transport protein family Tmath_0263 PF00005 ABC transporter Tmath_0264 PF02653 Tmath_0264 Tmath_0265 PF13407 Periplasmic binding protein domain Tmath_0266 PF01380 SIS domain Tmath_0266 PF01418 Helix-turn-helix domain, rpiR family Tmath_0267 PF13580 SIS domain Tmath_0268 PF01547 Bacterial extracellular solute-binding protein Tmath_0269 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0270 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0271 PF00005 ABC transporter Tmath_0273 PF00144 Beta-lactamase Tmath_0274 PF07075 Protein of unknown function (DUF1343) Tmath_0275 PF00933 Glycosyl hydrolase family 3 N terminal domain Tmath_0275 PF01915 Glycosyl hydrolase family 3 C-terminal domain Tmath_0276 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_0277 PF03702 Uncharacterised protein family (UPF0075) Tmath_0278 PF00583 Acetyltransferase (GNAT) family Tmath_0279 PF02585 GlcNAc-PI de-N-acetylase Tmath_0280 PF00583 Acetyltransferase (GNAT) family Tmath_0280 PF13508 Acetyltransferase (GNAT) domain Tmath_0281 PF02368 Bacterial Ig-like domain (group 2) Tmath_0281 PF02638 Tmath_0281 Tmath_0285 PF06782 Tmath_0285 Tmath_0287 PF01979 Amidohydrolase family Tmath_0288 PF00155 Aminotransferase class I and II Tmath_0289 PF01037 AsnC family Tmath_0289 PF13412 Winged helix-turn-helix DNA-binding Tmath_0290 PF04023 FeoA domain Tmath_0291 PF02421 Ferrous iron transport protein B Tmath_0291 PF07664 Tmath_0291 Tmath_0291 PF07670 Nucleoside recognition Tmath_0292 PF06782 Tmath_0292 Tmath_0293 PF01909 Nucleotidyltransferase domain Tmath_0294 PF00005 ABC transporter Tmath_0295 PF02361 Cobalt transport protein Tmath_0296 PF13190 Tmath_0296 Tmath_0297 PF01891 Cobalt uptake substrate-specific transmembrane region Tmath_0298 PF01402 Ribbon-helix-helix protein, copG family Tmath_0298 PF08753 NikR C terminal nickel binding domain Tmath_0299 PF00588 SpoU rRNA Methylase family Tmath_0300 PF00817 impB/mucB/samB family Tmath_0300 PF11798 IMS family HHH motif Tmath_0300 PF11799 impB/mucB/samB family C-terminal domain Tmath_0301 PF01554 MatE Tmath_0302 PF13437 HlyD family secretion protein Tmath_0302 PF13533 Biotin-lipoyl like Tmath_0303 PF00005 ABC transporter Tmath_0304 PF02687 Tmath_0304 Tmath_0304 PF12704 MacB-like periplasmic core domain Tmath_0305 PF01814 Hemerythrin HHE cation binding domain Tmath_0306 PF01814 Hemerythrin HHE cation binding domain Tmath_0307 PF01557 Fumarylacetoacetate (FAA) hydrolase family Tmath_0308 PF04257 Exodeoxyribonuclease V, gamma subunit Tmath_0308 PF12705 PD-(D/E)XK nuclease superfamily Tmath_0309 PF00580 UvrD/REP helicase N-terminal domain Tmath_0309 PF12705 PD-(D/E)XK nuclease superfamily Tmath_0309 PF13361 UvrD-like helicase C-terminal domain Tmath_0310 PF00149 Calcineurin-like phosphoesterase Tmath_0310 PF12320 Type 5 capsule protein repressor C-terminal domain Tmath_0311 PF13476 AAA domain Tmath_0311 PF13558 Putative exonuclease SbcCD, C subunit Tmath_0312 PF00578 AhpC/TSA family Tmath_0312 PF10417 C-terminal domain of 1-Cys peroxiredoxin Tmath_0313 PF01475 Ferric uptake regulator family Tmath_0315 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tmath_0315 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tmath_0317 PF00534 Glycosyl transferases group 1 Tmath_0317 PF13439 Glycosyltransferase Family 4 Tmath_0318 PF09335 Tmath_0318 Tmath_0319 PF05949 Bacterial protein of unknown function (DUF881) Tmath_0320 PF00056 lactate/malate dehydrogenase, NAD binding domain Tmath_0320 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Tmath_0322 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0323 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0324 PF03479 Domain of unknown function (DUF296) Tmath_0325 PF13407 Periplasmic binding protein domain Tmath_0326 PF00672 HAMP domain Tmath_0326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0326 PF06580 Tmath_0326 Tmath_0327 PF00072 Response regulator receiver domain Tmath_0327 PF12833 Helix-turn-helix domain Tmath_0328 PF13407 Periplasmic binding protein domain Tmath_0329 PF13407 Periplasmic binding protein domain Tmath_0330 PF00005 ABC transporter Tmath_0331 PF02653 Tmath_0331 Tmath_0332 PF02347 Glycine cleavage system P-protein Tmath_0333 PF02347 Glycine cleavage system P-protein Tmath_0334 PF01597 Glycine cleavage H-protein Tmath_0335 PF01571 Aminomethyltransferase folate-binding domain Tmath_0335 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tmath_0336 PF03099 Biotin/lipoate A/B protein ligase family Tmath_0336 PF10437 Bacterial lipoate protein ligase C-terminus Tmath_0337 PF00364 Biotin-requiring enzyme Tmath_0337 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tmath_0337 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0338 PF02566 OsmC-like protein Tmath_0339 PF04754 Tmath_0339 Tmath_0340 PF00155 Aminotransferase class I and II Tmath_0341 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0341 PF00874 PRD domain Tmath_0341 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0341 PF08279 HTH domain Tmath_0342 PF03611 Tmath_0342 Tmath_0343 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0344 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tmath_0345 PF01261 Xylose isomerase-like TIM barrel Tmath_0346 PF00596 Class II Aldolase and Adducin N-terminal domain Tmath_0347 PF13483 Beta-lactamase superfamily domain Tmath_0350 PF00465 Iron-containing alcohol dehydrogenase Tmath_0351 PF00905 Penicillin binding protein transpeptidase domain Tmath_0351 PF00912 Transglycosylase Tmath_0352 PF04389 Peptidase family M28 Tmath_0353 PF00440 Bacterial regulatory proteins, tetR family Tmath_0354 PF09989 Tmath_0354 Tmath_0355 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Tmath_0356 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_0357 PF12822 Protein of unknown function (DUF3816) Tmath_0358 PF00005 ABC transporter Tmath_0359 PF03649 Tmath_0359 Tmath_0360 PF00133 tRNA synthetases class I (I, L, M and V) Tmath_0360 PF08264 Anticodon-binding domain of tRNA Tmath_0360 PF09334 tRNA synthetases class I (M) Tmath_0360 PF13603 Leucyl-tRNA synthetase, Domain 2 Tmath_0361 PF03591 Tmath_0361 Tmath_0362 PF05437 Tmath_0362 Tmath_0363 PF00294 pfkB family carbohydrate kinase Tmath_0363 PF13412 Winged helix-turn-helix DNA-binding Tmath_0364 PF04227 Indigoidine synthase A like protein Tmath_0366 PF01384 Tmath_0366 Tmath_0367 PF01865 Protein of unknown function DUF47 Tmath_0368 PF00158 Sigma-54 interaction domain Tmath_0368 PF00874 PRD domain Tmath_0368 PF03610 PTS system fructose IIA component Tmath_0369 PF02378 Phosphotransferase system, EIIC Tmath_0370 PF04794 YdjC-like protein Tmath_0371 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0372 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tmath_0373 PF02056 Family 4 glycosyl hydrolase Tmath_0373 PF11975 Family 4 glycosyl hydrolase C-terminal domain Tmath_0374 PF00232 Glycosyl hydrolase family 1 Tmath_0375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0375 PF02378 Phosphotransferase system, EIIC Tmath_0376 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0376 PF00874 PRD domain Tmath_0376 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0376 PF05043 Mga helix-turn-helix domain Tmath_0377 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0378 PF01232 Mannitol dehydrogenase Rossmann domain Tmath_0378 PF08125 Mannitol dehydrogenase C-terminal domain Tmath_0379 PF00149 Calcineurin-like phosphoesterase Tmath_0379 PF02872 5'-nucleotidase, C-terminal domain Tmath_0379 PF08239 Bacterial SH3 domain Tmath_0379 PF09587 Bacterial capsule synthesis protein PGA_cap Tmath_0380 PF01207 Dihydrouridine synthase (Dus) Tmath_0381 PF01925 Tmath_0381 Tmath_0383 PF00356 Bacterial regulatory proteins, lacI family Tmath_0383 PF13377 Periplasmic binding protein-like domain Tmath_0384 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tmath_0385 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0386 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0386 PF12911 Tmath_0386 Tmath_0387 PF00005 ABC transporter Tmath_0387 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_0388 PF00005 ABC transporter Tmath_0388 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_0389 PF00703 Glycosyl hydrolases family 2 Tmath_0389 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tmath_0389 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tmath_0390 PF00232 Glycosyl hydrolase family 1 Tmath_0391 PF00950 Tmath_0391 Tmath_0392 PF00005 ABC transporter Tmath_0393 PF01297 Periplasmic solute binding protein family Tmath_0394 PF01475 Ferric uptake regulator family Tmath_0395 PF04011 LemA family Tmath_0396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Tmath_0396 PF03466 LysR substrate binding domain Tmath_0397 PF17179 Tmath_0397 Tmath_0398 PF00175 Oxidoreductase NAD-binding domain Tmath_0398 PF00970 Oxidoreductase FAD-binding domain Tmath_0398 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_0399 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tmath_0399 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tmath_0399 PF12838 4Fe-4S dicluster domain Tmath_0400 PF01026 TatD related DNase Tmath_0401 PF10007 Tmath_0401 Tmath_0403 PF01592 NifU-like N terminal domain Tmath_0405 PF04536 TLP18 Tmath_0406 PF05685 Putative restriction endonuclease Tmath_0409 PF01497 Periplasmic binding protein Tmath_0410 PF01032 FecCD transport family Tmath_0411 PF00005 ABC transporter Tmath_0412 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_0412 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tmath_0413 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tmath_0413 PF13500 AAA domain Tmath_0414 PF03186 Tmath_0414 Tmath_0415 PF12822 Protein of unknown function (DUF3816) Tmath_0416 PF00586 AIR synthase related protein, N-terminal domain Tmath_0417 PF00155 Aminotransferase class I and II Tmath_0418 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Tmath_0419 PF02654 Tmath_0419 Tmath_0420 PF01903 CbiX Tmath_0421 PF02570 Precorrin-8X methylmutase Tmath_0422 PF01888 CbiD Tmath_0423 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0424 PF02475 Met-10+ like-protein Tmath_0425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0426 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0427 PF01890 Cobalamin synthesis G C-terminus Tmath_0427 PF11760 Cobalamin synthesis G N-terminal Tmath_0427 PF11761 Tmath_0427 Tmath_0428 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0429 PF02571 Tmath_0429 Tmath_0430 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Tmath_0430 PF01488 Shikimate / quinate 5-dehydrogenase Tmath_0430 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Tmath_0431 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Tmath_0431 PF03900 Porphobilinogen deaminase, C-terminal domain Tmath_0432 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_0432 PF02602 Uroporphyrinogen-III synthase HemD Tmath_0433 PF00490 Delta-aminolevulinic acid dehydratase Tmath_0434 PF13241 Putative NAD(P)-binding Tmath_0434 PF14824 Sirohaem biosynthesis protein central Tmath_0435 PF01850 PIN domain Tmath_0436 PF04014 Antidote-toxin recognition MazE Tmath_0437 PF00202 Aminotransferase class-III Tmath_0438 PF01891 Cobalt uptake substrate-specific transmembrane region Tmath_0439 PF02553 Tmath_0439 Tmath_0440 PF02361 Cobalt transport protein Tmath_0441 PF00005 ABC transporter Tmath_0443 PF00180 Isocitrate/isopropylmalate dehydrogenase Tmath_0446 PF07853 Tmath_0446 Tmath_0447 PF00196 Bacterial regulatory proteins, luxR family Tmath_0452 PF04055 Radical SAM superfamily Tmath_0452 PF13353 4Fe-4S single cluster domain Tmath_0453 PF04055 Radical SAM superfamily Tmath_0453 PF13353 4Fe-4S single cluster domain Tmath_0454 PF00005 ABC transporter Tmath_0455 PF06182 Tmath_0455 Tmath_0456 PF06182 Tmath_0456 Tmath_0457 PF00196 Bacterial regulatory proteins, luxR family Tmath_0459 PF04055 Radical SAM superfamily Tmath_0459 PF13186 Iron-sulfur cluster-binding domain Tmath_0459 PF13353 4Fe-4S single cluster domain Tmath_0460 PF07690 Major Facilitator Superfamily Tmath_0462 PF00196 Bacterial regulatory proteins, luxR family Tmath_0464 PF16219 Tmath_0464 Tmath_0468 PF00005 ABC transporter Tmath_0469 PF16962 Tmath_0469 Tmath_0470 PF00196 Bacterial regulatory proteins, luxR family Tmath_0475 PF00881 Nitroreductase family Tmath_0476 PF02517 CAAX protease self-immunity Tmath_0477 PF00005 ABC transporter Tmath_0478 PF01061 Tmath_0478 Tmath_0479 PF02624 YcaO-like family Tmath_0480 PF12676 Tmath_0480 Tmath_0484 PF00005 ABC transporter Tmath_0486 PF01061 Tmath_0486 Tmath_0487 PF00881 Nitroreductase family Tmath_0489 PF00196 Bacterial regulatory proteins, luxR family Tmath_0492 PF00005 ABC transporter Tmath_0493 PF03547 Tmath_0493 Tmath_0494 PF07853 Tmath_0494 Tmath_0494 PF13630 Tmath_0494 Tmath_0495 PF05343 M42 glutamyl aminopeptidase Tmath_0496 PF05343 M42 glutamyl aminopeptidase Tmath_0497 PF05343 M42 glutamyl aminopeptidase Tmath_0498 PF01988 Tmath_0498 Tmath_0498 PF02915 Rubrerythrin Tmath_0499 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tmath_0499 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tmath_0499 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_0499 PF10371 Domain of unknown function Tmath_0499 PF13484 Tmath_0499 Tmath_0499 PF17147 Tmath_0499 Tmath_0500 PF01966 HD domain Tmath_0501 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0501 PF00672 HAMP domain Tmath_0501 PF02743 Cache domain Tmath_0502 PF02971 Formiminotransferase domain Tmath_0502 PF07837 Formiminotransferase domain, N-terminal subdomain Tmath_0505 PF00128 Alpha amylase, catalytic domain Tmath_0505 PF16657 Tmath_0505 Tmath_0506 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0507 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0508 PF01547 Bacterial extracellular solute-binding protein Tmath_0509 PF02743 Cache domain Tmath_0509 PF06580 Tmath_0509 Tmath_0510 PF00072 Response regulator receiver domain Tmath_0510 PF12833 Helix-turn-helix domain Tmath_0511 PF04961 Formiminotransferase-cyclodeaminase Tmath_0512 PF02608 Basic membrane protein Tmath_0515 PF00005 ABC transporter Tmath_0516 PF02653 Tmath_0516 Tmath_0517 PF02653 Tmath_0517 Tmath_0518 PF00392 Bacterial regulatory proteins, gntR family Tmath_0518 PF07702 UTRA domain Tmath_0519 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tmath_0520 PF01676 Metalloenzyme superfamily Tmath_0521 PF00591 Glycosyl transferase family, a/b domain Tmath_0521 PF02885 Glycosyl transferase family, helical bundle domain Tmath_0521 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Tmath_0522 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0524 PF00367 phosphotransferase system, EIIB Tmath_0524 PF02378 Phosphotransferase system, EIIC Tmath_0525 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Tmath_0526 PF00874 PRD domain Tmath_0526 PF03123 CAT RNA binding domain Tmath_0527 PF00682 HMGL-like Tmath_0528 PF00330 Aconitase family (aconitate hydratase) Tmath_0528 PF00694 Aconitase C-terminal domain Tmath_0530 PF00480 ROK family Tmath_0530 PF13412 Winged helix-turn-helix DNA-binding Tmath_0533 PF01968 Hydantoinase/oxoprolinase Tmath_0533 PF05378 Tmath_0533 Tmath_0535 PF12831 FAD dependent oxidoreductase Tmath_0536 PF02261 Aspartate decarboxylase Tmath_0537 PF02569 Pantoate-beta-alanine ligase Tmath_0538 PF02548 Ketopantoate hydroxymethyltransferase Tmath_0539 PF10727 Rossmann-like domain Tmath_0539 PF10728 Domain of unknown function (DUF2520) Tmath_0540 PF08704 tRNA methyltransferase complex GCD14 subunit Tmath_0541 PF14276 Tmath_0541 Tmath_0542 PF04239 Protein of unknown function (DUF421) Tmath_0543 PF08282 haloacid dehalogenase-like hydrolase Tmath_0544 PF00356 Bacterial regulatory proteins, lacI family Tmath_0544 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Tmath_0545 PF00072 Response regulator receiver domain Tmath_0545 PF00486 Transcriptional regulatory protein, C terminal Tmath_0546 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0546 PF00672 HAMP domain Tmath_0546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0546 PF14827 Sensory domain of two-component sensor kinase Tmath_0547 PF10646 Tmath_0547 Tmath_0547 PF10648 Tmath_0547 Tmath_0548 PF06866 Tmath_0548 Tmath_0550 PF09992 Predicted periplasmic protein (DUF2233) Tmath_0551 PF02915 Rubrerythrin Tmath_0552 PF02597 ThiS family Tmath_0553 PF01171 PP-loop family Tmath_0554 PF00899 ThiF family Tmath_0555 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tmath_0555 PF02772 S-adenosylmethionine synthetase, central domain Tmath_0555 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tmath_0556 PF13538 UvrD-like helicase C-terminal domain Tmath_0556 PF13604 AAA domain Tmath_0556 PF14490 Helix-hairpin-helix containing domain Tmath_0556 PF14520 Helix-hairpin-helix domain Tmath_0557 PF00156 Phosphoribosyl transferase domain Tmath_0559 PF04316 Anti-sigma-28 factor, FlgM Tmath_0560 PF05130 FlgN protein Tmath_0561 PF00460 Flagella basal body rod protein Tmath_0561 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_0562 PF00669 Bacterial flagellin N-terminal helical region Tmath_0562 PF00700 Bacterial flagellin C-terminal helical region Tmath_0564 PF02623 FliW protein Tmath_0565 PF02599 Global regulator protein family Tmath_0566 PF00669 Bacterial flagellin N-terminal helical region Tmath_0566 PF00700 Bacterial flagellin C-terminal helical region Tmath_0568 PF01939 Protein of unknown function DUF91 Tmath_0569 PF00733 Asparagine synthase Tmath_0569 PF13537 Glutamine amidotransferase domain Tmath_0570 PF09388 Spo0E like sporulation regulatory protein Tmath_0571 PF03646 FlaG protein Tmath_0572 PF02465 Tmath_0572 Tmath_0572 PF07195 Tmath_0572 Tmath_0572 PF07196 Flagellin hook IN motif Tmath_0573 PF02561 Flagellar protein FliS Tmath_0574 PF05130 FlgN protein Tmath_0575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0575 PF00672 HAMP domain Tmath_0575 PF02743 Cache domain Tmath_0576 PF13451 Tmath_0576 Tmath_0577 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tmath_0578 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0579 PF00005 ABC transporter Tmath_0580 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tmath_0580 PF16321 Tmath_0580 Tmath_0582 PF01966 HD domain Tmath_0583 PF17248 Tmath_0583 Tmath_0584 PF02829 3H domain Tmath_0584 PF08279 HTH domain Tmath_0586 PF01043 SecA preprotein cross-linking domain Tmath_0586 PF02810 SEC-C motif Tmath_0586 PF07516 SecA Wing and Scaffold domain Tmath_0586 PF07517 SecA DEAD-like domain Tmath_0588 PF00575 S1 RNA binding domain Tmath_0588 PF09371 Tex-like protein N-terminal domain Tmath_0588 PF12836 Helix-hairpin-helix motif Tmath_0588 PF16921 Tmath_0588 Tmath_0589 PF07833 Copper amine oxidase N-terminal domain Tmath_0591 PF09335 Tmath_0591 Tmath_0592 PF01979 Amidohydrolase family Tmath_0593 PF07690 Major Facilitator Superfamily Tmath_0595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tmath_0595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tmath_0596 PF00696 Amino acid kinase family Tmath_0597 PF12822 Protein of unknown function (DUF3816) Tmath_0598 PF02367 Uncharacterised P-loop hydrolase UPF0079 Tmath_0599 PF00814 Glycoprotease family Tmath_0600 PF00583 Acetyltransferase (GNAT) family Tmath_0601 PF00814 Glycoprotease family Tmath_0602 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_0602 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_0603 PF00005 ABC transporter Tmath_0603 PF12848 ABC transporter Tmath_0603 PF16326 Tmath_0603 Tmath_0604 PF01618 Tmath_0604 Tmath_0605 PF00691 OmpA family Tmath_0605 PF13677 Tmath_0605 Tmath_0606 PF02629 CoA binding domain Tmath_0606 PF06971 Putative DNA-binding protein N-terminus Tmath_0608 PF00072 Response regulator receiver domain Tmath_0608 PF04397 LytTr DNA-binding domain Tmath_0609 PF14501 GHKL domain Tmath_0610 PF04647 Tmath_0610 Tmath_0612 PF03780 Tmath_0612 Tmath_0613 PF00175 Oxidoreductase NAD-binding domain Tmath_0613 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_0614 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_0614 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tmath_0615 PF01645 Conserved region in glutamate synthase Tmath_0616 PF00730 HhH-GPD superfamily base excision DNA repair protein Tmath_0616 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain Tmath_0617 PF04474 Tmath_0617 Tmath_0618 PF09021 HutP Tmath_0619 PF00082 Subtilase family Tmath_0624 PF00166 Chaperonin 10 Kd subunit Tmath_0625 PF00118 TCP-1/cpn60 chaperonin family Tmath_0626 PF00478 IMP dehydrogenase / GMP reductase domain Tmath_0626 PF00571 CBS domain Tmath_0627 PF00117 Glutamine amidotransferase class-I Tmath_0627 PF00958 GMP synthase C terminal domain Tmath_0627 PF02540 NAD synthase Tmath_0628 PF00860 Permease family Tmath_0629 PF00731 AIR carboxylase Tmath_0630 PF01259 SAICAR synthetase Tmath_0631 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Tmath_0632 PF13507 CobB/CobQ-like glutamine amidotransferase domain Tmath_0633 PF00586 AIR synthase related protein, N-terminal domain Tmath_0633 PF02769 AIR synthase related protein, C-terminal domain Tmath_0634 PF00156 Phosphoribosyl transferase domain Tmath_0634 PF13537 Glutamine amidotransferase domain Tmath_0635 PF00586 AIR synthase related protein, N-terminal domain Tmath_0635 PF02769 AIR synthase related protein, C-terminal domain Tmath_0636 PF00551 Formyl transferase Tmath_0637 PF01808 AICARFT/IMPCHase bienzyme Tmath_0637 PF02142 MGS-like domain Tmath_0638 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tmath_0638 PF02843 Phosphoribosylglycinamide synthetase, C domain Tmath_0638 PF02844 Phosphoribosylglycinamide synthetase, N domain Tmath_0639 PF01177 Asp/Glu/Hydantoin racemase Tmath_0640 PF01546 Peptidase family M20/M25/M40 Tmath_0640 PF07687 Peptidase dimerisation domain Tmath_0641 PF01943 Tmath_0641 Tmath_0641 PF14667 Polysaccharide biosynthesis C-terminal domain Tmath_0642 PF04055 Radical SAM superfamily Tmath_0642 PF06968 Biotin and Thiamin Synthesis associated domain Tmath_0643 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_0643 PF00874 PRD domain Tmath_0643 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0643 PF05043 Mga helix-turn-helix domain Tmath_0643 PF08279 HTH domain Tmath_0645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0646 PF02378 Phosphotransferase system, EIIC Tmath_0647 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tmath_0649 PF00580 UvrD/REP helicase N-terminal domain Tmath_0649 PF13361 UvrD-like helicase C-terminal domain Tmath_0650 PF00533 BRCA1 C Terminus (BRCT) domain Tmath_0650 PF01653 NAD-dependent DNA ligase adenylation domain Tmath_0650 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Tmath_0650 PF03120 NAD-dependent DNA ligase OB-fold domain Tmath_0650 PF12826 Helix-hairpin-helix motif Tmath_0650 PF14520 Helix-hairpin-helix domain Tmath_0651 PF02686 Glu-tRNAGln amidotransferase C subunit Tmath_0652 PF01425 Amidase Tmath_0653 PF02637 GatB domain Tmath_0653 PF02934 GatB/GatE catalytic domain Tmath_0655 PF01520 N-acetylmuramoyl-L-alanine amidase Tmath_0655 PF07833 Copper amine oxidase N-terminal domain Tmath_0655 PF11741 AMIN domain Tmath_0656 PF01138 3' exoribonuclease family, domain 1 Tmath_0656 PF03725 3' exoribonuclease family, domain 2 Tmath_0657 PF01725 Ham1 family Tmath_0658 PF12850 Calcineurin-like phosphoesterase superfamily domain Tmath_0661 PF00158 Sigma-54 interaction domain Tmath_0661 PF00874 PRD domain Tmath_0661 PF03610 PTS system fructose IIA component Tmath_0661 PF13412 Winged helix-turn-helix DNA-binding Tmath_0662 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tmath_0663 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_0664 PF02378 Phosphotransferase system, EIIC Tmath_0666 PF00834 Ribulose-phosphate 3 epimerase family Tmath_0667 PF02502 Ribose/Galactose Isomerase Tmath_0668 PF00232 Glycosyl hydrolase family 1 Tmath_0670 PF08543 Phosphomethylpyrimidine kinase Tmath_0671 PF02581 Thiamine monophosphate synthase/TENI Tmath_0672 PF02110 Hydroxyethylthiazole kinase family Tmath_0673 PF09512 Tmath_0673 Tmath_0674 PF02110 Hydroxyethylthiazole kinase family Tmath_0675 PF01895 PhoU domain Tmath_0676 PF00005 ABC transporter Tmath_0677 PF00005 ABC transporter Tmath_0677 PF12399 Branched-chain amino acid ATP-binding cassette transporter Tmath_0678 PF02653 Tmath_0678 Tmath_0679 PF02653 Tmath_0679 Tmath_0680 PF13458 Periplasmic binding protein Tmath_0685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tmath_0685 PF05697 Bacterial trigger factor protein (TF) Tmath_0685 PF05698 Bacterial trigger factor protein (TF) C-terminus Tmath_0686 PF00574 Clp protease Tmath_0687 PF06689 ClpX C4-type zinc finger Tmath_0687 PF07724 AAA domain (Cdc48 subfamily) Tmath_0687 PF10431 C-terminal, D2-small domain, of ClpB protein Tmath_0688 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_0688 PF02190 ATP-dependent protease La (LON) domain Tmath_0688 PF05362 Lon protease (S16) C-terminal proteolytic domain Tmath_0689 PF01926 50S ribosome-binding GTPase Tmath_0691 PF00119 ATP synthase A chain Tmath_0692 PF00137 ATP synthase subunit C Tmath_0693 PF00430 ATP synthase B/B' CF(0) Tmath_0694 PF00213 ATP synthase delta (OSCP) subunit Tmath_0695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0695 PF00306 ATP synthase alpha/beta chain, C terminal domain Tmath_0695 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_0696 PF00231 ATP synthase Tmath_0697 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_0697 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_0698 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Tmath_0698 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tmath_0699 PF00892 EamA-like transporter family Tmath_0700 PF00795 Carbon-nitrogen hydrolase Tmath_0700 PF02540 NAD synthase Tmath_0701 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0702 PF00005 ABC transporter Tmath_0703 PF09084 NMT1/THI5 like Tmath_0704 PF04932 Tmath_0704 Tmath_0704 PF13181 Tetratricopeptide repeat Tmath_0705 PF08011 Tmath_0705 Tmath_0705 PF09820 Tmath_0705 Tmath_0706 PF00571 CBS domain Tmath_0706 PF01769 Divalent cation transporter Tmath_0706 PF03448 MgtE intracellular N domain Tmath_0707 PF08011 Tmath_0707 Tmath_0707 PF09820 Tmath_0707 Tmath_0708 PF13173 AAA domain Tmath_0708 PF13635 Tmath_0708 Tmath_0711 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_0712 PF04754 Tmath_0712 Tmath_0713 PF02719 Polysaccharide biosynthesis protein Tmath_0714 PF16363 Tmath_0714 Tmath_0715 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Tmath_0716 PF02348 Cytidylyltransferase Tmath_0717 PF13302 Acetyltransferase (GNAT) domain Tmath_0718 PF03102 NeuB family Tmath_0718 PF08666 SAF domain Tmath_0719 PF04101 Glycosyltransferase family 28 C-terminal domain Tmath_0720 PF05159 Tmath_0720 Tmath_0722 PF00534 Glycosyl transferases group 1 Tmath_0722 PF13439 Glycosyltransferase Family 4 Tmath_0723 PF02397 Tmath_0723 Tmath_0723 PF13727 CoA-binding domain Tmath_0724 PF00483 Nucleotidyl transferase Tmath_0724 PF01050 Mannose-6-phosphate isomerase Tmath_0725 PF02706 Chain length determinant protein Tmath_0725 PF13807 Tmath_0725 Tmath_0726 PF13289 Tmath_0726 Tmath_0727 PF01935 Domain of unknown function DUF87 Tmath_0731 PF03477 ATP cone domain Tmath_0733 PF12850 Calcineurin-like phosphoesterase superfamily domain Tmath_0734 PF06108 Protein of unknown function (DUF952) Tmath_0735 PF01566 Tmath_0735 Tmath_0736 PF01909 Nucleotidyltransferase domain Tmath_0739 PF01361 Tautomerase enzyme Tmath_0740 PF09660 Tmath_0740 Tmath_0741 PF09661 Tmath_0741 Tmath_0742 PF13558 Putative exonuclease SbcCD, C subunit Tmath_0743 PF09664 Tmath_0743 Tmath_0743 PF11796 Tmath_0743 Tmath_0745 PF01909 Nucleotidyltransferase domain Tmath_0745 PF03787 RAMP superfamily Tmath_0746 PF08780 Nucleotidyltransferase substrate binding protein like Tmath_0748 PF03787 RAMP superfamily Tmath_0749 PF09701 CRISPR-associated protein (Cas_Cmr5) Tmath_0750 PF03787 RAMP superfamily Tmath_0751 PF12469 CRISPR-associated protein Tmath_0752 PF09700 CRISPR-associated protein (Cas_Cmr3) Tmath_0754 PF00248 Aldo/keto reductase family Tmath_0756 PF00248 Aldo/keto reductase family Tmath_0757 PF12682 Flavodoxin Tmath_0758 PF07883 Cupin domain Tmath_0759 PF13411 MerR HTH family regulatory protein Tmath_0760 PF06695 Tmath_0760 Tmath_0761 PF03030 Inorganic H+ pyrophosphatase Tmath_0762 PF04246 Tmath_0762 Tmath_0763 PF01139 tRNA-splicing ligase RtcB Tmath_0764 PF00467 KOW motif Tmath_0764 PF02357 Transcription termination factor nusG Tmath_0765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tmath_0765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tmath_0765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tmath_0765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tmath_0766 PF00483 Nucleotidyl transferase Tmath_0767 PF02706 Chain length determinant protein Tmath_0767 PF13807 Tmath_0767 Tmath_0769 PF09986 Tmath_0769 Tmath_0770 PF00122 E1-E2 ATPase Tmath_0770 PF00689 Cation transporting ATPase, C-terminus Tmath_0770 PF00690 Cation transporter/ATPase, N-terminus Tmath_0770 PF00702 haloacid dehalogenase-like hydrolase Tmath_0771 PF00334 Nucleoside diphosphate kinase Tmath_0772 PF07690 Major Facilitator Superfamily Tmath_0773 PF10997 Tmath_0773 Tmath_0774 PF04308 Tmath_0774 Tmath_0775 PF04893 Tmath_0775 Tmath_0777 PF01066 CDP-alcohol phosphatidyltransferase Tmath_0778 PF02540 NAD synthase Tmath_0779 PF00731 AIR carboxylase Tmath_0780 PF01969 Protein of unknown function DUF111 Tmath_0781 PF01969 Protein of unknown function DUF111 Tmath_0782 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0782 PF00672 HAMP domain Tmath_0782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0783 PF00072 Response regulator receiver domain Tmath_0783 PF00486 Transcriptional regulatory protein, C terminal Tmath_0784 PF10925 Tmath_0784 Tmath_0785 PF02632 BioY family Tmath_0786 PF02577 Bifunctional nuclease Tmath_0787 PF00133 tRNA synthetases class I (I, L, M and V) Tmath_0787 PF08264 Anticodon-binding domain of tRNA Tmath_0787 PF10458 Valyl tRNA synthetase tRNA binding arm Tmath_0788 PF00583 Acetyltransferase (GNAT) family Tmath_0789 PF02875 Mur ligase family, glutamate ligase domain Tmath_0789 PF08245 Mur ligase middle domain Tmath_0792 PF14277 Domain of unknown function (DUF4364) Tmath_0793 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_0794 PF13484 Tmath_0794 Tmath_0795 PF00356 Bacterial regulatory proteins, lacI family Tmath_0795 PF13377 Periplasmic binding protein-like domain Tmath_0796 PF03632 Glycosyl hydrolase family 65 central catalytic domain Tmath_0796 PF03633 Glycosyl hydrolase family 65, C-terminal domain Tmath_0796 PF03636 Glycosyl hydrolase family 65, N-terminal domain Tmath_0797 PF01547 Bacterial extracellular solute-binding protein Tmath_0798 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0799 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0800 PF13419 Haloacid dehalogenase-like hydrolase Tmath_0801 PF00356 Bacterial regulatory proteins, lacI family Tmath_0801 PF13377 Periplasmic binding protein-like domain Tmath_0802 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0803 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_0804 PF13416 Bacterial extracellular solute-binding protein Tmath_0805 PF03632 Glycosyl hydrolase family 65 central catalytic domain Tmath_0805 PF03633 Glycosyl hydrolase family 65, C-terminal domain Tmath_0805 PF03636 Glycosyl hydrolase family 65, N-terminal domain Tmath_0806 PF00082 Subtilase family Tmath_0806 PF04151 Bacterial pre-peptidase C-terminal domain Tmath_0806 PF05922 Peptidase inhibitor I9 Tmath_0808 PF00158 Sigma-54 interaction domain Tmath_0809 PF01476 LysM domain Tmath_0809 PF07486 Cell Wall Hydrolase Tmath_0811 PF00436 Single-strand binding protein family Tmath_0812 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Tmath_0813 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_0813 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Tmath_0813 PF14602 Hexapeptide repeat of succinyl-transferase Tmath_0814 PF01113 Dihydrodipicolinate reductase, N-terminus Tmath_0814 PF05173 Dihydrodipicolinate reductase, C-terminus Tmath_0815 PF00701 Dihydrodipicolinate synthetase family Tmath_0816 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tmath_0816 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tmath_0818 PF00005 ABC transporter Tmath_0818 PF00664 ABC transporter transmembrane region Tmath_0819 PF00005 ABC transporter Tmath_0819 PF00664 ABC transporter transmembrane region Tmath_0821 PF00120 Glutamine synthetase, catalytic domain Tmath_0821 PF03951 Glutamine synthetase, beta-Grasp domain Tmath_0822 PF00072 Response regulator receiver domain Tmath_0822 PF03861 ANTAR domain Tmath_0823 PF01979 Amidohydrolase family Tmath_0824 PF00155 Aminotransferase class I and II Tmath_0824 PF00392 Bacterial regulatory proteins, gntR family Tmath_0825 PF04519 Tmath_0825 Tmath_0826 PF01551 Peptidase family M23 Tmath_0827 PF03698 Tmath_0827 Tmath_0830 PF01966 HD domain Tmath_0831 PF12671 Tmath_0831 Tmath_0833 PF01343 Peptidase family S49 Tmath_0834 PF01909 Nucleotidyltransferase domain Tmath_0835 PF01934 Protein of unknown function DUF86 Tmath_0836 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tmath_0836 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tmath_0837 PF04260 Protein of unknown function (DUF436) Tmath_0841 PF00005 ABC transporter Tmath_0843 PF00395 S-layer homology domain Tmath_0843 PF03413 Peptidase propeptide and YPEB domain Tmath_0844 PF00704 Glycosyl hydrolases family 18 Tmath_0846 PF04024 Tmath_0846 Tmath_0847 PF00324 Amino acid permease Tmath_0848 PF04542 Sigma-70 region 2 Tmath_0848 PF08281 Sigma-70, region 4 Tmath_0849 PF13490 Putative zinc-finger Tmath_0849 PF14257 Tmath_0849 Tmath_0850 PF00476 DNA polymerase family A Tmath_0850 PF01367 5'-3' exonuclease, C-terminal SAM fold Tmath_0850 PF01612 3'-5' exonuclease Tmath_0850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tmath_0851 PF01121 Dephospho-CoA kinase Tmath_0853 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Tmath_0853 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Tmath_0854 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tmath_0856 PF00877 NlpC/P60 family Tmath_0856 PF08239 Bacterial SH3 domain Tmath_0857 PF00009 Elongation factor Tu GTP binding domain Tmath_0857 PF00679 Elongation factor G C-terminus Tmath_0857 PF03144 Elongation factor Tu domain 2 Tmath_0858 PF01464 Transglycosylase SLT domain Tmath_0860 PF07085 DRTGG domain Tmath_0861 PF13581 Histidine kinase-like ATPase domain Tmath_0862 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tmath_0862 PF04060 Putative Fe-S cluster Tmath_0862 PF13237 4Fe-4S dicluster domain Tmath_0863 PF07085 DRTGG domain Tmath_0864 PF02811 PHP domain Tmath_0865 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Tmath_0866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0868 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Tmath_0868 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tmath_0868 PF10531 SLBB domain Tmath_0868 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tmath_0868 PF12838 4Fe-4S dicluster domain Tmath_0869 PF02256 Iron hydrogenase small subunit Tmath_0869 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tmath_0869 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tmath_0869 PF12838 4Fe-4S dicluster domain Tmath_0869 PF13510 2Fe-2S iron-sulfur cluster binding domain Tmath_0870 PF14209 Tmath_0870 Tmath_0871 PF02545 Maf-like protein Tmath_0872 PF04002 RadC-like JAB domain Tmath_0873 PF06723 MreB/Mbl protein Tmath_0874 PF04085 rod shape-determining protein MreC Tmath_0875 PF04093 Tmath_0875 Tmath_0876 PF00905 Penicillin binding protein transpeptidase domain Tmath_0876 PF03717 Penicillin-binding Protein dimerisation domain Tmath_0877 PF03775 Septum formation inhibitor MinC, C-terminal domain Tmath_0878 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_0879 PF03776 Septum formation topological specificity factor MinE Tmath_0880 PF01098 Tmath_0880 Tmath_0881 PF02142 MGS-like domain Tmath_0882 PF01551 Peptidase family M23 Tmath_0884 PF04055 Radical SAM superfamily Tmath_0885 PF10105 Tmath_0885 Tmath_0886 PF00575 S1 RNA binding domain Tmath_0886 PF10150 Ribonuclease E/G family Tmath_0887 PF14489 QueF-like protein Tmath_0888 PF06177 Tmath_0888 Tmath_0889 PF06782 Tmath_0889 Tmath_0890 PF06782 Tmath_0890 Tmath_0891 PF06305 Tmath_0891 Tmath_0892 PF00829 Ribosomal prokaryotic L21 protein Tmath_0893 PF04327 Protein of unknown function (DUF464) Tmath_0894 PF01016 Ribosomal L27 protein Tmath_0895 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Tmath_0896 PF01018 GTP1/OBG Tmath_0896 PF01926 50S ribosome-binding GTPase Tmath_0896 PF09269 Domain of unknown function (DUF1967) Tmath_0898 PF01467 Cytidylyltransferase Tmath_0899 PF01966 HD domain Tmath_0900 PF03816 Cell envelope-related transcriptional attenuator domain Tmath_0900 PF13399 LytR cell envelope-related transcriptional attenuator Tmath_0901 PF02410 Oligomerisation domain Tmath_0902 PF08348 Tmath_0902 Tmath_0902 PF13309 Tmath_0902 Tmath_0903 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Tmath_0903 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_0904 PF02310 B12 binding domain Tmath_0905 PF00733 Asparagine synthase Tmath_0905 PF13537 Glutamine amidotransferase domain Tmath_0906 PF00768 D-alanyl-D-alanine carboxypeptidase Tmath_0906 PF07943 Penicillin-binding protein 5, C-terminal domain Tmath_0907 PF10531 SLBB domain Tmath_0907 PF12836 Helix-hairpin-helix motif Tmath_0909 PF04608 Phosphatidylglycerophosphatase A Tmath_0910 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tmath_0911 PF16264 Tmath_0911 Tmath_0912 PF11750 Tmath_0912 Tmath_0913 PF12838 4Fe-4S dicluster domain Tmath_0914 PF01063 Aminotransferase class IV Tmath_0916 PF09388 Spo0E like sporulation regulatory protein Tmath_0917 PF07155 ECF-type riboflavin transporter, S component Tmath_0918 PF13419 Haloacid dehalogenase-like hydrolase Tmath_0919 PF12706 Beta-lactamase superfamily domain Tmath_0920 PF00753 Metallo-beta-lactamase superfamily Tmath_0920 PF03772 Tmath_0920 Tmath_0920 PF13567 Tmath_0920 Tmath_0921 PF06144 DNA polymerase III, delta subunit Tmath_0922 PF01649 Ribosomal protein S20 Tmath_0923 PF03169 Tmath_0923 Tmath_0924 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Tmath_0926 PF04020 Tmath_0926 Tmath_0927 PF03418 Germination protease Tmath_0928 PF07454 Tmath_0928 Tmath_0930 PF00534 Glycosyl transferases group 1 Tmath_0930 PF13439 Glycosyltransferase Family 4 Tmath_0932 PF00009 Elongation factor Tu GTP binding domain Tmath_0932 PF00679 Elongation factor G C-terminus Tmath_0932 PF03144 Elongation factor Tu domain 2 Tmath_0932 PF06421 GTP-binding protein LepA C-terminus Tmath_0932 PF14492 Elongation Factor G, domain II Tmath_0933 PF04055 Radical SAM superfamily Tmath_0933 PF06969 HemN C-terminal domain Tmath_0934 PF01628 HrcA protein C terminal domain Tmath_0935 PF01025 GrpE Tmath_0936 PF00012 Hsp70 protein Tmath_0937 PF00226 DnaJ domain Tmath_0937 PF00684 DnaJ central domain Tmath_0937 PF01556 DnaJ C terminal domain Tmath_0938 PF06325 Ribosomal protein L11 methyltransferase (PrmA) Tmath_0939 PF04452 RNA methyltransferase Tmath_0940 PF13740 ACT domain Tmath_0941 PF05167 Uncharacterised ACR (DUF711) Tmath_0942 PF13192 Thioredoxin domain Tmath_0943 PF03773 Tmath_0943 Tmath_0944 PF01022 Bacterial regulatory protein, arsR family Tmath_0947 PF00072 Response regulator receiver domain Tmath_0947 PF00486 Transcriptional regulatory protein, C terminal Tmath_0948 PF00512 His Kinase A (phospho-acceptor) domain Tmath_0948 PF00672 HAMP domain Tmath_0948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_0949 PF00483 Nucleotidyl transferase Tmath_0950 PF13231 Tmath_0950 Tmath_0952 PF00535 Glycosyl transferase family 2 Tmath_0953 PF04138 Tmath_0953 Tmath_0954 PF13231 Tmath_0954 Tmath_0955 PF00919 Uncharacterized protein family UPF0004 Tmath_0955 PF01938 TRAM domain Tmath_0955 PF04055 Radical SAM superfamily Tmath_0956 PF01230 HIT domain Tmath_0957 PF01165 Ribosomal protein S21 Tmath_0958 PF09424 Yqey-like protein Tmath_0959 PF07873 YabP family Tmath_0960 PF06898 Tmath_0960 Tmath_0961 PF02562 PhoH-like protein Tmath_0962 PF01966 HD domain Tmath_0962 PF07697 Tmath_0962 Tmath_0962 PF07698 Tmath_0962 Tmath_0963 PF02130 Uncharacterized protein family UPF0054 Tmath_0964 PF01219 Prokaryotic diacylglycerol kinase Tmath_0964 PF01569 PAP2 superfamily Tmath_0965 PF01926 50S ribosome-binding GTPase Tmath_0965 PF07650 KH domain Tmath_0966 PF01791 DeoC/LacD family aldolase Tmath_0967 PF02565 Recombination protein O C terminal Tmath_0967 PF11967 Recombination protein O N terminal Tmath_0968 PF14242 Tmath_0968 Tmath_0969 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_0969 PF03129 Anticodon binding domain Tmath_0971 PF03618 Tmath_0971 Tmath_0972 PF00391 PEP-utilising enzyme, mobile domain Tmath_0972 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tmath_0972 PF02896 PEP-utilising enzyme, TIM barrel domain Tmath_0973 PF01966 HD domain Tmath_0974 PF00575 S1 RNA binding domain Tmath_0974 PF00773 RNB domain Tmath_0974 PF08206 Ribonuclease B OB domain Tmath_0975 PF01668 SmpB protein Tmath_0979 PF01381 Helix-turn-helix Tmath_0985 PF00005 ABC transporter Tmath_0987 PF13624 SurA N-terminal domain Tmath_0990 PF00005 ABC transporter Tmath_0990 PF00664 ABC transporter transmembrane region Tmath_0993 PF00005 ABC transporter Tmath_0994 PF06182 Tmath_0994 Tmath_0995 PF06182 Tmath_0995 Tmath_1000 PF06149 Tmath_1000 Tmath_1001 PF06166 Tmath_1001 Tmath_1002 PF01470 Pyroglutamyl peptidase Tmath_1003 PF00027 Cyclic nucleotide-binding domain Tmath_1003 PF13545 Crp-like helix-turn-helix domain Tmath_1004 PF01965 DJ-1/PfpI family Tmath_1005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tmath_1005 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1006 PF00561 alpha/beta hydrolase fold Tmath_1007 PF00037 4Fe-4S binding domain Tmath_1008 PF01435 Peptidase family M48 Tmath_1008 PF16491 Tmath_1008 Tmath_1009 PF02310 B12 binding domain Tmath_1009 PF04055 Radical SAM superfamily Tmath_1009 PF13311 Tmath_1009 Tmath_1010 PF01661 Macro domain Tmath_1011 PF02673 Tmath_1011 Tmath_1012 PF07441 Tmath_1012 Tmath_1013 PF14098 Tmath_1013 Tmath_1015 PF06961 Tmath_1015 Tmath_1016 PF00753 Metallo-beta-lactamase superfamily Tmath_1017 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tmath_1019 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tmath_1019 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_1020 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Tmath_1020 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Tmath_1021 PF04199 Putative cyclase Tmath_1023 PF01842 ACT domain Tmath_1023 PF03315 Serine dehydratase beta chain Tmath_1024 PF03313 Tmath_1024 Tmath_1025 PF01432 Peptidase family M3 Tmath_1025 PF08439 Oligopeptidase F Tmath_1026 PF01761 3-dehydroquinate synthase Tmath_1027 PF00800 Prephenate dehydratase Tmath_1027 PF01842 ACT domain Tmath_1028 PF00793 DAHP synthetase I family Tmath_1029 PF02153 Prephenate dehydrogenase Tmath_1030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_1032 PF01476 LysM domain Tmath_1032 PF07486 Cell Wall Hydrolase Tmath_1033 PF01169 Tmath_1033 Tmath_1036 PF00072 Response regulator receiver domain Tmath_1036 PF00486 Transcriptional regulatory protein, C terminal Tmath_1037 PF00512 His Kinase A (phospho-acceptor) domain Tmath_1037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1038 PF09851 Tmath_1038 Tmath_1040 PF00480 ROK family Tmath_1040 PF13412 Winged helix-turn-helix DNA-binding Tmath_1041 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Tmath_1042 PF00501 AMP-binding enzyme Tmath_1043 PF02683 Tmath_1043 Tmath_1044 PF00578 AhpC/TSA family Tmath_1045 PF01276 Orn/Lys/Arg decarboxylase, major domain Tmath_1045 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tmath_1046 PF00111 2Fe-2S iron-sulfur cluster binding domain Tmath_1046 PF14574 Domain of unknown function (DUF4445) Tmath_1047 PF09818 Predicted ATPase of the ABC class Tmath_1048 PF00037 4Fe-4S binding domain Tmath_1048 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tmath_1050 PF01926 50S ribosome-binding GTPase Tmath_1050 PF13167 Tmath_1050 Tmath_1050 PF16360 Tmath_1050 Tmath_1051 PF11385 Tmath_1051 Tmath_1052 PF00293 NUDIX domain Tmath_1053 PF01205 Uncharacterized protein family UPF0029 Tmath_1053 PF09186 Domain of unknown function (DUF1949) Tmath_1054 PF13380 CoA binding domain Tmath_1055 PF01925 Tmath_1055 Tmath_1056 PF01925 Tmath_1056 Tmath_1057 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_1058 PF01709 Transcriptional regulator Tmath_1059 PF01584 CheW-like domain Tmath_1061 PF02075 Crossover junction endodeoxyribonuclease RuvC Tmath_1062 PF01330 RuvA N terminal domain Tmath_1062 PF07499 RuvA, C-terminal domain Tmath_1062 PF14520 Helix-hairpin-helix domain Tmath_1063 PF05491 Holliday junction DNA helicase ruvB C-terminus Tmath_1063 PF05496 Holliday junction DNA helicase ruvB N-terminus Tmath_1064 PF11146 Tmath_1064 Tmath_1065 PF08486 Tmath_1065 Tmath_1066 PF02547 Queuosine biosynthesis protein Tmath_1067 PF01702 Queuine tRNA-ribosyltransferase Tmath_1068 PF02699 Preprotein translocase subunit Tmath_1069 PF12670 Tmath_1069 Tmath_1070 PF13165 Tmath_1070 Tmath_1071 PF04055 Radical SAM superfamily Tmath_1071 PF13186 Iron-sulfur cluster-binding domain Tmath_1071 PF13353 4Fe-4S single cluster domain Tmath_1072 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_1073 PF02355 Protein export membrane protein Tmath_1074 PF02355 Protein export membrane protein Tmath_1074 PF07549 SecD/SecF GG Motif Tmath_1075 PF03109 Tmath_1075 Tmath_1076 PF01368 DHH family Tmath_1076 PF02272 DHHA1 domain Tmath_1076 PF10141 Tmath_1076 Tmath_1077 PF00156 Phosphoribosyl transferase domain Tmath_1078 PF02824 TGS domain Tmath_1078 PF04607 Region found in RelA / SpoT proteins Tmath_1078 PF13291 ACT domain Tmath_1078 PF13328 HD domain Tmath_1079 PF02580 D-Tyr-tRNA(Tyr) deacylase Tmath_1080 PF00753 Metallo-beta-lactamase superfamily Tmath_1081 PF02687 Tmath_1081 Tmath_1081 PF12704 MacB-like periplasmic core domain Tmath_1082 PF00005 ABC transporter Tmath_1083 PF16576 Tmath_1083 Tmath_1084 PF12802 MarR family Tmath_1086 PF03129 Anticodon binding domain Tmath_1086 PF13393 Histidyl-tRNA synthetase Tmath_1087 PF00152 tRNA synthetases class II (D, K and N) Tmath_1087 PF01336 OB-fold nucleic acid binding domain Tmath_1087 PF02938 GAD domain Tmath_1088 PF00899 ThiF family Tmath_1089 PF02583 Metal-sensitive transcriptional repressor Tmath_1090 PF00085 Thioredoxin Tmath_1092 PF01168 Alanine racemase, N-terminal domain Tmath_1093 PF02082 Transcriptional regulator Tmath_1095 PF01594 Tmath_1095 Tmath_1096 PF01411 tRNA synthetases class II (A) Tmath_1096 PF02272 DHHA1 domain Tmath_1096 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1097 PF06135 Tmath_1097 Tmath_1098 PF03652 Uncharacterised protein family (UPF0081) Tmath_1099 PF06949 Tmath_1099 Tmath_1100 PF01475 Ferric uptake regulator family Tmath_1101 PF00753 Metallo-beta-lactamase superfamily Tmath_1101 PF07521 RNA-metabolising metallo-beta-lactamase Tmath_1102 PF06133 Protein of unknown function (DUF964) Tmath_1103 PF06177 Tmath_1103 Tmath_1104 PF02618 YceG-like family Tmath_1105 PF01596 O-methyltransferase Tmath_1106 PF01136 Tmath_1106 Tmath_1106 PF16325 Tmath_1106 Tmath_1107 PF00905 Penicillin binding protein transpeptidase domain Tmath_1108 PF04542 Sigma-70 region 2 Tmath_1108 PF04545 Sigma-70, region 4 Tmath_1109 PF09419 Tmath_1109 Tmath_1110 PF01488 Shikimate / quinate 5-dehydrogenase Tmath_1110 PF08501 Shikimate dehydrogenase substrate binding domain Tmath_1111 PF00437 Type II/IV secretion system protein Tmath_1111 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Tmath_1112 PF00437 Type II/IV secretion system protein Tmath_1113 PF00482 Type II secretion system (T2SS), protein F Tmath_1114 PF07963 Prokaryotic N-terminal methylation motif Tmath_1115 PF01478 Type IV leader peptidase family Tmath_1115 PF06750 Tmath_1115 Tmath_1116 PF07963 Prokaryotic N-terminal methylation motif Tmath_1117 PF07963 Prokaryotic N-terminal methylation motif Tmath_1118 PF07963 Prokaryotic N-terminal methylation motif Tmath_1119 PF14341 Tmath_1119 Tmath_1120 PF10719 Tmath_1120 Tmath_1121 PF11104 Type IV pilus assembly protein PilM; Tmath_1122 PF05137 Tmath_1122 Tmath_1123 PF04350 Pilus assembly protein, PilO Tmath_1124 PF01202 Shikimate kinase Tmath_1125 PF01261 Xylose isomerase-like TIM barrel Tmath_1126 PF00696 Amino acid kinase family Tmath_1126 PF01472 PUA domain Tmath_1127 PF00171 Aldehyde dehydrogenase family Tmath_1128 PF01220 Dehydroquinase class II Tmath_1129 PF00557 Metallopeptidase family M24 Tmath_1129 PF01321 Creatinase/Prolidase N-terminal domain Tmath_1130 PF01132 Elongation factor P (EF-P) OB domain Tmath_1130 PF08207 Elongation factor P (EF-P) KOW-like domain Tmath_1130 PF09285 Elongation factor P, C-terminal Tmath_1133 PF09548 Tmath_1133 Tmath_1134 PF06686 Tmath_1134 Tmath_1135 PF06686 Tmath_1135 Tmath_1136 PF09546 Tmath_1136 Tmath_1137 PF09581 Tmath_1137 Tmath_1139 PF12685 SpoIIIAH-like protein Tmath_1140 PF03780 Tmath_1140 Tmath_1141 PF01029 NusB family Tmath_1142 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tmath_1142 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tmath_1143 PF02601 Tmath_1143 Tmath_1143 PF13742 Tmath_1143 Tmath_1144 PF02609 Exonuclease VII small subunit Tmath_1145 PF00348 Polyprenyl synthetase Tmath_1147 PF02779 Transketolase, pyrimidine binding domain Tmath_1147 PF02780 Transketolase, C-terminal domain Tmath_1147 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tmath_1148 PF01479 S4 domain Tmath_1148 PF01728 FtsJ-like methyltransferase Tmath_1149 PF01513 ATP-NAD kinase Tmath_1150 PF01316 Arginine repressor, DNA binding domain Tmath_1150 PF02863 Arginine repressor, C-terminal domain Tmath_1151 PF02463 RecF/RecN/SMC N terminal domain Tmath_1152 PF05580 Tmath_1152 Tmath_1153 PF00072 Response regulator receiver domain Tmath_1153 PF08769 Sporulation initiation factor Spo0A C terminal Tmath_1154 PF12555 Tmath_1154 Tmath_1155 PF11382 Tmath_1155 Tmath_1156 PF00535 Glycosyl transferase family 2 Tmath_1157 PF00953 Glycosyl transferase family 4 Tmath_1158 PF12982 Tmath_1158 Tmath_1160 PF00293 NUDIX domain Tmath_1161 PF13263 PHP-associated Tmath_1162 PF01944 Tmath_1162 Tmath_1163 PF00589 Phage integrase family Tmath_1163 PF02899 Phage integrase, N-terminal SAM-like domain Tmath_1164 PF00768 D-alanyl-D-alanine carboxypeptidase Tmath_1164 PF07943 Penicillin-binding protein 5, C-terminal domain Tmath_1165 PF01740 STAS domain Tmath_1166 PF13581 Histidine kinase-like ATPase domain Tmath_1167 PF04539 Sigma-70 region 3 Tmath_1167 PF04542 Sigma-70 region 2 Tmath_1167 PF04545 Sigma-70, region 4 Tmath_1168 PF07311 Dodecin Tmath_1169 PF03862 Tmath_1169 Tmath_1170 PF07451 Stage V sporulation protein AD (SpoVAD) Tmath_1171 PF03862 Tmath_1171 Tmath_1172 PF01743 Poly A polymerase head domain Tmath_1172 PF12627 Probable RNA and SrmB- binding site of polymerase A Tmath_1174 PF02616 ScpA/B protein Tmath_1175 PF04079 Putative transcriptional regulators (Ypuh-like) Tmath_1176 PF06207 Tmath_1176 Tmath_1178 PF09579 Tmath_1178 Tmath_1179 PF00768 D-alanyl-D-alanine carboxypeptidase Tmath_1179 PF07943 Penicillin-binding protein 5, C-terminal domain Tmath_1181 PF01134 Glucose inhibited division protein A Tmath_1182 PF00849 RNA pseudouridylate synthase Tmath_1182 PF01479 S4 domain Tmath_1183 PF13673 Acetyltransferase (GNAT) domain Tmath_1184 PF01564 Spermine/spermidine synthase Tmath_1184 PF17284 Tmath_1184 Tmath_1185 PF00491 Arginase family Tmath_1186 PF00682 HMGL-like Tmath_1186 PF02436 Conserved carboxylase domain Tmath_1187 PF01476 LysM domain Tmath_1189 PF01975 Survival protein SurE Tmath_1191 PF01380 SIS domain Tmath_1191 PF01418 Helix-turn-helix domain, rpiR family Tmath_1192 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tmath_1192 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tmath_1194 PF00300 Histidine phosphatase superfamily (branch 1) Tmath_1195 PF03486 HI0933-like protein Tmath_1197 PF07736 Chorismate mutase type I Tmath_1198 PF02224 Cytidylate kinase Tmath_1199 PF01553 Acyltransferase Tmath_1200 PF02401 LytB protein Tmath_1201 PF02675 S-adenosylmethionine decarboxylase Tmath_1202 PF01739 CheR methyltransferase, SAM binding domain Tmath_1202 PF03705 CheR methyltransferase, all-alpha domain Tmath_1203 PF00919 Uncharacterized protein family UPF0004 Tmath_1203 PF01938 TRAM domain Tmath_1203 PF04055 Radical SAM superfamily Tmath_1204 PF00488 MutS domain V Tmath_1204 PF01624 MutS domain I Tmath_1204 PF05188 MutS domain II Tmath_1204 PF05190 MutS family domain IV Tmath_1204 PF05192 MutS domain III Tmath_1206 PF01715 IPP transferase Tmath_1207 PF17209 Tmath_1207 Tmath_1208 PF03807 NADP oxidoreductase coenzyme F420-dependent Tmath_1208 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tmath_1209 PF00075 RNase H Tmath_1210 PF00589 Phage integrase family Tmath_1210 PF02899 Phage integrase, N-terminal SAM-like domain Tmath_1211 PF06838 Methionine gamma-lyase Tmath_1212 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1213 PF00206 Lyase Tmath_1213 PF10397 Adenylosuccinate lyase C-terminus Tmath_1214 PF00155 Aminotransferase class I and II Tmath_1215 PF02811 PHP domain Tmath_1216 PF04232 Stage V sporulation protein S (SpoVS) Tmath_1217 PF13277 YmdB-like protein Tmath_1218 PF00013 KH domain Tmath_1218 PF01966 HD domain Tmath_1218 PF12072 Tmath_1218 Tmath_1219 PF02631 RecX family Tmath_1220 PF00154 recA bacterial DNA recombination protein Tmath_1221 PF00994 Probable molybdopterin binding domain Tmath_1221 PF02464 Competence-damaged protein Tmath_1222 PF01066 CDP-alcohol phosphatidyltransferase Tmath_1223 PF00919 Uncharacterized protein family UPF0004 Tmath_1223 PF01938 TRAM domain Tmath_1223 PF04055 Radical SAM superfamily Tmath_1224 PF01580 FtsK/SpoIIIE family Tmath_1224 PF09397 Ftsk gamma domain Tmath_1224 PF13491 Tmath_1224 Tmath_1225 PF14035 Tmath_1225 Tmath_1226 PF00574 Clp protease Tmath_1227 PF00696 Amino acid kinase family Tmath_1227 PF13840 ACT domain Tmath_1228 PF05239 PRC-barrel domain Tmath_1229 PF00692 dUTPase Tmath_1230 PF00675 Insulinase (Peptidase family M16) Tmath_1230 PF05193 Peptidase M16 inactive domain Tmath_1231 PF01522 Polysaccharide deacetylase Tmath_1232 PF00013 KH domain Tmath_1232 PF00575 S1 RNA binding domain Tmath_1232 PF01138 3' exoribonuclease family, domain 1 Tmath_1232 PF03725 3' exoribonuclease family, domain 2 Tmath_1232 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tmath_1233 PF00312 Ribosomal protein S15 Tmath_1234 PF01687 Riboflavin kinase Tmath_1234 PF06574 FAD synthetase Tmath_1235 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tmath_1235 PF09157 Pseudouridine synthase II TruB, C-terminal Tmath_1235 PF16198 Tmath_1235 Tmath_1236 PF01368 DHH family Tmath_1236 PF02272 DHHA1 domain Tmath_1237 PF02033 Ribosome-binding factor A Tmath_1238 PF00009 Elongation factor Tu GTP binding domain Tmath_1238 PF04760 Translation initiation factor IF-2, N-terminal region Tmath_1238 PF11987 Translation-initiation factor 2 Tmath_1239 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Tmath_1240 PF04296 Protein of unknown function (DUF448) Tmath_1241 PF00575 S1 RNA binding domain Tmath_1241 PF08529 NusA N-terminal domain Tmath_1241 PF13184 NusA-like KH domain Tmath_1242 PF02576 Uncharacterised BCR, YhbC family COG0779 Tmath_1242 PF17384 Tmath_1242 Tmath_1243 PF00929 Exonuclease Tmath_1243 PF02811 PHP domain Tmath_1243 PF07733 Bacterial DNA polymerase III alpha subunit Tmath_1243 PF11490 Tmath_1243 Tmath_1243 PF14579 Helix-hairpin-helix motif Tmath_1244 PF00535 Glycosyl transferase family 2 Tmath_1245 PF04551 GcpE protein Tmath_1246 PF02163 Peptidase family M50 Tmath_1246 PF13180 PDZ domain Tmath_1247 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tmath_1247 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Tmath_1247 PF13288 DXP reductoisomerase C-terminal domain Tmath_1248 PF01148 Cytidylyltransferase family Tmath_1249 PF01255 Putative undecaprenyl diphosphate synthase Tmath_1251 PF01765 Ribosome recycling factor Tmath_1252 PF00696 Amino acid kinase family Tmath_1253 PF00889 Elongation factor TS Tmath_1254 PF00318 Ribosomal protein S2 Tmath_1256 PF03961 Tmath_1256 Tmath_1257 PF04539 Sigma-70 region 3 Tmath_1257 PF04542 Sigma-70 region 2 Tmath_1257 PF04545 Sigma-70, region 4 Tmath_1258 PF03975 CheD chemotactic sensory transduction Tmath_1259 PF04509 CheC-like family Tmath_1260 PF01584 CheW-like domain Tmath_1261 PF01584 CheW-like domain Tmath_1261 PF01627 Hpt domain Tmath_1261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1261 PF02895 Signal transducing histidine kinase, homodimeric domain Tmath_1261 PF07194 P2 response regulator binding domain Tmath_1262 PF01339 CheB methylesterase Tmath_1263 PF07238 PilZ domain Tmath_1263 PF12945 Flagellar protein YcgR Tmath_1264 PF13614 AAA domain Tmath_1265 PF00448 SRP54-type protein, GTPase domain Tmath_1266 PF00771 FHIPEP family Tmath_1267 PF01312 FlhB HrpN YscU SpaS Family Tmath_1268 PF01311 Tmath_1268 Tmath_1269 PF01313 Tmath_1269 Tmath_1270 PF00813 Tmath_1270 Tmath_1271 PF04347 Tmath_1271 Tmath_1272 PF00072 Response regulator receiver domain Tmath_1273 PF01052 Surface presentation of antigens (SPOA) Tmath_1273 PF04509 CheC-like family Tmath_1274 PF01052 Surface presentation of antigens (SPOA) Tmath_1274 PF02154 Flagellar motor switch protein FliM Tmath_1275 PF03748 Tmath_1275 Tmath_1276 PF06289 Tmath_1276 Tmath_1277 PF00460 Flagella basal body rod protein Tmath_1277 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_1277 PF07559 Flagellar basal body protein FlaE Tmath_1278 PF12611 Tmath_1278 Tmath_1279 PF03963 Tmath_1279 Tmath_1280 PF02120 Flagellar hook-length control protein FliK Tmath_1281 PF03448 MgtE intracellular N domain Tmath_1282 PF02050 Flagellar FliJ protein Tmath_1283 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_1283 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_1284 PF02108 Tmath_1284 Tmath_1285 PF01706 FliG C-terminal domain Tmath_1285 PF14841 FliG middle domain Tmath_1285 PF14842 FliG N-terminal domain Tmath_1286 PF01514 Secretory protein of YscJ/FliF family Tmath_1286 PF08345 Tmath_1286 Tmath_1287 PF02049 Tmath_1287 Tmath_1288 PF00460 Flagella basal body rod protein Tmath_1288 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tmath_1289 PF00460 Flagella basal body rod protein Tmath_1290 PF06018 CodY GAF-like domain Tmath_1290 PF08222 CodY helix-turn-helix domain Tmath_1291 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1291 PF07724 AAA domain (Cdc48 subfamily) Tmath_1291 PF10431 C-terminal, D2-small domain, of ClpB protein Tmath_1292 PF00227 Proteasome subunit Tmath_1293 PF01131 DNA topoisomerase Tmath_1293 PF01396 Tmath_1293 Tmath_1293 PF01751 Toprim domain Tmath_1294 PF01978 Sugar-specific transcriptional regulator TrmB Tmath_1294 PF02481 DNA recombination-mediator protein A Tmath_1295 PF01351 Ribonuclease HII Tmath_1296 PF02021 Uncharacterised protein family UPF0102 Tmath_1297 PF00579 tRNA synthetases class I (W and Y) Tmath_1298 PF02588 Tmath_1298 Tmath_1298 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tmath_1299 PF01078 Magnesium chelatase, subunit ChlI Tmath_1299 PF13335 Tmath_1299 Tmath_1299 PF13541 Subunit ChlI of Mg-chelatase Tmath_1300 PF01926 50S ribosome-binding GTPase Tmath_1301 PF01245 Ribosomal protein L19 Tmath_1302 PF01746 tRNA (Guanine-1)-methyltransferase Tmath_1303 PF01782 RimM N-terminal domain Tmath_1303 PF05239 PRC-barrel domain Tmath_1304 PF13083 KH domain Tmath_1305 PF00886 Ribosomal protein S16 Tmath_1306 PF00448 SRP54-type protein, GTPase domain Tmath_1306 PF02881 SRP54-type protein, helical bundle domain Tmath_1306 PF02978 Signal peptide binding domain Tmath_1307 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Tmath_1308 PF00448 SRP54-type protein, GTPase domain Tmath_1308 PF02881 SRP54-type protein, helical bundle domain Tmath_1309 PF02463 RecF/RecN/SMC N terminal domain Tmath_1309 PF06470 SMC proteins Flexible Hinge Domain Tmath_1311 PF04232 Stage V sporulation protein S (SpoVS) Tmath_1312 PF04055 Radical SAM superfamily Tmath_1312 PF16199 Tmath_1312 Tmath_1313 PF01174 SNO glutamine amidotransferase family Tmath_1314 PF01680 SOR/SNZ family Tmath_1315 PF04055 Radical SAM superfamily Tmath_1315 PF06968 Biotin and Thiamin Synthesis associated domain Tmath_1316 PF01493 GXGXG motif Tmath_1317 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1318 PF13247 4Fe-4S dicluster domain Tmath_1319 PF01645 Conserved region in glutamate synthase Tmath_1319 PF13187 4Fe-4S dicluster domain Tmath_1320 PF00310 Glutamine amidotransferases class-II Tmath_1321 PF00117 Glutamine amidotransferase class-I Tmath_1323 PF00543 Nitrogen regulatory protein P-II Tmath_1324 PF00909 Ammonium Transporter Family Tmath_1325 PF00120 Glutamine synthetase, catalytic domain Tmath_1325 PF12437 Glutamine synthetase type III N terminal Tmath_1327 PF00035 Double-stranded RNA binding motif Tmath_1327 PF14622 Ribonuclease-III-like Tmath_1328 PF00109 Beta-ketoacyl synthase, N-terminal domain Tmath_1328 PF02801 Beta-ketoacyl synthase, C-terminal domain Tmath_1329 PF00550 Phosphopantetheine attachment site Tmath_1330 PF13561 Enoyl-(Acyl carrier protein) reductase Tmath_1331 PF00698 Acyl transferase domain Tmath_1332 PF03060 Nitronate monooxygenase Tmath_1333 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Tmath_1333 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Tmath_1334 PF02504 Fatty acid synthesis protein Tmath_1336 PF01783 Ribosomal L32p protein family Tmath_1337 PF02620 Tmath_1337 Tmath_1338 PF00871 Acetokinase family Tmath_1339 PF01515 Phosphate acetyl/butaryl transferase Tmath_1340 PF05636 HIGH Nucleotidyl Transferase Tmath_1341 PF07670 Nucleoside recognition Tmath_1343 PF01467 Cytidylyltransferase Tmath_1344 PF03602 Conserved hypothetical protein 95 Tmath_1345 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_1346 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_1347 PF02645 Uncharacterised protein, DegV family COG1307 Tmath_1348 PF00270 DEAD/DEAH box helicase Tmath_1348 PF00271 Helicase conserved C-terminal domain Tmath_1348 PF17191 Tmath_1348 Tmath_1349 PF02734 DAK2 domain Tmath_1349 PF13684 Dihydroxyacetone kinase family Tmath_1350 PF03780 Tmath_1350 Tmath_1351 PF00830 Ribosomal L28 family Tmath_1353 PF04263 Thiamin pyrophosphokinase, catalytic domain Tmath_1353 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain Tmath_1354 PF00834 Ribulose-phosphate 3 epimerase family Tmath_1355 PF03193 Protein of unknown function, DUF258 Tmath_1355 PF16745 Tmath_1355 Tmath_1356 PF00069 Protein kinase domain Tmath_1356 PF03793 PASTA domain Tmath_1357 PF13672 Protein phosphatase 2C Tmath_1358 PF04055 Radical SAM superfamily Tmath_1358 PF13394 4Fe-4S single cluster domain Tmath_1359 PF01029 NusB family Tmath_1359 PF01189 NOL1/NOP2/sun family Tmath_1359 PF17125 Tmath_1359 Tmath_1360 PF04298 Tmath_1360 Tmath_1361 PF01976 Tmath_1361 Tmath_1362 PF00551 Formyl transferase Tmath_1362 PF02911 Formyl transferase, C-terminal domain Tmath_1363 PF01327 Polypeptide deformylase Tmath_1364 PF00270 DEAD/DEAH box helicase Tmath_1364 PF00271 Helicase conserved C-terminal domain Tmath_1365 PF02441 Flavoprotein Tmath_1365 PF04127 DNA / pantothenate metabolism flavoprotein Tmath_1366 PF01192 RNA polymerase Rpb6 Tmath_1367 PF00625 Guanylate kinase Tmath_1368 PF04025 Tmath_1368 Tmath_1369 PF03755 Tmath_1369 Tmath_1369 PF08340 Tmath_1369 Tmath_1370 PF01678 Diaminopimelate epimerase Tmath_1371 PF00083 Sugar (and other) transporter Tmath_1371 PF07690 Major Facilitator Superfamily Tmath_1373 PF05670 Tmath_1373 Tmath_1373 PF05833 Fibronectin-binding protein A N-terminus (FbpA) Tmath_1374 PF02834 LigT like Phosphoesterase Tmath_1375 PF00005 ABC transporter Tmath_1375 PF09383 NIL domain Tmath_1376 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1377 PF03180 NLPA lipoprotein Tmath_1379 PF01171 PP-loop family Tmath_1380 PF10672 S-adenosylmethionine-dependent methyltransferase Tmath_1381 PF01471 Putative peptidoglycan binding domain Tmath_1382 PF00156 Phosphoribosyl transferase domain Tmath_1383 PF01180 Dihydroorotate dehydrogenase Tmath_1384 PF00970 Oxidoreductase FAD-binding domain Tmath_1384 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_1385 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tmath_1386 PF01979 Amidohydrolase family Tmath_1387 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tmath_1387 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tmath_1388 PF00156 Phosphoribosyl transferase domain Tmath_1389 PF00586 AIR synthase related protein, N-terminal domain Tmath_1389 PF02769 AIR synthase related protein, C-terminal domain Tmath_1390 PF00849 RNA pseudouridylate synthase Tmath_1390 PF01479 S4 domain Tmath_1391 PF01252 Tmath_1391 Tmath_1392 PF13302 Acetyltransferase (GNAT) domain Tmath_1393 PF01863 Protein of unknown function DUF45 Tmath_1394 PF04411 Tmath_1394 Tmath_1394 PF09823 Tmath_1394 Tmath_1395 PF07728 AAA domain (dynein-related subfamily) Tmath_1395 PF12102 Domain of unknown function (DUF3578) Tmath_1397 PF07883 Cupin domain Tmath_1398 PF12682 Flavodoxin Tmath_1399 PF00756 Putative esterase Tmath_1400 PF00248 Aldo/keto reductase family Tmath_1401 PF14534 Domain of unknown function (DUF4440) Tmath_1402 PF00465 Iron-containing alcohol dehydrogenase Tmath_1403 PF00248 Aldo/keto reductase family Tmath_1404 PF01548 Tmath_1404 Tmath_1405 PF01741 Large-conductance mechanosensitive channel, MscL Tmath_1406 PF01925 Tmath_1406 Tmath_1407 PF04542 Sigma-70 region 2 Tmath_1407 PF08281 Sigma-70, region 4 Tmath_1408 PF13791 Tmath_1408 Tmath_1408 PF13800 Tmath_1408 Tmath_1409 PF01841 Transglutaminase-like superfamily Tmath_1409 PF07833 Copper amine oxidase N-terminal domain Tmath_1410 PF04024 Tmath_1410 Tmath_1411 PF01894 Uncharacterised protein family UPF0047 Tmath_1412 PF01258 Prokaryotic dksA/traR C4-type zinc finger Tmath_1414 PF01053 Cys/Met metabolism PLP-dependent enzyme Tmath_1416 PF00793 DAHP synthetase I family Tmath_1417 PF00290 Tryptophan synthase alpha chain Tmath_1418 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_1419 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Tmath_1420 PF00218 Indole-3-glycerol phosphate synthase Tmath_1421 PF00591 Glycosyl transferase family, a/b domain Tmath_1421 PF02885 Glycosyl transferase family, helical bundle domain Tmath_1422 PF00117 Glutamine amidotransferase class-I Tmath_1423 PF00425 chorismate binding enzyme Tmath_1423 PF04715 Anthranilate synthase component I, N terminal region Tmath_1424 PF01910 Domain of unknown function DUF77 Tmath_1425 PF01053 Cys/Met metabolism PLP-dependent enzyme Tmath_1426 PF01048 Phosphorylase superfamily Tmath_1427 PF01008 Initiation factor 2 subunit family Tmath_1428 PF00596 Class II Aldolase and Adducin N-terminal domain Tmath_1429 PF01312 FlhB HrpN YscU SpaS Family Tmath_1431 PF01979 Amidohydrolase family Tmath_1432 PF00133 tRNA synthetases class I (I, L, M and V) Tmath_1432 PF06827 Zinc finger found in FPG and IleRS Tmath_1432 PF08264 Anticodon-binding domain of tRNA Tmath_1434 PF05103 DivIVA protein Tmath_1435 PF01479 S4 domain Tmath_1436 PF02325 Tmath_1436 Tmath_1437 PF04472 Protein of unknown function (DUF552) Tmath_1438 PF01168 Alanine racemase, N-terminal domain Tmath_1440 PF01042 Endoribonuclease L-PSP Tmath_1441 PF02595 Glycerate kinase family Tmath_1442 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_1442 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Tmath_1443 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Tmath_1444 PF09547 Tmath_1444 Tmath_1445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tmath_1445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tmath_1446 PF02660 Tmath_1446 Tmath_1447 PF01926 50S ribosome-binding GTPase Tmath_1447 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tmath_1448 PF04459 Tmath_1448 Tmath_1449 PF11385 Tmath_1449 Tmath_1450 PF11385 Tmath_1450 Tmath_1452 PF14045 Tmath_1452 Tmath_1453 PF07454 Tmath_1453 Tmath_1454 PF07758 Tmath_1454 Tmath_1455 PF01895 PhoU domain Tmath_1456 PF00005 ABC transporter Tmath_1458 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1459 PF12849 PBP superfamily domain Tmath_1460 PF00512 His Kinase A (phospho-acceptor) domain Tmath_1460 PF00989 PAS fold Tmath_1460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1461 PF00072 Response regulator receiver domain Tmath_1461 PF00486 Transcriptional regulatory protein, C terminal Tmath_1462 PF03477 ATP cone domain Tmath_1463 PF05239 PRC-barrel domain Tmath_1464 PF04539 Sigma-70 region 3 Tmath_1464 PF04542 Sigma-70 region 2 Tmath_1464 PF04545 Sigma-70, region 4 Tmath_1465 PF04542 Sigma-70 region 2 Tmath_1465 PF04545 Sigma-70, region 4 Tmath_1466 PF03419 Tmath_1466 Tmath_1467 PF00091 Tubulin/FtsZ family, GTPase domain Tmath_1467 PF12327 FtsZ family, C-terminal domain Tmath_1468 PF02491 SHS2 domain inserted in FTSA Tmath_1468 PF14450 Cell division protein FtsA Tmath_1469 PF06947 Tmath_1469 Tmath_1470 PF05949 Bacterial protein of unknown function (DUF881) Tmath_1471 PF08478 POTRA domain, FtsQ-type Tmath_1472 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_1473 PF03033 Glycosyltransferase family 28 N-terminal domain Tmath_1473 PF04101 Glycosyltransferase family 28 C-terminal domain Tmath_1474 PF01098 Tmath_1474 Tmath_1475 PF02875 Mur ligase family, glutamate ligase domain Tmath_1475 PF08245 Mur ligase middle domain Tmath_1476 PF00953 Glycosyl transferase family 4 Tmath_1476 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Tmath_1477 PF01225 Mur ligase family, catalytic domain Tmath_1477 PF02875 Mur ligase family, glutamate ligase domain Tmath_1477 PF08245 Mur ligase middle domain Tmath_1478 PF01225 Mur ligase family, catalytic domain Tmath_1478 PF02875 Mur ligase family, glutamate ligase domain Tmath_1478 PF08245 Mur ligase middle domain Tmath_1479 PF00905 Penicillin binding protein transpeptidase domain Tmath_1479 PF03717 Penicillin-binding Protein dimerisation domain Tmath_1479 PF03793 PASTA domain Tmath_1480 PF04977 Septum formation initiator Tmath_1481 PF01795 MraW methylase family Tmath_1482 PF02381 MraZ protein Tmath_1483 PF00675 Insulinase (Peptidase family M16) Tmath_1483 PF05193 Peptidase M16 inactive domain Tmath_1484 PF05193 Peptidase M16 inactive domain Tmath_1485 PF09580 Tmath_1485 Tmath_1486 PF01926 50S ribosome-binding GTPase Tmath_1486 PF06071 Protein of unknown function (DUF933) Tmath_1487 PF09862 Tmath_1487 Tmath_1488 PF02568 Thiamine biosynthesis protein (ThiI) Tmath_1488 PF02926 THUMP domain Tmath_1489 PF00266 Aminotransferase class-V Tmath_1490 PF02583 Metal-sensitive transcriptional repressor Tmath_1492 PF02915 Rubrerythrin Tmath_1493 PF04055 Radical SAM superfamily Tmath_1494 PF03099 Biotin/lipoate A/B protein ligase family Tmath_1495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tmath_1495 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1497 PF01381 Helix-turn-helix Tmath_1500 PF03811 Tmath_1500 Tmath_1500 PF13610 Tmath_1500 Tmath_1501 PF00753 Metallo-beta-lactamase superfamily Tmath_1503 PF08279 HTH domain Tmath_1503 PF13481 AAA domain Tmath_1511 PF00239 Resolvase, N terminal domain Tmath_1511 PF07508 Recombinase Tmath_1511 PF13408 Recombinase zinc beta ribbon domain Tmath_1512 PF11823 Tmath_1512 Tmath_1514 PF02127 Aminopeptidase I zinc metalloprotease (M18) Tmath_1515 PF00072 Response regulator receiver domain Tmath_1515 PF00196 Bacterial regulatory proteins, luxR family Tmath_1516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1516 PF05384 Tmath_1516 Tmath_1516 PF07730 Histidine kinase Tmath_1517 PF09560 Tmath_1517 Tmath_1518 PF04463 Tmath_1518 Tmath_1519 PF00488 MutS domain V Tmath_1519 PF01713 Smr domain Tmath_1520 PF01136 Tmath_1520 Tmath_1520 PF12392 Tmath_1520 Tmath_1521 PF05164 Cell division protein ZapA Tmath_1522 PF01588 Putative tRNA binding domain Tmath_1522 PF03147 Ferredoxin-fold anticodon binding domain Tmath_1522 PF03483 B3/4 domain Tmath_1522 PF03484 tRNA synthetase B5 domain Tmath_1523 PF01409 tRNA synthetases class II core domain (F) Tmath_1523 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Tmath_1524 PF00588 SpoU rRNA Methylase family Tmath_1524 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tmath_1525 PF00453 Ribosomal protein L20 Tmath_1526 PF01632 Ribosomal protein L35 Tmath_1527 PF00707 Translation initiation factor IF-3, C-terminal domain Tmath_1527 PF05198 Translation initiation factor IF-3, N-terminal domain Tmath_1528 PF01264 Chorismate synthase Tmath_1529 PF07690 Major Facilitator Superfamily Tmath_1530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_1530 PF02824 TGS domain Tmath_1530 PF03129 Anticodon binding domain Tmath_1530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1531 PF04286 Tmath_1531 Tmath_1532 PF08812 Tmath_1532 Tmath_1534 PF00085 Thioredoxin Tmath_1535 PF01430 Hsp33 protein Tmath_1536 PF00313 'Cold-shock' DNA-binding domain Tmath_1537 PF02146 Sir2 family Tmath_1538 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_1540 PF01106 NifU-like domain Tmath_1541 PF13185 GAF domain Tmath_1543 PF01790 Tmath_1543 Tmath_1546 PF13529 Peptidase_C39 like family Tmath_1549 PF01546 Peptidase family M20/M25/M40 Tmath_1549 PF07687 Peptidase dimerisation domain Tmath_1550 PF01238 Phosphomannose isomerase type I Tmath_1551 PF01048 Phosphorylase superfamily Tmath_1552 PF01784 NIF3 (NGG1p interacting factor 3) Tmath_1553 PF04816 Family of unknown function (DUF633) Tmath_1554 PF00140 Sigma-70 factor, region 1 Tmath_1554 PF03979 Sigma-70 factor, region 1 Tmath_1554 PF04539 Sigma-70 region 3 Tmath_1554 PF04542 Sigma-70 region 2 Tmath_1554 PF04545 Sigma-70, region 4 Tmath_1555 PF01807 CHC2 zinc finger Tmath_1555 PF08275 DNA primase catalytic core, N-terminal domain Tmath_1555 PF10410 DnaB-helicase binding domain of primase Tmath_1555 PF13155 Toprim-like Tmath_1556 PF01966 HD domain Tmath_1556 PF13286 Phosphohydrolase-associated domain Tmath_1557 PF03840 Preprotein translocase SecG subunit Tmath_1558 PF00113 Enolase, C-terminal TIM barrel domain Tmath_1558 PF03952 Enolase, N-terminal domain Tmath_1559 PF01676 Metalloenzyme superfamily Tmath_1559 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Tmath_1560 PF00121 Triosephosphate isomerase Tmath_1561 PF00162 Phosphoglycerate kinase Tmath_1562 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tmath_1562 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tmath_1563 PF04198 Putative sugar-binding domain Tmath_1564 PF00309 Tmath_1564 Tmath_1564 PF04552 Sigma-54, DNA binding domain Tmath_1564 PF04963 Sigma-54 factor, core binding domain Tmath_1565 PF00708 Acylphosphatase Tmath_1566 PF08282 haloacid dehalogenase-like hydrolase Tmath_1567 PF01475 Ferric uptake regulator family Tmath_1568 PF04294 Tmath_1568 Tmath_1568 PF07501 G5 domain Tmath_1568 PF12229 Putative peptidoglycan binding domain Tmath_1569 PF00633 Helix-hairpin-helix motif Tmath_1569 PF00730 HhH-GPD superfamily base excision DNA repair protein Tmath_1569 PF10576 Iron-sulfur binding domain of endonuclease III Tmath_1570 PF00514 Armadillo/beta-catenin-like repeat Tmath_1570 PF08331 Tmath_1570 Tmath_1570 PF13484 Tmath_1570 Tmath_1571 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_1572 PF13370 4Fe-4S single cluster domain Tmath_1573 PF01325 Iron dependent repressor, N-terminal DNA binding domain Tmath_1574 PF04055 Radical SAM superfamily Tmath_1574 PF13186 Iron-sulfur cluster-binding domain Tmath_1574 PF13353 4Fe-4S single cluster domain Tmath_1575 PF00485 Phosphoribulokinase / Uridine kinase family Tmath_1576 PF04055 Radical SAM superfamily Tmath_1576 PF13353 4Fe-4S single cluster domain Tmath_1577 PF00849 RNA pseudouridylate synthase Tmath_1578 PF00293 NUDIX domain Tmath_1581 PF05496 Holliday junction DNA helicase ruvB N-terminus Tmath_1581 PF12002 MgsA AAA+ ATPase C terminal Tmath_1581 PF16193 Tmath_1581 Tmath_1582 PF02660 Tmath_1582 Tmath_1583 PF01734 Patatin-like phospholipase Tmath_1585 PF12146 Putative lysophospholipase Tmath_1586 PF05958 tRNA (Uracil-5-)-methyltransferase Tmath_1587 PF11007 Tmath_1587 Tmath_1588 PF12652 Tmath_1588 Tmath_1589 PF05067 Manganese containing catalase Tmath_1590 PF04073 Aminoacyl-tRNA editing domain Tmath_1591 PF00809 Pterin binding enzyme Tmath_1591 PF02310 B12 binding domain Tmath_1591 PF02574 Homocysteine S-methyltransferase Tmath_1591 PF02607 B12 binding domain Tmath_1592 PF02219 Methylenetetrahydrofolate reductase Tmath_1593 PF00343 Carbohydrate phosphorylase Tmath_1594 PF00342 Phosphoglucose isomerase Tmath_1595 PF00881 Nitroreductase family Tmath_1597 PF00586 AIR synthase related protein, N-terminal domain Tmath_1597 PF02769 AIR synthase related protein, C-terminal domain Tmath_1598 PF01924 Hydrogenase formation hypA family Tmath_1599 PF01455 HupF/HypC family Tmath_1600 PF00708 Acylphosphatase Tmath_1600 PF01300 Telomere recombination Tmath_1600 PF07503 HypF finger Tmath_1601 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tmath_1602 PF01155 Hydrogenase expression/synthesis hypA family Tmath_1603 PF12838 4Fe-4S dicluster domain Tmath_1604 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Tmath_1604 PF00374 Nickel-dependent hydrogenase Tmath_1605 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Tmath_1606 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tmath_1607 PF00146 NADH dehydrogenase Tmath_1608 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Tmath_1608 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tmath_1609 PF08902 Tmath_1609 Tmath_1610 PF00682 HMGL-like Tmath_1610 PF08502 LeuA allosteric (dimerisation) domain Tmath_1611 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Tmath_1612 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1613 PF00005 ABC transporter Tmath_1613 PF00571 CBS domain Tmath_1614 PF00392 Bacterial regulatory proteins, gntR family Tmath_1614 PF02080 TrkA-C domain Tmath_1615 PF01554 MatE Tmath_1616 PF03547 Tmath_1616 Tmath_1617 PF01938 TRAM domain Tmath_1617 PF05958 tRNA (Uracil-5-)-methyltransferase Tmath_1618 PF03061 Thioesterase superfamily Tmath_1619 PF00224 Pyruvate kinase, barrel domain Tmath_1619 PF00391 PEP-utilising enzyme, mobile domain Tmath_1619 PF02887 Pyruvate kinase, alpha/beta domain Tmath_1620 PF00365 Phosphofructokinase Tmath_1622 PF01336 OB-fold nucleic acid binding domain Tmath_1622 PF02811 PHP domain Tmath_1622 PF07733 Bacterial DNA polymerase III alpha subunit Tmath_1622 PF14579 Helix-hairpin-helix motif Tmath_1623 PF00571 CBS domain Tmath_1623 PF07085 DRTGG domain Tmath_1624 PF00381 PTS HPr component phosphorylation site Tmath_1625 PF02650 WhiA C-terminal HTH domain Tmath_1625 PF10298 WhiA N-terminal LAGLIDADG-like domain Tmath_1625 PF14527 WhiA LAGLIDADG-like domain Tmath_1627 PF00128 Alpha amylase, catalytic domain Tmath_1627 PF02903 Alpha amylase, N-terminal ig-like domain Tmath_1628 PF13413 Helix-turn-helix domain Tmath_1628 PF13464 Tmath_1628 Tmath_1630 PF09989 Tmath_1630 Tmath_1631 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1632 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1633 PF13416 Bacterial extracellular solute-binding protein Tmath_1634 PF00128 Alpha amylase, catalytic domain Tmath_1634 PF02806 Alpha amylase, C-terminal all-beta domain Tmath_1635 PF01933 Uncharacterised protein family UPF0052 Tmath_1636 PF03668 Tmath_1636 Tmath_1637 PF02811 PHP domain Tmath_1638 PF01565 FAD binding domain Tmath_1638 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tmath_1640 PF14034 Tmath_1640 Tmath_1642 PF00857 Isochorismatase family Tmath_1643 PF00122 E1-E2 ATPase Tmath_1643 PF00403 Heavy-metal-associated domain Tmath_1643 PF00702 haloacid dehalogenase-like hydrolase Tmath_1644 PF03054 tRNA methyl transferase Tmath_1646 PF07561 Tmath_1646 Tmath_1647 PF00403 Heavy-metal-associated domain Tmath_1648 PF09335 Tmath_1648 Tmath_1649 PF02001 Tmath_1649 Tmath_1650 PF04055 Radical SAM superfamily Tmath_1650 PF13353 4Fe-4S single cluster domain Tmath_1651 PF03477 ATP cone domain Tmath_1651 PF13597 Anaerobic ribonucleoside-triphosphate reductase Tmath_1652 PF12679 Tmath_1652 Tmath_1653 PF00005 ABC transporter Tmath_1654 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase Tmath_1655 PF01980 Uncharacterised protein family UPF0066 Tmath_1656 PF00005 ABC transporter Tmath_1657 PF01032 FecCD transport family Tmath_1658 PF01497 Periplasmic binding protein Tmath_1659 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tmath_1659 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1660 PF04055 Radical SAM superfamily Tmath_1661 PF00753 Metallo-beta-lactamase superfamily Tmath_1662 PF02579 Dinitrogenase iron-molybdenum cofactor Tmath_1663 PF00037 4Fe-4S binding domain Tmath_1663 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_1664 PF00037 4Fe-4S binding domain Tmath_1664 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tmath_1665 PF02579 Dinitrogenase iron-molybdenum cofactor Tmath_1666 PF17253 Tmath_1666 Tmath_1670 PF01861 Protein of unknown function DUF43 Tmath_1671 PF00356 Bacterial regulatory proteins, lacI family Tmath_1671 PF13377 Periplasmic binding protein-like domain Tmath_1672 PF00294 pfkB family carbohydrate kinase Tmath_1673 PF00251 Glycosyl hydrolases family 32 N-terminal domain Tmath_1673 PF08244 Glycosyl hydrolases family 32 C terminal Tmath_1674 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1675 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1676 PF13416 Bacterial extracellular solute-binding protein Tmath_1678 PF01909 Nucleotidyltransferase domain Tmath_1679 PF08780 Nucleotidyltransferase substrate binding protein like Tmath_1680 PF00905 Penicillin binding protein transpeptidase domain Tmath_1680 PF03717 Penicillin-binding Protein dimerisation domain Tmath_1681 PF13416 Bacterial extracellular solute-binding protein Tmath_1682 PF00923 Transaldolase Tmath_1683 PF13685 Iron-containing alcohol dehydrogenase Tmath_1684 PF00392 Bacterial regulatory proteins, gntR family Tmath_1684 PF13377 Periplasmic binding protein-like domain Tmath_1685 PF00596 Class II Aldolase and Adducin N-terminal domain Tmath_1686 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_1686 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_1687 PF02610 L-arabinose isomerase Tmath_1687 PF11762 L-arabinose isomerase C-terminal domain Tmath_1689 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) Tmath_1690 PF06964 Alpha-L-arabinofuranosidase C-terminus Tmath_1691 PF06964 Alpha-L-arabinofuranosidase C-terminus Tmath_1692 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1693 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1694 PF01547 Bacterial extracellular solute-binding protein Tmath_1695 PF00395 S-layer homology domain Tmath_1695 PF04616 Glycosyl hydrolases family 43 Tmath_1695 PF13385 Concanavalin A-like lectin/glucanases superfamily Tmath_1695 PF16369 Tmath_1695 Tmath_1696 PF01263 Aldose 1-epimerase Tmath_1697 PF05673 Protein of unknown function (DUF815) Tmath_1698 PF03069 Acetamidase/Formamidase family Tmath_1699 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1700 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1701 PF01547 Bacterial extracellular solute-binding protein Tmath_1702 PF01074 Glycosyl hydrolases family 38 N-terminal domain Tmath_1702 PF07748 Glycosyl hydrolases family 38 C-terminal domain Tmath_1702 PF09261 Alpha mannosidase, middle domain Tmath_1703 PF02311 AraC-like ligand binding domain Tmath_1703 PF12833 Helix-turn-helix domain Tmath_1704 PF00703 Glycosyl hydrolases family 2 Tmath_1704 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Tmath_1704 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tmath_1705 PF02065 Melibiase Tmath_1705 PF16874 Tmath_1705 Tmath_1705 PF16875 Tmath_1705 Tmath_1706 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1707 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1708 PF13416 Bacterial extracellular solute-binding protein Tmath_1710 PF00480 ROK family Tmath_1710 PF13412 Winged helix-turn-helix DNA-binding Tmath_1711 PF16363 Tmath_1711 Tmath_1712 PF00288 GHMP kinases N terminal domain Tmath_1712 PF08544 GHMP kinases C terminal Tmath_1712 PF10509 Galactokinase galactose-binding signature Tmath_1713 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tmath_1713 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tmath_1714 PF05685 Putative restriction endonuclease Tmath_1715 PF01055 Glycosyl hydrolases family 31 Tmath_1715 PF13802 Galactose mutarotase-like Tmath_1715 PF17137 Tmath_1715 Tmath_1716 PF06808 Tmath_1716 Tmath_1717 PF04290 Tmath_1717 Tmath_1718 PF03480 Bacterial extracellular solute-binding protein, family 7 Tmath_1721 PF02614 Glucuronate isomerase Tmath_1722 PF01232 Mannitol dehydrogenase Rossmann domain Tmath_1722 PF08125 Mannitol dehydrogenase C-terminal domain Tmath_1723 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tmath_1723 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tmath_1724 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_1724 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_1725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_1725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_1726 PF16257 Tmath_1726 Tmath_1727 PF00455 Tmath_1727 Tmath_1727 PF08220 DeoR-like helix-turn-helix domain Tmath_1728 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_1728 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_1729 PF01261 Xylose isomerase-like TIM barrel Tmath_1729 PF07582 AP endonuclease family 2 C terminus Tmath_1730 PF01261 Xylose isomerase-like TIM barrel Tmath_1731 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_1731 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_1732 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_1732 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_1733 PF00356 Bacterial regulatory proteins, lacI family Tmath_1733 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Tmath_1736 PF04055 Radical SAM superfamily Tmath_1736 PF13353 4Fe-4S single cluster domain Tmath_1739 PF01871 AMMECR1 Tmath_1739 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Tmath_1740 PF04854 Tmath_1740 Tmath_1741 PF00501 AMP-binding enzyme Tmath_1741 PF13193 AMP-binding enzyme C-terminal domain Tmath_1742 PF00480 ROK family Tmath_1743 PF02811 PHP domain Tmath_1744 PF02603 HPr Serine kinase N terminus Tmath_1744 PF07475 HPr Serine kinase C-terminal domain Tmath_1745 PF02237 Biotin protein ligase C terminal domain Tmath_1745 PF03099 Biotin/lipoate A/B protein ligase family Tmath_1745 PF08279 HTH domain Tmath_1747 PF01541 GIY-YIG catalytic domain Tmath_1747 PF02151 UvrB/uvrC motif Tmath_1747 PF08459 UvrC Helix-hairpin-helix N-terminal Tmath_1747 PF14520 Helix-hairpin-helix domain Tmath_1748 PF00905 Penicillin binding protein transpeptidase domain Tmath_1749 PF01098 Tmath_1749 Tmath_1750 PF00498 FHA domain Tmath_1751 PF00005 ABC transporter Tmath_1752 PF00271 Helicase conserved C-terminal domain Tmath_1752 PF02151 UvrB/uvrC motif Tmath_1752 PF04851 Type III restriction enzyme, res subunit Tmath_1752 PF12344 Ultra-violet resistance protein B Tmath_1753 PF04029 2-phosphosulpholactate phosphatase Tmath_1754 PF13180 PDZ domain Tmath_1755 PF03572 Peptidase family S41 Tmath_1755 PF13180 PDZ domain Tmath_1756 PF01551 Peptidase family M23 Tmath_1757 PF02687 Tmath_1757 Tmath_1758 PF00005 ABC transporter Tmath_1759 PF13556 PucR C-terminal helix-turn-helix domain Tmath_1760 PF00005 ABC transporter Tmath_1760 PF03459 TOBE domain Tmath_1763 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tmath_1763 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tmath_1764 PF01386 Ribosomal L25p family Tmath_1764 PF14693 Ribosomal protein TL5, C-terminal domain Tmath_1765 PF13419 Haloacid dehalogenase-like hydrolase Tmath_1769 PF14450 Cell division protein FtsA Tmath_1770 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tmath_1771 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1771 PF01434 Peptidase family M41 Tmath_1772 PF07314 Tmath_1772 Tmath_1774 PF03610 PTS system fructose IIA component Tmath_1775 PF02734 DAK2 domain Tmath_1776 PF02733 Dak1 domain Tmath_1777 PF00158 Sigma-54 interaction domain Tmath_1777 PF00381 PTS HPr component phosphorylation site Tmath_1777 PF00989 PAS fold Tmath_1778 PF07892 Protein of unknown function (DUF1667) Tmath_1779 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1780 PF01266 FAD dependent oxidoreductase Tmath_1780 PF04324 BFD-like [2Fe-2S] binding domain Tmath_1781 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tmath_1781 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tmath_1782 PF00230 Major intrinsic protein Tmath_1783 PF04309 Glycerol-3-phosphate responsive antiterminator Tmath_1784 PF01522 Polysaccharide deacetylase Tmath_1785 PF01930 Domain of unknown function DUF83 Tmath_1787 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_1787 PF00483 Nucleotidyl transferase Tmath_1787 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tmath_1788 PF02690 Tmath_1788 Tmath_1789 PF01244 Membrane dipeptidase (Peptidase family M19) Tmath_1791 PF00464 Serine hydroxymethyltransferase Tmath_1792 PF01502 Phosphoribosyl-AMP cyclohydrolase Tmath_1792 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tmath_1793 PF00977 Histidine biosynthesis protein Tmath_1794 PF00977 Histidine biosynthesis protein Tmath_1795 PF00117 Glutamine amidotransferase class-I Tmath_1796 PF00475 Imidazoleglycerol-phosphate dehydratase Tmath_1797 PF00155 Aminotransferase class I and II Tmath_1798 PF00815 Histidinol dehydrogenase Tmath_1799 PF01634 ATP phosphoribosyltransferase Tmath_1800 PF13393 Histidyl-tRNA synthetase Tmath_1801 PF05685 Putative restriction endonuclease Tmath_1802 PF01909 Nucleotidyltransferase domain Tmath_1803 PF14238 Tmath_1803 Tmath_1804 PF09822 Tmath_1804 Tmath_1805 PF01061 Tmath_1805 Tmath_1806 PF00005 ABC transporter Tmath_1807 PF06165 Glycosyltransferase family 36 Tmath_1807 PF10091 Putative glucoamylase Tmath_1807 PF11329 Tmath_1807 Tmath_1807 PF17167 Tmath_1807 Tmath_1808 PF01189 NOL1/NOP2/sun family Tmath_1808 PF13636 pre-rRNA processing and ribosome biogenesis Tmath_1808 PF17125 Tmath_1808 Tmath_1808 PF17126 Tmath_1808 Tmath_1809 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tmath_1809 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tmath_1810 PF00561 alpha/beta hydrolase fold Tmath_1811 PF01053 Cys/Met metabolism PLP-dependent enzyme Tmath_1812 PF00742 Homoserine dehydrogenase Tmath_1812 PF03447 Homoserine dehydrogenase, NAD binding domain Tmath_1813 PF01546 Peptidase family M20/M25/M40 Tmath_1813 PF07687 Peptidase dimerisation domain Tmath_1814 PF00072 Response regulator receiver domain Tmath_1815 PF00072 Response regulator receiver domain Tmath_1815 PF08668 HDOD domain Tmath_1816 PF00211 Adenylate and Guanylate cyclase catalytic domain Tmath_1816 PF13181 Tetratricopeptide repeat Tmath_1816 PF13191 AAA ATPase domain Tmath_1816 PF13374 Tetratricopeptide repeat Tmath_1816 PF13424 Tetratricopeptide repeat Tmath_1818 PF11750 Tmath_1818 Tmath_1819 PF00512 His Kinase A (phospho-acceptor) domain Tmath_1819 PF00989 PAS fold Tmath_1819 PF01590 GAF domain Tmath_1819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_1820 PF01964 ThiC family Tmath_1821 PF09918 Tmath_1821 Tmath_1822 PF02779 Transketolase, pyrimidine binding domain Tmath_1822 PF02780 Transketolase, C-terminal domain Tmath_1823 PF00456 Transketolase, thiamine diphosphate binding domain Tmath_1824 PF02588 Tmath_1824 Tmath_1824 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tmath_1825 PF03808 Tmath_1825 Tmath_1826 PF04230 Tmath_1826 Tmath_1829 PF02452 PemK-like protein Tmath_1830 PF01402 Ribbon-helix-helix protein, copG family Tmath_1831 PF00842 Alanine racemase, C-terminal domain Tmath_1831 PF01168 Alanine racemase, N-terminal domain Tmath_1833 PF01256 Carbohydrate kinase Tmath_1833 PF03853 YjeF-related protein N-terminus Tmath_1834 PF01648 4'-phosphopantetheinyl transferase superfamily Tmath_1836 PF01381 Helix-turn-helix Tmath_1837 PF01381 Helix-turn-helix Tmath_1838 PF03063 Prismane/CO dehydrogenase family Tmath_1839 PF04456 Protein of unknown function (DUF503) Tmath_1840 PF02659 Tmath_1840 Tmath_1841 PF01471 Putative peptidoglycan binding domain Tmath_1841 PF01476 LysM domain Tmath_1841 PF13354 Beta-lactamase enzyme family Tmath_1842 PF02735 Ku70/Ku80 beta-barrel domain Tmath_1843 PF01068 ATP dependent DNA ligase domain Tmath_1843 PF04679 ATP dependent DNA ligase C terminal region Tmath_1844 PF01894 Uncharacterised protein family UPF0047 Tmath_1846 PF02452 PemK-like protein Tmath_1855 PF13401 AAA domain Tmath_1856 PF00665 Integrase core domain Tmath_1856 PF09299 Mu transposase, C-terminal Tmath_1860 PF13175 AAA ATPase domain Tmath_1861 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Tmath_1861 PF04851 Type III restriction enzyme, res subunit Tmath_1861 PF11867 Tmath_1861 Tmath_1862 PF03235 Tmath_1862 Tmath_1863 PF01420 Type I restriction modification DNA specificity domain Tmath_1864 PF02384 N-6 DNA Methylase Tmath_1864 PF12161 HsdM N-terminal domain Tmath_1866 PF05635 23S rRNA-intervening sequence protein Tmath_1867 PF01380 SIS domain Tmath_1867 PF13522 Glutamine amidotransferase domain Tmath_1868 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tmath_1868 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tmath_1868 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tmath_1868 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tmath_1869 PF01553 Acyltransferase Tmath_1871 PF01515 Phosphate acetyl/butaryl transferase Tmath_1873 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tmath_1874 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_1875 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tmath_1875 PF17147 Tmath_1875 Tmath_1876 PF12838 4Fe-4S dicluster domain Tmath_1878 PF00871 Acetokinase family Tmath_1879 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tmath_1879 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tmath_1880 PF01515 Phosphate acetyl/butaryl transferase Tmath_1881 PF00871 Acetokinase family Tmath_1882 PF07949 YbbR-like protein Tmath_1883 PF02457 DisA bacterial checkpoint controller nucleotide-binding Tmath_1884 PF04972 BON domain Tmath_1885 PF00582 Universal stress protein family Tmath_1887 PF13419 Haloacid dehalogenase-like hydrolase Tmath_1888 PF01520 N-acetylmuramoyl-L-alanine amidase Tmath_1889 PF01471 Putative peptidoglycan binding domain Tmath_1889 PF01476 LysM domain Tmath_1890 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_1891 PF07875 Tmath_1891 Tmath_1892 PF07875 Tmath_1892 Tmath_1893 PF03819 MazG nucleotide pyrophosphohydrolase domain Tmath_1894 PF02511 Thymidylate synthase complementing protein Tmath_1895 PF03471 Transporter associated domain Tmath_1896 PF02554 Tmath_1896 Tmath_1896 PF13722 Tmath_1896 Tmath_1898 PF00380 Ribosomal protein S9/S16 Tmath_1899 PF00572 Ribosomal protein L13 Tmath_1900 PF01416 tRNA pseudouridine synthase Tmath_1901 PF02361 Cobalt transport protein Tmath_1902 PF00005 ABC transporter Tmath_1903 PF00005 ABC transporter Tmath_1904 PF01196 Ribosomal protein L17 Tmath_1905 PF01000 RNA polymerase Rpb3/RpoA insert domain Tmath_1905 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tmath_1905 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tmath_1906 PF00163 Ribosomal protein S4/S9 N-terminal domain Tmath_1906 PF01479 S4 domain Tmath_1907 PF00411 Ribosomal protein S11 Tmath_1908 PF00416 Ribosomal protein S13/S18 Tmath_1909 PF00444 Ribosomal protein L36 Tmath_1910 PF01176 Translation initiation factor 1A / IF-1 Tmath_1912 PF00557 Metallopeptidase family M24 Tmath_1913 PF00406 Adenylate kinase Tmath_1913 PF05191 Adenylate kinase, active site lid Tmath_1914 PF00344 SecY translocase Tmath_1915 PF00828 Ribosomal protein L18e/L15 Tmath_1916 PF00333 Ribosomal protein S5, N-terminal domain Tmath_1916 PF03719 Ribosomal protein S5, C-terminal domain Tmath_1917 PF00861 Ribosomal L18p/L5e family Tmath_1918 PF00347 Ribosomal protein L6 Tmath_1919 PF00410 Ribosomal protein S8 Tmath_1920 PF00253 Ribosomal protein S14p/S29e Tmath_1921 PF00281 Ribosomal protein L5 Tmath_1921 PF00673 ribosomal L5P family C-terminus Tmath_1922 PF00467 KOW motif Tmath_1922 PF17136 Tmath_1922 Tmath_1923 PF00238 Ribosomal protein L14p/L23e Tmath_1924 PF00366 Ribosomal protein S17 Tmath_1925 PF00831 Ribosomal L29 protein Tmath_1926 PF00252 Ribosomal protein L16p/L10e Tmath_1927 PF00189 Ribosomal protein S3, C-terminal domain Tmath_1927 PF07650 KH domain Tmath_1928 PF00237 Ribosomal protein L22p/L17e Tmath_1929 PF00203 Ribosomal protein S19 Tmath_1930 PF00181 Ribosomal Proteins L2, RNA binding domain Tmath_1930 PF03947 Ribosomal Proteins L2, C-terminal domain Tmath_1931 PF00276 Ribosomal protein L23 Tmath_1932 PF00573 Ribosomal protein L4/L1 family Tmath_1933 PF00297 Ribosomal protein L3 Tmath_1934 PF00338 Ribosomal protein S10p/S20e Tmath_1935 PF00009 Elongation factor Tu GTP binding domain Tmath_1935 PF03143 Elongation factor Tu C-terminal domain Tmath_1935 PF03144 Elongation factor Tu domain 2 Tmath_1936 PF04542 Sigma-70 region 2 Tmath_1936 PF08281 Sigma-70, region 4 Tmath_1937 PF05991 Tmath_1937 Tmath_1938 PF00588 SpoU rRNA Methylase family Tmath_1938 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tmath_1939 PF00636 Ribonuclease III domain Tmath_1940 PF01406 tRNA synthetases class I (C) catalytic domain Tmath_1940 PF09190 DALR domain Tmath_1941 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_1941 PF06426 Serine acetyltransferase, N-terminal Tmath_1942 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tmath_1944 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tmath_1944 PF03129 Anticodon binding domain Tmath_1944 PF04073 Aminoacyl-tRNA editing domain Tmath_1945 PF02542 YgbB family Tmath_1946 PF02450 Lecithin:cholesterol acyltransferase Tmath_1947 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tmath_1948 PF01938 TRAM domain Tmath_1948 PF13638 PIN domain Tmath_1950 PF13481 AAA domain Tmath_1950 PF13541 Subunit ChlI of Mg-chelatase Tmath_1951 PF01566 Tmath_1951 Tmath_1952 PF00128 Alpha amylase, catalytic domain Tmath_1952 PF00686 Starch binding domain Tmath_1953 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1954 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_1955 PF13416 Bacterial extracellular solute-binding protein Tmath_1956 PF01325 Iron dependent repressor, N-terminal DNA binding domain Tmath_1956 PF02742 Iron dependent repressor, metal binding and dimerisation domain Tmath_1957 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_1957 PF02151 UvrB/uvrC motif Tmath_1957 PF02861 Clp amino terminal domain Tmath_1957 PF07724 AAA domain (Cdc48 subfamily) Tmath_1957 PF10431 C-terminal, D2-small domain, of ClpB protein Tmath_1958 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Tmath_1959 PF02151 UvrB/uvrC motif Tmath_1960 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) Tmath_1962 PF00390 Malic enzyme, N-terminal domain Tmath_1962 PF03949 Malic enzyme, NAD binding domain Tmath_1963 PF00009 Elongation factor Tu GTP binding domain Tmath_1963 PF00679 Elongation factor G C-terminus Tmath_1963 PF03764 Elongation factor G, domain IV Tmath_1963 PF14492 Elongation Factor G, domain II Tmath_1964 PF00391 PEP-utilising enzyme, mobile domain Tmath_1964 PF02896 PEP-utilising enzyme, TIM barrel domain Tmath_1964 PF05524 PEP-utilising enzyme, N-terminal Tmath_1965 PF00990 GGDEF domain Tmath_1965 PF01590 GAF domain Tmath_1966 PF00317 Ribonucleotide reductase, all-alpha domain Tmath_1966 PF02867 Ribonucleotide reductase, barrel domain Tmath_1966 PF12637 Tmath_1966 Tmath_1967 PF14595 Thioredoxin Tmath_1968 PF00202 Aminotransferase class-III Tmath_1969 PF05979 Bacterial protein of unknown function (DUF896) Tmath_1970 PF07758 Tmath_1970 Tmath_1971 PF00326 Prolyl oligopeptidase family Tmath_1973 PF00005 ABC transporter Tmath_1973 PF00664 ABC transporter transmembrane region Tmath_1974 PF01061 Tmath_1974 Tmath_1975 PF00005 ABC transporter Tmath_1976 PF04055 Radical SAM superfamily Tmath_1976 PF13353 4Fe-4S single cluster domain Tmath_1980 PF01381 Helix-turn-helix Tmath_1981 PF07690 Major Facilitator Superfamily Tmath_1982 PF04055 Radical SAM superfamily Tmath_1982 PF13186 Iron-sulfur cluster-binding domain Tmath_1982 PF13353 4Fe-4S single cluster domain Tmath_1986 PF01381 Helix-turn-helix Tmath_1987 PF01909 Nucleotidyltransferase domain Tmath_1988 PF01934 Protein of unknown function DUF86 Tmath_1992 PF03749 Sugar fermentation stimulation protein Tmath_1993 PF01242 6-pyruvoyl tetrahydropterin synthase Tmath_1994 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tmath_1995 PF00809 Pterin binding enzyme Tmath_1996 PF01227 GTP cyclohydrolase I Tmath_1997 PF00152 tRNA synthetases class II (D, K and N) Tmath_1997 PF01336 OB-fold nucleic acid binding domain Tmath_1998 PF01272 Transcription elongation factor, GreA/GreB, C-term Tmath_1998 PF03449 Transcription elongation factor, N-terminal Tmath_1999 PF01488 Shikimate / quinate 5-dehydrogenase Tmath_2003 PF05504 Spore germination B3/ GerAC like, C-terminal Tmath_2004 PF03323 Tmath_2004 Tmath_2005 PF03845 Tmath_2005 Tmath_2006 PF03309 Type III pantothenate kinase Tmath_2007 PF12822 Protein of unknown function (DUF3816) Tmath_2008 PF00364 Biotin-requiring enzyme Tmath_2009 PF04277 Tmath_2009 Tmath_2010 PF01039 Carboxyl transferase domain Tmath_2012 PF01268 Formate--tetrahydrofolate ligase Tmath_2013 PF00512 His Kinase A (phospho-acceptor) domain Tmath_2013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_2013 PF13188 PAS domain Tmath_2013 PF13426 PAS domain Tmath_2014 PF00004 ATPase family associated with various cellular activities (AAA) Tmath_2014 PF01434 Peptidase family M41 Tmath_2014 PF06480 FtsH Extracellular Tmath_2015 PF00156 Phosphoribosyl transferase domain Tmath_2016 PF01171 PP-loop family Tmath_2016 PF11734 TilS substrate C-terminal domain Tmath_2017 PF07228 Stage II sporulation protein E (SpoIIE) Tmath_2018 PF08241 Methyltransferase domain Tmath_2019 PF00892 EamA-like transporter family Tmath_2021 PF06935 Tmath_2021 Tmath_2022 PF12655 Tmath_2022 Tmath_2023 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tmath_2023 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tmath_2023 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tmath_2023 PF10371 Domain of unknown function Tmath_2023 PF12838 4Fe-4S dicluster domain Tmath_2023 PF17147 Tmath_2023 Tmath_2024 PF16260 Tmath_2024 Tmath_2025 PF09682 Tmath_2025 Tmath_2026 PF01520 N-acetylmuramoyl-L-alanine amidase Tmath_2027 PF00563 EAL domain Tmath_2027 PF00989 PAS fold Tmath_2027 PF00990 GGDEF domain Tmath_2027 PF08447 PAS fold Tmath_2028 PF00266 Aminotransferase class-V Tmath_2031 PF00403 Heavy-metal-associated domain Tmath_2032 PF00122 E1-E2 ATPase Tmath_2032 PF00702 haloacid dehalogenase-like hydrolase Tmath_2033 PF01022 Bacterial regulatory protein, arsR family Tmath_2036 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_2038 PF01909 Nucleotidyltransferase domain Tmath_2039 PF10387 Protein of unknown function (DUF2442) Tmath_2041 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Tmath_2043 PF00801 PKD domain Tmath_2044 PF07833 Copper amine oxidase N-terminal domain Tmath_2045 PF15731 Tmath_2045 Tmath_2049 PF02541 Ppx/GppA phosphatase family Tmath_2050 PF00575 S1 RNA binding domain Tmath_2051 PF04977 Septum formation initiator Tmath_2052 PF09578 Tmath_2052 Tmath_2053 PF00571 CBS domain Tmath_2053 PF01368 DHH family Tmath_2053 PF02833 DHHA2 domain Tmath_2053 PF07085 DRTGG domain Tmath_2054 PF06888 Putative Phosphatase Tmath_2055 PF01547 Bacterial extracellular solute-binding protein Tmath_2056 PF07873 YabP family Tmath_2057 PF08486 Tmath_2057 Tmath_2058 PF01479 S4 domain Tmath_2059 PF00216 Bacterial DNA-binding protein Tmath_2060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tmath_2060 PF03819 MazG nucleotide pyrophosphohydrolase domain Tmath_2061 PF13181 Tetratricopeptide repeat Tmath_2061 PF13424 Tetratricopeptide repeat Tmath_2062 PF05977 Transmembrane secretion effector Tmath_2063 PF01926 50S ribosome-binding GTPase Tmath_2064 PF00206 Lyase Tmath_2064 PF10415 Fumarase C C-terminus Tmath_2065 PF01880 Desulfoferrodoxin Tmath_2065 PF06397 Desulfoferrodoxin, N-terminal domain Tmath_2066 PF04205 FMN-binding domain Tmath_2067 PF01040 UbiA prenyltransferase family Tmath_2068 PF02424 ApbE family Tmath_2069 PF00348 Polyprenyl synthetase Tmath_2070 PF07456 Tmath_2070 Tmath_2071 PF07009 Protein of unknown function (DUF1312) Tmath_2072 PF04173 Tmath_2072 Tmath_2072 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_2073 PF00300 Histidine phosphatase superfamily (branch 1) Tmath_2074 PF00654 Voltage gated chloride channel Tmath_2074 PF02080 TrkA-C domain Tmath_2075 PF00122 E1-E2 ATPase Tmath_2075 PF00689 Cation transporting ATPase, C-terminus Tmath_2075 PF00690 Cation transporter/ATPase, N-terminus Tmath_2075 PF00702 haloacid dehalogenase-like hydrolase Tmath_2077 PF13346 Tmath_2077 Tmath_2078 PF00005 ABC transporter Tmath_2079 PF00392 Bacterial regulatory proteins, gntR family Tmath_2080 PF09957 Tmath_2080 Tmath_2081 PF01850 PIN domain Tmath_2083 PF00206 Lyase Tmath_2083 PF14698 Argininosuccinate lyase C-terminal Tmath_2084 PF00764 Arginosuccinate synthase Tmath_2085 PF02142 MGS-like domain Tmath_2085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tmath_2085 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tmath_2086 PF00117 Glutamine amidotransferase class-I Tmath_2086 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tmath_2087 PF00202 Aminotransferase class-III Tmath_2088 PF00696 Amino acid kinase family Tmath_2089 PF01960 ArgJ family Tmath_2090 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tmath_2090 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tmath_2091 PF07228 Stage II sporulation protein E (SpoIIE) Tmath_2092 PF00037 4Fe-4S binding domain Tmath_2092 PF00989 PAS fold Tmath_2092 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tmath_2092 PF04060 Putative Fe-S cluster Tmath_2093 PF00465 Iron-containing alcohol dehydrogenase Tmath_2094 PF00107 Zinc-binding dehydrogenase Tmath_2094 PF08240 Alcohol dehydrogenase GroES-like domain Tmath_2095 PF00175 Oxidoreductase NAD-binding domain Tmath_2095 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tmath_2096 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tmath_2096 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tmath_2097 PF02811 PHP domain Tmath_2097 PF14520 Helix-hairpin-helix domain Tmath_2097 PF14716 Helix-hairpin-helix domain Tmath_2097 PF14791 DNA polymerase beta thumb Tmath_2103 PF00122 E1-E2 ATPase Tmath_2103 PF00690 Cation transporter/ATPase, N-terminus Tmath_2103 PF00702 haloacid dehalogenase-like hydrolase Tmath_2104 PF01569 PAP2 superfamily Tmath_2105 PF09515 Thiamine transporter protein (Thia_YuaJ) Tmath_2106 PF00005 ABC transporter Tmath_2106 PF00664 ABC transporter transmembrane region Tmath_2107 PF00005 ABC transporter Tmath_2107 PF00664 ABC transporter transmembrane region Tmath_2108 PF01047 MarR family Tmath_2109 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tmath_2110 PF00171 Aldehyde dehydrogenase family Tmath_2110 PF00465 Iron-containing alcohol dehydrogenase Tmath_2111 PF00877 NlpC/P60 family Tmath_2111 PF12913 SH3 domain of the SH3b1 type Tmath_2112 PF00248 Aldo/keto reductase family Tmath_2112 PF13534 4Fe-4S dicluster domain Tmath_2114 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tmath_2115 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_2116 PF00528 Binding-protein-dependent transport system inner membrane component Tmath_2116 PF12911 Tmath_2116 Tmath_2117 PF00005 ABC transporter Tmath_2117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_2118 PF00005 ABC transporter Tmath_2118 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tmath_2119 PF13483 Beta-lactamase superfamily domain Tmath_2120 PF00750 tRNA synthetases class I (R) Tmath_2120 PF03485 Arginyl tRNA synthetase N terminal domain Tmath_2120 PF05746 DALR anticodon binding domain Tmath_2121 PF09148 Domain of unknown function (DUF1934) Tmath_2122 PF01820 D-ala D-ala ligase N-terminus Tmath_2122 PF07478 D-ala D-ala ligase C-terminus Tmath_2123 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tmath_2124 PF03413 Peptidase propeptide and YPEB domain Tmath_2124 PF14620 Tmath_2124 Tmath_2125 PF01471 Putative peptidoglycan binding domain Tmath_2125 PF07486 Cell Wall Hydrolase Tmath_2126 PF09551 Tmath_2126 Tmath_2127 PF05504 Spore germination B3/ GerAC like, C-terminal Tmath_2128 PF03845 Tmath_2128 Tmath_2129 PF03323 Tmath_2129 Tmath_2131 PF12804 MobA-like NTP transferase domain Tmath_2132 PF00392 Bacterial regulatory proteins, gntR family Tmath_2132 PF07729 FCD domain Tmath_2133 PF00288 GHMP kinases N terminal domain Tmath_2133 PF08544 GHMP kinases C terminal Tmath_2134 PF01476 LysM domain Tmath_2134 PF12673 Tmath_2134 Tmath_2135 PF06257 Protein of unknown function (DUF1021) Tmath_2136 PF05582 Tmath_2136 Tmath_2137 PF04014 Antidote-toxin recognition MazE Tmath_2137 PF15714 Tmath_2137 Tmath_2138 PF13616 PPIC-type PPIASE domain Tmath_2138 PF13624 SurA N-terminal domain Tmath_2139 PF00270 DEAD/DEAH box helicase Tmath_2139 PF00271 Helicase conserved C-terminal domain Tmath_2139 PF02559 CarD-like/TRCF domain Tmath_2139 PF03461 TRCF domain Tmath_2141 PF01195 Peptidyl-tRNA hydrolase Tmath_2142 PF13180 PDZ domain Tmath_2142 PF13365 Trypsin-like peptidase domain Tmath_2143 PF00512 His Kinase A (phospho-acceptor) domain Tmath_2143 PF00672 HAMP domain Tmath_2143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_2144 PF00072 Response regulator receiver domain Tmath_2144 PF00486 Transcriptional regulatory protein, C terminal Tmath_2145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tmath_2145 PF14572 Phosphoribosyl synthetase-associated domain Tmath_2146 PF00132 Bacterial transferase hexapeptide (six repeats) Tmath_2146 PF12804 MobA-like NTP transferase domain Tmath_2147 PF04026 SpoVG Tmath_2148 PF00156 Phosphoribosyl transferase domain Tmath_2148 PF09182 Bacterial purine repressor, N-terminal Tmath_2149 PF01225 Mur ligase family, catalytic domain Tmath_2149 PF02875 Mur ligase family, glutamate ligase domain Tmath_2149 PF08245 Mur ligase middle domain Tmath_2150 PF05168 HEPN domain Tmath_2152 PF01909 Nucleotidyltransferase domain Tmath_2153 PF00356 Bacterial regulatory proteins, lacI family Tmath_2153 PF13377 Periplasmic binding protein-like domain Tmath_2154 PF02517 CAAX protease self-immunity Tmath_2155 PF00011 Hsp20/alpha crystallin family Tmath_2157 PF01850 PIN domain Tmath_2158 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tmath_2158 PF02378 Phosphotransferase system, EIIC Tmath_2159 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tmath_2160 PF00294 pfkB family carbohydrate kinase Tmath_2161 PF00455 Tmath_2161 Tmath_2161 PF08220 DeoR-like helix-turn-helix domain Tmath_2162 PF00395 S-layer homology domain Tmath_2163 PF13552 Tmath_2163 Tmath_2164 PF00395 S-layer homology domain Tmath_2164 PF01522 Polysaccharide deacetylase Tmath_2165 PF07833 Copper amine oxidase N-terminal domain Tmath_2165 PF08239 Bacterial SH3 domain Tmath_2165 PF11741 AMIN domain Tmath_2166 PF13470 Tmath_2166 Tmath_2167 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Tmath_2168 PF00117 Glutamine amidotransferase class-I Tmath_2168 PF06418 CTP synthase N-terminus Tmath_2170 PF07521 RNA-metabolising metallo-beta-lactamase Tmath_2170 PF10996 Beta-Casp domain Tmath_2170 PF16661 Tmath_2170 Tmath_2172 PF10047 Tmath_2172 Tmath_2173 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tmath_2173 PF01842 ACT domain Tmath_2173 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tmath_2174 PF00266 Aminotransferase class-V Tmath_2176 PF01471 Putative peptidoglycan binding domain Tmath_2176 PF03572 Peptidase family S41 Tmath_2176 PF13180 PDZ domain Tmath_2177 PF00288 GHMP kinases N terminal domain Tmath_2177 PF08544 GHMP kinases C terminal Tmath_2178 PF00291 Pyridoxal-phosphate dependent enzyme Tmath_2179 PF00742 Homoserine dehydrogenase Tmath_2179 PF01842 ACT domain Tmath_2179 PF03447 Homoserine dehydrogenase, NAD binding domain Tmath_2181 PF13520 Amino acid permease Tmath_2182 PF00753 Metallo-beta-lactamase superfamily Tmath_2183 PF09827 CRISPR associated protein Cas2 Tmath_2184 PF01867 CRISPR associated protein Cas1 Tmath_2185 PF01930 Domain of unknown function DUF83 Tmath_2187 PF07833 Copper amine oxidase N-terminal domain Tmath_2190 PF07833 Copper amine oxidase N-terminal domain Tmath_2191 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Tmath_2196 PF00270 DEAD/DEAH box helicase Tmath_2196 PF00271 Helicase conserved C-terminal domain Tmath_2197 PF09704 CRISPR-associated protein (Cas_Cas5) Tmath_2198 PF05107 Tmath_2198 Tmath_2199 PF09484 Tmath_2199 Tmath_2200 PF01881 CRISPR associated protein Cas6 Tmath_2202 PF00704 Glycosyl hydrolases family 18 Tmath_2202 PF07833 Copper amine oxidase N-terminal domain Tmath_2203 PF01592 NifU-like N terminal domain Tmath_2204 PF00266 Aminotransferase class-V Tmath_2205 PF01458 Uncharacterized protein family (UPF0051) Tmath_2206 PF01458 Uncharacterized protein family (UPF0051) Tmath_2207 PF00005 ABC transporter Tmath_2208 PF00166 Chaperonin 10 Kd subunit Tmath_2209 PF00462 Glutaredoxin Tmath_2212 PF00579 tRNA synthetases class I (W and Y) Tmath_2212 PF01479 S4 domain Tmath_2213 PF02590 Predicted SPOUT methyltransferase Tmath_2214 PF02590 Predicted SPOUT methyltransferase Tmath_2215 PF14116 Tmath_2215 Tmath_2216 PF13180 PDZ domain Tmath_2216 PF13365 Trypsin-like peptidase domain Tmath_2217 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tmath_2218 PF09648 YycH protein Tmath_2219 PF07435 YycH protein Tmath_2221 PF00512 His Kinase A (phospho-acceptor) domain Tmath_2221 PF00672 HAMP domain Tmath_2221 PF00989 PAS fold Tmath_2221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tmath_2222 PF00072 Response regulator receiver domain Tmath_2222 PF00486 Transcriptional regulatory protein, C terminal Tmath_2223 PF13485 Peptidase MA superfamily Tmath_2224 PF01476 LysM domain Tmath_2224 PF01551 Peptidase family M23 Tmath_2224 PF07501 G5 domain Tmath_2225 PF07261 Replication initiation and membrane attachment Tmath_2226 PF01695 IstB-like ATP binding protein Tmath_2227 PF01433 Peptidase family M1 Tmath_2228 PF06245 Tmath_2228 Tmath_2229 PF00753 Metallo-beta-lactamase superfamily Tmath_2230 PF11213 Protein of unknown function (DUF3006) Tmath_2231 PF00709 Adenylosuccinate synthetase Tmath_2232 PF03486 HI0933-like protein Tmath_2233 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tmath_2233 PF00672 HAMP domain Tmath_2235 PF01432 Peptidase family M3 Tmath_2235 PF08439 Oligopeptidase F Tmath_2237 PF00209 Sodium:neurotransmitter symporter family Tmath_2239 PF02417 Tmath_2239 Tmath_2240 PF02417 Tmath_2240 Tmath_2241 PF01813 ATP synthase subunit D Tmath_2242 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_2242 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_2243 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tmath_2243 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tmath_2243 PF16886 Tmath_2243 Tmath_2244 PF01990 ATP synthase (F/14-kDa) subunit Tmath_2245 PF01992 ATP synthase (C/AC39) subunit Tmath_2246 PF01991 ATP synthase (E/31 kDa) subunit Tmath_2247 PF00137 ATP synthase subunit C Tmath_2248 PF01496 V-type ATPase 116kDa subunit family Tmath_2249 PF16999 Tmath_2249 Tmath_2250 PF00860 Permease family Tmath_2254 PF13624 SurA N-terminal domain Tmath_2258 PF00027 Cyclic nucleotide-binding domain Tmath_2258 PF13545 Crp-like helix-turn-helix domain Tmath_2259 PF00772 DnaB-like helicase N terminal domain Tmath_2259 PF03796 DnaB-like helicase C terminal domain Tmath_2260 PF01281 Ribosomal protein L9, N-terminal domain Tmath_2260 PF03948 Ribosomal protein L9, C-terminal domain Tmath_2261 PF01368 DHH family Tmath_2261 PF02272 DHHA1 domain Tmath_2262 PF09991 Tmath_2262 Tmath_2263 PF12643 Tmath_2263 Tmath_2264 PF01084 Ribosomal protein S18 Tmath_2265 PF00436 Single-strand binding protein family Tmath_2266 PF01250 Ribosomal protein S6 Tmath_2267 PF06107 Tmath_2267 Tmath_2268 PF00924 Mechanosensitive ion channel Tmath_2269 PF06866 Tmath_2269 Tmath_2270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tmath_2270 PF02875 Mur ligase family, glutamate ligase domain Tmath_2270 PF08245 Mur ligase middle domain Tmath_2270 PF08443 RimK-like ATP-grasp domain Tmath_2271 PF03575 Peptidase family S51 Tmath_2273 PF14584 Tmath_2273 Tmath_2274 PF00266 Aminotransferase class-V Tmath_2275 PF02195 ParB-like nuclease domain Tmath_2276 PF13614 AAA domain Tmath_2277 PF02195 ParB-like nuclease domain Tmath_2278 PF00293 NUDIX domain Tmath_2280 PF02527 rRNA small subunit methyltransferase G Tmath_2281 PF01134 Glucose inhibited division protein A Tmath_2281 PF13932 GidA associated domain 3 Tmath_2282 PF01926 50S ribosome-binding GTPase Tmath_2282 PF10396 GTP-binding protein TrmE N-terminus Tmath_2282 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE Tmath_2283 PF01424 R3H domain Tmath_2283 PF13083 KH domain Tmath_2283 PF14804 Jag N-terminus Tmath_2284 PF02096 60Kd inner membrane protein Tmath_2285 PF01809 Tmath_2285 Tmath_2286 PF00825 Ribonuclease P Tmath_2287 PF00468 Ribosomal protein L34