Tmath_0001 SM00382 ATPases associated with a variety of cellular activities Tmath_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Tmath_0002 SM00480 DNA polymerase III beta subunit Tmath_0003 SM00363 S4 RNA-binding domain Tmath_0009 SM00387 Histidine kinase-like ATPases Tmath_0009 SM00433 TopoisomeraseII Tmath_0010 SM00434 DNA Topoisomerase IV Tmath_0024 SM00487 DEAD-like helicases superfamily Tmath_0024 SM00490 helicase superfamily c-terminal domain Tmath_0031 SM00881 CoA binding domain Tmath_0035 SM01329 Tmath_0035 Tmath_0049 SM00155 Phospholipase D. Active site motifs. Tmath_0051 SM00530 Helix-turn-helix XRE-family like proteins Tmath_0052 SM00530 Helix-turn-helix XRE-family like proteins Tmath_0067 SM00858 Tmath_0067 Tmath_0070 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0087 SM01022 Tmath_0087 Tmath_0092 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Tmath_0099 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tmath_0099 SM00091 PAS domain Tmath_0099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0099 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0100 SM00382 ATPases associated with a variety of cellular activities Tmath_0102 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_0102 SM00493 Tmath_0102 Tmath_0105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0110 SM00363 S4 RNA-binding domain Tmath_0121 SM00060 Fibronectin type 3 domain Tmath_0121 SM00632 Tmath_0121 Tmath_0121 SM00642 Alpha-amylase domain Tmath_0121 SM01065 Starch binding domain Tmath_0125 SM00986 Uracil DNA glycosylase superfamily Tmath_0125 SM00987 UreE urease accessory protein, C-terminal domain Tmath_0128 SM00382 ATPases associated with a variety of cellular activities Tmath_0152 SM00966 SpoVT / AbrB like domain Tmath_0158 SM01208 Tmath_0158 Tmath_0159 SM00650 Ribosomal RNA adenine dimethylases Tmath_0168 SM00382 ATPases associated with a variety of cellular activities Tmath_0171 SM00900 Tmath_0171 Tmath_0178 SM00357 Cold shock protein domain Tmath_0178 SM00382 ATPases associated with a variety of cellular activities Tmath_0178 SM00959 Rho termination factor, N-terminal domain Tmath_0183 SM00937 Tmath_0183 Tmath_0186 SM00226 Low molecular weight phosphatase family Tmath_0194 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Tmath_0194 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Tmath_0210 SM00382 ATPases associated with a variety of cellular activities Tmath_0215 SM00858 Tmath_0215 Tmath_0217 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Tmath_0221 SM00382 ATPases associated with a variety of cellular activities Tmath_0229 SM01350 Tmath_0229 Tmath_0247 SM00633 Glycosyl hydrolase family 10 Tmath_0251 SM00633 Glycosyl hydrolase family 10 Tmath_0257 SM01217 Tmath_0257 Tmath_0260 SM00354 helix_turn _helix lactose operon repressor Tmath_0263 SM00382 ATPases associated with a variety of cellular activities Tmath_0271 SM00382 ATPases associated with a variety of cellular activities Tmath_0281 SM00635 Bacterial Ig-like domain 2 Tmath_0289 SM00344 helix_turn_helix ASNC type Tmath_0290 SM00899 Tmath_0290 Tmath_0294 SM00382 ATPases associated with a variety of cellular activities Tmath_0303 SM00382 ATPases associated with a variety of cellular activities Tmath_0326 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0326 SM00387 Histidine kinase-like ATPases Tmath_0327 SM00342 helix_turn_helix, arabinose operon control protein Tmath_0327 SM00448 cheY-homologous receiver domain Tmath_0330 SM00382 ATPases associated with a variety of cellular activities Tmath_0344 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Tmath_0346 SM01007 Class II Aldolase and Adducin N-terminal domain Tmath_0358 SM00382 ATPases associated with a variety of cellular activities Tmath_0368 SM00382 ATPases associated with a variety of cellular activities Tmath_0379 SM00287 Bacterial SH3 domain homologues Tmath_0379 SM00854 Bacterial capsule synthesis protein PGA_cap Tmath_0383 SM00354 helix_turn _helix lactose operon repressor Tmath_0387 SM00382 ATPases associated with a variety of cellular activities Tmath_0388 SM00382 ATPases associated with a variety of cellular activities Tmath_0392 SM00382 ATPases associated with a variety of cellular activities Tmath_0411 SM00382 ATPases associated with a variety of cellular activities Tmath_0433 SM01004 Delta-aminolevulinic acid dehydratase Tmath_0436 SM00966 SpoVT / AbrB like domain Tmath_0441 SM00382 ATPases associated with a variety of cellular activities Tmath_0443 SM01329 Tmath_0443 Tmath_0447 SM00421 helix_turn_helix, Lux Regulon Tmath_0454 SM00382 ATPases associated with a variety of cellular activities Tmath_0457 SM00421 helix_turn_helix, Lux Regulon Tmath_0459 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_0462 SM00421 helix_turn_helix, Lux Regulon Tmath_0468 SM00382 ATPases associated with a variety of cellular activities Tmath_0470 SM00421 helix_turn_helix, Lux Regulon Tmath_0477 SM00382 ATPases associated with a variety of cellular activities Tmath_0484 SM00382 ATPases associated with a variety of cellular activities Tmath_0489 SM00421 helix_turn_helix, Lux Regulon Tmath_0492 SM00382 ATPases associated with a variety of cellular activities Tmath_0499 SM00890 Domain of unknown function Tmath_0500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0501 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tmath_0501 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0502 SM01221 Tmath_0502 Tmath_0502 SM01222 Tmath_0502 Tmath_0505 SM00642 Alpha-amylase domain Tmath_0509 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0510 SM00342 helix_turn_helix, arabinose operon control protein Tmath_0510 SM00448 cheY-homologous receiver domain Tmath_0515 SM00382 ATPases associated with a variety of cellular activities Tmath_0518 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tmath_0518 SM00866 Tmath_0518 Tmath_0521 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Tmath_0522 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tmath_0526 SM01061 CAT RNA binding domain Tmath_0544 SM00354 helix_turn _helix lactose operon repressor Tmath_0545 SM00448 cheY-homologous receiver domain Tmath_0545 SM00862 Transcriptional regulatory protein, C terminal Tmath_0546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0546 SM00387 Histidine kinase-like ATPases Tmath_0546 SM00388 His Kinase A (phosphoacceptor) domain Tmath_0547 SM00909 Sporulation and spore germination Tmath_0556 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_0556 SM00382 ATPases associated with a variety of cellular activities Tmath_0575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tmath_0575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0577 SM00062 Bacterial periplasmic substrate-binding proteins Tmath_0577 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Tmath_0579 SM00382 ATPases associated with a variety of cellular activities Tmath_0582 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0586 SM00957 SecA DEAD-like domain Tmath_0586 SM00958 SecA preprotein cross-linking domain Tmath_0588 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_0588 SM00732 Likely ribonuclease with RNase H fold. Tmath_0603 SM00382 ATPases associated with a variety of cellular activities Tmath_0606 SM00881 CoA binding domain Tmath_0608 SM00448 cheY-homologous receiver domain Tmath_0608 SM00850 LytTr DNA-binding domain Tmath_0609 SM00387 Histidine kinase-like ATPases Tmath_0610 SM00793 Accessory gene regulator B Tmath_0616 SM00478 endonuclease III Tmath_0624 SM00883 Chaperonin 10 Kd subunit Tmath_0626 SM00116 Domain in cystathionine beta-synthase and other proteins. Tmath_0626 SM01240 Tmath_0626 Tmath_0629 SM01001 AIR carboxylase Tmath_0632 SM01211 Tmath_0632 Tmath_0637 SM00798 AICARFT/IMPCHase bienzyme Tmath_0637 SM00851 MGS-like domain Tmath_0638 SM01209 Tmath_0638 Tmath_0638 SM01210 Tmath_0638 Tmath_0642 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_0642 SM00876 Biotin and Thiamin Synthesis associated domain Tmath_0650 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_0650 SM00292 breast cancer carboxy-terminal domain Tmath_0650 SM00532 Ligase N family Tmath_0653 SM00845 GatB domain Tmath_0655 SM00646 Tmath_0655 Tmath_0661 SM00382 ATPases associated with a variety of cellular activities Tmath_0676 SM00382 ATPases associated with a variety of cellular activities Tmath_0677 SM00382 ATPases associated with a variety of cellular activities Tmath_0687 SM00382 ATPases associated with a variety of cellular activities Tmath_0687 SM00994 ClpX C4-type zinc finger Tmath_0687 SM01086 C-terminal, D2-small domain, of ClpB protein Tmath_0688 SM00382 ATPases associated with a variety of cellular activities Tmath_0688 SM00464 Found in ATP-dependent protease La (LON) Tmath_0697 SM00382 ATPases associated with a variety of cellular activities Tmath_0702 SM00382 ATPases associated with a variety of cellular activities Tmath_0704 SM00028 Tetratricopeptide repeats Tmath_0706 SM00116 Domain in cystathionine beta-synthase and other proteins. Tmath_0706 SM00924 MgtE intracellular N domain Tmath_0711 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tmath_0718 SM00858 Tmath_0718 Tmath_0759 SM00422 helix_turn_helix, mercury resistance Tmath_0764 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Tmath_0764 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tmath_0770 SM00831 Cation transporter/ATPase, N-terminus Tmath_0771 SM00562 Tmath_0771 Tmath_0779 SM01001 AIR carboxylase Tmath_0782 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0782 SM00387 Histidine kinase-like ATPases Tmath_0782 SM00388 His Kinase A (phosphoacceptor) domain Tmath_0783 SM00448 cheY-homologous receiver domain Tmath_0783 SM00862 Transcriptional regulatory protein, C terminal Tmath_0795 SM00354 helix_turn _helix lactose operon repressor Tmath_0801 SM00354 helix_turn _helix lactose operon repressor Tmath_0808 SM00382 ATPases associated with a variety of cellular activities Tmath_0809 SM00257 Lysin motif Tmath_0815 SM01130 Tmath_0815 Tmath_0816 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tmath_0818 SM00382 ATPases associated with a variety of cellular activities Tmath_0819 SM00382 ATPases associated with a variety of cellular activities Tmath_0821 SM01230 Tmath_0821 Tmath_0822 SM00448 cheY-homologous receiver domain Tmath_0822 SM01012 Tmath_0822 Tmath_0824 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tmath_0841 SM00382 ATPases associated with a variety of cellular activities Tmath_0844 SM00636 Tmath_0844 Tmath_0850 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Tmath_0850 SM00475 5'-3' exonuclease Tmath_0850 SM00482 DNA polymerase A domain Tmath_0856 SM00287 Bacterial SH3 domain homologues Tmath_0857 SM00838 Elongation factor G C-terminus Tmath_0864 SM00481 DNA polymerase alpha chain like domain Tmath_0866 SM00387 Histidine kinase-like ATPases Tmath_0868 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tmath_0869 SM00902 Iron hydrogenase small subunit Tmath_0869 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tmath_0881 SM00851 MGS-like domain Tmath_0884 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_0886 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_0899 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0906 SM00936 Penicillin-binding protein 5, C-terminal domain Tmath_0907 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_0919 SM00849 Metallo-beta-lactamase superfamily Tmath_0920 SM00849 Metallo-beta-lactamase superfamily Tmath_0932 SM00838 Elongation factor G C-terminus Tmath_0933 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_0937 SM00271 DnaJ molecular chaperone homology domain Tmath_0944 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tmath_0947 SM00448 cheY-homologous receiver domain Tmath_0947 SM00862 Transcriptional regulatory protein, C terminal Tmath_0948 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_0948 SM00387 Histidine kinase-like ATPases Tmath_0948 SM00388 His Kinase A (phosphoacceptor) domain Tmath_0955 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_0962 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0964 SM00014 Acid phosphatase homologues Tmath_0966 SM01133 Tmath_0966 Tmath_0973 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_0974 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_0974 SM00357 Cold shock protein domain Tmath_0974 SM00955 Tmath_0974 Tmath_0979 SM00530 Helix-turn-helix XRE-family like proteins Tmath_0985 SM00382 ATPases associated with a variety of cellular activities Tmath_0990 SM00382 ATPases associated with a variety of cellular activities Tmath_0993 SM00382 ATPases associated with a variety of cellular activities Tmath_1003 SM00419 helix_turn_helix, cAMP Regulatory protein Tmath_1009 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1010 SM00506 Appr-1"-p processing enzyme Tmath_1016 SM00849 Metallo-beta-lactamase superfamily Tmath_1017 SM00226 Low molecular weight phosphatase family Tmath_1019 SM01350 Tmath_1019 Tmath_1032 SM00257 Lysin motif Tmath_1036 SM00448 cheY-homologous receiver domain Tmath_1036 SM00862 Transcriptional regulatory protein, C terminal Tmath_1037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_1037 SM00387 Histidine kinase-like ATPases Tmath_1037 SM00388 His Kinase A (phosphoacceptor) domain Tmath_1054 SM00881 CoA binding domain Tmath_1059 SM00260 Two component signalling adaptor domain Tmath_1062 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_1063 SM00382 ATPases associated with a variety of cellular activities Tmath_1068 SM01323 Tmath_1068 Tmath_1075 SM00220 Serine/Threonine protein kinases, catalytic domain Tmath_1078 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_1078 SM00954 Region found in RelA / SpoT proteins Tmath_1080 SM00849 Metallo-beta-lactamase superfamily Tmath_1082 SM00382 ATPases associated with a variety of cellular activities Tmath_1084 SM00347 helix_turn_helix multiple antibiotic resistance protein Tmath_1096 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1098 SM00732 Likely ribonuclease with RNase H fold. Tmath_1101 SM00849 Metallo-beta-lactamase superfamily Tmath_1111 SM00382 ATPases associated with a variety of cellular activities Tmath_1112 SM00382 ATPases associated with a variety of cellular activities Tmath_1121 SM00842 Cell division protein FtsA Tmath_1125 SM00518 AP endonuclease family 2 Tmath_1126 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Tmath_1130 SM00841 Elongation factor P, C-terminal Tmath_1130 SM01185 Tmath_1130 Tmath_1132 SM00382 ATPases associated with a variety of cellular activities Tmath_1147 SM00861 Transketolase, pyrimidine binding domain Tmath_1148 SM00363 S4 RNA-binding domain Tmath_1153 SM00448 cheY-homologous receiver domain Tmath_1164 SM00936 Penicillin-binding protein 5, C-terminal domain Tmath_1166 SM00387 Histidine kinase-like ATPases Tmath_1179 SM00936 Penicillin-binding protein 5, C-terminal domain Tmath_1182 SM00363 S4 RNA-binding domain Tmath_1187 SM00257 Lysin motif Tmath_1192 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tmath_1194 SM00855 Phosphoglycerate mutase family Tmath_1199 SM00563 Phosphate acyltransferases Tmath_1202 SM00138 Methyltransferase, chemotaxis proteins Tmath_1203 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1204 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tmath_1204 SM00534 ATPase domain of DNA mismatch repair MUTS family Tmath_1212 SM00382 ATPases associated with a variety of cellular activities Tmath_1213 SM00998 Adenylosuccinate lyase C-terminus Tmath_1215 SM00481 DNA polymerase alpha chain like domain Tmath_1218 SM00322 K homology RNA-binding domain Tmath_1218 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_1220 SM00382 ATPases associated with a variety of cellular activities Tmath_1221 SM00852 Probable molybdopterin binding domain Tmath_1223 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1224 SM00382 ATPases associated with a variety of cellular activities Tmath_1224 SM00843 Tmath_1224 Tmath_1232 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_1232 SM00322 K homology RNA-binding domain Tmath_1233 SM01387 Tmath_1233 Tmath_1234 SM00904 Riboflavin kinase Tmath_1241 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_1243 SM00479 Tmath_1243 Tmath_1243 SM00481 DNA polymerase alpha chain like domain Tmath_1246 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tmath_1260 SM00260 Two component signalling adaptor domain Tmath_1261 SM00073 Histidine Phosphotransfer domain Tmath_1261 SM00260 Two component signalling adaptor domain Tmath_1261 SM00387 Histidine kinase-like ATPases Tmath_1261 SM01231 Tmath_1261 Tmath_1265 SM00382 ATPases associated with a variety of cellular activities Tmath_1265 SM00962 SRP54-type protein, GTPase domain Tmath_1272 SM00448 cheY-homologous receiver domain Tmath_1283 SM00382 ATPases associated with a variety of cellular activities Tmath_1291 SM00382 ATPases associated with a variety of cellular activities Tmath_1291 SM01086 C-terminal, D2-small domain, of ClpB protein Tmath_1293 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Tmath_1293 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Tmath_1293 SM00493 Tmath_1293 Tmath_1299 SM00382 ATPases associated with a variety of cellular activities Tmath_1306 SM00382 ATPases associated with a variety of cellular activities Tmath_1306 SM00962 SRP54-type protein, GTPase domain Tmath_1306 SM00963 SRP54-type protein, helical bundle domain Tmath_1308 SM00382 ATPases associated with a variety of cellular activities Tmath_1308 SM00962 SRP54-type protein, GTPase domain Tmath_1308 SM00963 SRP54-type protein, helical bundle domain Tmath_1309 SM00968 SMC proteins Flexible Hinge Domain Tmath_1312 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1315 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1315 SM00876 Biotin and Thiamin Synthesis associated domain Tmath_1323 SM00938 Nitrogen regulatory protein P-II Tmath_1325 SM01230 Tmath_1325 Tmath_1327 SM00358 Double-stranded RNA binding motif Tmath_1327 SM00535 Ribonuclease III family Tmath_1328 SM00825 Beta-ketoacyl synthase Tmath_1329 SM00823 Phosphopantetheine attachment site Tmath_1330 SM00822 Tmath_1330 Tmath_1331 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Tmath_1348 SM00487 DEAD-like helicases superfamily Tmath_1348 SM00490 helicase superfamily c-terminal domain Tmath_1349 SM01120 Tmath_1349 Tmath_1349 SM01121 Tmath_1349 Tmath_1353 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Tmath_1356 SM00220 Serine/Threonine protein kinases, catalytic domain Tmath_1356 SM00740 Tmath_1356 Tmath_1357 SM00331 Sigma factor PP2C-like phosphatases Tmath_1357 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Tmath_1364 SM00487 DEAD-like helicases superfamily Tmath_1364 SM00490 helicase superfamily c-terminal domain Tmath_1366 SM01409 Tmath_1366 Tmath_1367 SM00072 Guanylate kinase homologues. Tmath_1375 SM00382 ATPases associated with a variety of cellular activities Tmath_1375 SM00930 Tmath_1375 Tmath_1380 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Tmath_1385 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Tmath_1390 SM00363 S4 RNA-binding domain Tmath_1409 SM00460 Transglutaminase/protease-like homologues Tmath_1428 SM01007 Class II Aldolase and Adducin N-terminal domain Tmath_1435 SM00363 S4 RNA-binding domain Tmath_1446 SM01207 Tmath_1446 Tmath_1456 SM00382 ATPases associated with a variety of cellular activities Tmath_1460 SM00091 PAS domain Tmath_1460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_1460 SM00387 Histidine kinase-like ATPases Tmath_1460 SM00388 His Kinase A (phosphoacceptor) domain Tmath_1461 SM00448 cheY-homologous receiver domain Tmath_1461 SM00862 Transcriptional regulatory protein, C terminal Tmath_1467 SM00864 Tubulin/FtsZ family, GTPase domain Tmath_1467 SM00865 Tubulin/FtsZ family, C-terminal domain Tmath_1468 SM00842 Cell division protein FtsA Tmath_1479 SM00740 Tmath_1479 Tmath_1488 SM00981 Tmath_1488 Tmath_1493 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1497 SM00530 Helix-turn-helix XRE-family like proteins Tmath_1503 SM00420 helix_turn_helix, Deoxyribose operon repressor Tmath_1511 SM00857 Resolvase, N terminal domain Tmath_1515 SM00421 helix_turn_helix, Lux Regulon Tmath_1515 SM00448 cheY-homologous receiver domain Tmath_1516 SM00387 Histidine kinase-like ATPases Tmath_1519 SM00463 Small MutS-related domain Tmath_1519 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tmath_1519 SM00534 ATPase domain of DNA mismatch repair MUTS family Tmath_1522 SM00873 B3/4 domain Tmath_1522 SM00874 tRNA synthetase B5 domain Tmath_1522 SM00896 Ferredoxin-fold anticodon binding domain Tmath_1524 SM00967 RNA 2'-O ribose methyltransferase substrate binding Tmath_1530 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tmath_1536 SM00357 Cold shock protein domain Tmath_1541 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tmath_1555 SM00400 zinc finger Tmath_1555 SM00493 Tmath_1555 Tmath_1556 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tmath_1558 SM01192 Tmath_1558 Tmath_1558 SM01193 Tmath_1558 Tmath_1562 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tmath_1568 SM01208 Tmath_1568 Tmath_1569 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_1569 SM00478 endonuclease III Tmath_1569 SM00525 Tmath_1569 Tmath_1574 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1575 SM00382 ATPases associated with a variety of cellular activities Tmath_1581 SM00382 ATPases associated with a variety of cellular activities Tmath_1582 SM01207 Tmath_1582 Tmath_1591 SM01018 B12 binding domain Tmath_1610 SM00917 LeuA allosteric (dimerisation) domain Tmath_1613 SM00116 Domain in cystathionine beta-synthase and other proteins. Tmath_1613 SM00382 ATPases associated with a variety of cellular activities Tmath_1614 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tmath_1622 SM00481 DNA polymerase alpha chain like domain Tmath_1623 SM00116 Domain in cystathionine beta-synthase and other proteins. Tmath_1627 SM00642 Alpha-amylase domain Tmath_1634 SM00632 Tmath_1634 Tmath_1634 SM00642 Alpha-amylase domain Tmath_1637 SM00481 DNA polymerase alpha chain like domain Tmath_1653 SM00382 ATPases associated with a variety of cellular activities Tmath_1656 SM00382 ATPases associated with a variety of cellular activities Tmath_1660 SM00729 Elongator protein 3, MiaB family, Radical SAM Tmath_1660 SM00876 Biotin and Thiamin Synthesis associated domain Tmath_1661 SM00849 Metallo-beta-lactamase superfamily Tmath_1671 SM00354 helix_turn _helix lactose operon repressor Tmath_1673 SM00640 Glycosyl hydrolases family 32 Tmath_1684 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tmath_1685 SM01007 Class II Aldolase and Adducin N-terminal domain Tmath_1690 SM00813 Alpha-L-arabinofuranosidase C-terminus Tmath_1691 SM00813 Alpha-L-arabinofuranosidase C-terminus Tmath_1697 SM00382 ATPases associated with a variety of cellular activities Tmath_1702 SM00872 Alpha mannosidase, middle domain Tmath_1703 SM00342 helix_turn_helix, arabinose operon control protein Tmath_1710 SM00419 helix_turn_helix, cAMP Regulatory protein Tmath_1723 SM01350 Tmath_1723 Tmath_1727 SM00420 helix_turn_helix, Deoxyribose operon repressor Tmath_1727 SM01134 Tmath_1727 Tmath_1733 SM00354 helix_turn _helix lactose operon repressor Tmath_1743 SM00481 DNA polymerase alpha chain like domain Tmath_1747 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_1747 SM00465 GIY-YIG type nucleases (URI domain) Tmath_1750 SM00240 Forkhead associated domain Tmath_1751 SM00382 ATPases associated with a variety of cellular activities Tmath_1752 SM00487 DEAD-like helicases superfamily Tmath_1752 SM00490 helicase superfamily c-terminal domain Tmath_1754 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tmath_1755 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tmath_1755 SM00245 tail specific protease Tmath_1758 SM00382 ATPases associated with a variety of cellular activities Tmath_1760 SM00382 ATPases associated with a variety of cellular activities Tmath_1769 SM00842 Cell division protein FtsA Tmath_1771 SM00382 ATPases associated with a variety of cellular activities Tmath_1775 SM01120 Tmath_1775 Tmath_1777 SM00091 PAS domain Tmath_1777 SM00382 ATPases associated with a variety of cellular activities Tmath_1806 SM00382 ATPases associated with a variety of cellular activities Tmath_1807 SM01068 Putative carbohydrate binding domain Tmath_1814 SM00448 cheY-homologous receiver domain Tmath_1815 SM00448 cheY-homologous receiver domain Tmath_1816 SM00028 Tetratricopeptide repeats Tmath_1816 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Tmath_1819 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tmath_1819 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Tmath_1819 SM00091 PAS domain Tmath_1819 SM00387 Histidine kinase-like ATPases Tmath_1822 SM00861 Transketolase, pyrimidine binding domain Tmath_1831 SM01005 Alanine racemase, C-terminal domain Tmath_1837 SM00530 Helix-turn-helix XRE-family like proteins Tmath_1841 SM00257 Lysin motif Tmath_1842 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Tmath_1861 SM00487 DEAD-like helicases superfamily Tmath_1869 SM00563 Phosphate acyltransferases Tmath_1879 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tmath_1888 SM00646 Tmath_1888 Tmath_1889 SM00257 Lysin motif Tmath_1902 SM00382 ATPases associated with a variety of cellular activities Tmath_1903 SM00382 ATPases associated with a variety of cellular activities Tmath_1905 SM00662 RNA polymerases D Tmath_1906 SM00363 S4 RNA-binding domain Tmath_1906 SM01390 Tmath_1906 Tmath_1910 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_1922 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tmath_1923 SM01374 Tmath_1923 Tmath_1927 SM00322 K homology RNA-binding domain Tmath_1930 SM01382 Tmath_1930 Tmath_1930 SM01383 Tmath_1930 Tmath_1934 SM01403 Tmath_1934 Tmath_1938 SM00967 RNA 2'-O ribose methyltransferase substrate binding Tmath_1940 SM00840 Tmath_1940 Tmath_1948 SM00670 Large family of predicted nucleotide-binding domains Tmath_1950 SM00382 ATPases associated with a variety of cellular activities Tmath_1952 SM00632 Tmath_1952 Tmath_1952 SM00642 Alpha-amylase domain Tmath_1952 SM01065 Starch binding domain Tmath_1956 SM00529 Helix-turn-helix diphteria tox regulatory element Tmath_1957 SM00382 ATPases associated with a variety of cellular activities Tmath_1957 SM01086 C-terminal, D2-small domain, of ClpB protein Tmath_1962 SM00919 Malic enzyme, NAD binding domain Tmath_1962 SM01274 Tmath_1962 Tmath_1963 SM00838 Elongation factor G C-terminus Tmath_1963 SM00889 Elongation factor G, domain IV Tmath_1965 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tmath_1965 SM00267 diguanylate cyclase Tmath_1973 SM00382 ATPases associated with a variety of cellular activities Tmath_1975 SM00382 ATPases associated with a variety of cellular activities Tmath_1980 SM00530 Helix-turn-helix XRE-family like proteins Tmath_1986 SM00530 Helix-turn-helix XRE-family like proteins Tmath_2013 SM00091 PAS domain Tmath_2013 SM00387 Histidine kinase-like ATPases Tmath_2013 SM00388 His Kinase A (phosphoacceptor) domain Tmath_2014 SM00382 ATPases associated with a variety of cellular activities Tmath_2016 SM00977 TilS substrate C-terminal domain Tmath_2017 SM00331 Sigma factor PP2C-like phosphatases Tmath_2023 SM00890 Domain of unknown function Tmath_2026 SM00646 Tmath_2026 Tmath_2027 SM00052 Putative diguanylate phosphodiesterase Tmath_2027 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Tmath_2027 SM00091 PAS domain Tmath_2027 SM00267 diguanylate cyclase Tmath_2033 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tmath_2043 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Tmath_2050 SM00316 Ribosomal protein S1-like RNA-binding domain Tmath_2053 SM00116 Domain in cystathionine beta-synthase and other proteins. Tmath_2053 SM01131 Tmath_2053 Tmath_2058 SM00363 S4 RNA-binding domain Tmath_2059 SM00411 bacterial (prokaryotic) histone like domain Tmath_2061 SM00028 Tetratricopeptide repeats Tmath_2061 SM00530 Helix-turn-helix XRE-family like proteins Tmath_2063 SM00173 Ras subfamily of RAS small GTPases Tmath_2066 SM00900 Tmath_2066 Tmath_2073 SM00855 Phosphoglycerate mutase family Tmath_2075 SM00831 Cation transporter/ATPase, N-terminus Tmath_2078 SM00382 ATPases associated with a variety of cellular activities Tmath_2079 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tmath_2082 SM00966 SpoVT / AbrB like domain Tmath_2085 SM00851 MGS-like domain Tmath_2085 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tmath_2086 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Tmath_2090 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tmath_2091 SM00331 Sigma factor PP2C-like phosphatases Tmath_2092 SM00091 PAS domain Tmath_2094 SM00829 Enoylreductase Tmath_2097 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tmath_2097 SM00481 DNA polymerase alpha chain like domain Tmath_2097 SM00483 DNA polymerase X family Tmath_2103 SM00831 Cation transporter/ATPase, N-terminus Tmath_2104 SM00014 Acid phosphatase homologues Tmath_2106 SM00382 ATPases associated with a variety of cellular activities Tmath_2107 SM00382 ATPases associated with a variety of cellular activities Tmath_2108 SM00347 helix_turn_helix multiple antibiotic resistance protein Tmath_2117 SM00382 ATPases associated with a variety of cellular activities Tmath_2118 SM00382 ATPases associated with a variety of cellular activities Tmath_2120 SM00836 DALR anticodon binding domain Tmath_2120 SM01016 Arginyl tRNA synthetase N terminal dom Tmath_2132 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tmath_2132 SM00895 Tmath_2132 Tmath_2134 SM00257 Lysin motif Tmath_2137 SM00966 SpoVT / AbrB like domain Tmath_2139 SM00487 DEAD-like helicases superfamily Tmath_2139 SM00490 helicase superfamily c-terminal domain Tmath_2139 SM00982 Tmath_2139 Tmath_2139 SM01058 CarD-like/TRCF domain Tmath_2142 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tmath_2143 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_2143 SM00387 Histidine kinase-like ATPases Tmath_2143 SM00388 His Kinase A (phosphoacceptor) domain Tmath_2144 SM00448 cheY-homologous receiver domain Tmath_2144 SM00862 Transcriptional regulatory protein, C terminal Tmath_2145 SM01400 Tmath_2145 Tmath_2153 SM00354 helix_turn _helix lactose operon repressor Tmath_2161 SM00420 helix_turn_helix, Deoxyribose operon repressor Tmath_2161 SM01134 Tmath_2161 Tmath_2165 SM00287 Bacterial SH3 domain homologues Tmath_2166 SM00670 Large family of predicted nucleotide-binding domains Tmath_2170 SM00849 Metallo-beta-lactamase superfamily Tmath_2170 SM01027 Beta-Casp domain Tmath_2176 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tmath_2176 SM00245 tail specific protease Tmath_2182 SM00849 Metallo-beta-lactamase superfamily Tmath_2196 SM00487 DEAD-like helicases superfamily Tmath_2202 SM00636 Tmath_2202 Tmath_2207 SM00382 ATPases associated with a variety of cellular activities Tmath_2208 SM00883 Chaperonin 10 Kd subunit Tmath_2216 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tmath_2221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_2221 SM00387 Histidine kinase-like ATPases Tmath_2221 SM00388 His Kinase A (phosphoacceptor) domain Tmath_2222 SM00448 cheY-homologous receiver domain Tmath_2222 SM00862 Transcriptional regulatory protein, C terminal Tmath_2224 SM00257 Lysin motif Tmath_2224 SM01208 Tmath_2224 Tmath_2226 SM00382 ATPases associated with a variety of cellular activities Tmath_2229 SM00849 Metallo-beta-lactamase superfamily Tmath_2231 SM00788 Adenylosuccinate synthetase Tmath_2233 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tmath_2233 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tmath_2243 SM00382 ATPases associated with a variety of cellular activities Tmath_2258 SM00100 Cyclic nucleotide-monophosphate binding domain Tmath_2258 SM00419 helix_turn_helix, cAMP Regulatory protein Tmath_2259 SM00382 ATPases associated with a variety of cellular activities Tmath_2275 SM00470 ParB-like nuclease domain Tmath_2277 SM00470 ParB-like nuclease domain Tmath_2281 SM01228 Tmath_2281 Tmath_2283 SM00393 Putative single-stranded nucleic acids-binding domain Tmath_2283 SM01245 Tmath_2283 Tmath_2285 SM01234 Tmath_2285