locus-tag class description Thewi_0001 PF00308 Bacterial dnaA protein Thewi_0001 PF08299 Bacterial dnaA protein helix-turn-helix Thewi_0001 PF11638 DnaA N-terminal domain Thewi_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Thewi_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Thewi_0002 PF02767 DNA polymerase III beta subunit, central domain Thewi_0004 PF02463 RecF/RecN/SMC N terminal domain Thewi_0006 PF13802 Galactose mutarotase-like Thewi_0006 PF01055 Glycosyl hydrolases family 31 Thewi_0006 PF16338 Domain of unknown function (DUF4968) Thewi_0006 PF17137 Domain of unknown function (DUF5110) Thewi_0007 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thewi_0008 PF08353 Domain of unknown function (DUF1727) Thewi_0008 PF08245 Mur ligase middle domain Thewi_0009 PF01588 Putative tRNA binding domain Thewi_0010 PF00986 DNA gyrase B subunit, carboxyl terminus Thewi_0010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0010 PF01751 Toprim domain Thewi_0010 PF00204 DNA gyrase B Thewi_0011 PF03989 DNA gyrase C-terminal domain, beta-propeller Thewi_0011 PF00521 DNA gyrase/topoisomerase IV, subunit A Thewi_0012 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thewi_0013 PF10369 Small subunit of acetolactate synthase Thewi_0014 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thewi_0014 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thewi_0015 PF00682 HMGL-like Thewi_0016 PF00330 Aconitase family (aconitate hydratase) Thewi_0017 PF00694 Aconitase C-terminal domain Thewi_0018 PF00180 Isocitrate/isopropylmalate dehydrogenase Thewi_0019 PF00920 Dehydratase family Thewi_0020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thewi_0020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thewi_0020 PF00205 Thiamine pyrophosphate enzyme, central domain Thewi_0021 PF01872 RibD C-terminal domain Thewi_0021 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thewi_0022 PF00677 Lumazine binding domain Thewi_0023 PF00925 GTP cyclohydrolase II Thewi_0023 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thewi_0024 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thewi_0025 PF01594 AI-2E family transporter Thewi_0027 PF10502 Signal peptidase, peptidase S26 Thewi_0028 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thewi_0028 PF02403 Seryl-tRNA synthetase N-terminal domain Thewi_0029 PF03816 Cell envelope-related transcriptional attenuator domain Thewi_0039 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Thewi_0041 PF00361 Proton-conducting membrane transporter Thewi_0042 PF00146 NADH dehydrogenase Thewi_0043 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thewi_0044 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Thewi_0044 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thewi_0045 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thewi_0046 PF12838 4Fe-4S dicluster domain Thewi_0050 PF13722 5TM C-terminal transporter carbon starvation CstA Thewi_0050 PF02554 Carbon starvation protein CstA Thewi_0051 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thewi_0057 PF14437 MafB19-like deaminase Thewi_0058 PF01966 HD domain Thewi_0059 PF12169 DNA polymerase III subunits gamma and tau domain III Thewi_0060 PF02575 YbaB/EbfC DNA-binding family Thewi_0061 PF13662 Toprim domain Thewi_0061 PF02132 RecR protein Thewi_0061 PF00633 Helix-hairpin-helix motif Thewi_0062 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thewi_0063 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thewi_0064 PF01966 HD domain Thewi_0069 PF00849 RNA pseudouridylate synthase Thewi_0069 PF01479 S4 domain Thewi_0070 PF00356 Bacterial regulatory proteins, lacI family Thewi_0071 PF01547 Bacterial extracellular solute-binding protein Thewi_0073 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0075 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thewi_0076 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thewi_0077 PF00483 Nucleotidyl transferase Thewi_0082 PF08361 MAATS-type transcriptional repressor, C-terminal region Thewi_0082 PF00440 Bacterial regulatory proteins, tetR family Thewi_0084 PF02903 Alpha amylase, N-terminal ig-like domain Thewi_0084 PF00686 Starch binding domain Thewi_0084 PF00128 Alpha amylase, catalytic domain Thewi_0085 PF01171 PP-loop family Thewi_0086 PF05681 Fumarate hydratase (Fumerase) Thewi_0086 PF05683 Fumarase C-terminus Thewi_0088 PF03167 Uracil DNA glycosylase superfamily Thewi_0090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thewi_0090 PF03466 LysR substrate binding domain Thewi_0091 PF01206 Sulfurtransferase TusA Thewi_0092 PF04143 Sulphur transport Thewi_0096 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thewi_0096 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_0097 PF01597 Glycine cleavage H-protein Thewi_0099 PF00480 ROK family Thewi_0100 PF00117 Glutamine amidotransferase class-I Thewi_0100 PF13302 Acetyltransferase (GNAT) domain Thewi_0100 PF03352 Methyladenine glycosylase Thewi_0100 PF00958 GMP synthase C terminal domain Thewi_0100 PF13673 Acetyltransferase (GNAT) domain Thewi_0101 PF10764 Inhibitor of sigma-G Gin Thewi_0102 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thewi_0102 PF01276 Orn/Lys/Arg decarboxylase, major domain Thewi_0103 PF02223 Thymidylate kinase Thewi_0104 PF06153 Cyclic-di-AMP receptor Thewi_0106 PF09115 DNA polymerase III, delta subunit, C terminal Thewi_0107 PF04468 PSP1 C-terminal conserved region Thewi_0109 PF01925 Sulfite exporter TauE/SafE Thewi_0110 PF06782 Uncharacterised protein family (UPF0236) Thewi_0113 PF05175 Methyltransferase small domain Thewi_0114 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thewi_0115 PF16916 Dimerisation domain of Zinc Transporter Thewi_0115 PF01545 Cation efflux family Thewi_0116 PF18277 AbrB C-terminal domain Thewi_0116 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thewi_0117 PF07670 Nucleoside recognition Thewi_0118 PF07670 Nucleoside recognition Thewi_0119 PF01966 HD domain Thewi_0119 PF12627 Probable RNA and SrmB- binding site of polymerase A Thewi_0119 PF01743 Poly A polymerase head domain Thewi_0121 PF08264 Anticodon-binding domain of tRNA Thewi_0121 PF01588 Putative tRNA binding domain Thewi_0121 PF09334 tRNA synthetases class I (M) Thewi_0122 PF01026 TatD related DNase Thewi_0123 PF06725 3D domain Thewi_0123 PF03990 G5-linked-Ubiquitin-like domain Thewi_0123 PF07501 G5 domain Thewi_0124 PF00398 Ribosomal RNA adenine dimethylase Thewi_0129 PF04542 Sigma-70 region 2 Thewi_0130 PF10609 NUBPL iron-transfer P-loop NTPase Thewi_0130 PF01883 Iron-sulfur cluster assembly protein Thewi_0133 PF06480 FtsH Extracellular Thewi_0133 PF00004 ATPase family associated with various cellular activities (AAA) Thewi_0133 PF17862 AAA+ lid domain Thewi_0133 PF01434 Peptidase family M41 Thewi_0134 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thewi_0134 PF00361 Proton-conducting membrane transporter Thewi_0134 PF13244 Domain of unknown function (DUF4040) Thewi_0135 PF00146 NADH dehydrogenase Thewi_0136 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thewi_0138 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thewi_0138 PF00374 Nickel-dependent hydrogenase Thewi_0139 PF12838 4Fe-4S dicluster domain Thewi_0140 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thewi_0142 PF07503 HypF finger Thewi_0142 PF17788 HypF Kae1-like domain Thewi_0142 PF00708 Acylphosphatase Thewi_0142 PF01300 Telomere recombination Thewi_0143 PF01455 HupF/HypC family Thewi_0144 PF01924 Hydrogenase formation hypA family Thewi_0145 PF00586 AIR synthase related protein, N-terminal domain Thewi_0145 PF02769 AIR synthase related protein, C-terminal domain Thewi_0147 PF00486 Transcriptional regulatory protein, C terminal Thewi_0147 PF00072 Response regulator receiver domain Thewi_0148 PF01116 Fructose-bisphosphate aldolase class-II Thewi_0149 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thewi_0149 PF07497 Rho termination factor, RNA-binding domain Thewi_0149 PF07498 Rho termination factor, N-terminal domain Thewi_0150 PF01197 Ribosomal protein L31 Thewi_0151 PF00265 Thymidine kinase Thewi_0152 PF07136 Protein of unknown function (DUF1385) Thewi_0153 PF17827 PrmC N-terminal domain Thewi_0153 PF05175 Methyltransferase small domain Thewi_0156 PF01300 Telomere recombination Thewi_0156 PF03481 Putative GTP-binding controlling metal-binding Thewi_0157 PF02502 Ribose/Galactose Isomerase Thewi_0160 PF00953 Glycosyl transferase family 4 Thewi_0161 PF02350 UDP-N-acetylglucosamine 2-epimerase Thewi_0164 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thewi_0167 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thewi_0167 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thewi_0174 PF08486 Stage II sporulation protein Thewi_0176 PF12116 Stage III sporulation protein D Thewi_0178 PF00460 Flagella basal body rod protein Thewi_0178 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thewi_0179 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thewi_0179 PF00460 Flagella basal body rod protein Thewi_0181 PF07977 FabA-like domain Thewi_0182 PF03023 Lipid II flippase MurJ Thewi_0188 PF00158 Sigma-54 interaction domain Thewi_0188 PF00874 PRD domain Thewi_0188 PF03610 PTS system fructose IIA component Thewi_0189 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_0189 PF02378 Phosphotransferase system, EIIC Thewi_0189 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_0193 PF00107 Zinc-binding dehydrogenase Thewi_0193 PF08240 Alcohol dehydrogenase GroES-like domain Thewi_0196 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_0197 PF03611 PTS system sugar-specific permease component Thewi_0198 PF02615 Malate/L-lactate dehydrogenase Thewi_0201 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_0201 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_0201 PF01842 ACT domain Thewi_0204 PF13378 Enolase C-terminal domain-like Thewi_0204 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Thewi_0206 PF01081 KDPG and KHG aldolase Thewi_0207 PF07690 Major Facilitator Superfamily Thewi_0209 PF00874 PRD domain Thewi_0209 PF00158 Sigma-54 interaction domain Thewi_0209 PF03610 PTS system fructose IIA component Thewi_0210 PF03830 PTS system sorbose subfamily IIB component Thewi_0211 PF03609 PTS system sorbose-specific iic component Thewi_0212 PF03613 PTS system mannose/fructose/sorbose family IID component Thewi_0213 PF03610 PTS system fructose IIA component Thewi_0214 PF01116 Fructose-bisphosphate aldolase class-II Thewi_0215 PF00294 pfkB family carbohydrate kinase Thewi_0216 PF01380 SIS domain Thewi_0218 PF02254 TrkA-N domain Thewi_0218 PF02080 TrkA-C domain Thewi_0219 PF01261 Xylose isomerase-like TIM barrel Thewi_0220 PF01261 Xylose isomerase-like TIM barrel Thewi_0221 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thewi_0221 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thewi_0222 PF01547 Bacterial extracellular solute-binding protein Thewi_0223 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0224 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0227 PF01047 MarR family Thewi_0227 PF00480 ROK family Thewi_0228 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thewi_0230 PF01915 Glycosyl hydrolase family 3 C-terminal domain Thewi_0230 PF00933 Glycosyl hydrolase family 3 N terminal domain Thewi_0232 PF01979 Amidohydrolase family Thewi_0234 PF03169 OPT oligopeptide transporter protein Thewi_0236 PF00155 Aminotransferase class I and II Thewi_0237 PF01037 Lrp/AsnC ligand binding domain Thewi_0238 PF06782 Uncharacterised protein family (UPF0236) Thewi_0240 PF04023 FeoA domain Thewi_0240 PF07664 Ferrous iron transport protein B C terminus Thewi_0240 PF17910 FeoB cytosolic helical domain Thewi_0240 PF02421 Ferrous iron transport protein B Thewi_0240 PF07670 Nucleoside recognition Thewi_0243 PF00005 ABC transporter Thewi_0244 PF02361 Cobalt transport protein Thewi_0245 PF01891 Cobalt uptake substrate-specific transmembrane region Thewi_0245 PF13190 PDGLE domain Thewi_0246 PF01891 Cobalt uptake substrate-specific transmembrane region Thewi_0246 PF13190 PDGLE domain Thewi_0247 PF08753 NikR C terminal nickel binding domain Thewi_0247 PF01402 Ribbon-helix-helix protein, copG family Thewi_0248 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Thewi_0250 PF00588 SpoU rRNA Methylase family Thewi_0251 PF11799 impB/mucB/samB family C-terminal domain Thewi_0251 PF11798 IMS family HHH motif Thewi_0251 PF00817 impB/mucB/samB family Thewi_0252 PF01554 MatE Thewi_0253 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thewi_0254 PF00005 ABC transporter Thewi_0255 PF02687 FtsX-like permease family Thewi_0255 PF00005 ABC transporter Thewi_0255 PF12704 MacB-like periplasmic core domain Thewi_0257 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thewi_0261 PF12705 PD-(D/E)XK nuclease superfamily Thewi_0262 PF12705 PD-(D/E)XK nuclease superfamily Thewi_0262 PF00580 UvrD/REP helicase N-terminal domain Thewi_0262 PF13361 UvrD-like helicase C-terminal domain Thewi_0265 PF01212 Beta-eliminating lyase Thewi_0266 PF10417 C-terminal domain of 1-Cys peroxiredoxin Thewi_0266 PF00578 AhpC/TSA family Thewi_0269 PF06782 Uncharacterised protein family (UPF0236) Thewi_0271 PF18085 Maltokinase N-terminal cap domain Thewi_0271 PF01636 Phosphotransferase enzyme family Thewi_0272 PF13439 Glycosyltransferase Family 4 Thewi_0272 PF00534 Glycosyl transferases group 1 Thewi_0273 PF09335 SNARE associated Golgi protein Thewi_0275 PF05949 Bacterial protein of unknown function (DUF881) Thewi_0277 PF00056 lactate/malate dehydrogenase, NAD binding domain Thewi_0277 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Thewi_0279 PF01593 Flavin containing amine oxidoreductase Thewi_0282 PF03030 Inorganic H+ pyrophosphatase Thewi_0283 PF01950 Fructose-1,6-bisphosphatase Thewi_0285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0285 PF06580 Histidine kinase Thewi_0285 PF02743 Cache domain Thewi_0285 PF00672 HAMP domain Thewi_0286 PF00072 Response regulator receiver domain Thewi_0286 PF00196 Bacterial regulatory proteins, luxR family Thewi_0287 PF13407 Periplasmic binding protein domain Thewi_0288 PF13407 Periplasmic binding protein domain Thewi_0289 PF00005 ABC transporter Thewi_0290 PF02653 Branched-chain amino acid transport system / permease component Thewi_0292 PF02347 Glycine cleavage system P-protein Thewi_0293 PF01597 Glycine cleavage H-protein Thewi_0294 PF01571 Aminomethyltransferase folate-binding domain Thewi_0294 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thewi_0295 PF03099 Biotin/lipoate A/B protein ligase family Thewi_0295 PF10437 Bacterial lipoate protein ligase C-terminus Thewi_0296 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_0296 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thewi_0298 PF00155 Aminotransferase class I and II Thewi_0299 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_0300 PF13580 SIS domain Thewi_0302 PF03611 PTS system sugar-specific permease component Thewi_0303 PF00456 Transketolase, thiamine diphosphate binding domain Thewi_0304 PF02779 Transketolase, pyrimidine binding domain Thewi_0304 PF02780 Transketolase, C-terminal domain Thewi_0305 PF01116 Fructose-bisphosphate aldolase class-II Thewi_0306 PF00365 Phosphofructokinase Thewi_0309 PF00106 short chain dehydrogenase Thewi_0310 PF13936 Helix-turn-helix domain Thewi_0310 PF04198 Putative sugar-binding domain Thewi_0312 PF03608 PTS system enzyme II sorbitol-specific factor Thewi_0313 PF03612 Sorbitol phosphotransferase enzyme II N-terminus Thewi_0313 PF07663 Sorbitol phosphotransferase enzyme II C-terminus Thewi_0316 PF03829 PTS system glucitol/sorbitol-specific IIA component Thewi_0317 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thewi_0320 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thewi_0323 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thewi_0323 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_0325 PF06782 Uncharacterised protein family (UPF0236) Thewi_0328 PF00465 Iron-containing alcohol dehydrogenase Thewi_0329 PF00912 Transglycosylase Thewi_0329 PF00905 Penicillin binding protein transpeptidase domain Thewi_0332 PF01022 Bacterial regulatory protein, arsR family Thewi_0342 PF00440 Bacterial regulatory proteins, tetR family Thewi_0345 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thewi_0346 PF01545 Cation efflux family Thewi_0348 PF00005 ABC transporter Thewi_0349 PF03649 Uncharacterised protein family (UPF0014) Thewi_0350 PF09334 tRNA synthetases class I (M) Thewi_0350 PF13603 Leucyl-tRNA synthetase, Domain 2 Thewi_0350 PF08264 Anticodon-binding domain of tRNA Thewi_0350 PF00133 tRNA synthetases class I (I, L, M and V) Thewi_0351 PF03591 AzlC protein Thewi_0353 PF00294 pfkB family carbohydrate kinase Thewi_0354 PF04227 Indigoidine synthase A like protein Thewi_0357 PF01384 Phosphate transporter family Thewi_0361 PF00158 Sigma-54 interaction domain Thewi_0361 PF00874 PRD domain Thewi_0361 PF03610 PTS system fructose IIA component Thewi_0364 PF02378 Phosphotransferase system, EIIC Thewi_0366 PF02056 Family 4 glycosyl hydrolase Thewi_0366 PF11975 Family 4 glycosyl hydrolase C-terminal domain Thewi_0369 PF01380 SIS domain Thewi_0370 PF00701 Dihydrodipicolinate synthetase family Thewi_0371 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_0371 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_0372 PF02615 Malate/L-lactate dehydrogenase Thewi_0373 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thewi_0374 PF13247 4Fe-4S dicluster domain Thewi_0374 PF12800 4Fe-4S binding domain Thewi_0375 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thewi_0375 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Thewi_0376 PF00665 Integrase core domain Thewi_0376 PF02796 Helix-turn-helix domain of resolvase Thewi_0377 PF01695 IstB-like ATP binding protein Thewi_0379 PF00899 ThiF family Thewi_0382 PF12849 PBP superfamily domain Thewi_0383 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0384 PF00005 ABC transporter Thewi_0385 PF00994 Probable molybdopterin binding domain Thewi_0386 PF00994 Probable molybdopterin binding domain Thewi_0386 PF03453 MoeA N-terminal region (domain I and II) Thewi_0386 PF03454 MoeA C-terminal region (domain IV) Thewi_0387 PF12728 Helix-turn-helix domain Thewi_0387 PF12727 PBP superfamily domain Thewi_0388 PF06463 Molybdenum Cofactor Synthesis C Thewi_0388 PF04055 Radical SAM superfamily Thewi_0389 PF01967 MoaC family Thewi_0393 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_0393 PF02378 Phosphotransferase system, EIIC Thewi_0394 PF08279 HTH domain Thewi_0394 PF05043 Mga helix-turn-helix domain Thewi_0394 PF00874 PRD domain Thewi_0394 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_0395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_0396 PF08125 Mannitol dehydrogenase C-terminal domain Thewi_0396 PF01232 Mannitol dehydrogenase Rossmann domain Thewi_0397 PF00149 Calcineurin-like phosphoesterase Thewi_0397 PF02872 5'-nucleotidase, C-terminal domain Thewi_0398 PF01207 Dihydrouridine synthase (Dus) Thewi_0399 PF01925 Sulfite exporter TauE/SafE Thewi_0401 PF00356 Bacterial regulatory proteins, lacI family Thewi_0402 PF00356 Bacterial regulatory proteins, lacI family Thewi_0404 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0405 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0405 PF12911 N-terminal TM domain of oligopeptide transport permease C Thewi_0406 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thewi_0406 PF00005 ABC transporter Thewi_0407 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thewi_0407 PF00005 ABC transporter Thewi_0408 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Thewi_0408 PF16355 Domain of unknown function (DUF4982) Thewi_0408 PF00703 Glycosyl hydrolases family 2 Thewi_0408 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Thewi_0408 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thewi_0410 PF00950 ABC 3 transport family Thewi_0411 PF00005 ABC transporter Thewi_0412 PF01297 Zinc-uptake complex component A periplasmic Thewi_0413 PF01475 Ferric uptake regulator family Thewi_0414 PF17863 AAA lid domain Thewi_0414 PF07726 ATPase family associated with various cellular activities (AAA) Thewi_0417 PF04011 LemA family Thewi_0419 PF17179 4Fe-4S dicluster domain Thewi_0420 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thewi_0420 PF00175 Oxidoreductase NAD-binding domain Thewi_0421 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thewi_0421 PF13187 4Fe-4S dicluster domain Thewi_0421 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thewi_0422 PF01026 TatD related DNase Thewi_0424 PF00266 Aminotransferase class-V Thewi_0425 PF01592 NifU-like N terminal domain Thewi_0428 PF02926 THUMP domain Thewi_0428 PF01170 Putative RNA methylase family UPF0020 Thewi_0429 PF01497 Periplasmic binding protein Thewi_0430 PF01032 FecCD transport family Thewi_0431 PF00005 ABC transporter Thewi_0432 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thewi_0432 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thewi_0433 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thewi_0433 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thewi_0437 PF00155 Aminotransferase class I and II Thewi_0438 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Thewi_0439 PF02654 Cobalamin-5-phosphate synthase Thewi_0445 PF01488 Shikimate / quinate 5-dehydrogenase Thewi_0445 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Thewi_0445 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Thewi_0446 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Thewi_0446 PF03900 Porphobilinogen deaminase, C-terminal domain Thewi_0448 PF00490 Delta-aminolevulinic acid dehydratase Thewi_0449 PF14824 Sirohaem biosynthesis protein central Thewi_0449 PF10414 Sirohaem synthase dimerisation region Thewi_0449 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thewi_0452 PF00202 Aminotransferase class-III Thewi_0458 PF16200 C-terminal region of band_7 Thewi_0458 PF01145 SPFH domain / Band 7 family Thewi_0462 PF00180 Isocitrate/isopropylmalate dehydrogenase Thewi_0464 PF00005 ABC transporter Thewi_0495 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thewi_0500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thewi_0500 PF10371 Domain of unknown function Thewi_0500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thewi_0500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thewi_0500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thewi_0502 PF01966 HD domain Thewi_0505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_0505 PF00672 HAMP domain Thewi_0505 PF17200 Single Cache domain 2 Thewi_0506 PF17391 Urocanase N-terminal domain Thewi_0506 PF17392 Urocanase C-terminal domain Thewi_0506 PF01175 Urocanase Rossmann-like domain Thewi_0507 PF02971 Formiminotransferase domain Thewi_0507 PF07837 Formiminotransferase domain, N-terminal subdomain Thewi_0508 PF01979 Amidohydrolase family Thewi_0512 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0513 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0514 PF01547 Bacterial extracellular solute-binding protein Thewi_0515 PF02743 Cache domain Thewi_0515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0515 PF06580 Histidine kinase Thewi_0515 PF00672 HAMP domain Thewi_0516 PF12833 Helix-turn-helix domain Thewi_0516 PF00072 Response regulator receiver domain Thewi_0517 PF04961 Formiminotransferase-cyclodeaminase Thewi_0518 PF02608 ABC transporter substrate-binding protein PnrA-like Thewi_0522 PF07702 UTRA domain Thewi_0522 PF00392 Bacterial regulatory proteins, gntR family Thewi_0523 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thewi_0524 PF01676 Metalloenzyme superfamily Thewi_0525 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Thewi_0525 PF00591 Glycosyl transferase family, a/b domain Thewi_0525 PF02885 Glycosyl transferase family, helical bundle domain Thewi_0528 PF00367 phosphotransferase system, EIIB Thewi_0528 PF02378 Phosphotransferase system, EIIC Thewi_0528 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thewi_0529 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thewi_0530 PF00874 PRD domain Thewi_0530 PF03123 CAT RNA binding domain Thewi_0531 PF00682 HMGL-like Thewi_0532 PF00330 Aconitase family (aconitate hydratase) Thewi_0537 PF01968 Hydantoinase/oxoprolinase Thewi_0537 PF05378 Hydantoinase/oxoprolinase N-terminal region Thewi_0540 PF02261 Aspartate decarboxylase Thewi_0541 PF02569 Pantoate-beta-alanine ligase Thewi_0542 PF02548 Ketopantoate hydroxymethyltransferase Thewi_0544 PF08704 tRNA methyltransferase complex GCD14 subunit Thewi_0546 PF04239 Protein of unknown function (DUF421) Thewi_0549 PF00356 Bacterial regulatory proteins, lacI family Thewi_0550 PF00486 Transcriptional regulatory protein, C terminal Thewi_0550 PF00072 Response regulator receiver domain Thewi_0551 PF16736 Single Cache-like Thewi_0551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0551 PF00512 His Kinase A (phospho-acceptor) domain Thewi_0551 PF00989 PAS fold Thewi_0556 PF02915 Rubrerythrin Thewi_0557 PF02772 S-adenosylmethionine synthetase, central domain Thewi_0557 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thewi_0557 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thewi_0558 PF14490 Helix-hairpin-helix containing domain Thewi_0558 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Thewi_0558 PF13538 UvrD-like helicase C-terminal domain Thewi_0559 PF00156 Phosphoribosyl transferase domain Thewi_0563 PF00460 Flagella basal body rod protein Thewi_0563 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thewi_0564 PF00669 Bacterial flagellin N-terminal helical region Thewi_0564 PF00700 Bacterial flagellin C-terminal helical region Thewi_0566 PF02623 FliW protein Thewi_0567 PF02599 Global regulator protein family Thewi_0568 PF00669 Bacterial flagellin N-terminal helical region Thewi_0568 PF00700 Bacterial flagellin C-terminal helical region Thewi_0572 PF00665 Integrase core domain Thewi_0572 PF02796 Helix-turn-helix domain of resolvase Thewi_0576 PF01695 IstB-like ATP binding protein Thewi_0578 PF00535 Glycosyl transferase family 2 Thewi_0578 PF13181 Tetratricopeptide repeat Thewi_0579 PF13537 Glutamine amidotransferase domain Thewi_0579 PF00733 Asparagine synthase Thewi_0582 PF07196 Flagellin hook IN motif Thewi_0582 PF02465 Flagellar hook-associated protein 2 N-terminus Thewi_0582 PF07195 Flagellar hook-associated protein 2 C-terminus Thewi_0585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_0585 PF00672 HAMP domain Thewi_0585 PF02743 Cache domain Thewi_0587 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thewi_0588 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0589 PF00005 ABC transporter Thewi_0590 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Thewi_0590 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thewi_0592 PF00072 Response regulator receiver domain Thewi_0594 PF08279 HTH domain Thewi_0594 PF02829 3H domain Thewi_0596 PF07517 SecA DEAD-like domain Thewi_0596 PF07516 SecA Wing and Scaffold domain Thewi_0596 PF01043 SecA preprotein cross-linking domain Thewi_0596 PF02810 SEC-C motif Thewi_0600 PF09335 SNARE associated Golgi protein Thewi_0601 PF01979 Amidohydrolase family Thewi_0603 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thewi_0603 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thewi_0604 PF00696 Amino acid kinase family Thewi_0605 PF12822 ECF transporter, substrate-specific component Thewi_0606 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thewi_0607 PF00814 Glycoprotease family Thewi_0609 PF00814 Glycoprotease family Thewi_0610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_0610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_0612 PF01618 MotA/TolQ/ExbB proton channel family Thewi_0613 PF00691 OmpA family Thewi_0613 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thewi_0614 PF06971 Putative DNA-binding protein N-terminus Thewi_0614 PF02629 CoA binding domain Thewi_0615 PF00378 Enoyl-CoA hydratase/isomerase Thewi_0616 PF02770 Acyl-CoA dehydrogenase, middle domain Thewi_0616 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Thewi_0616 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Thewi_0617 PF01012 Electron transfer flavoprotein domain Thewi_0618 PF01012 Electron transfer flavoprotein domain Thewi_0618 PF00766 Electron transfer flavoprotein FAD-binding domain Thewi_0620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Thewi_0620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thewi_0621 PF01467 Cytidylyltransferase-like Thewi_0622 PF02803 Thiolase, C-terminal domain Thewi_0622 PF00108 Thiolase, N-terminal domain Thewi_0623 PF02954 Bacterial regulatory protein, Fis family Thewi_0623 PF13426 PAS domain Thewi_0623 PF00158 Sigma-54 interaction domain Thewi_0624 PF01575 MaoC like domain Thewi_0626 PF02653 Branched-chain amino acid transport system / permease component Thewi_0626 PF11862 Domain of unknown function (DUF3382) Thewi_0627 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thewi_0627 PF00005 ABC transporter Thewi_0628 PF00005 ABC transporter Thewi_0629 PF13458 Periplasmic binding protein Thewi_0630 PF00561 alpha/beta hydrolase fold Thewi_0631 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thewi_0631 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thewi_0632 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Thewi_0632 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Thewi_0634 PF00561 alpha/beta hydrolase fold Thewi_0635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thewi_0635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thewi_0636 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_0637 PF00871 Acetokinase family Thewi_0639 PF04397 LytTr DNA-binding domain Thewi_0639 PF00072 Response regulator receiver domain Thewi_0640 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Thewi_0640 PF17203 Single cache domain 3 Thewi_0640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0644 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thewi_0644 PF00175 Oxidoreductase NAD-binding domain Thewi_0645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thewi_0645 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_0646 PF02545 Maf-like protein Thewi_0647 PF04474 Protein of unknown function (DUF554) Thewi_0649 PF00082 Subtilase family Thewi_0663 PF00166 Chaperonin 10 Kd subunit Thewi_0664 PF00118 TCP-1/cpn60 chaperonin family Thewi_0665 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thewi_0666 PF00571 CBS domain Thewi_0666 PF00478 IMP dehydrogenase / GMP reductase domain Thewi_0667 PF00117 Glutamine amidotransferase class-I Thewi_0667 PF02540 NAD synthase Thewi_0667 PF00958 GMP synthase C terminal domain Thewi_0668 PF00860 Permease family Thewi_0669 PF00731 AIR carboxylase Thewi_0670 PF01259 SAICAR synthetase Thewi_0673 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thewi_0673 PF00586 AIR synthase related protein, N-terminal domain Thewi_0673 PF02769 AIR synthase related protein, C-terminal domain Thewi_0674 PF00156 Phosphoribosyl transferase domain Thewi_0675 PF02769 AIR synthase related protein, C-terminal domain Thewi_0675 PF00586 AIR synthase related protein, N-terminal domain Thewi_0676 PF00551 Formyl transferase Thewi_0677 PF01808 AICARFT/IMPCHase bienzyme Thewi_0677 PF02142 MGS-like domain Thewi_0678 PF02844 Phosphoribosylglycinamide synthetase, N domain Thewi_0678 PF02843 Phosphoribosylglycinamide synthetase, C domain Thewi_0678 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thewi_0679 PF08241 Methyltransferase domain Thewi_0680 PF01177 Asp/Glu/Hydantoin racemase Thewi_0681 PF01546 Peptidase family M20/M25/M40 Thewi_0681 PF07687 Peptidase dimerisation domain Thewi_0682 PF14667 Polysaccharide biosynthesis C-terminal domain Thewi_0682 PF01943 Polysaccharide biosynthesis protein Thewi_0684 PF00874 PRD domain Thewi_0684 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_0684 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_0684 PF08279 HTH domain Thewi_0684 PF05043 Mga helix-turn-helix domain Thewi_0686 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_0687 PF02378 Phosphotransferase system, EIIC Thewi_0688 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thewi_0689 PF01371 Trp repressor protein Thewi_0690 PF13361 UvrD-like helicase C-terminal domain Thewi_0690 PF00580 UvrD/REP helicase N-terminal domain Thewi_0691 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thewi_0691 PF03120 NAD-dependent DNA ligase OB-fold domain Thewi_0691 PF12826 Helix-hairpin-helix motif Thewi_0691 PF01653 NAD-dependent DNA ligase adenylation domain Thewi_0691 PF00533 BRCA1 C Terminus (BRCT) domain Thewi_0692 PF02686 Glu-tRNAGln amidotransferase C subunit Thewi_0693 PF01425 Amidase Thewi_0694 PF02637 GatB domain Thewi_0694 PF02934 GatB/GatE catalytic domain Thewi_0696 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thewi_0698 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0699 PF12911 N-terminal TM domain of oligopeptide transport permease C Thewi_0699 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0700 PF00005 ABC transporter Thewi_0700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thewi_0704 PF01520 N-acetylmuramoyl-L-alanine amidase Thewi_0704 PF04122 Putative cell wall binding repeat 2 Thewi_0705 PF03725 3' exoribonuclease family, domain 2 Thewi_0705 PF01138 3' exoribonuclease family, domain 1 Thewi_0706 PF01725 Ham1 family Thewi_0711 PF00990 Diguanylate cyclase, GGDEF domain Thewi_0711 PF00563 EAL domain Thewi_0711 PF03707 Bacterial signalling protein N terminal repeat Thewi_0713 PF18318 Glutamine synthetase C-terminal domain Thewi_0713 PF12437 Glutamine synthetase type III N terminal Thewi_0713 PF00120 Glutamine synthetase, catalytic domain Thewi_0714 PF00909 Ammonium Transporter Family Thewi_0715 PF00543 Nitrogen regulatory protein P-II Thewi_0716 PF00117 Glutamine amidotransferase class-I Thewi_0717 PF00310 Glutamine amidotransferases class-II Thewi_0718 PF13187 4Fe-4S dicluster domain Thewi_0718 PF01645 Conserved region in glutamate synthase Thewi_0719 PF00037 4Fe-4S binding domain Thewi_0719 PF13247 4Fe-4S dicluster domain Thewi_0723 PF00465 Iron-containing alcohol dehydrogenase Thewi_0724 PF08543 Phosphomethylpyrimidine kinase Thewi_0725 PF02581 Thiamine monophosphate synthase Thewi_0726 PF02110 Hydroxyethylthiazole kinase family Thewi_0729 PF01895 PhoU domain Thewi_0731 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thewi_0731 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thewi_0732 PF00005 ABC transporter Thewi_0733 PF00005 ABC transporter Thewi_0733 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thewi_0734 PF11862 Domain of unknown function (DUF3382) Thewi_0734 PF02653 Branched-chain amino acid transport system / permease component Thewi_0735 PF02653 Branched-chain amino acid transport system / permease component Thewi_0736 PF13458 Periplasmic binding protein Thewi_0738 PF06782 Uncharacterised protein family (UPF0236) Thewi_0739 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thewi_0739 PF05697 Bacterial trigger factor protein (TF) Thewi_0739 PF05698 Bacterial trigger factor protein (TF) C-terminus Thewi_0740 PF00574 Clp protease Thewi_0741 PF06689 ClpX C4-type zinc finger Thewi_0741 PF07724 AAA domain (Cdc48 subfamily) Thewi_0741 PF10431 C-terminal, D2-small domain, of ClpB protein Thewi_0742 PF00004 ATPase family associated with various cellular activities (AAA) Thewi_0742 PF05362 Lon protease (S16) C-terminal proteolytic domain Thewi_0742 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thewi_0743 PF01926 50S ribosome-binding GTPase Thewi_0745 PF00119 ATP synthase A chain Thewi_0746 PF00137 ATP synthase subunit C Thewi_0747 PF00430 ATP synthase B/B' CF(0) Thewi_0748 PF00213 ATP synthase delta (OSCP) subunit Thewi_0749 PF00306 ATP synthase alpha/beta chain, C terminal domain Thewi_0749 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thewi_0749 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thewi_0750 PF00231 ATP synthase Thewi_0751 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thewi_0751 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thewi_0752 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Thewi_0752 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Thewi_0754 PF02540 NAD synthase Thewi_0754 PF00795 Carbon-nitrogen hydrolase Thewi_0756 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0757 PF00005 ABC transporter Thewi_0765 PF02796 Helix-turn-helix domain of resolvase Thewi_0765 PF00665 Integrase core domain Thewi_0771 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thewi_0771 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thewi_0771 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thewi_0772 PF01370 NAD dependent epimerase/dehydratase family Thewi_0778 PF00535 Glycosyl transferase family 2 Thewi_0781 PF01610 Transposase Thewi_0781 PF13542 Helix-turn-helix domain of transposase family ISL3 Thewi_0781 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Thewi_0785 PF16363 GDP-mannose 4,6 dehydratase Thewi_0786 PF16363 GDP-mannose 4,6 dehydratase Thewi_0787 PF00483 Nucleotidyl transferase Thewi_0788 PF04321 RmlD substrate binding domain Thewi_0789 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Thewi_0790 PF00483 Nucleotidyl transferase Thewi_0790 PF01050 Mannose-6-phosphate isomerase Thewi_0806 PF00669 Bacterial flagellin N-terminal helical region Thewi_0806 PF00700 Bacterial flagellin C-terminal helical region Thewi_0806 PF00669 Bacterial flagellin N-terminal helical region Thewi_0806 PF00700 Bacterial flagellin C-terminal helical region Thewi_0819 PF08378 Nuclease-related domain Thewi_0828 PF04011 LemA family Thewi_0829 PF12850 Calcineurin-like phosphoesterase superfamily domain Thewi_0830 PF00248 Aldo/keto reductase family Thewi_0832 PF01139 tRNA-splicing ligase RtcB Thewi_0837 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thewi_0846 PF00753 Metallo-beta-lactamase superfamily Thewi_0846 PF10996 Beta-Casp domain Thewi_0846 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thewi_0847 PF01680 SOR/SNZ family Thewi_0848 PF01174 SNO glutamine amidotransferase family Thewi_0849 PF03061 Thioesterase superfamily Thewi_0850 PF05853 beta-keto acid cleavage enzyme Thewi_0852 PF12544 Lysine-2,3-aminomutase Thewi_0852 PF04055 Radical SAM superfamily Thewi_0854 PF00488 MutS domain V Thewi_0854 PF01713 Smr domain Thewi_0855 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Thewi_0856 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Thewi_0856 PF02310 B12 binding domain Thewi_0857 PF13520 Amino acid permease Thewi_0858 PF02357 Transcription termination factor nusG Thewi_0858 PF00467 KOW motif Thewi_0859 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thewi_0859 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thewi_0859 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thewi_0859 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thewi_0860 PF00483 Nucleotidyl transferase Thewi_0861 PF02706 Chain length determinant protein Thewi_0861 PF13807 G-rich domain on putative tyrosine kinase Thewi_0862 PF13614 AAA domain Thewi_0864 PF03816 Cell envelope-related transcriptional attenuator domain Thewi_0867 PF00690 Cation transporter/ATPase, N-terminus Thewi_0867 PF00689 Cation transporting ATPase, C-terminus Thewi_0868 PF00334 Nucleoside diphosphate kinase Thewi_0869 PF07690 Major Facilitator Superfamily Thewi_0870 PF10997 Alternate to MurJ Thewi_0872 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thewi_0872 PF18267 Rubredoxin NAD+ reductase C-terminal domain Thewi_0872 PF04324 BFD-like [2Fe-2S] binding domain Thewi_0872 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thewi_0872 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_0873 PF01569 PAP2 superfamily Thewi_0876 PF01066 CDP-alcohol phosphatidyltransferase Thewi_0877 PF00672 HAMP domain Thewi_0877 PF02743 Cache domain Thewi_0877 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_0879 PF00731 AIR carboxylase Thewi_0882 PF00072 Response regulator receiver domain Thewi_0882 PF00486 Transcriptional regulatory protein, C terminal Thewi_0883 PF10925 Protein of unknown function (DUF2680) Thewi_0885 PF02632 BioY family Thewi_0887 PF10458 Valyl tRNA synthetase tRNA binding arm Thewi_0887 PF08264 Anticodon-binding domain of tRNA Thewi_0887 PF00133 tRNA synthetases class I (I, L, M and V) Thewi_0889 PF08245 Mur ligase middle domain Thewi_0889 PF02875 Mur ligase family, glutamate ligase domain Thewi_0894 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thewi_0895 PF08331 Domain of unknown function (DUF1730) Thewi_0896 PF00356 Bacterial regulatory proteins, lacI family Thewi_0897 PF03633 Glycosyl hydrolase family 65, C-terminal domain Thewi_0897 PF03636 Glycosyl hydrolase family 65, N-terminal domain Thewi_0897 PF03632 Glycosyl hydrolase family 65 central catalytic domain Thewi_0898 PF01547 Bacterial extracellular solute-binding protein Thewi_0899 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0900 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0901 PF13419 Haloacid dehalogenase-like hydrolase Thewi_0902 PF13936 Helix-turn-helix domain Thewi_0903 PF00356 Bacterial regulatory proteins, lacI family Thewi_0904 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0905 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_0907 PF03632 Glycosyl hydrolase family 65 central catalytic domain Thewi_0907 PF03636 Glycosyl hydrolase family 65, N-terminal domain Thewi_0907 PF03633 Glycosyl hydrolase family 65, C-terminal domain Thewi_0908 PF00082 Subtilase family Thewi_0909 PF00158 Sigma-54 interaction domain Thewi_0909 PF03610 PTS system fructose IIA component Thewi_0909 PF00874 PRD domain Thewi_0910 PF01471 Putative peptidoglycan binding domain Thewi_0910 PF07486 Cell Wall Hydrolase Thewi_0913 PF12557 Cob(I)alamin adenosyltransferase N terminal Thewi_0913 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Thewi_0914 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Thewi_0914 PF00132 Bacterial transferase hexapeptide (six repeats) Thewi_0914 PF14602 Hexapeptide repeat of succinyl-transferase Thewi_0915 PF01113 Dihydrodipicolinate reductase, N-terminus Thewi_0915 PF05173 Dihydrodipicolinate reductase, C-terminus Thewi_0916 PF00701 Dihydrodipicolinate synthetase family Thewi_0917 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thewi_0917 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thewi_0919 PF00005 ABC transporter Thewi_0919 PF00664 ABC transporter transmembrane region Thewi_0920 PF00005 ABC transporter Thewi_0920 PF00664 ABC transporter transmembrane region Thewi_0922 PF03951 Glutamine synthetase, beta-Grasp domain Thewi_0922 PF00120 Glutamine synthetase, catalytic domain Thewi_0923 PF00072 Response regulator receiver domain Thewi_0924 PF01979 Amidohydrolase family Thewi_0928 PF01551 Peptidase family M23 Thewi_0928 PF01476 LysM domain Thewi_0928 PF08525 Opacity-associated protein A N-terminal motif Thewi_0932 PF00221 Aromatic amino acid lyase Thewi_0935 PF00005 ABC transporter Thewi_0937 PF01343 Peptidase family S49 Thewi_0942 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Thewi_0942 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Thewi_0943 PF04260 Protein of unknown function (DUF436) Thewi_0949 PF01476 LysM domain Thewi_0949 PF00704 Glycosyl hydrolases family 18 Thewi_0951 PF04024 PspC domain Thewi_0952 PF01522 Polysaccharide deacetylase Thewi_0952 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Thewi_0956 PF02554 Carbon starvation protein CstA Thewi_0956 PF13722 5TM C-terminal transporter carbon starvation CstA Thewi_0957 PF00072 Response regulator receiver domain Thewi_0957 PF04397 LytTr DNA-binding domain Thewi_0958 PF06580 Histidine kinase Thewi_0958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0958 PF13492 GAF domain Thewi_0958 PF07694 5TMR of 5TMR-LYT Thewi_0959 PF08281 Sigma-70, region 4 Thewi_0959 PF04542 Sigma-70 region 2 Thewi_0962 PF01121 Dephospho-CoA kinase Thewi_0963 PF01464 Transglycosylase SLT domain Thewi_0966 PF00877 NlpC/P60 family Thewi_0969 PF01464 Transglycosylase SLT domain Thewi_0973 PF04060 Putative Fe-S cluster Thewi_0977 PF00512 His Kinase A (phospho-acceptor) domain Thewi_0977 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thewi_0977 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_0979 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thewi_0979 PF00037 4Fe-4S binding domain Thewi_0979 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thewi_0980 PF00037 4Fe-4S binding domain Thewi_0980 PF02256 Iron hydrogenase small subunit Thewi_0980 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thewi_0980 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thewi_0982 PF02545 Maf-like protein Thewi_0983 PF04002 RadC-like JAB domain Thewi_0988 PF03775 Septum formation inhibitor MinC, C-terminal domain Thewi_0989 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thewi_0990 PF03776 Septum formation topological specificity factor MinE Thewi_0991 PF01098 Cell cycle protein Thewi_0992 PF02142 MGS-like domain Thewi_0993 PF01551 Peptidase family M23 Thewi_0993 PF01476 LysM domain Thewi_0993 PF08525 Opacity-associated protein A N-terminal motif Thewi_0994 PF02163 Peptidase family M50 Thewi_0994 PF00571 CBS domain Thewi_0997 PF10150 Ribonuclease E/G family Thewi_0997 PF00575 S1 RNA binding domain Thewi_0998 PF14489 QueF-like protein Thewi_0999 PF06177 QueT transporter Thewi_1002 PF00829 Ribosomal prokaryotic L21 protein Thewi_1004 PF01016 Ribosomal L27 protein Thewi_1007 PF01467 Cytidylyltransferase-like Thewi_1008 PF01966 HD domain Thewi_1009 PF03816 Cell envelope-related transcriptional attenuator domain Thewi_1012 PF02558 Ketopantoate reductase PanE/ApbA Thewi_1012 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Thewi_1014 PF00733 Asparagine synthase Thewi_1014 PF13537 Glutamine amidotransferase domain Thewi_1015 PF00768 D-alanyl-D-alanine carboxypeptidase Thewi_1015 PF07943 Penicillin-binding protein 5, C-terminal domain Thewi_1016 PF10531 SLBB domain Thewi_1018 PF04608 Phosphatidylglycerophosphatase A Thewi_1019 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thewi_1021 PF12838 4Fe-4S dicluster domain Thewi_1022 PF01063 Amino-transferase class IV Thewi_1026 PF07155 ECF-type riboflavin transporter, S component Thewi_1028 PF13419 Haloacid dehalogenase-like hydrolase Thewi_1029 PF00753 Metallo-beta-lactamase superfamily Thewi_1029 PF12706 Beta-lactamase superfamily domain Thewi_1030 PF00753 Metallo-beta-lactamase superfamily Thewi_1030 PF13567 Domain of unknown function (DUF4131) Thewi_1030 PF03772 Competence protein Thewi_1032 PF01649 Ribosomal protein S20 Thewi_1034 PF03418 Germination protease Thewi_1037 PF00534 Glycosyl transferases group 1 Thewi_1037 PF13477 Glycosyl transferase 4-like Thewi_1039 PF14492 Elongation Factor G, domain II Thewi_1039 PF06421 GTP-binding protein LepA C-terminus Thewi_1039 PF03144 Elongation factor Tu domain 2 Thewi_1039 PF00679 Elongation factor G C-terminus Thewi_1039 PF00009 Elongation factor Tu GTP binding domain Thewi_1040 PF04055 Radical SAM superfamily Thewi_1040 PF06969 HemN C-terminal domain Thewi_1041 PF01628 HrcA protein C terminal domain Thewi_1042 PF01025 GrpE Thewi_1043 PF00012 Hsp70 protein Thewi_1044 PF01556 DnaJ C terminal domain Thewi_1044 PF00684 DnaJ central domain Thewi_1044 PF00226 DnaJ domain Thewi_1047 PF00919 Uncharacterized protein family UPF0004 Thewi_1047 PF01938 TRAM domain Thewi_1047 PF04055 Radical SAM superfamily Thewi_1048 PF01230 HIT domain Thewi_1049 PF01165 Ribosomal protein S21 Thewi_1051 PF00710 Asparaginase, N-terminal Thewi_1051 PF17763 Glutaminase/Asparaginase C-terminal domain Thewi_1052 PF07873 YabP family Thewi_1053 PF06898 Putative stage IV sporulation protein YqfD Thewi_1054 PF02562 PhoH-like protein Thewi_1055 PF07697 7TM-HD extracellular Thewi_1055 PF01966 HD domain Thewi_1055 PF07698 7TM receptor with intracellular HD hydrolase Thewi_1056 PF02130 Uncharacterized protein family UPF0054 Thewi_1057 PF01219 Prokaryotic diacylglycerol kinase Thewi_1059 PF07650 KH domain Thewi_1059 PF01926 50S ribosome-binding GTPase Thewi_1060 PF01791 DeoC/LacD family aldolase Thewi_1061 PF02565 Recombination protein O C terminal Thewi_1061 PF11967 Recombination protein O N terminal Thewi_1063 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thewi_1063 PF03129 Anticodon binding domain Thewi_1064 PF08279 HTH domain Thewi_1064 PF00571 CBS domain Thewi_1065 PF03618 Kinase/pyrophosphorylase Thewi_1066 PF00391 PEP-utilising enzyme, mobile domain Thewi_1066 PF02896 PEP-utilising enzyme, TIM barrel domain Thewi_1066 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thewi_1068 PF17876 Cold shock domain Thewi_1068 PF08206 Ribonuclease B OB domain Thewi_1068 PF00575 S1 RNA binding domain Thewi_1068 PF00773 RNB domain Thewi_1069 PF01668 SmpB protein Thewi_1072 PF01470 Pyroglutamyl peptidase Thewi_1075 PF01965 DJ-1/PfpI family Thewi_1076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Thewi_1077 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_1077 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thewi_1078 PF08386 TAP-like protein Thewi_1078 PF00561 alpha/beta hydrolase fold Thewi_1086 PF03009 Glycerophosphoryl diester phosphodiesterase family Thewi_1088 PF01661 Macro domain Thewi_1089 PF02673 Bacitracin resistance protein BacA Thewi_1092 PF14098 Small, acid-soluble spore protein I Thewi_1095 PF00258 Flavodoxin Thewi_1095 PF00753 Metallo-beta-lactamase superfamily Thewi_1096 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thewi_1098 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thewi_1098 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thewi_1099 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thewi_1099 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thewi_1100 PF04199 Putative cyclase Thewi_1102 PF03315 Serine dehydratase beta chain Thewi_1103 PF03313 Serine dehydratase alpha chain Thewi_1104 PF01432 Peptidase family M3 Thewi_1104 PF08439 Oligopeptidase F Thewi_1105 PF01761 3-dehydroquinate synthase Thewi_1106 PF00800 Prephenate dehydratase Thewi_1106 PF01817 Chorismate mutase type II Thewi_1106 PF01842 ACT domain Thewi_1107 PF00793 DAHP synthetase I family Thewi_1107 PF18152 DAHP synthase ferredoxin-like domain Thewi_1108 PF01842 ACT domain Thewi_1108 PF02153 Prephenate dehydrogenase Thewi_1109 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thewi_1110 PF00486 Transcriptional regulatory protein, C terminal Thewi_1110 PF00072 Response regulator receiver domain Thewi_1111 PF00672 HAMP domain Thewi_1111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_1111 PF00512 His Kinase A (phospho-acceptor) domain Thewi_1113 PF01471 Putative peptidoglycan binding domain Thewi_1113 PF07486 Cell Wall Hydrolase Thewi_1114 PF01169 Uncharacterized protein family UPF0016 Thewi_1117 PF00072 Response regulator receiver domain Thewi_1117 PF00486 Transcriptional regulatory protein, C terminal Thewi_1118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_1118 PF00672 HAMP domain Thewi_1118 PF00512 His Kinase A (phospho-acceptor) domain Thewi_1120 PF02633 Creatinine amidohydrolase Thewi_1123 PF00480 ROK family Thewi_1124 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Thewi_1127 PF00005 ABC transporter Thewi_1129 PF02683 Cytochrome C biogenesis protein transmembrane region Thewi_1130 PF00578 AhpC/TSA family Thewi_1131 PF00085 Thioredoxin Thewi_1132 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thewi_1132 PF01276 Orn/Lys/Arg decarboxylase, major domain Thewi_1137 PF02796 Helix-turn-helix domain of resolvase Thewi_1137 PF00665 Integrase core domain Thewi_1142 PF01926 50S ribosome-binding GTPase Thewi_1142 PF13167 GTP-binding GTPase N-terminal Thewi_1142 PF16360 GTP-binding GTPase Middle Region Thewi_1145 PF01205 Uncharacterized protein family UPF0029 Thewi_1145 PF09186 Domain of unknown function (DUF1949) Thewi_1150 PF00291 Pyridoxal-phosphate dependent enzyme Thewi_1151 PF01709 Transcriptional regulator Thewi_1152 PF01584 CheW-like domain Thewi_1154 PF02075 Crossover junction endodeoxyribonuclease RuvC Thewi_1155 PF07499 RuvA, C-terminal domain Thewi_1155 PF01330 RuvA N terminal domain Thewi_1156 PF05491 RuvB C-terminal winged helix domain Thewi_1156 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thewi_1156 PF17864 RuvB AAA lid domain Thewi_1157 PF11146 Protein of unknown function (DUF2905) Thewi_1158 PF08486 Stage II sporulation protein Thewi_1158 PF04122 Putative cell wall binding repeat 2 Thewi_1159 PF02547 Queuosine biosynthesis protein Thewi_1160 PF01702 Queuine tRNA-ribosyltransferase Thewi_1165 PF00132 Bacterial transferase hexapeptide (six repeats) Thewi_1166 PF07549 SecD/SecF GG Motif Thewi_1166 PF02355 Protein export membrane protein Thewi_1167 PF07549 SecD/SecF GG Motif Thewi_1167 PF02355 Protein export membrane protein Thewi_1168 PF03109 ABC1 family Thewi_1169 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Thewi_1169 PF01368 DHH family Thewi_1169 PF17768 RecJ OB domain Thewi_1169 PF02272 DHHA1 domain Thewi_1170 PF00156 Phosphoribosyl transferase domain Thewi_1171 PF02824 TGS domain Thewi_1171 PF04607 Region found in RelA / SpoT proteins Thewi_1171 PF13291 ACT domain Thewi_1172 PF02580 D-Tyr-tRNA(Tyr) deacylase Thewi_1173 PF00753 Metallo-beta-lactamase superfamily Thewi_1174 PF12704 MacB-like periplasmic core domain Thewi_1174 PF02687 FtsX-like permease family Thewi_1175 PF00005 ABC transporter Thewi_1177 PF01047 MarR family Thewi_1179 PF03129 Anticodon binding domain Thewi_1179 PF13393 Histidyl-tRNA synthetase Thewi_1180 PF02938 GAD domain Thewi_1180 PF00152 tRNA synthetases class II (D, K and N) Thewi_1180 PF01336 OB-fold nucleic acid binding domain Thewi_1181 PF00899 ThiF family Thewi_1182 PF02583 Metal-sensitive transcriptional repressor Thewi_1183 PF00085 Thioredoxin Thewi_1186 PF00291 Pyridoxal-phosphate dependent enzyme Thewi_1187 PF16552 D-ornithine 4,5-aminomutase alpha-subunit Thewi_1188 PF02310 B12 binding domain Thewi_1188 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Thewi_1188 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Thewi_1189 PF13941 MutL protein Thewi_1192 PF02082 Transcriptional regulator Thewi_1195 PF01594 AI-2E family transporter Thewi_1196 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thewi_1196 PF02272 DHHA1 domain Thewi_1196 PF01411 tRNA synthetases class II (A) Thewi_1197 PF06135 IreB regulatory phosphoprotein Thewi_1198 PF03652 Holliday junction resolvase Thewi_1199 PF06949 Protein of unknown function (DUF1292) Thewi_1200 PF01475 Ferric uptake regulator family Thewi_1201 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thewi_1201 PF17770 Ribonuclease J C-terminal domain Thewi_1201 PF00753 Metallo-beta-lactamase superfamily Thewi_1202 PF06133 Control of competence regulator ComK, YlbF/YmcA Thewi_1203 PF06177 QueT transporter Thewi_1204 PF02618 YceG-like family Thewi_1207 PF00905 Penicillin binding protein transpeptidase domain Thewi_1207 PF03717 Penicillin-binding Protein dimerisation domain Thewi_1208 PF04542 Sigma-70 region 2 Thewi_1208 PF04545 Sigma-70, region 4 Thewi_1210 PF01488 Shikimate / quinate 5-dehydrogenase Thewi_1210 PF08501 Shikimate dehydrogenase substrate binding domain Thewi_1211 PF00437 Type II/IV secretion system protein Thewi_1212 PF00437 Type II/IV secretion system protein Thewi_1214 PF07963 Prokaryotic N-terminal methylation motif Thewi_1214 PF14245 Type IV pilin PilA Thewi_1215 PF01478 Type IV leader peptidase family Thewi_1215 PF06750 Bacterial Peptidase A24 N-terminal domain Thewi_1224 PF01202 Shikimate kinase Thewi_1226 PF00696 Amino acid kinase family Thewi_1226 PF01472 PUA domain Thewi_1227 PF00171 Aldehyde dehydrogenase family Thewi_1228 PF01220 Dehydroquinase class II Thewi_1229 PF01321 Creatinase/Prolidase N-terminal domain Thewi_1229 PF00557 Metallopeptidase family M24 Thewi_1230 PF01132 Elongation factor P (EF-P) OB domain Thewi_1230 PF09285 Elongation factor P, C-terminal Thewi_1230 PF08207 Elongation factor P (EF-P) KOW-like domain Thewi_1234 PF06686 Stage III sporulation protein AC/AD protein family Thewi_1235 PF06686 Stage III sporulation protein AC/AD protein family Thewi_1236 PF09546 Stage III sporulation protein AE (spore_III_AE) Thewi_1237 PF09581 Stage III sporulation protein AF (Spore_III_AF) Thewi_1240 PF03780 Asp23 family, cell envelope-related function Thewi_1241 PF01029 NusB family Thewi_1242 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thewi_1242 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thewi_1243 PF13742 OB-fold nucleic acid binding domain Thewi_1243 PF02601 Exonuclease VII, large subunit Thewi_1244 PF02609 Exonuclease VII small subunit Thewi_1245 PF00348 Polyprenyl synthetase Thewi_1247 PF02780 Transketolase, C-terminal domain Thewi_1247 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thewi_1247 PF02779 Transketolase, pyrimidine binding domain Thewi_1248 PF01728 FtsJ-like methyltransferase Thewi_1248 PF01479 S4 domain Thewi_1249 PF01513 ATP-NAD kinase Thewi_1250 PF02863 Arginine repressor, C-terminal domain Thewi_1250 PF01316 Arginine repressor, DNA binding domain Thewi_1251 PF13476 AAA domain Thewi_1252 PF17820 PDZ domain Thewi_1252 PF05580 SpoIVB peptidase S55 Thewi_1253 PF00072 Response regulator receiver domain Thewi_1253 PF08769 Sporulation initiation factor Spo0A C terminal Thewi_1256 PF00535 Glycosyl transferase family 2 Thewi_1257 PF00953 Glycosyl transferase family 4 Thewi_1260 PF00293 NUDIX domain Thewi_1262 PF01944 Stage II sporulation protein M Thewi_1264 PF00768 D-alanyl-D-alanine carboxypeptidase Thewi_1264 PF07943 Penicillin-binding protein 5, C-terminal domain Thewi_1265 PF01740 STAS domain Thewi_1266 PF13581 Histidine kinase-like ATPase domain Thewi_1267 PF04545 Sigma-70, region 4 Thewi_1267 PF04539 Sigma-70 region 3 Thewi_1267 PF04542 Sigma-70 region 2 Thewi_1268 PF07311 Dodecin Thewi_1269 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thewi_1271 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thewi_1272 PF13735 tRNA nucleotidyltransferase domain 2 putative Thewi_1272 PF01743 Poly A polymerase head domain Thewi_1272 PF12627 Probable RNA and SrmB- binding site of polymerase A Thewi_1273 PF02163 Peptidase family M50 Thewi_1274 PF02616 Segregation and condensation protein ScpA Thewi_1275 PF04079 Segregation and condensation complex subunit ScpB Thewi_1280 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Thewi_1282 PF00768 D-alanyl-D-alanine carboxypeptidase Thewi_1282 PF07943 Penicillin-binding protein 5, C-terminal domain Thewi_1285 PF13932 GidA associated domain Thewi_1285 PF01134 Glucose inhibited division protein A Thewi_1286 PF00849 RNA pseudouridylate synthase Thewi_1286 PF01479 S4 domain Thewi_1288 PF17284 Spermidine synthase tetramerisation domain Thewi_1289 PF00491 Arginase family Thewi_1290 PF00682 HMGL-like Thewi_1290 PF00364 Biotin-requiring enzyme Thewi_1290 PF02436 Conserved carboxylase domain Thewi_1291 PF01476 LysM domain Thewi_1291 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thewi_1293 PF01975 Survival protein SurE Thewi_1295 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thewi_1295 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thewi_1295 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thewi_1296 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thewi_1298 PF01418 Helix-turn-helix domain, rpiR family Thewi_1298 PF01380 SIS domain Thewi_1299 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thewi_1299 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Thewi_1301 PF00300 Histidine phosphatase superfamily (branch 1) Thewi_1304 PF07736 Chorismate mutase type I Thewi_1305 PF02224 Cytidylate kinase Thewi_1306 PF01553 Acyltransferase Thewi_1307 PF02401 LytB protein Thewi_1308 PF02401 LytB protein Thewi_1308 PF00575 S1 RNA binding domain Thewi_1309 PF13936 Helix-turn-helix domain Thewi_1310 PF02675 S-adenosylmethionine decarboxylase Thewi_1311 PF03705 CheR methyltransferase, all-alpha domain Thewi_1311 PF01739 CheR methyltransferase, SAM binding domain Thewi_1312 PF04055 Radical SAM superfamily Thewi_1312 PF01938 TRAM domain Thewi_1312 PF00919 Uncharacterized protein family UPF0004 Thewi_1313 PF01624 MutS domain I Thewi_1313 PF05188 MutS domain II Thewi_1313 PF05192 MutS domain III Thewi_1313 PF00488 MutS domain V Thewi_1313 PF05190 MutS family domain IV Thewi_1316 PF17209 Hfq protein Thewi_1317 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thewi_1317 PF03807 NADP oxidoreductase coenzyme F420-dependent Thewi_1318 PF00075 RNase H Thewi_1319 PF00589 Phage integrase family Thewi_1319 PF02899 Phage integrase, N-terminal SAM-like domain Thewi_1320 PF06838 Methionine gamma-lyase Thewi_1321 PF17866 AAA lid domain Thewi_1321 PF00004 ATPase family associated with various cellular activities (AAA) Thewi_1322 PF10397 Adenylosuccinate lyase C-terminus Thewi_1322 PF00206 Lyase Thewi_1323 PF00155 Aminotransferase class I and II Thewi_1324 PF02811 PHP domain Thewi_1325 PF04232 Stage V sporulation protein S (SpoVS) Thewi_1326 PF13277 YmdB-like protein Thewi_1327 PF01966 HD domain Thewi_1327 PF00013 KH domain Thewi_1327 PF12072 Domain of unknown function (DUF3552) Thewi_1328 PF13936 Helix-turn-helix domain Thewi_1330 PF02631 RecX family Thewi_1331 PF00154 recA bacterial DNA recombination protein Thewi_1332 PF02464 Competence-damaged protein Thewi_1332 PF18146 Damage-inducible protein CinA KH domain Thewi_1332 PF00994 Probable molybdopterin binding domain Thewi_1333 PF01066 CDP-alcohol phosphatidyltransferase Thewi_1334 PF04055 Radical SAM superfamily Thewi_1334 PF18693 TRAM domain Thewi_1334 PF00919 Uncharacterized protein family UPF0004 Thewi_1337 PF00574 Clp protease Thewi_1338 PF13840 ACT domain Thewi_1338 PF00696 Amino acid kinase family Thewi_1340 PF00692 dUTPase Thewi_1341 PF05193 Peptidase M16 inactive domain Thewi_1341 PF00675 Insulinase (Peptidase family M16) Thewi_1343 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thewi_1343 PF00013 KH domain Thewi_1343 PF00575 S1 RNA binding domain Thewi_1343 PF03725 3' exoribonuclease family, domain 2 Thewi_1343 PF01138 3' exoribonuclease family, domain 1 Thewi_1344 PF00312 Ribosomal protein S15 Thewi_1346 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thewi_1346 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thewi_1346 PF09157 Pseudouridine synthase II TruB, C-terminal Thewi_1347 PF01368 DHH family Thewi_1347 PF02272 DHHA1 domain Thewi_1348 PF02033 Ribosome-binding factor A Thewi_1349 PF04760 Translation initiation factor IF-2, N-terminal region Thewi_1349 PF11987 Translation-initiation factor 2 Thewi_1349 PF00009 Elongation factor Tu GTP binding domain Thewi_1351 PF04296 Protein of unknown function (DUF448) Thewi_1352 PF00575 S1 RNA binding domain Thewi_1352 PF08529 NusA N-terminal domain Thewi_1352 PF13184 NusA-like KH domain Thewi_1353 PF17384 RimP C-terminal SH3 domain Thewi_1353 PF02576 RimP N-terminal domain Thewi_1354 PF00929 Exonuclease Thewi_1354 PF11490 DNA polymerase III polC-type N-terminus II Thewi_1354 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thewi_1354 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thewi_1354 PF14579 Helix-hairpin-helix motif Thewi_1354 PF02811 PHP domain Thewi_1355 PF00535 Glycosyl transferase family 2 Thewi_1356 PF04551 GcpE protein Thewi_1357 PF02163 Peptidase family M50 Thewi_1357 PF17820 PDZ domain Thewi_1358 PF13288 DXP reductoisomerase C-terminal domain Thewi_1358 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thewi_1358 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thewi_1360 PF01255 Putative undecaprenyl diphosphate synthase Thewi_1362 PF01765 Ribosome recycling factor Thewi_1363 PF00696 Amino acid kinase family Thewi_1364 PF00889 Elongation factor TS Thewi_1365 PF00318 Ribosomal protein S2 Thewi_1368 PF04539 Sigma-70 region 3 Thewi_1368 PF04545 Sigma-70, region 4 Thewi_1368 PF04542 Sigma-70 region 2 Thewi_1369 PF03975 CheD chemotactic sensory transduction Thewi_1370 PF04509 CheC-like family Thewi_1371 PF01584 CheW-like domain Thewi_1372 PF07194 P2 response regulator binding domain Thewi_1372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_1372 PF01627 Hpt domain Thewi_1372 PF01584 CheW-like domain Thewi_1372 PF02895 Signal transducing histidine kinase, homodimeric domain Thewi_1373 PF00072 Response regulator receiver domain Thewi_1373 PF01339 CheB methylesterase Thewi_1375 PF10609 NUBPL iron-transfer P-loop NTPase Thewi_1376 PF00448 SRP54-type protein, GTPase domain Thewi_1377 PF00771 FHIPEP family Thewi_1378 PF01312 FlhB HrpN YscU SpaS Family Thewi_1379 PF01311 Bacterial export proteins, family 1 Thewi_1380 PF01313 Bacterial export proteins, family 3 Thewi_1381 PF00813 FliP family Thewi_1383 PF00072 Response regulator receiver domain Thewi_1384 PF04509 CheC-like family Thewi_1384 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thewi_1385 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thewi_1385 PF02154 Flagellar motor switch protein FliM Thewi_1387 PF06289 Flagellar and Swarming motility proteins Thewi_1388 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thewi_1388 PF07559 Flagellar basal body protein FlaE Thewi_1388 PF00460 Flagella basal body rod protein Thewi_1390 PF03963 Flagellar hook capping protein - N-terminal region Thewi_1394 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thewi_1394 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thewi_1394 PF18269 T3SS EscN ATPase C-terminal domain Thewi_1396 PF01706 FliG C-terminal domain Thewi_1396 PF14841 FliG middle domain Thewi_1396 PF14842 FliG N-terminal domain Thewi_1398 PF02049 Flagellar hook-basal body complex protein FliE Thewi_1399 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thewi_1399 PF00460 Flagella basal body rod protein Thewi_1400 PF00460 Flagella basal body rod protein Thewi_1401 PF06018 CodY GAF-like domain Thewi_1401 PF08222 CodY helix-turn-helix domain Thewi_1403 PF00227 Proteasome subunit Thewi_1404 PF01396 Topoisomerase DNA binding C4 zinc finger Thewi_1404 PF01131 DNA topoisomerase Thewi_1404 PF01751 Toprim domain Thewi_1405 PF17782 DprA winged helix domain Thewi_1405 PF02481 DNA recombination-mediator protein A Thewi_1406 PF01351 Ribonuclease HII Thewi_1407 PF02021 Uncharacterised protein family UPF0102 Thewi_1408 PF00579 tRNA synthetases class I (W and Y) Thewi_1409 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thewi_1409 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thewi_1410 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thewi_1410 PF01078 Magnesium chelatase, subunit ChlI Thewi_1412 PF01245 Ribosomal protein L19 Thewi_1413 PF01746 tRNA (Guanine-1)-methyltransferase Thewi_1414 PF05239 PRC-barrel domain Thewi_1414 PF01782 RimM N-terminal domain Thewi_1416 PF00886 Ribosomal protein S16 Thewi_1417 PF02978 Signal peptide binding domain Thewi_1417 PF02881 SRP54-type protein, helical bundle domain Thewi_1417 PF00448 SRP54-type protein, GTPase domain Thewi_1418 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Thewi_1419 PF02881 SRP54-type protein, helical bundle domain Thewi_1419 PF00448 SRP54-type protein, GTPase domain Thewi_1420 PF02463 RecF/RecN/SMC N terminal domain Thewi_1420 PF06470 SMC proteins Flexible Hinge Domain Thewi_1422 PF04232 Stage V sporulation protein S (SpoVS) Thewi_1424 PF00035 Double-stranded RNA binding motif Thewi_1424 PF14622 Ribonuclease-III-like Thewi_1425 PF02801 Beta-ketoacyl synthase, C-terminal domain Thewi_1425 PF00109 Beta-ketoacyl synthase, N-terminal domain Thewi_1426 PF00550 Phosphopantetheine attachment site Thewi_1428 PF00698 Acyl transferase domain Thewi_1429 PF03060 Nitronate monooxygenase Thewi_1430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thewi_1430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thewi_1431 PF02504 Fatty acid synthesis protein Thewi_1433 PF01783 Ribosomal L32p protein family Thewi_1434 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thewi_1435 PF00871 Acetokinase family Thewi_1436 PF01515 Phosphate acetyl/butaryl transferase Thewi_1438 PF07670 Nucleoside recognition Thewi_1440 PF01467 Cytidylyltransferase-like Thewi_1442 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thewi_1443 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thewi_1444 PF02645 Uncharacterised protein, DegV family COG1307 Thewi_1445 PF00271 Helicase conserved C-terminal domain Thewi_1445 PF00270 DEAD/DEAH box helicase Thewi_1445 PF17191 RecG wedge domain Thewi_1446 PF02734 DAK2 domain Thewi_1446 PF13684 Dihydroxyacetone kinase family Thewi_1447 PF03780 Asp23 family, cell envelope-related function Thewi_1448 PF00830 Ribosomal L28 family Thewi_1452 PF16745 RsgA N-terminal domain Thewi_1452 PF03193 RsgA GTPase Thewi_1453 PF03793 PASTA domain Thewi_1453 PF00069 Protein kinase domain Thewi_1455 PF04055 Radical SAM superfamily Thewi_1456 PF01029 NusB family Thewi_1456 PF01189 16S rRNA methyltransferase RsmB/F Thewi_1457 PF04298 Putative neutral zinc metallopeptidase Thewi_1459 PF00551 Formyl transferase Thewi_1459 PF02911 Formyl transferase, C-terminal domain Thewi_1460 PF01327 Polypeptide deformylase Thewi_1461 PF04851 Type III restriction enzyme, res subunit Thewi_1461 PF17764 3′ DNA-binding domain (3′BD) Thewi_1461 PF00271 Helicase conserved C-terminal domain Thewi_1461 PF18074 Primosomal protein N C-terminal domain Thewi_1461 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thewi_1462 PF02441 Flavoprotein Thewi_1462 PF04127 DNA / pantothenate metabolism flavoprotein Thewi_1463 PF01192 RNA polymerase Rpb6 Thewi_1464 PF00625 Guanylate kinase Thewi_1465 PF04025 Domain of unknown function (DUF370) Thewi_1466 PF03755 YicC-like family, N-terminal region Thewi_1466 PF08340 Domain of unknown function (DUF1732) Thewi_1467 PF01678 Diaminopimelate epimerase Thewi_1468 PF07690 Major Facilitator Superfamily Thewi_1468 PF00083 Sugar (and other) transporter Thewi_1472 PF01636 Phosphotransferase enzyme family Thewi_1473 PF00005 ABC transporter Thewi_1473 PF09383 NIL domain Thewi_1474 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1475 PF03180 NLPA lipoprotein Thewi_1476 PF01177 Asp/Glu/Hydantoin racemase Thewi_1477 PF01171 PP-loop family Thewi_1478 PF17785 PUA-like domain Thewi_1478 PF10672 S-adenosylmethionine-dependent methyltransferase Thewi_1479 PF01510 N-acetylmuramoyl-L-alanine amidase Thewi_1479 PF01471 Putative peptidoglycan binding domain Thewi_1480 PF00156 Phosphoribosyl transferase domain Thewi_1481 PF01180 Dihydroorotate dehydrogenase Thewi_1482 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thewi_1483 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Thewi_1484 PF01979 Amidohydrolase family Thewi_1485 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thewi_1485 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thewi_1486 PF00156 Phosphoribosyl transferase domain Thewi_1487 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thewi_1487 PF02769 AIR synthase related protein, C-terminal domain Thewi_1487 PF00586 AIR synthase related protein, N-terminal domain Thewi_1488 PF01479 S4 domain Thewi_1488 PF00849 RNA pseudouridylate synthase Thewi_1489 PF01252 Signal peptidase (SPase) II Thewi_1499 PF00665 Integrase core domain Thewi_1499 PF02796 Helix-turn-helix domain of resolvase Thewi_1501 PF01741 Large-conductance mechanosensitive channel, MscL Thewi_1502 PF01925 Sulfite exporter TauE/SafE Thewi_1503 PF00881 Nitroreductase family Thewi_1504 PF04542 Sigma-70 region 2 Thewi_1504 PF08281 Sigma-70, region 4 Thewi_1507 PF04024 PspC domain Thewi_1511 PF01053 Cys/Met metabolism PLP-dependent enzyme Thewi_1514 PF00665 Integrase core domain Thewi_1514 PF02796 Helix-turn-helix domain of resolvase Thewi_1516 PF00578 AhpC/TSA family Thewi_1517 PF00793 DAHP synthetase I family Thewi_1517 PF18152 DAHP synthase ferredoxin-like domain Thewi_1518 PF00290 Tryptophan synthase alpha chain Thewi_1519 PF00291 Pyridoxal-phosphate dependent enzyme Thewi_1520 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thewi_1521 PF00218 Indole-3-glycerol phosphate synthase Thewi_1522 PF02885 Glycosyl transferase family, helical bundle domain Thewi_1522 PF00591 Glycosyl transferase family, a/b domain Thewi_1523 PF02885 Glycosyl transferase family, helical bundle domain Thewi_1523 PF00117 Glutamine amidotransferase class-I Thewi_1523 PF00591 Glycosyl transferase family, a/b domain Thewi_1525 PF01910 Thiamine-binding protein Thewi_1526 PF01053 Cys/Met metabolism PLP-dependent enzyme Thewi_1527 PF01048 Phosphorylase superfamily Thewi_1528 PF01008 Initiation factor 2 subunit family Thewi_1529 PF00596 Class II Aldolase and Adducin N-terminal domain Thewi_1530 PF01979 Amidohydrolase family Thewi_1531 PF06827 Zinc finger found in FPG and IleRS Thewi_1531 PF08264 Anticodon-binding domain of tRNA Thewi_1531 PF00133 tRNA synthetases class I (I, L, M and V) Thewi_1533 PF05103 DivIVA protein Thewi_1534 PF17774 Putative RNA-binding domain in YlmH Thewi_1534 PF01479 S4 domain Thewi_1536 PF04472 Cell division protein SepF Thewi_1537 PF01168 Alanine racemase, N-terminal domain Thewi_1540 PF01042 Endoribonuclease L-PSP Thewi_1542 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_1542 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thewi_1543 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Thewi_1543 PF13378 Enolase C-terminal domain-like Thewi_1547 PF02447 GntP family permease Thewi_1548 PF02595 Glycerate kinase family Thewi_1552 PF10609 NUBPL iron-transfer P-loop NTPase Thewi_1552 PF01883 Iron-sulfur cluster assembly protein Thewi_1557 PF01022 Bacterial regulatory protein, arsR family Thewi_1560 PF07690 Major Facilitator Superfamily Thewi_1562 PF00005 ABC transporter Thewi_1564 PF01043 SecA preprotein cross-linking domain Thewi_1564 PF02810 SEC-C motif Thewi_1564 PF07517 SecA DEAD-like domain Thewi_1564 PF07516 SecA Wing and Scaffold domain Thewi_1565 PF13520 Amino acid permease Thewi_1571 PF00072 Response regulator receiver domain Thewi_1575 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thewi_1575 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thewi_1576 PF02660 Glycerol-3-phosphate acyltransferase Thewi_1577 PF01926 50S ribosome-binding GTPase Thewi_1577 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thewi_1582 PF14045 YIEGIA protein Thewi_1585 PF01895 PhoU domain Thewi_1586 PF00005 ABC transporter Thewi_1587 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1588 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1589 PF12849 PBP superfamily domain Thewi_1591 PF00486 Transcriptional regulatory protein, C terminal Thewi_1591 PF00072 Response regulator receiver domain Thewi_1592 PF03477 ATP cone domain Thewi_1594 PF05239 PRC-barrel domain Thewi_1595 PF04539 Sigma-70 region 3 Thewi_1595 PF04545 Sigma-70, region 4 Thewi_1595 PF04542 Sigma-70 region 2 Thewi_1596 PF04545 Sigma-70, region 4 Thewi_1596 PF04542 Sigma-70 region 2 Thewi_1598 PF00091 Tubulin/FtsZ family, GTPase domain Thewi_1598 PF12327 FtsZ family, C-terminal domain Thewi_1599 PF02491 SHS2 domain inserted in FTSA Thewi_1600 PF06947 Protein of unknown function (DUF1290) Thewi_1601 PF05949 Bacterial protein of unknown function (DUF881) Thewi_1603 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thewi_1604 PF04101 Glycosyltransferase family 28 C-terminal domain Thewi_1604 PF03033 Glycosyltransferase family 28 N-terminal domain Thewi_1605 PF01098 Cell cycle protein Thewi_1606 PF02875 Mur ligase family, glutamate ligase domain Thewi_1606 PF08245 Mur ligase middle domain Thewi_1607 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thewi_1607 PF00953 Glycosyl transferase family 4 Thewi_1608 PF01225 Mur ligase family, catalytic domain Thewi_1608 PF02875 Mur ligase family, glutamate ligase domain Thewi_1608 PF08245 Mur ligase middle domain Thewi_1609 PF01225 Mur ligase family, catalytic domain Thewi_1609 PF02875 Mur ligase family, glutamate ligase domain Thewi_1609 PF08245 Mur ligase middle domain Thewi_1610 PF03793 PASTA domain Thewi_1610 PF00905 Penicillin binding protein transpeptidase domain Thewi_1610 PF03717 Penicillin-binding Protein dimerisation domain Thewi_1612 PF01795 MraW methylase family Thewi_1613 PF02381 MraZ protein, putative antitoxin-like Thewi_1614 PF00675 Insulinase (Peptidase family M16) Thewi_1614 PF05193 Peptidase M16 inactive domain Thewi_1615 PF05193 Peptidase M16 inactive domain Thewi_1616 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Thewi_1621 PF02926 THUMP domain Thewi_1621 PF02568 Thiamine biosynthesis protein (ThiI) Thewi_1622 PF00266 Aminotransferase class-V Thewi_1623 PF02583 Metal-sensitive transcriptional repressor Thewi_1624 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thewi_1627 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thewi_1627 PF00364 Biotin-requiring enzyme Thewi_1627 PF02817 e3 binding domain Thewi_1628 PF01513 ATP-NAD kinase Thewi_1629 PF02779 Transketolase, pyrimidine binding domain Thewi_1629 PF02780 Transketolase, C-terminal domain Thewi_1630 PF00676 Dehydrogenase E1 component Thewi_1631 PF00118 TCP-1/cpn60 chaperonin family Thewi_1633 PF13426 PAS domain Thewi_1633 PF00158 Sigma-54 interaction domain Thewi_1633 PF02954 Bacterial regulatory protein, Fis family Thewi_1634 PF04055 Radical SAM superfamily Thewi_1635 PF03099 Biotin/lipoate A/B protein ligase family Thewi_1640 PF00188 Cysteine-rich secretory protein family Thewi_1641 PF02127 Aminopeptidase I zinc metalloprotease (M18) Thewi_1642 PF00196 Bacterial regulatory proteins, luxR family Thewi_1642 PF00072 Response regulator receiver domain Thewi_1643 PF07730 Histidine kinase Thewi_1643 PF05384 Sensor protein DegS Thewi_1643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_1645 PF04463 Protein of unknown function (DUF523) Thewi_1646 PF01713 Smr domain Thewi_1646 PF00488 MutS domain V Thewi_1647 PF01136 Peptidase family U32 Thewi_1647 PF12392 Collagenase Thewi_1649 PF03483 B3/4 domain Thewi_1649 PF03484 tRNA synthetase B5 domain Thewi_1649 PF03147 Ferredoxin-fold anticodon binding domain Thewi_1649 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thewi_1649 PF01588 Putative tRNA binding domain Thewi_1650 PF01409 tRNA synthetases class II core domain (F) Thewi_1650 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Thewi_1653 PF00453 Ribosomal protein L20 Thewi_1654 PF01632 Ribosomal protein L35 Thewi_1655 PF00707 Translation initiation factor IF-3, C-terminal domain Thewi_1655 PF05198 Translation initiation factor IF-3, N-terminal domain Thewi_1656 PF13936 Helix-turn-helix domain Thewi_1657 PF01264 Chorismate synthase Thewi_1659 PF03129 Anticodon binding domain Thewi_1659 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thewi_1659 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thewi_1659 PF02824 TGS domain Thewi_1660 PF04286 Protein of unknown function (DUF445) Thewi_1663 PF00486 Transcriptional regulatory protein, C terminal Thewi_1663 PF00072 Response regulator receiver domain Thewi_1664 PF00085 Thioredoxin Thewi_1665 PF01430 Hsp33 protein Thewi_1666 PF00313 'Cold-shock' DNA-binding domain Thewi_1667 PF02146 Sir2 family Thewi_1670 PF01106 NifU-like domain Thewi_1671 PF13185 GAF domain Thewi_1672 PF01790 Prolipoprotein diacylglyceryl transferase Thewi_1675 PF01546 Peptidase family M20/M25/M40 Thewi_1677 PF01238 Phosphomannose isomerase type I Thewi_1678 PF01048 Phosphorylase superfamily Thewi_1679 PF01784 NIF3 (NGG1p interacting factor 3) Thewi_1680 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Thewi_1681 PF00140 Sigma-70 factor, region 1.2 Thewi_1681 PF04542 Sigma-70 region 2 Thewi_1681 PF04539 Sigma-70 region 3 Thewi_1681 PF03979 Sigma-70 factor, region 1.1 Thewi_1681 PF04545 Sigma-70, region 4 Thewi_1682 PF01807 CHC2 zinc finger Thewi_1682 PF08275 DNA primase catalytic core, N-terminal domain Thewi_1682 PF10410 DnaB-helicase binding domain of primase Thewi_1683 PF01966 HD domain Thewi_1683 PF13286 Phosphohydrolase-associated domain Thewi_1684 PF03840 Preprotein translocase SecG subunit Thewi_1685 PF00113 Enolase, C-terminal TIM barrel domain Thewi_1685 PF03952 Enolase, N-terminal domain Thewi_1687 PF00121 Triosephosphate isomerase Thewi_1688 PF00162 Phosphoglycerate kinase Thewi_1689 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thewi_1689 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thewi_1690 PF04198 Putative sugar-binding domain Thewi_1691 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thewi_1691 PF04552 Sigma-54, DNA binding domain Thewi_1691 PF04963 Sigma-54 factor, core binding domain Thewi_1692 PF00708 Acylphosphatase Thewi_1695 PF01475 Ferric uptake regulator family Thewi_1696 PF04294 VanW like protein Thewi_1697 PF00730 HhH-GPD superfamily base excision DNA repair protein Thewi_1697 PF00633 Helix-hairpin-helix motif Thewi_1697 PF10576 Iron-sulfur binding domain of endonuclease III Thewi_1698 PF08331 Domain of unknown function (DUF1730) Thewi_1699 PF05362 Lon protease (S16) C-terminal proteolytic domain Thewi_1699 PF13654 AAA domain Thewi_1703 PF13186 Iron-sulfur cluster-binding domain Thewi_1703 PF04055 Radical SAM superfamily Thewi_1704 PF00672 HAMP domain Thewi_1704 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_1704 PF02743 Cache domain Thewi_1705 PF02824 TGS domain Thewi_1705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thewi_1705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thewi_1705 PF03129 Anticodon binding domain Thewi_1711 PF06782 Uncharacterised protein family (UPF0236) Thewi_1712 PF13936 Helix-turn-helix domain Thewi_1720 PF00689 Cation transporting ATPase, C-terminus Thewi_1720 PF00690 Cation transporter/ATPase, N-terminus Thewi_1723 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Thewi_1726 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thewi_1726 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thewi_1729 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_1729 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_1729 PF01842 ACT domain Thewi_1731 PF01842 ACT domain Thewi_1731 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_1731 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_1732 PF00701 Dihydrodipicolinate synthetase family Thewi_1733 PF01116 Fructose-bisphosphate aldolase class-II Thewi_1734 PF02811 PHP domain Thewi_1735 PF13419 Haloacid dehalogenase-like hydrolase Thewi_1736 PF02502 Ribose/Galactose Isomerase Thewi_1737 PF02780 Transketolase, C-terminal domain Thewi_1737 PF02779 Transketolase, pyrimidine binding domain Thewi_1738 PF00456 Transketolase, thiamine diphosphate binding domain Thewi_1739 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thewi_1740 PF00158 Sigma-54 interaction domain Thewi_1742 PF00849 RNA pseudouridylate synthase Thewi_1743 PF00293 NUDIX domain Thewi_1743 PF13344 Haloacid dehalogenase-like hydrolase Thewi_1745 PF01293 Phosphoenolpyruvate carboxykinase Thewi_1749 PF02660 Glycerol-3-phosphate acyltransferase Thewi_1750 PF00535 Glycosyl transferase family 2 Thewi_1757 PF01938 TRAM domain Thewi_1757 PF05958 tRNA (Uracil-5-)-methyltransferase Thewi_1760 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Thewi_1763 PF05067 Manganese containing catalase Thewi_1764 PF04073 Aminoacyl-tRNA editing domain Thewi_1765 PF02310 B12 binding domain Thewi_1765 PF02607 B12 binding domain Thewi_1765 PF02965 Vitamin B12 dependent methionine synthase, activation domain Thewi_1765 PF00809 Pterin binding enzyme Thewi_1765 PF02574 Homocysteine S-methyltransferase Thewi_1766 PF02574 Homocysteine S-methyltransferase Thewi_1766 PF02219 Methylenetetrahydrofolate reductase Thewi_1767 PF11897 Protein of unknown function (DUF3417) Thewi_1767 PF00343 Carbohydrate phosphorylase Thewi_1768 PF00342 Phosphoglucose isomerase Thewi_1770 PF00881 Nitroreductase family Thewi_1771 PF01546 Peptidase family M20/M25/M40 Thewi_1771 PF07687 Peptidase dimerisation domain Thewi_1772 PF12146 Serine aminopeptidase, S33 Thewi_1774 PF08502 LeuA allosteric (dimerisation) domain Thewi_1774 PF00682 HMGL-like Thewi_1775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Thewi_1776 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1777 PF00571 CBS domain Thewi_1777 PF00005 ABC transporter Thewi_1778 PF03600 Citrate transporter Thewi_1778 PF02080 TrkA-C domain Thewi_1779 PF01554 MatE Thewi_1783 PF05958 tRNA (Uracil-5-)-methyltransferase Thewi_1783 PF01938 TRAM domain Thewi_1786 PF00224 Pyruvate kinase, barrel domain Thewi_1786 PF00391 PEP-utilising enzyme, mobile domain Thewi_1786 PF02887 Pyruvate kinase, alpha/beta domain Thewi_1787 PF00365 Phosphofructokinase Thewi_1789 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thewi_1789 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thewi_1789 PF14579 Helix-hairpin-helix motif Thewi_1789 PF02811 PHP domain Thewi_1790 PF00571 CBS domain Thewi_1790 PF00392 Bacterial regulatory proteins, gntR family Thewi_1790 PF03061 Thioesterase superfamily Thewi_1790 PF07085 DRTGG domain Thewi_1791 PF00381 PTS HPr component phosphorylation site Thewi_1792 PF02650 WhiA C-terminal HTH domain Thewi_1792 PF14527 WhiA LAGLIDADG-like domain Thewi_1792 PF10298 WhiA N-terminal LAGLIDADG-like domain Thewi_1794 PF00128 Alpha amylase, catalytic domain Thewi_1794 PF02903 Alpha amylase, N-terminal ig-like domain Thewi_1795 PF13464 Domain of unknown function (DUF4115) Thewi_1798 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1799 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1800 PF13416 Bacterial extracellular solute-binding protein Thewi_1801 PF02806 Alpha amylase, C-terminal all-beta domain Thewi_1801 PF00686 Starch binding domain Thewi_1801 PF01833 IPT/TIG domain Thewi_1801 PF00128 Alpha amylase, catalytic domain Thewi_1802 PF01933 Uncharacterised protein family UPF0052 Thewi_1803 PF03668 P-loop ATPase protein family Thewi_1804 PF02811 PHP domain Thewi_1805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thewi_1805 PF01565 FAD binding domain Thewi_1807 PF01734 Patatin-like phospholipase Thewi_1808 PF13977 BetI-type transcriptional repressor, C-terminal Thewi_1808 PF00440 Bacterial regulatory proteins, tetR family Thewi_1809 PF03109 ABC1 family Thewi_1814 PF00403 Heavy-metal-associated domain Thewi_1816 PF00266 Aminotransferase class-V Thewi_1817 PF00291 Pyridoxal-phosphate dependent enzyme Thewi_1820 PF00403 Heavy-metal-associated domain Thewi_1821 PF09335 SNARE associated Golgi protein Thewi_1822 PF02001 Protein of unknown function DUF134 Thewi_1823 PF00563 EAL domain Thewi_1823 PF00990 Diguanylate cyclase, GGDEF domain Thewi_1823 PF05231 MASE1 Thewi_1823 PF08447 PAS fold Thewi_1823 PF08448 PAS fold Thewi_1823 PF13426 PAS domain Thewi_1826 PF01475 Ferric uptake regulator family Thewi_1831 PF04023 FeoA domain Thewi_1831 PF07664 Ferrous iron transport protein B C terminus Thewi_1831 PF02421 Ferrous iron transport protein B Thewi_1831 PF07670 Nucleoside recognition Thewi_1831 PF17910 FeoB cytosolic helical domain Thewi_1835 PF01980 tRNA-methyltransferase O Thewi_1836 PF00005 ABC transporter Thewi_1837 PF01032 FecCD transport family Thewi_1840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thewi_1840 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_1841 PF04055 Radical SAM superfamily Thewi_1841 PF06968 Biotin and Thiamin Synthesis associated domain Thewi_1844 PF00753 Metallo-beta-lactamase superfamily Thewi_1844 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thewi_1846 PF10609 NUBPL iron-transfer P-loop NTPase Thewi_1847 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thewi_1850 PF00350 Dynamin family Thewi_1851 PF01209 ubiE/COQ5 methyltransferase family Thewi_1855 PF01861 Branched-chain polyamine synthase A C-terminal domain Thewi_1856 PF00356 Bacterial regulatory proteins, lacI family Thewi_1857 PF00294 pfkB family carbohydrate kinase Thewi_1858 PF00251 Glycosyl hydrolases family 32 N-terminal domain Thewi_1858 PF08244 Glycosyl hydrolases family 32 C terminal Thewi_1859 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1860 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1861 PF01547 Bacterial extracellular solute-binding protein Thewi_1870 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thewi_1872 PF00459 Inositol monophosphatase family Thewi_1878 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thewi_1878 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thewi_1879 PF03437 BtpA family Thewi_1880 PF08220 DeoR-like helix-turn-helix domain Thewi_1880 PF00455 DeoR C terminal sensor domain Thewi_1882 PF07517 SecA DEAD-like domain Thewi_1882 PF01043 SecA preprotein cross-linking domain Thewi_1882 PF02810 SEC-C motif Thewi_1882 PF07516 SecA Wing and Scaffold domain Thewi_1887 PF00005 ABC transporter Thewi_1888 PF00005 ABC transporter Thewi_1892 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Thewi_1892 PF00703 Glycosyl hydrolases family 2 Thewi_1892 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thewi_1892 PF16355 Domain of unknown function (DUF4982) Thewi_1892 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Thewi_1893 PF16875 Glycosyl hydrolase family 36 N-terminal domain Thewi_1893 PF16874 Glycosyl hydrolase family 36 C-terminal domain Thewi_1894 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1895 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_1896 PF13416 Bacterial extracellular solute-binding protein Thewi_1898 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thewi_1898 PF00480 ROK family Thewi_1899 PF16363 GDP-mannose 4,6 dehydratase Thewi_1900 PF08544 GHMP kinases C terminal Thewi_1900 PF10509 Galactokinase galactose-binding signature Thewi_1900 PF00288 GHMP kinases N terminal domain Thewi_1901 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Thewi_1901 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Thewi_1903 PF01081 KDPG and KHG aldolase Thewi_1904 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_1904 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_1906 PF03830 PTS system sorbose subfamily IIB component Thewi_1907 PF03830 PTS system sorbose subfamily IIB component Thewi_1907 PF03610 PTS system fructose IIA component Thewi_1908 PF03613 PTS system mannose/fructose/sorbose family IID component Thewi_1910 PF03610 PTS system fructose IIA component Thewi_1910 PF03830 PTS system sorbose subfamily IIB component Thewi_1911 PF03610 PTS system fructose IIA component Thewi_1911 PF03830 PTS system sorbose subfamily IIB component Thewi_1912 PF03610 PTS system fructose IIA component Thewi_1912 PF00874 PRD domain Thewi_1912 PF00158 Sigma-54 interaction domain Thewi_1913 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thewi_1913 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thewi_1915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_1915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_1917 PF08220 DeoR-like helix-turn-helix domain Thewi_1917 PF00455 DeoR C terminal sensor domain Thewi_1918 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_1918 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_1923 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thewi_1923 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thewi_1924 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thewi_1924 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thewi_1925 PF00356 Bacterial regulatory proteins, lacI family Thewi_1931 PF01871 AMMECR1 Thewi_1931 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Thewi_1933 PF00501 AMP-binding enzyme Thewi_1933 PF13193 AMP-binding enzyme C-terminal domain Thewi_1934 PF00480 ROK family Thewi_1935 PF02811 PHP domain Thewi_1936 PF07475 HPr Serine kinase C-terminal domain Thewi_1936 PF02603 HPr Serine kinase N terminus Thewi_1937 PF03099 Biotin/lipoate A/B protein ligase family Thewi_1937 PF02237 Biotin protein ligase C terminal domain Thewi_1937 PF08279 HTH domain Thewi_1938 PF01541 GIY-YIG catalytic domain Thewi_1938 PF02151 UvrB/uvrC motif Thewi_1938 PF08459 UvrC Helix-hairpin-helix N-terminal Thewi_1939 PF00905 Penicillin binding protein transpeptidase domain Thewi_1940 PF01098 Cell cycle protein Thewi_1941 PF16697 Inner membrane component of T3SS, cytoplasmic domain Thewi_1942 PF17755 UvrA DNA-binding domain Thewi_1942 PF17760 UvrA interaction domain Thewi_1943 PF00271 Helicase conserved C-terminal domain Thewi_1943 PF04851 Type III restriction enzyme, res subunit Thewi_1943 PF02151 UvrB/uvrC motif Thewi_1943 PF17757 UvrB interaction domain Thewi_1943 PF12344 Ultra-violet resistance protein B Thewi_1944 PF04029 2-phosphosulpholactate phosphatase Thewi_1945 PF17820 PDZ domain Thewi_1946 PF01471 Putative peptidoglycan binding domain Thewi_1946 PF03572 Peptidase family S41 Thewi_1946 PF17820 PDZ domain Thewi_1947 PF01551 Peptidase family M23 Thewi_1947 PF04225 Opacity-associated protein A LysM-like domain Thewi_1948 PF18075 FtsX extracellular domain Thewi_1948 PF02687 FtsX-like permease family Thewi_1949 PF00005 ABC transporter Thewi_1950 PF13556 PucR C-terminal helix-turn-helix domain Thewi_1950 PF17853 GGDEF-like domain Thewi_1950 PF05651 Putative sugar diacid recognition Thewi_1951 PF00005 ABC transporter Thewi_1951 PF17912 MalK OB fold domain Thewi_1951 PF03459 TOBE domain Thewi_1954 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thewi_1954 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thewi_1955 PF01386 Ribosomal L25p family Thewi_1955 PF14693 Ribosomal protein TL5, C-terminal domain Thewi_1956 PF00154 recA bacterial DNA recombination protein Thewi_1959 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Thewi_1966 PF06782 Uncharacterised protein family (UPF0236) Thewi_1975 PF00465 Iron-containing alcohol dehydrogenase Thewi_1976 PF00107 Zinc-binding dehydrogenase Thewi_1976 PF08240 Alcohol dehydrogenase GroES-like domain Thewi_1977 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thewi_1977 PF00175 Oxidoreductase NAD-binding domain Thewi_1978 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thewi_1978 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_1978 PF13247 4Fe-4S dicluster domain Thewi_1986 PF06782 Uncharacterised protein family (UPF0236) Thewi_1990 PF13419 Haloacid dehalogenase-like hydrolase Thewi_1992 PF02491 SHS2 domain inserted in FTSA Thewi_1993 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thewi_1994 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thewi_1995 PF17862 AAA+ lid domain Thewi_1995 PF00004 ATPase family associated with various cellular activities (AAA) Thewi_1995 PF01434 Peptidase family M41 Thewi_2000 PF00012 Hsp70 protein Thewi_2001 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thewi_2001 PF10996 Beta-Casp domain Thewi_2001 PF00753 Metallo-beta-lactamase superfamily Thewi_2002 PF03610 PTS system fructose IIA component Thewi_2002 PF00391 PEP-utilising enzyme, mobile domain Thewi_2002 PF00381 PTS HPr component phosphorylation site Thewi_2002 PF05524 PEP-utilising enzyme, N-terminal Thewi_2003 PF02734 DAK2 domain Thewi_2004 PF02733 Dak1 domain Thewi_2007 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_2007 PF04324 BFD-like [2Fe-2S] binding domain Thewi_2008 PF01266 FAD dependent oxidoreductase Thewi_2009 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thewi_2009 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thewi_2010 PF00230 Major intrinsic protein Thewi_2011 PF04309 Glycerol-3-phosphate responsive antiterminator Thewi_2013 PF01522 Polysaccharide deacetylase Thewi_2016 PF02702 Osmosensitive K+ channel His kinase sensor domain Thewi_2017 PF02669 K+-transporting ATPase, c chain Thewi_2019 PF03814 Potassium-transporting ATPase A subunit Thewi_2021 PF00483 Nucleotidyl transferase Thewi_2023 PF03845 Spore germination protein Thewi_2024 PF02585 GlcNAc-PI de-N-acetylase Thewi_2025 PF01244 Membrane dipeptidase (Peptidase family M19) Thewi_2026 PF00464 Serine hydroxymethyltransferase Thewi_2027 PF01502 Phosphoribosyl-AMP cyclohydrolase Thewi_2027 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Thewi_2028 PF00977 Histidine biosynthesis protein Thewi_2029 PF00977 Histidine biosynthesis protein Thewi_2030 PF00117 Glutamine amidotransferase class-I Thewi_2031 PF00475 Imidazoleglycerol-phosphate dehydratase Thewi_2032 PF00155 Aminotransferase class I and II Thewi_2033 PF00815 Histidinol dehydrogenase Thewi_2035 PF13393 Histidyl-tRNA synthetase Thewi_2042 PF00005 ABC transporter Thewi_2043 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thewi_2043 PF10091 Putative glucoamylase Thewi_2043 PF06165 Glycosyltransferase family 36 Thewi_2044 PF01544 CorA-like Mg2+ transporter protein Thewi_2047 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Thewi_2047 PF01189 16S rRNA methyltransferase RsmB/F Thewi_2047 PF17126 RsmF rRNA methyltransferase first C-terminal domain Thewi_2048 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thewi_2048 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thewi_2049 PF00561 alpha/beta hydrolase fold Thewi_2050 PF01053 Cys/Met metabolism PLP-dependent enzyme Thewi_2051 PF00742 Homoserine dehydrogenase Thewi_2051 PF01842 ACT domain Thewi_2051 PF03447 Homoserine dehydrogenase, NAD binding domain Thewi_2052 PF13936 Helix-turn-helix domain Thewi_2054 PF13936 Helix-turn-helix domain Thewi_2055 PF01964 Radical SAM ThiC family Thewi_2056 PF00301 Rubredoxin Thewi_2057 PF02702 Osmosensitive K+ channel His kinase sensor domain Thewi_2057 PF13493 Domain of unknown function (DUF4118) Thewi_2057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2057 PF00512 His Kinase A (phospho-acceptor) domain Thewi_2058 PF03553 Na+/H+ antiporter family Thewi_2059 PF00365 Phosphofructokinase Thewi_2061 PF02779 Transketolase, pyrimidine binding domain Thewi_2061 PF02780 Transketolase, C-terminal domain Thewi_2062 PF00456 Transketolase, thiamine diphosphate binding domain Thewi_2063 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thewi_2063 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thewi_2064 PF03808 Glycosyl transferase WecB/TagA/CpsF family Thewi_2069 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thewi_2071 PF01168 Alanine racemase, N-terminal domain Thewi_2071 PF00842 Alanine racemase, C-terminal domain Thewi_2073 PF01256 Carbohydrate kinase Thewi_2073 PF03853 YjeF-related protein N-terminus Thewi_2074 PF01648 4'-phosphopantetheinyl transferase superfamily Thewi_2078 PF03063 Prismane/CO dehydrogenase family Thewi_2081 PF04542 Sigma-70 region 2 Thewi_2081 PF08281 Sigma-70, region 4 Thewi_2085 PF00005 ABC transporter Thewi_2085 PF13732 Domain of unknown function (DUF4162) Thewi_2088 PF00578 AhpC/TSA family Thewi_2088 PF10417 C-terminal domain of 1-Cys peroxiredoxin Thewi_2094 PF00294 pfkB family carbohydrate kinase Thewi_2095 PF01116 Fructose-bisphosphate aldolase class-II Thewi_2096 PF00294 pfkB family carbohydrate kinase Thewi_2097 PF02653 Branched-chain amino acid transport system / permease component Thewi_2099 PF13407 Periplasmic binding protein domain Thewi_2109 PF00665 Integrase core domain Thewi_2109 PF02796 Helix-turn-helix domain of resolvase Thewi_2113 PF01208 Uroporphyrinogen decarboxylase (URO-D) Thewi_2114 PF02310 B12 binding domain Thewi_2114 PF02607 B12 binding domain Thewi_2115 PF12833 Helix-turn-helix domain Thewi_2115 PF10114 Sensory domain found in PocR Thewi_2120 PF03613 PTS system mannose/fructose/sorbose family IID component Thewi_2121 PF03609 PTS system sorbose-specific iic component Thewi_2122 PF03830 PTS system sorbose subfamily IIB component Thewi_2123 PF00158 Sigma-54 interaction domain Thewi_2123 PF03610 PTS system fructose IIA component Thewi_2123 PF00874 PRD domain Thewi_2124 PF13936 Helix-turn-helix domain Thewi_2130 PF03613 PTS system mannose/fructose/sorbose family IID component Thewi_2131 PF03609 PTS system sorbose-specific iic component Thewi_2132 PF03830 PTS system sorbose subfamily IIB component Thewi_2138 PF00753 Metallo-beta-lactamase superfamily Thewi_2138 PF03772 Competence protein Thewi_2138 PF13567 Domain of unknown function (DUF4131) Thewi_2143 PF02735 Ku70/Ku80 beta-barrel domain Thewi_2144 PF04675 DNA ligase N terminus Thewi_2144 PF01068 ATP dependent DNA ligase domain Thewi_2144 PF04679 ATP dependent DNA ligase C terminal region Thewi_2145 PF01894 Uncharacterised protein family UPF0047 Thewi_2149 PF13401 AAA domain Thewi_2149 PF11426 Tn7 transposition regulator TnsC Thewi_2150 PF00665 Integrase core domain Thewi_2151 PF08721 TnsA endonuclease C terminal Thewi_2151 PF08722 TnsA endonuclease N terminal Thewi_2155 PF01381 Helix-turn-helix Thewi_2156 PF00589 Phage integrase family Thewi_2156 PF02899 Phage integrase, N-terminal SAM-like domain Thewi_2159 PF08275 DNA primase catalytic core, N-terminal domain Thewi_2159 PF13662 Toprim domain Thewi_2159 PF00772 DnaB-like helicase N terminal domain Thewi_2159 PF01807 CHC2 zinc finger Thewi_2168 PF00271 Helicase conserved C-terminal domain Thewi_2168 PF00176 SNF2 family N-terminal domain Thewi_2175 PF01380 SIS domain Thewi_2176 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thewi_2176 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thewi_2176 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thewi_2176 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thewi_2177 PF01553 Acyltransferase Thewi_2177 PF00501 AMP-binding enzyme Thewi_2180 PF01515 Phosphate acetyl/butaryl transferase Thewi_2186 PF00871 Acetokinase family Thewi_2187 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thewi_2187 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Thewi_2188 PF01515 Phosphate acetyl/butaryl transferase Thewi_2189 PF00871 Acetokinase family Thewi_2191 PF02457 DisA bacterial checkpoint controller nucleotide-binding Thewi_2198 PF17863 AAA lid domain Thewi_2198 PF07726 ATPase family associated with various cellular activities (AAA) Thewi_2199 PF13419 Haloacid dehalogenase-like hydrolase Thewi_2200 PF01520 N-acetylmuramoyl-L-alanine amidase Thewi_2200 PF08239 Bacterial SH3 domain Thewi_2201 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Thewi_2201 PF01476 LysM domain Thewi_2202 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_2207 PF03372 Endonuclease/Exonuclease/phosphatase family Thewi_2208 PF01880 Desulfoferrodoxin Thewi_2209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2209 PF07194 P2 response regulator binding domain Thewi_2209 PF02895 Signal transducing histidine kinase, homodimeric domain Thewi_2209 PF01584 CheW-like domain Thewi_2209 PF01627 Hpt domain Thewi_2210 PF01584 CheW-like domain Thewi_2210 PF02895 Signal transducing histidine kinase, homodimeric domain Thewi_2210 PF01627 Hpt domain Thewi_2210 PF07194 P2 response regulator binding domain Thewi_2210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2211 PF01584 CheW-like domain Thewi_2211 PF01627 Hpt domain Thewi_2211 PF00072 Response regulator receiver domain Thewi_2212 PF03705 CheR methyltransferase, all-alpha domain Thewi_2212 PF01739 CheR methyltransferase, SAM binding domain Thewi_2214 PF01339 CheB methylesterase Thewi_2214 PF00072 Response regulator receiver domain Thewi_2215 PF01584 CheW-like domain Thewi_2216 PF08447 PAS fold Thewi_2216 PF13426 PAS domain Thewi_2216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_2217 PF00072 Response regulator receiver domain Thewi_2218 PF17853 GGDEF-like domain Thewi_2218 PF06018 CodY GAF-like domain Thewi_2218 PF13556 PucR C-terminal helix-turn-helix domain Thewi_2219 PF00689 Cation transporting ATPase, C-terminus Thewi_2219 PF00690 Cation transporter/ATPase, N-terminus Thewi_2220 PF00380 Ribosomal protein S9/S16 Thewi_2221 PF00572 Ribosomal protein L13 Thewi_2222 PF01416 tRNA pseudouridine synthase Thewi_2223 PF02361 Cobalt transport protein Thewi_2224 PF00005 ABC transporter Thewi_2225 PF00005 ABC transporter Thewi_2226 PF01196 Ribosomal protein L17 Thewi_2227 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thewi_2227 PF01000 RNA polymerase Rpb3/RpoA insert domain Thewi_2227 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thewi_2228 PF01479 S4 domain Thewi_2228 PF00163 Ribosomal protein S4/S9 N-terminal domain Thewi_2229 PF00411 Ribosomal protein S11 Thewi_2230 PF00416 Ribosomal protein S13/S18 Thewi_2231 PF00444 Ribosomal protein L36 Thewi_2232 PF01176 Translation initiation factor 1A / IF-1 Thewi_2234 PF00557 Metallopeptidase family M24 Thewi_2235 PF05191 Adenylate kinase, active site lid Thewi_2236 PF00344 SecY translocase Thewi_2237 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Thewi_2238 PF00333 Ribosomal protein S5, N-terminal domain Thewi_2238 PF03719 Ribosomal protein S5, C-terminal domain Thewi_2239 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thewi_2240 PF00347 Ribosomal protein L6 Thewi_2241 PF00410 Ribosomal protein S8 Thewi_2242 PF00253 Ribosomal protein S14p/S29e Thewi_2243 PF00673 ribosomal L5P family C-terminus Thewi_2243 PF00281 Ribosomal protein L5 Thewi_2244 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thewi_2244 PF00467 KOW motif Thewi_2245 PF00238 Ribosomal protein L14p/L23e Thewi_2246 PF00366 Ribosomal protein S17 Thewi_2247 PF00831 Ribosomal L29 protein Thewi_2248 PF00252 Ribosomal protein L16p/L10e Thewi_2249 PF00189 Ribosomal protein S3, C-terminal domain Thewi_2249 PF07650 KH domain Thewi_2250 PF00237 Ribosomal protein L22p/L17e Thewi_2251 PF00203 Ribosomal protein S19 Thewi_2252 PF03947 Ribosomal Proteins L2, C-terminal domain Thewi_2252 PF00181 Ribosomal Proteins L2, RNA binding domain Thewi_2253 PF00276 Ribosomal protein L23 Thewi_2254 PF00573 Ribosomal protein L4/L1 family Thewi_2255 PF00297 Ribosomal protein L3 Thewi_2256 PF00338 Ribosomal protein S10p/S20e Thewi_2257 PF03143 Elongation factor Tu C-terminal domain Thewi_2257 PF03144 Elongation factor Tu domain 2 Thewi_2257 PF00009 Elongation factor Tu GTP binding domain Thewi_2258 PF03144 Elongation factor Tu domain 2 Thewi_2258 PF00009 Elongation factor Tu GTP binding domain Thewi_2258 PF14492 Elongation Factor G, domain II Thewi_2258 PF00679 Elongation factor G C-terminus Thewi_2258 PF03764 Elongation factor G, domain IV Thewi_2259 PF00177 Ribosomal protein S7p/S5e Thewi_2260 PF00164 Ribosomal protein S12/S23 Thewi_2261 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Thewi_2262 PF04998 RNA polymerase Rpb1, domain 5 Thewi_2262 PF05000 RNA polymerase Rpb1, domain 4 Thewi_2262 PF04997 RNA polymerase Rpb1, domain 1 Thewi_2262 PF04983 RNA polymerase Rpb1, domain 3 Thewi_2262 PF00623 RNA polymerase Rpb1, domain 2 Thewi_2263 PF10385 RNA polymerase beta subunit external 1 domain Thewi_2263 PF04565 RNA polymerase Rpb2, domain 3 Thewi_2263 PF04560 RNA polymerase Rpb2, domain 7 Thewi_2263 PF04561 RNA polymerase Rpb2, domain 2 Thewi_2263 PF04563 RNA polymerase beta subunit Thewi_2263 PF00562 RNA polymerase Rpb2, domain 6 Thewi_2264 PF00542 Ribosomal protein L7/L12 C-terminal domain Thewi_2264 PF16320 Ribosomal protein L7/L12 dimerisation domain Thewi_2265 PF00466 Ribosomal protein L10 Thewi_2266 PF00687 Ribosomal protein L1p/L10e family Thewi_2267 PF00298 Ribosomal protein L11, RNA binding domain Thewi_2267 PF03946 Ribosomal protein L11, N-terminal domain Thewi_2268 PF02357 Transcription termination factor nusG Thewi_2268 PF00467 KOW motif Thewi_2269 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Thewi_2270 PF00471 Ribosomal protein L33 Thewi_2271 PF03143 Elongation factor Tu C-terminal domain Thewi_2271 PF00009 Elongation factor Tu GTP binding domain Thewi_2271 PF03144 Elongation factor Tu domain 2 Thewi_2272 PF04542 Sigma-70 region 2 Thewi_2272 PF08281 Sigma-70, region 4 Thewi_2273 PF05991 YacP-like NYN domain Thewi_2274 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thewi_2274 PF00588 SpoU rRNA Methylase family Thewi_2275 PF00636 Ribonuclease III domain Thewi_2276 PF01406 tRNA synthetases class I (C) catalytic domain Thewi_2276 PF09190 DALR domain Thewi_2277 PF00132 Bacterial transferase hexapeptide (six repeats) Thewi_2278 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thewi_2280 PF03129 Anticodon binding domain Thewi_2280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thewi_2280 PF04073 Aminoacyl-tRNA editing domain Thewi_2281 PF02542 YgbB family Thewi_2283 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thewi_2286 PF18073 Rubredoxin metal binding domain Thewi_2287 PF01566 Natural resistance-associated macrophage protein Thewi_2289 PF10431 C-terminal, D2-small domain, of ClpB protein Thewi_2289 PF00004 ATPase family associated with various cellular activities (AAA) Thewi_2289 PF17871 AAA lid domain Thewi_2289 PF02861 Clp amino terminal domain, pathogenicity island component Thewi_2289 PF07724 AAA domain (Cdc48 subfamily) Thewi_2290 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Thewi_2291 PF02151 UvrB/uvrC motif Thewi_2292 PF17727 CtsR C-terminal dimerization domain Thewi_2292 PF05848 CtsR N-terminal HTH domain Thewi_2294 PF00390 Malic enzyme, N-terminal domain Thewi_2294 PF03949 Malic enzyme, NAD binding domain Thewi_2295 PF00679 Elongation factor G C-terminus Thewi_2295 PF14492 Elongation Factor G, domain II Thewi_2295 PF03764 Elongation factor G, domain IV Thewi_2295 PF00009 Elongation factor Tu GTP binding domain Thewi_2295 PF03144 Elongation factor Tu domain 2 Thewi_2296 PF00391 PEP-utilising enzyme, mobile domain Thewi_2296 PF02896 PEP-utilising enzyme, TIM barrel domain Thewi_2296 PF05524 PEP-utilising enzyme, N-terminal Thewi_2297 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_2298 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_2298 PF02378 Phosphotransferase system, EIIC Thewi_2298 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_2299 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_2299 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_2299 PF02378 Phosphotransferase system, EIIC Thewi_2300 PF08279 HTH domain Thewi_2300 PF00874 PRD domain Thewi_2300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_2300 PF05043 Mga helix-turn-helix domain Thewi_2301 PF00072 Response regulator receiver domain Thewi_2301 PF00990 Diguanylate cyclase, GGDEF domain Thewi_2302 PF02867 Ribonucleotide reductase, barrel domain Thewi_2302 PF00317 Ribonucleotide reductase, all-alpha domain Thewi_2302 PF03477 ATP cone domain Thewi_2304 PF00202 Aminotransferase class-III Thewi_2305 PF05979 Bacterial protein of unknown function (DUF896) Thewi_2307 PF00326 Prolyl oligopeptidase family Thewi_2307 PF07676 WD40-like Beta Propeller Repeat Thewi_2309 PF01242 6-pyruvoyl tetrahydropterin synthase Thewi_2310 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thewi_2311 PF00809 Pterin binding enzyme Thewi_2312 PF01227 GTP cyclohydrolase I Thewi_2313 PF01336 OB-fold nucleic acid binding domain Thewi_2313 PF00152 tRNA synthetases class II (D, K and N) Thewi_2314 PF03449 Transcription elongation factor, N-terminal Thewi_2314 PF01272 Transcription elongation factor, GreA/GreB, C-term Thewi_2315 PF00202 Aminotransferase class-III Thewi_2319 PF05504 Spore germination B3/ GerAC like, C-terminal Thewi_2320 PF03323 Bacillus/Clostridium GerA spore germination protein Thewi_2321 PF03845 Spore germination protein Thewi_2322 PF03309 Type III pantothenate kinase Thewi_2323 PF12822 ECF transporter, substrate-specific component Thewi_2324 PF00364 Biotin-requiring enzyme Thewi_2326 PF01039 Carboxyl transferase domain Thewi_2329 PF02310 B12 binding domain Thewi_2329 PF01642 Methylmalonyl-CoA mutase Thewi_2330 PF01642 Methylmalonyl-CoA mutase Thewi_2330 PF02310 B12 binding domain Thewi_2332 PF01268 Formate--tetrahydrofolate ligase Thewi_2333 PF00989 PAS fold Thewi_2333 PF00512 His Kinase A (phospho-acceptor) domain Thewi_2333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2334 PF06480 FtsH Extracellular Thewi_2334 PF17862 AAA+ lid domain Thewi_2334 PF00004 ATPase family associated with various cellular activities (AAA) Thewi_2334 PF01434 Peptidase family M41 Thewi_2336 PF01171 PP-loop family Thewi_2336 PF11734 TilS substrate C-terminal domain Thewi_2338 PF07228 Stage II sporulation protein E (SpoIIE) Thewi_2340 PF06782 Uncharacterised protein family (UPF0236) Thewi_2341 PF00892 EamA-like transporter family Thewi_2342 PF08281 Sigma-70, region 4 Thewi_2344 PF00005 ABC transporter Thewi_2345 PF12679 ABC-2 family transporter protein Thewi_2348 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thewi_2348 PF10371 Domain of unknown function Thewi_2348 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thewi_2348 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thewi_2348 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thewi_2349 PF08240 Alcohol dehydrogenase GroES-like domain Thewi_2349 PF00107 Zinc-binding dehydrogenase Thewi_2350 PF00155 Aminotransferase class I and II Thewi_2351 PF00860 Permease family Thewi_2355 PF01883 Iron-sulfur cluster assembly protein Thewi_2357 PF00158 Sigma-54 interaction domain Thewi_2357 PF02954 Bacterial regulatory protein, Fis family Thewi_2357 PF13426 PAS domain Thewi_2358 PF00676 Dehydrogenase E1 component Thewi_2359 PF02780 Transketolase, C-terminal domain Thewi_2359 PF02779 Transketolase, pyrimidine binding domain Thewi_2360 PF02817 e3 binding domain Thewi_2360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Thewi_2360 PF00364 Biotin-requiring enzyme Thewi_2367 PF03707 Bacterial signalling protein N terminal repeat Thewi_2367 PF00990 Diguanylate cyclase, GGDEF domain Thewi_2367 PF00563 EAL domain Thewi_2378 PF13199 Glycosyl hydrolase family 66 Thewi_2378 PF16990 Carbohydrate binding module (family 35) Thewi_2378 PF03422 Carbohydrate binding module (family 6) Thewi_2383 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thewi_2385 PF01695 IstB-like ATP binding protein Thewi_2386 PF00535 Glycosyl transferase family 2 Thewi_2388 PF00486 Transcriptional regulatory protein, C terminal Thewi_2388 PF00072 Response regulator receiver domain Thewi_2392 PF00990 Diguanylate cyclase, GGDEF domain Thewi_2395 PF01740 STAS domain Thewi_2396 PF01740 STAS domain Thewi_2396 PF08678 Rsbr N terminal Thewi_2397 PF00872 Transposase, Mutator family Thewi_2415 PF00437 Type II/IV secretion system protein Thewi_2419 PF01551 Peptidase family M23 Thewi_2419 PF01476 LysM domain Thewi_2419 PF08525 Opacity-associated protein A N-terminal motif Thewi_2434 PF00072 Response regulator receiver domain Thewi_2438 PF01370 NAD dependent epimerase/dehydratase family Thewi_2448 PF01381 Helix-turn-helix Thewi_2450 PF01761 3-dehydroquinate synthase Thewi_2450 PF02541 Ppx/GppA phosphatase family Thewi_2451 PF00575 S1 RNA binding domain Thewi_2457 PF07873 YabP family Thewi_2458 PF08486 Stage II sporulation protein Thewi_2459 PF01479 S4 domain Thewi_2460 PF00216 Bacterial DNA-binding protein Thewi_2461 PF03819 MazG nucleotide pyrophosphohydrolase domain Thewi_2461 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thewi_2463 PF05977 Transmembrane secretion effector Thewi_2464 PF01926 50S ribosome-binding GTPase Thewi_2464 PF12631 MnmE helical domain Thewi_2464 PF10396 GTP-binding protein TrmE N-terminus Thewi_2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2465 PF00672 HAMP domain Thewi_2465 PF00512 His Kinase A (phospho-acceptor) domain Thewi_2466 PF00486 Transcriptional regulatory protein, C terminal Thewi_2466 PF00072 Response regulator receiver domain Thewi_2467 PF01880 Desulfoferrodoxin Thewi_2467 PF06397 Desulfoferrodoxin, N-terminal domain Thewi_2469 PF00795 Carbon-nitrogen hydrolase Thewi_2475 PF01171 PP-loop family Thewi_2476 PF00899 ThiF family Thewi_2483 PF02424 ApbE family Thewi_2484 PF00348 Polyprenyl synthetase Thewi_2489 PF00210 Ferritin-like domain Thewi_2490 PF00300 Histidine phosphatase superfamily (branch 1) Thewi_2491 PF00583 Acetyltransferase (GNAT) family Thewi_2493 PF09957 Bacterial antitoxin of type II TA system, VapB Thewi_2495 PF05192 MutS domain III Thewi_2495 PF05188 MutS domain II Thewi_2495 PF01624 MutS domain I Thewi_2495 PF05190 MutS family domain IV Thewi_2495 PF00488 MutS domain V Thewi_2496 PF00488 MutS domain V Thewi_2496 PF05190 MutS family domain IV Thewi_2496 PF05192 MutS domain III Thewi_2496 PF01624 MutS domain I Thewi_2496 PF05188 MutS domain II Thewi_2497 PF00654 Voltage gated chloride channel Thewi_2500 PF04542 Sigma-70 region 2 Thewi_2500 PF08281 Sigma-70, region 4 Thewi_2503 PF00005 ABC transporter Thewi_2504 PF00392 Bacterial regulatory proteins, gntR family Thewi_2505 PF01432 Peptidase family M3 Thewi_2505 PF08439 Oligopeptidase F Thewi_2506 PF14698 Argininosuccinate lyase C-terminal Thewi_2506 PF00206 Lyase Thewi_2507 PF00764 Arginosuccinate synthase Thewi_2508 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thewi_2508 PF02142 MGS-like domain Thewi_2508 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thewi_2509 PF00117 Glutamine amidotransferase class-I Thewi_2509 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thewi_2510 PF00202 Aminotransferase class-III Thewi_2511 PF00696 Amino acid kinase family Thewi_2512 PF01960 ArgJ family Thewi_2513 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thewi_2513 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thewi_2517 PF13936 Helix-turn-helix domain Thewi_2518 PF00107 Zinc-binding dehydrogenase Thewi_2518 PF08240 Alcohol dehydrogenase GroES-like domain Thewi_2519 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thewi_2519 PF00175 Oxidoreductase NAD-binding domain Thewi_2520 PF13247 4Fe-4S dicluster domain Thewi_2520 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_2520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thewi_2523 PF02811 PHP domain Thewi_2523 PF14716 Helix-hairpin-helix domain Thewi_2523 PF14791 DNA polymerase beta thumb Thewi_2526 PF00690 Cation transporter/ATPase, N-terminus Thewi_2526 PF00689 Cation transporting ATPase, C-terminus Thewi_2527 PF01569 PAP2 superfamily Thewi_2528 PF09515 Thiamine transporter protein (Thia_YuaJ) Thewi_2529 PF00664 ABC transporter transmembrane region Thewi_2529 PF00005 ABC transporter Thewi_2532 PF14716 Helix-hairpin-helix domain Thewi_2532 PF14791 DNA polymerase beta thumb Thewi_2532 PF02811 PHP domain Thewi_2534 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Thewi_2534 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Thewi_2535 PF00171 Aldehyde dehydrogenase family Thewi_2535 PF00465 Iron-containing alcohol dehydrogenase Thewi_2537 PF00248 Aldo/keto reductase family Thewi_2540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thewi_2541 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_2542 PF12911 N-terminal TM domain of oligopeptide transport permease C Thewi_2542 PF00528 Binding-protein-dependent transport system inner membrane component Thewi_2543 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thewi_2543 PF00005 ABC transporter Thewi_2544 PF00005 ABC transporter Thewi_2544 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thewi_2549 PF00005 ABC transporter Thewi_2552 PF03485 Arginyl tRNA synthetase N terminal domain Thewi_2552 PF00750 tRNA synthetases class I (R) Thewi_2552 PF05746 DALR anticodon binding domain Thewi_2554 PF07478 D-ala D-ala ligase C-terminus Thewi_2554 PF01820 D-ala D-ala ligase N-terminus Thewi_2555 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thewi_2557 PF01471 Putative peptidoglycan binding domain Thewi_2557 PF07486 Cell Wall Hydrolase Thewi_2558 PF09551 Stage II sporulation protein R (spore_II_R) Thewi_2559 PF05504 Spore germination B3/ GerAC like, C-terminal Thewi_2560 PF03845 Spore germination protein Thewi_2561 PF03323 Bacillus/Clostridium GerA spore germination protein Thewi_2564 PF07729 FCD domain Thewi_2564 PF00392 Bacterial regulatory proteins, gntR family Thewi_2565 PF00288 GHMP kinases N terminal domain Thewi_2565 PF08544 GHMP kinases C terminal Thewi_2566 PF01476 LysM domain Thewi_2567 PF06257 Biofilm formation stimulator VEG Thewi_2568 PF05582 YabG peptidase U57 Thewi_2569 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thewi_2569 PF15714 Stage V sporulation protein T C-terminal, transcription factor Thewi_2571 PF00270 DEAD/DEAH box helicase Thewi_2571 PF17757 UvrB interaction domain Thewi_2571 PF03461 TRCF domain Thewi_2571 PF00271 Helicase conserved C-terminal domain Thewi_2571 PF02559 CarD-like/TRCF domain Thewi_2573 PF01195 Peptidyl-tRNA hydrolase Thewi_2574 PF13180 PDZ domain Thewi_2575 PF00672 HAMP domain Thewi_2575 PF00512 His Kinase A (phospho-acceptor) domain Thewi_2575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2576 PF00486 Transcriptional regulatory protein, C terminal Thewi_2576 PF00072 Response regulator receiver domain Thewi_2577 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thewi_2577 PF14572 Phosphoribosyl synthetase-associated domain Thewi_2578 PF00132 Bacterial transferase hexapeptide (six repeats) Thewi_2578 PF12804 MobA-like NTP transferase domain Thewi_2579 PF04026 SpoVG Thewi_2580 PF09182 Bacterial purine repressor, N-terminal Thewi_2580 PF00156 Phosphoribosyl transferase domain Thewi_2581 PF02875 Mur ligase family, glutamate ligase domain Thewi_2581 PF01225 Mur ligase family, catalytic domain Thewi_2581 PF08245 Mur ligase middle domain Thewi_2584 PF00011 Hsp20/alpha crystallin family Thewi_2585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_2585 PF02378 Phosphotransferase system, EIIC Thewi_2586 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thewi_2586 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thewi_2587 PF00294 pfkB family carbohydrate kinase Thewi_2588 PF00455 DeoR C terminal sensor domain Thewi_2588 PF08220 DeoR-like helix-turn-helix domain Thewi_2589 PF00395 S-layer homology domain Thewi_2590 PF11606 Family 31 carbohydrate binding protein Thewi_2593 PF08239 Bacterial SH3 domain Thewi_2593 PF00069 Protein kinase domain Thewi_2596 PF00117 Glutamine amidotransferase class-I Thewi_2596 PF06418 CTP synthase N-terminus Thewi_2597 PF03683 Uncharacterised protein family (UPF0175) Thewi_2599 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thewi_2599 PF00753 Metallo-beta-lactamase superfamily Thewi_2599 PF10996 Beta-Casp domain Thewi_2601 PF01842 ACT domain Thewi_2601 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thewi_2601 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thewi_2602 PF00266 Aminotransferase class-V Thewi_2603 PF02903 Alpha amylase, N-terminal ig-like domain Thewi_2603 PF00128 Alpha amylase, catalytic domain Thewi_2603 PF00395 S-layer homology domain Thewi_2604 PF13180 PDZ domain Thewi_2604 PF01471 Putative peptidoglycan binding domain Thewi_2604 PF03572 Peptidase family S41 Thewi_2605 PF00288 GHMP kinases N terminal domain Thewi_2605 PF08544 GHMP kinases C terminal Thewi_2606 PF00291 Pyridoxal-phosphate dependent enzyme Thewi_2607 PF03447 Homoserine dehydrogenase, NAD binding domain Thewi_2607 PF00742 Homoserine dehydrogenase Thewi_2607 PF01842 ACT domain Thewi_2610 PF13520 Amino acid permease Thewi_2611 PF00753 Metallo-beta-lactamase superfamily Thewi_2612 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_2612 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thewi_2615 PF02796 Helix-turn-helix domain of resolvase Thewi_2615 PF00665 Integrase core domain Thewi_2617 PF09827 CRISPR associated protein Cas2 Thewi_2618 PF01867 CRISPR associated protein Cas1 Thewi_2620 PF03575 Peptidase family S51 Thewi_2629 PF01592 NifU-like N terminal domain Thewi_2630 PF00266 Aminotransferase class-V Thewi_2632 PF01458 Uncharacterized protein family (UPF0051) Thewi_2633 PF00005 ABC transporter Thewi_2634 PF00166 Chaperonin 10 Kd subunit Thewi_2635 PF00462 Glutaredoxin Thewi_2640 PF00579 tRNA synthetases class I (W and Y) Thewi_2640 PF01479 S4 domain Thewi_2641 PF02590 Predicted SPOUT methyltransferase Thewi_2642 PF02590 Predicted SPOUT methyltransferase Thewi_2644 PF13180 PDZ domain Thewi_2645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thewi_2649 PF13426 PAS domain Thewi_2649 PF00512 His Kinase A (phospho-acceptor) domain Thewi_2649 PF00672 HAMP domain Thewi_2649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thewi_2650 PF00486 Transcriptional regulatory protein, C terminal Thewi_2650 PF00072 Response regulator receiver domain Thewi_2654 PF08299 Bacterial dnaA protein helix-turn-helix Thewi_2654 PF00308 Bacterial dnaA protein Thewi_2655 PF01433 Peptidase family M1 domain Thewi_2655 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Thewi_2655 PF11940 Domain of unknown function (DUF3458) Ig-like fold Thewi_2658 PF03772 Competence protein Thewi_2658 PF13567 Domain of unknown function (DUF4131) Thewi_2658 PF00753 Metallo-beta-lactamase superfamily Thewi_2668 PF00709 Adenylosuccinate synthetase Thewi_2670 PF02743 Cache domain Thewi_2670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thewi_2670 PF00672 HAMP domain Thewi_2672 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thewi_2672 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thewi_2673 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thewi_2673 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thewi_2674 PF09587 Bacterial capsule synthesis protein PGA_cap Thewi_2675 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thewi_2676 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thewi_2676 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thewi_2676 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thewi_2676 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thewi_2677 PF01432 Peptidase family M3 Thewi_2677 PF08439 Oligopeptidase F Thewi_2678 PF13649 Methyltransferase domain Thewi_2679 PF00005 ABC transporter Thewi_2683 PF00664 ABC transporter transmembrane region Thewi_2683 PF00005 ABC transporter Thewi_2691 PF00664 ABC transporter transmembrane region Thewi_2691 PF00005 ABC transporter Thewi_2695 PF13545 Crp-like helix-turn-helix domain Thewi_2695 PF00027 Cyclic nucleotide-binding domain Thewi_2696 PF03796 DnaB-like helicase C terminal domain Thewi_2696 PF00772 DnaB-like helicase N terminal domain Thewi_2702 PF01084 Ribosomal protein S18 Thewi_2703 PF00436 Single-strand binding protein family Thewi_2704 PF01250 Ribosomal protein S6 Thewi_2705 PF06107 Bacterial protein of unknown function (DUF951) Thewi_2706 PF00924 Mechanosensitive ion channel Thewi_2707 PF06866 Protein of unknown function (DUF1256) Thewi_2708 PF08245 Mur ligase middle domain Thewi_2708 PF08443 RimK-like ATP-grasp domain Thewi_2708 PF02875 Mur ligase family, glutamate ligase domain Thewi_2709 PF03575 Peptidase family S51 Thewi_2710 PF00781 Diacylglycerol kinase catalytic domain Thewi_2712 PF00266 Aminotransferase class-V Thewi_2713 PF17762 HTH domain found in ParB protein Thewi_2713 PF02195 ParB-like nuclease domain Thewi_2714 PF13614 AAA domain Thewi_2715 PF02195 ParB-like nuclease domain Thewi_2715 PF17762 HTH domain found in ParB protein Thewi_2717 PF02527 rRNA small subunit methyltransferase G Thewi_2718 PF13932 GidA associated domain Thewi_2718 PF01134 Glucose inhibited division protein A Thewi_2719 PF12631 MnmE helical domain Thewi_2719 PF01926 50S ribosome-binding GTPase Thewi_2719 PF10396 GTP-binding protein TrmE N-terminus Thewi_2720 PF14804 Jag N-terminus Thewi_2720 PF01424 R3H domain Thewi_2721 PF02096 60Kd inner membrane protein Thewi_2722 PF01809 Putative membrane protein insertion efficiency factor Thewi_2723 PF00825 Ribonuclease P