Thewi_0001 SM00382 ATPases associated with a variety of cellular activities Thewi_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Thewi_0002 SM00480 DNA polymerase III beta subunit Thewi_0003 SM00363 S4 RNA-binding domain Thewi_0010 SM00387 Histidine kinase-like ATPases Thewi_0010 SM00433 TopoisomeraseII Thewi_0011 SM00434 DNA Topoisomerase IV Thewi_0014 SM00881 CoA binding domain Thewi_0018 SM01329 Thewi_0018 Thewi_0058 SM00091 PAS domain Thewi_0058 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0058 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_0059 SM00382 ATPases associated with a variety of cellular activities Thewi_0061 SM00493 Thewi_0061 Thewi_0064 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_0069 SM00363 S4 RNA-binding domain Thewi_0070 SM00354 helix_turn _helix lactose operon repressor Thewi_0084 SM00060 Fibronectin type 3 domain Thewi_0084 SM00632 Thewi_0084 Thewi_0084 SM00642 Alpha-amylase domain Thewi_0084 SM01065 Starch binding domain Thewi_0088 SM00986 Uracil DNA glycosylase superfamily Thewi_0088 SM00987 UreE urease accessory protein, C-terminal domain Thewi_0116 SM00966 SpoVT / AbrB like domain Thewi_0123 SM01208 Thewi_0123 Thewi_0124 SM00650 Ribosomal RNA adenine dimethylases Thewi_0133 SM00382 ATPases associated with a variety of cellular activities Thewi_0147 SM00448 cheY-homologous receiver domain Thewi_0149 SM00357 Cold shock protein domain Thewi_0149 SM00382 ATPases associated with a variety of cellular activities Thewi_0149 SM00959 Rho termination factor, N-terminal domain Thewi_0157 SM00226 Low molecular weight phosphatase family Thewi_0167 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Thewi_0167 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Thewi_0170 SM00060 Fibronectin type 3 domain Thewi_0170 SM00429 ig-like, plexins, transcription factors Thewi_0188 SM00382 ATPases associated with a variety of cellular activities Thewi_0191 SM01007 Class II Aldolase and Adducin N-terminal domain Thewi_0202 SM00858 Thewi_0202 Thewi_0204 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Thewi_0209 SM00382 ATPases associated with a variety of cellular activities Thewi_0233 SM00344 helix_turn_helix ASNC type Thewi_0237 SM00344 helix_turn_helix ASNC type Thewi_0239 SM00899 Thewi_0239 Thewi_0243 SM00382 ATPases associated with a variety of cellular activities Thewi_0254 SM00382 ATPases associated with a variety of cellular activities Thewi_0285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0285 SM00387 Histidine kinase-like ATPases Thewi_0286 SM00342 helix_turn_helix, arabinose operon control protein Thewi_0286 SM00448 cheY-homologous receiver domain Thewi_0289 SM00382 ATPases associated with a variety of cellular activities Thewi_0304 SM00861 Transketolase, pyrimidine binding domain Thewi_0332 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thewi_0348 SM00382 ATPases associated with a variety of cellular activities Thewi_0361 SM00382 ATPases associated with a variety of cellular activities Thewi_0370 SM01130 Thewi_0370 Thewi_0375 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thewi_0377 SM00382 ATPases associated with a variety of cellular activities Thewi_0384 SM00382 ATPases associated with a variety of cellular activities Thewi_0385 SM00852 Probable molybdopterin binding domain Thewi_0386 SM00852 Probable molybdopterin binding domain Thewi_0387 SM00852 Probable molybdopterin binding domain Thewi_0388 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_0397 SM00287 Bacterial SH3 domain homologues Thewi_0397 SM00854 Bacterial capsule synthesis protein PGA_cap Thewi_0401 SM00354 helix_turn _helix lactose operon repressor Thewi_0406 SM00382 ATPases associated with a variety of cellular activities Thewi_0407 SM00382 ATPases associated with a variety of cellular activities Thewi_0411 SM00382 ATPases associated with a variety of cellular activities Thewi_0414 SM00382 ATPases associated with a variety of cellular activities Thewi_0428 SM00981 Thewi_0428 Thewi_0431 SM00382 ATPases associated with a variety of cellular activities Thewi_0448 SM01004 Delta-aminolevulinic acid dehydratase Thewi_0451 SM00966 SpoVT / AbrB like domain Thewi_0458 SM00244 prohibitin homologues Thewi_0462 SM01329 Thewi_0462 Thewi_0464 SM00382 ATPases associated with a variety of cellular activities Thewi_0467 SM00421 helix_turn_helix, Lux Regulon Thewi_0490 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thewi_0500 SM00890 Domain of unknown function Thewi_0502 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_0505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_0505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0505 SM01049 Thewi_0505 Thewi_0507 SM01221 Thewi_0507 Thewi_0507 SM01222 Thewi_0507 Thewi_0515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0516 SM00342 helix_turn_helix, arabinose operon control protein Thewi_0516 SM00448 cheY-homologous receiver domain Thewi_0519 SM00382 ATPases associated with a variety of cellular activities Thewi_0522 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thewi_0522 SM00866 Thewi_0522 Thewi_0525 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Thewi_0530 SM01061 CAT RNA binding domain Thewi_0549 SM00354 helix_turn _helix lactose operon repressor Thewi_0550 SM00448 cheY-homologous receiver domain Thewi_0550 SM00862 Transcriptional regulatory protein, C terminal Thewi_0551 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0551 SM00387 Histidine kinase-like ATPases Thewi_0551 SM00388 His Kinase A (phosphoacceptor) domain Thewi_0552 SM00909 Sporulation and spore germination Thewi_0558 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_0558 SM00382 ATPases associated with a variety of cellular activities Thewi_0573 SM00382 ATPases associated with a variety of cellular activities Thewi_0576 SM00382 ATPases associated with a variety of cellular activities Thewi_0578 SM00028 Tetratricopeptide repeats Thewi_0585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_0585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0587 SM00062 Bacterial periplasmic substrate-binding proteins Thewi_0587 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Thewi_0589 SM00382 ATPases associated with a variety of cellular activities Thewi_0592 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_0596 SM00957 SecA DEAD-like domain Thewi_0596 SM00958 SecA preprotein cross-linking domain Thewi_0614 SM00881 CoA binding domain Thewi_0617 SM00893 Electron transfer flavoprotein domain Thewi_0618 SM00893 Electron transfer flavoprotein domain Thewi_0623 SM00382 ATPases associated with a variety of cellular activities Thewi_0627 SM00382 ATPases associated with a variety of cellular activities Thewi_0628 SM00382 ATPases associated with a variety of cellular activities Thewi_0636 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_0639 SM00448 cheY-homologous receiver domain Thewi_0639 SM00850 LytTr DNA-binding domain Thewi_0640 SM00387 Histidine kinase-like ATPases Thewi_0641 SM00793 Accessory gene regulator B Thewi_0646 SM00478 endonuclease III Thewi_0656 SM00382 ATPases associated with a variety of cellular activities Thewi_0663 SM00883 Chaperonin 10 Kd subunit Thewi_0666 SM00116 Domain in cystathionine beta-synthase and other proteins. Thewi_0666 SM01240 Thewi_0666 Thewi_0669 SM01001 AIR carboxylase Thewi_0672 SM01211 Thewi_0672 Thewi_0677 SM00798 AICARFT/IMPCHase bienzyme Thewi_0677 SM00851 MGS-like domain Thewi_0678 SM01209 Thewi_0678 Thewi_0678 SM01210 Thewi_0678 Thewi_0683 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_0683 SM00876 Biotin and Thiamin Synthesis associated domain Thewi_0691 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_0691 SM00292 breast cancer carboxy-terminal domain Thewi_0691 SM00532 Ligase N family Thewi_0694 SM00845 GatB domain Thewi_0700 SM00382 ATPases associated with a variety of cellular activities Thewi_0704 SM00646 Thewi_0704 Thewi_0711 SM00052 Putative diguanylate phosphodiesterase Thewi_0711 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thewi_0711 SM00091 PAS domain Thewi_0711 SM00267 diguanylate cyclase Thewi_0713 SM01230 Thewi_0713 Thewi_0715 SM00938 Nitrogen regulatory protein P-II Thewi_0731 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Thewi_0731 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Thewi_0732 SM00382 ATPases associated with a variety of cellular activities Thewi_0733 SM00382 ATPases associated with a variety of cellular activities Thewi_0741 SM00382 ATPases associated with a variety of cellular activities Thewi_0741 SM00994 ClpX C4-type zinc finger Thewi_0741 SM01086 C-terminal, D2-small domain, of ClpB protein Thewi_0742 SM00382 ATPases associated with a variety of cellular activities Thewi_0742 SM00464 Found in ATP-dependent protease La (LON) Thewi_0751 SM00382 ATPases associated with a variety of cellular activities Thewi_0757 SM00382 ATPases associated with a variety of cellular activities Thewi_0759 SM00028 Tetratricopeptide repeats Thewi_0760 SM01321 Thewi_0760 Thewi_0764 SM00382 ATPases associated with a variety of cellular activities Thewi_0771 SM00984 UDP binding domain Thewi_0823 SM00382 ATPases associated with a variety of cellular activities Thewi_0831 SM01119 Thewi_0831 Thewi_0835 SM00670 Large family of predicted nucleotide-binding domains Thewi_0846 SM00849 Metallo-beta-lactamase superfamily Thewi_0846 SM01027 Beta-Casp domain Thewi_0854 SM00534 ATPase domain of DNA mismatch repair MUTS family Thewi_0858 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thewi_0858 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thewi_0867 SM00831 Cation transporter/ATPase, N-terminus Thewi_0868 SM00562 Thewi_0868 Thewi_0873 SM00014 Acid phosphatase homologues Thewi_0877 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_0877 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_0879 SM01001 AIR carboxylase Thewi_0882 SM00448 cheY-homologous receiver domain Thewi_0882 SM00862 Transcriptional regulatory protein, C terminal Thewi_0896 SM00354 helix_turn _helix lactose operon repressor Thewi_0903 SM00354 helix_turn _helix lactose operon repressor Thewi_0909 SM00382 ATPases associated with a variety of cellular activities Thewi_0910 SM00257 Lysin motif Thewi_0916 SM01130 Thewi_0916 Thewi_0917 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thewi_0919 SM00382 ATPases associated with a variety of cellular activities Thewi_0920 SM00382 ATPases associated with a variety of cellular activities Thewi_0922 SM01230 Thewi_0922 Thewi_0923 SM00448 cheY-homologous receiver domain Thewi_0923 SM01012 Thewi_0923 Thewi_0935 SM00382 ATPases associated with a variety of cellular activities Thewi_0949 SM00636 Thewi_0949 Thewi_0957 SM00448 cheY-homologous receiver domain Thewi_0957 SM00850 LytTr DNA-binding domain Thewi_0958 SM00387 Histidine kinase-like ATPases Thewi_0966 SM00287 Bacterial SH3 domain homologues Thewi_0967 SM00838 Elongation factor G C-terminus Thewi_0975 SM00481 DNA polymerase alpha chain like domain Thewi_0977 SM00387 Histidine kinase-like ATPases Thewi_0979 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thewi_0980 SM00902 Iron hydrogenase small subunit Thewi_0980 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thewi_0992 SM00851 MGS-like domain Thewi_0995 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_0997 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_1008 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_1015 SM00936 Penicillin-binding protein 5, C-terminal domain Thewi_1016 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_1023 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thewi_1029 SM00849 Metallo-beta-lactamase superfamily Thewi_1030 SM00849 Metallo-beta-lactamase superfamily Thewi_1039 SM00838 Elongation factor G C-terminus Thewi_1040 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1044 SM00271 DnaJ molecular chaperone homology domain Thewi_1047 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1051 SM00870 Thewi_1051 Thewi_1055 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_1057 SM00014 Acid phosphatase homologues Thewi_1060 SM01133 Thewi_1060 Thewi_1064 SM00116 Domain in cystathionine beta-synthase and other proteins. Thewi_1067 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_1068 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_1068 SM00357 Cold shock protein domain Thewi_1068 SM00955 Thewi_1068 Thewi_1074 SM00419 helix_turn_helix, cAMP Regulatory protein Thewi_1083 SM00382 ATPases associated with a variety of cellular activities Thewi_1085 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1088 SM00506 Appr-1"-p processing enzyme Thewi_1095 SM00849 Metallo-beta-lactamase superfamily Thewi_1096 SM00226 Low molecular weight phosphatase family Thewi_1098 SM01350 Thewi_1098 Thewi_1110 SM00448 cheY-homologous receiver domain Thewi_1110 SM00862 Transcriptional regulatory protein, C terminal Thewi_1111 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_1111 SM00387 Histidine kinase-like ATPases Thewi_1111 SM00388 His Kinase A (phosphoacceptor) domain Thewi_1113 SM00257 Lysin motif Thewi_1117 SM00448 cheY-homologous receiver domain Thewi_1117 SM00862 Transcriptional regulatory protein, C terminal Thewi_1118 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_1118 SM00387 Histidine kinase-like ATPases Thewi_1118 SM00388 His Kinase A (phosphoacceptor) domain Thewi_1127 SM00382 ATPases associated with a variety of cellular activities Thewi_1136 SM00382 ATPases associated with a variety of cellular activities Thewi_1147 SM00881 CoA binding domain Thewi_1152 SM00260 Two component signalling adaptor domain Thewi_1155 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_1156 SM00382 ATPases associated with a variety of cellular activities Thewi_1161 SM01323 Thewi_1161 Thewi_1168 SM00220 Serine/Threonine protein kinases, catalytic domain Thewi_1171 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_1171 SM00954 Region found in RelA / SpoT proteins Thewi_1173 SM00849 Metallo-beta-lactamase superfamily Thewi_1175 SM00382 ATPases associated with a variety of cellular activities Thewi_1177 SM00347 helix_turn_helix multiple antibiotic resistance protein Thewi_1196 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thewi_1198 SM00732 Likely ribonuclease with RNase H fold. Thewi_1201 SM00849 Metallo-beta-lactamase superfamily Thewi_1211 SM00382 ATPases associated with a variety of cellular activities Thewi_1212 SM00382 ATPases associated with a variety of cellular activities Thewi_1221 SM00842 Cell division protein FtsA Thewi_1225 SM00518 AP endonuclease family 2 Thewi_1226 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thewi_1230 SM00841 Elongation factor P, C-terminal Thewi_1230 SM01185 Thewi_1230 Thewi_1232 SM00382 ATPases associated with a variety of cellular activities Thewi_1247 SM00861 Transketolase, pyrimidine binding domain Thewi_1248 SM00363 S4 RNA-binding domain Thewi_1253 SM00448 cheY-homologous receiver domain Thewi_1264 SM00936 Penicillin-binding protein 5, C-terminal domain Thewi_1266 SM00387 Histidine kinase-like ATPases Thewi_1282 SM00936 Penicillin-binding protein 5, C-terminal domain Thewi_1286 SM00363 S4 RNA-binding domain Thewi_1291 SM00257 Lysin motif Thewi_1299 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thewi_1301 SM00855 Phosphoglycerate mutase family Thewi_1306 SM00563 Phosphate acyltransferases Thewi_1308 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_1311 SM00138 Methyltransferase, chemotaxis proteins Thewi_1312 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1313 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thewi_1313 SM00534 ATPase domain of DNA mismatch repair MUTS family Thewi_1321 SM00382 ATPases associated with a variety of cellular activities Thewi_1322 SM00998 Adenylosuccinate lyase C-terminus Thewi_1324 SM00481 DNA polymerase alpha chain like domain Thewi_1327 SM00322 K homology RNA-binding domain Thewi_1327 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_1331 SM00382 ATPases associated with a variety of cellular activities Thewi_1332 SM00852 Probable molybdopterin binding domain Thewi_1334 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1343 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_1343 SM00322 K homology RNA-binding domain Thewi_1344 SM01387 Thewi_1344 Thewi_1352 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_1354 SM00479 Thewi_1354 Thewi_1354 SM00481 DNA polymerase alpha chain like domain Thewi_1357 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thewi_1371 SM00260 Two component signalling adaptor domain Thewi_1372 SM00073 Histidine Phosphotransfer domain Thewi_1372 SM00260 Two component signalling adaptor domain Thewi_1372 SM00387 Histidine kinase-like ATPases Thewi_1372 SM01231 Thewi_1372 Thewi_1376 SM00382 ATPases associated with a variety of cellular activities Thewi_1376 SM00962 SRP54-type protein, GTPase domain Thewi_1383 SM00448 cheY-homologous receiver domain Thewi_1394 SM00382 ATPases associated with a variety of cellular activities Thewi_1404 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Thewi_1404 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Thewi_1404 SM00493 Thewi_1404 Thewi_1410 SM00382 ATPases associated with a variety of cellular activities Thewi_1417 SM00382 ATPases associated with a variety of cellular activities Thewi_1417 SM00962 SRP54-type protein, GTPase domain Thewi_1417 SM00963 SRP54-type protein, helical bundle domain Thewi_1419 SM00382 ATPases associated with a variety of cellular activities Thewi_1419 SM00962 SRP54-type protein, GTPase domain Thewi_1419 SM00963 SRP54-type protein, helical bundle domain Thewi_1420 SM00968 SMC proteins Flexible Hinge Domain Thewi_1423 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1424 SM00358 Double-stranded RNA binding motif Thewi_1424 SM00535 Ribonuclease III family Thewi_1425 SM00825 Beta-ketoacyl synthase Thewi_1426 SM00823 Phosphopantetheine attachment site Thewi_1427 SM00822 Thewi_1427 Thewi_1428 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thewi_1445 SM00487 DEAD-like helicases superfamily Thewi_1445 SM00490 helicase superfamily c-terminal domain Thewi_1446 SM01120 Thewi_1446 Thewi_1446 SM01121 Thewi_1446 Thewi_1450 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Thewi_1453 SM00220 Serine/Threonine protein kinases, catalytic domain Thewi_1453 SM00740 Thewi_1453 Thewi_1454 SM00331 Sigma factor PP2C-like phosphatases Thewi_1454 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thewi_1461 SM00487 DEAD-like helicases superfamily Thewi_1461 SM00490 helicase superfamily c-terminal domain Thewi_1463 SM01409 Thewi_1463 Thewi_1464 SM00072 Guanylate kinase homologues. Thewi_1473 SM00382 ATPases associated with a variety of cellular activities Thewi_1473 SM00930 Thewi_1473 Thewi_1478 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thewi_1483 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Thewi_1488 SM00363 S4 RNA-binding domain Thewi_1506 SM00460 Transglutaminase/protease-like homologues Thewi_1513 SM00382 ATPases associated with a variety of cellular activities Thewi_1529 SM01007 Class II Aldolase and Adducin N-terminal domain Thewi_1534 SM00363 S4 RNA-binding domain Thewi_1543 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Thewi_1544 SM00460 Transglutaminase/protease-like homologues Thewi_1557 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thewi_1562 SM00382 ATPases associated with a variety of cellular activities Thewi_1563 SM00347 helix_turn_helix multiple antibiotic resistance protein Thewi_1571 SM00448 cheY-homologous receiver domain Thewi_1576 SM01207 Thewi_1576 Thewi_1586 SM00382 ATPases associated with a variety of cellular activities Thewi_1591 SM00448 cheY-homologous receiver domain Thewi_1591 SM00862 Transcriptional regulatory protein, C terminal Thewi_1598 SM00864 Tubulin/FtsZ family, GTPase domain Thewi_1598 SM00865 Tubulin/FtsZ family, C-terminal domain Thewi_1599 SM00842 Cell division protein FtsA Thewi_1610 SM00740 Thewi_1610 Thewi_1621 SM00981 Thewi_1621 Thewi_1629 SM00861 Transketolase, pyrimidine binding domain Thewi_1633 SM00091 PAS domain Thewi_1633 SM00382 ATPases associated with a variety of cellular activities Thewi_1634 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1642 SM00421 helix_turn_helix, Lux Regulon Thewi_1642 SM00448 cheY-homologous receiver domain Thewi_1643 SM00387 Histidine kinase-like ATPases Thewi_1646 SM00463 Small MutS-related domain Thewi_1646 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thewi_1646 SM00534 ATPase domain of DNA mismatch repair MUTS family Thewi_1647 SM00733 Mitochondrial termination factor repeats Thewi_1649 SM00873 B3/4 domain Thewi_1649 SM00874 tRNA synthetase B5 domain Thewi_1649 SM00896 Ferredoxin-fold anticodon binding domain Thewi_1659 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thewi_1663 SM00267 diguanylate cyclase Thewi_1663 SM00448 cheY-homologous receiver domain Thewi_1666 SM00357 Cold shock protein domain Thewi_1671 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thewi_1676 SM00636 Thewi_1676 Thewi_1682 SM00400 zinc finger Thewi_1682 SM00493 Thewi_1682 Thewi_1683 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_1685 SM01192 Thewi_1685 Thewi_1685 SM01193 Thewi_1685 Thewi_1689 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thewi_1696 SM01208 Thewi_1696 Thewi_1697 SM00478 endonuclease III Thewi_1697 SM00525 Thewi_1697 Thewi_1704 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_1704 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_1715 SM00382 ATPases associated with a variety of cellular activities Thewi_1720 SM00831 Cation transporter/ATPase, N-terminus Thewi_1724 SM00858 Thewi_1724 Thewi_1732 SM01130 Thewi_1732 Thewi_1734 SM00481 DNA polymerase alpha chain like domain Thewi_1737 SM00861 Transketolase, pyrimidine binding domain Thewi_1740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thewi_1740 SM00382 ATPases associated with a variety of cellular activities Thewi_1748 SM00910 Thewi_1748 Thewi_1749 SM01207 Thewi_1749 Thewi_1765 SM01018 B12 binding domain Thewi_1774 SM00917 LeuA allosteric (dimerisation) domain Thewi_1777 SM00116 Domain in cystathionine beta-synthase and other proteins. Thewi_1777 SM00382 ATPases associated with a variety of cellular activities Thewi_1778 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thewi_1780 SM00419 helix_turn_helix, cAMP Regulatory protein Thewi_1789 SM00481 DNA polymerase alpha chain like domain Thewi_1790 SM00116 Domain in cystathionine beta-synthase and other proteins. Thewi_1794 SM00642 Alpha-amylase domain Thewi_1801 SM00632 Thewi_1801 Thewi_1801 SM00642 Alpha-amylase domain Thewi_1804 SM00481 DNA polymerase alpha chain like domain Thewi_1823 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thewi_1823 SM00091 PAS domain Thewi_1823 SM00267 diguanylate cyclase Thewi_1832 SM00899 Thewi_1832 Thewi_1833 SM00899 Thewi_1833 Thewi_1836 SM00382 ATPases associated with a variety of cellular activities Thewi_1841 SM00729 Elongator protein 3, MiaB family, Radical SAM Thewi_1841 SM00876 Biotin and Thiamin Synthesis associated domain Thewi_1844 SM00849 Metallo-beta-lactamase superfamily Thewi_1856 SM00354 helix_turn _helix lactose operon repressor Thewi_1858 SM00640 Glycosyl hydrolases family 32 Thewi_1871 SM00382 ATPases associated with a variety of cellular activities Thewi_1880 SM00420 helix_turn_helix, Deoxyribose operon repressor Thewi_1880 SM01134 Thewi_1880 Thewi_1888 SM00382 ATPases associated with a variety of cellular activities Thewi_1898 SM00419 helix_turn_helix, cAMP Regulatory protein Thewi_1912 SM00382 ATPases associated with a variety of cellular activities Thewi_1913 SM01350 Thewi_1913 Thewi_1917 SM00420 helix_turn_helix, Deoxyribose operon repressor Thewi_1917 SM01134 Thewi_1917 Thewi_1925 SM00354 helix_turn _helix lactose operon repressor Thewi_1935 SM00481 DNA polymerase alpha chain like domain Thewi_1938 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_1938 SM00465 GIY-YIG type nucleases (URI domain) Thewi_1941 SM00240 Forkhead associated domain Thewi_1942 SM00382 ATPases associated with a variety of cellular activities Thewi_1943 SM00487 DEAD-like helicases superfamily Thewi_1943 SM00490 helicase superfamily c-terminal domain Thewi_1945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thewi_1946 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thewi_1946 SM00245 tail specific protease Thewi_1949 SM00382 ATPases associated with a variety of cellular activities Thewi_1951 SM00382 ATPases associated with a variety of cellular activities Thewi_1956 SM00382 ATPases associated with a variety of cellular activities Thewi_1960 SM00909 Sporulation and spore germination Thewi_1974 SM00091 PAS domain Thewi_1976 SM00829 Enoylreductase Thewi_1992 SM00842 Cell division protein FtsA Thewi_1995 SM00382 ATPases associated with a variety of cellular activities Thewi_2001 SM00849 Metallo-beta-lactamase superfamily Thewi_2003 SM01120 Thewi_2003 Thewi_2042 SM00382 ATPases associated with a variety of cellular activities Thewi_2043 SM01068 Putative carbohydrate binding domain Thewi_2046 SM00422 helix_turn_helix, mercury resistance Thewi_2046 SM00857 Resolvase, N terminal domain Thewi_2061 SM00861 Transketolase, pyrimidine binding domain Thewi_2071 SM01005 Alanine racemase, C-terminal domain Thewi_2077 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2085 SM00382 ATPases associated with a variety of cellular activities Thewi_2100 SM00354 helix_turn _helix lactose operon repressor Thewi_2114 SM01018 B12 binding domain Thewi_2115 SM00342 helix_turn_helix, arabinose operon control protein Thewi_2123 SM00382 ATPases associated with a variety of cellular activities Thewi_2134 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thewi_2134 SM00866 Thewi_2134 Thewi_2138 SM00849 Metallo-beta-lactamase superfamily Thewi_2142 SM00257 Lysin motif Thewi_2143 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Thewi_2154 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2155 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2159 SM00493 Thewi_2159 Thewi_2168 SM00487 DEAD-like helicases superfamily Thewi_2168 SM00490 helicase superfamily c-terminal domain Thewi_2177 SM00563 Phosphate acyltransferases Thewi_2187 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thewi_2200 SM00646 Thewi_2200 Thewi_2201 SM00257 Lysin motif Thewi_2209 SM00073 Histidine Phosphotransfer domain Thewi_2210 SM00260 Two component signalling adaptor domain Thewi_2210 SM00387 Histidine kinase-like ATPases Thewi_2210 SM01231 Thewi_2210 Thewi_2211 SM00448 cheY-homologous receiver domain Thewi_2212 SM00138 Methyltransferase, chemotaxis proteins Thewi_2214 SM00448 cheY-homologous receiver domain Thewi_2215 SM00260 Two component signalling adaptor domain Thewi_2216 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_2217 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_2219 SM00831 Cation transporter/ATPase, N-terminus Thewi_2224 SM00382 ATPases associated with a variety of cellular activities Thewi_2225 SM00382 ATPases associated with a variety of cellular activities Thewi_2227 SM00662 RNA polymerases D Thewi_2228 SM00363 S4 RNA-binding domain Thewi_2228 SM01390 Thewi_2228 Thewi_2232 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_2244 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thewi_2245 SM01374 Thewi_2245 Thewi_2249 SM00322 K homology RNA-binding domain Thewi_2252 SM01382 Thewi_2252 Thewi_2252 SM01383 Thewi_2252 Thewi_2256 SM01403 Thewi_2256 Thewi_2258 SM00838 Elongation factor G C-terminus Thewi_2258 SM00889 Elongation factor G, domain IV Thewi_2262 SM00663 RNA polymerase I subunit A N-terminus Thewi_2267 SM00649 Ribosomal protein L11/L12 Thewi_2268 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thewi_2268 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thewi_2274 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thewi_2276 SM00840 Thewi_2276 Thewi_2284 SM00670 Large family of predicted nucleotide-binding domains Thewi_2286 SM00382 ATPases associated with a variety of cellular activities Thewi_2288 SM00529 Helix-turn-helix diphteria tox regulatory element Thewi_2289 SM00382 ATPases associated with a variety of cellular activities Thewi_2289 SM01086 C-terminal, D2-small domain, of ClpB protein Thewi_2294 SM00919 Malic enzyme, NAD binding domain Thewi_2294 SM01274 Thewi_2294 Thewi_2295 SM00838 Elongation factor G C-terminus Thewi_2295 SM00889 Elongation factor G, domain IV Thewi_2301 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thewi_2301 SM00267 diguanylate cyclase Thewi_2333 SM00091 PAS domain Thewi_2333 SM00387 Histidine kinase-like ATPases Thewi_2333 SM00388 His Kinase A (phosphoacceptor) domain Thewi_2334 SM00382 ATPases associated with a variety of cellular activities Thewi_2336 SM00977 TilS substrate C-terminal domain Thewi_2338 SM00331 Sigma factor PP2C-like phosphatases Thewi_2344 SM00382 ATPases associated with a variety of cellular activities Thewi_2348 SM00890 Domain of unknown function Thewi_2349 SM00829 Enoylreductase Thewi_2357 SM00091 PAS domain Thewi_2357 SM00382 ATPases associated with a variety of cellular activities Thewi_2359 SM00861 Transketolase, pyrimidine binding domain Thewi_2367 SM00052 Putative diguanylate phosphodiesterase Thewi_2367 SM00267 diguanylate cyclase Thewi_2385 SM00382 ATPases associated with a variety of cellular activities Thewi_2387 SM00567 E-Z type HEAT repeats Thewi_2388 SM00267 diguanylate cyclase Thewi_2388 SM00448 cheY-homologous receiver domain Thewi_2392 SM00267 diguanylate cyclase Thewi_2393 SM00331 Sigma factor PP2C-like phosphatases Thewi_2394 SM00387 Histidine kinase-like ATPases Thewi_2399 SM00382 ATPases associated with a variety of cellular activities Thewi_2417 SM00858 Thewi_2417 Thewi_2434 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thewi_2447 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2448 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2451 SM00316 Ribosomal protein S1-like RNA-binding domain Thewi_2459 SM00363 S4 RNA-binding domain Thewi_2460 SM00411 bacterial (prokaryotic) histone like domain Thewi_2462 SM00028 Tetratricopeptide repeats Thewi_2462 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2464 SM00173 Ras subfamily of RAS small GTPases Thewi_2465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_2465 SM00387 Histidine kinase-like ATPases Thewi_2465 SM00388 His Kinase A (phosphoacceptor) domain Thewi_2466 SM00448 cheY-homologous receiver domain Thewi_2466 SM00862 Transcriptional regulatory protein, C terminal Thewi_2481 SM00900 Thewi_2481 Thewi_2490 SM00855 Phosphoglycerate mutase family Thewi_2495 SM00534 ATPase domain of DNA mismatch repair MUTS family Thewi_2496 SM00534 ATPase domain of DNA mismatch repair MUTS family Thewi_2503 SM00382 ATPases associated with a variety of cellular activities Thewi_2504 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thewi_2508 SM00851 MGS-like domain Thewi_2508 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thewi_2509 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Thewi_2513 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thewi_2518 SM00829 Enoylreductase Thewi_2523 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_2523 SM00481 DNA polymerase alpha chain like domain Thewi_2523 SM00483 DNA polymerase X family Thewi_2526 SM00831 Cation transporter/ATPase, N-terminus Thewi_2527 SM00014 Acid phosphatase homologues Thewi_2529 SM00382 ATPases associated with a variety of cellular activities Thewi_2532 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thewi_2532 SM00481 DNA polymerase alpha chain like domain Thewi_2532 SM00483 DNA polymerase X family Thewi_2543 SM00382 ATPases associated with a variety of cellular activities Thewi_2544 SM00382 ATPases associated with a variety of cellular activities Thewi_2546 SM01321 Thewi_2546 Thewi_2549 SM00382 ATPases associated with a variety of cellular activities Thewi_2552 SM00836 DALR anticodon binding domain Thewi_2552 SM01016 Arginyl tRNA synthetase N terminal dom Thewi_2564 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thewi_2564 SM00895 Thewi_2564 Thewi_2566 SM00257 Lysin motif Thewi_2569 SM00966 SpoVT / AbrB like domain Thewi_2571 SM00487 DEAD-like helicases superfamily Thewi_2571 SM00490 helicase superfamily c-terminal domain Thewi_2571 SM00982 Thewi_2571 Thewi_2571 SM01058 CarD-like/TRCF domain Thewi_2574 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thewi_2575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_2575 SM00387 Histidine kinase-like ATPases Thewi_2575 SM00388 His Kinase A (phosphoacceptor) domain Thewi_2576 SM00448 cheY-homologous receiver domain Thewi_2576 SM00862 Transcriptional regulatory protein, C terminal Thewi_2577 SM01400 Thewi_2577 Thewi_2582 SM00354 helix_turn _helix lactose operon repressor Thewi_2588 SM00420 helix_turn_helix, Deoxyribose operon repressor Thewi_2588 SM01134 Thewi_2588 Thewi_2593 SM00287 Bacterial SH3 domain homologues Thewi_2594 SM00670 Large family of predicted nucleotide-binding domains Thewi_2599 SM00849 Metallo-beta-lactamase superfamily Thewi_2599 SM01027 Beta-Casp domain Thewi_2603 SM00635 Bacterial Ig-like domain 2 Thewi_2604 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thewi_2604 SM00245 tail specific protease Thewi_2611 SM00849 Metallo-beta-lactamase superfamily Thewi_2622 SM00487 DEAD-like helicases superfamily Thewi_2622 SM00490 helicase superfamily c-terminal domain Thewi_2628 SM00636 Thewi_2628 Thewi_2633 SM00382 ATPases associated with a variety of cellular activities Thewi_2634 SM00883 Chaperonin 10 Kd subunit Thewi_2640 SM00363 S4 RNA-binding domain Thewi_2644 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thewi_2649 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_2649 SM00387 Histidine kinase-like ATPases Thewi_2649 SM00388 His Kinase A (phosphoacceptor) domain Thewi_2650 SM00448 cheY-homologous receiver domain Thewi_2650 SM00862 Transcriptional regulatory protein, C terminal Thewi_2654 SM00382 ATPases associated with a variety of cellular activities Thewi_2658 SM00849 Metallo-beta-lactamase superfamily Thewi_2667 SM00746 metallochaperone-like domain Thewi_2668 SM00788 Adenylosuccinate synthetase Thewi_2670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thewi_2670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thewi_2674 SM00854 Bacterial capsule synthesis protein PGA_cap Thewi_2679 SM00382 ATPases associated with a variety of cellular activities Thewi_2683 SM00382 ATPases associated with a variety of cellular activities Thewi_2686 SM00028 Tetratricopeptide repeats Thewi_2686 SM00530 Helix-turn-helix XRE-family like proteins Thewi_2691 SM00382 ATPases associated with a variety of cellular activities Thewi_2695 SM00100 Cyclic nucleotide-monophosphate binding domain Thewi_2695 SM00419 helix_turn_helix, cAMP Regulatory protein Thewi_2696 SM00382 ATPases associated with a variety of cellular activities Thewi_2710 SM00046 Diacylglycerol kinase catalytic domain (presumed) Thewi_2713 SM00470 ParB-like nuclease domain Thewi_2715 SM00470 ParB-like nuclease domain Thewi_2718 SM01228 Thewi_2718 Thewi_2720 SM00393 Putative single-stranded nucleic acids-binding domain Thewi_2720 SM01245 Thewi_2720 Thewi_2722 SM01234 Thewi_2722