locus-tag class description Tthe_0001 PF11638 DnaA N-terminal domain Tthe_0001 PF08299 Bacterial dnaA protein helix-turn-helix Tthe_0001 PF00308 Bacterial dnaA protein Tthe_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Tthe_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Tthe_0002 PF02767 DNA polymerase III beta subunit, central domain Tthe_0004 PF02463 RecF/RecN/SMC N terminal domain Tthe_0006 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tthe_0007 PF08353 Domain of unknown function (DUF1727) Tthe_0007 PF08245 Mur ligase middle domain Tthe_0008 PF00204 DNA gyrase B Tthe_0008 PF00986 DNA gyrase B subunit, carboxyl terminus Tthe_0008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_0008 PF01751 Toprim domain Tthe_0009 PF00521 DNA gyrase/topoisomerase IV, subunit A Tthe_0009 PF03989 DNA gyrase C-terminal domain, beta-propeller Tthe_0012 PF10369 Small subunit of acetolactate synthase Tthe_0013 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Tthe_0013 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Tthe_0014 PF00682 HMGL-like Tthe_0015 PF00330 Aconitase family (aconitate hydratase) Tthe_0016 PF00694 Aconitase C-terminal domain Tthe_0017 PF00180 Isocitrate/isopropylmalate dehydrogenase Tthe_0018 PF00920 Dehydratase family Tthe_0019 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tthe_0019 PF00205 Thiamine pyrophosphate enzyme, central domain Tthe_0019 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Tthe_0020 PF01872 RibD C-terminal domain Tthe_0020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tthe_0021 PF00677 Lumazine binding domain Tthe_0022 PF00925 GTP cyclohydrolase II Tthe_0022 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Tthe_0023 PF00885 6,7-dimethyl-8-ribityllumazine synthase Tthe_0024 PF01594 AI-2E family transporter Tthe_0026 PF10502 Signal peptidase, peptidase S26 Tthe_0027 PF02403 Seryl-tRNA synthetase N-terminal domain Tthe_0027 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tthe_0029 PF03816 Cell envelope-related transcriptional attenuator domain Tthe_0030 PF03699 Uncharacterised protein family (UPF0182) Tthe_0035 PF04055 Radical SAM superfamily Tthe_0035 PF13186 Iron-sulfur cluster-binding domain Tthe_0036 PF04055 Radical SAM superfamily Tthe_0036 PF13186 Iron-sulfur cluster-binding domain Tthe_0047 PF14437 MafB19-like deaminase Tthe_0048 PF02371 Transposase IS116/IS110/IS902 family Tthe_0048 PF01548 Transposase Tthe_0049 PF01966 HD domain Tthe_0050 PF12169 DNA polymerase III subunits gamma and tau domain III Tthe_0051 PF02575 YbaB/EbfC DNA-binding family Tthe_0052 PF13662 Toprim domain Tthe_0052 PF02132 RecR protein Tthe_0052 PF00633 Helix-hairpin-helix motif Tthe_0054 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Tthe_0055 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Tthe_0056 PF01966 HD domain Tthe_0062 PF00483 Nucleotidyl transferase Tthe_0065 PF00849 RNA pseudouridylate synthase Tthe_0065 PF01479 S4 domain Tthe_0067 PF04055 Radical SAM superfamily Tthe_0068 PF00753 Metallo-beta-lactamase superfamily Tthe_0068 PF16123 Hydroxyacylglutathione hydrolase C-terminus Tthe_0069 PF05681 Fumarate hydratase (Fumerase) Tthe_0071 PF03167 Uracil DNA glycosylase superfamily Tthe_0072 PF00480 ROK family Tthe_0073 PF03352 Methyladenine glycosylase Tthe_0073 PF13302 Acetyltransferase (GNAT) domain Tthe_0073 PF00117 Glutamine amidotransferase class-I Tthe_0073 PF00958 GMP synthase C terminal domain Tthe_0073 PF13673 Acetyltransferase (GNAT) domain Tthe_0076 PF01276 Orn/Lys/Arg decarboxylase, major domain Tthe_0076 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tthe_0077 PF02223 Thymidylate kinase Tthe_0078 PF06153 Cyclic-di-AMP receptor Tthe_0081 PF04468 PSP1 C-terminal conserved region Tthe_0083 PF01925 Sulfite exporter TauE/SafE Tthe_0086 PF05175 Methyltransferase small domain Tthe_0087 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_0088 PF01545 Cation efflux family Tthe_0088 PF16916 Dimerisation domain of Zinc Transporter Tthe_0089 PF18277 AbrB C-terminal domain Tthe_0089 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Tthe_0090 PF07670 Nucleoside recognition Tthe_0091 PF07670 Nucleoside recognition Tthe_0092 PF01966 HD domain Tthe_0092 PF12627 Probable RNA and SrmB- binding site of polymerase A Tthe_0092 PF01743 Poly A polymerase head domain Tthe_0093 PF09334 tRNA synthetases class I (M) Tthe_0093 PF08264 Anticodon-binding domain of tRNA Tthe_0093 PF01588 Putative tRNA binding domain Tthe_0094 PF00392 Bacterial regulatory proteins, gntR family Tthe_0095 PF00005 ABC transporter Tthe_0104 PF13181 Tetratricopeptide repeat Tthe_0107 PF01026 TatD related DNase Tthe_0109 PF06725 3D domain Tthe_0109 PF03990 G5-linked-Ubiquitin-like domain Tthe_0109 PF07501 G5 domain Tthe_0110 PF00398 Ribosomal RNA adenine dimethylase Tthe_0114 PF01883 Iron-sulfur cluster assembly protein Tthe_0114 PF10609 NUBPL iron-transfer P-loop NTPase Tthe_0117 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_0117 PF17862 AAA+ lid domain Tthe_0117 PF06480 FtsH Extracellular Tthe_0117 PF01434 Peptidase family M41 Tthe_0118 PF13244 Domain of unknown function (DUF4040) Tthe_0118 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tthe_0118 PF00361 Proton-conducting membrane transporter Tthe_0120 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Tthe_0122 PF00374 Nickel-dependent hydrogenase Tthe_0122 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Tthe_0123 PF12838 4Fe-4S dicluster domain Tthe_0124 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Tthe_0125 PF02492 CobW/HypB/UreG, nucleotide-binding domain Tthe_0126 PF07503 HypF finger Tthe_0126 PF01300 Telomere recombination Tthe_0126 PF17788 HypF Kae1-like domain Tthe_0126 PF00708 Acylphosphatase Tthe_0127 PF01455 HupF/HypC family Tthe_0128 PF01924 Hydrogenase formation hypA family Tthe_0129 PF02769 AIR synthase related protein, C-terminal domain Tthe_0129 PF00586 AIR synthase related protein, N-terminal domain Tthe_0130 PF01471 Putative peptidoglycan binding domain Tthe_0130 PF07486 Cell Wall Hydrolase Tthe_0132 PF00271 Helicase conserved C-terminal domain Tthe_0132 PF00270 DEAD/DEAH box helicase Tthe_0134 PF02156 Glycosyl hydrolase family 26 Tthe_0134 PF03425 Carbohydrate binding domain (family 11) Tthe_0136 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0137 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0138 PF04041 beta-1,4-mannooligosaccharide phosphorylase Tthe_0140 PF16875 Glycosyl hydrolase family 36 N-terminal domain Tthe_0140 PF16874 Glycosyl hydrolase family 36 C-terminal domain Tthe_0141 PF00392 Bacterial regulatory proteins, gntR family Tthe_0141 PF07702 UTRA domain Tthe_0142 PF00005 ABC transporter Tthe_0144 PF13419 Haloacid dehalogenase-like hydrolase Tthe_0146 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tthe_0146 PF13187 4Fe-4S dicluster domain Tthe_0146 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tthe_0147 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tthe_0147 PF00175 Oxidoreductase NAD-binding domain Tthe_0148 PF17179 4Fe-4S dicluster domain Tthe_0167 PF00701 Dihydrodipicolinate synthetase family Tthe_0170 PF13171 Protein of unknown function (DUF4004) Tthe_0173 PF00011 Hsp20/alpha crystallin family Tthe_0188 PF00011 Hsp20/alpha crystallin family Tthe_0190 PF00356 Bacterial regulatory proteins, lacI family Tthe_0191 PF02875 Mur ligase family, glutamate ligase domain Tthe_0191 PF08245 Mur ligase middle domain Tthe_0191 PF01225 Mur ligase family, catalytic domain Tthe_0192 PF00156 Phosphoribosyl transferase domain Tthe_0192 PF09182 Bacterial purine repressor, N-terminal Tthe_0193 PF04026 SpoVG Tthe_0194 PF00132 Bacterial transferase hexapeptide (six repeats) Tthe_0194 PF12804 MobA-like NTP transferase domain Tthe_0195 PF14572 Phosphoribosyl synthetase-associated domain Tthe_0195 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Tthe_0196 PF00072 Response regulator receiver domain Tthe_0196 PF00486 Transcriptional regulatory protein, C terminal Tthe_0197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_0197 PF00672 HAMP domain Tthe_0197 PF00512 His Kinase A (phospho-acceptor) domain Tthe_0198 PF13180 PDZ domain Tthe_0199 PF01195 Peptidyl-tRNA hydrolase Tthe_0201 PF02559 CarD-like/TRCF domain Tthe_0201 PF00270 DEAD/DEAH box helicase Tthe_0201 PF00271 Helicase conserved C-terminal domain Tthe_0201 PF03461 TRCF domain Tthe_0201 PF17757 UvrB interaction domain Tthe_0203 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Tthe_0203 PF15714 Stage V sporulation protein T C-terminal, transcription factor Tthe_0204 PF05582 YabG peptidase U57 Tthe_0205 PF06257 Biofilm formation stimulator VEG Tthe_0207 PF08544 GHMP kinases C terminal Tthe_0207 PF00288 GHMP kinases N terminal domain Tthe_0208 PF07729 FCD domain Tthe_0208 PF00392 Bacterial regulatory proteins, gntR family Tthe_0211 PF03323 Bacillus/Clostridium GerA spore germination protein Tthe_0212 PF03845 Spore germination protein Tthe_0213 PF05504 Spore germination B3/ GerAC like, C-terminal Tthe_0214 PF09551 Stage II sporulation protein R (spore_II_R) Tthe_0215 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tthe_0215 PF01276 Orn/Lys/Arg decarboxylase, major domain Tthe_0216 PF07486 Cell Wall Hydrolase Tthe_0216 PF01471 Putative peptidoglycan binding domain Tthe_0217 PF14620 YpeB sporulation Tthe_0217 PF03413 Peptidase propeptide and YPEB domain Tthe_0218 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tthe_0219 PF01820 D-ala D-ala ligase N-terminus Tthe_0219 PF07478 D-ala D-ala ligase C-terminus Tthe_0221 PF03485 Arginyl tRNA synthetase N terminal domain Tthe_0221 PF00750 tRNA synthetases class I (R) Tthe_0221 PF05746 DALR anticodon binding domain Tthe_0223 PF13732 Domain of unknown function (DUF4162) Tthe_0223 PF00005 ABC transporter Tthe_0225 PF13520 Amino acid permease Tthe_0226 PF01212 Beta-eliminating lyase Tthe_0227 PF00248 Aldo/keto reductase family Tthe_0229 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Tthe_0229 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Tthe_0230 PF09515 Thiamine transporter protein (Thia_YuaJ) Tthe_0231 PF04101 Glycosyltransferase family 28 C-terminal domain Tthe_0231 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Tthe_0232 PF01569 PAP2 superfamily Tthe_0235 PF00271 Helicase conserved C-terminal domain Tthe_0235 PF00176 SNF2 family N-terminal domain Tthe_0235 PF04434 SWIM zinc finger Tthe_0240 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tthe_0240 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tthe_0241 PF01960 ArgJ family Tthe_0242 PF00696 Amino acid kinase family Tthe_0243 PF00202 Aminotransferase class-III Tthe_0244 PF00117 Glutamine amidotransferase class-I Tthe_0244 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Tthe_0245 PF02142 MGS-like domain Tthe_0245 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tthe_0245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Tthe_0246 PF00764 Arginosuccinate synthase Tthe_0247 PF00206 Lyase Tthe_0247 PF14698 Argininosuccinate lyase C-terminal Tthe_0248 PF01022 Bacterial regulatory protein, arsR family Tthe_0249 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_0249 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tthe_0250 PF09335 SNARE associated Golgi protein Tthe_0253 PF01566 Natural resistance-associated macrophage protein Tthe_0254 PF01880 Desulfoferrodoxin Tthe_0254 PF06397 Desulfoferrodoxin, N-terminal domain Tthe_0255 PF10415 Fumarase C C-terminus Tthe_0255 PF00206 Lyase Tthe_0257 PF07690 Major Facilitator Superfamily Tthe_0259 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_0259 PF03819 MazG nucleotide pyrophosphohydrolase domain Tthe_0260 PF00216 Bacterial DNA-binding protein Tthe_0261 PF01479 S4 domain Tthe_0262 PF08486 Stage II sporulation protein Tthe_0263 PF07873 YabP family Tthe_0265 PF07085 DRTGG domain Tthe_0265 PF02833 DHHA2 domain Tthe_0265 PF01368 DHH family Tthe_0265 PF00571 CBS domain Tthe_0268 PF00575 S1 RNA binding domain Tthe_0269 PF02541 Ppx/GppA phosphatase family Tthe_0269 PF01761 3-dehydroquinate synthase Tthe_0270 PF00239 Resolvase, N terminal domain Tthe_0270 PF02796 Helix-turn-helix domain of resolvase Tthe_0272 PF01381 Helix-turn-helix Tthe_0281 PF00437 Type II/IV secretion system protein Tthe_0305 PF01476 LysM domain Tthe_0305 PF08525 Opacity-associated protein A N-terminal motif Tthe_0305 PF01551 Peptidase family M23 Tthe_0315 PF08453 Peptidase family M9 N-terminal Tthe_0315 PF01752 Collagenase Tthe_0315 PF18496 Collagenase G catalytic helper subdomain Tthe_0322 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tthe_0324 PF02371 Transposase IS116/IS110/IS902 family Tthe_0324 PF01548 Transposase Tthe_0327 PF07516 SecA Wing and Scaffold domain Tthe_0327 PF01043 SecA preprotein cross-linking domain Tthe_0327 PF02810 SEC-C motif Tthe_0327 PF07517 SecA DEAD-like domain Tthe_0328 PF02558 Ketopantoate reductase PanE/ApbA Tthe_0328 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Tthe_0330 PF01520 N-acetylmuramoyl-L-alanine amidase Tthe_0332 PF00860 Permease family Tthe_0335 PF00005 ABC transporter Tthe_0336 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tthe_0337 PF00440 Bacterial regulatory proteins, tetR family Tthe_0337 PF08359 YsiA-like protein, C-terminal region Tthe_0338 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Tthe_0338 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tthe_0338 PF10371 Domain of unknown function Tthe_0338 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tthe_0338 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tthe_0344 PF00005 ABC transporter Tthe_0346 PF04542 Sigma-70 region 2 Tthe_0346 PF08281 Sigma-70, region 4 Tthe_0349 PF05167 Uncharacterised ACR (DUF711) Tthe_0352 PF13847 Methyltransferase domain Tthe_0354 PF07282 Putative transposase DNA-binding domain Tthe_0354 PF12323 Helix-turn-helix domain Tthe_0354 PF01385 Probable transposase Tthe_0356 PF07228 Stage II sporulation protein E (SpoIIE) Tthe_0359 PF01171 PP-loop family Tthe_0359 PF11734 TilS substrate C-terminal domain Tthe_0361 PF01434 Peptidase family M41 Tthe_0361 PF06480 FtsH Extracellular Tthe_0361 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_0361 PF17862 AAA+ lid domain Tthe_0364 PF13426 PAS domain Tthe_0364 PF13188 PAS domain Tthe_0364 PF00512 His Kinase A (phospho-acceptor) domain Tthe_0364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_0364 PF00989 PAS fold Tthe_0365 PF01268 Formate--tetrahydrofolate ligase Tthe_0367 PF01039 Carboxyl transferase domain Tthe_0369 PF00364 Biotin-requiring enzyme Tthe_0370 PF12822 ECF transporter, substrate-specific component Tthe_0371 PF03309 Type III pantothenate kinase Tthe_0373 PF03323 Bacillus/Clostridium GerA spore germination protein Tthe_0374 PF05504 Spore germination B3/ GerAC like, C-terminal Tthe_0378 PF00202 Aminotransferase class-III Tthe_0379 PF01272 Transcription elongation factor, GreA/GreB, C-term Tthe_0379 PF03449 Transcription elongation factor, N-terminal Tthe_0380 PF01336 OB-fold nucleic acid binding domain Tthe_0380 PF00152 tRNA synthetases class II (D, K and N) Tthe_0381 PF01227 GTP cyclohydrolase I Tthe_0382 PF00809 Pterin binding enzyme Tthe_0383 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tthe_0384 PF01242 6-pyruvoyl tetrahydropterin synthase Tthe_0385 PF03749 Sugar fermentation stimulation protein RE domain Tthe_0385 PF17746 SfsA N-terminal OB domain Tthe_0386 PF05979 Bacterial protein of unknown function (DUF896) Tthe_0388 PF00202 Aminotransferase class-III Tthe_0390 PF03477 ATP cone domain Tthe_0390 PF02867 Ribonucleotide reductase, barrel domain Tthe_0390 PF00317 Ribonucleotide reductase, all-alpha domain Tthe_0391 PF00990 Diguanylate cyclase, GGDEF domain Tthe_0393 PF02896 PEP-utilising enzyme, TIM barrel domain Tthe_0393 PF00391 PEP-utilising enzyme, mobile domain Tthe_0393 PF05524 PEP-utilising enzyme, N-terminal Tthe_0394 PF03144 Elongation factor Tu domain 2 Tthe_0394 PF14492 Elongation Factor G, domain II Tthe_0394 PF03764 Elongation factor G, domain IV Tthe_0394 PF00009 Elongation factor Tu GTP binding domain Tthe_0394 PF00679 Elongation factor G C-terminus Tthe_0395 PF00390 Malic enzyme, N-terminal domain Tthe_0395 PF03949 Malic enzyme, NAD binding domain Tthe_0397 PF17727 CtsR C-terminal dimerization domain Tthe_0397 PF05848 CtsR N-terminal HTH domain Tthe_0398 PF02151 UvrB/uvrC motif Tthe_0399 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Tthe_0400 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_0400 PF07724 AAA domain (Cdc48 subfamily) Tthe_0400 PF17871 AAA lid domain Tthe_0400 PF02861 Clp amino terminal domain, pathogenicity island component Tthe_0400 PF10431 C-terminal, D2-small domain, of ClpB protein Tthe_0401 PF18073 Rubredoxin metal binding domain Tthe_0404 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tthe_0406 PF02542 YgbB family Tthe_0407 PF03129 Anticodon binding domain Tthe_0407 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tthe_0407 PF04073 Aminoacyl-tRNA editing domain Tthe_0409 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tthe_0410 PF00132 Bacterial transferase hexapeptide (six repeats) Tthe_0411 PF09190 DALR domain Tthe_0411 PF01406 tRNA synthetases class I (C) catalytic domain Tthe_0412 PF00636 Ribonuclease III domain Tthe_0413 PF00588 SpoU rRNA Methylase family Tthe_0413 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tthe_0414 PF05991 YacP-like NYN domain Tthe_0415 PF04542 Sigma-70 region 2 Tthe_0415 PF08281 Sigma-70, region 4 Tthe_0416 PF00009 Elongation factor Tu GTP binding domain Tthe_0416 PF03144 Elongation factor Tu domain 2 Tthe_0416 PF03143 Elongation factor Tu C-terminal domain Tthe_0418 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Tthe_0419 PF00467 KOW motif Tthe_0419 PF02357 Transcription termination factor nusG Tthe_0420 PF00298 Ribosomal protein L11, RNA binding domain Tthe_0420 PF03946 Ribosomal protein L11, N-terminal domain Tthe_0421 PF00687 Ribosomal protein L1p/L10e family Tthe_0422 PF00466 Ribosomal protein L10 Tthe_0423 PF16320 Ribosomal protein L7/L12 dimerisation domain Tthe_0423 PF00542 Ribosomal protein L7/L12 C-terminal domain Tthe_0424 PF04560 RNA polymerase Rpb2, domain 7 Tthe_0424 PF04561 RNA polymerase Rpb2, domain 2 Tthe_0424 PF00562 RNA polymerase Rpb2, domain 6 Tthe_0424 PF10385 RNA polymerase beta subunit external 1 domain Tthe_0424 PF04565 RNA polymerase Rpb2, domain 3 Tthe_0424 PF04563 RNA polymerase beta subunit Tthe_0425 PF04983 RNA polymerase Rpb1, domain 3 Tthe_0425 PF00623 RNA polymerase Rpb1, domain 2 Tthe_0425 PF05000 RNA polymerase Rpb1, domain 4 Tthe_0425 PF04997 RNA polymerase Rpb1, domain 1 Tthe_0425 PF04998 RNA polymerase Rpb1, domain 5 Tthe_0426 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Tthe_0427 PF00164 Ribosomal protein S12/S23 Tthe_0428 PF00177 Ribosomal protein S7p/S5e Tthe_0429 PF03144 Elongation factor Tu domain 2 Tthe_0429 PF03764 Elongation factor G, domain IV Tthe_0429 PF00009 Elongation factor Tu GTP binding domain Tthe_0429 PF14492 Elongation Factor G, domain II Tthe_0429 PF00679 Elongation factor G C-terminus Tthe_0430 PF03143 Elongation factor Tu C-terminal domain Tthe_0430 PF00009 Elongation factor Tu GTP binding domain Tthe_0430 PF03144 Elongation factor Tu domain 2 Tthe_0431 PF00338 Ribosomal protein S10p/S20e Tthe_0432 PF00297 Ribosomal protein L3 Tthe_0433 PF00573 Ribosomal protein L4/L1 family Tthe_0434 PF00276 Ribosomal protein L23 Tthe_0435 PF03947 Ribosomal Proteins L2, C-terminal domain Tthe_0435 PF00181 Ribosomal Proteins L2, RNA binding domain Tthe_0436 PF00203 Ribosomal protein S19 Tthe_0437 PF00237 Ribosomal protein L22p/L17e Tthe_0438 PF00189 Ribosomal protein S3, C-terminal domain Tthe_0438 PF07650 KH domain Tthe_0439 PF00252 Ribosomal protein L16p/L10e Tthe_0440 PF00831 Ribosomal L29 protein Tthe_0441 PF00366 Ribosomal protein S17 Tthe_0442 PF00238 Ribosomal protein L14p/L23e Tthe_0443 PF00467 KOW motif Tthe_0443 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Tthe_0444 PF00281 Ribosomal protein L5 Tthe_0444 PF00673 ribosomal L5P family C-terminus Tthe_0446 PF00410 Ribosomal protein S8 Tthe_0447 PF00347 Ribosomal protein L6 Tthe_0448 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Tthe_0449 PF03719 Ribosomal protein S5, C-terminal domain Tthe_0449 PF00333 Ribosomal protein S5, N-terminal domain Tthe_0450 PF00327 Ribosomal protein L30p/L7e Tthe_0451 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Tthe_0452 PF00344 SecY translocase Tthe_0453 PF05191 Adenylate kinase, active site lid Tthe_0454 PF00557 Metallopeptidase family M24 Tthe_0456 PF01176 Translation initiation factor 1A / IF-1 Tthe_0457 PF00444 Ribosomal protein L36 Tthe_0458 PF00416 Ribosomal protein S13/S18 Tthe_0459 PF00411 Ribosomal protein S11 Tthe_0460 PF00163 Ribosomal protein S4/S9 N-terminal domain Tthe_0460 PF01479 S4 domain Tthe_0461 PF01000 RNA polymerase Rpb3/RpoA insert domain Tthe_0461 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Tthe_0461 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Tthe_0462 PF01196 Ribosomal protein L17 Tthe_0463 PF00005 ABC transporter Tthe_0464 PF00005 ABC transporter Tthe_0465 PF02361 Cobalt transport protein Tthe_0466 PF01416 tRNA pseudouridine synthase Tthe_0467 PF00572 Ribosomal protein L13 Tthe_0468 PF00380 Ribosomal protein S9/S16 Tthe_0470 PF00005 ABC transporter Tthe_0471 PF00005 ABC transporter Tthe_0471 PF12704 MacB-like periplasmic core domain Tthe_0471 PF02687 FtsX-like permease family Tthe_0472 PF00465 Iron-containing alcohol dehydrogenase Tthe_0473 PF02511 Thymidylate synthase complementing protein Tthe_0477 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_0478 PF01476 LysM domain Tthe_0478 PF05257 CHAP domain Tthe_0479 PF08239 Bacterial SH3 domain Tthe_0479 PF01520 N-acetylmuramoyl-L-alanine amidase Tthe_0480 PF17863 AAA lid domain Tthe_0480 PF07726 ATPase family associated with various cellular activities (AAA) Tthe_0481 PF01882 Protein of unknown function DUF58 Tthe_0482 PF01841 Transglutaminase-like superfamily Tthe_0482 PF11992 Domain of unknown function (DUF3488) Tthe_0482 PF13559 Domain of unknown function (DUF4129) Tthe_0484 PF02457 DisA bacterial checkpoint controller nucleotide-binding Tthe_0491 PF01553 Acyltransferase Tthe_0492 PF11799 impB/mucB/samB family C-terminal domain Tthe_0492 PF00817 impB/mucB/samB family Tthe_0493 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tthe_0493 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tthe_0493 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tthe_0493 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tthe_0494 PF01380 SIS domain Tthe_0504 PF03747 ADP-ribosylglycohydrolase Tthe_0506 PF01381 Helix-turn-helix Tthe_0526 PF00583 Acetyltransferase (GNAT) family Tthe_0529 PF01814 Hemerythrin HHE cation binding domain Tthe_0531 PF13538 UvrD-like helicase C-terminal domain Tthe_0532 PF01894 Uncharacterised protein family UPF0047 Tthe_0535 PF01256 Carbohydrate kinase Tthe_0535 PF03853 YjeF-related protein N-terminus Tthe_0537 PF00842 Alanine racemase, C-terminal domain Tthe_0537 PF01168 Alanine racemase, N-terminal domain Tthe_0539 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Tthe_0543 PF03808 Glycosyl transferase WecB/TagA/CpsF family Tthe_0546 PF02445 Quinolinate synthetase A protein Tthe_0547 PF02910 Fumarate reductase flavoprotein C-term Tthe_0547 PF00890 FAD binding domain Tthe_0548 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Tthe_0548 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Tthe_0549 PF00301 Rubredoxin Tthe_0550 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tthe_0550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tthe_0551 PF17126 RsmF rRNA methyltransferase first C-terminal domain Tthe_0551 PF01189 16S rRNA methyltransferase RsmB/F Tthe_0551 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Tthe_0552 PF10091 Putative glucoamylase Tthe_0552 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Tthe_0552 PF06165 Glycosyltransferase family 36 Tthe_0553 PF00392 Bacterial regulatory proteins, gntR family Tthe_0555 PF10086 YhfC intramembrane metalloprotease Tthe_0556 PF16200 C-terminal region of band_7 Tthe_0556 PF01145 SPFH domain / Band 7 family Tthe_0558 PF13393 Histidyl-tRNA synthetase Tthe_0559 PF01634 ATP phosphoribosyltransferase Tthe_0560 PF00815 Histidinol dehydrogenase Tthe_0561 PF00155 Aminotransferase class I and II Tthe_0562 PF00475 Imidazoleglycerol-phosphate dehydratase Tthe_0563 PF00117 Glutamine amidotransferase class-I Tthe_0564 PF00977 Histidine biosynthesis protein Tthe_0565 PF00977 Histidine biosynthesis protein Tthe_0566 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Tthe_0566 PF01502 Phosphoribosyl-AMP cyclohydrolase Tthe_0567 PF02585 GlcNAc-PI de-N-acetylase Tthe_0568 PF01244 Membrane dipeptidase (Peptidase family M19) Tthe_0569 PF00464 Serine hydroxymethyltransferase Tthe_0570 PF03845 Spore germination protein Tthe_0572 PF00483 Nucleotidyl transferase Tthe_0575 PF01522 Polysaccharide deacetylase Tthe_0577 PF01022 Bacterial regulatory protein, arsR family Tthe_0581 PF02660 Glycerol-3-phosphate acyltransferase Tthe_0582 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tthe_0583 PF01022 Bacterial regulatory protein, arsR family Tthe_0585 PF00230 Major intrinsic protein Tthe_0586 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tthe_0586 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tthe_0587 PF01266 FAD dependent oxidoreductase Tthe_0588 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_0590 PF00158 Sigma-54 interaction domain Tthe_0590 PF02954 Bacterial regulatory protein, Fis family Tthe_0590 PF00989 PAS fold Tthe_0591 PF02733 Dak1 domain Tthe_0592 PF02734 DAK2 domain Tthe_0593 PF03610 PTS system fructose IIA component Tthe_0595 PF00012 Hsp70 protein Tthe_0600 PF01434 Peptidase family M41 Tthe_0600 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_0600 PF17862 AAA+ lid domain Tthe_0602 PF02491 SHS2 domain inserted in FTSA Tthe_0607 PF00005 ABC transporter Tthe_0609 PF01386 Ribosomal L25p family Tthe_0609 PF14693 Ribosomal protein TL5, C-terminal domain Tthe_0610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Tthe_0610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Tthe_0613 PF03459 TOBE domain Tthe_0613 PF17912 MalK OB fold domain Tthe_0613 PF00005 ABC transporter Tthe_0615 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_0615 PF04324 BFD-like [2Fe-2S] binding domain Tthe_0615 PF18267 Rubredoxin NAD+ reductase C-terminal domain Tthe_0615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tthe_0615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tthe_0616 PF00037 4Fe-4S binding domain Tthe_0616 PF13247 4Fe-4S dicluster domain Tthe_0617 PF01645 Conserved region in glutamate synthase Tthe_0617 PF13187 4Fe-4S dicluster domain Tthe_0618 PF00310 Glutamine amidotransferases class-II Tthe_0619 PF17853 GGDEF-like domain Tthe_0619 PF05651 Putative sugar diacid recognition Tthe_0619 PF13556 PucR C-terminal helix-turn-helix domain Tthe_0620 PF00005 ABC transporter Tthe_0621 PF18075 FtsX extracellular domain Tthe_0621 PF02687 FtsX-like permease family Tthe_0622 PF01551 Peptidase family M23 Tthe_0622 PF04225 Opacity-associated protein A LysM-like domain Tthe_0623 PF13180 PDZ domain Tthe_0623 PF03572 Peptidase family S41 Tthe_0624 PF17820 PDZ domain Tthe_0625 PF04029 2-phosphosulpholactate phosphatase Tthe_0626 PF00271 Helicase conserved C-terminal domain Tthe_0626 PF04851 Type III restriction enzyme, res subunit Tthe_0626 PF02151 UvrB/uvrC motif Tthe_0626 PF12344 Ultra-violet resistance protein B Tthe_0626 PF17757 UvrB interaction domain Tthe_0627 PF17755 UvrA DNA-binding domain Tthe_0627 PF17760 UvrA interaction domain Tthe_0628 PF16697 Inner membrane component of T3SS, cytoplasmic domain Tthe_0629 PF01098 Cell cycle protein Tthe_0630 PF00905 Penicillin binding protein transpeptidase domain Tthe_0631 PF08459 UvrC Helix-hairpin-helix N-terminal Tthe_0631 PF02151 UvrB/uvrC motif Tthe_0631 PF01541 GIY-YIG catalytic domain Tthe_0632 PF03099 Biotin/lipoate A/B protein ligase family Tthe_0632 PF02237 Biotin protein ligase C terminal domain Tthe_0632 PF08279 HTH domain Tthe_0633 PF00874 PRD domain Tthe_0633 PF03123 CAT RNA binding domain Tthe_0634 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Tthe_0634 PF02378 Phosphotransferase system, EIIC Tthe_0634 PF00367 phosphotransferase system, EIIB Tthe_0636 PF07475 HPr Serine kinase C-terminal domain Tthe_0636 PF02603 HPr Serine kinase N terminus Tthe_0637 PF02811 PHP domain Tthe_0638 PF00480 ROK family Tthe_0639 PF00501 AMP-binding enzyme Tthe_0639 PF13193 AMP-binding enzyme C-terminal domain Tthe_0640 PF00356 Bacterial regulatory proteins, lacI family Tthe_0641 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tthe_0641 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tthe_0644 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tthe_0644 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tthe_0645 PF00703 Glycosyl hydrolases family 2 Tthe_0645 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain Tthe_0645 PF02837 Glycosyl hydrolases family 2, sugar binding domain Tthe_0646 PF00158 Sigma-54 interaction domain Tthe_0646 PF00874 PRD domain Tthe_0646 PF03610 PTS system fructose IIA component Tthe_0647 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tthe_0648 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Tthe_0649 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_0650 PF02378 Phosphotransferase system, EIIC Tthe_0652 PF00232 Glycosyl hydrolase family 1 Tthe_0654 PF08532 Beta-galactosidase trimerisation domain Tthe_0654 PF02449 Beta-galactosidase Tthe_0654 PF08533 Beta-galactosidase C-terminal domain Tthe_0655 PF13802 Galactose mutarotase-like Tthe_0655 PF01055 Glycosyl hydrolases family 31 Tthe_0656 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Tthe_0658 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0659 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0660 PF01229 Glycosyl hydrolases family 39 Tthe_0661 PF07930 D-aminopeptidase, domain B Tthe_0661 PF00144 Beta-lactamase Tthe_0663 PF07944 Beta-L-arabinofuranosidase, GH127 Tthe_0665 PF16369 C-terminal lipocalin-like domain Tthe_0665 PF04616 Glycosyl hydrolases family 43 Tthe_0666 PF11762 L-arabinose isomerase C-terminal domain Tthe_0666 PF02610 L-arabinose isomerase Tthe_0667 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tthe_0667 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tthe_0668 PF00596 Class II Aldolase and Adducin N-terminal domain Tthe_0670 PF00392 Bacterial regulatory proteins, gntR family Tthe_0671 PF13685 Iron-containing alcohol dehydrogenase Tthe_0677 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tthe_0677 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tthe_0678 PF00288 GHMP kinases N terminal domain Tthe_0678 PF08544 GHMP kinases C terminal Tthe_0678 PF10509 Galactokinase galactose-binding signature Tthe_0679 PF16363 GDP-mannose 4,6 dehydratase Tthe_0680 PF00480 ROK family Tthe_0680 PF01325 Iron dependent repressor, N-terminal DNA binding domain Tthe_0681 PF13180 PDZ domain Tthe_0685 PF13411 MerR HTH family regulatory protein Tthe_0688 PF02441 Flavoprotein Tthe_0691 PF00665 Integrase core domain Tthe_0692 PF01695 IstB-like ATP binding protein Tthe_0695 PF07859 alpha/beta hydrolase fold Tthe_0698 PF01547 Bacterial extracellular solute-binding protein Tthe_0700 PF01522 Polysaccharide deacetylase Tthe_0701 PF02424 ApbE family Tthe_0703 PF03793 PASTA domain Tthe_0703 PF00905 Penicillin binding protein transpeptidase domain Tthe_0703 PF03717 Penicillin-binding Protein dimerisation domain Tthe_0704 PF01068 ATP dependent DNA ligase domain Tthe_0704 PF04679 ATP dependent DNA ligase C terminal region Tthe_0704 PF13298 DNA polymerase Ligase (LigD) Tthe_0705 PF02735 Ku70/Ku80 beta-barrel domain Tthe_0706 PF00877 NlpC/P60 family Tthe_0706 PF01476 LysM domain Tthe_0707 PF04545 Sigma-70, region 4 Tthe_0707 PF04542 Sigma-70 region 2 Tthe_0707 PF00140 Sigma-70 factor, region 1.2 Tthe_0707 PF04539 Sigma-70 region 3 Tthe_0710 PF01757 Acyltransferase family Tthe_0711 PF13520 Amino acid permease Tthe_0715 PF04820 Tryptophan halogenase Tthe_0716 PF00403 Heavy-metal-associated domain Tthe_0717 PF00291 Pyridoxal-phosphate dependent enzyme Tthe_0718 PF05192 MutS domain III Tthe_0718 PF00488 MutS domain V Tthe_0718 PF05190 MutS family domain IV Tthe_0718 PF01624 MutS domain I Tthe_0718 PF05188 MutS domain II Tthe_0719 PF01713 Smr domain Tthe_0719 PF00488 MutS domain V Tthe_0720 PF02811 PHP domain Tthe_0720 PF14791 DNA polymerase beta thumb Tthe_0720 PF14716 Helix-hairpin-helix domain Tthe_0721 PF13847 Methyltransferase domain Tthe_0722 PF01053 Cys/Met metabolism PLP-dependent enzyme Tthe_0723 PF00291 Pyridoxal-phosphate dependent enzyme Tthe_0724 PF01053 Cys/Met metabolism PLP-dependent enzyme Tthe_0726 PF01790 Prolipoprotein diacylglyceryl transferase Tthe_0728 PF01476 LysM domain Tthe_0728 PF01551 Peptidase family M23 Tthe_0732 PF01566 Natural resistance-associated macrophage protein Tthe_0734 PF01209 ubiE/COQ5 methyltransferase family Tthe_0736 PF02683 Cytochrome C biogenesis protein transmembrane region Tthe_0740 PF00512 His Kinase A (phospho-acceptor) domain Tthe_0740 PF00989 PAS fold Tthe_0740 PF13188 PAS domain Tthe_0740 PF13426 PAS domain Tthe_0740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_0741 PF00158 Sigma-54 interaction domain Tthe_0741 PF00072 Response regulator receiver domain Tthe_0741 PF02954 Bacterial regulatory protein, Fis family Tthe_0745 PF00403 Heavy-metal-associated domain Tthe_0747 PF01565 FAD binding domain Tthe_0747 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Tthe_0749 PF03668 P-loop ATPase protein family Tthe_0750 PF01933 Uncharacterised protein family UPF0052 Tthe_0751 PF00128 Alpha amylase, catalytic domain Tthe_0751 PF02903 Alpha amylase, N-terminal ig-like domain Tthe_0751 PF00395 S-layer homology domain Tthe_0752 PF00395 S-layer homology domain Tthe_0752 PF00128 Alpha amylase, catalytic domain Tthe_0752 PF02903 Alpha amylase, N-terminal ig-like domain Tthe_0754 PF13416 Bacterial extracellular solute-binding protein Tthe_0755 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0756 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0757 PF01547 Bacterial extracellular solute-binding protein Tthe_0758 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0759 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0762 PF13464 Domain of unknown function (DUF4115) Tthe_0763 PF02903 Alpha amylase, N-terminal ig-like domain Tthe_0763 PF00128 Alpha amylase, catalytic domain Tthe_0765 PF10298 WhiA N-terminal LAGLIDADG-like domain Tthe_0765 PF14527 WhiA LAGLIDADG-like domain Tthe_0765 PF02650 WhiA C-terminal HTH domain Tthe_0766 PF00381 PTS HPr component phosphorylation site Tthe_0767 PF00571 CBS domain Tthe_0767 PF03061 Thioesterase superfamily Tthe_0767 PF00392 Bacterial regulatory proteins, gntR family Tthe_0767 PF07085 DRTGG domain Tthe_0768 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tthe_0768 PF01336 OB-fold nucleic acid binding domain Tthe_0768 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tthe_0768 PF02811 PHP domain Tthe_0768 PF14579 Helix-hairpin-helix motif Tthe_0770 PF00365 Phosphofructokinase Tthe_0771 PF00224 Pyruvate kinase, barrel domain Tthe_0771 PF00391 PEP-utilising enzyme, mobile domain Tthe_0771 PF02887 Pyruvate kinase, alpha/beta domain Tthe_0773 PF09137 Glucodextranase, domain N Tthe_0773 PF00723 Glycosyl hydrolases family 15 Tthe_0774 PF05958 tRNA (Uracil-5-)-methyltransferase Tthe_0774 PF01938 TRAM domain Tthe_0777 PF18273 Type III R-M EcoP15I C-terminal domain Tthe_0777 PF01555 DNA methylase Tthe_0779 PF00308 Bacterial dnaA protein Tthe_0779 PF08299 Bacterial dnaA protein helix-turn-helix Tthe_0779 PF11638 DnaA N-terminal domain Tthe_0782 PF01555 DNA methylase Tthe_0783 PF01555 DNA methylase Tthe_0791 PF04860 Phage portal protein Tthe_0792 PF00574 Clp protease Tthe_0809 PF05105 Bacteriophage holin family Tthe_0810 PF01510 N-acetylmuramoyl-L-alanine amidase Tthe_0810 PF01476 LysM domain Tthe_0810 PF01471 Putative peptidoglycan binding domain Tthe_0811 PF01476 LysM domain Tthe_0811 PF00877 NlpC/P60 family Tthe_0813 PF00239 Resolvase, N terminal domain Tthe_0813 PF02796 Helix-turn-helix domain of resolvase Tthe_0815 PF13408 Recombinase zinc beta ribbon domain Tthe_0815 PF07508 Recombinase Tthe_0817 PF01022 Bacterial regulatory protein, arsR family Tthe_0818 PF00403 Heavy-metal-associated domain Tthe_0825 PF00881 Nitroreductase family Tthe_0830 PF13307 Helicase C-terminal domain Tthe_0830 PF06733 DEAD_2 Tthe_0831 PF01648 4'-phosphopantetheinyl transferase superfamily Tthe_0832 PF07634 RtxA repeat Tthe_0832 PF12146 Serine aminopeptidase, S33 Tthe_0832 PF16671 Actin cross-linking domain Tthe_0832 PF11713 Peptidase C80 family Tthe_0832 PF11647 Membrane Localization Domain Tthe_0833 PF01546 Peptidase family M20/M25/M40 Tthe_0833 PF07687 Peptidase dimerisation domain Tthe_0834 PF01479 S4 domain Tthe_0834 PF00163 Ribosomal protein S4/S9 N-terminal domain Tthe_0835 PF00881 Nitroreductase family Tthe_0838 PF00342 Phosphoglucose isomerase Tthe_0840 PF10531 SLBB domain Tthe_0840 PF13375 RnfC Barrel sandwich hybrid domain Tthe_0840 PF13237 4Fe-4S dicluster domain Tthe_0840 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tthe_0841 PF03116 NQR2, RnfD, RnfE family Tthe_0842 PF04205 FMN-binding domain Tthe_0843 PF02508 Rnf-Nqr subunit, membrane protein Tthe_0844 PF02508 Rnf-Nqr subunit, membrane protein Tthe_0845 PF00037 4Fe-4S binding domain Tthe_0845 PF13187 4Fe-4S dicluster domain Tthe_0845 PF04060 Putative Fe-S cluster Tthe_0848 PF02574 Homocysteine S-methyltransferase Tthe_0848 PF02219 Methylenetetrahydrofolate reductase Tthe_0849 PF00809 Pterin binding enzyme Tthe_0849 PF02965 Vitamin B12 dependent methionine synthase, activation domain Tthe_0849 PF02310 B12 binding domain Tthe_0849 PF02574 Homocysteine S-methyltransferase Tthe_0849 PF02607 B12 binding domain Tthe_0850 PF05067 Manganese containing catalase Tthe_0851 PF12652 CotJB protein Tthe_0853 PF01938 TRAM domain Tthe_0853 PF05958 tRNA (Uracil-5-)-methyltransferase Tthe_0864 PF00465 Iron-containing alcohol dehydrogenase Tthe_0867 PF03079 ARD/ARD' family Tthe_0870 PF00248 Aldo/keto reductase family Tthe_0875 PF13411 MerR HTH family regulatory protein Tthe_0879 PF01261 Xylose isomerase-like TIM barrel Tthe_0880 PF00753 Metallo-beta-lactamase superfamily Tthe_0881 PF05697 Bacterial trigger factor protein (TF) Tthe_0881 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Tthe_0881 PF05698 Bacterial trigger factor protein (TF) C-terminus Tthe_0882 PF00574 Clp protease Tthe_0883 PF06689 ClpX C4-type zinc finger Tthe_0883 PF07724 AAA domain (Cdc48 subfamily) Tthe_0883 PF10431 C-terminal, D2-small domain, of ClpB protein Tthe_0885 PF05362 Lon protease (S16) C-terminal proteolytic domain Tthe_0885 PF02190 ATP-dependent protease La (LON) substrate-binding domain Tthe_0885 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_0886 PF01926 50S ribosome-binding GTPase Tthe_0887 PF02386 Cation transport protein Tthe_0888 PF02254 TrkA-N domain Tthe_0888 PF02080 TrkA-C domain Tthe_0889 PF00119 ATP synthase A chain Tthe_0890 PF00137 ATP synthase subunit C Tthe_0891 PF00430 ATP synthase B/B' CF(0) Tthe_0892 PF00213 ATP synthase delta (OSCP) subunit Tthe_0893 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tthe_0893 PF00306 ATP synthase alpha/beta chain, C terminal domain Tthe_0893 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tthe_0894 PF00231 ATP synthase Tthe_0895 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tthe_0895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tthe_0896 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Tthe_0896 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Tthe_0899 PF02540 NAD synthase Tthe_0899 PF00795 Carbon-nitrogen hydrolase Tthe_0900 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0901 PF00005 ABC transporter Tthe_0904 PF01680 SOR/SNZ family Tthe_0905 PF01174 SNO glutamine amidotransferase family Tthe_0914 PF00534 Glycosyl transferases group 1 Tthe_0917 PF13439 Glycosyltransferase Family 4 Tthe_0917 PF00534 Glycosyl transferases group 1 Tthe_0921 PF01966 HD domain Tthe_0923 PF02397 Bacterial sugar transferase Tthe_0924 PF16363 GDP-mannose 4,6 dehydratase Tthe_0925 PF01050 Mannose-6-phosphate isomerase Tthe_0925 PF00483 Nucleotidyl transferase Tthe_0927 PF13180 PDZ domain Tthe_0950 PF00270 DEAD/DEAH box helicase Tthe_0950 PF08494 DEAD/H associated Tthe_0950 PF00271 Helicase conserved C-terminal domain Tthe_0962 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tthe_0964 PF00270 DEAD/DEAH box helicase Tthe_0964 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Tthe_0964 PF17191 RecG wedge domain Tthe_0966 PF17179 4Fe-4S dicluster domain Tthe_0967 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tthe_0967 PF00175 Oxidoreductase NAD-binding domain Tthe_0968 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tthe_0968 PF13187 4Fe-4S dicluster domain Tthe_0968 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tthe_0971 PF01964 Radical SAM ThiC family Tthe_0974 PF00392 Bacterial regulatory proteins, gntR family Tthe_0974 PF07729 FCD domain Tthe_0975 PF03786 D-mannonate dehydratase (UxuA) Tthe_0976 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0977 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0979 PF07477 Glycosyl hydrolase family 67 C-terminus Tthe_0979 PF07488 Glycosyl hydrolase family 67 middle domain Tthe_0979 PF03648 Glycosyl hydrolase family 67 N-terminus Tthe_0980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tthe_0980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tthe_0982 PF03512 Glycosyl hydrolase family 52 Tthe_0983 PF01229 Glycosyl hydrolases family 39 Tthe_0984 PF05448 Acetyl xylan esterase (AXE1) Tthe_0985 PF00072 Response regulator receiver domain Tthe_0985 PF00196 Bacterial regulatory proteins, luxR family Tthe_0986 PF06580 Histidine kinase Tthe_0986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_0986 PF07694 5TMR of 5TMR-LYT Tthe_0987 PF02371 Transposase IS116/IS110/IS902 family Tthe_0987 PF01548 Transposase Tthe_0990 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0991 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0995 PF01547 Bacterial extracellular solute-binding protein Tthe_0996 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_0997 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1006 PF00005 ABC transporter Tthe_1010 PF01361 Tautomerase enzyme Tthe_1015 PF04754 Putative transposase, YhgA-like Tthe_1016 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tthe_1016 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Tthe_1016 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tthe_1016 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Tthe_1018 PF00483 Nucleotidyl transferase Tthe_1020 PF03816 Cell envelope-related transcriptional attenuator domain Tthe_1023 PF00690 Cation transporter/ATPase, N-terminus Tthe_1023 PF00689 Cation transporting ATPase, C-terminus Tthe_1025 PF00334 Nucleoside diphosphate kinase Tthe_1027 PF10997 Alternate to MurJ Tthe_1029 PF00753 Metallo-beta-lactamase superfamily Tthe_1029 PF00258 Flavodoxin Tthe_1030 PF04324 BFD-like [2Fe-2S] binding domain Tthe_1030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tthe_1030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Tthe_1030 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_1030 PF18267 Rubredoxin NAD+ reductase C-terminal domain Tthe_1031 PF01569 PAP2 superfamily Tthe_1033 PF01066 CDP-alcohol phosphatidyltransferase Tthe_1034 PF02540 NAD synthase Tthe_1035 PF00731 AIR carboxylase Tthe_1036 PF01969 Protein of unknown function DUF111 Tthe_1037 PF01969 Protein of unknown function DUF111 Tthe_1038 PF02632 BioY family Tthe_1039 PF10458 Valyl tRNA synthetase tRNA binding arm Tthe_1039 PF00133 tRNA synthetases class I (I, L, M and V) Tthe_1039 PF08264 Anticodon-binding domain of tRNA Tthe_1041 PF08245 Mur ligase middle domain Tthe_1041 PF02875 Mur ligase family, glutamate ligase domain Tthe_1046 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tthe_1047 PF08331 Domain of unknown function (DUF1730) Tthe_1051 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1052 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1053 PF03636 Glycosyl hydrolase family 65, N-terminal domain Tthe_1053 PF03632 Glycosyl hydrolase family 65 central catalytic domain Tthe_1053 PF03633 Glycosyl hydrolase family 65, C-terminal domain Tthe_1054 PF13419 Haloacid dehalogenase-like hydrolase Tthe_1055 PF01522 Polysaccharide deacetylase Tthe_1055 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Tthe_1057 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Tthe_1058 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Tthe_1058 PF14602 Hexapeptide repeat of succinyl-transferase Tthe_1058 PF00132 Bacterial transferase hexapeptide (six repeats) Tthe_1059 PF01113 Dihydrodipicolinate reductase, N-terminus Tthe_1059 PF05173 Dihydrodipicolinate reductase, C-terminus Tthe_1060 PF00701 Dihydrodipicolinate synthetase family Tthe_1061 PF01118 Semialdehyde dehydrogenase, NAD binding domain Tthe_1061 PF02774 Semialdehyde dehydrogenase, dimerisation domain Tthe_1064 PF00120 Glutamine synthetase, catalytic domain Tthe_1064 PF03951 Glutamine synthetase, beta-Grasp domain Tthe_1065 PF00072 Response regulator receiver domain Tthe_1065 PF00990 Diguanylate cyclase, GGDEF domain Tthe_1066 PF07478 D-ala D-ala ligase C-terminus Tthe_1066 PF01820 D-ala D-ala ligase N-terminus Tthe_1068 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_1070 PF00348 Polyprenyl synthetase Tthe_1071 PF01979 Amidohydrolase family Tthe_1072 PF00155 Aminotransferase class I and II Tthe_1075 PF00704 Glycosyl hydrolases family 18 Tthe_1077 PF01476 LysM domain Tthe_1077 PF01551 Peptidase family M23 Tthe_1077 PF08525 Opacity-associated protein A N-terminal motif Tthe_1080 PF03698 Uncharacterised protein family (UPF0180) Tthe_1088 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Tthe_1088 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Tthe_1089 PF04260 Protein of unknown function (DUF436) Tthe_1090 PF00027 Cyclic nucleotide-binding domain Tthe_1090 PF13545 Crp-like helix-turn-helix domain Tthe_1091 PF00403 Heavy-metal-associated domain Tthe_1092 PF00403 Heavy-metal-associated domain Tthe_1094 PF01476 LysM domain Tthe_1094 PF00704 Glycosyl hydrolases family 18 Tthe_1095 PF04024 PspC domain Tthe_1096 PF00324 Amino acid permease Tthe_1098 PF01476 LysM domain Tthe_1098 PF03734 L,D-transpeptidase catalytic domain Tthe_1099 PF08281 Sigma-70, region 4 Tthe_1099 PF04542 Sigma-70 region 2 Tthe_1101 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Tthe_1101 PF01367 5'-3' exonuclease, C-terminal SAM fold Tthe_1101 PF00476 DNA polymerase family A Tthe_1102 PF01121 Dephospho-CoA kinase Tthe_1103 PF01464 Transglycosylase SLT domain Tthe_1104 PF04284 Protein of unknown function (DUF441) Tthe_1107 PF00877 NlpC/P60 family Tthe_1109 PF01464 Transglycosylase SLT domain Tthe_1112 PF13581 Histidine kinase-like ATPase domain Tthe_1113 PF04060 Putative Fe-S cluster Tthe_1117 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Tthe_1117 PF17203 Single cache domain 3 Tthe_1117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1119 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Tthe_1119 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tthe_1119 PF00037 4Fe-4S binding domain Tthe_1120 PF02256 Iron hydrogenase small subunit Tthe_1120 PF00037 4Fe-4S binding domain Tthe_1120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tthe_1120 PF02906 Iron only hydrogenase large subunit, C-terminal domain Tthe_1122 PF02545 Maf-like protein Tthe_1123 PF04002 RadC-like JAB domain Tthe_1127 PF00905 Penicillin binding protein transpeptidase domain Tthe_1127 PF03717 Penicillin-binding Protein dimerisation domain Tthe_1128 PF03775 Septum formation inhibitor MinC, C-terminal domain Tthe_1129 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tthe_1130 PF03776 Septum formation topological specificity factor MinE Tthe_1131 PF01098 Cell cycle protein Tthe_1132 PF02142 MGS-like domain Tthe_1133 PF01476 LysM domain Tthe_1133 PF01551 Peptidase family M23 Tthe_1134 PF02163 Peptidase family M50 Tthe_1134 PF00571 CBS domain Tthe_1137 PF10150 Ribonuclease E/G family Tthe_1137 PF00575 S1 RNA binding domain Tthe_1138 PF00829 Ribosomal prokaryotic L21 protein Tthe_1140 PF01016 Ribosomal L27 protein Tthe_1142 PF01926 50S ribosome-binding GTPase Tthe_1142 PF09269 Domain of unknown function (DUF1967) Tthe_1142 PF01018 GTP1/OBG Tthe_1143 PF01467 Cytidylyltransferase-like Tthe_1144 PF01966 HD domain Tthe_1146 PF08348 YheO-like PAS domain Tthe_1146 PF13309 HTH domain Tthe_1147 PF04015 Domain of unknown function (DUF362) Tthe_1148 PF00768 D-alanyl-D-alanine carboxypeptidase Tthe_1148 PF07943 Penicillin-binding protein 5, C-terminal domain Tthe_1149 PF10531 SLBB domain Tthe_1151 PF01625 Peptide methionine sulfoxide reductase Tthe_1152 PF04608 Phosphatidylglycerophosphatase A Tthe_1153 PF00749 tRNA synthetases class I (E and Q), catalytic domain Tthe_1156 PF00465 Iron-containing alcohol dehydrogenase Tthe_1157 PF00175 Oxidoreductase NAD-binding domain Tthe_1157 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tthe_1158 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tthe_1158 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_1159 PF12838 4Fe-4S dicluster domain Tthe_1160 PF01063 Amino-transferase class IV Tthe_1164 PF00689 Cation transporting ATPase, C-terminus Tthe_1164 PF00690 Cation transporter/ATPase, N-terminus Tthe_1166 PF00005 ABC transporter Tthe_1167 PF01047 MarR family Tthe_1170 PF00753 Metallo-beta-lactamase superfamily Tthe_1171 PF00753 Metallo-beta-lactamase superfamily Tthe_1171 PF03772 Competence protein Tthe_1171 PF13567 Domain of unknown function (DUF4131) Tthe_1173 PF01649 Ribosomal protein S20 Tthe_1175 PF03418 Germination protease Tthe_1177 PF01520 N-acetylmuramoyl-L-alanine amidase Tthe_1177 PF08239 Bacterial SH3 domain Tthe_1179 PF00534 Glycosyl transferases group 1 Tthe_1179 PF13477 Glycosyl transferase 4-like Tthe_1181 PF06421 GTP-binding protein LepA C-terminus Tthe_1181 PF00009 Elongation factor Tu GTP binding domain Tthe_1181 PF00679 Elongation factor G C-terminus Tthe_1181 PF03144 Elongation factor Tu domain 2 Tthe_1181 PF14492 Elongation Factor G, domain II Tthe_1182 PF04055 Radical SAM superfamily Tthe_1182 PF06969 HemN C-terminal domain Tthe_1183 PF01628 HrcA protein C terminal domain Tthe_1184 PF01025 GrpE Tthe_1186 PF00012 Hsp70 protein Tthe_1187 PF00226 DnaJ domain Tthe_1187 PF00684 DnaJ central domain Tthe_1187 PF01556 DnaJ C terminal domain Tthe_1189 PF04452 RNA methyltransferase Tthe_1190 PF00919 Uncharacterized protein family UPF0004 Tthe_1190 PF01938 TRAM domain Tthe_1190 PF04055 Radical SAM superfamily Tthe_1191 PF01230 HIT domain Tthe_1192 PF01165 Ribosomal protein S21 Tthe_1193 PF09424 Yqey-like protein Tthe_1194 PF07873 YabP family Tthe_1196 PF02562 PhoH-like protein Tthe_1197 PF01966 HD domain Tthe_1197 PF07698 7TM receptor with intracellular HD hydrolase Tthe_1197 PF07697 7TM-HD extracellular Tthe_1198 PF02130 Uncharacterized protein family UPF0054 Tthe_1199 PF01219 Prokaryotic diacylglycerol kinase Tthe_1200 PF01926 50S ribosome-binding GTPase Tthe_1200 PF07650 KH domain Tthe_1201 PF01791 DeoC/LacD family aldolase Tthe_1202 PF11967 Recombination protein O N terminal Tthe_1202 PF02565 Recombination protein O C terminal Tthe_1204 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tthe_1204 PF03129 Anticodon binding domain Tthe_1205 PF03618 Kinase/pyrophosphorylase Tthe_1206 PF00391 PEP-utilising enzyme, mobile domain Tthe_1206 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Tthe_1206 PF02896 PEP-utilising enzyme, TIM barrel domain Tthe_1209 PF00773 RNB domain Tthe_1209 PF17876 Cold shock domain Tthe_1209 PF00575 S1 RNA binding domain Tthe_1209 PF08206 Ribonuclease B OB domain Tthe_1210 PF01668 SmpB protein Tthe_1211 PF18318 Glutamine synthetase C-terminal domain Tthe_1211 PF12437 Glutamine synthetase type III N terminal Tthe_1211 PF00120 Glutamine synthetase, catalytic domain Tthe_1213 PF12323 Helix-turn-helix domain Tthe_1213 PF07282 Putative transposase DNA-binding domain Tthe_1213 PF01385 Probable transposase Tthe_1216 PF01168 Alanine racemase, N-terminal domain Tthe_1217 PF04472 Cell division protein SepF Tthe_1219 PF17774 Putative RNA-binding domain in YlmH Tthe_1219 PF01479 S4 domain Tthe_1220 PF05103 DivIVA protein Tthe_1222 PF00133 tRNA synthetases class I (I, L, M and V) Tthe_1222 PF08264 Anticodon-binding domain of tRNA Tthe_1222 PF06827 Zinc finger found in FPG and IleRS Tthe_1223 PF01048 Phosphorylase superfamily Tthe_1224 PF01910 Thiamine-binding protein Tthe_1226 PF02885 Glycosyl transferase family, helical bundle domain Tthe_1226 PF00591 Glycosyl transferase family, a/b domain Tthe_1226 PF00117 Glutamine amidotransferase class-I Tthe_1227 PF02885 Glycosyl transferase family, helical bundle domain Tthe_1227 PF00591 Glycosyl transferase family, a/b domain Tthe_1228 PF00218 Indole-3-glycerol phosphate synthase Tthe_1229 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Tthe_1230 PF00291 Pyridoxal-phosphate dependent enzyme Tthe_1231 PF00290 Tryptophan synthase alpha chain Tthe_1232 PF00578 AhpC/TSA family Tthe_1237 PF00072 Response regulator receiver domain Tthe_1243 PF00456 Transketolase, thiamine diphosphate binding domain Tthe_1243 PF02780 Transketolase, C-terminal domain Tthe_1243 PF02779 Transketolase, pyrimidine binding domain Tthe_1245 PF01252 Signal peptidase (SPase) II Tthe_1246 PF00849 RNA pseudouridylate synthase Tthe_1246 PF01479 S4 domain Tthe_1247 PF03129 Anticodon binding domain Tthe_1247 PF13393 Histidyl-tRNA synthetase Tthe_1248 PF01336 OB-fold nucleic acid binding domain Tthe_1248 PF02938 GAD domain Tthe_1248 PF00152 tRNA synthetases class II (D, K and N) Tthe_1249 PF00899 ThiF family Tthe_1250 PF02583 Metal-sensitive transcriptional repressor Tthe_1251 PF00085 Thioredoxin Tthe_1252 PF01255 Putative undecaprenyl diphosphate synthase Tthe_1253 PF05496 Holliday junction DNA helicase RuvB P-loop domain Tthe_1253 PF16193 AAA C-terminal domain Tthe_1253 PF12002 MgsA AAA+ ATPase C terminal Tthe_1254 PF02082 Transcriptional regulator Tthe_1255 PF00266 Aminotransferase class-V Tthe_1261 PF01594 AI-2E family transporter Tthe_1262 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tthe_1262 PF02272 DHHA1 domain Tthe_1262 PF01411 tRNA synthetases class II (A) Tthe_1263 PF06135 IreB regulatory phosphoprotein Tthe_1264 PF03652 Holliday junction resolvase Tthe_1265 PF06949 Protein of unknown function (DUF1292) Tthe_1266 PF01475 Ferric uptake regulator family Tthe_1267 PF00753 Metallo-beta-lactamase superfamily Tthe_1267 PF17770 Ribonuclease J C-terminal domain Tthe_1267 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tthe_1268 PF06133 Control of competence regulator ComK, YlbF/YmcA Tthe_1269 PF02618 YceG-like family Tthe_1272 PF00905 Penicillin binding protein transpeptidase domain Tthe_1272 PF03717 Penicillin-binding Protein dimerisation domain Tthe_1273 PF04545 Sigma-70, region 4 Tthe_1273 PF04542 Sigma-70 region 2 Tthe_1274 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tthe_1274 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Tthe_1276 PF01488 Shikimate / quinate 5-dehydrogenase Tthe_1276 PF08501 Shikimate dehydrogenase substrate binding domain Tthe_1277 PF00437 Type II/IV secretion system protein Tthe_1278 PF00437 Type II/IV secretion system protein Tthe_1279 PF00482 Type II secretion system (T2SS), protein F Tthe_1280 PF07963 Prokaryotic N-terminal methylation motif Tthe_1280 PF00114 Pilin (bacterial filament) Tthe_1281 PF06750 Bacterial Peptidase A24 N-terminal domain Tthe_1281 PF01478 Type IV leader peptidase family Tthe_1290 PF01202 Shikimate kinase Tthe_1291 PF00696 Amino acid kinase family Tthe_1291 PF01472 PUA domain Tthe_1292 PF00171 Aldehyde dehydrogenase family Tthe_1293 PF01220 Dehydroquinase class II Tthe_1294 PF01321 Creatinase/Prolidase N-terminal domain Tthe_1294 PF00557 Metallopeptidase family M24 Tthe_1295 PF01132 Elongation factor P (EF-P) OB domain Tthe_1295 PF09285 Elongation factor P, C-terminal Tthe_1295 PF08207 Elongation factor P (EF-P) KOW-like domain Tthe_1300 PF06686 Stage III sporulation protein AC/AD protein family Tthe_1301 PF09546 Stage III sporulation protein AE (spore_III_AE) Tthe_1302 PF09581 Stage III sporulation protein AF (Spore_III_AF) Tthe_1305 PF03780 Asp23 family, cell envelope-related function Tthe_1308 PF01029 NusB family Tthe_1309 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Tthe_1309 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Tthe_1310 PF13742 OB-fold nucleic acid binding domain Tthe_1310 PF02601 Exonuclease VII, large subunit Tthe_1311 PF02609 Exonuclease VII small subunit Tthe_1312 PF00348 Polyprenyl synthetase Tthe_1314 PF02779 Transketolase, pyrimidine binding domain Tthe_1314 PF02780 Transketolase, C-terminal domain Tthe_1314 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Tthe_1315 PF01479 S4 domain Tthe_1315 PF01728 FtsJ-like methyltransferase Tthe_1316 PF01513 ATP-NAD kinase Tthe_1317 PF01316 Arginine repressor, DNA binding domain Tthe_1317 PF02863 Arginine repressor, C-terminal domain Tthe_1318 PF02463 RecF/RecN/SMC N terminal domain Tthe_1319 PF17820 PDZ domain Tthe_1319 PF05580 SpoIVB peptidase S55 Tthe_1320 PF08769 Sporulation initiation factor Spo0A C terminal Tthe_1320 PF00072 Response regulator receiver domain Tthe_1323 PF00535 Glycosyl transferase family 2 Tthe_1327 PF00293 NUDIX domain Tthe_1329 PF01944 Stage II sporulation protein M Tthe_1330 PF02899 Phage integrase, N-terminal SAM-like domain Tthe_1330 PF00589 Phage integrase family Tthe_1331 PF07943 Penicillin-binding protein 5, C-terminal domain Tthe_1331 PF00768 D-alanyl-D-alanine carboxypeptidase Tthe_1332 PF01740 STAS domain Tthe_1333 PF13581 Histidine kinase-like ATPase domain Tthe_1334 PF04542 Sigma-70 region 2 Tthe_1334 PF04539 Sigma-70 region 3 Tthe_1334 PF04545 Sigma-70, region 4 Tthe_1335 PF07311 Dodecin Tthe_1336 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Tthe_1338 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Tthe_1339 PF12627 Probable RNA and SrmB- binding site of polymerase A Tthe_1339 PF01743 Poly A polymerase head domain Tthe_1339 PF13735 tRNA nucleotidyltransferase domain 2 putative Tthe_1340 PF02163 Peptidase family M50 Tthe_1341 PF02616 Segregation and condensation protein ScpA Tthe_1342 PF04079 Segregation and condensation complex subunit ScpB Tthe_1344 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Tthe_1345 PF00768 D-alanyl-D-alanine carboxypeptidase Tthe_1345 PF07943 Penicillin-binding protein 5, C-terminal domain Tthe_1347 PF13932 GidA associated domain Tthe_1347 PF01134 Glucose inhibited division protein A Tthe_1348 PF00849 RNA pseudouridylate synthase Tthe_1348 PF01479 S4 domain Tthe_1350 PF17284 Spermidine synthase tetramerisation domain Tthe_1351 PF00491 Arginase family Tthe_1352 PF02436 Conserved carboxylase domain Tthe_1352 PF00682 HMGL-like Tthe_1352 PF00364 Biotin-requiring enzyme Tthe_1353 PF01476 LysM domain Tthe_1355 PF01975 Survival protein SurE Tthe_1356 PF01418 Helix-turn-helix domain, rpiR family Tthe_1356 PF01380 SIS domain Tthe_1357 PF00300 Histidine phosphatase superfamily (branch 1) Tthe_1360 PF02224 Cytidylate kinase Tthe_1362 PF02401 LytB protein Tthe_1363 PF00575 S1 RNA binding domain Tthe_1364 PF02675 S-adenosylmethionine decarboxylase Tthe_1365 PF03705 CheR methyltransferase, all-alpha domain Tthe_1365 PF01739 CheR methyltransferase, SAM binding domain Tthe_1366 PF00919 Uncharacterized protein family UPF0004 Tthe_1366 PF01938 TRAM domain Tthe_1366 PF04055 Radical SAM superfamily Tthe_1368 PF01624 MutS domain I Tthe_1368 PF00488 MutS domain V Tthe_1368 PF05190 MutS family domain IV Tthe_1368 PF05192 MutS domain III Tthe_1368 PF05188 MutS domain II Tthe_1369 PF01119 DNA mismatch repair protein, C-terminal domain Tthe_1369 PF08676 MutL C terminal dimerisation domain Tthe_1371 PF17209 Hfq protein Tthe_1372 PF03807 NADP oxidoreductase coenzyme F420-dependent Tthe_1372 PF14748 Pyrroline-5-carboxylate reductase dimerisation Tthe_1373 PF00075 RNase H Tthe_1374 PF00589 Phage integrase family Tthe_1374 PF02899 Phage integrase, N-terminal SAM-like domain Tthe_1375 PF00717 Peptidase S24-like Tthe_1375 PF01726 LexA DNA binding domain Tthe_1376 PF06838 Methionine gamma-lyase Tthe_1377 PF17866 AAA lid domain Tthe_1377 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_1378 PF01336 OB-fold nucleic acid binding domain Tthe_1378 PF00152 tRNA synthetases class II (D, K and N) Tthe_1379 PF10397 Adenylosuccinate lyase C-terminus Tthe_1379 PF00206 Lyase Tthe_1380 PF00155 Aminotransferase class I and II Tthe_1381 PF02811 PHP domain Tthe_1382 PF04232 Stage V sporulation protein S (SpoVS) Tthe_1383 PF13277 YmdB-like protein Tthe_1384 PF00013 KH domain Tthe_1384 PF01966 HD domain Tthe_1384 PF12072 Domain of unknown function (DUF3552) Tthe_1385 PF13476 AAA domain Tthe_1386 PF12320 Type 5 capsule protein repressor C-terminal domain Tthe_1386 PF00149 Calcineurin-like phosphoesterase Tthe_1390 PF02631 RecX family Tthe_1391 PF00154 recA bacterial DNA recombination protein Tthe_1392 PF02464 Competence-damaged protein Tthe_1392 PF18146 Damage-inducible protein CinA KH domain Tthe_1392 PF00994 Probable molybdopterin binding domain Tthe_1393 PF01066 CDP-alcohol phosphatidyltransferase Tthe_1394 PF18693 TRAM domain Tthe_1394 PF04055 Radical SAM superfamily Tthe_1394 PF00919 Uncharacterized protein family UPF0004 Tthe_1395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Tthe_1395 PF17854 FtsK alpha domain Tthe_1395 PF01580 FtsK/SpoIIIE family Tthe_1395 PF09397 Ftsk gamma domain Tthe_1397 PF00574 Clp protease Tthe_1398 PF00696 Amino acid kinase family Tthe_1398 PF13840 ACT domain Tthe_1400 PF00692 dUTPase Tthe_1401 PF00675 Insulinase (Peptidase family M16) Tthe_1401 PF05193 Peptidase M16 inactive domain Tthe_1402 PF01522 Polysaccharide deacetylase Tthe_1403 PF00013 KH domain Tthe_1403 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Tthe_1403 PF03725 3' exoribonuclease family, domain 2 Tthe_1403 PF01138 3' exoribonuclease family, domain 1 Tthe_1403 PF00575 S1 RNA binding domain Tthe_1404 PF00312 Ribosomal protein S15 Tthe_1405 PF06574 FAD synthetase Tthe_1405 PF01687 Riboflavin kinase Tthe_1406 PF01509 TruB family pseudouridylate synthase (N terminal domain) Tthe_1406 PF09157 Pseudouridine synthase II TruB, C-terminal Tthe_1406 PF16198 tRNA pseudouridylate synthase B C-terminal domain Tthe_1407 PF02272 DHHA1 domain Tthe_1407 PF01368 DHH family Tthe_1408 PF02033 Ribosome-binding factor A Tthe_1409 PF04760 Translation initiation factor IF-2, N-terminal region Tthe_1409 PF00009 Elongation factor Tu GTP binding domain Tthe_1409 PF11987 Translation-initiation factor 2 Tthe_1411 PF04296 Protein of unknown function (DUF448) Tthe_1412 PF13184 NusA-like KH domain Tthe_1412 PF08529 NusA N-terminal domain Tthe_1412 PF00575 S1 RNA binding domain Tthe_1413 PF02576 RimP N-terminal domain Tthe_1413 PF17384 RimP C-terminal SH3 domain Tthe_1414 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Tthe_1414 PF02811 PHP domain Tthe_1414 PF14579 Helix-hairpin-helix motif Tthe_1414 PF07733 Bacterial DNA polymerase III alpha NTPase domain Tthe_1414 PF00929 Exonuclease Tthe_1414 PF11490 DNA polymerase III polC-type N-terminus II Tthe_1415 PF00535 Glycosyl transferase family 2 Tthe_1416 PF04551 GcpE protein Tthe_1417 PF17820 PDZ domain Tthe_1417 PF02163 Peptidase family M50 Tthe_1418 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Tthe_1418 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Tthe_1418 PF13288 DXP reductoisomerase C-terminal domain Tthe_1420 PF01255 Putative undecaprenyl diphosphate synthase Tthe_1422 PF01765 Ribosome recycling factor Tthe_1423 PF00696 Amino acid kinase family Tthe_1424 PF00889 Elongation factor TS Tthe_1425 PF00318 Ribosomal protein S2 Tthe_1428 PF04545 Sigma-70, region 4 Tthe_1428 PF04542 Sigma-70 region 2 Tthe_1428 PF04539 Sigma-70 region 3 Tthe_1429 PF03975 CheD chemotactic sensory transduction Tthe_1430 PF04509 CheC-like family Tthe_1431 PF01584 CheW-like domain Tthe_1432 PF07194 P2 response regulator binding domain Tthe_1432 PF01584 CheW-like domain Tthe_1432 PF01627 Hpt domain Tthe_1432 PF02895 Signal transducing histidine kinase, homodimeric domain Tthe_1432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1434 PF10609 NUBPL iron-transfer P-loop NTPase Tthe_1435 PF00448 SRP54-type protein, GTPase domain Tthe_1436 PF00771 FHIPEP family Tthe_1437 PF01312 FlhB HrpN YscU SpaS Family Tthe_1438 PF01311 Bacterial export proteins, family 1 Tthe_1439 PF01313 Bacterial export proteins, family 3 Tthe_1440 PF00813 FliP family Tthe_1442 PF00072 Response regulator receiver domain Tthe_1443 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tthe_1443 PF04509 CheC-like family Tthe_1444 PF02154 Flagellar motor switch protein FliM Tthe_1444 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Tthe_1445 PF03748 Flagellar basal body-associated protein FliL Tthe_1446 PF06289 Flagellar and Swarming motility proteins Tthe_1447 PF07559 Flagellar basal body protein FlaE Tthe_1447 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tthe_1447 PF00460 Flagella basal body rod protein Tthe_1448 PF03963 Flagellar hook capping protein - N-terminal region Tthe_1452 PF18269 T3SS EscN ATPase C-terminal domain Tthe_1452 PF02874 ATP synthase alpha/beta family, beta-barrel domain Tthe_1452 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tthe_1454 PF01706 FliG C-terminal domain Tthe_1454 PF14841 FliG middle domain Tthe_1454 PF14842 FliG N-terminal domain Tthe_1455 PF08345 Flagellar M-ring protein C-terminal Tthe_1455 PF01514 Secretory protein of YscJ/FliF family Tthe_1456 PF02049 Flagellar hook-basal body complex protein FliE Tthe_1457 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tthe_1457 PF00460 Flagella basal body rod protein Tthe_1458 PF00460 Flagella basal body rod protein Tthe_1459 PF06018 CodY GAF-like domain Tthe_1459 PF08222 CodY helix-turn-helix domain Tthe_1460 PF10431 C-terminal, D2-small domain, of ClpB protein Tthe_1460 PF07724 AAA domain (Cdc48 subfamily) Tthe_1460 PF00004 ATPase family associated with various cellular activities (AAA) Tthe_1461 PF00227 Proteasome subunit Tthe_1462 PF01396 Topoisomerase DNA binding C4 zinc finger Tthe_1462 PF01751 Toprim domain Tthe_1462 PF01131 DNA topoisomerase Tthe_1463 PF17782 DprA winged helix domain Tthe_1463 PF02481 DNA recombination-mediator protein A Tthe_1464 PF01351 Ribonuclease HII Tthe_1466 PF00579 tRNA synthetases class I (W and Y) Tthe_1467 PF13335 Magnesium chelatase, subunit ChlI C-terminal Tthe_1467 PF01078 Magnesium chelatase, subunit ChlI Tthe_1468 PF01926 50S ribosome-binding GTPase Tthe_1469 PF01245 Ribosomal protein L19 Tthe_1470 PF01746 tRNA (Guanine-1)-methyltransferase Tthe_1471 PF05239 PRC-barrel domain Tthe_1471 PF01782 RimM N-terminal domain Tthe_1473 PF00886 Ribosomal protein S16 Tthe_1474 PF02978 Signal peptide binding domain Tthe_1474 PF02881 SRP54-type protein, helical bundle domain Tthe_1474 PF00448 SRP54-type protein, GTPase domain Tthe_1475 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Tthe_1480 PF00196 Bacterial regulatory proteins, luxR family Tthe_1480 PF00072 Response regulator receiver domain Tthe_1482 PF00005 ABC transporter Tthe_1485 PF08281 Sigma-70, region 4 Tthe_1485 PF04542 Sigma-70 region 2 Tthe_1486 PF00448 SRP54-type protein, GTPase domain Tthe_1486 PF02881 SRP54-type protein, helical bundle domain Tthe_1487 PF06470 SMC proteins Flexible Hinge Domain Tthe_1487 PF02463 RecF/RecN/SMC N terminal domain Tthe_1488 PF04232 Stage V sporulation protein S (SpoVS) Tthe_1490 PF00035 Double-stranded RNA binding motif Tthe_1490 PF14622 Ribonuclease-III-like Tthe_1491 PF02801 Beta-ketoacyl synthase, C-terminal domain Tthe_1491 PF00109 Beta-ketoacyl synthase, N-terminal domain Tthe_1492 PF00550 Phosphopantetheine attachment site Tthe_1494 PF00698 Acyl transferase domain Tthe_1495 PF03060 Nitronate monooxygenase Tthe_1496 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Tthe_1496 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Tthe_1497 PF02504 Fatty acid synthesis protein Tthe_1499 PF01783 Ribosomal L32p protein family Tthe_1500 PF02620 Large ribosomal RNA subunit accumulation protein YceD Tthe_1501 PF00871 Acetokinase family Tthe_1502 PF01515 Phosphate acetyl/butaryl transferase Tthe_1503 PF05636 HIGH Nucleotidyl Transferase Tthe_1504 PF07670 Nucleoside recognition Tthe_1506 PF01467 Cytidylyltransferase-like Tthe_1508 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tthe_1509 PF00269 Small, acid-soluble spore proteins, alpha/beta type Tthe_1510 PF02645 Uncharacterised protein, DegV family COG1307 Tthe_1511 PF00271 Helicase conserved C-terminal domain Tthe_1511 PF17191 RecG wedge domain Tthe_1511 PF00270 DEAD/DEAH box helicase Tthe_1512 PF13684 Dihydroxyacetone kinase family Tthe_1512 PF02734 DAK2 domain Tthe_1513 PF03780 Asp23 family, cell envelope-related function Tthe_1514 PF00830 Ribosomal L28 family Tthe_1518 PF00834 Ribulose-phosphate 3 epimerase family Tthe_1519 PF16745 RsgA N-terminal domain Tthe_1519 PF03193 RsgA GTPase Tthe_1520 PF03793 PASTA domain Tthe_1520 PF00069 Protein kinase domain Tthe_1522 PF04055 Radical SAM superfamily Tthe_1523 PF01189 16S rRNA methyltransferase RsmB/F Tthe_1523 PF01029 NusB family Tthe_1524 PF04298 Putative neutral zinc metallopeptidase Tthe_1526 PF00551 Formyl transferase Tthe_1526 PF02911 Formyl transferase, C-terminal domain Tthe_1527 PF01327 Polypeptide deformylase Tthe_1528 PF00271 Helicase conserved C-terminal domain Tthe_1528 PF17764 3′ DNA-binding domain (3′BD) Tthe_1528 PF18074 Primosomal protein N C-terminal domain Tthe_1528 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Tthe_1528 PF04851 Type III restriction enzyme, res subunit Tthe_1529 PF02441 Flavoprotein Tthe_1529 PF04127 DNA / pantothenate metabolism flavoprotein Tthe_1530 PF01192 RNA polymerase Rpb6 Tthe_1531 PF00625 Guanylate kinase Tthe_1532 PF04025 Domain of unknown function (DUF370) Tthe_1533 PF08340 Domain of unknown function (DUF1732) Tthe_1533 PF03755 YicC-like family, N-terminal region Tthe_1534 PF01678 Diaminopimelate epimerase Tthe_1538 PF17785 PUA-like domain Tthe_1538 PF10672 S-adenosylmethionine-dependent methyltransferase Tthe_1539 PF00156 Phosphoribosyl transferase domain Tthe_1540 PF01180 Dihydroorotate dehydrogenase Tthe_1541 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tthe_1542 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Tthe_1543 PF01979 Amidohydrolase family Tthe_1544 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tthe_1544 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tthe_1545 PF00156 Phosphoribosyl transferase domain Tthe_1547 PF00586 AIR synthase related protein, N-terminal domain Tthe_1547 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Tthe_1547 PF02769 AIR synthase related protein, C-terminal domain Tthe_1548 PF00753 Metallo-beta-lactamase superfamily Tthe_1549 PF02580 D-Tyr-tRNA(Tyr) deacylase Tthe_1550 PF13291 ACT domain Tthe_1550 PF04607 Region found in RelA / SpoT proteins Tthe_1550 PF02824 TGS domain Tthe_1551 PF00156 Phosphoribosyl transferase domain Tthe_1552 PF02272 DHHA1 domain Tthe_1552 PF01368 DHH family Tthe_1552 PF17768 RecJ OB domain Tthe_1552 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Tthe_1553 PF03109 ABC1 family Tthe_1555 PF02355 Protein export membrane protein Tthe_1556 PF02355 Protein export membrane protein Tthe_1556 PF07549 SecD/SecF GG Motif Tthe_1562 PF01702 Queuine tRNA-ribosyltransferase Tthe_1563 PF02547 Queuosine biosynthesis protein Tthe_1564 PF08486 Stage II sporulation protein Tthe_1565 PF11146 Protein of unknown function (DUF2905) Tthe_1566 PF17864 RuvB AAA lid domain Tthe_1566 PF05491 RuvB C-terminal winged helix domain Tthe_1566 PF05496 Holliday junction DNA helicase RuvB P-loop domain Tthe_1567 PF07499 RuvA, C-terminal domain Tthe_1567 PF01330 RuvA N terminal domain Tthe_1568 PF02075 Crossover junction endodeoxyribonuclease RuvC Tthe_1570 PF01584 CheW-like domain Tthe_1571 PF01709 Transcriptional regulator Tthe_1572 PF01925 Sulfite exporter TauE/SafE Tthe_1576 PF01205 Uncharacterized protein family UPF0029 Tthe_1576 PF09186 Domain of unknown function (DUF1949) Tthe_1577 PF00293 NUDIX domain Tthe_1579 PF16360 GTP-binding GTPase Middle Region Tthe_1579 PF01926 50S ribosome-binding GTPase Tthe_1579 PF13167 GTP-binding GTPase N-terminal Tthe_1584 PF01507 Phosphoadenosine phosphosulfate reductase family Tthe_1585 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1586 PF00005 ABC transporter Tthe_1587 PF00009 Elongation factor Tu GTP binding domain Tthe_1588 PF01507 Phosphoadenosine phosphosulfate reductase family Tthe_1589 PF01053 Cys/Met metabolism PLP-dependent enzyme Tthe_1590 PF01206 Sulfurtransferase TusA Tthe_1592 PF00899 ThiF family Tthe_1593 PF05690 Thiazole biosynthesis protein ThiG Tthe_1593 PF02597 ThiS family Tthe_1595 PF00490 Delta-aminolevulinic acid dehydratase Tthe_1596 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_1596 PF10414 Sirohaem synthase dimerisation region Tthe_1596 PF14824 Sirohaem biosynthesis protein central Tthe_1597 PF00202 Aminotransferase class-III Tthe_1599 PF03900 Porphobilinogen deaminase, C-terminal domain Tthe_1599 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Tthe_1600 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Tthe_1600 PF01488 Shikimate / quinate 5-dehydrogenase Tthe_1600 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Tthe_1601 PF00005 ABC transporter Tthe_1602 PF00005 ABC transporter Tthe_1602 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tthe_1604 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tthe_1607 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Tthe_1607 PF01871 AMMECR1 Tthe_1608 PF13411 MerR HTH family regulatory protein Tthe_1609 PF07690 Major Facilitator Superfamily Tthe_1610 PF00586 AIR synthase related protein, N-terminal domain Tthe_1610 PF02769 AIR synthase related protein, C-terminal domain Tthe_1610 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Tthe_1611 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Tthe_1611 PF01276 Orn/Lys/Arg decarboxylase, major domain Tthe_1613 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1613 PF00672 HAMP domain Tthe_1614 PF00072 Response regulator receiver domain Tthe_1614 PF00486 Transcriptional regulatory protein, C terminal Tthe_1615 PF00085 Thioredoxin Tthe_1616 PF00578 AhpC/TSA family Tthe_1617 PF02683 Cytochrome C biogenesis protein transmembrane region Tthe_1618 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Tthe_1619 PF00480 ROK family Tthe_1624 PF01169 Uncharacterized protein family UPF0016 Tthe_1625 PF07486 Cell Wall Hydrolase Tthe_1625 PF01471 Putative peptidoglycan binding domain Tthe_1627 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1627 PF18719 ArlS sensor domain Tthe_1627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1628 PF00486 Transcriptional regulatory protein, C terminal Tthe_1628 PF00072 Response regulator receiver domain Tthe_1629 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tthe_1630 PF02153 Prephenate dehydrogenase Tthe_1631 PF00793 DAHP synthetase I family Tthe_1631 PF18152 DAHP synthase ferredoxin-like domain Tthe_1632 PF01842 ACT domain Tthe_1632 PF01817 Chorismate mutase type II Tthe_1632 PF00800 Prephenate dehydratase Tthe_1633 PF00501 AMP-binding enzyme Tthe_1633 PF13193 AMP-binding enzyme C-terminal domain Tthe_1634 PF01761 3-dehydroquinate synthase Tthe_1635 PF03313 Serine dehydratase alpha chain Tthe_1636 PF03315 Serine dehydratase beta chain Tthe_1637 PF08439 Oligopeptidase F Tthe_1637 PF01432 Peptidase family M3 Tthe_1639 PF04199 Putative cyclase Tthe_1640 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Tthe_1640 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Tthe_1642 PF00753 Metallo-beta-lactamase superfamily Tthe_1642 PF00258 Flavodoxin Tthe_1644 PF14098 Small, acid-soluble spore protein I Tthe_1646 PF02673 Bacitracin resistance protein BacA Tthe_1647 PF01661 Macro domain Tthe_1649 PF03009 Glycerophosphoryl diester phosphodiesterase family Tthe_1650 PF02310 B12 binding domain Tthe_1650 PF04055 Radical SAM superfamily Tthe_1652 PF06207 Protein of unknown function (DUF1002) Tthe_1653 PF00704 Glycosyl hydrolases family 18 Tthe_1654 PF06971 Putative DNA-binding protein N-terminus Tthe_1654 PF02629 CoA binding domain Tthe_1655 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Tthe_1655 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Tthe_1656 PF02803 Thiolase, C-terminal domain Tthe_1656 PF00108 Thiolase, N-terminal domain Tthe_1657 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Tthe_1657 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Tthe_1658 PF01012 Electron transfer flavoprotein domain Tthe_1658 PF00766 Electron transfer flavoprotein FAD-binding domain Tthe_1659 PF01012 Electron transfer flavoprotein domain Tthe_1660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Tthe_1660 PF02770 Acyl-CoA dehydrogenase, middle domain Tthe_1660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Tthe_1661 PF00378 Enoyl-CoA hydratase/isomerase Tthe_1662 PF09861 Lactate racemase N-terminal domain Tthe_1663 PF01565 FAD binding domain Tthe_1663 PF02913 FAD linked oxidases, C-terminal domain Tthe_1664 PF01012 Electron transfer flavoprotein domain Tthe_1664 PF00766 Electron transfer flavoprotein FAD-binding domain Tthe_1665 PF01012 Electron transfer flavoprotein domain Tthe_1666 PF02652 L-lactate permease Tthe_1667 PF07729 FCD domain Tthe_1667 PF00392 Bacterial regulatory proteins, gntR family Tthe_1668 PF00717 Peptidase S24-like Tthe_1668 PF01726 LexA DNA binding domain Tthe_1677 PF03841 L-seryl-tRNA selenium transferase Tthe_1683 PF01979 Amidohydrolase family Tthe_1684 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tthe_1684 PF05043 Mga helix-turn-helix domain Tthe_1684 PF00874 PRD domain Tthe_1684 PF08279 HTH domain Tthe_1684 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_1685 PF01548 Transposase Tthe_1685 PF02371 Transposase IS116/IS110/IS902 family Tthe_1687 PF01527 Transposase Tthe_1688 PF01676 Metalloenzyme superfamily Tthe_1689 PF01168 Alanine racemase, N-terminal domain Tthe_1690 PF00155 Aminotransferase class I and II Tthe_1691 PF02126 Phosphotriesterase family Tthe_1693 PF10797 Protein of unknown function Tthe_1694 PF10941 Protein of unknown function DUF2620 Tthe_1696 PF14503 YhfZ C-terminal domain Tthe_1696 PF14502 Helix-turn-helix domain Tthe_1698 PF04227 Indigoidine synthase A like protein Tthe_1699 PF00294 pfkB family carbohydrate kinase Tthe_1700 PF00005 ABC transporter Tthe_1701 PF00005 ABC transporter Tthe_1705 PF01048 Phosphorylase superfamily Tthe_1707 PF01695 IstB-like ATP binding protein Tthe_1716 PF01134 Glucose inhibited division protein A Tthe_1716 PF13932 GidA associated domain Tthe_1718 PF05378 Hydantoinase/oxoprolinase N-terminal region Tthe_1718 PF01968 Hydantoinase/oxoprolinase Tthe_1722 PF13407 Periplasmic binding protein domain Tthe_1723 PF02653 Branched-chain amino acid transport system / permease component Tthe_1724 PF00005 ABC transporter Tthe_1725 PF05025 RbsD / FucU transport protein family Tthe_1726 PF00294 pfkB family carbohydrate kinase Tthe_1728 PF01116 Fructose-bisphosphate aldolase class-II Tthe_1730 PF01380 SIS domain Tthe_1731 PF00834 Ribulose-phosphate 3 epimerase family Tthe_1732 PF00107 Zinc-binding dehydrogenase Tthe_1732 PF08240 Alcohol dehydrogenase GroES-like domain Tthe_1733 PF03613 PTS system mannose/fructose/sorbose family IID component Tthe_1735 PF03610 PTS system fructose IIA component Tthe_1735 PF03830 PTS system sorbose subfamily IIB component Tthe_1736 PF03830 PTS system sorbose subfamily IIB component Tthe_1736 PF03610 PTS system fructose IIA component Tthe_1737 PF00158 Sigma-54 interaction domain Tthe_1737 PF00874 PRD domain Tthe_1737 PF03610 PTS system fructose IIA component Tthe_1738 PF13936 Helix-turn-helix domain Tthe_1740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Tthe_1740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tthe_1741 PF02660 Glycerol-3-phosphate acyltransferase Tthe_1742 PF01926 50S ribosome-binding GTPase Tthe_1742 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Tthe_1748 PF01895 PhoU domain Tthe_1749 PF00005 ABC transporter Tthe_1750 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1751 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1752 PF12849 PBP superfamily domain Tthe_1753 PF00989 PAS fold Tthe_1753 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1753 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1753 PF16736 Single Cache-like Tthe_1754 PF00486 Transcriptional regulatory protein, C terminal Tthe_1754 PF00072 Response regulator receiver domain Tthe_1755 PF03477 ATP cone domain Tthe_1756 PF05239 PRC-barrel domain Tthe_1757 PF04545 Sigma-70, region 4 Tthe_1757 PF04542 Sigma-70 region 2 Tthe_1757 PF04539 Sigma-70 region 3 Tthe_1758 PF04545 Sigma-70, region 4 Tthe_1758 PF04542 Sigma-70 region 2 Tthe_1759 PF03419 Sporulation factor SpoIIGA Tthe_1760 PF00091 Tubulin/FtsZ family, GTPase domain Tthe_1760 PF12327 FtsZ family, C-terminal domain Tthe_1761 PF02491 SHS2 domain inserted in FTSA Tthe_1762 PF06947 Protein of unknown function (DUF1290) Tthe_1763 PF05949 Bacterial protein of unknown function (DUF881) Tthe_1764 PF03799 Cell division protein FtsQ Tthe_1764 PF08478 POTRA domain, FtsQ-type Tthe_1765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tthe_1766 PF04101 Glycosyltransferase family 28 C-terminal domain Tthe_1766 PF03033 Glycosyltransferase family 28 N-terminal domain Tthe_1767 PF01098 Cell cycle protein Tthe_1768 PF08245 Mur ligase middle domain Tthe_1768 PF02875 Mur ligase family, glutamate ligase domain Tthe_1769 PF00953 Glycosyl transferase family 4 Tthe_1769 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Tthe_1770 PF08245 Mur ligase middle domain Tthe_1770 PF02875 Mur ligase family, glutamate ligase domain Tthe_1770 PF01225 Mur ligase family, catalytic domain Tthe_1771 PF08245 Mur ligase middle domain Tthe_1771 PF02875 Mur ligase family, glutamate ligase domain Tthe_1771 PF01225 Mur ligase family, catalytic domain Tthe_1772 PF00905 Penicillin binding protein transpeptidase domain Tthe_1772 PF03793 PASTA domain Tthe_1772 PF03717 Penicillin-binding Protein dimerisation domain Tthe_1774 PF01795 MraW methylase family Tthe_1775 PF02381 MraZ protein, putative antitoxin-like Tthe_1776 PF05193 Peptidase M16 inactive domain Tthe_1776 PF00675 Insulinase (Peptidase family M16) Tthe_1777 PF05193 Peptidase M16 inactive domain Tthe_1778 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Tthe_1779 PF06071 Protein of unknown function (DUF933) Tthe_1779 PF01926 50S ribosome-binding GTPase Tthe_1780 PF02568 Thiamine biosynthesis protein (ThiI) Tthe_1780 PF02926 THUMP domain Tthe_1781 PF00266 Aminotransferase class-V Tthe_1787 PF02583 Metal-sensitive transcriptional repressor Tthe_1788 PF13439 Glycosyltransferase Family 4 Tthe_1792 PF00188 Cysteine-rich secretory protein family Tthe_1793 PF02127 Aminopeptidase I zinc metalloprotease (M18) Tthe_1794 PF00196 Bacterial regulatory proteins, luxR family Tthe_1794 PF00072 Response regulator receiver domain Tthe_1797 PF01713 Smr domain Tthe_1797 PF00488 MutS domain V Tthe_1798 PF01136 Peptidase family U32 Tthe_1798 PF12392 Collagenase Tthe_1800 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Tthe_1800 PF01588 Putative tRNA binding domain Tthe_1800 PF03147 Ferredoxin-fold anticodon binding domain Tthe_1800 PF03484 tRNA synthetase B5 domain Tthe_1800 PF03483 B3/4 domain Tthe_1801 PF01409 tRNA synthetases class II core domain (F) Tthe_1801 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Tthe_1802 PF00588 SpoU rRNA Methylase family Tthe_1802 PF08032 RNA 2'-O ribose methyltransferase substrate binding Tthe_1803 PF00453 Ribosomal protein L20 Tthe_1804 PF01632 Ribosomal protein L35 Tthe_1805 PF00707 Translation initiation factor IF-3, C-terminal domain Tthe_1805 PF05198 Translation initiation factor IF-3, N-terminal domain Tthe_1806 PF01264 Chorismate synthase Tthe_1808 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tthe_1808 PF02824 TGS domain Tthe_1808 PF03129 Anticodon binding domain Tthe_1808 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tthe_1809 PF04286 Protein of unknown function (DUF445) Tthe_1812 PF00072 Response regulator receiver domain Tthe_1812 PF00486 Transcriptional regulatory protein, C terminal Tthe_1813 PF00232 Glycosyl hydrolase family 1 Tthe_1815 PF00733 Asparagine synthase Tthe_1815 PF13537 Glutamine amidotransferase domain Tthe_1816 PF00543 Nitrogen regulatory protein P-II Tthe_1817 PF00909 Ammonium Transporter Family Tthe_1819 PF00909 Ammonium Transporter Family Tthe_1821 PF00465 Iron-containing alcohol dehydrogenase Tthe_1823 PF03649 Uncharacterised protein family (UPF0014) Tthe_1824 PF00005 ABC transporter Tthe_1828 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Tthe_1828 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Tthe_1829 PF03613 PTS system mannose/fructose/sorbose family IID component Tthe_1830 PF03609 PTS system sorbose-specific iic component Tthe_1831 PF03830 PTS system sorbose subfamily IIB component Tthe_1831 PF03610 PTS system fructose IIA component Tthe_1832 PF03830 PTS system sorbose subfamily IIB component Tthe_1832 PF03610 PTS system fructose IIA component Tthe_1833 PF03610 PTS system fructose IIA component Tthe_1833 PF00158 Sigma-54 interaction domain Tthe_1833 PF00874 PRD domain Tthe_1834 PF00005 ABC transporter Tthe_1836 PF02553 Cobalt transport protein component CbiN Tthe_1837 PF01891 Cobalt uptake substrate-specific transmembrane region Tthe_1838 PF02571 Precorrin-6x reductase CbiJ/CobK Tthe_1839 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_1839 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Tthe_1840 PF11760 Cobalamin synthesis G N-terminal Tthe_1840 PF01890 Cobalamin synthesis G C-terminus Tthe_1840 PF11761 Cobalamin biosynthesis central region Tthe_1841 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_1842 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_1843 PF05175 Methyltransferase small domain Tthe_1844 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Tthe_1845 PF01888 CbiD Tthe_1846 PF02570 Precorrin-8X methylmutase Tthe_1851 PF07690 Major Facilitator Superfamily Tthe_1859 PF00148 Nitrogenase component 1 type Oxidoreductase Tthe_1860 PF00148 Nitrogenase component 1 type Oxidoreductase Tthe_1861 PF00543 Nitrogen regulatory protein P-II Tthe_1862 PF00543 Nitrogen regulatory protein P-II Tthe_1864 PF00148 Nitrogenase component 1 type Oxidoreductase Tthe_1865 PF00148 Nitrogenase component 1 type Oxidoreductase Tthe_1866 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Tthe_1867 PF02579 Dinitrogenase iron-molybdenum cofactor Tthe_1867 PF04055 Radical SAM superfamily Tthe_1868 PF02579 Dinitrogenase iron-molybdenum cofactor Tthe_1868 PF04055 Radical SAM superfamily Tthe_1870 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1873 PF02581 Thiamine monophosphate synthase Tthe_1874 PF02110 Hydroxyethylthiazole kinase family Tthe_1876 PF02581 Thiamine monophosphate synthase Tthe_1876 PF08543 Phosphomethylpyrimidine kinase Tthe_1879 PF00664 ABC transporter transmembrane region Tthe_1879 PF00005 ABC transporter Tthe_1880 PF03069 Acetamidase/Formamidase family Tthe_1881 PF00892 EamA-like transporter family Tthe_1882 PF00672 HAMP domain Tthe_1882 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1882 PF13426 PAS domain Tthe_1883 PF00072 Response regulator receiver domain Tthe_1883 PF00486 Transcriptional regulatory protein, C terminal Tthe_1886 PF00005 ABC transporter Tthe_1888 PF02554 Carbon starvation protein CstA Tthe_1888 PF13722 5TM C-terminal transporter carbon starvation CstA Tthe_1889 PF04397 LytTr DNA-binding domain Tthe_1889 PF00072 Response regulator receiver domain Tthe_1890 PF06580 Histidine kinase Tthe_1890 PF07694 5TMR of 5TMR-LYT Tthe_1890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1892 PF01555 DNA methylase Tthe_1894 PF02086 D12 class N6 adenine-specific DNA methyltransferase Tthe_1896 PF13302 Acetyltransferase (GNAT) domain Tthe_1897 PF03845 Spore germination protein Tthe_1902 PF00834 Ribulose-phosphate 3 epimerase family Tthe_1903 PF00923 Transaldolase/Fructose-6-phosphate aldolase Tthe_1904 PF02502 Ribose/Galactose Isomerase Tthe_1905 PF00834 Ribulose-phosphate 3 epimerase family Tthe_1906 PF00923 Transaldolase/Fructose-6-phosphate aldolase Tthe_1907 PF02780 Transketolase, C-terminal domain Tthe_1907 PF02779 Transketolase, pyrimidine binding domain Tthe_1908 PF00456 Transketolase, thiamine diphosphate binding domain Tthe_1909 PF00107 Zinc-binding dehydrogenase Tthe_1909 PF08240 Alcohol dehydrogenase GroES-like domain Tthe_1910 PF08240 Alcohol dehydrogenase GroES-like domain Tthe_1910 PF00107 Zinc-binding dehydrogenase Tthe_1911 PF03611 PTS system sugar-specific permease component Tthe_1912 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_1917 PF00892 EamA-like transporter family Tthe_1918 PF00356 Bacterial regulatory proteins, lacI family Tthe_1921 PF00128 Alpha amylase, catalytic domain Tthe_1922 PF00294 pfkB family carbohydrate kinase Tthe_1924 PF00251 Glycosyl hydrolases family 32 N-terminal domain Tthe_1924 PF08244 Glycosyl hydrolases family 32 C terminal Tthe_1926 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1928 PF04041 beta-1,4-mannooligosaccharide phosphorylase Tthe_1929 PF04041 beta-1,4-mannooligosaccharide phosphorylase Tthe_1931 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1932 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_1934 PF00356 Bacterial regulatory proteins, lacI family Tthe_1936 PF04041 beta-1,4-mannooligosaccharide phosphorylase Tthe_1938 PF00356 Bacterial regulatory proteins, lacI family Tthe_1944 PF03030 Inorganic H+ pyrophosphatase Tthe_1945 PF02080 TrkA-C domain Tthe_1945 PF02254 TrkA-N domain Tthe_1946 PF02080 TrkA-C domain Tthe_1946 PF02254 TrkA-N domain Tthe_1947 PF00690 Cation transporter/ATPase, N-terminus Tthe_1947 PF00689 Cation transporting ATPase, C-terminus Tthe_1950 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tthe_1950 PF01571 Aminomethyltransferase folate-binding domain Tthe_1951 PF01597 Glycine cleavage H-protein Tthe_1952 PF02347 Glycine cleavage system P-protein Tthe_1953 PF02347 Glycine cleavage system P-protein Tthe_1955 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_1955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Tthe_1956 PF03099 Biotin/lipoate A/B protein ligase family Tthe_1956 PF10437 Bacterial lipoate protein ligase C-terminus Tthe_1957 PF13180 PDZ domain Tthe_1959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1959 PF16736 Single Cache-like Tthe_1959 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1959 PF00989 PAS fold Tthe_1960 PF00072 Response regulator receiver domain Tthe_1960 PF00486 Transcriptional regulatory protein, C terminal Tthe_1965 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tthe_1965 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Tthe_1972 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Tthe_1972 PF01522 Polysaccharide deacetylase Tthe_1973 PF00072 Response regulator receiver domain Tthe_1973 PF00486 Transcriptional regulatory protein, C terminal Tthe_1974 PF00672 HAMP domain Tthe_1974 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1974 PF13426 PAS domain Tthe_1974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1975 PF03814 Potassium-transporting ATPase A subunit Tthe_1977 PF02669 K+-transporting ATPase, c chain Tthe_1978 PF13493 Domain of unknown function (DUF4118) Tthe_1978 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1978 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1978 PF13492 GAF domain Tthe_1978 PF02702 Osmosensitive K+ channel His kinase sensor domain Tthe_1980 PF00512 His Kinase A (phospho-acceptor) domain Tthe_1980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_1980 PF00672 HAMP domain Tthe_1981 PF00072 Response regulator receiver domain Tthe_1981 PF00486 Transcriptional regulatory protein, C terminal Tthe_1983 PF13537 Glutamine amidotransferase domain Tthe_1983 PF00733 Asparagine synthase Tthe_1984 PF02585 GlcNAc-PI de-N-acetylase Tthe_1985 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tthe_1985 PF01571 Aminomethyltransferase folate-binding domain Tthe_1985 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_1985 PF17806 Sarcosine oxidase A3 domain Tthe_1986 PF03023 Lipid II flippase MurJ Tthe_1988 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tthe_1988 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tthe_1991 PF03649 Uncharacterised protein family (UPF0014) Tthe_1992 PF00005 ABC transporter Tthe_1993 PF00313 'Cold-shock' DNA-binding domain Tthe_1994 PF02146 Sir2 family Tthe_1997 PF01106 NifU-like domain Tthe_1998 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tthe_2000 PF04011 LemA family Tthe_2001 PF13185 GAF domain Tthe_2002 PF01790 Prolipoprotein diacylglyceryl transferase Tthe_2004 PF03772 Competence protein Tthe_2004 PF00753 Metallo-beta-lactamase superfamily Tthe_2006 PF13472 GDSL-like Lipase/Acylhydrolase family Tthe_2007 PF01238 Phosphomannose isomerase type I Tthe_2008 PF01048 Phosphorylase superfamily Tthe_2010 PF01784 NIF3 (NGG1p interacting factor 3) Tthe_2011 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Tthe_2012 PF04542 Sigma-70 region 2 Tthe_2012 PF04545 Sigma-70, region 4 Tthe_2012 PF03979 Sigma-70 factor, region 1.1 Tthe_2012 PF00140 Sigma-70 factor, region 1.2 Tthe_2012 PF04539 Sigma-70 region 3 Tthe_2013 PF08275 DNA primase catalytic core, N-terminal domain Tthe_2013 PF10410 DnaB-helicase binding domain of primase Tthe_2013 PF01807 CHC2 zinc finger Tthe_2014 PF01966 HD domain Tthe_2014 PF13286 Phosphohydrolase-associated domain Tthe_2015 PF03840 Preprotein translocase SecG subunit Tthe_2016 PF02001 Protein of unknown function DUF134 Tthe_2017 PF03952 Enolase, N-terminal domain Tthe_2017 PF00113 Enolase, C-terminal TIM barrel domain Tthe_2019 PF00121 Triosephosphate isomerase Tthe_2020 PF00162 Phosphoglycerate kinase Tthe_2021 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Tthe_2021 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tthe_2022 PF04198 Putative sugar-binding domain Tthe_2023 PF04552 Sigma-54, DNA binding domain Tthe_2023 PF04963 Sigma-54 factor, core binding domain Tthe_2023 PF00309 Sigma-54 factor, Activator interacting domain (AID) Tthe_2024 PF00708 Acylphosphatase Tthe_2026 PF01475 Ferric uptake regulator family Tthe_2027 PF04294 VanW like protein Tthe_2028 PF00730 HhH-GPD superfamily base excision DNA repair protein Tthe_2028 PF00633 Helix-hairpin-helix motif Tthe_2028 PF10576 Iron-sulfur binding domain of endonuclease III Tthe_2029 PF08331 Domain of unknown function (DUF1730) Tthe_2030 PF05362 Lon protease (S16) C-terminal proteolytic domain Tthe_2030 PF13654 AAA domain Tthe_2036 PF13186 Iron-sulfur cluster-binding domain Tthe_2036 PF04055 Radical SAM superfamily Tthe_2037 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Tthe_2037 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Tthe_2037 PF02824 TGS domain Tthe_2037 PF03129 Anticodon binding domain Tthe_2038 PF02915 Rubrerythrin Tthe_2047 PF00849 RNA pseudouridylate synthase Tthe_2050 PF02073 Thermophilic metalloprotease (M29) Tthe_2051 PF13361 UvrD-like helicase C-terminal domain Tthe_2051 PF00580 UvrD/REP helicase N-terminal domain Tthe_2051 PF12705 PD-(D/E)XK nuclease superfamily Tthe_2052 PF12705 PD-(D/E)XK nuclease superfamily Tthe_2053 PF00682 HMGL-like Tthe_2053 PF08502 LeuA allosteric (dimerisation) domain Tthe_2054 PF01070 FMN-dependent dehydrogenase Tthe_2055 PF00881 Nitroreductase family Tthe_2057 PF14489 QueF-like protein Tthe_2059 PF13807 G-rich domain on putative tyrosine kinase Tthe_2059 PF02706 Chain length determinant protein Tthe_2059 PF13614 AAA domain Tthe_2060 PF00483 Nucleotidyl transferase Tthe_2063 PF00535 Glycosyl transferase family 2 Tthe_2063 PF13181 Tetratricopeptide repeat Tthe_2065 PF04073 Aminoacyl-tRNA editing domain Tthe_2066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tthe_2066 PF00672 HAMP domain Tthe_2066 PF17200 Single Cache domain 2 Tthe_2067 PF00665 Integrase core domain Tthe_2068 PF01695 IstB-like ATP binding protein Tthe_2073 PF01734 Patatin-like phospholipase Tthe_2074 PF01553 Acyltransferase Tthe_2075 PF00440 Bacterial regulatory proteins, tetR family Tthe_2075 PF13977 BetI-type transcriptional repressor, C-terminal Tthe_2076 PF12850 Calcineurin-like phosphoesterase superfamily domain Tthe_2077 PF01725 Ham1 family Tthe_2078 PF03725 3' exoribonuclease family, domain 2 Tthe_2078 PF01138 3' exoribonuclease family, domain 1 Tthe_2079 PF05036 Sporulation related domain Tthe_2079 PF01520 N-acetylmuramoyl-L-alanine amidase Tthe_2081 PF00005 ABC transporter Tthe_2081 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tthe_2082 PF00005 ABC transporter Tthe_2082 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Tthe_2083 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2083 PF12911 N-terminal TM domain of oligopeptide transport permease C Tthe_2084 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tthe_2086 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tthe_2087 PF02934 GatB/GatE catalytic domain Tthe_2087 PF02637 GatB domain Tthe_2088 PF01425 Amidase Tthe_2089 PF02686 Glu-tRNAGln amidotransferase C subunit Tthe_2090 PF01653 NAD-dependent DNA ligase adenylation domain Tthe_2090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Tthe_2090 PF03120 NAD-dependent DNA ligase OB-fold domain Tthe_2090 PF12826 Helix-hairpin-helix motif Tthe_2090 PF00533 BRCA1 C Terminus (BRCT) domain Tthe_2091 PF13361 UvrD-like helicase C-terminal domain Tthe_2091 PF00580 UvrD/REP helicase N-terminal domain Tthe_2092 PF01371 Trp repressor protein Tthe_2093 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tthe_2094 PF02378 Phosphotransferase system, EIIC Tthe_2097 PF05043 Mga helix-turn-helix domain Tthe_2097 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tthe_2097 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_2097 PF08279 HTH domain Tthe_2097 PF00874 PRD domain Tthe_2098 PF00005 ABC transporter Tthe_2098 PF09383 NIL domain Tthe_2099 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2100 PF03180 NLPA lipoprotein Tthe_2101 PF01943 Polysaccharide biosynthesis protein Tthe_2101 PF14667 Polysaccharide biosynthesis C-terminal domain Tthe_2105 PF01546 Peptidase family M20/M25/M40 Tthe_2105 PF07687 Peptidase dimerisation domain Tthe_2106 PF01177 Asp/Glu/Hydantoin racemase Tthe_2107 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Tthe_2107 PF02844 Phosphoribosylglycinamide synthetase, N domain Tthe_2107 PF02843 Phosphoribosylglycinamide synthetase, C domain Tthe_2108 PF01808 AICARFT/IMPCHase bienzyme Tthe_2108 PF02142 MGS-like domain Tthe_2109 PF00551 Formyl transferase Tthe_2110 PF02769 AIR synthase related protein, C-terminal domain Tthe_2110 PF00586 AIR synthase related protein, N-terminal domain Tthe_2111 PF00156 Phosphoribosyl transferase domain Tthe_2112 PF01259 SAICAR synthetase Tthe_2113 PF00731 AIR carboxylase Tthe_2115 PF00117 Glutamine amidotransferase class-I Tthe_2115 PF00958 GMP synthase C terminal domain Tthe_2115 PF02540 NAD synthase Tthe_2116 PF00571 CBS domain Tthe_2116 PF00478 IMP dehydrogenase / GMP reductase domain Tthe_2117 PF00118 TCP-1/cpn60 chaperonin family Tthe_2118 PF00166 Chaperonin 10 Kd subunit Tthe_2123 PF00082 Subtilase family Tthe_2125 PF08402 TOBE domain Tthe_2125 PF00005 ABC transporter Tthe_2126 PF02653 Branched-chain amino acid transport system / permease component Tthe_2129 PF02653 Branched-chain amino acid transport system / permease component Tthe_2130 PF11862 Domain of unknown function (DUF3382) Tthe_2130 PF02653 Branched-chain amino acid transport system / permease component Tthe_2131 PF12399 Branched-chain amino acid ATP-binding cassette transporter Tthe_2131 PF00005 ABC transporter Tthe_2132 PF00005 ABC transporter Tthe_2134 PF00005 ABC transporter Tthe_2134 PF00664 ABC transporter transmembrane region Tthe_2136 PF01695 IstB-like ATP binding protein Tthe_2137 PF00665 Integrase core domain Tthe_2144 PF04474 Protein of unknown function (DUF554) Tthe_2148 PF00072 Response regulator receiver domain Tthe_2148 PF04397 LytTr DNA-binding domain Tthe_2149 PF01566 Natural resistance-associated macrophage protein Tthe_2150 PF02629 CoA binding domain Tthe_2150 PF06971 Putative DNA-binding protein N-terminus Tthe_2151 PF13677 Membrane MotB of proton-channel complex MotA/MotB Tthe_2151 PF00691 OmpA family Tthe_2152 PF01618 MotA/TolQ/ExbB proton channel family Tthe_2153 PF16326 ABC transporter C-terminal domain Tthe_2153 PF00005 ABC transporter Tthe_2153 PF12848 ABC transporter Tthe_2154 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tthe_2155 PF00814 Glycoprotease family Tthe_2156 PF00583 Acetyltransferase (GNAT) family Tthe_2157 PF00814 Glycoprotease family Tthe_2158 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Tthe_2159 PF12822 ECF transporter, substrate-specific component Tthe_2160 PF00696 Amino acid kinase family Tthe_2161 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Tthe_2161 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Tthe_2162 PF01979 Amidohydrolase family Tthe_2163 PF09335 SNARE associated Golgi protein Tthe_2164 PF00149 Calcineurin-like phosphoesterase Tthe_2165 PF17674 HHH domain Tthe_2165 PF00575 S1 RNA binding domain Tthe_2165 PF09371 Tex-like protein N-terminal domain Tthe_2165 PF16921 Tex protein YqgF-like domain Tthe_2167 PF07517 SecA DEAD-like domain Tthe_2167 PF02810 SEC-C motif Tthe_2167 PF07516 SecA Wing and Scaffold domain Tthe_2167 PF01043 SecA preprotein cross-linking domain Tthe_2169 PF08279 HTH domain Tthe_2169 PF02829 3H domain Tthe_2171 PF00072 Response regulator receiver domain Tthe_2173 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Tthe_2173 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Tthe_2174 PF00005 ABC transporter Tthe_2175 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2176 PF00497 Bacterial extracellular solute-binding proteins, family 3 Tthe_2179 PF02561 Flagellar protein FliS Tthe_2180 PF02465 Flagellar hook-associated protein 2 N-terminus Tthe_2180 PF07195 Flagellar hook-associated protein 2 C-terminus Tthe_2180 PF07196 Flagellin hook IN motif Tthe_2183 PF01330 RuvA N terminal domain Tthe_2183 PF07499 RuvA, C-terminal domain Tthe_2187 PF00535 Glycosyl transferase family 2 Tthe_2187 PF13181 Tetratricopeptide repeat Tthe_2188 PF01209 ubiE/COQ5 methyltransferase family Tthe_2190 PF00669 Bacterial flagellin N-terminal helical region Tthe_2190 PF00700 Bacterial flagellin C-terminal helical region Tthe_2191 PF02599 Global regulator protein family Tthe_2192 PF02623 FliW protein Tthe_2194 PF00700 Bacterial flagellin C-terminal helical region Tthe_2194 PF00669 Bacterial flagellin N-terminal helical region Tthe_2195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tthe_2195 PF00460 Flagella basal body rod protein Tthe_2199 PF00156 Phosphoribosyl transferase domain Tthe_2200 PF13538 UvrD-like helicase C-terminal domain Tthe_2200 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Tthe_2200 PF14490 Helix-hairpin-helix containing domain Tthe_2202 PF01966 HD domain Tthe_2203 PF02773 S-adenosylmethionine synthetase, C-terminal domain Tthe_2203 PF00438 S-adenosylmethionine synthetase, N-terminal domain Tthe_2203 PF02772 S-adenosylmethionine synthetase, central domain Tthe_2204 PF02915 Rubrerythrin Tthe_2205 PF00578 AhpC/TSA family Tthe_2207 PF00121 Triosephosphate isomerase Tthe_2209 PF06866 Protein of unknown function (DUF1256) Tthe_2211 PF00512 His Kinase A (phospho-acceptor) domain Tthe_2211 PF16736 Single Cache-like Tthe_2211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2211 PF00989 PAS fold Tthe_2212 PF00486 Transcriptional regulatory protein, C terminal Tthe_2212 PF00072 Response regulator receiver domain Tthe_2213 PF01979 Amidohydrolase family Tthe_2214 PF00356 Bacterial regulatory proteins, lacI family Tthe_2217 PF04239 Protein of unknown function (DUF421) Tthe_2222 PF02548 Ketopantoate hydroxymethyltransferase Tthe_2223 PF02569 Pantoate-beta-alanine ligase Tthe_2224 PF02261 Aspartate decarboxylase Tthe_2226 PF01479 S4 domain Tthe_2226 PF00579 tRNA synthetases class I (W and Y) Tthe_2228 PF00330 Aconitase family (aconitate hydratase) Tthe_2229 PF00682 HMGL-like Tthe_2230 PF03123 CAT RNA binding domain Tthe_2230 PF00874 PRD domain Tthe_2231 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tthe_2231 PF02743 Cache domain Tthe_2231 PF00672 HAMP domain Tthe_2232 PF02885 Glycosyl transferase family, helical bundle domain Tthe_2232 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Tthe_2232 PF00591 Glycosyl transferase family, a/b domain Tthe_2233 PF01676 Metalloenzyme superfamily Tthe_2234 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Tthe_2235 PF07702 UTRA domain Tthe_2235 PF00392 Bacterial regulatory proteins, gntR family Tthe_2239 PF02608 ABC transporter substrate-binding protein PnrA-like Tthe_2240 PF04961 Formiminotransferase-cyclodeaminase Tthe_2241 PF07837 Formiminotransferase domain, N-terminal subdomain Tthe_2241 PF02971 Formiminotransferase domain Tthe_2243 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tthe_2243 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Tthe_2243 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tthe_2243 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tthe_2243 PF10371 Domain of unknown function Tthe_2244 PF00180 Isocitrate/isopropylmalate dehydrogenase Tthe_2256 PF02654 Cobalamin-5-phosphate synthase Tthe_2257 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Tthe_2258 PF00155 Aminotransferase class I and II Tthe_2261 PF03186 CobD/Cbib protein Tthe_2262 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tthe_2262 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tthe_2263 PF07685 CobB/CobQ-like glutamine amidotransferase domain Tthe_2263 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Tthe_2264 PF00005 ABC transporter Tthe_2265 PF01032 FecCD transport family Tthe_2266 PF01497 Periplasmic binding protein Tthe_2270 PF04754 Putative transposase, YhgA-like Tthe_2277 PF00665 Integrase core domain Tthe_2278 PF01695 IstB-like ATP binding protein Tthe_2279 PF00005 ABC transporter Tthe_2284 PF00005 ABC transporter Tthe_2294 PF02926 THUMP domain Tthe_2294 PF01170 Putative RNA methylase family UPF0020 Tthe_2295 PF13649 Methyltransferase domain Tthe_2297 PF01037 Lrp/AsnC ligand binding domain Tthe_2298 PF00155 Aminotransferase class I and II Tthe_2300 PF02421 Ferrous iron transport protein B Tthe_2300 PF07664 Ferrous iron transport protein B C terminus Tthe_2300 PF17910 FeoB cytosolic helical domain Tthe_2300 PF07670 Nucleoside recognition Tthe_2302 PF01569 PAP2 superfamily Tthe_2304 PF01297 Zinc-uptake complex component A periplasmic Tthe_2305 PF00005 ABC transporter Tthe_2306 PF00950 ABC 3 transport family Tthe_2310 PF00664 ABC transporter transmembrane region Tthe_2310 PF00005 ABC transporter Tthe_2312 PF04055 Radical SAM superfamily Tthe_2312 PF06463 Molybdenum Cofactor Synthesis C Tthe_2313 PF00005 ABC transporter Tthe_2315 PF00005 ABC transporter Tthe_2316 PF02687 FtsX-like permease family Tthe_2319 PF02687 FtsX-like permease family Tthe_2323 PF04055 Radical SAM superfamily Tthe_2323 PF06463 Molybdenum Cofactor Synthesis C Tthe_2324 PF00196 Bacterial regulatory proteins, luxR family Tthe_2324 PF00072 Response regulator receiver domain Tthe_2333 PF01548 Transposase Tthe_2333 PF02371 Transposase IS116/IS110/IS902 family Tthe_2338 PF00665 Integrase core domain Tthe_2339 PF01695 IstB-like ATP binding protein Tthe_2341 PF16916 Dimerisation domain of Zinc Transporter Tthe_2341 PF01545 Cation efflux family Tthe_2344 PF01207 Dihydrouridine synthase (Dus) Tthe_2345 PF00149 Calcineurin-like phosphoesterase Tthe_2345 PF02872 5'-nucleotidase, C-terminal domain Tthe_2346 PF13580 SIS domain Tthe_2348 PF02378 Phosphotransferase system, EIIC Tthe_2348 PF00367 phosphotransferase system, EIIB Tthe_2349 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Tthe_2350 PF01418 Helix-turn-helix domain, rpiR family Tthe_2350 PF01380 SIS domain Tthe_2351 PF02056 Family 4 glycosyl hydrolase Tthe_2351 PF11975 Family 4 glycosyl hydrolase C-terminal domain Tthe_2353 PF00041 Fibronectin type III domain Tthe_2353 PF00704 Glycosyl hydrolases family 18 Tthe_2355 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Tthe_2357 PF02378 Phosphotransferase system, EIIC Tthe_2358 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_2359 PF03610 PTS system fructose IIA component Tthe_2359 PF00158 Sigma-54 interaction domain Tthe_2359 PF00874 PRD domain Tthe_2360 PF13520 Amino acid permease Tthe_2361 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Tthe_2364 PF13603 Leucyl-tRNA synthetase, Domain 2 Tthe_2364 PF00133 tRNA synthetases class I (I, L, M and V) Tthe_2364 PF08264 Anticodon-binding domain of tRNA Tthe_2364 PF09334 tRNA synthetases class I (M) Tthe_2367 PF00912 Transglycosylase Tthe_2367 PF00905 Penicillin binding protein transpeptidase domain Tthe_2368 PF00155 Aminotransferase class I and II Tthe_2369 PF02653 Branched-chain amino acid transport system / permease component Tthe_2370 PF00005 ABC transporter Tthe_2371 PF13407 Periplasmic binding protein domain Tthe_2372 PF13407 Periplasmic binding protein domain Tthe_2373 PF00072 Response regulator receiver domain Tthe_2373 PF12833 Helix-turn-helix domain Tthe_2374 PF06580 Histidine kinase Tthe_2374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2374 PF07694 5TMR of 5TMR-LYT Tthe_2376 PF01385 Probable transposase Tthe_2376 PF12323 Helix-turn-helix domain Tthe_2376 PF07282 Putative transposase DNA-binding domain Tthe_2377 PF17099 Tryptophan transporter TrpP Tthe_2379 PF02653 Branched-chain amino acid transport system / permease component Tthe_2380 PF00005 ABC transporter Tthe_2381 PF13407 Periplasmic binding protein domain Tthe_2383 PF04962 KduI/IolB family Tthe_2384 PF00356 Bacterial regulatory proteins, lacI family Tthe_2387 PF01232 Mannitol dehydrogenase Rossmann domain Tthe_2387 PF08125 Mannitol dehydrogenase C-terminal domain Tthe_2388 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tthe_2388 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tthe_2389 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tthe_2389 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tthe_2390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tthe_2390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tthe_2392 PF08220 DeoR-like helix-turn-helix domain Tthe_2392 PF00455 DeoR C terminal sensor domain Tthe_2394 PF01554 MatE Tthe_2395 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Tthe_2395 PF08666 SAF domain Tthe_2396 PF01232 Mannitol dehydrogenase Rossmann domain Tthe_2396 PF08125 Mannitol dehydrogenase C-terminal domain Tthe_2397 PF02056 Family 4 glycosyl hydrolase Tthe_2397 PF11975 Family 4 glycosyl hydrolase C-terminal domain Tthe_2398 PF00295 Glycosyl hydrolases family 28 Tthe_2399 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2400 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2402 PF07470 Glycosyl Hydrolase Family 88 Tthe_2403 PF00356 Bacterial regulatory proteins, lacI family Tthe_2404 PF02614 Glucuronate isomerase Tthe_2407 PF01476 LysM domain Tthe_2407 PF00877 NlpC/P60 family Tthe_2409 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_2409 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Tthe_2412 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Tthe_2412 PF00056 lactate/malate dehydrogenase, NAD binding domain Tthe_2416 PF09335 SNARE associated Golgi protein Tthe_2417 PF00534 Glycosyl transferases group 1 Tthe_2417 PF13439 Glycosyltransferase Family 4 Tthe_2418 PF01636 Phosphotransferase enzyme family Tthe_2418 PF18085 Maltokinase N-terminal cap domain Tthe_2419 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Tthe_2419 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Tthe_2422 PF01145 SPFH domain / Band 7 family Tthe_2424 PF11975 Family 4 glycosyl hydrolase C-terminal domain Tthe_2424 PF02056 Family 4 glycosyl hydrolase Tthe_2430 PF06100 MCRA family Tthe_2432 PF09861 Lactate racemase N-terminal domain Tthe_2433 PF10996 Beta-Casp domain Tthe_2433 PF00753 Metallo-beta-lactamase superfamily Tthe_2433 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tthe_2434 PF01557 Fumarylacetoacetate (FAA) hydrolase family Tthe_2435 PF18152 DAHP synthase ferredoxin-like domain Tthe_2435 PF00793 DAHP synthetase I family Tthe_2438 PF00588 SpoU rRNA Methylase family Tthe_2440 PF01554 MatE Tthe_2441 PF00817 impB/mucB/samB family Tthe_2441 PF11799 impB/mucB/samB family C-terminal domain Tthe_2441 PF11798 IMS family HHH motif Tthe_2442 PF01022 Bacterial regulatory protein, arsR family Tthe_2443 PF00403 Heavy-metal-associated domain Tthe_2448 PF01402 Ribbon-helix-helix protein, copG family Tthe_2448 PF08753 NikR C terminal nickel binding domain Tthe_2449 PF13190 PDGLE domain Tthe_2449 PF01891 Cobalt uptake substrate-specific transmembrane region Tthe_2450 PF01891 Cobalt uptake substrate-specific transmembrane region Tthe_2450 PF13190 PDGLE domain Tthe_2452 PF00005 ABC transporter Tthe_2455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tthe_2455 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_2456 PF04542 Sigma-70 region 2 Tthe_2456 PF08281 Sigma-70, region 4 Tthe_2459 PF01842 ACT domain Tthe_2459 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tthe_2459 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tthe_2460 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Tthe_2463 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Tthe_2463 PF08666 SAF domain Tthe_2464 PF02502 Ribose/Galactose Isomerase Tthe_2465 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Tthe_2465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Tthe_2466 PF01081 KDPG and KHG aldolase Tthe_2467 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tthe_2467 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tthe_2469 PF03830 PTS system sorbose subfamily IIB component Tthe_2470 PF03613 PTS system mannose/fructose/sorbose family IID component Tthe_2472 PF03830 PTS system sorbose subfamily IIB component Tthe_2472 PF03610 PTS system fructose IIA component Tthe_2473 PF00874 PRD domain Tthe_2473 PF03610 PTS system fructose IIA component Tthe_2473 PF00158 Sigma-54 interaction domain Tthe_2478 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Tthe_2482 PF00294 pfkB family carbohydrate kinase Tthe_2484 PF00356 Bacterial regulatory proteins, lacI family Tthe_2485 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Tthe_2485 PF00753 Metallo-beta-lactamase superfamily Tthe_2485 PF10996 Beta-Casp domain Tthe_2486 PF01047 MarR family Tthe_2486 PF00480 ROK family Tthe_2488 PF02653 Branched-chain amino acid transport system / permease component Tthe_2489 PF00005 ABC transporter Tthe_2490 PF13407 Periplasmic binding protein domain Tthe_2491 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Tthe_2491 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Tthe_2492 PF01261 Xylose isomerase-like TIM barrel Tthe_2493 PF13538 UvrD-like helicase C-terminal domain Tthe_2494 PF00561 alpha/beta hydrolase fold Tthe_2494 PF08386 TAP-like protein Tthe_2495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Tthe_2495 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_2499 PF12708 Pectate lyase superfamily protein Tthe_2499 PF09992 Phosphodiester glycosidase Tthe_2500 PF00465 Iron-containing alcohol dehydrogenase Tthe_2501 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Tthe_2501 PF02743 Cache domain Tthe_2501 PF00672 HAMP domain Tthe_2505 PF03023 Lipid II flippase MurJ Tthe_2506 PF07977 FabA-like domain Tthe_2508 PF00460 Flagella basal body rod protein Tthe_2508 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tthe_2509 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Tthe_2509 PF00460 Flagella basal body rod protein Tthe_2511 PF12116 Stage III sporulation protein D Tthe_2513 PF08486 Stage II sporulation protein Tthe_2521 PF01546 Peptidase family M20/M25/M40 Tthe_2522 PF13520 Amino acid permease Tthe_2524 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tthe_2526 PF02350 UDP-N-acetylglucosamine 2-epimerase Tthe_2527 PF00953 Glycosyl transferase family 4 Tthe_2530 PF02502 Ribose/Galactose Isomerase Tthe_2531 PF01451 Low molecular weight phosphotyrosine protein phosphatase Tthe_2532 PF01300 Telomere recombination Tthe_2532 PF03481 Putative GTP-binding controlling metal-binding Tthe_2533 PF02535 ZIP Zinc transporter Tthe_2534 PF00472 RF-1 domain Tthe_2534 PF03462 PCRF domain Tthe_2535 PF05175 Methyltransferase small domain Tthe_2535 PF17827 PrmC N-terminal domain Tthe_2536 PF07136 Protein of unknown function (DUF1385) Tthe_2537 PF00265 Thymidine kinase Tthe_2538 PF01197 Ribosomal protein L31 Tthe_2539 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Tthe_2539 PF07497 Rho termination factor, RNA-binding domain Tthe_2539 PF07498 Rho termination factor, N-terminal domain Tthe_2540 PF00923 Transaldolase/Fructose-6-phosphate aldolase Tthe_2541 PF01116 Fructose-bisphosphate aldolase class-II Tthe_2542 PF00486 Transcriptional regulatory protein, C terminal Tthe_2542 PF00072 Response regulator receiver domain Tthe_2543 PF04122 Putative cell wall binding repeat 2 Tthe_2543 PF01520 N-acetylmuramoyl-L-alanine amidase Tthe_2544 PF01571 Aminomethyltransferase folate-binding domain Tthe_2544 PF08669 Glycine cleavage T-protein C-terminal barrel domain Tthe_2544 PF07992 Pyridine nucleotide-disulphide oxidoreductase Tthe_2544 PF17806 Sarcosine oxidase A3 domain Tthe_2546 PF00664 ABC transporter transmembrane region Tthe_2546 PF00005 ABC transporter Tthe_2547 PF00664 ABC transporter transmembrane region Tthe_2547 PF00005 ABC transporter Tthe_2550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_2550 PF02378 Phosphotransferase system, EIIC Tthe_2551 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Tthe_2551 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Tthe_2552 PF00294 pfkB family carbohydrate kinase Tthe_2553 PF08220 DeoR-like helix-turn-helix domain Tthe_2553 PF00455 DeoR C terminal sensor domain Tthe_2558 PF00535 Glycosyl transferase family 2 Tthe_2564 PF00512 His Kinase A (phospho-acceptor) domain Tthe_2564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2564 PF00672 HAMP domain Tthe_2565 PF00486 Transcriptional regulatory protein, C terminal Tthe_2565 PF00072 Response regulator receiver domain Tthe_2568 PF01040 UbiA prenyltransferase family Tthe_2572 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tthe_2574 PF07690 Major Facilitator Superfamily Tthe_2576 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tthe_2577 PF00873 AcrB/AcrD/AcrF family Tthe_2580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Tthe_2583 PF00395 S-layer homology domain Tthe_2587 PF00117 Glutamine amidotransferase class-I Tthe_2587 PF06418 CTP synthase N-terminus Tthe_2588 PF02811 PHP domain Tthe_2593 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tthe_2593 PF01842 ACT domain Tthe_2593 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Tthe_2594 PF00266 Aminotransferase class-V Tthe_2595 PF02595 Glycerate kinase family Tthe_2596 PF17820 PDZ domain Tthe_2596 PF03572 Peptidase family S41 Tthe_2596 PF01471 Putative peptidoglycan binding domain Tthe_2597 PF00288 GHMP kinases N terminal domain Tthe_2597 PF08544 GHMP kinases C terminal Tthe_2598 PF00291 Pyridoxal-phosphate dependent enzyme Tthe_2599 PF01842 ACT domain Tthe_2599 PF00742 Homoserine dehydrogenase Tthe_2599 PF03447 Homoserine dehydrogenase, NAD binding domain Tthe_2602 PF00753 Metallo-beta-lactamase superfamily Tthe_2603 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Tthe_2603 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Tthe_2603 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Tthe_2604 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Tthe_2605 PF00664 ABC transporter transmembrane region Tthe_2605 PF00005 ABC transporter Tthe_2606 PF00005 ABC transporter Tthe_2606 PF00664 ABC transporter transmembrane region Tthe_2607 PF01047 MarR family Tthe_2609 PF00654 Voltage gated chloride channel Tthe_2611 PF09827 CRISPR associated protein Cas2 Tthe_2612 PF01867 CRISPR associated protein Cas1 Tthe_2617 PF02018 Carbohydrate binding domain Tthe_2617 PF00331 Glycosyl hydrolase family 10 Tthe_2617 PF00395 S-layer homology domain Tthe_2617 PF06452 Carbohydrate family 9 binding domain-like Tthe_2620 PF18019 HD domain Tthe_2620 PF00270 DEAD/DEAH box helicase Tthe_2620 PF18395 Cas3 C-terminal domain Tthe_2628 PF03787 RAMP superfamily Tthe_2635 PF01592 NifU-like N terminal domain Tthe_2636 PF00266 Aminotransferase class-V Tthe_2637 PF01458 Uncharacterized protein family (UPF0051) Tthe_2638 PF01458 Uncharacterized protein family (UPF0051) Tthe_2639 PF00005 ABC transporter Tthe_2640 PF00166 Chaperonin 10 Kd subunit Tthe_2641 PF00462 Glutaredoxin Tthe_2642 PF08141 Small acid-soluble spore protein H family Tthe_2646 PF00171 Aldehyde dehydrogenase family Tthe_2646 PF00465 Iron-containing alcohol dehydrogenase Tthe_2647 PF03063 Prismane/CO dehydrogenase family Tthe_2648 PF00248 Aldo/keto reductase family Tthe_2652 PF01869 BadF/BadG/BcrA/BcrD ATPase family Tthe_2653 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Tthe_2653 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Tthe_2654 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2655 PF00528 Binding-protein-dependent transport system inner membrane component Tthe_2656 PF01547 Bacterial extracellular solute-binding protein Tthe_2657 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2657 PF06580 Histidine kinase Tthe_2657 PF00672 HAMP domain Tthe_2657 PF02743 Cache domain Tthe_2658 PF12833 Helix-turn-helix domain Tthe_2658 PF00072 Response regulator receiver domain Tthe_2672 PF09957 Bacterial antitoxin of type II TA system, VapB Tthe_2680 PF13180 PDZ domain Tthe_2681 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tthe_2685 PF00672 HAMP domain Tthe_2685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2685 PF00512 His Kinase A (phospho-acceptor) domain Tthe_2685 PF13426 PAS domain Tthe_2686 PF00486 Transcriptional regulatory protein, C terminal Tthe_2686 PF00072 Response regulator receiver domain Tthe_2688 PF01476 LysM domain Tthe_2688 PF01551 Peptidase family M23 Tthe_2688 PF08525 Opacity-associated protein A N-terminal motif Tthe_2697 PF09827 CRISPR associated protein Cas2 Tthe_2698 PF01867 CRISPR associated protein Cas1 Tthe_2703 PF18019 HD domain Tthe_2706 PF04754 Putative transposase, YhgA-like Tthe_2715 PF00709 Adenylosuccinate synthetase Tthe_2719 PF00672 HAMP domain Tthe_2719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2719 PF00512 His Kinase A (phospho-acceptor) domain Tthe_2719 PF13426 PAS domain Tthe_2721 PF00512 His Kinase A (phospho-acceptor) domain Tthe_2721 PF00672 HAMP domain Tthe_2721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tthe_2722 PF00072 Response regulator receiver domain Tthe_2722 PF00486 Transcriptional regulatory protein, C terminal Tthe_2723 PF01566 Natural resistance-associated macrophage protein Tthe_2724 PF03448 MgtE intracellular N domain Tthe_2724 PF01769 Divalent cation transporter Tthe_2724 PF00571 CBS domain Tthe_2727 PF00027 Cyclic nucleotide-binding domain Tthe_2727 PF13545 Crp-like helix-turn-helix domain Tthe_2728 PF03796 DnaB-like helicase C terminal domain Tthe_2728 PF00772 DnaB-like helicase N terminal domain Tthe_2729 PF01281 Ribosomal protein L9, N-terminal domain Tthe_2729 PF03948 Ribosomal protein L9, C-terminal domain Tthe_2730 PF01368 DHH family Tthe_2730 PF02272 DHHA1 domain Tthe_2733 PF01084 Ribosomal protein S18 Tthe_2734 PF00436 Single-strand binding protein family Tthe_2735 PF01250 Ribosomal protein S6 Tthe_2736 PF06107 Bacterial protein of unknown function (DUF951) Tthe_2737 PF00924 Mechanosensitive ion channel Tthe_2739 PF06866 Protein of unknown function (DUF1256) Tthe_2740 PF02875 Mur ligase family, glutamate ligase domain Tthe_2740 PF08245 Mur ligase middle domain Tthe_2740 PF08443 RimK-like ATP-grasp domain Tthe_2741 PF03575 Peptidase family S51 Tthe_2742 PF00781 Diacylglycerol kinase catalytic domain Tthe_2744 PF00266 Aminotransferase class-V Tthe_2745 PF06968 Biotin and Thiamin Synthesis associated domain Tthe_2745 PF04055 Radical SAM superfamily Tthe_2746 PF17762 HTH domain found in ParB protein Tthe_2746 PF02195 ParB-like nuclease domain Tthe_2747 PF13614 AAA domain Tthe_2749 PF00293 NUDIX domain Tthe_2750 PF02527 rRNA small subunit methyltransferase G Tthe_2751 PF13932 GidA associated domain Tthe_2751 PF01134 Glucose inhibited division protein A Tthe_2752 PF12631 MnmE helical domain Tthe_2752 PF01926 50S ribosome-binding GTPase Tthe_2752 PF10396 GTP-binding protein TrmE N-terminus Tthe_2753 PF01424 R3H domain Tthe_2753 PF14804 Jag N-terminus Tthe_2754 PF02096 60Kd inner membrane protein Tthe_2755 PF01809 Putative membrane protein insertion efficiency factor Tthe_2756 PF00825 Ribonuclease P Tthe_2757 PF00468 Ribosomal protein L34