Tthe_0001 SM00382 ATPases associated with a variety of cellular activities Tthe_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Tthe_0002 SM00480 DNA polymerase III beta subunit Tthe_0003 SM00363 S4 RNA-binding domain Tthe_0008 SM00387 Histidine kinase-like ATPases Tthe_0008 SM00433 TopoisomeraseII Tthe_0009 SM00434 DNA Topoisomerase IV Tthe_0010 SM00900 Tthe_0010 Tthe_0017 SM01329 Tthe_0017 Tthe_0034 SM00421 helix_turn_helix, Lux Regulon Tthe_0043 SM00382 ATPases associated with a variety of cellular activities Tthe_0049 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tthe_0049 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Tthe_0049 SM00091 PAS domain Tthe_0049 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_0049 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_0050 SM00382 ATPases associated with a variety of cellular activities Tthe_0052 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tthe_0052 SM00493 Tthe_0052 Tthe_0056 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_0065 SM00363 S4 RNA-binding domain Tthe_0067 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_0068 SM00849 Metallo-beta-lactamase superfamily Tthe_0071 SM00986 Uracil DNA glycosylase superfamily Tthe_0071 SM00987 UreE urease accessory protein, C-terminal domain Tthe_0089 SM00966 SpoVT / AbrB like domain Tthe_0094 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_0095 SM00382 ATPases associated with a variety of cellular activities Tthe_0104 SM00028 Tetratricopeptide repeats Tthe_0104 SM00530 Helix-turn-helix XRE-family like proteins Tthe_0109 SM01208 Tthe_0109 Tthe_0110 SM00650 Ribosomal RNA adenine dimethylases Tthe_0117 SM00382 ATPases associated with a variety of cellular activities Tthe_0132 SM00487 DEAD-like helicases superfamily Tthe_0132 SM00490 helicase superfamily c-terminal domain Tthe_0141 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_0142 SM00382 ATPases associated with a variety of cellular activities Tthe_0145 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_0167 SM01130 Tthe_0167 Tthe_0178 SM00670 Large family of predicted nucleotide-binding domains Tthe_0179 SM00966 SpoVT / AbrB like domain Tthe_0190 SM00354 helix_turn _helix lactose operon repressor Tthe_0195 SM01400 Tthe_0195 Tthe_0196 SM00448 cheY-homologous receiver domain Tthe_0196 SM00862 Transcriptional regulatory protein, C terminal Tthe_0197 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_0197 SM00387 Histidine kinase-like ATPases Tthe_0197 SM00388 His Kinase A (phosphoacceptor) domain Tthe_0198 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_0201 SM00487 DEAD-like helicases superfamily Tthe_0201 SM00490 helicase superfamily c-terminal domain Tthe_0201 SM00982 Tthe_0201 Tthe_0201 SM01058 CarD-like/TRCF domain Tthe_0203 SM00966 SpoVT / AbrB like domain Tthe_0206 SM00257 Lysin motif Tthe_0208 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_0208 SM00895 Tthe_0208 Tthe_0221 SM00836 DALR anticodon binding domain Tthe_0221 SM01016 Arginyl tRNA synthetase N terminal dom Tthe_0232 SM00014 Acid phosphatase homologues Tthe_0235 SM00487 DEAD-like helicases superfamily Tthe_0235 SM00490 helicase superfamily c-terminal domain Tthe_0240 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tthe_0244 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Tthe_0245 SM00851 MGS-like domain Tthe_0245 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Tthe_0248 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tthe_0249 SM00450 Rhodanese Homology Domain Tthe_0258 SM00028 Tetratricopeptide repeats Tthe_0258 SM00530 Helix-turn-helix XRE-family like proteins Tthe_0260 SM00411 bacterial (prokaryotic) histone like domain Tthe_0261 SM00363 S4 RNA-binding domain Tthe_0265 SM00116 Domain in cystathionine beta-synthase and other proteins. Tthe_0265 SM01131 Tthe_0265 Tthe_0268 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_0270 SM00857 Resolvase, N terminal domain Tthe_0272 SM00530 Helix-turn-helix XRE-family like proteins Tthe_0273 SM00530 Helix-turn-helix XRE-family like proteins Tthe_0315 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Tthe_0316 SM00382 ATPases associated with a variety of cellular activities Tthe_0322 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tthe_0330 SM00646 Tthe_0330 Tthe_0335 SM00382 ATPases associated with a variety of cellular activities Tthe_0338 SM00890 Domain of unknown function Tthe_0344 SM00382 ATPases associated with a variety of cellular activities Tthe_0356 SM00331 Sigma factor PP2C-like phosphatases Tthe_0358 SM00220 Serine/Threonine protein kinases, catalytic domain Tthe_0359 SM00977 TilS substrate C-terminal domain Tthe_0361 SM00382 ATPases associated with a variety of cellular activities Tthe_0362 SM00342 helix_turn_helix, arabinose operon control protein Tthe_0364 SM00091 PAS domain Tthe_0364 SM00387 Histidine kinase-like ATPases Tthe_0364 SM00388 His Kinase A (phosphoacceptor) domain Tthe_0390 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Tthe_0390 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Tthe_0391 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tthe_0391 SM00267 diguanylate cyclase Tthe_0394 SM00838 Elongation factor G C-terminus Tthe_0394 SM00889 Elongation factor G, domain IV Tthe_0395 SM00919 Malic enzyme, NAD binding domain Tthe_0395 SM01274 Tthe_0395 Tthe_0400 SM00382 ATPases associated with a variety of cellular activities Tthe_0400 SM01086 C-terminal, D2-small domain, of ClpB protein Tthe_0401 SM00382 ATPases associated with a variety of cellular activities Tthe_0403 SM00670 Large family of predicted nucleotide-binding domains Tthe_0411 SM00840 Tthe_0411 Tthe_0413 SM00967 RNA 2'-O ribose methyltransferase substrate binding Tthe_0419 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Tthe_0419 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tthe_0420 SM00649 Ribosomal protein L11/L12 Tthe_0425 SM00663 RNA polymerase I subunit A N-terminus Tthe_0429 SM00838 Elongation factor G C-terminus Tthe_0429 SM00889 Elongation factor G, domain IV Tthe_0431 SM01403 Tthe_0431 Tthe_0435 SM01382 Tthe_0435 Tthe_0435 SM01383 Tthe_0435 Tthe_0438 SM00322 K homology RNA-binding domain Tthe_0442 SM01374 Tthe_0442 Tthe_0443 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tthe_0456 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_0460 SM00363 S4 RNA-binding domain Tthe_0460 SM01390 Tthe_0460 Tthe_0461 SM00662 RNA polymerases D Tthe_0463 SM00382 ATPases associated with a variety of cellular activities Tthe_0464 SM00382 ATPases associated with a variety of cellular activities Tthe_0470 SM00382 ATPases associated with a variety of cellular activities Tthe_0478 SM00257 Lysin motif Tthe_0479 SM00646 Tthe_0479 Tthe_0480 SM00382 ATPases associated with a variety of cellular activities Tthe_0482 SM00460 Transglutaminase/protease-like homologues Tthe_0491 SM00563 Phosphate acyltransferases Tthe_0506 SM00530 Helix-turn-helix XRE-family like proteins Tthe_0527 SM00257 Lysin motif Tthe_0533 SM00382 ATPases associated with a variety of cellular activities Tthe_0537 SM01005 Alanine racemase, C-terminal domain Tthe_0552 SM01068 Putative carbohydrate binding domain Tthe_0553 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_0556 SM00244 prohibitin homologues Tthe_0577 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tthe_0581 SM01207 Tthe_0581 Tthe_0582 SM00226 Low molecular weight phosphatase family Tthe_0583 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tthe_0590 SM00091 PAS domain Tthe_0590 SM00382 ATPases associated with a variety of cellular activities Tthe_0592 SM01120 Tthe_0592 Tthe_0594 SM00849 Metallo-beta-lactamase superfamily Tthe_0600 SM00382 ATPases associated with a variety of cellular activities Tthe_0602 SM00842 Cell division protein FtsA Tthe_0607 SM00382 ATPases associated with a variety of cellular activities Tthe_0613 SM00382 ATPases associated with a variety of cellular activities Tthe_0620 SM00382 ATPases associated with a variety of cellular activities Tthe_0623 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_0623 SM00245 tail specific protease Tthe_0624 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_0626 SM00487 DEAD-like helicases superfamily Tthe_0626 SM00490 helicase superfamily c-terminal domain Tthe_0627 SM00382 ATPases associated with a variety of cellular activities Tthe_0628 SM00240 Forkhead associated domain Tthe_0631 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tthe_0631 SM00465 GIY-YIG type nucleases (URI domain) Tthe_0633 SM01061 CAT RNA binding domain Tthe_0637 SM00481 DNA polymerase alpha chain like domain Tthe_0640 SM00354 helix_turn _helix lactose operon repressor Tthe_0646 SM00382 ATPases associated with a variety of cellular activities Tthe_0656 SM00813 Alpha-L-arabinofuranosidase C-terminus Tthe_0662 SM00812 Alpha-L-fucosidase Tthe_0668 SM01007 Class II Aldolase and Adducin N-terminal domain Tthe_0670 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_0675 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Tthe_0680 SM00419 helix_turn_helix, cAMP Regulatory protein Tthe_0681 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_0685 SM00422 helix_turn_helix, mercury resistance Tthe_0692 SM00382 ATPases associated with a variety of cellular activities Tthe_0693 SM00342 helix_turn_helix, arabinose operon control protein Tthe_0696 SM01217 Tthe_0696 Tthe_0705 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Tthe_0718 SM00534 ATPase domain of DNA mismatch repair MUTS family Tthe_0719 SM00534 ATPase domain of DNA mismatch repair MUTS family Tthe_0720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tthe_0720 SM00481 DNA polymerase alpha chain like domain Tthe_0720 SM00483 DNA polymerase X family Tthe_0725 SM00746 metallochaperone-like domain Tthe_0735 SM00746 metallochaperone-like domain Tthe_0740 SM00387 Histidine kinase-like ATPases Tthe_0740 SM00388 His Kinase A (phosphoacceptor) domain Tthe_0741 SM00382 ATPases associated with a variety of cellular activities Tthe_0741 SM00448 cheY-homologous receiver domain Tthe_0748 SM00481 DNA polymerase alpha chain like domain Tthe_0751 SM00060 Fibronectin type 3 domain Tthe_0751 SM00632 Tthe_0751 Tthe_0751 SM00642 Alpha-amylase domain Tthe_0751 SM01065 Starch binding domain Tthe_0763 SM00642 Alpha-amylase domain Tthe_0767 SM00116 Domain in cystathionine beta-synthase and other proteins. Tthe_0768 SM00481 DNA polymerase alpha chain like domain Tthe_0782 SM00470 ParB-like nuclease domain Tthe_0783 SM00470 ParB-like nuclease domain Tthe_0801 SM00670 Large family of predicted nucleotide-binding domains Tthe_0802 SM00966 SpoVT / AbrB like domain Tthe_0810 SM00644 Tthe_0810 Tthe_0811 SM00257 Lysin motif Tthe_0813 SM00857 Resolvase, N terminal domain Tthe_0815 SM00857 Resolvase, N terminal domain Tthe_0817 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tthe_0827 SM00966 SpoVT / AbrB like domain Tthe_0828 SM00670 Large family of predicted nucleotide-binding domains Tthe_0830 SM00488 Tthe_0830 Tthe_0830 SM00491 Tthe_0830 Tthe_0834 SM00363 S4 RNA-binding domain Tthe_0834 SM01390 Tthe_0834 Tthe_0842 SM00900 Tthe_0842 Tthe_0849 SM01018 B12 binding domain Tthe_0875 SM00422 helix_turn_helix, mercury resistance Tthe_0879 SM00518 AP endonuclease family 2 Tthe_0883 SM00382 ATPases associated with a variety of cellular activities Tthe_0883 SM00994 ClpX C4-type zinc finger Tthe_0883 SM01086 C-terminal, D2-small domain, of ClpB protein Tthe_0885 SM00382 ATPases associated with a variety of cellular activities Tthe_0885 SM00464 Found in ATP-dependent protease La (LON) Tthe_0895 SM00382 ATPases associated with a variety of cellular activities Tthe_0901 SM00382 ATPases associated with a variety of cellular activities Tthe_0903 SM00028 Tetratricopeptide repeats Tthe_0921 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_0926 SM00028 Tetratricopeptide repeats Tthe_0932 SM00487 DEAD-like helicases superfamily Tthe_0932 SM00490 helicase superfamily c-terminal domain Tthe_0950 SM00487 DEAD-like helicases superfamily Tthe_0950 SM00490 helicase superfamily c-terminal domain Tthe_0955 SM00670 Large family of predicted nucleotide-binding domains Tthe_0957 SM01321 Tthe_0957 Tthe_0974 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_0974 SM00895 Tthe_0974 Tthe_0985 SM00342 helix_turn_helix, arabinose operon control protein Tthe_0985 SM00448 cheY-homologous receiver domain Tthe_0986 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_0992 SM00633 Glycosyl hydrolase family 10 Tthe_0993 SM00633 Glycosyl hydrolase family 10 Tthe_1006 SM00382 ATPases associated with a variety of cellular activities Tthe_1017 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Tthe_1017 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Tthe_1023 SM00831 Cation transporter/ATPase, N-terminus Tthe_1025 SM00562 Tthe_1025 Tthe_1029 SM00849 Metallo-beta-lactamase superfamily Tthe_1031 SM00014 Acid phosphatase homologues Tthe_1035 SM01001 AIR carboxylase Tthe_1060 SM01130 Tthe_1060 Tthe_1061 SM00859 Semialdehyde dehydrogenase, NAD binding domain Tthe_1064 SM01230 Tthe_1064 Tthe_1065 SM00448 cheY-homologous receiver domain Tthe_1065 SM01012 Tthe_1065 Tthe_1072 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_1075 SM00636 Tthe_1075 Tthe_1087 SM00857 Resolvase, N terminal domain Tthe_1090 SM00100 Cyclic nucleotide-monophosphate binding domain Tthe_1090 SM00419 helix_turn_helix, cAMP Regulatory protein Tthe_1094 SM00636 Tthe_1094 Tthe_1101 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Tthe_1101 SM00475 5'-3' exonuclease Tthe_1101 SM00482 DNA polymerase A domain Tthe_1107 SM00287 Bacterial SH3 domain homologues Tthe_1108 SM00838 Elongation factor G C-terminus Tthe_1115 SM00481 DNA polymerase alpha chain like domain Tthe_1117 SM00387 Histidine kinase-like ATPases Tthe_1119 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Tthe_1120 SM00902 Iron hydrogenase small subunit Tthe_1120 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Tthe_1132 SM00851 MGS-like domain Tthe_1135 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1137 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_1144 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_1148 SM00936 Penicillin-binding protein 5, C-terminal domain Tthe_1149 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tthe_1161 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tthe_1164 SM00831 Cation transporter/ATPase, N-terminus Tthe_1166 SM00382 ATPases associated with a variety of cellular activities Tthe_1167 SM00347 helix_turn_helix multiple antibiotic resistance protein Tthe_1170 SM00849 Metallo-beta-lactamase superfamily Tthe_1171 SM00849 Metallo-beta-lactamase superfamily Tthe_1177 SM00646 Tthe_1177 Tthe_1181 SM00838 Elongation factor G C-terminus Tthe_1182 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1187 SM00271 DnaJ molecular chaperone homology domain Tthe_1190 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1197 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_1199 SM00014 Acid phosphatase homologues Tthe_1201 SM01133 Tthe_1201 Tthe_1203 SM00165 Ubiquitin associated domain Tthe_1209 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_1209 SM00357 Cold shock protein domain Tthe_1209 SM00955 Tthe_1209 Tthe_1211 SM01230 Tthe_1211 Tthe_1212 SM01321 Tthe_1212 Tthe_1219 SM00363 S4 RNA-binding domain Tthe_1237 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_1243 SM00861 Transketolase, pyrimidine binding domain Tthe_1246 SM00363 S4 RNA-binding domain Tthe_1253 SM00382 ATPases associated with a variety of cellular activities Tthe_1262 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tthe_1264 SM00732 Likely ribonuclease with RNase H fold. Tthe_1267 SM00849 Metallo-beta-lactamase superfamily Tthe_1274 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Tthe_1277 SM00382 ATPases associated with a variety of cellular activities Tthe_1278 SM00382 ATPases associated with a variety of cellular activities Tthe_1291 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Tthe_1295 SM00841 Elongation factor P, C-terminal Tthe_1295 SM01185 Tthe_1295 Tthe_1297 SM00382 ATPases associated with a variety of cellular activities Tthe_1314 SM00861 Transketolase, pyrimidine binding domain Tthe_1315 SM00363 S4 RNA-binding domain Tthe_1319 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_1320 SM00448 cheY-homologous receiver domain Tthe_1331 SM00936 Penicillin-binding protein 5, C-terminal domain Tthe_1333 SM00387 Histidine kinase-like ATPases Tthe_1345 SM00936 Penicillin-binding protein 5, C-terminal domain Tthe_1348 SM00363 S4 RNA-binding domain Tthe_1353 SM00257 Lysin motif Tthe_1357 SM00855 Phosphoglycerate mutase family Tthe_1361 SM00563 Phosphate acyltransferases Tthe_1363 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_1365 SM00138 Methyltransferase, chemotaxis proteins Tthe_1366 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1368 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tthe_1368 SM00534 ATPase domain of DNA mismatch repair MUTS family Tthe_1369 SM00853 MutL C terminal dimerisation domain Tthe_1369 SM01340 Tthe_1369 Tthe_1377 SM00382 ATPases associated with a variety of cellular activities Tthe_1379 SM00998 Adenylosuccinate lyase C-terminus Tthe_1381 SM00481 DNA polymerase alpha chain like domain Tthe_1384 SM00322 K homology RNA-binding domain Tthe_1384 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_1389 SM00933 Tthe_1389 Tthe_1391 SM00382 ATPases associated with a variety of cellular activities Tthe_1392 SM00852 Probable molybdopterin binding domain Tthe_1394 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1395 SM00382 ATPases associated with a variety of cellular activities Tthe_1395 SM00843 Tthe_1395 Tthe_1403 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_1403 SM00322 K homology RNA-binding domain Tthe_1404 SM01387 Tthe_1404 Tthe_1405 SM00904 Riboflavin kinase Tthe_1412 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_1414 SM00479 Tthe_1414 Tthe_1414 SM00481 DNA polymerase alpha chain like domain Tthe_1417 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_1431 SM00260 Two component signalling adaptor domain Tthe_1432 SM00073 Histidine Phosphotransfer domain Tthe_1432 SM00260 Two component signalling adaptor domain Tthe_1432 SM00387 Histidine kinase-like ATPases Tthe_1432 SM01231 Tthe_1432 Tthe_1435 SM00382 ATPases associated with a variety of cellular activities Tthe_1435 SM00962 SRP54-type protein, GTPase domain Tthe_1442 SM00448 cheY-homologous receiver domain Tthe_1452 SM00382 ATPases associated with a variety of cellular activities Tthe_1460 SM00382 ATPases associated with a variety of cellular activities Tthe_1460 SM01086 C-terminal, D2-small domain, of ClpB protein Tthe_1462 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Tthe_1462 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Tthe_1462 SM00493 Tthe_1462 Tthe_1467 SM00382 ATPases associated with a variety of cellular activities Tthe_1474 SM00382 ATPases associated with a variety of cellular activities Tthe_1474 SM00962 SRP54-type protein, GTPase domain Tthe_1474 SM00963 SRP54-type protein, helical bundle domain Tthe_1480 SM00421 helix_turn_helix, Lux Regulon Tthe_1482 SM00382 ATPases associated with a variety of cellular activities Tthe_1486 SM00382 ATPases associated with a variety of cellular activities Tthe_1486 SM00962 SRP54-type protein, GTPase domain Tthe_1486 SM00963 SRP54-type protein, helical bundle domain Tthe_1487 SM00968 SMC proteins Flexible Hinge Domain Tthe_1490 SM00358 Double-stranded RNA binding motif Tthe_1490 SM00535 Ribonuclease III family Tthe_1491 SM00825 Beta-ketoacyl synthase Tthe_1493 SM00822 Tthe_1493 Tthe_1494 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Tthe_1511 SM00487 DEAD-like helicases superfamily Tthe_1511 SM00490 helicase superfamily c-terminal domain Tthe_1512 SM01120 Tthe_1512 Tthe_1512 SM01121 Tthe_1512 Tthe_1517 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Tthe_1520 SM00220 Serine/Threonine protein kinases, catalytic domain Tthe_1520 SM00740 Tthe_1520 Tthe_1521 SM00331 Sigma factor PP2C-like phosphatases Tthe_1521 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Tthe_1528 SM00487 DEAD-like helicases superfamily Tthe_1528 SM00490 helicase superfamily c-terminal domain Tthe_1530 SM01409 Tthe_1530 Tthe_1531 SM00072 Guanylate kinase homologues. Tthe_1538 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Tthe_1542 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Tthe_1548 SM00849 Metallo-beta-lactamase superfamily Tthe_1550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_1550 SM00954 Region found in RelA / SpoT proteins Tthe_1561 SM01323 Tthe_1561 Tthe_1566 SM00382 ATPases associated with a variety of cellular activities Tthe_1567 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tthe_1570 SM00260 Two component signalling adaptor domain Tthe_1574 SM00881 CoA binding domain Tthe_1586 SM00382 ATPases associated with a variety of cellular activities Tthe_1591 SM00232 JAB/MPN domain Tthe_1595 SM01004 Delta-aminolevulinic acid dehydratase Tthe_1601 SM00382 ATPases associated with a variety of cellular activities Tthe_1602 SM00382 ATPases associated with a variety of cellular activities Tthe_1606 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1608 SM00422 helix_turn_helix, mercury resistance Tthe_1610 SM01211 Tthe_1610 Tthe_1613 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1613 SM00387 Histidine kinase-like ATPases Tthe_1613 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1614 SM00448 cheY-homologous receiver domain Tthe_1614 SM00862 Transcriptional regulatory protein, C terminal Tthe_1625 SM00257 Lysin motif Tthe_1627 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1627 SM00387 Histidine kinase-like ATPases Tthe_1627 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1628 SM00448 cheY-homologous receiver domain Tthe_1628 SM00862 Transcriptional regulatory protein, C terminal Tthe_1642 SM00849 Metallo-beta-lactamase superfamily Tthe_1647 SM00506 Appr-1"-p processing enzyme Tthe_1650 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1653 SM00636 Tthe_1653 Tthe_1654 SM00881 CoA binding domain Tthe_1658 SM00893 Electron transfer flavoprotein domain Tthe_1659 SM00893 Electron transfer flavoprotein domain Tthe_1664 SM00893 Electron transfer flavoprotein domain Tthe_1665 SM00893 Electron transfer flavoprotein domain Tthe_1667 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_1667 SM00895 Tthe_1667 Tthe_1668 SM00530 Helix-turn-helix XRE-family like proteins Tthe_1700 SM00382 ATPases associated with a variety of cellular activities Tthe_1701 SM00382 ATPases associated with a variety of cellular activities Tthe_1706 SM00100 Cyclic nucleotide-monophosphate binding domain Tthe_1707 SM00382 ATPases associated with a variety of cellular activities Tthe_1724 SM00382 ATPases associated with a variety of cellular activities Tthe_1727 SM00354 helix_turn _helix lactose operon repressor Tthe_1732 SM00829 Enoylreductase Tthe_1737 SM00382 ATPases associated with a variety of cellular activities Tthe_1741 SM01207 Tthe_1741 Tthe_1749 SM00382 ATPases associated with a variety of cellular activities Tthe_1753 SM00091 PAS domain Tthe_1753 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1753 SM00387 Histidine kinase-like ATPases Tthe_1753 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1754 SM00448 cheY-homologous receiver domain Tthe_1754 SM00862 Transcriptional regulatory protein, C terminal Tthe_1760 SM00864 Tubulin/FtsZ family, GTPase domain Tthe_1760 SM00865 Tubulin/FtsZ family, C-terminal domain Tthe_1761 SM00842 Cell division protein FtsA Tthe_1772 SM00740 Tthe_1772 Tthe_1780 SM00981 Tthe_1780 Tthe_1794 SM00421 helix_turn_helix, Lux Regulon Tthe_1794 SM00448 cheY-homologous receiver domain Tthe_1797 SM00463 Small MutS-related domain Tthe_1797 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Tthe_1797 SM00534 ATPase domain of DNA mismatch repair MUTS family Tthe_1800 SM00873 B3/4 domain Tthe_1800 SM00874 tRNA synthetase B5 domain Tthe_1800 SM00896 Ferredoxin-fold anticodon binding domain Tthe_1802 SM00967 RNA 2'-O ribose methyltransferase substrate binding Tthe_1808 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Tthe_1812 SM00267 diguanylate cyclase Tthe_1812 SM00448 cheY-homologous receiver domain Tthe_1816 SM00938 Nitrogen regulatory protein P-II Tthe_1824 SM00382 ATPases associated with a variety of cellular activities Tthe_1833 SM00382 ATPases associated with a variety of cellular activities Tthe_1834 SM00382 ATPases associated with a variety of cellular activities Tthe_1850 SM00347 helix_turn_helix multiple antibiotic resistance protein Tthe_1856 SM00382 ATPases associated with a variety of cellular activities Tthe_1861 SM00938 Nitrogen regulatory protein P-II Tthe_1862 SM00938 Nitrogen regulatory protein P-II Tthe_1867 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1879 SM00382 ATPases associated with a variety of cellular activities Tthe_1882 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1882 SM00387 Histidine kinase-like ATPases Tthe_1882 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1883 SM00448 cheY-homologous receiver domain Tthe_1883 SM00862 Transcriptional regulatory protein, C terminal Tthe_1886 SM00382 ATPases associated with a variety of cellular activities Tthe_1889 SM00448 cheY-homologous receiver domain Tthe_1889 SM00850 LytTr DNA-binding domain Tthe_1890 SM00387 Histidine kinase-like ATPases Tthe_1899 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Tthe_1907 SM00861 Transketolase, pyrimidine binding domain Tthe_1909 SM00829 Enoylreductase Tthe_1910 SM00829 Enoylreductase Tthe_1918 SM00354 helix_turn _helix lactose operon repressor Tthe_1921 SM00642 Alpha-amylase domain Tthe_1923 SM00642 Alpha-amylase domain Tthe_1924 SM00640 Glycosyl hydrolases family 32 Tthe_1934 SM00354 helix_turn _helix lactose operon repressor Tthe_1938 SM00354 helix_turn _helix lactose operon repressor Tthe_1947 SM00831 Cation transporter/ATPase, N-terminus Tthe_1957 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_1959 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1959 SM00387 Histidine kinase-like ATPases Tthe_1959 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1960 SM00448 cheY-homologous receiver domain Tthe_1960 SM00862 Transcriptional regulatory protein, C terminal Tthe_1964 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_1964 SM00876 Biotin and Thiamin Synthesis associated domain Tthe_1973 SM00448 cheY-homologous receiver domain Tthe_1974 SM00091 PAS domain Tthe_1974 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1974 SM00387 Histidine kinase-like ATPases Tthe_1974 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_1980 SM00387 Histidine kinase-like ATPases Tthe_1980 SM00388 His Kinase A (phosphoacceptor) domain Tthe_1981 SM00448 cheY-homologous receiver domain Tthe_1981 SM00862 Transcriptional regulatory protein, C terminal Tthe_1992 SM00382 ATPases associated with a variety of cellular activities Tthe_1993 SM00357 Cold shock protein domain Tthe_2001 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Tthe_2003 SM00636 Tthe_2003 Tthe_2004 SM00849 Metallo-beta-lactamase superfamily Tthe_2013 SM00400 zinc finger Tthe_2013 SM00493 Tthe_2013 Tthe_2014 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_2017 SM01192 Tthe_2017 Tthe_2017 SM01193 Tthe_2017 Tthe_2021 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Tthe_2027 SM01208 Tthe_2027 Tthe_2028 SM00478 endonuclease III Tthe_2028 SM00525 Tthe_2028 Tthe_2053 SM00917 LeuA allosteric (dimerisation) domain Tthe_2063 SM00028 Tetratricopeptide repeats Tthe_2066 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tthe_2068 SM00382 ATPases associated with a variety of cellular activities Tthe_2074 SM00563 Phosphate acyltransferases Tthe_2079 SM00646 Tthe_2079 Tthe_2081 SM00382 ATPases associated with a variety of cellular activities Tthe_2082 SM00382 ATPases associated with a variety of cellular activities Tthe_2087 SM00845 GatB domain Tthe_2090 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Tthe_2090 SM00292 breast cancer carboxy-terminal domain Tthe_2090 SM00532 Ligase N family Tthe_2098 SM00382 ATPases associated with a variety of cellular activities Tthe_2098 SM00930 Tthe_2098 Tthe_2107 SM01209 Tthe_2107 Tthe_2107 SM01210 Tthe_2107 Tthe_2108 SM00798 AICARFT/IMPCHase bienzyme Tthe_2108 SM00851 MGS-like domain Tthe_2113 SM01001 AIR carboxylase Tthe_2116 SM00116 Domain in cystathionine beta-synthase and other proteins. Tthe_2116 SM01240 Tthe_2116 Tthe_2118 SM00883 Chaperonin 10 Kd subunit Tthe_2125 SM00382 ATPases associated with a variety of cellular activities Tthe_2131 SM00382 ATPases associated with a variety of cellular activities Tthe_2132 SM00382 ATPases associated with a variety of cellular activities Tthe_2133 SM00028 Tetratricopeptide repeats Tthe_2133 SM00530 Helix-turn-helix XRE-family like proteins Tthe_2134 SM00382 ATPases associated with a variety of cellular activities Tthe_2136 SM00382 ATPases associated with a variety of cellular activities Tthe_2145 SM00478 endonuclease III Tthe_2147 SM00387 Histidine kinase-like ATPases Tthe_2148 SM00448 cheY-homologous receiver domain Tthe_2148 SM00850 LytTr DNA-binding domain Tthe_2150 SM00881 CoA binding domain Tthe_2153 SM00382 ATPases associated with a variety of cellular activities Tthe_2165 SM00316 Ribosomal protein S1-like RNA-binding domain Tthe_2165 SM00732 Likely ribonuclease with RNase H fold. Tthe_2167 SM00957 SecA DEAD-like domain Tthe_2167 SM00958 SecA preprotein cross-linking domain Tthe_2171 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_2174 SM00382 ATPases associated with a variety of cellular activities Tthe_2176 SM00062 Bacterial periplasmic substrate-binding proteins Tthe_2176 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Tthe_2186 SM00382 ATPases associated with a variety of cellular activities Tthe_2187 SM00028 Tetratricopeptide repeats Tthe_2200 SM00382 ATPases associated with a variety of cellular activities Tthe_2202 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Tthe_2210 SM00909 Sporulation and spore germination Tthe_2211 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2211 SM00387 Histidine kinase-like ATPases Tthe_2211 SM00388 His Kinase A (phosphoacceptor) domain Tthe_2212 SM00448 cheY-homologous receiver domain Tthe_2212 SM00862 Transcriptional regulatory protein, C terminal Tthe_2214 SM00354 helix_turn _helix lactose operon repressor Tthe_2225 SM00854 Bacterial capsule synthesis protein PGA_cap Tthe_2231 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tthe_2232 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Tthe_2235 SM00345 helix_turn_helix gluconate operon transcriptional repressor Tthe_2235 SM00866 Tthe_2235 Tthe_2238 SM00382 ATPases associated with a variety of cellular activities Tthe_2241 SM01221 Tthe_2241 Tthe_2241 SM01222 Tthe_2241 Tthe_2243 SM00890 Domain of unknown function Tthe_2244 SM01329 Tthe_2244 Tthe_2248 SM00900 Tthe_2248 Tthe_2251 SM00271 DnaJ molecular chaperone homology domain Tthe_2264 SM00382 ATPases associated with a variety of cellular activities Tthe_2278 SM00382 ATPases associated with a variety of cellular activities Tthe_2279 SM00382 ATPases associated with a variety of cellular activities Tthe_2284 SM00382 ATPases associated with a variety of cellular activities Tthe_2294 SM00981 Tthe_2294 Tthe_2297 SM00344 helix_turn_helix ASNC type Tthe_2301 SM00899 Tthe_2301 Tthe_2302 SM00014 Acid phosphatase homologues Tthe_2305 SM00382 ATPases associated with a variety of cellular activities Tthe_2310 SM00382 ATPases associated with a variety of cellular activities Tthe_2312 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_2313 SM00382 ATPases associated with a variety of cellular activities Tthe_2315 SM00382 ATPases associated with a variety of cellular activities Tthe_2323 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_2324 SM00421 helix_turn_helix, Lux Regulon Tthe_2339 SM00382 ATPases associated with a variety of cellular activities Tthe_2345 SM00287 Bacterial SH3 domain homologues Tthe_2345 SM00854 Bacterial capsule synthesis protein PGA_cap Tthe_2353 SM00495 Chitin-binding domain type 3 Tthe_2353 SM00636 Tthe_2353 Tthe_2359 SM00382 ATPases associated with a variety of cellular activities Tthe_2370 SM00382 ATPases associated with a variety of cellular activities Tthe_2373 SM00448 cheY-homologous receiver domain Tthe_2374 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2380 SM00382 ATPases associated with a variety of cellular activities Tthe_2384 SM00354 helix_turn _helix lactose operon repressor Tthe_2388 SM01350 Tthe_2388 Tthe_2392 SM00420 helix_turn_helix, Deoxyribose operon repressor Tthe_2392 SM01134 Tthe_2392 Tthe_2395 SM00858 Tthe_2395 Tthe_2398 SM00710 Parallel beta-helix repeats Tthe_2403 SM00354 helix_turn _helix lactose operon repressor Tthe_2407 SM00257 Lysin motif Tthe_2422 SM00244 prohibitin homologues Tthe_2433 SM00849 Metallo-beta-lactamase superfamily Tthe_2433 SM01027 Beta-Casp domain Tthe_2442 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Tthe_2452 SM00382 ATPases associated with a variety of cellular activities Tthe_2463 SM00858 Tthe_2463 Tthe_2465 SM01350 Tthe_2465 Tthe_2473 SM00382 ATPases associated with a variety of cellular activities Tthe_2484 SM00354 helix_turn _helix lactose operon repressor Tthe_2485 SM00849 Metallo-beta-lactamase superfamily Tthe_2485 SM01027 Beta-Casp domain Tthe_2487 SM01217 Tthe_2487 Tthe_2489 SM00382 ATPases associated with a variety of cellular activities Tthe_2501 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tthe_2501 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2516 SM00060 Fibronectin type 3 domain Tthe_2516 SM00429 ig-like, plexins, transcription factors Tthe_2531 SM00226 Low molecular weight phosphatase family Tthe_2534 SM00937 Tthe_2534 Tthe_2539 SM00357 Cold shock protein domain Tthe_2539 SM00382 ATPases associated with a variety of cellular activities Tthe_2539 SM00959 Rho termination factor, N-terminal domain Tthe_2542 SM00448 cheY-homologous receiver domain Tthe_2543 SM00646 Tthe_2543 Tthe_2546 SM00382 ATPases associated with a variety of cellular activities Tthe_2547 SM00382 ATPases associated with a variety of cellular activities Tthe_2553 SM00420 helix_turn_helix, Deoxyribose operon repressor Tthe_2553 SM01134 Tthe_2553 Tthe_2564 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2564 SM00387 Histidine kinase-like ATPases Tthe_2564 SM00388 His Kinase A (phosphoacceptor) domain Tthe_2565 SM00448 cheY-homologous receiver domain Tthe_2565 SM00862 Transcriptional regulatory protein, C terminal Tthe_2569 SM00481 DNA polymerase alpha chain like domain Tthe_2575 SM00347 helix_turn_helix multiple antibiotic resistance protein Tthe_2596 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_2596 SM00245 tail specific protease Tthe_2602 SM00849 Metallo-beta-lactamase superfamily Tthe_2605 SM00382 ATPases associated with a variety of cellular activities Tthe_2606 SM00382 ATPases associated with a variety of cellular activities Tthe_2607 SM00347 helix_turn_helix multiple antibiotic resistance protein Tthe_2620 SM00487 DEAD-like helicases superfamily Tthe_2639 SM00382 ATPases associated with a variety of cellular activities Tthe_2640 SM00883 Chaperonin 10 Kd subunit Tthe_2657 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2658 SM00342 helix_turn_helix, arabinose operon control protein Tthe_2658 SM00448 cheY-homologous receiver domain Tthe_2676 SM00670 Large family of predicted nucleotide-binding domains Tthe_2677 SM00966 SpoVT / AbrB like domain Tthe_2680 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Tthe_2685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2685 SM00387 Histidine kinase-like ATPases Tthe_2685 SM00388 His Kinase A (phosphoacceptor) domain Tthe_2686 SM00448 cheY-homologous receiver domain Tthe_2686 SM00862 Transcriptional regulatory protein, C terminal Tthe_2688 SM00257 Lysin motif Tthe_2688 SM01208 Tthe_2688 Tthe_2690 SM00382 ATPases associated with a variety of cellular activities Tthe_2703 SM00487 DEAD-like helicases superfamily Tthe_2703 SM00490 helicase superfamily c-terminal domain Tthe_2715 SM00788 Adenylosuccinate synthetase Tthe_2719 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Tthe_2719 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2721 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Tthe_2721 SM00387 Histidine kinase-like ATPases Tthe_2721 SM00388 His Kinase A (phosphoacceptor) domain Tthe_2722 SM00448 cheY-homologous receiver domain Tthe_2722 SM00862 Transcriptional regulatory protein, C terminal Tthe_2724 SM00116 Domain in cystathionine beta-synthase and other proteins. Tthe_2724 SM00924 MgtE intracellular N domain Tthe_2727 SM00100 Cyclic nucleotide-monophosphate binding domain Tthe_2727 SM00419 helix_turn_helix, cAMP Regulatory protein Tthe_2728 SM00382 ATPases associated with a variety of cellular activities Tthe_2742 SM00046 Diacylglycerol kinase catalytic domain (presumed) Tthe_2745 SM00729 Elongator protein 3, MiaB family, Radical SAM Tthe_2745 SM00876 Biotin and Thiamin Synthesis associated domain Tthe_2746 SM00470 ParB-like nuclease domain Tthe_2748 SM00470 ParB-like nuclease domain Tthe_2751 SM01228 Tthe_2751 Tthe_2753 SM00393 Putative single-stranded nucleic acids-binding domain Tthe_2753 SM01245 Tthe_2753 Tthe_2755 SM01234 Tthe_2755