locus-tag class description Thethe_00001 PF00308 Bacterial dnaA protein Thethe_00001 PF08299 Bacterial dnaA protein helix-turn-helix Thethe_00001 PF11638 DnaA N-terminal domain Thethe_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain Thethe_00002 PF02767 DNA polymerase III beta subunit, central domain Thethe_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain Thethe_00004 PF02463 RecF/RecN/SMC N terminal domain Thethe_00006 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thethe_00007 PF08353 Domain of unknown function (DUF1727) Thethe_00007 PF08245 Mur ligase middle domain Thethe_00008 PF00204 DNA gyrase B Thethe_00008 PF00986 DNA gyrase B subunit, carboxyl terminus Thethe_00008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_00008 PF01751 Toprim domain Thethe_00009 PF00521 DNA gyrase/topoisomerase IV, subunit A Thethe_00009 PF03989 DNA gyrase C-terminal domain, beta-propeller Thethe_00012 PF10369 Small subunit of acetolactate synthase Thethe_00013 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thethe_00013 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thethe_00014 PF00682 HMGL-like Thethe_00015 PF00330 Aconitase family (aconitate hydratase) Thethe_00016 PF00694 Aconitase C-terminal domain Thethe_00017 PF00180 Isocitrate/isopropylmalate dehydrogenase Thethe_00018 PF00920 Dehydratase family Thethe_00019 PF00205 Thiamine pyrophosphate enzyme, central domain Thethe_00019 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thethe_00019 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thethe_00020 PF01872 RibD C-terminal domain Thethe_00020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thethe_00021 PF00677 Lumazine binding domain Thethe_00022 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thethe_00022 PF00925 GTP cyclohydrolase II Thethe_00023 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thethe_00024 PF01594 AI-2E family transporter Thethe_00026 PF10502 Signal peptidase, peptidase S26 Thethe_00027 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thethe_00027 PF02403 Seryl-tRNA synthetase N-terminal domain Thethe_00031 PF03816 Cell envelope-related transcriptional attenuator domain Thethe_00032 PF03699 Uncharacterised protein family (UPF0182) Thethe_00037 PF14437 MafB19-like deaminase Thethe_00041 PF01966 HD domain Thethe_00042 PF12169 DNA polymerase III subunits gamma and tau domain III Thethe_00043 PF02575 YbaB/EbfC DNA-binding family Thethe_00044 PF00633 Helix-hairpin-helix motif Thethe_00044 PF02132 RecR protein Thethe_00044 PF13662 Toprim domain Thethe_00045 PF00742 Homoserine dehydrogenase Thethe_00045 PF01842 ACT domain Thethe_00045 PF03447 Homoserine dehydrogenase, NAD binding domain Thethe_00047 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thethe_00048 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thethe_00049 PF01966 HD domain Thethe_00059 PF00483 Nucleotidyl transferase Thethe_00062 PF01479 S4 domain Thethe_00062 PF00849 RNA pseudouridylate synthase Thethe_00063 PF02901 Pyruvate formate lyase-like Thethe_00063 PF01228 Glycine radical Thethe_00064 PF04055 Radical SAM superfamily Thethe_00065 PF00753 Metallo-beta-lactamase superfamily Thethe_00065 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thethe_00067 PF05681 Fumarate hydratase (Fumerase) Thethe_00069 PF03167 Uracil DNA glycosylase superfamily Thethe_00073 PF00480 ROK family Thethe_00074 PF13302 Acetyltransferase (GNAT) domain Thethe_00074 PF00117 Glutamine amidotransferase class-I Thethe_00074 PF00958 GMP synthase C terminal domain Thethe_00074 PF13673 Acetyltransferase (GNAT) domain Thethe_00074 PF03352 Methyladenine glycosylase Thethe_00077 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thethe_00077 PF01276 Orn/Lys/Arg decarboxylase, major domain Thethe_00078 PF02223 Thymidylate kinase Thethe_00079 PF06153 Cyclic-di-AMP receptor Thethe_00082 PF04468 PSP1 C-terminal conserved region Thethe_00084 PF01925 Sulfite exporter TauE/SafE Thethe_00087 PF05175 Methyltransferase small domain Thethe_00088 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thethe_00089 PF01545 Cation efflux family Thethe_00089 PF16916 Dimerisation domain of Zinc Transporter Thethe_00090 PF18277 AbrB C-terminal domain Thethe_00090 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thethe_00091 PF07670 Nucleoside recognition Thethe_00092 PF07670 Nucleoside recognition Thethe_00093 PF12627 Probable RNA and SrmB- binding site of polymerase A Thethe_00093 PF01966 HD domain Thethe_00093 PF01743 Poly A polymerase head domain Thethe_00094 PF08264 Anticodon-binding domain of tRNA Thethe_00094 PF01588 Putative tRNA binding domain Thethe_00094 PF09334 tRNA synthetases class I (M) Thethe_00099 PF01026 TatD related DNase Thethe_00101 PF07501 G5 domain Thethe_00101 PF06725 3D domain Thethe_00101 PF03990 G5-linked-Ubiquitin-like domain Thethe_00102 PF00398 Ribosomal RNA adenine dimethylase Thethe_00106 PF10609 NUBPL iron-transfer P-loop NTPase Thethe_00106 PF01883 Iron-sulfur cluster assembly protein Thethe_00109 PF01434 Peptidase family M41 Thethe_00109 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_00109 PF06480 FtsH Extracellular Thethe_00109 PF17862 AAA+ lid domain Thethe_00112 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thethe_00112 PF00361 Proton-conducting membrane transporter Thethe_00112 PF13244 Domain of unknown function (DUF4040) Thethe_00114 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thethe_00116 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thethe_00116 PF00374 Nickel-dependent hydrogenase Thethe_00117 PF12838 4Fe-4S dicluster domain Thethe_00118 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thethe_00119 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thethe_00120 PF07503 HypF finger Thethe_00120 PF01300 Telomere recombination Thethe_00120 PF17788 HypF Kae1-like domain Thethe_00120 PF00708 Acylphosphatase Thethe_00121 PF01455 HupF/HypC family Thethe_00122 PF01924 Hydrogenase formation hypA family Thethe_00123 PF02769 AIR synthase related protein, C-terminal domain Thethe_00123 PF00586 AIR synthase related protein, N-terminal domain Thethe_00124 PF07486 Cell Wall Hydrolase Thethe_00124 PF01471 Putative peptidoglycan binding domain Thethe_00126 PF00271 Helicase conserved C-terminal domain Thethe_00126 PF00270 DEAD/DEAH box helicase Thethe_00128 PF07702 UTRA domain Thethe_00128 PF00392 Bacterial regulatory proteins, gntR family Thethe_00129 PF00005 ABC transporter Thethe_00131 PF13419 Haloacid dehalogenase-like hydrolase Thethe_00133 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thethe_00133 PF13187 4Fe-4S dicluster domain Thethe_00133 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thethe_00134 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thethe_00134 PF00175 Oxidoreductase NAD-binding domain Thethe_00135 PF17179 4Fe-4S dicluster domain Thethe_00148 PF00701 Dihydrodipicolinate synthetase family Thethe_00150 PF00206 Lyase Thethe_00150 PF02655 ATP-grasp domain Thethe_00167 PF13171 Protein of unknown function (DUF4004) Thethe_00170 PF00011 Hsp20/alpha crystallin family Thethe_00172 PF00356 Bacterial regulatory proteins, lacI family Thethe_00173 PF08245 Mur ligase middle domain Thethe_00173 PF01225 Mur ligase family, catalytic domain Thethe_00173 PF02875 Mur ligase family, glutamate ligase domain Thethe_00174 PF00156 Phosphoribosyl transferase domain Thethe_00174 PF09182 Bacterial purine repressor, N-terminal Thethe_00175 PF04026 SpoVG Thethe_00176 PF00132 Bacterial transferase hexapeptide (six repeats) Thethe_00176 PF12804 MobA-like NTP transferase domain Thethe_00177 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thethe_00177 PF14572 Phosphoribosyl synthetase-associated domain Thethe_00178 PF00072 Response regulator receiver domain Thethe_00178 PF00486 Transcriptional regulatory protein, C terminal Thethe_00179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_00179 PF00512 His Kinase A (phospho-acceptor) domain Thethe_00179 PF00672 HAMP domain Thethe_00180 PF13180 PDZ domain Thethe_00181 PF01195 Peptidyl-tRNA hydrolase Thethe_00183 PF17757 UvrB interaction domain Thethe_00183 PF03461 TRCF domain Thethe_00183 PF00271 Helicase conserved C-terminal domain Thethe_00183 PF00270 DEAD/DEAH box helicase Thethe_00183 PF02559 CarD-like/TRCF domain Thethe_00185 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thethe_00185 PF15714 Stage V sporulation protein T C-terminal, transcription factor Thethe_00186 PF05582 YabG peptidase U57 Thethe_00187 PF06257 Biofilm formation stimulator VEG Thethe_00189 PF00288 GHMP kinases N terminal domain Thethe_00189 PF08544 GHMP kinases C terminal Thethe_00190 PF00392 Bacterial regulatory proteins, gntR family Thethe_00190 PF07729 FCD domain Thethe_00193 PF03323 Bacillus/Clostridium GerA spore germination protein Thethe_00194 PF03845 Spore germination protein Thethe_00195 PF05504 Spore germination B3/ GerAC like, C-terminal Thethe_00196 PF09551 Stage II sporulation protein R (spore_II_R) Thethe_00197 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thethe_00197 PF01276 Orn/Lys/Arg decarboxylase, major domain Thethe_00198 PF07486 Cell Wall Hydrolase Thethe_00198 PF01471 Putative peptidoglycan binding domain Thethe_00199 PF14620 YpeB sporulation Thethe_00199 PF03413 Peptidase propeptide and YPEB domain Thethe_00200 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thethe_00202 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00203 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00204 PF00356 Bacterial regulatory proteins, lacI family Thethe_00205 PF16338 Domain of unknown function (DUF4968) Thethe_00205 PF17137 Domain of unknown function (DUF5110) Thethe_00205 PF13802 Galactose mutarotase-like Thethe_00205 PF01055 Glycosyl hydrolases family 31 Thethe_00207 PF01820 D-ala D-ala ligase N-terminus Thethe_00207 PF07478 D-ala D-ala ligase C-terminus Thethe_00209 PF03485 Arginyl tRNA synthetase N terminal domain Thethe_00209 PF05746 DALR anticodon binding domain Thethe_00209 PF00750 tRNA synthetases class I (R) Thethe_00210 PF00488 MutS domain V Thethe_00210 PF05190 MutS family domain IV Thethe_00210 PF05192 MutS domain III Thethe_00210 PF05188 MutS domain II Thethe_00210 PF01624 MutS domain I Thethe_00212 PF00005 ABC transporter Thethe_00212 PF13732 Domain of unknown function (DUF4162) Thethe_00214 PF13520 Amino acid permease Thethe_00215 PF01212 Beta-eliminating lyase Thethe_00216 PF00248 Aldo/keto reductase family Thethe_00218 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Thethe_00218 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Thethe_00219 PF09515 Thiamine transporter protein (Thia_YuaJ) Thethe_00220 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Thethe_00220 PF04101 Glycosyltransferase family 28 C-terminal domain Thethe_00221 PF01569 PAP2 superfamily Thethe_00227 PF00905 Penicillin binding protein transpeptidase domain Thethe_00227 PF03717 Penicillin-binding Protein dimerisation domain Thethe_00228 PF09992 Phosphodiester glycosidase Thethe_00228 PF12708 Pectate lyase superfamily protein Thethe_00229 PF00271 Helicase conserved C-terminal domain Thethe_00229 PF00176 SNF2 family N-terminal domain Thethe_00229 PF04434 SWIM zinc finger Thethe_00237 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thethe_00237 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thethe_00238 PF01960 ArgJ family Thethe_00239 PF00696 Amino acid kinase family Thethe_00240 PF00202 Aminotransferase class-III Thethe_00241 PF00117 Glutamine amidotransferase class-I Thethe_00241 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thethe_00242 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thethe_00242 PF02142 MGS-like domain Thethe_00242 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thethe_00243 PF00764 Arginosuccinate synthase Thethe_00244 PF00206 Lyase Thethe_00244 PF14698 Argininosuccinate lyase C-terminal Thethe_00245 PF01022 Bacterial regulatory protein, arsR family Thethe_00246 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thethe_00246 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_00247 PF09335 SNARE associated Golgi protein Thethe_00249 PF01566 Natural resistance-associated macrophage protein Thethe_00250 PF01880 Desulfoferrodoxin Thethe_00250 PF06397 Desulfoferrodoxin, N-terminal domain Thethe_00251 PF10415 Fumarase C C-terminus Thethe_00251 PF00206 Lyase Thethe_00252 PF01926 50S ribosome-binding GTPase Thethe_00252 PF10396 GTP-binding protein TrmE N-terminus Thethe_00252 PF12631 MnmE helical domain Thethe_00253 PF07690 Major Facilitator Superfamily Thethe_00255 PF03819 MazG nucleotide pyrophosphohydrolase domain Thethe_00255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thethe_00256 PF00216 Bacterial DNA-binding protein Thethe_00257 PF01479 S4 domain Thethe_00258 PF08486 Stage II sporulation protein Thethe_00259 PF07873 YabP family Thethe_00261 PF00571 CBS domain Thethe_00261 PF02833 DHHA2 domain Thethe_00261 PF07085 DRTGG domain Thethe_00261 PF01368 DHH family Thethe_00264 PF00575 S1 RNA binding domain Thethe_00265 PF02541 Ppx/GppA phosphatase family Thethe_00265 PF01761 3-dehydroquinate synthase Thethe_00271 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thethe_00274 PF01043 SecA preprotein cross-linking domain Thethe_00274 PF07516 SecA Wing and Scaffold domain Thethe_00274 PF07517 SecA DEAD-like domain Thethe_00274 PF02810 SEC-C motif Thethe_00276 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Thethe_00276 PF02558 Ketopantoate reductase PanE/ApbA Thethe_00278 PF01520 N-acetylmuramoyl-L-alanine amidase Thethe_00280 PF00860 Permease family Thethe_00283 PF00005 ABC transporter Thethe_00284 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thethe_00285 PF00440 Bacterial regulatory proteins, tetR family Thethe_00285 PF08359 YsiA-like protein, C-terminal region Thethe_00286 PF10371 Domain of unknown function Thethe_00286 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thethe_00286 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thethe_00286 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thethe_00286 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thethe_00291 PF00005 ABC transporter Thethe_00293 PF08281 Sigma-70, region 4 Thethe_00294 PF05167 Uncharacterised ACR (DUF711) Thethe_00297 PF13847 Methyltransferase domain Thethe_00299 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_00302 PF08241 Methyltransferase domain Thethe_00304 PF07228 Stage II sporulation protein E (SpoIIE) Thethe_00307 PF01171 PP-loop family Thethe_00307 PF11734 TilS substrate C-terminal domain Thethe_00309 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_00309 PF17862 AAA+ lid domain Thethe_00309 PF06480 FtsH Extracellular Thethe_00309 PF01434 Peptidase family M41 Thethe_00312 PF13426 PAS domain Thethe_00312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_00312 PF13188 PAS domain Thethe_00312 PF00989 PAS fold Thethe_00312 PF00512 His Kinase A (phospho-acceptor) domain Thethe_00313 PF01268 Formate--tetrahydrofolate ligase Thethe_00316 PF01039 Carboxyl transferase domain Thethe_00318 PF00364 Biotin-requiring enzyme Thethe_00319 PF12822 ECF transporter, substrate-specific component Thethe_00320 PF03309 Type III pantothenate kinase Thethe_00322 PF03323 Bacillus/Clostridium GerA spore germination protein Thethe_00323 PF05504 Spore germination B3/ GerAC like, C-terminal Thethe_00327 PF00202 Aminotransferase class-III Thethe_00328 PF01272 Transcription elongation factor, GreA/GreB, C-term Thethe_00328 PF03449 Transcription elongation factor, N-terminal Thethe_00329 PF01336 OB-fold nucleic acid binding domain Thethe_00329 PF00152 tRNA synthetases class II (D, K and N) Thethe_00330 PF01227 GTP cyclohydrolase I Thethe_00331 PF00809 Pterin binding enzyme Thethe_00332 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thethe_00333 PF01242 6-pyruvoyl tetrahydropterin synthase Thethe_00334 PF17746 SfsA N-terminal OB domain Thethe_00334 PF03749 Sugar fermentation stimulation protein RE domain Thethe_00335 PF05979 Bacterial protein of unknown function (DUF896) Thethe_00337 PF00202 Aminotransferase class-III Thethe_00339 PF02867 Ribonucleotide reductase, barrel domain Thethe_00339 PF03477 ATP cone domain Thethe_00339 PF00317 Ribonucleotide reductase, all-alpha domain Thethe_00340 PF00990 Diguanylate cyclase, GGDEF domain Thethe_00342 PF05524 PEP-utilising enzyme, N-terminal Thethe_00342 PF02896 PEP-utilising enzyme, TIM barrel domain Thethe_00342 PF00391 PEP-utilising enzyme, mobile domain Thethe_00343 PF14492 Elongation Factor G, domain II Thethe_00343 PF03764 Elongation factor G, domain IV Thethe_00343 PF00679 Elongation factor G C-terminus Thethe_00343 PF00009 Elongation factor Tu GTP binding domain Thethe_00343 PF03144 Elongation factor Tu domain 2 Thethe_00344 PF03949 Malic enzyme, NAD binding domain Thethe_00344 PF00390 Malic enzyme, N-terminal domain Thethe_00346 PF17727 CtsR C-terminal dimerization domain Thethe_00346 PF05848 CtsR N-terminal HTH domain Thethe_00347 PF02151 UvrB/uvrC motif Thethe_00348 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Thethe_00349 PF17871 AAA lid domain Thethe_00349 PF02861 Clp amino terminal domain, pathogenicity island component Thethe_00349 PF10431 C-terminal, D2-small domain, of ClpB protein Thethe_00349 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_00349 PF07724 AAA domain (Cdc48 subfamily) Thethe_00350 PF18073 Rubredoxin metal binding domain Thethe_00353 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thethe_00355 PF02542 YgbB family Thethe_00356 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thethe_00356 PF03129 Anticodon binding domain Thethe_00356 PF04073 Aminoacyl-tRNA editing domain Thethe_00358 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thethe_00359 PF00132 Bacterial transferase hexapeptide (six repeats) Thethe_00360 PF01406 tRNA synthetases class I (C) catalytic domain Thethe_00360 PF09190 DALR domain Thethe_00361 PF00636 Ribonuclease III domain Thethe_00362 PF00588 SpoU rRNA Methylase family Thethe_00362 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thethe_00363 PF05991 YacP-like NYN domain Thethe_00364 PF04542 Sigma-70 region 2 Thethe_00364 PF08281 Sigma-70, region 4 Thethe_00366 PF03143 Elongation factor Tu C-terminal domain Thethe_00366 PF00009 Elongation factor Tu GTP binding domain Thethe_00366 PF03144 Elongation factor Tu domain 2 Thethe_00368 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Thethe_00369 PF00467 KOW motif Thethe_00369 PF02357 Transcription termination factor nusG Thethe_00370 PF03946 Ribosomal protein L11, N-terminal domain Thethe_00370 PF00298 Ribosomal protein L11, RNA binding domain Thethe_00371 PF00687 Ribosomal protein L1p/L10e family Thethe_00372 PF00466 Ribosomal protein L10 Thethe_00373 PF16320 Ribosomal protein L7/L12 dimerisation domain Thethe_00373 PF00542 Ribosomal protein L7/L12 C-terminal domain Thethe_00374 PF04560 RNA polymerase Rpb2, domain 7 Thethe_00374 PF04565 RNA polymerase Rpb2, domain 3 Thethe_00374 PF04563 RNA polymerase beta subunit Thethe_00374 PF04561 RNA polymerase Rpb2, domain 2 Thethe_00374 PF00562 RNA polymerase Rpb2, domain 6 Thethe_00374 PF10385 RNA polymerase beta subunit external 1 domain Thethe_00375 PF05000 RNA polymerase Rpb1, domain 4 Thethe_00375 PF04983 RNA polymerase Rpb1, domain 3 Thethe_00375 PF00623 RNA polymerase Rpb1, domain 2 Thethe_00375 PF04997 RNA polymerase Rpb1, domain 1 Thethe_00375 PF04998 RNA polymerase Rpb1, domain 5 Thethe_00377 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Thethe_00378 PF00164 Ribosomal protein S12/S23 Thethe_00379 PF00177 Ribosomal protein S7p/S5e Thethe_00380 PF00679 Elongation factor G C-terminus Thethe_00380 PF14492 Elongation Factor G, domain II Thethe_00380 PF03764 Elongation factor G, domain IV Thethe_00380 PF00009 Elongation factor Tu GTP binding domain Thethe_00380 PF03144 Elongation factor Tu domain 2 Thethe_00381 PF00009 Elongation factor Tu GTP binding domain Thethe_00381 PF03144 Elongation factor Tu domain 2 Thethe_00381 PF03143 Elongation factor Tu C-terminal domain Thethe_00382 PF00338 Ribosomal protein S10p/S20e Thethe_00383 PF00297 Ribosomal protein L3 Thethe_00384 PF00573 Ribosomal protein L4/L1 family Thethe_00385 PF00276 Ribosomal protein L23 Thethe_00386 PF00181 Ribosomal Proteins L2, RNA binding domain Thethe_00386 PF03947 Ribosomal Proteins L2, C-terminal domain Thethe_00387 PF00203 Ribosomal protein S19 Thethe_00388 PF00237 Ribosomal protein L22p/L17e Thethe_00389 PF00189 Ribosomal protein S3, C-terminal domain Thethe_00389 PF07650 KH domain Thethe_00390 PF00252 Ribosomal protein L16p/L10e Thethe_00391 PF00831 Ribosomal L29 protein Thethe_00392 PF00366 Ribosomal protein S17 Thethe_00393 PF00238 Ribosomal protein L14p/L23e Thethe_00394 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thethe_00394 PF00467 KOW motif Thethe_00395 PF00281 Ribosomal protein L5 Thethe_00395 PF00673 ribosomal L5P family C-terminus Thethe_00397 PF00410 Ribosomal protein S8 Thethe_00398 PF00347 Ribosomal protein L6 Thethe_00399 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thethe_00400 PF03719 Ribosomal protein S5, C-terminal domain Thethe_00400 PF00333 Ribosomal protein S5, N-terminal domain Thethe_00401 PF00327 Ribosomal protein L30p/L7e Thethe_00402 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Thethe_00403 PF00344 SecY translocase Thethe_00404 PF05191 Adenylate kinase, active site lid Thethe_00405 PF00557 Metallopeptidase family M24 Thethe_00407 PF01176 Translation initiation factor 1A / IF-1 Thethe_00408 PF00444 Ribosomal protein L36 Thethe_00409 PF00416 Ribosomal protein S13/S18 Thethe_00410 PF00411 Ribosomal protein S11 Thethe_00411 PF01479 S4 domain Thethe_00411 PF00163 Ribosomal protein S4/S9 N-terminal domain Thethe_00412 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thethe_00412 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thethe_00412 PF01000 RNA polymerase Rpb3/RpoA insert domain Thethe_00413 PF01196 Ribosomal protein L17 Thethe_00414 PF00005 ABC transporter Thethe_00415 PF00005 ABC transporter Thethe_00416 PF02361 Cobalt transport protein Thethe_00417 PF01416 tRNA pseudouridine synthase Thethe_00418 PF00572 Ribosomal protein L13 Thethe_00419 PF00380 Ribosomal protein S9/S16 Thethe_00429 PF00356 Bacterial regulatory proteins, lacI family Thethe_00433 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00434 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00436 PF08244 Glycosyl hydrolases family 32 C terminal Thethe_00436 PF00251 Glycosyl hydrolases family 32 N-terminal domain Thethe_00437 PF00294 pfkB family carbohydrate kinase Thethe_00443 PF00589 Phage integrase family Thethe_00444 PF02899 Phage integrase, N-terminal SAM-like domain Thethe_00444 PF00589 Phage integrase family Thethe_00445 PF00589 Phage integrase family Thethe_00445 PF02899 Phage integrase, N-terminal SAM-like domain Thethe_00451 PF08220 DeoR-like helix-turn-helix domain Thethe_00451 PF00455 DeoR C terminal sensor domain Thethe_00452 PF03437 BtpA family Thethe_00455 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thethe_00455 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thethe_00460 PF02796 Helix-turn-helix domain of resolvase Thethe_00460 PF00665 Integrase core domain Thethe_00462 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_00465 PF00005 ABC transporter Thethe_00466 PF12704 MacB-like periplasmic core domain Thethe_00466 PF00005 ABC transporter Thethe_00466 PF02687 FtsX-like permease family Thethe_00467 PF00465 Iron-containing alcohol dehydrogenase Thethe_00470 PF02511 Thymidylate synthase complementing protein Thethe_00474 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_00475 PF05257 CHAP domain Thethe_00475 PF01476 LysM domain Thethe_00476 PF08239 Bacterial SH3 domain Thethe_00476 PF01520 N-acetylmuramoyl-L-alanine amidase Thethe_00477 PF07726 ATPase family associated with various cellular activities (AAA) Thethe_00477 PF17863 AAA lid domain Thethe_00478 PF01882 Protein of unknown function DUF58 Thethe_00479 PF01841 Transglutaminase-like superfamily Thethe_00479 PF11992 Domain of unknown function (DUF3488) Thethe_00479 PF13559 Domain of unknown function (DUF4129) Thethe_00481 PF02457 DisA bacterial checkpoint controller nucleotide-binding Thethe_00488 PF01553 Acyltransferase Thethe_00489 PF11799 impB/mucB/samB family C-terminal domain Thethe_00489 PF00817 impB/mucB/samB family Thethe_00490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thethe_00490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thethe_00490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thethe_00490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thethe_00491 PF01380 SIS domain Thethe_00492 PF01638 HxlR-like helix-turn-helix Thethe_00503 PF06782 Uncharacterised protein family (UPF0236) Thethe_00517 PF00583 Acetyltransferase (GNAT) family Thethe_00520 PF01814 Hemerythrin HHE cation binding domain Thethe_00522 PF13538 UvrD-like helicase C-terminal domain Thethe_00523 PF01894 Uncharacterised protein family UPF0047 Thethe_00526 PF03853 YjeF-related protein N-terminus Thethe_00526 PF01256 Carbohydrate kinase Thethe_00528 PF00842 Alanine racemase, C-terminal domain Thethe_00528 PF01168 Alanine racemase, N-terminal domain Thethe_00530 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thethe_00535 PF03808 Glycosyl transferase WecB/TagA/CpsF family Thethe_00536 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thethe_00536 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thethe_00538 PF02445 Quinolinate synthetase A protein Thethe_00539 PF02910 Fumarate reductase flavoprotein C-term Thethe_00539 PF00890 FAD binding domain Thethe_00540 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thethe_00540 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thethe_00542 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_00543 PF00301 Rubredoxin Thethe_00544 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thethe_00544 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thethe_00548 PF01189 16S rRNA methyltransferase RsmB/F Thethe_00548 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Thethe_00548 PF17126 RsmF rRNA methyltransferase first C-terminal domain Thethe_00549 PF10091 Putative glucoamylase Thethe_00549 PF06165 Glycosyltransferase family 36 Thethe_00549 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thethe_00550 PF00392 Bacterial regulatory proteins, gntR family Thethe_00552 PF10086 YhfC intramembrane metalloprotease Thethe_00553 PF16200 C-terminal region of band_7 Thethe_00553 PF01145 SPFH domain / Band 7 family Thethe_00555 PF13393 Histidyl-tRNA synthetase Thethe_00556 PF01634 ATP phosphoribosyltransferase Thethe_00557 PF00815 Histidinol dehydrogenase Thethe_00558 PF00155 Aminotransferase class I and II Thethe_00559 PF00475 Imidazoleglycerol-phosphate dehydratase Thethe_00560 PF00117 Glutamine amidotransferase class-I Thethe_00561 PF00977 Histidine biosynthesis protein Thethe_00562 PF00977 Histidine biosynthesis protein Thethe_00563 PF01502 Phosphoribosyl-AMP cyclohydrolase Thethe_00563 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Thethe_00564 PF02585 GlcNAc-PI de-N-acetylase Thethe_00565 PF01244 Membrane dipeptidase (Peptidase family M19) Thethe_00566 PF00464 Serine hydroxymethyltransferase Thethe_00569 PF00483 Nucleotidyl transferase Thethe_00572 PF01522 Polysaccharide deacetylase Thethe_00574 PF01022 Bacterial regulatory protein, arsR family Thethe_00578 PF02660 Glycerol-3-phosphate acyltransferase Thethe_00579 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thethe_00580 PF01022 Bacterial regulatory protein, arsR family Thethe_00582 PF00230 Major intrinsic protein Thethe_00584 PF01266 FAD dependent oxidoreductase Thethe_00585 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_00585 PF04324 BFD-like [2Fe-2S] binding domain Thethe_00587 PF00989 PAS fold Thethe_00587 PF00158 Sigma-54 interaction domain Thethe_00587 PF02954 Bacterial regulatory protein, Fis family Thethe_00588 PF02733 Dak1 domain Thethe_00589 PF02734 DAK2 domain Thethe_00590 PF03610 PTS system fructose IIA component Thethe_00592 PF00012 Hsp70 protein Thethe_00597 PF17862 AAA+ lid domain Thethe_00597 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_00597 PF01434 Peptidase family M41 Thethe_00599 PF02491 SHS2 domain inserted in FTSA Thethe_00604 PF00005 ABC transporter Thethe_00607 PF14693 Ribosomal protein TL5, C-terminal domain Thethe_00607 PF01386 Ribosomal L25p family Thethe_00608 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thethe_00608 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thethe_00610 PF03459 TOBE domain Thethe_00610 PF00005 ABC transporter Thethe_00610 PF17912 MalK OB fold domain Thethe_00613 PF13247 4Fe-4S dicluster domain Thethe_00613 PF00037 4Fe-4S binding domain Thethe_00614 PF01645 Conserved region in glutamate synthase Thethe_00614 PF13187 4Fe-4S dicluster domain Thethe_00615 PF00310 Glutamine amidotransferases class-II Thethe_00616 PF13556 PucR C-terminal helix-turn-helix domain Thethe_00616 PF17853 GGDEF-like domain Thethe_00616 PF05651 Putative sugar diacid recognition Thethe_00617 PF00005 ABC transporter Thethe_00618 PF02687 FtsX-like permease family Thethe_00618 PF18075 FtsX extracellular domain Thethe_00619 PF04225 Opacity-associated protein A LysM-like domain Thethe_00619 PF01551 Peptidase family M23 Thethe_00620 PF03572 Peptidase family S41 Thethe_00620 PF13180 PDZ domain Thethe_00621 PF17820 PDZ domain Thethe_00622 PF04029 2-phosphosulpholactate phosphatase Thethe_00623 PF00271 Helicase conserved C-terminal domain Thethe_00623 PF04851 Type III restriction enzyme, res subunit Thethe_00623 PF02151 UvrB/uvrC motif Thethe_00623 PF12344 Ultra-violet resistance protein B Thethe_00623 PF17757 UvrB interaction domain Thethe_00624 PF17755 UvrA DNA-binding domain Thethe_00624 PF17760 UvrA interaction domain Thethe_00625 PF16697 Inner membrane component of T3SS, cytoplasmic domain Thethe_00626 PF01098 Cell cycle protein Thethe_00627 PF00905 Penicillin binding protein transpeptidase domain Thethe_00628 PF08459 UvrC Helix-hairpin-helix N-terminal Thethe_00628 PF02151 UvrB/uvrC motif Thethe_00628 PF01541 GIY-YIG catalytic domain Thethe_00629 PF00005 ABC transporter Thethe_00630 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00632 PF02237 Biotin protein ligase C terminal domain Thethe_00632 PF03099 Biotin/lipoate A/B protein ligase family Thethe_00632 PF08279 HTH domain Thethe_00633 PF03123 CAT RNA binding domain Thethe_00633 PF00874 PRD domain Thethe_00634 PF02378 Phosphotransferase system, EIIC Thethe_00634 PF00367 phosphotransferase system, EIIB Thethe_00634 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thethe_00635 PF00232 Glycosyl hydrolase family 1 Thethe_00636 PF07475 HPr Serine kinase C-terminal domain Thethe_00636 PF02603 HPr Serine kinase N terminus Thethe_00637 PF02811 PHP domain Thethe_00638 PF00480 ROK family Thethe_00639 PF13193 AMP-binding enzyme C-terminal domain Thethe_00639 PF00501 AMP-binding enzyme Thethe_00640 PF00356 Bacterial regulatory proteins, lacI family Thethe_00641 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thethe_00641 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thethe_00644 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thethe_00644 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thethe_00645 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thethe_00645 PF02929 Beta galactosidase small chain Thethe_00645 PF16353 Domain of unknown function(DUF4981) Thethe_00645 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Thethe_00645 PF00703 Glycosyl hydrolases family 2 Thethe_00646 PF03610 PTS system fructose IIA component Thethe_00646 PF00158 Sigma-54 interaction domain Thethe_00646 PF00874 PRD domain Thethe_00647 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thethe_00648 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Thethe_00649 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_00650 PF02378 Phosphotransferase system, EIIC Thethe_00652 PF00232 Glycosyl hydrolase family 1 Thethe_00653 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Thethe_00654 PF01547 Bacterial extracellular solute-binding protein Thethe_00655 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00656 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00657 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Thethe_00658 PF07944 Beta-L-arabinofuranosidase, GH127 Thethe_00659 PF16369 C-terminal lipocalin-like domain Thethe_00659 PF04616 Glycosyl hydrolases family 43 Thethe_00660 PF02610 L-arabinose isomerase Thethe_00660 PF11762 L-arabinose isomerase C-terminal domain Thethe_00661 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thethe_00661 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thethe_00662 PF00596 Class II Aldolase and Adducin N-terminal domain Thethe_00664 PF00392 Bacterial regulatory proteins, gntR family Thethe_00665 PF13685 Iron-containing alcohol dehydrogenase Thethe_00670 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Thethe_00670 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Thethe_00671 PF10509 Galactokinase galactose-binding signature Thethe_00671 PF00288 GHMP kinases N terminal domain Thethe_00671 PF08544 GHMP kinases C terminal Thethe_00672 PF16363 GDP-mannose 4,6 dehydratase Thethe_00673 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thethe_00673 PF00480 ROK family Thethe_00674 PF13180 PDZ domain Thethe_00675 PF00072 Response regulator receiver domain Thethe_00675 PF00486 Transcriptional regulatory protein, C terminal Thethe_00677 PF01547 Bacterial extracellular solute-binding protein Thethe_00679 PF01522 Polysaccharide deacetylase Thethe_00680 PF02424 ApbE family Thethe_00682 PF00905 Penicillin binding protein transpeptidase domain Thethe_00682 PF03793 PASTA domain Thethe_00682 PF03717 Penicillin-binding Protein dimerisation domain Thethe_00683 PF04679 ATP dependent DNA ligase C terminal region Thethe_00683 PF01068 ATP dependent DNA ligase domain Thethe_00683 PF13298 DNA polymerase Ligase (LigD) Thethe_00684 PF02735 Ku70/Ku80 beta-barrel domain Thethe_00685 PF00877 NlpC/P60 family Thethe_00685 PF01476 LysM domain Thethe_00686 PF00140 Sigma-70 factor, region 1.2 Thethe_00686 PF04542 Sigma-70 region 2 Thethe_00686 PF04539 Sigma-70 region 3 Thethe_00686 PF04545 Sigma-70, region 4 Thethe_00689 PF01757 Acyltransferase family Thethe_00690 PF13520 Amino acid permease Thethe_00694 PF04820 Tryptophan halogenase Thethe_00695 PF00403 Heavy-metal-associated domain Thethe_00696 PF00291 Pyridoxal-phosphate dependent enzyme Thethe_00704 PF14791 DNA polymerase beta thumb Thethe_00704 PF14716 Helix-hairpin-helix domain Thethe_00704 PF02811 PHP domain Thethe_00705 PF01053 Cys/Met metabolism PLP-dependent enzyme Thethe_00707 PF01790 Prolipoprotein diacylglyceryl transferase Thethe_00709 PF01551 Peptidase family M23 Thethe_00709 PF01476 LysM domain Thethe_00713 PF01566 Natural resistance-associated macrophage protein Thethe_00715 PF01209 ubiE/COQ5 methyltransferase family Thethe_00717 PF02683 Cytochrome C biogenesis protein transmembrane region Thethe_00721 PF00989 PAS fold Thethe_00721 PF00512 His Kinase A (phospho-acceptor) domain Thethe_00721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_00722 PF02954 Bacterial regulatory protein, Fis family Thethe_00722 PF00072 Response regulator receiver domain Thethe_00722 PF00158 Sigma-54 interaction domain Thethe_00726 PF00403 Heavy-metal-associated domain Thethe_00728 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thethe_00728 PF01565 FAD binding domain Thethe_00730 PF03668 P-loop ATPase protein family Thethe_00731 PF01933 Uncharacterised protein family UPF0052 Thethe_00732 PF13416 Bacterial extracellular solute-binding protein Thethe_00733 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00734 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00735 PF01547 Bacterial extracellular solute-binding protein Thethe_00736 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00737 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00740 PF13464 Domain of unknown function (DUF4115) Thethe_00741 PF00128 Alpha amylase, catalytic domain Thethe_00741 PF02903 Alpha amylase, N-terminal ig-like domain Thethe_00743 PF14527 WhiA LAGLIDADG-like domain Thethe_00743 PF10298 WhiA N-terminal LAGLIDADG-like domain Thethe_00743 PF02650 WhiA C-terminal HTH domain Thethe_00744 PF00381 PTS HPr component phosphorylation site Thethe_00745 PF07085 DRTGG domain Thethe_00745 PF00571 CBS domain Thethe_00745 PF03061 Thioesterase superfamily Thethe_00745 PF00392 Bacterial regulatory proteins, gntR family Thethe_00746 PF14579 Helix-hairpin-helix motif Thethe_00746 PF02811 PHP domain Thethe_00746 PF01336 OB-fold nucleic acid binding domain Thethe_00746 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thethe_00746 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thethe_00748 PF00365 Phosphofructokinase Thethe_00749 PF02887 Pyruvate kinase, alpha/beta domain Thethe_00749 PF00224 Pyruvate kinase, barrel domain Thethe_00749 PF00391 PEP-utilising enzyme, mobile domain Thethe_00751 PF09137 Glucodextranase, domain N Thethe_00751 PF00723 Glycosyl hydrolases family 15 Thethe_00752 PF05958 tRNA (Uracil-5-)-methyltransferase Thethe_00752 PF01938 TRAM domain Thethe_00755 PF00872 Transposase, Mutator family Thethe_00757 PF00293 NUDIX domain Thethe_00761 PF00881 Nitroreductase family Thethe_00773 PF13307 Helicase C-terminal domain Thethe_00773 PF06733 DEAD_2 Thethe_00774 PF01648 4'-phosphopantetheinyl transferase superfamily Thethe_00775 PF07634 RtxA repeat Thethe_00775 PF16671 Actin cross-linking domain Thethe_00775 PF11647 Membrane Localization Domain Thethe_00775 PF11713 Peptidase C80 family Thethe_00775 PF12146 Serine aminopeptidase, S33 Thethe_00776 PF07687 Peptidase dimerisation domain Thethe_00776 PF01546 Peptidase family M20/M25/M40 Thethe_00777 PF00163 Ribosomal protein S4/S9 N-terminal domain Thethe_00777 PF01479 S4 domain Thethe_00778 PF00881 Nitroreductase family Thethe_00781 PF00342 Phosphoglucose isomerase Thethe_00783 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thethe_00783 PF13237 4Fe-4S dicluster domain Thethe_00783 PF13375 RnfC Barrel sandwich hybrid domain Thethe_00783 PF10531 SLBB domain Thethe_00784 PF03116 NQR2, RnfD, RnfE family Thethe_00785 PF04205 FMN-binding domain Thethe_00786 PF02508 Rnf-Nqr subunit, membrane protein Thethe_00787 PF02508 Rnf-Nqr subunit, membrane protein Thethe_00788 PF04060 Putative Fe-S cluster Thethe_00791 PF02219 Methylenetetrahydrofolate reductase Thethe_00791 PF02574 Homocysteine S-methyltransferase Thethe_00792 PF02574 Homocysteine S-methyltransferase Thethe_00792 PF02965 Vitamin B12 dependent methionine synthase, activation domain Thethe_00792 PF00809 Pterin binding enzyme Thethe_00792 PF02310 B12 binding domain Thethe_00792 PF02607 B12 binding domain Thethe_00793 PF05067 Manganese containing catalase Thethe_00794 PF12652 CotJB protein Thethe_00797 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thethe_00798 PF01938 TRAM domain Thethe_00798 PF05958 tRNA (Uracil-5-)-methyltransferase Thethe_00808 PF03358 NADPH-dependent FMN reductase Thethe_00812 PF03079 ARD/ARD' family Thethe_00816 PF00248 Aldo/keto reductase family Thethe_00821 PF13411 MerR HTH family regulatory protein Thethe_00825 PF01261 Xylose isomerase-like TIM barrel Thethe_00826 PF00753 Metallo-beta-lactamase superfamily Thethe_00827 PF05697 Bacterial trigger factor protein (TF) Thethe_00827 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thethe_00827 PF05698 Bacterial trigger factor protein (TF) C-terminus Thethe_00828 PF00574 Clp protease Thethe_00829 PF06689 ClpX C4-type zinc finger Thethe_00829 PF10431 C-terminal, D2-small domain, of ClpB protein Thethe_00829 PF07724 AAA domain (Cdc48 subfamily) Thethe_00831 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_00831 PF05362 Lon protease (S16) C-terminal proteolytic domain Thethe_00831 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thethe_00832 PF01926 50S ribosome-binding GTPase Thethe_00833 PF00119 ATP synthase A chain Thethe_00834 PF00137 ATP synthase subunit C Thethe_00835 PF00430 ATP synthase B/B' CF(0) Thethe_00836 PF00213 ATP synthase delta (OSCP) subunit Thethe_00837 PF00306 ATP synthase alpha/beta chain, C terminal domain Thethe_00837 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thethe_00837 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thethe_00838 PF00231 ATP synthase Thethe_00839 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thethe_00839 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thethe_00840 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Thethe_00840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Thethe_00843 PF00795 Carbon-nitrogen hydrolase Thethe_00843 PF02540 NAD synthase Thethe_00844 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00845 PF00005 ABC transporter Thethe_00848 PF01680 SOR/SNZ family Thethe_00849 PF01174 SNO glutamine amidotransferase family Thethe_00856 PF01527 Transposase Thethe_00859 PF13439 Glycosyltransferase Family 4 Thethe_00859 PF00534 Glycosyl transferases group 1 Thethe_00860 PF00132 Bacterial transferase hexapeptide (six repeats) Thethe_00861 PF00534 Glycosyl transferases group 1 Thethe_00863 PF00534 Glycosyl transferases group 1 Thethe_00863 PF13439 Glycosyltransferase Family 4 Thethe_00864 PF00132 Bacterial transferase hexapeptide (six repeats) Thethe_00866 PF16363 GDP-mannose 4,6 dehydratase Thethe_00868 PF01370 NAD dependent epimerase/dehydratase family Thethe_00869 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Thethe_00869 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Thethe_00869 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thethe_00870 PF02397 Bacterial sugar transferase Thethe_00871 PF01050 Mannose-6-phosphate isomerase Thethe_00871 PF00483 Nucleotidyl transferase Thethe_00873 PF00271 Helicase conserved C-terminal domain Thethe_00873 PF00270 DEAD/DEAH box helicase Thethe_00898 PF00005 ABC transporter Thethe_00902 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_00902 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_00903 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_00904 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_00904 PF02378 Phosphotransferase system, EIIC Thethe_00905 PF01116 Fructose-bisphosphate aldolase class-II Thethe_00906 PF01116 Fructose-bisphosphate aldolase class-II Thethe_00909 PF13407 Periplasmic binding protein domain Thethe_00911 PF00005 ABC transporter Thethe_00912 PF02653 Branched-chain amino acid transport system / permease component Thethe_00923 PF17191 RecG wedge domain Thethe_00923 PF00270 DEAD/DEAH box helicase Thethe_00923 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Thethe_00925 PF17179 4Fe-4S dicluster domain Thethe_00926 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thethe_00926 PF00175 Oxidoreductase NAD-binding domain Thethe_00927 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thethe_00927 PF13187 4Fe-4S dicluster domain Thethe_00927 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thethe_00930 PF01964 Radical SAM ThiC family Thethe_00933 PF07729 FCD domain Thethe_00933 PF00392 Bacterial regulatory proteins, gntR family Thethe_00934 PF03786 D-mannonate dehydratase (UxuA) Thethe_00935 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00936 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00938 PF00331 Glycosyl hydrolase family 10 Thethe_00939 PF07477 Glycosyl hydrolase family 67 C-terminus Thethe_00939 PF07488 Glycosyl hydrolase family 67 middle domain Thethe_00939 PF03648 Glycosyl hydrolase family 67 N-terminus Thethe_00940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thethe_00940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thethe_00942 PF03512 Glycosyl hydrolase family 52 Thethe_00943 PF01229 Glycosyl hydrolases family 39 Thethe_00944 PF05448 Acetyl xylan esterase (AXE1) Thethe_00945 PF00196 Bacterial regulatory proteins, luxR family Thethe_00945 PF00072 Response regulator receiver domain Thethe_00946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_00946 PF07694 5TMR of 5TMR-LYT Thethe_00946 PF06580 Histidine kinase Thethe_00947 PF01547 Bacterial extracellular solute-binding protein Thethe_00948 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00949 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_00955 PF00857 Isochorismatase family Thethe_00959 PF00005 ABC transporter Thethe_00962 PF01361 Tautomerase enzyme Thethe_00967 PF04754 Putative transposase, YhgA-like Thethe_00968 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thethe_00968 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thethe_00968 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thethe_00968 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thethe_00970 PF02706 Chain length determinant protein Thethe_00970 PF13807 G-rich domain on putative tyrosine kinase Thethe_00971 PF13614 AAA domain Thethe_00973 PF00483 Nucleotidyl transferase Thethe_00975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_00977 PF00395 S-layer homology domain Thethe_00977 PF02903 Alpha amylase, N-terminal ig-like domain Thethe_00977 PF00128 Alpha amylase, catalytic domain Thethe_00980 PF00690 Cation transporter/ATPase, N-terminus Thethe_00980 PF00689 Cation transporting ATPase, C-terminus Thethe_00982 PF00334 Nucleoside diphosphate kinase Thethe_00984 PF10997 Alternate to MurJ Thethe_00986 PF00258 Flavodoxin Thethe_00986 PF00753 Metallo-beta-lactamase superfamily Thethe_00987 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thethe_00987 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_00987 PF18267 Rubredoxin NAD+ reductase C-terminal domain Thethe_00987 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thethe_00987 PF04324 BFD-like [2Fe-2S] binding domain Thethe_00988 PF01569 PAP2 superfamily Thethe_00990 PF01066 CDP-alcohol phosphatidyltransferase Thethe_00991 PF02540 NAD synthase Thethe_00992 PF00731 AIR carboxylase Thethe_00994 PF02632 BioY family Thethe_00995 PF00133 tRNA synthetases class I (I, L, M and V) Thethe_00995 PF10458 Valyl tRNA synthetase tRNA binding arm Thethe_00995 PF08264 Anticodon-binding domain of tRNA Thethe_00997 PF08245 Mur ligase middle domain Thethe_00997 PF02875 Mur ligase family, glutamate ligase domain Thethe_01003 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thethe_01004 PF08331 Domain of unknown function (DUF1730) Thethe_01006 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Thethe_01006 PF01522 Polysaccharide deacetylase Thethe_01008 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Thethe_01009 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Thethe_01009 PF00132 Bacterial transferase hexapeptide (six repeats) Thethe_01009 PF14602 Hexapeptide repeat of succinyl-transferase Thethe_01010 PF01113 Dihydrodipicolinate reductase, N-terminus Thethe_01010 PF05173 Dihydrodipicolinate reductase, C-terminus Thethe_01011 PF00701 Dihydrodipicolinate synthetase family Thethe_01012 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thethe_01012 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thethe_01015 PF00120 Glutamine synthetase, catalytic domain Thethe_01015 PF03951 Glutamine synthetase, beta-Grasp domain Thethe_01016 PF00990 Diguanylate cyclase, GGDEF domain Thethe_01016 PF00072 Response regulator receiver domain Thethe_01019 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_01021 PF00348 Polyprenyl synthetase Thethe_01022 PF01979 Amidohydrolase family Thethe_01023 PF00155 Aminotransferase class I and II Thethe_01026 PF00704 Glycosyl hydrolases family 18 Thethe_01028 PF01476 LysM domain Thethe_01028 PF01551 Peptidase family M23 Thethe_01028 PF08525 Opacity-associated protein A N-terminal motif Thethe_01031 PF03698 Uncharacterised protein family (UPF0180) Thethe_01034 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Thethe_01034 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Thethe_01035 PF04260 Protein of unknown function (DUF436) Thethe_01037 PF00704 Glycosyl hydrolases family 18 Thethe_01037 PF01476 LysM domain Thethe_01038 PF04024 PspC domain Thethe_01039 PF00324 Amino acid permease Thethe_01041 PF03734 L,D-transpeptidase catalytic domain Thethe_01041 PF01476 LysM domain Thethe_01042 PF04542 Sigma-70 region 2 Thethe_01042 PF08281 Sigma-70, region 4 Thethe_01044 PF01367 5'-3' exonuclease, C-terminal SAM fold Thethe_01044 PF00476 DNA polymerase family A Thethe_01044 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Thethe_01045 PF01121 Dephospho-CoA kinase Thethe_01046 PF01464 Transglycosylase SLT domain Thethe_01047 PF04284 Protein of unknown function (DUF441) Thethe_01051 PF00877 NlpC/P60 family Thethe_01053 PF01464 Transglycosylase SLT domain Thethe_01056 PF13581 Histidine kinase-like ATPase domain Thethe_01057 PF04060 Putative Fe-S cluster Thethe_01061 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Thethe_01061 PF17203 Single cache domain 3 Thethe_01061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01063 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thethe_01063 PF00037 4Fe-4S binding domain Thethe_01063 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thethe_01064 PF00037 4Fe-4S binding domain Thethe_01064 PF02256 Iron hydrogenase small subunit Thethe_01064 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thethe_01064 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thethe_01066 PF02545 Maf-like protein Thethe_01067 PF04002 RadC-like JAB domain Thethe_01071 PF00905 Penicillin binding protein transpeptidase domain Thethe_01071 PF03717 Penicillin-binding Protein dimerisation domain Thethe_01072 PF03775 Septum formation inhibitor MinC, C-terminal domain Thethe_01073 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thethe_01074 PF03776 Septum formation topological specificity factor MinE Thethe_01075 PF01098 Cell cycle protein Thethe_01076 PF02142 MGS-like domain Thethe_01077 PF01551 Peptidase family M23 Thethe_01077 PF01476 LysM domain Thethe_01078 PF00571 CBS domain Thethe_01078 PF02163 Peptidase family M50 Thethe_01081 PF10150 Ribonuclease E/G family Thethe_01081 PF00575 S1 RNA binding domain Thethe_01082 PF00829 Ribosomal prokaryotic L21 protein Thethe_01084 PF01016 Ribosomal L27 protein Thethe_01086 PF01926 50S ribosome-binding GTPase Thethe_01086 PF09269 Domain of unknown function (DUF1967) Thethe_01086 PF01018 GTP1/OBG Thethe_01087 PF01467 Cytidylyltransferase-like Thethe_01088 PF01966 HD domain Thethe_01091 PF13309 HTH domain Thethe_01091 PF08348 YheO-like PAS domain Thethe_01092 PF04015 Domain of unknown function (DUF362) Thethe_01093 PF07943 Penicillin-binding protein 5, C-terminal domain Thethe_01093 PF00768 D-alanyl-D-alanine carboxypeptidase Thethe_01094 PF10531 SLBB domain Thethe_01096 PF01625 Peptide methionine sulfoxide reductase Thethe_01097 PF04608 Phosphatidylglycerophosphatase A Thethe_01098 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thethe_01101 PF00465 Iron-containing alcohol dehydrogenase Thethe_01102 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thethe_01102 PF00175 Oxidoreductase NAD-binding domain Thethe_01103 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thethe_01103 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_01110 PF12838 4Fe-4S dicluster domain Thethe_01112 PF01063 Amino-transferase class IV Thethe_01113 PF02272 DHHA1 domain Thethe_01113 PF01411 tRNA synthetases class II (A) Thethe_01113 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_01116 PF00690 Cation transporter/ATPase, N-terminus Thethe_01116 PF00689 Cation transporting ATPase, C-terminus Thethe_01118 PF00005 ABC transporter Thethe_01119 PF01047 MarR family Thethe_01122 PF12706 Beta-lactamase superfamily domain Thethe_01123 PF03772 Competence protein Thethe_01123 PF00753 Metallo-beta-lactamase superfamily Thethe_01123 PF13567 Domain of unknown function (DUF4131) Thethe_01125 PF01649 Ribosomal protein S20 Thethe_01127 PF03418 Germination protease Thethe_01129 PF01520 N-acetylmuramoyl-L-alanine amidase Thethe_01129 PF08239 Bacterial SH3 domain Thethe_01131 PF13477 Glycosyl transferase 4-like Thethe_01131 PF00534 Glycosyl transferases group 1 Thethe_01133 PF06421 GTP-binding protein LepA C-terminus Thethe_01133 PF03144 Elongation factor Tu domain 2 Thethe_01133 PF00009 Elongation factor Tu GTP binding domain Thethe_01133 PF00679 Elongation factor G C-terminus Thethe_01133 PF14492 Elongation Factor G, domain II Thethe_01134 PF06969 HemN C-terminal domain Thethe_01134 PF04055 Radical SAM superfamily Thethe_01135 PF01628 HrcA protein C terminal domain Thethe_01136 PF01025 GrpE Thethe_01137 PF00012 Hsp70 protein Thethe_01138 PF00684 DnaJ central domain Thethe_01138 PF01556 DnaJ C terminal domain Thethe_01138 PF00226 DnaJ domain Thethe_01140 PF04452 RNA methyltransferase Thethe_01141 PF00919 Uncharacterized protein family UPF0004 Thethe_01141 PF01938 TRAM domain Thethe_01141 PF04055 Radical SAM superfamily Thethe_01142 PF01230 HIT domain Thethe_01143 PF01165 Ribosomal protein S21 Thethe_01144 PF09424 Yqey-like protein Thethe_01145 PF07873 YabP family Thethe_01147 PF02562 PhoH-like protein Thethe_01148 PF07698 7TM receptor with intracellular HD hydrolase Thethe_01148 PF07697 7TM-HD extracellular Thethe_01148 PF01966 HD domain Thethe_01149 PF02130 Uncharacterized protein family UPF0054 Thethe_01150 PF01219 Prokaryotic diacylglycerol kinase Thethe_01151 PF07650 KH domain Thethe_01151 PF01926 50S ribosome-binding GTPase Thethe_01152 PF01791 DeoC/LacD family aldolase Thethe_01153 PF02565 Recombination protein O C terminal Thethe_01153 PF11967 Recombination protein O N terminal Thethe_01155 PF03129 Anticodon binding domain Thethe_01155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thethe_01156 PF03618 Kinase/pyrophosphorylase Thethe_01157 PF00391 PEP-utilising enzyme, mobile domain Thethe_01157 PF02896 PEP-utilising enzyme, TIM barrel domain Thethe_01157 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thethe_01161 PF08206 Ribonuclease B OB domain Thethe_01161 PF00773 RNB domain Thethe_01161 PF00575 S1 RNA binding domain Thethe_01161 PF17876 Cold shock domain Thethe_01163 PF01668 SmpB protein Thethe_01165 PF00120 Glutamine synthetase, catalytic domain Thethe_01165 PF18318 Glutamine synthetase C-terminal domain Thethe_01165 PF12437 Glutamine synthetase type III N terminal Thethe_01166 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thethe_01168 PF01168 Alanine racemase, N-terminal domain Thethe_01169 PF04472 Cell division protein SepF Thethe_01171 PF17774 Putative RNA-binding domain in YlmH Thethe_01171 PF01479 S4 domain Thethe_01172 PF05103 DivIVA protein Thethe_01174 PF00133 tRNA synthetases class I (I, L, M and V) Thethe_01174 PF08264 Anticodon-binding domain of tRNA Thethe_01174 PF06827 Zinc finger found in FPG and IleRS Thethe_01175 PF01048 Phosphorylase superfamily Thethe_01176 PF01910 Thiamine-binding protein Thethe_01178 PF00591 Glycosyl transferase family, a/b domain Thethe_01178 PF02885 Glycosyl transferase family, helical bundle domain Thethe_01178 PF00117 Glutamine amidotransferase class-I Thethe_01179 PF00591 Glycosyl transferase family, a/b domain Thethe_01179 PF02885 Glycosyl transferase family, helical bundle domain Thethe_01180 PF00218 Indole-3-glycerol phosphate synthase Thethe_01181 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thethe_01182 PF00291 Pyridoxal-phosphate dependent enzyme Thethe_01183 PF00290 Tryptophan synthase alpha chain Thethe_01184 PF00578 AhpC/TSA family Thethe_01190 PF03707 Bacterial signalling protein N terminal repeat Thethe_01190 PF00990 Diguanylate cyclase, GGDEF domain Thethe_01190 PF00563 EAL domain Thethe_01193 PF00589 Phage integrase family Thethe_01200 PF00456 Transketolase, thiamine diphosphate binding domain Thethe_01200 PF02779 Transketolase, pyrimidine binding domain Thethe_01200 PF02780 Transketolase, C-terminal domain Thethe_01202 PF01252 Signal peptidase (SPase) II Thethe_01203 PF00849 RNA pseudouridylate synthase Thethe_01203 PF01479 S4 domain Thethe_01205 PF03129 Anticodon binding domain Thethe_01205 PF13393 Histidyl-tRNA synthetase Thethe_01206 PF00152 tRNA synthetases class II (D, K and N) Thethe_01206 PF01336 OB-fold nucleic acid binding domain Thethe_01206 PF02938 GAD domain Thethe_01207 PF00899 ThiF family Thethe_01208 PF02583 Metal-sensitive transcriptional repressor Thethe_01209 PF00085 Thioredoxin Thethe_01210 PF01255 Putative undecaprenyl diphosphate synthase Thethe_01211 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thethe_01211 PF12002 MgsA AAA+ ATPase C terminal Thethe_01211 PF16193 AAA C-terminal domain Thethe_01212 PF02082 Transcriptional regulator Thethe_01213 PF00266 Aminotransferase class-V Thethe_01218 PF00005 ABC transporter Thethe_01218 PF00664 ABC transporter transmembrane region Thethe_01227 PF01594 AI-2E family transporter Thethe_01228 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_01228 PF01411 tRNA synthetases class II (A) Thethe_01228 PF02272 DHHA1 domain Thethe_01229 PF06135 IreB regulatory phosphoprotein Thethe_01230 PF03652 Holliday junction resolvase Thethe_01231 PF06949 Protein of unknown function (DUF1292) Thethe_01232 PF01475 Ferric uptake regulator family Thethe_01233 PF00753 Metallo-beta-lactamase superfamily Thethe_01233 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thethe_01233 PF17770 Ribonuclease J C-terminal domain Thethe_01234 PF06133 Control of competence regulator ComK, YlbF/YmcA Thethe_01235 PF02618 YceG-like family Thethe_01238 PF00905 Penicillin binding protein transpeptidase domain Thethe_01238 PF03793 PASTA domain Thethe_01238 PF03717 Penicillin-binding Protein dimerisation domain Thethe_01239 PF04545 Sigma-70, region 4 Thethe_01239 PF04542 Sigma-70 region 2 Thethe_01241 PF08501 Shikimate dehydrogenase substrate binding domain Thethe_01241 PF01488 Shikimate / quinate 5-dehydrogenase Thethe_01242 PF00437 Type II/IV secretion system protein Thethe_01243 PF00437 Type II/IV secretion system protein Thethe_01244 PF00482 Type II secretion system (T2SS), protein F Thethe_01246 PF06750 Bacterial Peptidase A24 N-terminal domain Thethe_01246 PF01478 Type IV leader peptidase family Thethe_01255 PF01202 Shikimate kinase Thethe_01256 PF00696 Amino acid kinase family Thethe_01256 PF01472 PUA domain Thethe_01257 PF00171 Aldehyde dehydrogenase family Thethe_01258 PF01220 Dehydroquinase class II Thethe_01259 PF01321 Creatinase/Prolidase N-terminal domain Thethe_01259 PF00557 Metallopeptidase family M24 Thethe_01260 PF01132 Elongation factor P (EF-P) OB domain Thethe_01260 PF09285 Elongation factor P, C-terminal Thethe_01260 PF08207 Elongation factor P (EF-P) KOW-like domain Thethe_01265 PF06686 Stage III sporulation protein AC/AD protein family Thethe_01266 PF09546 Stage III sporulation protein AE (spore_III_AE) Thethe_01267 PF09581 Stage III sporulation protein AF (Spore_III_AF) Thethe_01270 PF03780 Asp23 family, cell envelope-related function Thethe_01273 PF01029 NusB family Thethe_01274 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thethe_01274 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thethe_01275 PF02601 Exonuclease VII, large subunit Thethe_01275 PF13742 OB-fold nucleic acid binding domain Thethe_01276 PF02609 Exonuclease VII small subunit Thethe_01277 PF00348 Polyprenyl synthetase Thethe_01279 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thethe_01279 PF02779 Transketolase, pyrimidine binding domain Thethe_01279 PF02780 Transketolase, C-terminal domain Thethe_01280 PF01479 S4 domain Thethe_01280 PF01728 FtsJ-like methyltransferase Thethe_01281 PF01513 ATP-NAD kinase Thethe_01282 PF02863 Arginine repressor, C-terminal domain Thethe_01282 PF01316 Arginine repressor, DNA binding domain Thethe_01283 PF02463 RecF/RecN/SMC N terminal domain Thethe_01284 PF17820 PDZ domain Thethe_01284 PF05580 SpoIVB peptidase S55 Thethe_01285 PF08769 Sporulation initiation factor Spo0A C terminal Thethe_01285 PF00072 Response regulator receiver domain Thethe_01288 PF00535 Glycosyl transferase family 2 Thethe_01292 PF00293 NUDIX domain Thethe_01294 PF01944 Stage II sporulation protein M Thethe_01295 PF02899 Phage integrase, N-terminal SAM-like domain Thethe_01295 PF00589 Phage integrase family Thethe_01296 PF00768 D-alanyl-D-alanine carboxypeptidase Thethe_01296 PF07943 Penicillin-binding protein 5, C-terminal domain Thethe_01297 PF01740 STAS domain Thethe_01298 PF13581 Histidine kinase-like ATPase domain Thethe_01299 PF04545 Sigma-70, region 4 Thethe_01299 PF04539 Sigma-70 region 3 Thethe_01299 PF04542 Sigma-70 region 2 Thethe_01301 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thethe_01303 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thethe_01304 PF01743 Poly A polymerase head domain Thethe_01304 PF13735 tRNA nucleotidyltransferase domain 2 putative Thethe_01304 PF12627 Probable RNA and SrmB- binding site of polymerase A Thethe_01305 PF02163 Peptidase family M50 Thethe_01306 PF02616 Segregation and condensation protein ScpA Thethe_01307 PF04079 Segregation and condensation complex subunit ScpB Thethe_01309 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Thethe_01310 PF00768 D-alanyl-D-alanine carboxypeptidase Thethe_01310 PF07943 Penicillin-binding protein 5, C-terminal domain Thethe_01312 PF13932 GidA associated domain Thethe_01312 PF01134 Glucose inhibited division protein A Thethe_01313 PF00849 RNA pseudouridylate synthase Thethe_01313 PF01479 S4 domain Thethe_01315 PF17284 Spermidine synthase tetramerisation domain Thethe_01316 PF00491 Arginase family Thethe_01317 PF02436 Conserved carboxylase domain Thethe_01317 PF00682 HMGL-like Thethe_01317 PF00364 Biotin-requiring enzyme Thethe_01318 PF01476 LysM domain Thethe_01320 PF01975 Survival protein SurE Thethe_01321 PF01418 Helix-turn-helix domain, rpiR family Thethe_01321 PF01380 SIS domain Thethe_01322 PF00300 Histidine phosphatase superfamily (branch 1) Thethe_01325 PF02224 Cytidylate kinase Thethe_01327 PF02401 LytB protein Thethe_01328 PF00575 S1 RNA binding domain Thethe_01329 PF02675 S-adenosylmethionine decarboxylase Thethe_01330 PF01739 CheR methyltransferase, SAM binding domain Thethe_01330 PF03705 CheR methyltransferase, all-alpha domain Thethe_01331 PF04055 Radical SAM superfamily Thethe_01331 PF01938 TRAM domain Thethe_01331 PF00919 Uncharacterized protein family UPF0004 Thethe_01333 PF01624 MutS domain I Thethe_01333 PF05188 MutS domain II Thethe_01333 PF05192 MutS domain III Thethe_01333 PF05190 MutS family domain IV Thethe_01333 PF00488 MutS domain V Thethe_01334 PF01119 DNA mismatch repair protein, C-terminal domain Thethe_01334 PF08676 MutL C terminal dimerisation domain Thethe_01336 PF17209 Hfq protein Thethe_01337 PF03807 NADP oxidoreductase coenzyme F420-dependent Thethe_01337 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thethe_01338 PF00075 RNase H Thethe_01339 PF02899 Phage integrase, N-terminal SAM-like domain Thethe_01339 PF00589 Phage integrase family Thethe_01340 PF01726 LexA DNA binding domain Thethe_01340 PF00717 Peptidase S24-like Thethe_01341 PF06838 Methionine gamma-lyase Thethe_01342 PF17866 AAA lid domain Thethe_01342 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_01343 PF00152 tRNA synthetases class II (D, K and N) Thethe_01343 PF01336 OB-fold nucleic acid binding domain Thethe_01344 PF10397 Adenylosuccinate lyase C-terminus Thethe_01344 PF00206 Lyase Thethe_01345 PF00155 Aminotransferase class I and II Thethe_01346 PF02811 PHP domain Thethe_01347 PF04232 Stage V sporulation protein S (SpoVS) Thethe_01348 PF13277 YmdB-like protein Thethe_01349 PF01966 HD domain Thethe_01349 PF12072 Domain of unknown function (DUF3552) Thethe_01349 PF00013 KH domain Thethe_01350 PF13476 AAA domain Thethe_01351 PF12320 Type 5 capsule protein repressor C-terminal domain Thethe_01351 PF00149 Calcineurin-like phosphoesterase Thethe_01355 PF02631 RecX family Thethe_01356 PF00154 recA bacterial DNA recombination protein Thethe_01357 PF02464 Competence-damaged protein Thethe_01357 PF00994 Probable molybdopterin binding domain Thethe_01357 PF18146 Damage-inducible protein CinA KH domain Thethe_01358 PF01066 CDP-alcohol phosphatidyltransferase Thethe_01359 PF00919 Uncharacterized protein family UPF0004 Thethe_01359 PF18693 TRAM domain Thethe_01359 PF04055 Radical SAM superfamily Thethe_01360 PF01580 FtsK/SpoIIIE family Thethe_01360 PF09397 Ftsk gamma domain Thethe_01360 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thethe_01360 PF17854 FtsK alpha domain Thethe_01362 PF00574 Clp protease Thethe_01363 PF00696 Amino acid kinase family Thethe_01363 PF13840 ACT domain Thethe_01365 PF00692 dUTPase Thethe_01366 PF05193 Peptidase M16 inactive domain Thethe_01366 PF00675 Insulinase (Peptidase family M16) Thethe_01367 PF01522 Polysaccharide deacetylase Thethe_01368 PF00013 KH domain Thethe_01368 PF03725 3' exoribonuclease family, domain 2 Thethe_01368 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thethe_01368 PF01138 3' exoribonuclease family, domain 1 Thethe_01368 PF00575 S1 RNA binding domain Thethe_01369 PF00312 Ribosomal protein S15 Thethe_01370 PF06574 FAD synthetase Thethe_01370 PF01687 Riboflavin kinase Thethe_01371 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thethe_01371 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thethe_01371 PF09157 Pseudouridine synthase II TruB, C-terminal Thethe_01372 PF01368 DHH family Thethe_01372 PF02272 DHHA1 domain Thethe_01373 PF02033 Ribosome-binding factor A Thethe_01374 PF00009 Elongation factor Tu GTP binding domain Thethe_01374 PF04760 Translation initiation factor IF-2, N-terminal region Thethe_01374 PF11987 Translation-initiation factor 2 Thethe_01376 PF04296 Protein of unknown function (DUF448) Thethe_01377 PF13184 NusA-like KH domain Thethe_01377 PF00575 S1 RNA binding domain Thethe_01377 PF08529 NusA N-terminal domain Thethe_01378 PF02576 RimP N-terminal domain Thethe_01378 PF17384 RimP C-terminal SH3 domain Thethe_01379 PF00929 Exonuclease Thethe_01379 PF11490 DNA polymerase III polC-type N-terminus II Thethe_01379 PF02811 PHP domain Thethe_01379 PF14579 Helix-hairpin-helix motif Thethe_01379 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thethe_01379 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thethe_01380 PF00535 Glycosyl transferase family 2 Thethe_01381 PF04551 GcpE protein Thethe_01382 PF02163 Peptidase family M50 Thethe_01382 PF17820 PDZ domain Thethe_01383 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thethe_01383 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thethe_01383 PF13288 DXP reductoisomerase C-terminal domain Thethe_01385 PF01255 Putative undecaprenyl diphosphate synthase Thethe_01387 PF01765 Ribosome recycling factor Thethe_01388 PF00696 Amino acid kinase family Thethe_01389 PF00889 Elongation factor TS Thethe_01390 PF00318 Ribosomal protein S2 Thethe_01393 PF04545 Sigma-70, region 4 Thethe_01393 PF04539 Sigma-70 region 3 Thethe_01393 PF04542 Sigma-70 region 2 Thethe_01394 PF03975 CheD chemotactic sensory transduction Thethe_01395 PF04509 CheC-like family Thethe_01396 PF01584 CheW-like domain Thethe_01397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01397 PF01627 Hpt domain Thethe_01397 PF02895 Signal transducing histidine kinase, homodimeric domain Thethe_01397 PF01584 CheW-like domain Thethe_01397 PF07194 P2 response regulator binding domain Thethe_01399 PF10609 NUBPL iron-transfer P-loop NTPase Thethe_01400 PF00448 SRP54-type protein, GTPase domain Thethe_01401 PF00771 FHIPEP family Thethe_01402 PF01312 FlhB HrpN YscU SpaS Family Thethe_01403 PF01311 Bacterial export proteins, family 1 Thethe_01404 PF01313 Bacterial export proteins, family 3 Thethe_01405 PF00813 FliP family Thethe_01407 PF00072 Response regulator receiver domain Thethe_01408 PF04509 CheC-like family Thethe_01408 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thethe_01409 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thethe_01409 PF02154 Flagellar motor switch protein FliM Thethe_01410 PF03748 Flagellar basal body-associated protein FliL Thethe_01411 PF06289 Flagellar and Swarming motility proteins Thethe_01412 PF07559 Flagellar basal body protein FlaE Thethe_01412 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thethe_01412 PF00460 Flagella basal body rod protein Thethe_01413 PF03963 Flagellar hook capping protein - N-terminal region Thethe_01417 PF18269 T3SS EscN ATPase C-terminal domain Thethe_01417 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thethe_01417 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thethe_01419 PF14842 FliG N-terminal domain Thethe_01419 PF14841 FliG middle domain Thethe_01419 PF01706 FliG C-terminal domain Thethe_01420 PF08345 Flagellar M-ring protein C-terminal Thethe_01420 PF01514 Secretory protein of YscJ/FliF family Thethe_01421 PF02049 Flagellar hook-basal body complex protein FliE Thethe_01422 PF00460 Flagella basal body rod protein Thethe_01422 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thethe_01423 PF00460 Flagella basal body rod protein Thethe_01424 PF08222 CodY helix-turn-helix domain Thethe_01424 PF06018 CodY GAF-like domain Thethe_01425 PF00004 ATPase family associated with various cellular activities (AAA) Thethe_01425 PF07724 AAA domain (Cdc48 subfamily) Thethe_01425 PF10431 C-terminal, D2-small domain, of ClpB protein Thethe_01426 PF00227 Proteasome subunit Thethe_01427 PF01396 Topoisomerase DNA binding C4 zinc finger Thethe_01427 PF01751 Toprim domain Thethe_01427 PF01131 DNA topoisomerase Thethe_01428 PF17782 DprA winged helix domain Thethe_01428 PF02481 DNA recombination-mediator protein A Thethe_01429 PF01351 Ribonuclease HII Thethe_01430 PF02021 Uncharacterised protein family UPF0102 Thethe_01431 PF00579 tRNA synthetases class I (W and Y) Thethe_01432 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thethe_01432 PF01078 Magnesium chelatase, subunit ChlI Thethe_01433 PF01926 50S ribosome-binding GTPase Thethe_01434 PF01245 Ribosomal protein L19 Thethe_01435 PF01746 tRNA (Guanine-1)-methyltransferase Thethe_01436 PF05239 PRC-barrel domain Thethe_01436 PF01782 RimM N-terminal domain Thethe_01438 PF00886 Ribosomal protein S16 Thethe_01439 PF00448 SRP54-type protein, GTPase domain Thethe_01439 PF02978 Signal peptide binding domain Thethe_01439 PF02881 SRP54-type protein, helical bundle domain Thethe_01440 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Thethe_01445 PF00072 Response regulator receiver domain Thethe_01445 PF00196 Bacterial regulatory proteins, luxR family Thethe_01447 PF00005 ABC transporter Thethe_01451 PF04542 Sigma-70 region 2 Thethe_01451 PF08281 Sigma-70, region 4 Thethe_01452 PF02881 SRP54-type protein, helical bundle domain Thethe_01452 PF00448 SRP54-type protein, GTPase domain Thethe_01453 PF02463 RecF/RecN/SMC N terminal domain Thethe_01453 PF06470 SMC proteins Flexible Hinge Domain Thethe_01454 PF04232 Stage V sporulation protein S (SpoVS) Thethe_01456 PF14622 Ribonuclease-III-like Thethe_01456 PF00035 Double-stranded RNA binding motif Thethe_01457 PF02801 Beta-ketoacyl synthase, C-terminal domain Thethe_01457 PF00109 Beta-ketoacyl synthase, N-terminal domain Thethe_01458 PF00550 Phosphopantetheine attachment site Thethe_01460 PF00698 Acyl transferase domain Thethe_01461 PF03060 Nitronate monooxygenase Thethe_01462 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thethe_01462 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thethe_01463 PF02504 Fatty acid synthesis protein Thethe_01465 PF01783 Ribosomal L32p protein family Thethe_01466 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thethe_01467 PF00871 Acetokinase family Thethe_01468 PF01515 Phosphate acetyl/butaryl transferase Thethe_01469 PF05636 HIGH Nucleotidyl Transferase Thethe_01470 PF07670 Nucleoside recognition Thethe_01472 PF01467 Cytidylyltransferase-like Thethe_01474 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thethe_01475 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thethe_01476 PF02645 Uncharacterised protein, DegV family COG1307 Thethe_01477 PF17191 RecG wedge domain Thethe_01477 PF00271 Helicase conserved C-terminal domain Thethe_01477 PF00270 DEAD/DEAH box helicase Thethe_01478 PF13684 Dihydroxyacetone kinase family Thethe_01478 PF02734 DAK2 domain Thethe_01479 PF03780 Asp23 family, cell envelope-related function Thethe_01480 PF00830 Ribosomal L28 family Thethe_01484 PF00834 Ribulose-phosphate 3 epimerase family Thethe_01485 PF03193 RsgA GTPase Thethe_01485 PF16745 RsgA N-terminal domain Thethe_01486 PF00069 Protein kinase domain Thethe_01486 PF03793 PASTA domain Thethe_01488 PF04055 Radical SAM superfamily Thethe_01489 PF01029 NusB family Thethe_01489 PF01189 16S rRNA methyltransferase RsmB/F Thethe_01490 PF04298 Putative neutral zinc metallopeptidase Thethe_01492 PF00551 Formyl transferase Thethe_01492 PF02911 Formyl transferase, C-terminal domain Thethe_01493 PF01327 Polypeptide deformylase Thethe_01494 PF00271 Helicase conserved C-terminal domain Thethe_01494 PF04851 Type III restriction enzyme, res subunit Thethe_01494 PF17764 3′ DNA-binding domain (3′BD) Thethe_01494 PF18074 Primosomal protein N C-terminal domain Thethe_01494 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thethe_01495 PF02441 Flavoprotein Thethe_01495 PF04127 DNA / pantothenate metabolism flavoprotein Thethe_01496 PF01192 RNA polymerase Rpb6 Thethe_01497 PF00625 Guanylate kinase Thethe_01498 PF04025 Domain of unknown function (DUF370) Thethe_01499 PF03755 YicC-like family, N-terminal region Thethe_01499 PF08340 Domain of unknown function (DUF1732) Thethe_01500 PF01678 Diaminopimelate epimerase Thethe_01507 PF10672 S-adenosylmethionine-dependent methyltransferase Thethe_01507 PF17785 PUA-like domain Thethe_01508 PF00156 Phosphoribosyl transferase domain Thethe_01509 PF01180 Dihydroorotate dehydrogenase Thethe_01510 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thethe_01511 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Thethe_01512 PF01979 Amidohydrolase family Thethe_01513 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thethe_01513 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thethe_01514 PF00156 Phosphoribosyl transferase domain Thethe_01516 PF00586 AIR synthase related protein, N-terminal domain Thethe_01516 PF02769 AIR synthase related protein, C-terminal domain Thethe_01516 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thethe_01517 PF00753 Metallo-beta-lactamase superfamily Thethe_01518 PF02580 D-Tyr-tRNA(Tyr) deacylase Thethe_01519 PF04607 Region found in RelA / SpoT proteins Thethe_01519 PF02824 TGS domain Thethe_01519 PF13291 ACT domain Thethe_01520 PF00156 Phosphoribosyl transferase domain Thethe_01521 PF01368 DHH family Thethe_01521 PF02272 DHHA1 domain Thethe_01521 PF17768 RecJ OB domain Thethe_01521 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Thethe_01522 PF03109 ABC1 family Thethe_01524 PF02355 Protein export membrane protein Thethe_01525 PF02355 Protein export membrane protein Thethe_01525 PF07549 SecD/SecF GG Motif Thethe_01531 PF01702 Queuine tRNA-ribosyltransferase Thethe_01532 PF02547 Queuosine biosynthesis protein Thethe_01533 PF04122 Putative cell wall binding repeat 2 Thethe_01533 PF08486 Stage II sporulation protein Thethe_01534 PF11146 Protein of unknown function (DUF2905) Thethe_01535 PF17864 RuvB AAA lid domain Thethe_01535 PF05491 RuvB C-terminal winged helix domain Thethe_01535 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thethe_01536 PF01330 RuvA N terminal domain Thethe_01536 PF07499 RuvA, C-terminal domain Thethe_01537 PF02075 Crossover junction endodeoxyribonuclease RuvC Thethe_01539 PF01584 CheW-like domain Thethe_01540 PF01709 Transcriptional regulator Thethe_01541 PF01925 Sulfite exporter TauE/SafE Thethe_01546 PF01205 Uncharacterized protein family UPF0029 Thethe_01546 PF09186 Domain of unknown function (DUF1949) Thethe_01547 PF00293 NUDIX domain Thethe_01549 PF16360 GTP-binding GTPase Middle Region Thethe_01549 PF01926 50S ribosome-binding GTPase Thethe_01549 PF13167 GTP-binding GTPase N-terminal Thethe_01551 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_01556 PF01507 Phosphoadenosine phosphosulfate reductase family Thethe_01557 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01558 PF00005 ABC transporter Thethe_01560 PF00009 Elongation factor Tu GTP binding domain Thethe_01561 PF01507 Phosphoadenosine phosphosulfate reductase family Thethe_01562 PF01053 Cys/Met metabolism PLP-dependent enzyme Thethe_01563 PF01206 Sulfurtransferase TusA Thethe_01565 PF00899 ThiF family Thethe_01566 PF05690 Thiazole biosynthesis protein ThiG Thethe_01566 PF02597 ThiS family Thethe_01567 PF13187 4Fe-4S dicluster domain Thethe_01567 PF12800 4Fe-4S binding domain Thethe_01567 PF00037 4Fe-4S binding domain Thethe_01568 PF00005 ABC transporter Thethe_01571 PF01053 Cys/Met metabolism PLP-dependent enzyme Thethe_01572 PF03180 NLPA lipoprotein Thethe_01573 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01574 PF09383 NIL domain Thethe_01574 PF00005 ABC transporter Thethe_01575 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01575 PF08369 Proto-chlorophyllide reductase 57 kD subunit Thethe_01576 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01578 PF04055 Radical SAM superfamily Thethe_01578 PF02579 Dinitrogenase iron-molybdenum cofactor Thethe_01579 PF04055 Radical SAM superfamily Thethe_01579 PF02579 Dinitrogenase iron-molybdenum cofactor Thethe_01582 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01583 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01584 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thethe_01586 PF01053 Cys/Met metabolism PLP-dependent enzyme Thethe_01587 PF01053 Cys/Met metabolism PLP-dependent enzyme Thethe_01588 PF00291 Pyridoxal-phosphate dependent enzyme Thethe_01589 PF01053 Cys/Met metabolism PLP-dependent enzyme Thethe_01590 PF13847 Methyltransferase domain Thethe_01591 PF00490 Delta-aminolevulinic acid dehydratase Thethe_01592 PF10414 Sirohaem synthase dimerisation region Thethe_01592 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thethe_01592 PF14824 Sirohaem biosynthesis protein central Thethe_01593 PF00202 Aminotransferase class-III Thethe_01595 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Thethe_01595 PF03900 Porphobilinogen deaminase, C-terminal domain Thethe_01596 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Thethe_01596 PF01488 Shikimate / quinate 5-dehydrogenase Thethe_01596 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Thethe_01597 PF00005 ABC transporter Thethe_01598 PF00005 ABC transporter Thethe_01598 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thethe_01600 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01601 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thethe_01604 PF00664 ABC transporter transmembrane region Thethe_01604 PF00005 ABC transporter Thethe_01610 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Thethe_01610 PF01871 AMMECR1 Thethe_01611 PF13411 MerR HTH family regulatory protein Thethe_01612 PF07690 Major Facilitator Superfamily Thethe_01613 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thethe_01613 PF02769 AIR synthase related protein, C-terminal domain Thethe_01613 PF00586 AIR synthase related protein, N-terminal domain Thethe_01614 PF01276 Orn/Lys/Arg decarboxylase, major domain Thethe_01614 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thethe_01616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01616 PF00512 His Kinase A (phospho-acceptor) domain Thethe_01616 PF00672 HAMP domain Thethe_01617 PF00072 Response regulator receiver domain Thethe_01617 PF00486 Transcriptional regulatory protein, C terminal Thethe_01618 PF00085 Thioredoxin Thethe_01619 PF00578 AhpC/TSA family Thethe_01620 PF02683 Cytochrome C biogenesis protein transmembrane region Thethe_01621 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Thethe_01622 PF00480 ROK family Thethe_01625 PF01169 Uncharacterized protein family UPF0016 Thethe_01626 PF07486 Cell Wall Hydrolase Thethe_01626 PF01471 Putative peptidoglycan binding domain Thethe_01628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01628 PF00512 His Kinase A (phospho-acceptor) domain Thethe_01628 PF18719 ArlS sensor domain Thethe_01629 PF00486 Transcriptional regulatory protein, C terminal Thethe_01629 PF00072 Response regulator receiver domain Thethe_01630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thethe_01631 PF01842 ACT domain Thethe_01631 PF02153 Prephenate dehydrogenase Thethe_01632 PF00793 DAHP synthetase I family Thethe_01632 PF18152 DAHP synthase ferredoxin-like domain Thethe_01633 PF01842 ACT domain Thethe_01633 PF00800 Prephenate dehydratase Thethe_01633 PF01817 Chorismate mutase type II Thethe_01634 PF13193 AMP-binding enzyme C-terminal domain Thethe_01634 PF00501 AMP-binding enzyme Thethe_01635 PF01761 3-dehydroquinate synthase Thethe_01636 PF03313 Serine dehydratase alpha chain Thethe_01637 PF03315 Serine dehydratase beta chain Thethe_01638 PF01432 Peptidase family M3 Thethe_01638 PF08439 Oligopeptidase F Thethe_01640 PF04199 Putative cyclase Thethe_01641 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thethe_01641 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thethe_01643 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01644 PF00005 ABC transporter Thethe_01646 PF02441 Flavoprotein Thethe_01647 PF01040 UbiA prenyltransferase family Thethe_01648 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thethe_01649 PF00258 Flavodoxin Thethe_01649 PF00753 Metallo-beta-lactamase superfamily Thethe_01651 PF14098 Small, acid-soluble spore protein I Thethe_01653 PF02673 Bacitracin resistance protein BacA Thethe_01654 PF01661 Macro domain Thethe_01656 PF03009 Glycerophosphoryl diester phosphodiesterase family Thethe_01657 PF02310 B12 binding domain Thethe_01657 PF04055 Radical SAM superfamily Thethe_01659 PF06207 Protein of unknown function (DUF1002) Thethe_01660 PF00704 Glycosyl hydrolases family 18 Thethe_01661 PF06971 Putative DNA-binding protein N-terminus Thethe_01661 PF02629 CoA binding domain Thethe_01662 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Thethe_01662 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Thethe_01663 PF02803 Thiolase, C-terminal domain Thethe_01663 PF00108 Thiolase, N-terminal domain Thethe_01664 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thethe_01664 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Thethe_01665 PF01012 Electron transfer flavoprotein domain Thethe_01665 PF00766 Electron transfer flavoprotein FAD-binding domain Thethe_01666 PF01012 Electron transfer flavoprotein domain Thethe_01667 PF02770 Acyl-CoA dehydrogenase, middle domain Thethe_01667 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Thethe_01667 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Thethe_01668 PF00378 Enoyl-CoA hydratase/isomerase Thethe_01669 PF09861 Lactate racemase N-terminal domain Thethe_01670 PF01565 FAD binding domain Thethe_01670 PF02913 FAD linked oxidases, C-terminal domain Thethe_01671 PF01012 Electron transfer flavoprotein domain Thethe_01671 PF00766 Electron transfer flavoprotein FAD-binding domain Thethe_01672 PF01012 Electron transfer flavoprotein domain Thethe_01673 PF02652 L-lactate permease Thethe_01674 PF00392 Bacterial regulatory proteins, gntR family Thethe_01674 PF07729 FCD domain Thethe_01675 PF00717 Peptidase S24-like Thethe_01675 PF01726 LexA DNA binding domain Thethe_01682 PF03841 L-seryl-tRNA selenium transferase Thethe_01688 PF01979 Amidohydrolase family Thethe_01689 PF05043 Mga helix-turn-helix domain Thethe_01689 PF08279 HTH domain Thethe_01689 PF00874 PRD domain Thethe_01689 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_01689 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_01691 PF01676 Metalloenzyme superfamily Thethe_01692 PF01168 Alanine racemase, N-terminal domain Thethe_01693 PF00155 Aminotransferase class I and II Thethe_01694 PF02126 Phosphotriesterase family Thethe_01696 PF10797 Protein of unknown function Thethe_01697 PF10941 Protein of unknown function DUF2620 Thethe_01699 PF14503 YhfZ C-terminal domain Thethe_01699 PF14502 Helix-turn-helix domain Thethe_01702 PF00155 Aminotransferase class I and II Thethe_01703 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_01703 PF02378 Phosphotransferase system, EIIC Thethe_01704 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_01705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_01705 PF00874 PRD domain Thethe_01705 PF05043 Mga helix-turn-helix domain Thethe_01705 PF08279 HTH domain Thethe_01709 PF01134 Glucose inhibited division protein A Thethe_01709 PF13932 GidA associated domain Thethe_01711 PF01968 Hydantoinase/oxoprolinase Thethe_01711 PF05378 Hydantoinase/oxoprolinase N-terminal region Thethe_01719 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01720 PF00480 ROK family Thethe_01720 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thethe_01724 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Thethe_01724 PF04616 Glycosyl hydrolases family 43 Thethe_01725 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thethe_01725 PF16355 Domain of unknown function (DUF4982) Thethe_01725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Thethe_01725 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Thethe_01725 PF00703 Glycosyl hydrolases family 2 Thethe_01726 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01727 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01733 PF00106 short chain dehydrogenase Thethe_01734 PF00294 pfkB family carbohydrate kinase Thethe_01735 PF08240 Alcohol dehydrogenase GroES-like domain Thethe_01735 PF00107 Zinc-binding dehydrogenase Thethe_01737 PF01116 Fructose-bisphosphate aldolase class-II Thethe_01739 PF03613 PTS system mannose/fructose/sorbose family IID component Thethe_01740 PF03609 PTS system sorbose-specific iic component Thethe_01741 PF03830 PTS system sorbose subfamily IIB component Thethe_01742 PF03610 PTS system fructose IIA component Thethe_01742 PF03830 PTS system sorbose subfamily IIB component Thethe_01743 PF00874 PRD domain Thethe_01743 PF00158 Sigma-54 interaction domain Thethe_01743 PF03610 PTS system fructose IIA component Thethe_01750 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thethe_01750 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thethe_01751 PF02660 Glycerol-3-phosphate acyltransferase Thethe_01752 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thethe_01752 PF01926 50S ribosome-binding GTPase Thethe_01758 PF01895 PhoU domain Thethe_01759 PF00005 ABC transporter Thethe_01760 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01761 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01762 PF12849 PBP superfamily domain Thethe_01763 PF16736 Single Cache-like Thethe_01763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01763 PF00989 PAS fold Thethe_01763 PF00512 His Kinase A (phospho-acceptor) domain Thethe_01764 PF00072 Response regulator receiver domain Thethe_01764 PF00486 Transcriptional regulatory protein, C terminal Thethe_01765 PF03477 ATP cone domain Thethe_01766 PF05239 PRC-barrel domain Thethe_01767 PF04542 Sigma-70 region 2 Thethe_01767 PF04539 Sigma-70 region 3 Thethe_01767 PF04545 Sigma-70, region 4 Thethe_01768 PF04542 Sigma-70 region 2 Thethe_01768 PF04545 Sigma-70, region 4 Thethe_01769 PF03419 Sporulation factor SpoIIGA Thethe_01770 PF12327 FtsZ family, C-terminal domain Thethe_01770 PF00091 Tubulin/FtsZ family, GTPase domain Thethe_01771 PF02491 SHS2 domain inserted in FTSA Thethe_01772 PF06947 Protein of unknown function (DUF1290) Thethe_01773 PF05949 Bacterial protein of unknown function (DUF881) Thethe_01774 PF08478 POTRA domain, FtsQ-type Thethe_01774 PF03799 Cell division protein FtsQ Thethe_01775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thethe_01776 PF03033 Glycosyltransferase family 28 N-terminal domain Thethe_01776 PF04101 Glycosyltransferase family 28 C-terminal domain Thethe_01777 PF01098 Cell cycle protein Thethe_01778 PF02875 Mur ligase family, glutamate ligase domain Thethe_01778 PF08245 Mur ligase middle domain Thethe_01779 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thethe_01779 PF00953 Glycosyl transferase family 4 Thethe_01780 PF01225 Mur ligase family, catalytic domain Thethe_01780 PF02875 Mur ligase family, glutamate ligase domain Thethe_01780 PF08245 Mur ligase middle domain Thethe_01781 PF08245 Mur ligase middle domain Thethe_01781 PF02875 Mur ligase family, glutamate ligase domain Thethe_01781 PF01225 Mur ligase family, catalytic domain Thethe_01782 PF03793 PASTA domain Thethe_01782 PF03717 Penicillin-binding Protein dimerisation domain Thethe_01782 PF00905 Penicillin binding protein transpeptidase domain Thethe_01784 PF01795 MraW methylase family Thethe_01785 PF02381 MraZ protein, putative antitoxin-like Thethe_01786 PF00675 Insulinase (Peptidase family M16) Thethe_01786 PF05193 Peptidase M16 inactive domain Thethe_01787 PF05193 Peptidase M16 inactive domain Thethe_01788 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Thethe_01789 PF01926 50S ribosome-binding GTPase Thethe_01789 PF06071 Protein of unknown function (DUF933) Thethe_01790 PF02926 THUMP domain Thethe_01790 PF02568 Thiamine biosynthesis protein (ThiI) Thethe_01791 PF00266 Aminotransferase class-V Thethe_01797 PF02583 Metal-sensitive transcriptional repressor Thethe_01798 PF13439 Glycosyltransferase Family 4 Thethe_01802 PF00188 Cysteine-rich secretory protein family Thethe_01803 PF02127 Aminopeptidase I zinc metalloprotease (M18) Thethe_01804 PF00072 Response regulator receiver domain Thethe_01804 PF00196 Bacterial regulatory proteins, luxR family Thethe_01805 PF07730 Histidine kinase Thethe_01805 PF05384 Sensor protein DegS Thethe_01805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01809 PF01713 Smr domain Thethe_01809 PF00488 MutS domain V Thethe_01810 PF01136 Peptidase family U32 Thethe_01810 PF12392 Collagenase Thethe_01812 PF03484 tRNA synthetase B5 domain Thethe_01812 PF01588 Putative tRNA binding domain Thethe_01812 PF03147 Ferredoxin-fold anticodon binding domain Thethe_01812 PF03483 B3/4 domain Thethe_01812 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thethe_01813 PF01409 tRNA synthetases class II core domain (F) Thethe_01813 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Thethe_01814 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thethe_01814 PF00588 SpoU rRNA Methylase family Thethe_01815 PF00453 Ribosomal protein L20 Thethe_01816 PF01632 Ribosomal protein L35 Thethe_01817 PF05198 Translation initiation factor IF-3, N-terminal domain Thethe_01817 PF00707 Translation initiation factor IF-3, C-terminal domain Thethe_01819 PF01264 Chorismate synthase Thethe_01821 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_01821 PF02824 TGS domain Thethe_01821 PF03129 Anticodon binding domain Thethe_01821 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thethe_01822 PF04286 Protein of unknown function (DUF445) Thethe_01825 PF00072 Response regulator receiver domain Thethe_01825 PF00486 Transcriptional regulatory protein, C terminal Thethe_01826 PF00232 Glycosyl hydrolase family 1 Thethe_01828 PF13537 Glutamine amidotransferase domain Thethe_01828 PF00733 Asparagine synthase Thethe_01829 PF00543 Nitrogen regulatory protein P-II Thethe_01832 PF00909 Ammonium Transporter Family Thethe_01833 PF01969 Protein of unknown function DUF111 Thethe_01834 PF00731 AIR carboxylase Thethe_01835 PF02540 NAD synthase Thethe_01836 PF03328 HpcH/HpaI aldolase/citrate lyase family Thethe_01839 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thethe_01840 PF00994 Probable molybdopterin binding domain Thethe_01840 PF02464 Competence-damaged protein Thethe_01842 PF01614 Bacterial transcriptional regulator Thethe_01842 PF09339 IclR helix-turn-helix domain Thethe_01843 PF02653 Branched-chain amino acid transport system / permease component Thethe_01845 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Thethe_01845 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Thethe_01847 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01848 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01849 PF00543 Nitrogen regulatory protein P-II Thethe_01850 PF00543 Nitrogen regulatory protein P-II Thethe_01852 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01853 PF00148 Nitrogenase component 1 type Oxidoreductase Thethe_01854 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thethe_01855 PF04055 Radical SAM superfamily Thethe_01855 PF02579 Dinitrogenase iron-molybdenum cofactor Thethe_01856 PF04055 Radical SAM superfamily Thethe_01856 PF02579 Dinitrogenase iron-molybdenum cofactor Thethe_01858 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01861 PF02581 Thiamine monophosphate synthase Thethe_01862 PF02110 Hydroxyethylthiazole kinase family Thethe_01864 PF08543 Phosphomethylpyrimidine kinase Thethe_01864 PF02581 Thiamine monophosphate synthase Thethe_01867 PF00664 ABC transporter transmembrane region Thethe_01867 PF00005 ABC transporter Thethe_01868 PF03069 Acetamidase/Formamidase family Thethe_01869 PF00892 EamA-like transporter family Thethe_01870 PF13426 PAS domain Thethe_01870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01870 PF00672 HAMP domain Thethe_01870 PF00512 His Kinase A (phospho-acceptor) domain Thethe_01871 PF00486 Transcriptional regulatory protein, C terminal Thethe_01871 PF00072 Response regulator receiver domain Thethe_01874 PF00005 ABC transporter Thethe_01876 PF13722 5TM C-terminal transporter carbon starvation CstA Thethe_01876 PF02554 Carbon starvation protein CstA Thethe_01877 PF00072 Response regulator receiver domain Thethe_01877 PF04397 LytTr DNA-binding domain Thethe_01878 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01878 PF07694 5TMR of 5TMR-LYT Thethe_01878 PF06580 Histidine kinase Thethe_01884 PF00176 SNF2 family N-terminal domain Thethe_01884 PF00271 Helicase conserved C-terminal domain Thethe_01889 PF08378 Nuclease-related domain Thethe_01891 PF13302 Acetyltransferase (GNAT) domain Thethe_01892 PF03845 Spore germination protein Thethe_01897 PF00294 pfkB family carbohydrate kinase Thethe_01898 PF07555 beta-N-acetylglucosaminidase Thethe_01898 PF02838 Glycosyl hydrolase family 20, domain 2 Thethe_01901 PF00890 FAD binding domain Thethe_01902 PF02368 Bacterial Ig-like domain (group 2) Thethe_01902 PF00395 S-layer homology domain Thethe_01902 PF02638 Glycosyl hydrolase-like 10 Thethe_01903 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01904 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01905 PF01547 Bacterial extracellular solute-binding protein Thethe_01906 PF00480 ROK family Thethe_01907 PF01418 Helix-turn-helix domain, rpiR family Thethe_01907 PF01380 SIS domain Thethe_01908 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Thethe_01909 PF16990 Carbohydrate binding module (family 35) Thethe_01909 PF07705 CARDB Thethe_01909 PF13199 Glycosyl hydrolase family 66 Thethe_01909 PF03422 Carbohydrate binding module (family 6) Thethe_01910 PF00723 Glycosyl hydrolases family 15 Thethe_01911 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01912 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01914 PF00480 ROK family Thethe_01914 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thethe_01917 PF01081 KDPG and KHG aldolase Thethe_01918 PF13378 Enolase C-terminal domain-like Thethe_01918 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Thethe_01919 PF03611 PTS system sugar-specific permease component Thethe_01921 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_01922 PF00158 Sigma-54 interaction domain Thethe_01922 PF03610 PTS system fructose IIA component Thethe_01922 PF00874 PRD domain Thethe_01925 PF00892 EamA-like transporter family Thethe_01926 PF00356 Bacterial regulatory proteins, lacI family Thethe_01929 PF00128 Alpha amylase, catalytic domain Thethe_01930 PF00294 pfkB family carbohydrate kinase Thethe_01932 PF00251 Glycosyl hydrolases family 32 N-terminal domain Thethe_01932 PF08244 Glycosyl hydrolases family 32 C terminal Thethe_01933 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01934 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01936 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thethe_01937 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thethe_01938 PF00150 Cellulase (glycosyl hydrolase family 5) Thethe_01938 PF00942 Cellulose binding domain Thethe_01938 PF00331 Glycosyl hydrolase family 10 Thethe_01939 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01940 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_01942 PF00356 Bacterial regulatory proteins, lacI family Thethe_01944 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thethe_01946 PF00356 Bacterial regulatory proteins, lacI family Thethe_01952 PF03030 Inorganic H+ pyrophosphatase Thethe_01953 PF02080 TrkA-C domain Thethe_01953 PF02254 TrkA-N domain Thethe_01954 PF02080 TrkA-C domain Thethe_01954 PF02254 TrkA-N domain Thethe_01955 PF00690 Cation transporter/ATPase, N-terminus Thethe_01955 PF00689 Cation transporting ATPase, C-terminus Thethe_01958 PF01571 Aminomethyltransferase folate-binding domain Thethe_01958 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thethe_01959 PF01597 Glycine cleavage H-protein Thethe_01960 PF02347 Glycine cleavage system P-protein Thethe_01961 PF02347 Glycine cleavage system P-protein Thethe_01963 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_01963 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thethe_01964 PF03099 Biotin/lipoate A/B protein ligase family Thethe_01964 PF10437 Bacterial lipoate protein ligase C-terminus Thethe_01965 PF13180 PDZ domain Thethe_01967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_01967 PF00512 His Kinase A (phospho-acceptor) domain Thethe_01967 PF00989 PAS fold Thethe_01967 PF16736 Single Cache-like Thethe_01968 PF00486 Transcriptional regulatory protein, C terminal Thethe_01968 PF00072 Response regulator receiver domain Thethe_01973 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thethe_01973 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thethe_01978 PF13537 Glutamine amidotransferase domain Thethe_01978 PF00733 Asparagine synthase Thethe_01978 PF00733 Asparagine synthase Thethe_01978 PF13537 Glutamine amidotransferase domain Thethe_01979 PF02585 GlcNAc-PI de-N-acetylase Thethe_01980 PF17806 Sarcosine oxidase A3 domain Thethe_01980 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_01980 PF01571 Aminomethyltransferase folate-binding domain Thethe_01980 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thethe_01981 PF03023 Lipid II flippase MurJ Thethe_01982 PF01548 Transposase Thethe_01982 PF02371 Transposase IS116/IS110/IS902 family Thethe_01983 PF00085 Thioredoxin Thethe_01987 PF03649 Uncharacterised protein family (UPF0014) Thethe_01988 PF00005 ABC transporter Thethe_01995 PF04055 Radical SAM superfamily Thethe_01996 PF01380 SIS domain Thethe_01997 PF00294 pfkB family carbohydrate kinase Thethe_01998 PF01116 Fructose-bisphosphate aldolase class-II Thethe_01999 PF13419 Haloacid dehalogenase-like hydrolase Thethe_02000 PF01979 Amidohydrolase family Thethe_02001 PF13580 SIS domain Thethe_02003 PF03610 PTS system fructose IIA component Thethe_02003 PF03830 PTS system sorbose subfamily IIB component Thethe_02004 PF03613 PTS system mannose/fructose/sorbose family IID component Thethe_02005 PF03609 PTS system sorbose-specific iic component Thethe_02006 PF03830 PTS system sorbose subfamily IIB component Thethe_02007 PF00158 Sigma-54 interaction domain Thethe_02007 PF03610 PTS system fructose IIA component Thethe_02007 PF00874 PRD domain Thethe_02008 PF00313 'Cold-shock' DNA-binding domain Thethe_02010 PF02146 Sir2 family Thethe_02013 PF01106 NifU-like domain Thethe_02014 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thethe_02016 PF04011 LemA family Thethe_02017 PF13185 GAF domain Thethe_02018 PF01790 Prolipoprotein diacylglyceryl transferase Thethe_02020 PF03772 Competence protein Thethe_02020 PF00753 Metallo-beta-lactamase superfamily Thethe_02023 PF13472 GDSL-like Lipase/Acylhydrolase family Thethe_02026 PF01238 Phosphomannose isomerase type I Thethe_02027 PF01048 Phosphorylase superfamily Thethe_02030 PF01784 NIF3 (NGG1p interacting factor 3) Thethe_02031 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Thethe_02034 PF04545 Sigma-70, region 4 Thethe_02034 PF03979 Sigma-70 factor, region 1.1 Thethe_02034 PF00140 Sigma-70 factor, region 1.2 Thethe_02034 PF04539 Sigma-70 region 3 Thethe_02034 PF04542 Sigma-70 region 2 Thethe_02035 PF01807 CHC2 zinc finger Thethe_02035 PF08275 DNA primase catalytic core, N-terminal domain Thethe_02035 PF10410 DnaB-helicase binding domain of primase Thethe_02036 PF13286 Phosphohydrolase-associated domain Thethe_02036 PF01966 HD domain Thethe_02037 PF03840 Preprotein translocase SecG subunit Thethe_02038 PF02001 Protein of unknown function DUF134 Thethe_02039 PF03952 Enolase, N-terminal domain Thethe_02039 PF00113 Enolase, C-terminal TIM barrel domain Thethe_02041 PF00121 Triosephosphate isomerase Thethe_02042 PF00162 Phosphoglycerate kinase Thethe_02043 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thethe_02043 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thethe_02044 PF04198 Putative sugar-binding domain Thethe_02045 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thethe_02045 PF04552 Sigma-54, DNA binding domain Thethe_02045 PF04963 Sigma-54 factor, core binding domain Thethe_02046 PF00708 Acylphosphatase Thethe_02048 PF01475 Ferric uptake regulator family Thethe_02049 PF04294 VanW like protein Thethe_02050 PF10576 Iron-sulfur binding domain of endonuclease III Thethe_02050 PF00730 HhH-GPD superfamily base excision DNA repair protein Thethe_02050 PF00633 Helix-hairpin-helix motif Thethe_02051 PF08331 Domain of unknown function (DUF1730) Thethe_02052 PF05362 Lon protease (S16) C-terminal proteolytic domain Thethe_02052 PF13654 AAA domain Thethe_02057 PF13186 Iron-sulfur cluster-binding domain Thethe_02057 PF04055 Radical SAM superfamily Thethe_02058 PF03129 Anticodon binding domain Thethe_02058 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_02058 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thethe_02058 PF02824 TGS domain Thethe_02059 PF02915 Rubrerythrin Thethe_02066 PF01548 Transposase Thethe_02066 PF02371 Transposase IS116/IS110/IS902 family Thethe_02077 PF00849 RNA pseudouridylate synthase Thethe_02080 PF02073 Thermophilic metalloprotease (M29) Thethe_02081 PF13361 UvrD-like helicase C-terminal domain Thethe_02081 PF00580 UvrD/REP helicase N-terminal domain Thethe_02081 PF12705 PD-(D/E)XK nuclease superfamily Thethe_02082 PF12705 PD-(D/E)XK nuclease superfamily Thethe_02083 PF00682 HMGL-like Thethe_02083 PF08502 LeuA allosteric (dimerisation) domain Thethe_02084 PF01070 FMN-dependent dehydrogenase Thethe_02085 PF00881 Nitroreductase family Thethe_02087 PF14489 QueF-like protein Thethe_02089 PF02706 Chain length determinant protein Thethe_02089 PF13807 G-rich domain on putative tyrosine kinase Thethe_02090 PF00483 Nucleotidyl transferase Thethe_02092 PF00440 Bacterial regulatory proteins, tetR family Thethe_02092 PF17934 Tetracyclin repressor-like, C-terminal domain Thethe_02095 PF00535 Glycosyl transferase family 2 Thethe_02095 PF13181 Tetratricopeptide repeat Thethe_02099 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thethe_02105 PF01734 Patatin-like phospholipase Thethe_02107 PF00440 Bacterial regulatory proteins, tetR family Thethe_02107 PF13977 BetI-type transcriptional repressor, C-terminal Thethe_02115 PF00465 Iron-containing alcohol dehydrogenase Thethe_02116 PF00171 Aldehyde dehydrogenase family Thethe_02117 PF01923 Cobalamin adenosyltransferase Thethe_02118 PF03319 Ethanolamine utilisation protein EutN/carboxysome Thethe_02120 PF06130 Phosphate propanoyltransferase Thethe_02121 PF00936 BMC domain Thethe_02122 PF00936 BMC domain Thethe_02124 PF18427 DD-reactivating factor swiveling domain Thethe_02124 PF08841 Diol dehydratase reactivase ATPase-like domain Thethe_02125 PF02287 Dehydratase small subunit Thethe_02126 PF02288 Dehydratase medium subunit Thethe_02127 PF02286 Dehydratase large subunit Thethe_02128 PF00936 BMC domain Thethe_02129 PF00936 BMC domain Thethe_02131 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_02132 PF00196 Bacterial regulatory proteins, luxR family Thethe_02132 PF00072 Response regulator receiver domain Thethe_02133 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thethe_02133 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thethe_02134 PF00230 Major intrinsic protein Thethe_02135 PF00171 Aldehyde dehydrogenase family Thethe_02137 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thethe_02137 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thethe_02138 PF00701 Dihydrodipicolinate synthetase family Thethe_02139 PF01116 Fructose-bisphosphate aldolase class-II Thethe_02140 PF02811 PHP domain Thethe_02141 PF02502 Ribose/Galactose Isomerase Thethe_02142 PF02779 Transketolase, pyrimidine binding domain Thethe_02142 PF02780 Transketolase, C-terminal domain Thethe_02143 PF00456 Transketolase, thiamine diphosphate binding domain Thethe_02144 PF00158 Sigma-54 interaction domain Thethe_02155 PF01725 Ham1 family Thethe_02156 PF03725 3' exoribonuclease family, domain 2 Thethe_02156 PF01138 3' exoribonuclease family, domain 1 Thethe_02157 PF05036 Sporulation related domain Thethe_02157 PF01520 N-acetylmuramoyl-L-alanine amidase Thethe_02159 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thethe_02159 PF00005 ABC transporter Thethe_02160 PF00005 ABC transporter Thethe_02160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thethe_02161 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02161 PF12911 N-terminal TM domain of oligopeptide transport permease C Thethe_02162 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02163 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thethe_02164 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thethe_02165 PF02934 GatB/GatE catalytic domain Thethe_02165 PF02637 GatB domain Thethe_02166 PF01425 Amidase Thethe_02167 PF02686 Glu-tRNAGln amidotransferase C subunit Thethe_02168 PF03120 NAD-dependent DNA ligase OB-fold domain Thethe_02168 PF01653 NAD-dependent DNA ligase adenylation domain Thethe_02168 PF12826 Helix-hairpin-helix motif Thethe_02168 PF00533 BRCA1 C Terminus (BRCT) domain Thethe_02168 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thethe_02169 PF00580 UvrD/REP helicase N-terminal domain Thethe_02169 PF13361 UvrD-like helicase C-terminal domain Thethe_02170 PF01371 Trp repressor protein Thethe_02171 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thethe_02172 PF02378 Phosphotransferase system, EIIC Thethe_02175 PF08279 HTH domain Thethe_02175 PF05043 Mga helix-turn-helix domain Thethe_02175 PF00874 PRD domain Thethe_02175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_02175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02177 PF09383 NIL domain Thethe_02177 PF00005 ABC transporter Thethe_02178 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02179 PF03180 NLPA lipoprotein Thethe_02180 PF14667 Polysaccharide biosynthesis C-terminal domain Thethe_02180 PF01943 Polysaccharide biosynthesis protein Thethe_02181 PF02664 S-Ribosylhomocysteinase (LuxS) Thethe_02184 PF01546 Peptidase family M20/M25/M40 Thethe_02184 PF07687 Peptidase dimerisation domain Thethe_02185 PF01177 Asp/Glu/Hydantoin racemase Thethe_02186 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thethe_02186 PF02843 Phosphoribosylglycinamide synthetase, C domain Thethe_02186 PF02844 Phosphoribosylglycinamide synthetase, N domain Thethe_02187 PF01808 AICARFT/IMPCHase bienzyme Thethe_02187 PF02142 MGS-like domain Thethe_02188 PF00551 Formyl transferase Thethe_02189 PF02769 AIR synthase related protein, C-terminal domain Thethe_02189 PF00586 AIR synthase related protein, N-terminal domain Thethe_02190 PF00156 Phosphoribosyl transferase domain Thethe_02191 PF01259 SAICAR synthetase Thethe_02192 PF00731 AIR carboxylase Thethe_02193 PF00860 Permease family Thethe_02194 PF02540 NAD synthase Thethe_02194 PF00117 Glutamine amidotransferase class-I Thethe_02194 PF00958 GMP synthase C terminal domain Thethe_02195 PF00478 IMP dehydrogenase / GMP reductase domain Thethe_02195 PF00571 CBS domain Thethe_02196 PF00118 TCP-1/cpn60 chaperonin family Thethe_02197 PF00166 Chaperonin 10 Kd subunit Thethe_02202 PF00082 Subtilase family Thethe_02204 PF00005 ABC transporter Thethe_02204 PF09383 NIL domain Thethe_02205 PF02653 Branched-chain amino acid transport system / permease component Thethe_02208 PF02653 Branched-chain amino acid transport system / permease component Thethe_02209 PF11862 Domain of unknown function (DUF3382) Thethe_02209 PF02653 Branched-chain amino acid transport system / permease component Thethe_02210 PF00005 ABC transporter Thethe_02210 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thethe_02211 PF00005 ABC transporter Thethe_02213 PF00664 ABC transporter transmembrane region Thethe_02213 PF00005 ABC transporter Thethe_02220 PF04474 Protein of unknown function (DUF554) Thethe_02224 PF04397 LytTr DNA-binding domain Thethe_02224 PF00072 Response regulator receiver domain Thethe_02225 PF01566 Natural resistance-associated macrophage protein Thethe_02226 PF06971 Putative DNA-binding protein N-terminus Thethe_02226 PF02629 CoA binding domain Thethe_02227 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thethe_02227 PF00691 OmpA family Thethe_02228 PF01618 MotA/TolQ/ExbB proton channel family Thethe_02229 PF00005 ABC transporter Thethe_02229 PF12848 ABC transporter Thethe_02229 PF16326 ABC transporter C-terminal domain Thethe_02230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thethe_02231 PF00814 Glycoprotease family Thethe_02232 PF00583 Acetyltransferase (GNAT) family Thethe_02233 PF00814 Glycoprotease family Thethe_02234 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thethe_02235 PF12822 ECF transporter, substrate-specific component Thethe_02236 PF00696 Amino acid kinase family Thethe_02237 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thethe_02237 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thethe_02238 PF01979 Amidohydrolase family Thethe_02239 PF09335 SNARE associated Golgi protein Thethe_02240 PF00149 Calcineurin-like phosphoesterase Thethe_02241 PF17674 HHH domain Thethe_02241 PF09371 Tex-like protein N-terminal domain Thethe_02241 PF16921 Tex protein YqgF-like domain Thethe_02241 PF00575 S1 RNA binding domain Thethe_02243 PF07516 SecA Wing and Scaffold domain Thethe_02243 PF01043 SecA preprotein cross-linking domain Thethe_02243 PF07517 SecA DEAD-like domain Thethe_02243 PF02810 SEC-C motif Thethe_02245 PF08279 HTH domain Thethe_02245 PF02829 3H domain Thethe_02247 PF00072 Response regulator receiver domain Thethe_02249 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thethe_02249 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Thethe_02250 PF00005 ABC transporter Thethe_02251 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02252 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thethe_02255 PF02561 Flagellar protein FliS Thethe_02256 PF07196 Flagellin hook IN motif Thethe_02256 PF02465 Flagellar hook-associated protein 2 N-terminus Thethe_02256 PF07195 Flagellar hook-associated protein 2 C-terminus Thethe_02263 PF00535 Glycosyl transferase family 2 Thethe_02264 PF00700 Bacterial flagellin C-terminal helical region Thethe_02264 PF00669 Bacterial flagellin N-terminal helical region Thethe_02265 PF02599 Global regulator protein family Thethe_02266 PF02623 FliW protein Thethe_02268 PF00700 Bacterial flagellin C-terminal helical region Thethe_02268 PF00669 Bacterial flagellin N-terminal helical region Thethe_02269 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thethe_02269 PF00460 Flagella basal body rod protein Thethe_02273 PF00156 Phosphoribosyl transferase domain Thethe_02274 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Thethe_02274 PF14490 Helix-hairpin-helix containing domain Thethe_02274 PF13538 UvrD-like helicase C-terminal domain Thethe_02276 PF01966 HD domain Thethe_02277 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thethe_02277 PF02772 S-adenosylmethionine synthetase, central domain Thethe_02277 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thethe_02278 PF02915 Rubrerythrin Thethe_02279 PF00578 AhpC/TSA family Thethe_02283 PF00121 Triosephosphate isomerase Thethe_02285 PF06866 Protein of unknown function (DUF1256) Thethe_02286 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_02288 PF16736 Single Cache-like Thethe_02288 PF00989 PAS fold Thethe_02288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_02288 PF00512 His Kinase A (phospho-acceptor) domain Thethe_02289 PF00486 Transcriptional regulatory protein, C terminal Thethe_02289 PF00072 Response regulator receiver domain Thethe_02290 PF01979 Amidohydrolase family Thethe_02291 PF00356 Bacterial regulatory proteins, lacI family Thethe_02294 PF04239 Protein of unknown function (DUF421) Thethe_02301 PF02548 Ketopantoate hydroxymethyltransferase Thethe_02302 PF02569 Pantoate-beta-alanine ligase Thethe_02303 PF02261 Aspartate decarboxylase Thethe_02305 PF01479 S4 domain Thethe_02305 PF00579 tRNA synthetases class I (W and Y) Thethe_02307 PF00330 Aconitase family (aconitate hydratase) Thethe_02308 PF00682 HMGL-like Thethe_02309 PF03123 CAT RNA binding domain Thethe_02309 PF00874 PRD domain Thethe_02310 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thethe_02311 PF02378 Phosphotransferase system, EIIC Thethe_02311 PF00367 phosphotransferase system, EIIB Thethe_02313 PF02743 Cache domain Thethe_02313 PF00672 HAMP domain Thethe_02313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thethe_02314 PF00591 Glycosyl transferase family, a/b domain Thethe_02314 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Thethe_02314 PF02885 Glycosyl transferase family, helical bundle domain Thethe_02315 PF01676 Metalloenzyme superfamily Thethe_02316 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thethe_02317 PF07702 UTRA domain Thethe_02317 PF00392 Bacterial regulatory proteins, gntR family Thethe_02321 PF02608 ABC transporter substrate-binding protein PnrA-like Thethe_02322 PF04961 Formiminotransferase-cyclodeaminase Thethe_02323 PF02971 Formiminotransferase domain Thethe_02323 PF07837 Formiminotransferase domain, N-terminal subdomain Thethe_02325 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thethe_02325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thethe_02325 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thethe_02325 PF10371 Domain of unknown function Thethe_02325 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thethe_02326 PF00180 Isocitrate/isopropylmalate dehydrogenase Thethe_02332 PF00226 DnaJ domain Thethe_02332 PF01556 DnaJ C terminal domain Thethe_02332 PF00684 DnaJ central domain Thethe_02337 PF02654 Cobalamin-5-phosphate synthase Thethe_02338 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Thethe_02339 PF00155 Aminotransferase class I and II Thethe_02342 PF03186 CobD/Cbib protein Thethe_02343 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thethe_02343 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thethe_02344 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thethe_02344 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thethe_02345 PF00005 ABC transporter Thethe_02346 PF01032 FecCD transport family Thethe_02347 PF01497 Periplasmic binding protein Thethe_02351 PF04754 Putative transposase, YhgA-like Thethe_02357 PF04754 Putative transposase, YhgA-like Thethe_02359 PF00005 ABC transporter Thethe_02364 PF00005 ABC transporter Thethe_02368 PF00005 ABC transporter Thethe_02368 PF02687 FtsX-like permease family Thethe_02368 PF12704 MacB-like periplasmic core domain Thethe_02375 PF13520 Amino acid permease Thethe_02376 PF01170 Putative RNA methylase family UPF0020 Thethe_02376 PF02926 THUMP domain Thethe_02377 PF13649 Methyltransferase domain Thethe_02379 PF01037 Lrp/AsnC ligand binding domain Thethe_02380 PF00155 Aminotransferase class I and II Thethe_02382 PF17910 FeoB cytosolic helical domain Thethe_02382 PF02421 Ferrous iron transport protein B Thethe_02382 PF07670 Nucleoside recognition Thethe_02382 PF07664 Ferrous iron transport protein B C terminus Thethe_02384 PF01569 PAP2 superfamily Thethe_02386 PF01297 Zinc-uptake complex component A periplasmic Thethe_02387 PF00005 ABC transporter Thethe_02388 PF00950 ABC 3 transport family Thethe_02394 PF01925 Sulfite exporter TauE/SafE Thethe_02395 PF01207 Dihydrouridine synthase (Dus) Thethe_02396 PF02872 5'-nucleotidase, C-terminal domain Thethe_02396 PF00149 Calcineurin-like phosphoesterase Thethe_02397 PF13580 SIS domain Thethe_02399 PF00367 phosphotransferase system, EIIB Thethe_02399 PF02378 Phosphotransferase system, EIIC Thethe_02400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thethe_02401 PF01380 SIS domain Thethe_02401 PF01418 Helix-turn-helix domain, rpiR family Thethe_02403 PF11975 Family 4 glycosyl hydrolase C-terminal domain Thethe_02403 PF02056 Family 4 glycosyl hydrolase Thethe_02404 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thethe_02404 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thethe_02405 PF01695 IstB-like ATP binding protein Thethe_02407 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thethe_02408 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02409 PF00232 Glycosyl hydrolase family 1 Thethe_02411 PF00158 Sigma-54 interaction domain Thethe_02411 PF00874 PRD domain Thethe_02411 PF03610 PTS system fructose IIA component Thethe_02412 PF13520 Amino acid permease Thethe_02413 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thethe_02415 PF01384 Phosphate transporter family Thethe_02419 PF03591 AzlC protein Thethe_02420 PF13603 Leucyl-tRNA synthetase, Domain 2 Thethe_02420 PF08264 Anticodon-binding domain of tRNA Thethe_02420 PF00133 tRNA synthetases class I (I, L, M and V) Thethe_02420 PF09334 tRNA synthetases class I (M) Thethe_02423 PF00905 Penicillin binding protein transpeptidase domain Thethe_02423 PF00912 Transglycosylase Thethe_02424 PF00155 Aminotransferase class I and II Thethe_02425 PF02653 Branched-chain amino acid transport system / permease component Thethe_02426 PF00005 ABC transporter Thethe_02427 PF13407 Periplasmic binding protein domain Thethe_02428 PF13407 Periplasmic binding protein domain Thethe_02429 PF12833 Helix-turn-helix domain Thethe_02429 PF00072 Response regulator receiver domain Thethe_02430 PF07694 5TMR of 5TMR-LYT Thethe_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_02430 PF06580 Histidine kinase Thethe_02432 PF17099 Tryptophan transporter TrpP Thethe_02435 PF04962 KduI/IolB family Thethe_02436 PF00356 Bacterial regulatory proteins, lacI family Thethe_02437 PF01232 Mannitol dehydrogenase Rossmann domain Thethe_02437 PF08125 Mannitol dehydrogenase C-terminal domain Thethe_02438 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thethe_02438 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thethe_02439 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thethe_02439 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thethe_02440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thethe_02440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thethe_02442 PF08220 DeoR-like helix-turn-helix domain Thethe_02442 PF00455 DeoR C terminal sensor domain Thethe_02444 PF01554 MatE Thethe_02445 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Thethe_02445 PF08666 SAF domain Thethe_02446 PF01232 Mannitol dehydrogenase Rossmann domain Thethe_02446 PF08125 Mannitol dehydrogenase C-terminal domain Thethe_02447 PF02056 Family 4 glycosyl hydrolase Thethe_02447 PF11975 Family 4 glycosyl hydrolase C-terminal domain Thethe_02448 PF00295 Glycosyl hydrolases family 28 Thethe_02449 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02450 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02452 PF07470 Glycosyl Hydrolase Family 88 Thethe_02453 PF00356 Bacterial regulatory proteins, lacI family Thethe_02454 PF02614 Glucuronate isomerase Thethe_02455 PF01476 LysM domain Thethe_02455 PF00877 NlpC/P60 family Thethe_02457 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thethe_02457 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_02460 PF00056 lactate/malate dehydrogenase, NAD binding domain Thethe_02460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Thethe_02466 PF09335 SNARE associated Golgi protein Thethe_02467 PF00534 Glycosyl transferases group 1 Thethe_02467 PF13439 Glycosyltransferase Family 4 Thethe_02468 PF01636 Phosphotransferase enzyme family Thethe_02468 PF18085 Maltokinase N-terminal cap domain Thethe_02469 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Thethe_02469 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Thethe_02472 PF01145 SPFH domain / Band 7 family Thethe_02474 PF00232 Glycosyl hydrolase family 1 Thethe_02475 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_02475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thethe_02476 PF02378 Phosphotransferase system, EIIC Thethe_02477 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02478 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thethe_02479 PF05043 Mga helix-turn-helix domain Thethe_02479 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_02479 PF00874 PRD domain Thethe_02479 PF08279 HTH domain Thethe_02481 PF02378 Phosphotransferase system, EIIC Thethe_02482 PF00232 Glycosyl hydrolase family 1 Thethe_02483 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02484 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thethe_02485 PF00158 Sigma-54 interaction domain Thethe_02485 PF03610 PTS system fructose IIA component Thethe_02485 PF00874 PRD domain Thethe_02489 PF06100 MCRA family Thethe_02491 PF09861 Lactate racemase N-terminal domain Thethe_02492 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thethe_02492 PF00753 Metallo-beta-lactamase superfamily Thethe_02492 PF10996 Beta-Casp domain Thethe_02493 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thethe_02494 PF00793 DAHP synthetase I family Thethe_02494 PF18152 DAHP synthase ferredoxin-like domain Thethe_02495 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Thethe_02497 PF00588 SpoU rRNA Methylase family Thethe_02499 PF01554 MatE Thethe_02500 PF11799 impB/mucB/samB family C-terminal domain Thethe_02500 PF00817 impB/mucB/samB family Thethe_02500 PF11798 IMS family HHH motif Thethe_02501 PF01022 Bacterial regulatory protein, arsR family Thethe_02502 PF00403 Heavy-metal-associated domain Thethe_02506 PF00440 Bacterial regulatory proteins, tetR family Thethe_02506 PF13977 BetI-type transcriptional repressor, C-terminal Thethe_02509 PF13732 Domain of unknown function (DUF4162) Thethe_02509 PF00005 ABC transporter Thethe_02513 PF01402 Ribbon-helix-helix protein, copG family Thethe_02513 PF08753 NikR C terminal nickel binding domain Thethe_02514 PF13190 PDGLE domain Thethe_02514 PF01891 Cobalt uptake substrate-specific transmembrane region Thethe_02515 PF13190 PDGLE domain Thethe_02515 PF01891 Cobalt uptake substrate-specific transmembrane region Thethe_02517 PF00005 ABC transporter Thethe_02520 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_02520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thethe_02521 PF04542 Sigma-70 region 2 Thethe_02521 PF08281 Sigma-70, region 4 Thethe_02523 PF00365 Phosphofructokinase Thethe_02524 PF01116 Fructose-bisphosphate aldolase class-II Thethe_02525 PF02779 Transketolase, pyrimidine binding domain Thethe_02525 PF02780 Transketolase, C-terminal domain Thethe_02526 PF00456 Transketolase, thiamine diphosphate binding domain Thethe_02527 PF03611 PTS system sugar-specific permease component Thethe_02528 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02529 PF13580 SIS domain Thethe_02530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_02531 PF00294 pfkB family carbohydrate kinase Thethe_02533 PF00356 Bacterial regulatory proteins, lacI family Thethe_02534 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thethe_02534 PF10996 Beta-Casp domain Thethe_02534 PF00753 Metallo-beta-lactamase superfamily Thethe_02535 PF01047 MarR family Thethe_02535 PF00480 ROK family Thethe_02537 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thethe_02537 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thethe_02538 PF01261 Xylose isomerase-like TIM barrel Thethe_02540 PF13538 UvrD-like helicase C-terminal domain Thethe_02542 PF08386 TAP-like protein Thethe_02542 PF00561 alpha/beta hydrolase fold Thethe_02543 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thethe_02543 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_02547 PF12708 Pectate lyase superfamily protein Thethe_02547 PF09992 Phosphodiester glycosidase Thethe_02548 PF00465 Iron-containing alcohol dehydrogenase Thethe_02550 PF00535 Glycosyl transferase family 2 Thethe_02550 PF13181 Tetratricopeptide repeat Thethe_02551 PF02743 Cache domain Thethe_02551 PF00672 HAMP domain Thethe_02551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thethe_02555 PF03023 Lipid II flippase MurJ Thethe_02556 PF07977 FabA-like domain Thethe_02557 PF00664 ABC transporter transmembrane region Thethe_02557 PF00005 ABC transporter Thethe_02558 PF00664 ABC transporter transmembrane region Thethe_02558 PF00005 ABC transporter Thethe_02560 PF00460 Flagella basal body rod protein Thethe_02560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thethe_02561 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thethe_02561 PF00460 Flagella basal body rod protein Thethe_02563 PF12116 Stage III sporulation protein D Thethe_02564 PF08460 Bacterial SH3 domain Thethe_02564 PF01551 Peptidase family M23 Thethe_02565 PF08486 Stage II sporulation protein Thethe_02573 PF01546 Peptidase family M20/M25/M40 Thethe_02574 PF13520 Amino acid permease Thethe_02576 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thethe_02578 PF02350 UDP-N-acetylglucosamine 2-epimerase Thethe_02579 PF00953 Glycosyl transferase family 4 Thethe_02582 PF02502 Ribose/Galactose Isomerase Thethe_02583 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thethe_02584 PF01300 Telomere recombination Thethe_02584 PF03481 Putative GTP-binding controlling metal-binding Thethe_02585 PF02535 ZIP Zinc transporter Thethe_02586 PF03462 PCRF domain Thethe_02586 PF00472 RF-1 domain Thethe_02587 PF17827 PrmC N-terminal domain Thethe_02587 PF05175 Methyltransferase small domain Thethe_02588 PF07136 Protein of unknown function (DUF1385) Thethe_02589 PF00265 Thymidine kinase Thethe_02590 PF01197 Ribosomal protein L31 Thethe_02591 PF07498 Rho termination factor, N-terminal domain Thethe_02591 PF07497 Rho termination factor, RNA-binding domain Thethe_02591 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thethe_02592 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thethe_02593 PF01116 Fructose-bisphosphate aldolase class-II Thethe_02594 PF00072 Response regulator receiver domain Thethe_02594 PF00486 Transcriptional regulatory protein, C terminal Thethe_02595 PF04122 Putative cell wall binding repeat 2 Thethe_02595 PF01520 N-acetylmuramoyl-L-alanine amidase Thethe_02596 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Thethe_02597 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thethe_02597 PF17806 Sarcosine oxidase A3 domain Thethe_02597 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thethe_02597 PF01571 Aminomethyltransferase folate-binding domain Thethe_02598 PF12704 MacB-like periplasmic core domain Thethe_02598 PF02687 FtsX-like permease family Thethe_02598 PF00005 ABC transporter Thethe_02599 PF00005 ABC transporter Thethe_02601 PF00664 ABC transporter transmembrane region Thethe_02601 PF00005 ABC transporter Thethe_02602 PF00664 ABC transporter transmembrane region Thethe_02602 PF00005 ABC transporter Thethe_02605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02605 PF02378 Phosphotransferase system, EIIC Thethe_02606 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thethe_02606 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thethe_02607 PF00294 pfkB family carbohydrate kinase Thethe_02608 PF00455 DeoR C terminal sensor domain Thethe_02608 PF08220 DeoR-like helix-turn-helix domain Thethe_02613 PF00535 Glycosyl transferase family 2 Thethe_02615 PF00535 Glycosyl transferase family 2 Thethe_02616 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Thethe_02619 PF04754 Putative transposase, YhgA-like Thethe_02620 PF00512 His Kinase A (phospho-acceptor) domain Thethe_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_02620 PF00672 HAMP domain Thethe_02621 PF00072 Response regulator receiver domain Thethe_02621 PF00486 Transcriptional regulatory protein, C terminal Thethe_02622 PF00395 S-layer homology domain Thethe_02628 PF06418 CTP synthase N-terminus Thethe_02628 PF00117 Glutamine amidotransferase class-I Thethe_02629 PF02811 PHP domain Thethe_02634 PF01842 ACT domain Thethe_02634 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thethe_02634 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thethe_02635 PF00266 Aminotransferase class-V Thethe_02636 PF02595 Glycerate kinase family Thethe_02637 PF01471 Putative peptidoglycan binding domain Thethe_02637 PF03572 Peptidase family S41 Thethe_02637 PF17820 PDZ domain Thethe_02638 PF00288 GHMP kinases N terminal domain Thethe_02638 PF08544 GHMP kinases C terminal Thethe_02639 PF00291 Pyridoxal-phosphate dependent enzyme Thethe_02640 PF01842 ACT domain Thethe_02640 PF03447 Homoserine dehydrogenase, NAD binding domain Thethe_02640 PF00742 Homoserine dehydrogenase Thethe_02643 PF00753 Metallo-beta-lactamase superfamily Thethe_02644 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thethe_02644 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thethe_02644 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thethe_02645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thethe_02646 PF00005 ABC transporter Thethe_02646 PF00664 ABC transporter transmembrane region Thethe_02647 PF00664 ABC transporter transmembrane region Thethe_02647 PF00005 ABC transporter Thethe_02648 PF01047 MarR family Thethe_02650 PF00654 Voltage gated chloride channel Thethe_02652 PF00005 ABC transporter Thethe_02652 PF00571 CBS domain Thethe_02653 PF00528 Binding-protein-dependent transport system inner membrane component Thethe_02654 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Thethe_02655 PF09827 CRISPR associated protein Cas2 Thethe_02656 PF01867 CRISPR associated protein Cas1 Thethe_02660 PF00270 DEAD/DEAH box helicase Thethe_02660 PF18395 Cas3 C-terminal domain Thethe_02660 PF18019 HD domain Thethe_02668 PF03787 RAMP superfamily Thethe_02675 PF01592 NifU-like N terminal domain Thethe_02676 PF00266 Aminotransferase class-V Thethe_02677 PF01458 Uncharacterized protein family (UPF0051) Thethe_02678 PF01458 Uncharacterized protein family (UPF0051) Thethe_02679 PF00005 ABC transporter Thethe_02680 PF00166 Chaperonin 10 Kd subunit Thethe_02681 PF00462 Glutaredoxin Thethe_02682 PF08141 Small acid-soluble spore protein H family Thethe_02686 PF00171 Aldehyde dehydrogenase family Thethe_02686 PF00465 Iron-containing alcohol dehydrogenase Thethe_02688 PF03063 Prismane/CO dehydrogenase family Thethe_02689 PF00248 Aldo/keto reductase family Thethe_02690 PF07690 Major Facilitator Superfamily Thethe_02693 PF10502 Signal peptidase, peptidase S26 Thethe_02695 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thethe_02702 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thethe_02702 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thethe_02711 PF13180 PDZ domain Thethe_02712 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thethe_02716 PF00672 HAMP domain Thethe_02716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_02716 PF13426 PAS domain Thethe_02716 PF00512 His Kinase A (phospho-acceptor) domain Thethe_02717 PF00486 Transcriptional regulatory protein, C terminal Thethe_02717 PF00072 Response regulator receiver domain Thethe_02719 PF01476 LysM domain Thethe_02719 PF08525 Opacity-associated protein A N-terminal motif Thethe_02719 PF01551 Peptidase family M23 Thethe_02727 PF04754 Putative transposase, YhgA-like Thethe_02736 PF00709 Adenylosuccinate synthetase Thethe_02740 PF13426 PAS domain Thethe_02740 PF00672 HAMP domain Thethe_02740 PF00512 His Kinase A (phospho-acceptor) domain Thethe_02740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_02742 PF00672 HAMP domain Thethe_02742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thethe_02742 PF00512 His Kinase A (phospho-acceptor) domain Thethe_02743 PF00072 Response regulator receiver domain Thethe_02743 PF00486 Transcriptional regulatory protein, C terminal Thethe_02744 PF01566 Natural resistance-associated macrophage protein Thethe_02745 PF01769 Divalent cation transporter Thethe_02745 PF00571 CBS domain Thethe_02745 PF03448 MgtE intracellular N domain Thethe_02747 PF13545 Crp-like helix-turn-helix domain Thethe_02747 PF00027 Cyclic nucleotide-binding domain Thethe_02748 PF03796 DnaB-like helicase C terminal domain Thethe_02748 PF00772 DnaB-like helicase N terminal domain Thethe_02749 PF01281 Ribosomal protein L9, N-terminal domain Thethe_02749 PF03948 Ribosomal protein L9, C-terminal domain Thethe_02750 PF01368 DHH family Thethe_02750 PF02272 DHHA1 domain Thethe_02753 PF01084 Ribosomal protein S18 Thethe_02754 PF00436 Single-strand binding protein family Thethe_02755 PF01250 Ribosomal protein S6 Thethe_02756 PF06107 Bacterial protein of unknown function (DUF951) Thethe_02757 PF00924 Mechanosensitive ion channel Thethe_02759 PF06866 Protein of unknown function (DUF1256) Thethe_02760 PF02875 Mur ligase family, glutamate ligase domain Thethe_02760 PF08245 Mur ligase middle domain Thethe_02760 PF08443 RimK-like ATP-grasp domain Thethe_02761 PF03575 Peptidase family S51 Thethe_02762 PF00781 Diacylglycerol kinase catalytic domain Thethe_02764 PF00266 Aminotransferase class-V Thethe_02765 PF06968 Biotin and Thiamin Synthesis associated domain Thethe_02765 PF04055 Radical SAM superfamily Thethe_02766 PF17762 HTH domain found in ParB protein Thethe_02766 PF02195 ParB-like nuclease domain Thethe_02767 PF13614 AAA domain Thethe_02769 PF00293 NUDIX domain Thethe_02770 PF02527 rRNA small subunit methyltransferase G Thethe_02771 PF01134 Glucose inhibited division protein A Thethe_02771 PF13932 GidA associated domain Thethe_02772 PF12631 MnmE helical domain Thethe_02772 PF10396 GTP-binding protein TrmE N-terminus Thethe_02772 PF01926 50S ribosome-binding GTPase Thethe_02773 PF01424 R3H domain Thethe_02773 PF14804 Jag N-terminus Thethe_02774 PF02096 60Kd inner membrane protein Thethe_02775 PF01809 Putative membrane protein insertion efficiency factor Thethe_02776 PF00825 Ribonuclease P Thethe_02777 PF00468 Ribosomal protein L34 Thethe_02779 PF00271 Helicase conserved C-terminal domain Thethe_02779 PF08148 DSHCT (NUC185) domain Thethe_02779 PF00270 DEAD/DEAH box helicase Thethe_02783 PF05154 TM2 domain Thethe_02793 PF00575 S1 RNA binding domain Thethe_02817 PF00437 Type II/IV secretion system protein Thethe_02827 PF00692 dUTPase Thethe_02832 PF09397 Ftsk gamma domain Thethe_02832 PF17854 FtsK alpha domain Thethe_02832 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thethe_02832 PF01580 FtsK/SpoIIIE family Thethe_02837 PF00216 Bacterial DNA-binding protein Thethe_02845 PF00436 Single-strand binding protein family Thethe_02847 PF00712 DNA polymerase III beta subunit, N-terminal domain Thethe_02847 PF02767 DNA polymerase III beta subunit, central domain Thethe_02847 PF02768 DNA polymerase III beta subunit, C-terminal domain Thethe_02851 PF03747 ADP-ribosylglycohydrolase Thethe_02855 PF01051 Initiator Replication protein Thethe_02857 PF00717 Peptidase S24-like Thethe_02857 PF01726 LexA DNA binding domain Thethe_02864 PF01743 Poly A polymerase head domain Thethe_02864 PF01966 HD domain Thethe_02864 PF12627 Probable RNA and SrmB- binding site of polymerase A Thethe_02888 PF02371 Transposase IS116/IS110/IS902 family Thethe_02888 PF01548 Transposase Thethe_02902 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Thethe_02902 PF14490 Helix-hairpin-helix containing domain Thethe_02902 PF13538 UvrD-like helicase C-terminal domain Thethe_02910 PF00589 Phage integrase family Thethe_02910 PF02899 Phage integrase, N-terminal SAM-like domain Thethe_02918 PF01139 tRNA-splicing ligase RtcB