Thethe_00001 SM00382 ATPases associated with a variety of cellular activities Thethe_00001 SM00760 Bacterial dnaA protein helix-turn-helix domain Thethe_00002 SM00480 DNA polymerase III beta subunit Thethe_00003 SM00363 S4 RNA-binding domain Thethe_00008 SM00387 Histidine kinase-like ATPases Thethe_00008 SM00433 TopoisomeraseII Thethe_00009 SM00434 DNA Topoisomerase IV Thethe_00010 SM00900 Thethe_00010 Thethe_00017 SM01329 Thethe_00017 Thethe_00041 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thethe_00041 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thethe_00041 SM00091 PAS domain Thethe_00041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_00041 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_00042 SM00382 ATPases associated with a variety of cellular activities Thethe_00044 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thethe_00044 SM00493 Thethe_00044 Thethe_00049 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_00062 SM00363 S4 RNA-binding domain Thethe_00064 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_00065 SM00849 Metallo-beta-lactamase superfamily Thethe_00069 SM00986 Uracil DNA glycosylase superfamily Thethe_00069 SM00987 UreE urease accessory protein, C-terminal domain Thethe_00090 SM00966 SpoVT / AbrB like domain Thethe_00101 SM01208 Thethe_00101 Thethe_00102 SM00650 Ribosomal RNA adenine dimethylases Thethe_00109 SM00382 ATPases associated with a variety of cellular activities Thethe_00126 SM00487 DEAD-like helicases superfamily Thethe_00126 SM00490 helicase superfamily c-terminal domain Thethe_00128 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_00129 SM00382 ATPases associated with a variety of cellular activities Thethe_00132 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_00148 SM01130 Thethe_00148 Thethe_00149 SM01321 Thethe_00149 Thethe_00172 SM00354 helix_turn _helix lactose operon repressor Thethe_00177 SM01400 Thethe_00177 Thethe_00178 SM00448 cheY-homologous receiver domain Thethe_00178 SM00862 Transcriptional regulatory protein, C terminal Thethe_00179 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_00179 SM00387 Histidine kinase-like ATPases Thethe_00179 SM00388 His Kinase A (phosphoacceptor) domain Thethe_00180 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_00183 SM00487 DEAD-like helicases superfamily Thethe_00183 SM00490 helicase superfamily c-terminal domain Thethe_00183 SM00982 Thethe_00183 Thethe_00183 SM01058 CarD-like/TRCF domain Thethe_00185 SM00966 SpoVT / AbrB like domain Thethe_00188 SM00257 Lysin motif Thethe_00190 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_00190 SM00895 Thethe_00190 Thethe_00204 SM00354 helix_turn _helix lactose operon repressor Thethe_00209 SM00836 DALR anticodon binding domain Thethe_00209 SM01016 Arginyl tRNA synthetase N terminal dom Thethe_00210 SM00534 ATPase domain of DNA mismatch repair MUTS family Thethe_00221 SM00014 Acid phosphatase homologues Thethe_00229 SM00487 DEAD-like helicases superfamily Thethe_00229 SM00490 helicase superfamily c-terminal domain Thethe_00237 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thethe_00241 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Thethe_00242 SM00851 MGS-like domain Thethe_00242 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thethe_00245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thethe_00246 SM00450 Rhodanese Homology Domain Thethe_00248 SM00529 Helix-turn-helix diphteria tox regulatory element Thethe_00254 SM00028 Tetratricopeptide repeats Thethe_00254 SM00530 Helix-turn-helix XRE-family like proteins Thethe_00256 SM00411 bacterial (prokaryotic) histone like domain Thethe_00257 SM00363 S4 RNA-binding domain Thethe_00261 SM00116 Domain in cystathionine beta-synthase and other proteins. Thethe_00261 SM01131 Thethe_00261 Thethe_00264 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_00271 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thethe_00278 SM00646 Thethe_00278 Thethe_00283 SM00382 ATPases associated with a variety of cellular activities Thethe_00286 SM00890 Domain of unknown function Thethe_00291 SM00382 ATPases associated with a variety of cellular activities Thethe_00304 SM00331 Sigma factor PP2C-like phosphatases Thethe_00306 SM00220 Serine/Threonine protein kinases, catalytic domain Thethe_00307 SM00977 TilS substrate C-terminal domain Thethe_00309 SM00382 ATPases associated with a variety of cellular activities Thethe_00310 SM00342 helix_turn_helix, arabinose operon control protein Thethe_00312 SM00091 PAS domain Thethe_00312 SM00387 Histidine kinase-like ATPases Thethe_00340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thethe_00340 SM00267 diguanylate cyclase Thethe_00343 SM00838 Elongation factor G C-terminus Thethe_00343 SM00889 Elongation factor G, domain IV Thethe_00344 SM00919 Malic enzyme, NAD binding domain Thethe_00344 SM01274 Thethe_00344 Thethe_00349 SM00382 ATPases associated with a variety of cellular activities Thethe_00349 SM01086 C-terminal, D2-small domain, of ClpB protein Thethe_00350 SM00382 ATPases associated with a variety of cellular activities Thethe_00352 SM00670 Large family of predicted nucleotide-binding domains Thethe_00360 SM00840 Thethe_00360 Thethe_00362 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thethe_00369 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thethe_00369 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thethe_00370 SM00649 Ribosomal protein L11/L12 Thethe_00375 SM00663 RNA polymerase I subunit A N-terminus Thethe_00380 SM00838 Elongation factor G C-terminus Thethe_00380 SM00889 Elongation factor G, domain IV Thethe_00382 SM01403 Thethe_00382 Thethe_00386 SM01382 Thethe_00386 Thethe_00386 SM01383 Thethe_00386 Thethe_00389 SM00322 K homology RNA-binding domain Thethe_00393 SM01374 Thethe_00393 Thethe_00394 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thethe_00407 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_00411 SM00363 S4 RNA-binding domain Thethe_00411 SM01390 Thethe_00411 Thethe_00412 SM00662 RNA polymerases D Thethe_00414 SM00382 ATPases associated with a variety of cellular activities Thethe_00415 SM00382 ATPases associated with a variety of cellular activities Thethe_00429 SM00354 helix_turn _helix lactose operon repressor Thethe_00436 SM00640 Glycosyl hydrolases family 32 Thethe_00451 SM00420 helix_turn_helix, Deoxyribose operon repressor Thethe_00451 SM01134 Thethe_00451 Thethe_00465 SM00382 ATPases associated with a variety of cellular activities Thethe_00475 SM00257 Lysin motif Thethe_00476 SM00646 Thethe_00476 Thethe_00477 SM00382 ATPases associated with a variety of cellular activities Thethe_00479 SM00460 Transglutaminase/protease-like homologues Thethe_00488 SM00563 Phosphate acyltransferases Thethe_00492 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thethe_00496 SM00487 DEAD-like helicases superfamily Thethe_00496 SM00490 helicase superfamily c-terminal domain Thethe_00518 SM00257 Lysin motif Thethe_00524 SM00382 ATPases associated with a variety of cellular activities Thethe_00528 SM01005 Alanine racemase, C-terminal domain Thethe_00549 SM01068 Putative carbohydrate binding domain Thethe_00550 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_00553 SM00244 prohibitin homologues Thethe_00574 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thethe_00578 SM01207 Thethe_00578 Thethe_00579 SM00226 Low molecular weight phosphatase family Thethe_00580 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thethe_00587 SM00091 PAS domain Thethe_00587 SM00382 ATPases associated with a variety of cellular activities Thethe_00589 SM01120 Thethe_00589 Thethe_00591 SM00849 Metallo-beta-lactamase superfamily Thethe_00597 SM00382 ATPases associated with a variety of cellular activities Thethe_00599 SM00842 Cell division protein FtsA Thethe_00604 SM00382 ATPases associated with a variety of cellular activities Thethe_00610 SM00382 ATPases associated with a variety of cellular activities Thethe_00617 SM00382 ATPases associated with a variety of cellular activities Thethe_00620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_00620 SM00245 tail specific protease Thethe_00621 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_00623 SM00487 DEAD-like helicases superfamily Thethe_00623 SM00490 helicase superfamily c-terminal domain Thethe_00624 SM00382 ATPases associated with a variety of cellular activities Thethe_00625 SM00240 Forkhead associated domain Thethe_00628 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thethe_00628 SM00465 GIY-YIG type nucleases (URI domain) Thethe_00629 SM00382 ATPases associated with a variety of cellular activities Thethe_00631 SM00062 Bacterial periplasmic substrate-binding proteins Thethe_00633 SM01061 CAT RNA binding domain Thethe_00637 SM00481 DNA polymerase alpha chain like domain Thethe_00640 SM00354 helix_turn _helix lactose operon repressor Thethe_00646 SM00382 ATPases associated with a variety of cellular activities Thethe_00653 SM00813 Alpha-L-arabinofuranosidase C-terminus Thethe_00657 SM00813 Alpha-L-arabinofuranosidase C-terminus Thethe_00662 SM01007 Class II Aldolase and Adducin N-terminal domain Thethe_00664 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_00668 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Thethe_00673 SM00419 helix_turn_helix, cAMP Regulatory protein Thethe_00674 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_00675 SM00448 cheY-homologous receiver domain Thethe_00684 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Thethe_00704 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thethe_00704 SM00481 DNA polymerase alpha chain like domain Thethe_00704 SM00483 DNA polymerase X family Thethe_00706 SM00746 metallochaperone-like domain Thethe_00716 SM00746 metallochaperone-like domain Thethe_00721 SM00387 Histidine kinase-like ATPases Thethe_00721 SM00388 His Kinase A (phosphoacceptor) domain Thethe_00722 SM00382 ATPases associated with a variety of cellular activities Thethe_00722 SM00448 cheY-homologous receiver domain Thethe_00729 SM00481 DNA polymerase alpha chain like domain Thethe_00741 SM00642 Alpha-amylase domain Thethe_00745 SM00116 Domain in cystathionine beta-synthase and other proteins. Thethe_00746 SM00481 DNA polymerase alpha chain like domain Thethe_00763 SM00966 SpoVT / AbrB like domain Thethe_00764 SM00670 Large family of predicted nucleotide-binding domains Thethe_00773 SM00488 Thethe_00773 Thethe_00773 SM00491 Thethe_00773 Thethe_00777 SM00363 S4 RNA-binding domain Thethe_00777 SM01390 Thethe_00777 Thethe_00785 SM00900 Thethe_00785 Thethe_00792 SM01018 B12 binding domain Thethe_00821 SM00422 helix_turn_helix, mercury resistance Thethe_00825 SM00518 AP endonuclease family 2 Thethe_00829 SM00382 ATPases associated with a variety of cellular activities Thethe_00829 SM00994 ClpX C4-type zinc finger Thethe_00829 SM01086 C-terminal, D2-small domain, of ClpB protein Thethe_00831 SM00382 ATPases associated with a variety of cellular activities Thethe_00831 SM00464 Found in ATP-dependent protease La (LON) Thethe_00839 SM00382 ATPases associated with a variety of cellular activities Thethe_00845 SM00382 ATPases associated with a variety of cellular activities Thethe_00847 SM00028 Tetratricopeptide repeats Thethe_00869 SM00984 UDP binding domain Thethe_00873 SM00487 DEAD-like helicases superfamily Thethe_00873 SM00490 helicase superfamily c-terminal domain Thethe_00878 SM00028 Tetratricopeptide repeats Thethe_00898 SM00382 ATPases associated with a variety of cellular activities Thethe_00907 SM00530 Helix-turn-helix XRE-family like proteins Thethe_00911 SM00382 ATPases associated with a variety of cellular activities Thethe_00913 SM01217 Thethe_00913 Thethe_00915 SM00530 Helix-turn-helix XRE-family like proteins Thethe_00933 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_00933 SM00895 Thethe_00933 Thethe_00938 SM00633 Glycosyl hydrolase family 10 Thethe_00945 SM00342 helix_turn_helix, arabinose operon control protein Thethe_00945 SM00448 cheY-homologous receiver domain Thethe_00946 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_00946 SM00387 Histidine kinase-like ATPases Thethe_00959 SM00382 ATPases associated with a variety of cellular activities Thethe_00969 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Thethe_00969 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Thethe_00980 SM00831 Cation transporter/ATPase, N-terminus Thethe_00982 SM00562 Thethe_00982 Thethe_00986 SM00849 Metallo-beta-lactamase superfamily Thethe_00988 SM00014 Acid phosphatase homologues Thethe_00992 SM01001 AIR carboxylase Thethe_01011 SM01130 Thethe_01011 Thethe_01012 SM00859 Semialdehyde dehydrogenase, NAD binding domain Thethe_01015 SM01230 Thethe_01015 Thethe_01016 SM00448 cheY-homologous receiver domain Thethe_01016 SM01012 Thethe_01016 Thethe_01023 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_01026 SM00636 Thethe_01026 Thethe_01037 SM00636 Thethe_01037 Thethe_01044 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Thethe_01044 SM00475 5'-3' exonuclease Thethe_01044 SM00482 DNA polymerase A domain Thethe_01051 SM00287 Bacterial SH3 domain homologues Thethe_01052 SM00838 Elongation factor G C-terminus Thethe_01059 SM00481 DNA polymerase alpha chain like domain Thethe_01061 SM00387 Histidine kinase-like ATPases Thethe_01063 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thethe_01064 SM00902 Iron hydrogenase small subunit Thethe_01064 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thethe_01076 SM00851 MGS-like domain Thethe_01079 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01081 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_01088 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_01093 SM00936 Penicillin-binding protein 5, C-terminal domain Thethe_01094 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thethe_01113 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_01116 SM00831 Cation transporter/ATPase, N-terminus Thethe_01118 SM00382 ATPases associated with a variety of cellular activities Thethe_01119 SM00347 helix_turn_helix multiple antibiotic resistance protein Thethe_01122 SM00849 Metallo-beta-lactamase superfamily Thethe_01123 SM00849 Metallo-beta-lactamase superfamily Thethe_01129 SM00646 Thethe_01129 Thethe_01133 SM00838 Elongation factor G C-terminus Thethe_01134 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01138 SM00271 DnaJ molecular chaperone homology domain Thethe_01141 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01148 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_01150 SM00014 Acid phosphatase homologues Thethe_01152 SM01133 Thethe_01152 Thethe_01154 SM00165 Ubiquitin associated domain Thethe_01161 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_01161 SM00357 Cold shock protein domain Thethe_01161 SM00955 Thethe_01161 Thethe_01165 SM01230 Thethe_01165 Thethe_01171 SM00363 S4 RNA-binding domain Thethe_01190 SM00052 Putative diguanylate phosphodiesterase Thethe_01190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Thethe_01190 SM00091 PAS domain Thethe_01190 SM00267 diguanylate cyclase Thethe_01200 SM00861 Transketolase, pyrimidine binding domain Thethe_01203 SM00363 S4 RNA-binding domain Thethe_01211 SM00382 ATPases associated with a variety of cellular activities Thethe_01214 SM00530 Helix-turn-helix XRE-family like proteins Thethe_01218 SM00382 ATPases associated with a variety of cellular activities Thethe_01228 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_01230 SM00732 Likely ribonuclease with RNase H fold. Thethe_01233 SM00849 Metallo-beta-lactamase superfamily Thethe_01242 SM00382 ATPases associated with a variety of cellular activities Thethe_01243 SM00382 ATPases associated with a variety of cellular activities Thethe_01256 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thethe_01260 SM00841 Elongation factor P, C-terminal Thethe_01260 SM01185 Thethe_01260 Thethe_01262 SM00382 ATPases associated with a variety of cellular activities Thethe_01279 SM00861 Transketolase, pyrimidine binding domain Thethe_01280 SM00363 S4 RNA-binding domain Thethe_01284 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_01285 SM00448 cheY-homologous receiver domain Thethe_01296 SM00936 Penicillin-binding protein 5, C-terminal domain Thethe_01298 SM00387 Histidine kinase-like ATPases Thethe_01310 SM00936 Penicillin-binding protein 5, C-terminal domain Thethe_01313 SM00363 S4 RNA-binding domain Thethe_01318 SM00257 Lysin motif Thethe_01322 SM00855 Phosphoglycerate mutase family Thethe_01326 SM00563 Phosphate acyltransferases Thethe_01328 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_01330 SM00138 Methyltransferase, chemotaxis proteins Thethe_01331 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01333 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thethe_01333 SM00534 ATPase domain of DNA mismatch repair MUTS family Thethe_01334 SM00853 MutL C terminal dimerisation domain Thethe_01334 SM01340 Thethe_01334 Thethe_01342 SM00382 ATPases associated with a variety of cellular activities Thethe_01344 SM00998 Adenylosuccinate lyase C-terminus Thethe_01346 SM00481 DNA polymerase alpha chain like domain Thethe_01349 SM00322 K homology RNA-binding domain Thethe_01349 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_01354 SM00933 Thethe_01354 Thethe_01356 SM00382 ATPases associated with a variety of cellular activities Thethe_01357 SM00852 Probable molybdopterin binding domain Thethe_01359 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01360 SM00382 ATPases associated with a variety of cellular activities Thethe_01360 SM00843 Thethe_01360 Thethe_01368 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_01368 SM00322 K homology RNA-binding domain Thethe_01369 SM01387 Thethe_01369 Thethe_01370 SM00904 Riboflavin kinase Thethe_01377 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_01379 SM00479 Thethe_01379 Thethe_01379 SM00481 DNA polymerase alpha chain like domain Thethe_01382 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_01396 SM00260 Two component signalling adaptor domain Thethe_01397 SM00073 Histidine Phosphotransfer domain Thethe_01397 SM00260 Two component signalling adaptor domain Thethe_01397 SM00387 Histidine kinase-like ATPases Thethe_01397 SM01231 Thethe_01397 Thethe_01400 SM00382 ATPases associated with a variety of cellular activities Thethe_01400 SM00962 SRP54-type protein, GTPase domain Thethe_01407 SM00448 cheY-homologous receiver domain Thethe_01417 SM00382 ATPases associated with a variety of cellular activities Thethe_01425 SM00382 ATPases associated with a variety of cellular activities Thethe_01425 SM01086 C-terminal, D2-small domain, of ClpB protein Thethe_01427 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Thethe_01427 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Thethe_01427 SM00493 Thethe_01427 Thethe_01432 SM00382 ATPases associated with a variety of cellular activities Thethe_01439 SM00382 ATPases associated with a variety of cellular activities Thethe_01439 SM00962 SRP54-type protein, GTPase domain Thethe_01439 SM00963 SRP54-type protein, helical bundle domain Thethe_01445 SM00421 helix_turn_helix, Lux Regulon Thethe_01447 SM00382 ATPases associated with a variety of cellular activities Thethe_01452 SM00382 ATPases associated with a variety of cellular activities Thethe_01452 SM00962 SRP54-type protein, GTPase domain Thethe_01452 SM00963 SRP54-type protein, helical bundle domain Thethe_01453 SM00968 SMC proteins Flexible Hinge Domain Thethe_01455 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01456 SM00358 Double-stranded RNA binding motif Thethe_01456 SM00535 Ribonuclease III family Thethe_01457 SM00825 Beta-ketoacyl synthase Thethe_01459 SM00822 Thethe_01459 Thethe_01460 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Thethe_01477 SM00487 DEAD-like helicases superfamily Thethe_01477 SM00490 helicase superfamily c-terminal domain Thethe_01478 SM01120 Thethe_01478 Thethe_01478 SM01121 Thethe_01478 Thethe_01483 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Thethe_01486 SM00220 Serine/Threonine protein kinases, catalytic domain Thethe_01486 SM00740 Thethe_01486 Thethe_01487 SM00331 Sigma factor PP2C-like phosphatases Thethe_01487 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Thethe_01494 SM00487 DEAD-like helicases superfamily Thethe_01494 SM00490 helicase superfamily c-terminal domain Thethe_01496 SM01409 Thethe_01496 Thethe_01497 SM00072 Guanylate kinase homologues. Thethe_01507 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Thethe_01511 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Thethe_01517 SM00849 Metallo-beta-lactamase superfamily Thethe_01519 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_01519 SM00954 Region found in RelA / SpoT proteins Thethe_01530 SM01323 Thethe_01530 Thethe_01535 SM00382 ATPases associated with a variety of cellular activities Thethe_01536 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thethe_01539 SM00260 Two component signalling adaptor domain Thethe_01544 SM00881 CoA binding domain Thethe_01558 SM00382 ATPases associated with a variety of cellular activities Thethe_01564 SM00232 JAB/MPN domain Thethe_01568 SM00382 ATPases associated with a variety of cellular activities Thethe_01570 SM00062 Bacterial periplasmic substrate-binding proteins Thethe_01574 SM00382 ATPases associated with a variety of cellular activities Thethe_01579 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01591 SM01004 Delta-aminolevulinic acid dehydratase Thethe_01597 SM00382 ATPases associated with a variety of cellular activities Thethe_01598 SM00382 ATPases associated with a variety of cellular activities Thethe_01604 SM00382 ATPases associated with a variety of cellular activities Thethe_01609 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01611 SM00422 helix_turn_helix, mercury resistance Thethe_01613 SM01211 Thethe_01613 Thethe_01616 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_01616 SM00387 Histidine kinase-like ATPases Thethe_01616 SM00388 His Kinase A (phosphoacceptor) domain Thethe_01617 SM00448 cheY-homologous receiver domain Thethe_01617 SM00862 Transcriptional regulatory protein, C terminal Thethe_01626 SM00257 Lysin motif Thethe_01628 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_01628 SM00387 Histidine kinase-like ATPases Thethe_01628 SM00388 His Kinase A (phosphoacceptor) domain Thethe_01629 SM00448 cheY-homologous receiver domain Thethe_01629 SM00862 Transcriptional regulatory protein, C terminal Thethe_01644 SM00382 ATPases associated with a variety of cellular activities Thethe_01645 SM00062 Bacterial periplasmic substrate-binding proteins Thethe_01649 SM00849 Metallo-beta-lactamase superfamily Thethe_01654 SM00506 Appr-1"-p processing enzyme Thethe_01657 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01660 SM00636 Thethe_01660 Thethe_01661 SM00881 CoA binding domain Thethe_01665 SM00893 Electron transfer flavoprotein domain Thethe_01666 SM00893 Electron transfer flavoprotein domain Thethe_01671 SM00893 Electron transfer flavoprotein domain Thethe_01672 SM00893 Electron transfer flavoprotein domain Thethe_01674 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_01674 SM00895 Thethe_01674 Thethe_01675 SM00530 Helix-turn-helix XRE-family like proteins Thethe_01720 SM00419 helix_turn_helix, cAMP Regulatory protein Thethe_01730 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thethe_01743 SM00382 ATPases associated with a variety of cellular activities Thethe_01751 SM01207 Thethe_01751 Thethe_01759 SM00382 ATPases associated with a variety of cellular activities Thethe_01763 SM00091 PAS domain Thethe_01763 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_01763 SM00387 Histidine kinase-like ATPases Thethe_01763 SM00388 His Kinase A (phosphoacceptor) domain Thethe_01764 SM00448 cheY-homologous receiver domain Thethe_01764 SM00862 Transcriptional regulatory protein, C terminal Thethe_01770 SM00864 Tubulin/FtsZ family, GTPase domain Thethe_01770 SM00865 Tubulin/FtsZ family, C-terminal domain Thethe_01771 SM00842 Cell division protein FtsA Thethe_01782 SM00740 Thethe_01782 Thethe_01790 SM00981 Thethe_01790 Thethe_01793 SM00331 Sigma factor PP2C-like phosphatases Thethe_01804 SM00421 helix_turn_helix, Lux Regulon Thethe_01804 SM00448 cheY-homologous receiver domain Thethe_01805 SM00387 Histidine kinase-like ATPases Thethe_01809 SM00463 Small MutS-related domain Thethe_01809 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Thethe_01809 SM00534 ATPase domain of DNA mismatch repair MUTS family Thethe_01812 SM00873 B3/4 domain Thethe_01812 SM00874 tRNA synthetase B5 domain Thethe_01812 SM00896 Ferredoxin-fold anticodon binding domain Thethe_01814 SM00967 RNA 2'-O ribose methyltransferase substrate binding Thethe_01821 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Thethe_01825 SM00267 diguanylate cyclase Thethe_01825 SM00448 cheY-homologous receiver domain Thethe_01829 SM00938 Nitrogen regulatory protein P-II Thethe_01834 SM01001 AIR carboxylase Thethe_01840 SM00852 Probable molybdopterin binding domain Thethe_01842 SM00346 helix_turn_helix isocitrate lyase regulation Thethe_01849 SM00938 Nitrogen regulatory protein P-II Thethe_01850 SM00938 Nitrogen regulatory protein P-II Thethe_01855 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01867 SM00382 ATPases associated with a variety of cellular activities Thethe_01870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_01870 SM00387 Histidine kinase-like ATPases Thethe_01870 SM00388 His Kinase A (phosphoacceptor) domain Thethe_01871 SM00448 cheY-homologous receiver domain Thethe_01871 SM00862 Transcriptional regulatory protein, C terminal Thethe_01874 SM00382 ATPases associated with a variety of cellular activities Thethe_01877 SM00448 cheY-homologous receiver domain Thethe_01877 SM00850 LytTr DNA-binding domain Thethe_01878 SM00387 Histidine kinase-like ATPases Thethe_01884 SM00487 DEAD-like helicases superfamily Thethe_01884 SM00490 helicase superfamily c-terminal domain Thethe_01894 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Thethe_01918 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Thethe_01922 SM00382 ATPases associated with a variety of cellular activities Thethe_01926 SM00354 helix_turn _helix lactose operon repressor Thethe_01929 SM00642 Alpha-amylase domain Thethe_01931 SM00642 Alpha-amylase domain Thethe_01932 SM00640 Glycosyl hydrolases family 32 Thethe_01942 SM00354 helix_turn _helix lactose operon repressor Thethe_01946 SM00354 helix_turn _helix lactose operon repressor Thethe_01955 SM00831 Cation transporter/ATPase, N-terminus Thethe_01965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_01967 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_01967 SM00387 Histidine kinase-like ATPases Thethe_01967 SM00388 His Kinase A (phosphoacceptor) domain Thethe_01968 SM00448 cheY-homologous receiver domain Thethe_01968 SM00862 Transcriptional regulatory protein, C terminal Thethe_01972 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_01972 SM00876 Biotin and Thiamin Synthesis associated domain Thethe_01988 SM00382 ATPases associated with a variety of cellular activities Thethe_02007 SM00382 ATPases associated with a variety of cellular activities Thethe_02008 SM00357 Cold shock protein domain Thethe_02017 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Thethe_02019 SM00636 Thethe_02019 Thethe_02020 SM00849 Metallo-beta-lactamase superfamily Thethe_02035 SM00400 zinc finger Thethe_02035 SM00493 Thethe_02035 Thethe_02036 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_02039 SM01192 Thethe_02039 Thethe_02039 SM01193 Thethe_02039 Thethe_02043 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thethe_02049 SM01208 Thethe_02049 Thethe_02050 SM00478 endonuclease III Thethe_02050 SM00525 Thethe_02050 Thethe_02057 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_02083 SM00917 LeuA allosteric (dimerisation) domain Thethe_02093 SM00507 HNH nucleases Thethe_02095 SM00028 Tetratricopeptide repeats Thethe_02099 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thethe_02121 SM00877 Thethe_02121 Thethe_02122 SM00877 Thethe_02122 Thethe_02128 SM00877 Thethe_02128 Thethe_02129 SM00877 Thethe_02129 Thethe_02132 SM00342 helix_turn_helix, arabinose operon control protein Thethe_02132 SM00448 cheY-homologous receiver domain Thethe_02138 SM01130 Thethe_02138 Thethe_02140 SM00481 DNA polymerase alpha chain like domain Thethe_02142 SM00861 Transketolase, pyrimidine binding domain Thethe_02144 SM00382 ATPases associated with a variety of cellular activities Thethe_02157 SM00646 Thethe_02157 Thethe_02159 SM00382 ATPases associated with a variety of cellular activities Thethe_02160 SM00382 ATPases associated with a variety of cellular activities Thethe_02165 SM00845 GatB domain Thethe_02168 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Thethe_02168 SM00292 breast cancer carboxy-terminal domain Thethe_02168 SM00532 Ligase N family Thethe_02177 SM00382 ATPases associated with a variety of cellular activities Thethe_02177 SM00930 Thethe_02177 Thethe_02186 SM01209 Thethe_02186 Thethe_02186 SM01210 Thethe_02186 Thethe_02187 SM00798 AICARFT/IMPCHase bienzyme Thethe_02187 SM00851 MGS-like domain Thethe_02192 SM01001 AIR carboxylase Thethe_02195 SM00116 Domain in cystathionine beta-synthase and other proteins. Thethe_02195 SM01240 Thethe_02195 Thethe_02197 SM00883 Chaperonin 10 Kd subunit Thethe_02204 SM00382 ATPases associated with a variety of cellular activities Thethe_02210 SM00382 ATPases associated with a variety of cellular activities Thethe_02211 SM00382 ATPases associated with a variety of cellular activities Thethe_02212 SM00028 Tetratricopeptide repeats Thethe_02212 SM00530 Helix-turn-helix XRE-family like proteins Thethe_02213 SM00382 ATPases associated with a variety of cellular activities Thethe_02221 SM00478 endonuclease III Thethe_02223 SM00387 Histidine kinase-like ATPases Thethe_02224 SM00448 cheY-homologous receiver domain Thethe_02224 SM00850 LytTr DNA-binding domain Thethe_02226 SM00881 CoA binding domain Thethe_02229 SM00382 ATPases associated with a variety of cellular activities Thethe_02241 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_02241 SM00732 Likely ribonuclease with RNase H fold. Thethe_02243 SM00957 SecA DEAD-like domain Thethe_02243 SM00958 SecA preprotein cross-linking domain Thethe_02247 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_02250 SM00382 ATPases associated with a variety of cellular activities Thethe_02252 SM00062 Bacterial periplasmic substrate-binding proteins Thethe_02252 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Thethe_02263 SM00028 Tetratricopeptide repeats Thethe_02274 SM00382 ATPases associated with a variety of cellular activities Thethe_02276 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Thethe_02287 SM00909 Sporulation and spore germination Thethe_02288 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02288 SM00387 Histidine kinase-like ATPases Thethe_02288 SM00388 His Kinase A (phosphoacceptor) domain Thethe_02289 SM00448 cheY-homologous receiver domain Thethe_02289 SM00862 Transcriptional regulatory protein, C terminal Thethe_02291 SM00354 helix_turn _helix lactose operon repressor Thethe_02304 SM00854 Bacterial capsule synthesis protein PGA_cap Thethe_02309 SM01061 CAT RNA binding domain Thethe_02313 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thethe_02314 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Thethe_02317 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_02317 SM00866 Thethe_02317 Thethe_02320 SM00382 ATPases associated with a variety of cellular activities Thethe_02323 SM01221 Thethe_02323 Thethe_02323 SM01222 Thethe_02323 Thethe_02325 SM00890 Domain of unknown function Thethe_02326 SM01329 Thethe_02326 Thethe_02329 SM00900 Thethe_02329 Thethe_02332 SM00271 DnaJ molecular chaperone homology domain Thethe_02345 SM00382 ATPases associated with a variety of cellular activities Thethe_02359 SM00382 ATPases associated with a variety of cellular activities Thethe_02364 SM00382 ATPases associated with a variety of cellular activities Thethe_02368 SM00382 ATPases associated with a variety of cellular activities Thethe_02371 SM00421 helix_turn_helix, Lux Regulon Thethe_02376 SM00981 Thethe_02376 Thethe_02379 SM00344 helix_turn_helix ASNC type Thethe_02383 SM00899 Thethe_02383 Thethe_02384 SM00014 Acid phosphatase homologues Thethe_02387 SM00382 ATPases associated with a variety of cellular activities Thethe_02396 SM00287 Bacterial SH3 domain homologues Thethe_02396 SM00854 Bacterial capsule synthesis protein PGA_cap Thethe_02405 SM00382 ATPases associated with a variety of cellular activities Thethe_02411 SM00382 ATPases associated with a variety of cellular activities Thethe_02426 SM00382 ATPases associated with a variety of cellular activities Thethe_02429 SM00342 helix_turn_helix, arabinose operon control protein Thethe_02429 SM00448 cheY-homologous receiver domain Thethe_02430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02436 SM00354 helix_turn _helix lactose operon repressor Thethe_02438 SM01350 Thethe_02438 Thethe_02442 SM00420 helix_turn_helix, Deoxyribose operon repressor Thethe_02442 SM01134 Thethe_02442 Thethe_02445 SM00858 Thethe_02445 Thethe_02448 SM00710 Parallel beta-helix repeats Thethe_02453 SM00354 helix_turn _helix lactose operon repressor Thethe_02455 SM00257 Lysin motif Thethe_02472 SM00244 prohibitin homologues Thethe_02485 SM00382 ATPases associated with a variety of cellular activities Thethe_02492 SM00849 Metallo-beta-lactamase superfamily Thethe_02492 SM01027 Beta-Casp domain Thethe_02501 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Thethe_02509 SM00382 ATPases associated with a variety of cellular activities Thethe_02517 SM00382 ATPases associated with a variety of cellular activities Thethe_02525 SM00861 Transketolase, pyrimidine binding domain Thethe_02533 SM00354 helix_turn _helix lactose operon repressor Thethe_02534 SM00849 Metallo-beta-lactamase superfamily Thethe_02534 SM01027 Beta-Casp domain Thethe_02550 SM00028 Tetratricopeptide repeats Thethe_02551 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thethe_02551 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02557 SM00382 ATPases associated with a variety of cellular activities Thethe_02558 SM00382 ATPases associated with a variety of cellular activities Thethe_02568 SM00060 Fibronectin type 3 domain Thethe_02568 SM00429 ig-like, plexins, transcription factors Thethe_02583 SM00226 Low molecular weight phosphatase family Thethe_02586 SM00937 Thethe_02586 Thethe_02591 SM00357 Cold shock protein domain Thethe_02591 SM00382 ATPases associated with a variety of cellular activities Thethe_02591 SM00959 Rho termination factor, N-terminal domain Thethe_02594 SM00448 cheY-homologous receiver domain Thethe_02595 SM00646 Thethe_02595 Thethe_02599 SM00382 ATPases associated with a variety of cellular activities Thethe_02601 SM00382 ATPases associated with a variety of cellular activities Thethe_02602 SM00382 ATPases associated with a variety of cellular activities Thethe_02608 SM00420 helix_turn_helix, Deoxyribose operon repressor Thethe_02608 SM01134 Thethe_02608 Thethe_02620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02620 SM00387 Histidine kinase-like ATPases Thethe_02620 SM00388 His Kinase A (phosphoacceptor) domain Thethe_02621 SM00448 cheY-homologous receiver domain Thethe_02621 SM00862 Transcriptional regulatory protein, C terminal Thethe_02630 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Thethe_02637 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_02637 SM00245 tail specific protease Thethe_02643 SM00849 Metallo-beta-lactamase superfamily Thethe_02646 SM00382 ATPases associated with a variety of cellular activities Thethe_02647 SM00382 ATPases associated with a variety of cellular activities Thethe_02648 SM00347 helix_turn_helix multiple antibiotic resistance protein Thethe_02651 SM00345 helix_turn_helix gluconate operon transcriptional repressor Thethe_02652 SM00116 Domain in cystathionine beta-synthase and other proteins. Thethe_02652 SM00382 ATPases associated with a variety of cellular activities Thethe_02660 SM00487 DEAD-like helicases superfamily Thethe_02679 SM00382 ATPases associated with a variety of cellular activities Thethe_02680 SM00883 Chaperonin 10 Kd subunit Thethe_02700 SM00421 helix_turn_helix, Lux Regulon Thethe_02707 SM00530 Helix-turn-helix XRE-family like proteins Thethe_02711 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Thethe_02716 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02716 SM00387 Histidine kinase-like ATPases Thethe_02716 SM00388 His Kinase A (phosphoacceptor) domain Thethe_02717 SM00448 cheY-homologous receiver domain Thethe_02717 SM00862 Transcriptional regulatory protein, C terminal Thethe_02719 SM00257 Lysin motif Thethe_02719 SM01208 Thethe_02719 Thethe_02721 SM00382 ATPases associated with a variety of cellular activities Thethe_02736 SM00788 Adenylosuccinate synthetase Thethe_02740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thethe_02740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02742 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Thethe_02742 SM00387 Histidine kinase-like ATPases Thethe_02742 SM00388 His Kinase A (phosphoacceptor) domain Thethe_02743 SM00448 cheY-homologous receiver domain Thethe_02743 SM00862 Transcriptional regulatory protein, C terminal Thethe_02745 SM00116 Domain in cystathionine beta-synthase and other proteins. Thethe_02745 SM00924 MgtE intracellular N domain Thethe_02747 SM00100 Cyclic nucleotide-monophosphate binding domain Thethe_02747 SM00419 helix_turn_helix, cAMP Regulatory protein Thethe_02748 SM00382 ATPases associated with a variety of cellular activities Thethe_02762 SM00046 Diacylglycerol kinase catalytic domain (presumed) Thethe_02765 SM00729 Elongator protein 3, MiaB family, Radical SAM Thethe_02765 SM00876 Biotin and Thiamin Synthesis associated domain Thethe_02766 SM00470 ParB-like nuclease domain Thethe_02768 SM00470 ParB-like nuclease domain Thethe_02771 SM01228 Thethe_02771 Thethe_02773 SM00393 Putative single-stranded nucleic acids-binding domain Thethe_02773 SM01245 Thethe_02773 Thethe_02775 SM01234 Thethe_02775 Thethe_02779 SM00487 DEAD-like helicases superfamily Thethe_02779 SM00490 helicase superfamily c-terminal domain Thethe_02793 SM00316 Ribosomal protein S1-like RNA-binding domain Thethe_02803 SM00858 Thethe_02803 Thethe_02804 SM00564 beta-propeller repeat Thethe_02820 SM00858 Thethe_02820 Thethe_02826 SM00507 HNH nucleases Thethe_02837 SM00411 bacterial (prokaryotic) histone like domain Thethe_02847 SM00480 DNA polymerase III beta subunit Thethe_02860 SM00490 helicase superfamily c-terminal domain Thethe_02880 SM00487 DEAD-like helicases superfamily Thethe_02902 SM00382 ATPases associated with a variety of cellular activities