locus-tag class description Thert_00002 PF00589 Phage integrase family Thert_00005 PF01966 HD domain Thert_00005 PF11871 Domain of unknown function (DUF3391) Thert_00006 PF00990 Diguanylate cyclase, GGDEF domain Thert_00006 PF03707 Bacterial signalling protein N terminal repeat Thert_00006 PF00563 EAL domain Thert_00007 PF00072 Response regulator receiver domain Thert_00011 PF00578 AhpC/TSA family Thert_00012 PF00290 Tryptophan synthase alpha chain Thert_00013 PF00291 Pyridoxal-phosphate dependent enzyme Thert_00014 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thert_00015 PF00218 Indole-3-glycerol phosphate synthase Thert_00016 PF00591 Glycosyl transferase family, a/b domain Thert_00016 PF02885 Glycosyl transferase family, helical bundle domain Thert_00017 PF00591 Glycosyl transferase family, a/b domain Thert_00017 PF02885 Glycosyl transferase family, helical bundle domain Thert_00017 PF00117 Glutamine amidotransferase class-I Thert_00019 PF01910 Thiamine-binding protein Thert_00020 PF01048 Phosphorylase superfamily Thert_00022 PF08264 Anticodon-binding domain of tRNA Thert_00022 PF00133 tRNA synthetases class I (I, L, M and V) Thert_00022 PF06827 Zinc finger found in FPG and IleRS Thert_00024 PF05103 DivIVA protein Thert_00025 PF17774 Putative RNA-binding domain in YlmH Thert_00025 PF01479 S4 domain Thert_00027 PF04472 Cell division protein SepF Thert_00028 PF01168 Alanine racemase, N-terminal domain Thert_00030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thert_00031 PF18318 Glutamine synthetase C-terminal domain Thert_00031 PF12437 Glutamine synthetase type III N terminal Thert_00031 PF00120 Glutamine synthetase, catalytic domain Thert_00032 PF01668 SmpB protein Thert_00033 PF17876 Cold shock domain Thert_00033 PF00575 S1 RNA binding domain Thert_00033 PF00773 RNB domain Thert_00033 PF08206 Ribonuclease B OB domain Thert_00040 PF00391 PEP-utilising enzyme, mobile domain Thert_00040 PF02896 PEP-utilising enzyme, TIM barrel domain Thert_00040 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thert_00041 PF03618 Kinase/pyrophosphorylase Thert_00042 PF03129 Anticodon binding domain Thert_00042 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thert_00044 PF02565 Recombination protein O C terminal Thert_00044 PF11967 Recombination protein O N terminal Thert_00045 PF01791 DeoC/LacD family aldolase Thert_00046 PF01926 50S ribosome-binding GTPase Thert_00046 PF07650 KH domain Thert_00048 PF01219 Prokaryotic diacylglycerol kinase Thert_00049 PF02130 Uncharacterized protein family UPF0054 Thert_00050 PF01966 HD domain Thert_00050 PF07697 7TM-HD extracellular Thert_00050 PF07698 7TM receptor with intracellular HD hydrolase Thert_00051 PF02562 PhoH-like protein Thert_00054 PF07873 YabP family Thert_00055 PF09424 Yqey-like protein Thert_00056 PF01165 Ribosomal protein S21 Thert_00057 PF01230 HIT domain Thert_00058 PF04055 Radical SAM superfamily Thert_00058 PF01938 TRAM domain Thert_00058 PF00919 Uncharacterized protein family UPF0004 Thert_00059 PF04452 RNA methyltransferase Thert_00061 PF00226 DnaJ domain Thert_00061 PF01556 DnaJ C terminal domain Thert_00061 PF00684 DnaJ central domain Thert_00062 PF00012 Hsp70 protein Thert_00064 PF01025 GrpE Thert_00065 PF01628 HrcA protein C terminal domain Thert_00066 PF04055 Radical SAM superfamily Thert_00066 PF06969 HemN C-terminal domain Thert_00067 PF06421 GTP-binding protein LepA C-terminus Thert_00067 PF03144 Elongation factor Tu domain 2 Thert_00067 PF00009 Elongation factor Tu GTP binding domain Thert_00067 PF14492 Elongation Factor G, domain II Thert_00067 PF00679 Elongation factor G C-terminus Thert_00069 PF13477 Glycosyl transferase 4-like Thert_00069 PF00534 Glycosyl transferases group 1 Thert_00072 PF08239 Bacterial SH3 domain Thert_00072 PF01520 N-acetylmuramoyl-L-alanine amidase Thert_00074 PF03418 Germination protease Thert_00076 PF01649 Ribosomal protein S20 Thert_00079 PF03772 Competence protein Thert_00079 PF00753 Metallo-beta-lactamase superfamily Thert_00079 PF13567 Domain of unknown function (DUF4131) Thert_00080 PF00753 Metallo-beta-lactamase superfamily Thert_00084 PF00005 ABC transporter Thert_00088 PF00689 Cation transporting ATPase, C-terminus Thert_00088 PF00690 Cation transporter/ATPase, N-terminus Thert_00091 PF01411 tRNA synthetases class II (A) Thert_00091 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thert_00091 PF02272 DHHA1 domain Thert_00092 PF01063 Amino-transferase class IV Thert_00094 PF12838 4Fe-4S dicluster domain Thert_00096 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_00096 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thert_00097 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thert_00097 PF00175 Oxidoreductase NAD-binding domain Thert_00098 PF00465 Iron-containing alcohol dehydrogenase Thert_00103 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thert_00104 PF04608 Phosphatidylglycerophosphatase A Thert_00105 PF01625 Peptide methionine sulfoxide reductase Thert_00107 PF10531 SLBB domain Thert_00109 PF07943 Penicillin-binding protein 5, C-terminal domain Thert_00109 PF00768 D-alanyl-D-alanine carboxypeptidase Thert_00110 PF04015 Domain of unknown function (DUF362) Thert_00111 PF13309 HTH domain Thert_00111 PF08348 YheO-like PAS domain Thert_00113 PF01966 HD domain Thert_00114 PF01467 Cytidylyltransferase-like Thert_00115 PF09269 Domain of unknown function (DUF1967) Thert_00115 PF01926 50S ribosome-binding GTPase Thert_00115 PF01018 GTP1/OBG Thert_00117 PF01016 Ribosomal L27 protein Thert_00119 PF00829 Ribosomal prokaryotic L21 protein Thert_00120 PF00575 S1 RNA binding domain Thert_00120 PF10150 Ribonuclease E/G family Thert_00123 PF00571 CBS domain Thert_00123 PF02163 Peptidase family M50 Thert_00124 PF01551 Peptidase family M23 Thert_00124 PF01476 LysM domain Thert_00125 PF02142 MGS-like domain Thert_00126 PF01098 Cell cycle protein Thert_00127 PF03776 Septum formation topological specificity factor MinE Thert_00128 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thert_00129 PF03775 Septum formation inhibitor MinC, C-terminal domain Thert_00130 PF03717 Penicillin-binding Protein dimerisation domain Thert_00130 PF00905 Penicillin binding protein transpeptidase domain Thert_00134 PF04002 RadC-like JAB domain Thert_00135 PF02545 Maf-like protein Thert_00137 PF02906 Iron only hydrogenase large subunit, C-terminal domain Thert_00137 PF02256 Iron hydrogenase small subunit Thert_00137 PF00037 4Fe-4S binding domain Thert_00137 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Thert_00138 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Thert_00138 PF00037 4Fe-4S binding domain Thert_00138 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thert_00140 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Thert_00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00140 PF17203 Single cache domain 3 Thert_00145 PF04060 Putative Fe-S cluster Thert_00146 PF13581 Histidine kinase-like ATPase domain Thert_00149 PF01464 Transglycosylase SLT domain Thert_00151 PF00877 NlpC/P60 family Thert_00156 PF04284 Protein of unknown function (DUF441) Thert_00157 PF01464 Transglycosylase SLT domain Thert_00158 PF01121 Dephospho-CoA kinase Thert_00159 PF00476 DNA polymerase family A Thert_00159 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Thert_00159 PF01367 5'-3' exonuclease, C-terminal SAM fold Thert_00161 PF08281 Sigma-70, region 4 Thert_00161 PF04542 Sigma-70 region 2 Thert_00163 PF01476 LysM domain Thert_00163 PF03734 L,D-transpeptidase catalytic domain Thert_00168 PF00324 Amino acid permease Thert_00170 PF04024 PspC domain Thert_00172 PF00704 Glycosyl hydrolases family 18 Thert_00172 PF01476 LysM domain Thert_00175 PF00403 Heavy-metal-associated domain Thert_00176 PF00403 Heavy-metal-associated domain Thert_00177 PF00027 Cyclic nucleotide-binding domain Thert_00177 PF13545 Crp-like helix-turn-helix domain Thert_00178 PF04260 Protein of unknown function (DUF436) Thert_00179 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Thert_00179 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Thert_00184 PF00188 Cysteine-rich secretory protein family Thert_00186 PF02127 Aminopeptidase I zinc metalloprotease (M18) Thert_00187 PF00196 Bacterial regulatory proteins, luxR family Thert_00187 PF00072 Response regulator receiver domain Thert_00188 PF07730 Histidine kinase Thert_00188 PF05384 Sensor protein DegS Thert_00188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00190 PF00488 MutS domain V Thert_00190 PF01713 Smr domain Thert_00192 PF01136 Peptidase family U32 Thert_00192 PF12392 Collagenase Thert_00195 PF03484 tRNA synthetase B5 domain Thert_00195 PF03483 B3/4 domain Thert_00195 PF03147 Ferredoxin-fold anticodon binding domain Thert_00195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Thert_00195 PF01588 Putative tRNA binding domain Thert_00196 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Thert_00196 PF01409 tRNA synthetases class II core domain (F) Thert_00197 PF00588 SpoU rRNA Methylase family Thert_00197 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thert_00198 PF00453 Ribosomal protein L20 Thert_00199 PF01632 Ribosomal protein L35 Thert_00200 PF05198 Translation initiation factor IF-3, N-terminal domain Thert_00200 PF00707 Translation initiation factor IF-3, C-terminal domain Thert_00201 PF01264 Chorismate synthase Thert_00204 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thert_00204 PF03129 Anticodon binding domain Thert_00204 PF02824 TGS domain Thert_00204 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thert_00205 PF04286 Protein of unknown function (DUF445) Thert_00208 PF00486 Transcriptional regulatory protein, C terminal Thert_00208 PF00072 Response regulator receiver domain Thert_00210 PF00232 Glycosyl hydrolase family 1 Thert_00212 PF00733 Asparagine synthase Thert_00212 PF13537 Glutamine amidotransferase domain Thert_00213 PF00543 Nitrogen regulatory protein P-II Thert_00214 PF00909 Ammonium Transporter Family Thert_00220 PF00909 Ammonium Transporter Family Thert_00223 PF00148 Nitrogenase component 1 type Oxidoreductase Thert_00224 PF00148 Nitrogenase component 1 type Oxidoreductase Thert_00225 PF00543 Nitrogen regulatory protein P-II Thert_00226 PF00543 Nitrogen regulatory protein P-II Thert_00228 PF00148 Nitrogenase component 1 type Oxidoreductase Thert_00230 PF00148 Nitrogenase component 1 type Oxidoreductase Thert_00231 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thert_00235 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thert_00236 PF04055 Radical SAM superfamily Thert_00236 PF02579 Dinitrogenase iron-molybdenum cofactor Thert_00237 PF04055 Radical SAM superfamily Thert_00237 PF02579 Dinitrogenase iron-molybdenum cofactor Thert_00241 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00244 PF02581 Thiamine monophosphate synthase Thert_00245 PF02110 Hydroxyethylthiazole kinase family Thert_00247 PF02581 Thiamine monophosphate synthase Thert_00247 PF08543 Phosphomethylpyrimidine kinase Thert_00250 PF00005 ABC transporter Thert_00250 PF00664 ABC transporter transmembrane region Thert_00251 PF03069 Acetamidase/Formamidase family Thert_00253 PF00892 EamA-like transporter family Thert_00254 PF13426 PAS domain Thert_00254 PF00512 His Kinase A (phospho-acceptor) domain Thert_00254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00254 PF00672 HAMP domain Thert_00255 PF00486 Transcriptional regulatory protein, C terminal Thert_00255 PF00072 Response regulator receiver domain Thert_00258 PF00005 ABC transporter Thert_00260 PF02554 Carbon starvation protein CstA Thert_00260 PF13722 5TM C-terminal transporter carbon starvation CstA Thert_00261 PF00072 Response regulator receiver domain Thert_00261 PF04397 LytTr DNA-binding domain Thert_00262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00262 PF07694 5TMR of 5TMR-LYT Thert_00262 PF06580 Histidine kinase Thert_00273 PF13538 UvrD-like helicase C-terminal domain Thert_00275 PF08378 Nuclease-related domain Thert_00278 PF13302 Acetyltransferase (GNAT) domain Thert_00279 PF03845 Spore germination protein Thert_00286 PF00294 pfkB family carbohydrate kinase Thert_00287 PF07555 beta-N-acetylglucosaminidase Thert_00287 PF02838 Glycosyl hydrolase family 20, domain 2 Thert_00290 PF01134 Glucose inhibited division protein A Thert_00290 PF13932 GidA associated domain Thert_00293 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00294 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00295 PF01547 Bacterial extracellular solute-binding protein Thert_00296 PF00480 ROK family Thert_00297 PF01418 Helix-turn-helix domain, rpiR family Thert_00297 PF01380 SIS domain Thert_00298 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Thert_00300 PF01116 Fructose-bisphosphate aldolase class-II Thert_00301 PF00107 Zinc-binding dehydrogenase Thert_00301 PF08240 Alcohol dehydrogenase GroES-like domain Thert_00302 PF08013 Tagatose 6 phosphate kinase Thert_00303 PF03611 PTS system sugar-specific permease component Thert_00304 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_00306 PF03610 PTS system fructose IIA component Thert_00306 PF00874 PRD domain Thert_00306 PF00158 Sigma-54 interaction domain Thert_00307 PF08125 Mannitol dehydrogenase C-terminal domain Thert_00307 PF01232 Mannitol dehydrogenase Rossmann domain Thert_00308 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_00309 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_00309 PF05043 Mga helix-turn-helix domain Thert_00309 PF00874 PRD domain Thert_00309 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_00309 PF08279 HTH domain Thert_00311 PF02378 Phosphotransferase system, EIIC Thert_00311 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_00312 PF00892 EamA-like transporter family Thert_00314 PF00356 Bacterial regulatory proteins, lacI family Thert_00318 PF00128 Alpha amylase, catalytic domain Thert_00319 PF00294 pfkB family carbohydrate kinase Thert_00320 PF00294 pfkB family carbohydrate kinase Thert_00323 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thert_00324 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thert_00325 PF08532 Beta-galactosidase trimerisation domain Thert_00325 PF02449 Beta-galactosidase Thert_00325 PF08533 Beta-galactosidase C-terminal domain Thert_00326 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00327 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00329 PF00356 Bacterial regulatory proteins, lacI family Thert_00330 PF04041 beta-1,4-mannooligosaccharide phosphorylase Thert_00333 PF00356 Bacterial regulatory proteins, lacI family Thert_00338 PF03030 Inorganic H+ pyrophosphatase Thert_00339 PF02254 TrkA-N domain Thert_00339 PF02080 TrkA-C domain Thert_00341 PF02254 TrkA-N domain Thert_00341 PF02080 TrkA-C domain Thert_00342 PF00689 Cation transporting ATPase, C-terminus Thert_00342 PF00690 Cation transporter/ATPase, N-terminus Thert_00343 PF00689 Cation transporting ATPase, C-terminus Thert_00343 PF00690 Cation transporter/ATPase, N-terminus Thert_00348 PF01571 Aminomethyltransferase folate-binding domain Thert_00348 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thert_00349 PF01597 Glycine cleavage H-protein Thert_00350 PF02347 Glycine cleavage system P-protein Thert_00351 PF02347 Glycine cleavage system P-protein Thert_00354 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_00354 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thert_00355 PF10437 Bacterial lipoate protein ligase C-terminus Thert_00355 PF03099 Biotin/lipoate A/B protein ligase family Thert_00356 PF13180 PDZ domain Thert_00358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00358 PF00989 PAS fold Thert_00358 PF16736 Single Cache-like Thert_00358 PF00512 His Kinase A (phospho-acceptor) domain Thert_00359 PF00072 Response regulator receiver domain Thert_00359 PF00486 Transcriptional regulatory protein, C terminal Thert_00366 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thert_00366 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thert_00370 PF16736 Single Cache-like Thert_00370 PF00989 PAS fold Thert_00370 PF00512 His Kinase A (phospho-acceptor) domain Thert_00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00372 PF00733 Asparagine synthase Thert_00372 PF13537 Glutamine amidotransferase domain Thert_00372 PF00733 Asparagine synthase Thert_00372 PF13537 Glutamine amidotransferase domain Thert_00373 PF02585 GlcNAc-PI de-N-acetylase Thert_00378 PF03023 Lipid II flippase MurJ Thert_00381 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_00381 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_00382 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_00382 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_00384 PF03649 Uncharacterised protein family (UPF0014) Thert_00385 PF00005 ABC transporter Thert_00386 PF04055 Radical SAM superfamily Thert_00387 PF01380 SIS domain Thert_00388 PF00294 pfkB family carbohydrate kinase Thert_00389 PF01116 Fructose-bisphosphate aldolase class-II Thert_00390 PF13419 Haloacid dehalogenase-like hydrolase Thert_00392 PF01979 Amidohydrolase family Thert_00393 PF13580 SIS domain Thert_00398 PF03613 PTS system mannose/fructose/sorbose family IID component Thert_00399 PF03609 PTS system sorbose-specific iic component Thert_00400 PF03830 PTS system sorbose subfamily IIB component Thert_00401 PF03610 PTS system fructose IIA component Thert_00401 PF00874 PRD domain Thert_00401 PF00158 Sigma-54 interaction domain Thert_00402 PF00313 'Cold-shock' DNA-binding domain Thert_00403 PF02146 Sir2 family Thert_00406 PF01106 NifU-like domain Thert_00408 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thert_00411 PF04011 LemA family Thert_00412 PF13185 GAF domain Thert_00413 PF01790 Prolipoprotein diacylglyceryl transferase Thert_00415 PF03772 Competence protein Thert_00415 PF00753 Metallo-beta-lactamase superfamily Thert_00417 PF13472 GDSL-like Lipase/Acylhydrolase family Thert_00418 PF01238 Phosphomannose isomerase type I Thert_00420 PF01048 Phosphorylase superfamily Thert_00422 PF01784 NIF3 (NGG1p interacting factor 3) Thert_00423 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Thert_00424 PF03979 Sigma-70 factor, region 1.1 Thert_00424 PF00140 Sigma-70 factor, region 1.2 Thert_00424 PF04542 Sigma-70 region 2 Thert_00424 PF04545 Sigma-70, region 4 Thert_00424 PF04539 Sigma-70 region 3 Thert_00425 PF08275 DNA primase catalytic core, N-terminal domain Thert_00425 PF01807 CHC2 zinc finger Thert_00425 PF10410 DnaB-helicase binding domain of primase Thert_00426 PF13286 Phosphohydrolase-associated domain Thert_00426 PF01966 HD domain Thert_00427 PF03840 Preprotein translocase SecG subunit Thert_00428 PF02001 Protein of unknown function DUF134 Thert_00429 PF00113 Enolase, C-terminal TIM barrel domain Thert_00429 PF03952 Enolase, N-terminal domain Thert_00431 PF00121 Triosephosphate isomerase Thert_00432 PF00162 Phosphoglycerate kinase Thert_00434 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Thert_00434 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thert_00436 PF04198 Putative sugar-binding domain Thert_00437 PF04552 Sigma-54, DNA binding domain Thert_00437 PF04963 Sigma-54 factor, core binding domain Thert_00437 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thert_00438 PF04963 Sigma-54 factor, core binding domain Thert_00438 PF04552 Sigma-54, DNA binding domain Thert_00438 PF00309 Sigma-54 factor, Activator interacting domain (AID) Thert_00439 PF00708 Acylphosphatase Thert_00441 PF01475 Ferric uptake regulator family Thert_00442 PF04294 VanW like protein Thert_00443 PF00730 HhH-GPD superfamily base excision DNA repair protein Thert_00443 PF00633 Helix-hairpin-helix motif Thert_00443 PF10576 Iron-sulfur binding domain of endonuclease III Thert_00444 PF08331 Domain of unknown function (DUF1730) Thert_00445 PF13654 AAA domain Thert_00445 PF05362 Lon protease (S16) C-terminal proteolytic domain Thert_00450 PF04055 Radical SAM superfamily Thert_00450 PF13186 Iron-sulfur cluster-binding domain Thert_00451 PF03129 Anticodon binding domain Thert_00451 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thert_00451 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thert_00451 PF02824 TGS domain Thert_00452 PF02915 Rubrerythrin Thert_00481 PF00849 RNA pseudouridylate synthase Thert_00484 PF02073 Thermophilic metalloprotease (M29) Thert_00485 PF00580 UvrD/REP helicase N-terminal domain Thert_00485 PF12705 PD-(D/E)XK nuclease superfamily Thert_00485 PF13361 UvrD-like helicase C-terminal domain Thert_00486 PF12705 PD-(D/E)XK nuclease superfamily Thert_00489 PF08502 LeuA allosteric (dimerisation) domain Thert_00489 PF00682 HMGL-like Thert_00491 PF01070 FMN-dependent dehydrogenase Thert_00492 PF00881 Nitroreductase family Thert_00495 PF14489 QueF-like protein Thert_00499 PF00483 Nucleotidyl transferase Thert_00502 PF00440 Bacterial regulatory proteins, tetR family Thert_00502 PF17934 Tetracyclin repressor-like, C-terminal domain Thert_00506 PF00535 Glycosyl transferase family 2 Thert_00506 PF13181 Tetratricopeptide repeat Thert_00508 PF04073 Aminoacyl-tRNA editing domain Thert_00511 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thert_00517 PF01734 Patatin-like phospholipase Thert_00518 PF01553 Acyltransferase Thert_00519 PF13977 BetI-type transcriptional repressor, C-terminal Thert_00519 PF00440 Bacterial regulatory proteins, tetR family Thert_00520 PF12850 Calcineurin-like phosphoesterase superfamily domain Thert_00521 PF01725 Ham1 family Thert_00522 PF01138 3' exoribonuclease family, domain 1 Thert_00522 PF03725 3' exoribonuclease family, domain 2 Thert_00524 PF05036 Sporulation related domain Thert_00524 PF01520 N-acetylmuramoyl-L-alanine amidase Thert_00527 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thert_00527 PF00005 ABC transporter Thert_00528 PF00005 ABC transporter Thert_00528 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thert_00529 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00529 PF12911 N-terminal TM domain of oligopeptide transport permease C Thert_00531 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00532 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thert_00533 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thert_00535 PF02637 GatB domain Thert_00535 PF02934 GatB/GatE catalytic domain Thert_00536 PF01425 Amidase Thert_00537 PF02686 Glu-tRNAGln amidotransferase C subunit Thert_00539 PF01653 NAD-dependent DNA ligase adenylation domain Thert_00539 PF03120 NAD-dependent DNA ligase OB-fold domain Thert_00539 PF00533 BRCA1 C Terminus (BRCT) domain Thert_00539 PF12826 Helix-hairpin-helix motif Thert_00539 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Thert_00540 PF13361 UvrD-like helicase C-terminal domain Thert_00540 PF00580 UvrD/REP helicase N-terminal domain Thert_00541 PF01371 Trp repressor protein Thert_00542 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thert_00543 PF02378 Phosphotransferase system, EIIC Thert_00547 PF08279 HTH domain Thert_00547 PF05043 Mga helix-turn-helix domain Thert_00547 PF00874 PRD domain Thert_00547 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_00547 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_00550 PF00005 ABC transporter Thert_00550 PF09383 NIL domain Thert_00552 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00553 PF03180 NLPA lipoprotein Thert_00554 PF14667 Polysaccharide biosynthesis C-terminal domain Thert_00554 PF01943 Polysaccharide biosynthesis protein Thert_00555 PF02664 S-Ribosylhomocysteinase (LuxS) Thert_00558 PF01546 Peptidase family M20/M25/M40 Thert_00558 PF07687 Peptidase dimerisation domain Thert_00559 PF01177 Asp/Glu/Hydantoin racemase Thert_00560 PF02843 Phosphoribosylglycinamide synthetase, C domain Thert_00560 PF02844 Phosphoribosylglycinamide synthetase, N domain Thert_00560 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Thert_00562 PF01808 AICARFT/IMPCHase bienzyme Thert_00562 PF02142 MGS-like domain Thert_00563 PF00551 Formyl transferase Thert_00564 PF02769 AIR synthase related protein, C-terminal domain Thert_00564 PF00586 AIR synthase related protein, N-terminal domain Thert_00566 PF00156 Phosphoribosyl transferase domain Thert_00567 PF01259 SAICAR synthetase Thert_00568 PF00731 AIR carboxylase Thert_00570 PF00860 Permease family Thert_00579 PF03543 Yersinia/Haemophilus virulence surface antigen Thert_00579 PF13332 Hemagglutinin repeat Thert_00579 PF02661 Fic/DOC family Thert_00579 PF05860 haemagglutination activity domain Thert_00579 PF13018 Extended Signal Peptide of Type V secretion system Thert_00592 PF00140 Sigma-70 factor, region 1.2 Thert_00592 PF04545 Sigma-70, region 4 Thert_00592 PF04542 Sigma-70 region 2 Thert_00592 PF04539 Sigma-70 region 3 Thert_00592 PF03979 Sigma-70 factor, region 1.1 Thert_00596 PF01381 Helix-turn-helix Thert_00601 PF00589 Phage integrase family Thert_00601 PF14659 Phage integrase, N-terminal SAM-like domain Thert_00602 PF00958 GMP synthase C terminal domain Thert_00602 PF00117 Glutamine amidotransferase class-I Thert_00602 PF02540 NAD synthase Thert_00603 PF00478 IMP dehydrogenase / GMP reductase domain Thert_00603 PF00571 CBS domain Thert_00605 PF00118 TCP-1/cpn60 chaperonin family Thert_00606 PF00166 Chaperonin 10 Kd subunit Thert_00614 PF00082 Subtilase family Thert_00616 PF08402 TOBE domain Thert_00616 PF00005 ABC transporter Thert_00617 PF02653 Branched-chain amino acid transport system / permease component Thert_00620 PF02653 Branched-chain amino acid transport system / permease component Thert_00622 PF11862 Domain of unknown function (DUF3382) Thert_00622 PF02653 Branched-chain amino acid transport system / permease component Thert_00623 PF00005 ABC transporter Thert_00623 PF12399 Branched-chain amino acid ATP-binding cassette transporter Thert_00627 PF00005 ABC transporter Thert_00630 PF00005 ABC transporter Thert_00630 PF00664 ABC transporter transmembrane region Thert_00632 PF13186 Iron-sulfur cluster-binding domain Thert_00632 PF04055 Radical SAM superfamily Thert_00634 PF04474 Protein of unknown function (DUF554) Thert_00639 PF00072 Response regulator receiver domain Thert_00639 PF04397 LytTr DNA-binding domain Thert_00640 PF01566 Natural resistance-associated macrophage protein Thert_00641 PF02629 CoA binding domain Thert_00641 PF06971 Putative DNA-binding protein N-terminus Thert_00642 PF13677 Membrane MotB of proton-channel complex MotA/MotB Thert_00642 PF00691 OmpA family Thert_00643 PF01618 MotA/TolQ/ExbB proton channel family Thert_00645 PF16326 ABC transporter C-terminal domain Thert_00645 PF12848 ABC transporter Thert_00645 PF00005 ABC transporter Thert_00646 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thert_00647 PF00814 Glycoprotease family Thert_00648 PF00583 Acetyltransferase (GNAT) family Thert_00649 PF00814 Glycoprotease family Thert_00650 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thert_00651 PF12822 ECF transporter, substrate-specific component Thert_00652 PF00696 Amino acid kinase family Thert_00653 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thert_00653 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thert_00654 PF01979 Amidohydrolase family Thert_00655 PF09335 SNARE associated Golgi protein Thert_00656 PF00149 Calcineurin-like phosphoesterase Thert_00657 PF09371 Tex-like protein N-terminal domain Thert_00657 PF16921 Tex protein YqgF-like domain Thert_00657 PF17674 HHH domain Thert_00657 PF00575 S1 RNA binding domain Thert_00658 PF00472 RF-1 domain Thert_00658 PF03462 PCRF domain Thert_00660 PF02810 SEC-C motif Thert_00660 PF07517 SecA DEAD-like domain Thert_00660 PF01043 SecA preprotein cross-linking domain Thert_00660 PF07516 SecA Wing and Scaffold domain Thert_00662 PF08279 HTH domain Thert_00662 PF02829 3H domain Thert_00665 PF00072 Response regulator receiver domain Thert_00667 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Thert_00667 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Thert_00668 PF00005 ABC transporter Thert_00669 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00670 PF00497 Bacterial extracellular solute-binding proteins, family 3 Thert_00674 PF02561 Flagellar protein FliS Thert_00675 PF02465 Flagellar hook-associated protein 2 N-terminus Thert_00675 PF07196 Flagellin hook IN motif Thert_00675 PF07195 Flagellar hook-associated protein 2 C-terminus Thert_00678 PF07499 RuvA, C-terminal domain Thert_00678 PF01330 RuvA N terminal domain Thert_00681 PF02348 Cytidylyltransferase Thert_00682 PF02350 UDP-N-acetylglucosamine 2-epimerase Thert_00683 PF03102 NeuB family Thert_00683 PF08666 SAF domain Thert_00685 PF00483 Nucleotidyl transferase Thert_00687 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thert_00688 PF02719 Polysaccharide biosynthesis protein Thert_00688 PF08485 Polysaccharide biosynthesis protein C-terminal Thert_00689 PF01973 Protein of unknown function DUF115 Thert_00694 PF00154 recA bacterial DNA recombination protein Thert_00694 PF03161 LAGLIDADG DNA endonuclease family Thert_00695 PF00700 Bacterial flagellin C-terminal helical region Thert_00695 PF00669 Bacterial flagellin N-terminal helical region Thert_00696 PF02599 Global regulator protein family Thert_00697 PF02623 FliW protein Thert_00699 PF00669 Bacterial flagellin N-terminal helical region Thert_00699 PF00700 Bacterial flagellin C-terminal helical region Thert_00700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thert_00700 PF00460 Flagella basal body rod protein Thert_00705 PF00156 Phosphoribosyl transferase domain Thert_00706 PF14490 Helix-hairpin-helix containing domain Thert_00706 PF13538 UvrD-like helicase C-terminal domain Thert_00706 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Thert_00708 PF01966 HD domain Thert_00709 PF00438 S-adenosylmethionine synthetase, N-terminal domain Thert_00709 PF02772 S-adenosylmethionine synthetase, central domain Thert_00709 PF02773 S-adenosylmethionine synthetase, C-terminal domain Thert_00711 PF02915 Rubrerythrin Thert_00712 PF00578 AhpC/TSA family Thert_00713 PF00121 Triosephosphate isomerase Thert_00715 PF06866 Protein of unknown function (DUF1256) Thert_00717 PF00989 PAS fold Thert_00717 PF00512 His Kinase A (phospho-acceptor) domain Thert_00717 PF16736 Single Cache-like Thert_00717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00718 PF00486 Transcriptional regulatory protein, C terminal Thert_00718 PF00072 Response regulator receiver domain Thert_00719 PF01979 Amidohydrolase family Thert_00720 PF00356 Bacterial regulatory proteins, lacI family Thert_00724 PF04239 Protein of unknown function (DUF421) Thert_00734 PF02548 Ketopantoate hydroxymethyltransferase Thert_00735 PF02569 Pantoate-beta-alanine ligase Thert_00736 PF02261 Aspartate decarboxylase Thert_00738 PF00579 tRNA synthetases class I (W and Y) Thert_00738 PF01479 S4 domain Thert_00740 PF00330 Aconitase family (aconitate hydratase) Thert_00742 PF00682 HMGL-like Thert_00743 PF03123 CAT RNA binding domain Thert_00743 PF00874 PRD domain Thert_00746 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thert_00746 PF00672 HAMP domain Thert_00746 PF02743 Cache domain Thert_00748 PF02885 Glycosyl transferase family, helical bundle domain Thert_00748 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Thert_00748 PF00591 Glycosyl transferase family, a/b domain Thert_00749 PF01676 Metalloenzyme superfamily Thert_00750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thert_00751 PF00392 Bacterial regulatory proteins, gntR family Thert_00751 PF07702 UTRA domain Thert_00756 PF02608 ABC transporter substrate-binding protein PnrA-like Thert_00757 PF04961 Formiminotransferase-cyclodeaminase Thert_00758 PF07837 Formiminotransferase domain, N-terminal subdomain Thert_00758 PF02971 Formiminotransferase domain Thert_00761 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thert_00761 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thert_00761 PF10371 Domain of unknown function Thert_00761 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thert_00761 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thert_00762 PF00180 Isocitrate/isopropylmalate dehydrogenase Thert_00778 PF02654 Cobalamin-5-phosphate synthase Thert_00779 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Thert_00780 PF00155 Aminotransferase class I and II Thert_00784 PF03186 CobD/Cbib protein Thert_00785 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thert_00785 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thert_00786 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Thert_00786 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thert_00788 PF00005 ABC transporter Thert_00789 PF01032 FecCD transport family Thert_00790 PF01497 Periplasmic binding protein Thert_00795 PF04754 Putative transposase, YhgA-like Thert_00804 PF00005 ABC transporter Thert_00812 PF13520 Amino acid permease Thert_00813 PF01170 Putative RNA methylase family UPF0020 Thert_00813 PF02926 THUMP domain Thert_00816 PF13649 Methyltransferase domain Thert_00818 PF01037 Lrp/AsnC ligand binding domain Thert_00820 PF00155 Aminotransferase class I and II Thert_00822 PF02421 Ferrous iron transport protein B Thert_00822 PF07664 Ferrous iron transport protein B C terminus Thert_00822 PF17910 FeoB cytosolic helical domain Thert_00822 PF07670 Nucleoside recognition Thert_00825 PF01569 PAP2 superfamily Thert_00827 PF01297 Zinc-uptake complex component A periplasmic Thert_00828 PF00005 ABC transporter Thert_00830 PF00950 ABC 3 transport family Thert_00833 PF01380 SIS domain Thert_00835 PF00294 pfkB family carbohydrate kinase Thert_00838 PF01968 Hydantoinase/oxoprolinase Thert_00838 PF05378 Hydantoinase/oxoprolinase N-terminal region Thert_00841 PF00356 Bacterial regulatory proteins, lacI family Thert_00846 PF01925 Sulfite exporter TauE/SafE Thert_00847 PF01207 Dihydrouridine synthase (Dus) Thert_00852 PF03702 Anhydro-N-acetylmuramic acid kinase Thert_00853 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thert_00855 PF00933 Glycosyl hydrolase family 3 N terminal domain Thert_00855 PF01915 Glycosyl hydrolase family 3 C-terminal domain Thert_00858 PF07075 Protein of unknown function (DUF1343) Thert_00860 PF00144 Beta-lactamase Thert_00861 PF13580 SIS domain Thert_00862 PF01418 Helix-turn-helix domain, rpiR family Thert_00862 PF01380 SIS domain Thert_00864 PF01380 SIS domain Thert_00864 PF01418 Helix-turn-helix domain, rpiR family Thert_00866 PF01418 Helix-turn-helix domain, rpiR family Thert_00866 PF01380 SIS domain Thert_00872 PF02378 Phosphotransferase system, EIIC Thert_00873 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thert_00874 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_00877 PF00158 Sigma-54 interaction domain Thert_00877 PF00874 PRD domain Thert_00877 PF03610 PTS system fructose IIA component Thert_00878 PF13520 Amino acid permease Thert_00879 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thert_00882 PF01384 Phosphate transporter family Thert_00888 PF03591 AzlC protein Thert_00889 PF08264 Anticodon-binding domain of tRNA Thert_00889 PF00133 tRNA synthetases class I (I, L, M and V) Thert_00889 PF09334 tRNA synthetases class I (M) Thert_00889 PF13603 Leucyl-tRNA synthetase, Domain 2 Thert_00895 PF00912 Transglycosylase Thert_00895 PF00905 Penicillin binding protein transpeptidase domain Thert_00896 PF00155 Aminotransferase class I and II Thert_00898 PF02653 Branched-chain amino acid transport system / permease component Thert_00899 PF00005 ABC transporter Thert_00900 PF13407 Periplasmic binding protein domain Thert_00902 PF13407 Periplasmic binding protein domain Thert_00903 PF00072 Response regulator receiver domain Thert_00903 PF12833 Helix-turn-helix domain Thert_00905 PF07694 5TMR of 5TMR-LYT Thert_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_00905 PF06580 Histidine kinase Thert_00907 PF17099 Tryptophan transporter TrpP Thert_00911 PF02653 Branched-chain amino acid transport system / permease component Thert_00912 PF00005 ABC transporter Thert_00913 PF13407 Periplasmic binding protein domain Thert_00917 PF04962 KduI/IolB family Thert_00918 PF00356 Bacterial regulatory proteins, lacI family Thert_00921 PF08125 Mannitol dehydrogenase C-terminal domain Thert_00921 PF01232 Mannitol dehydrogenase Rossmann domain Thert_00922 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Thert_00922 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Thert_00923 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_00923 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_00924 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thert_00924 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thert_00926 PF08220 DeoR-like helix-turn-helix domain Thert_00926 PF00455 DeoR C terminal sensor domain Thert_00928 PF01554 MatE Thert_00929 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Thert_00929 PF08666 SAF domain Thert_00930 PF01232 Mannitol dehydrogenase Rossmann domain Thert_00930 PF08125 Mannitol dehydrogenase C-terminal domain Thert_00931 PF11975 Family 4 glycosyl hydrolase C-terminal domain Thert_00931 PF02056 Family 4 glycosyl hydrolase Thert_00932 PF00295 Glycosyl hydrolases family 28 Thert_00933 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00934 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00936 PF07470 Glycosyl Hydrolase Family 88 Thert_00937 PF00356 Bacterial regulatory proteins, lacI family Thert_00938 PF02614 Glucuronate isomerase Thert_00939 PF01476 LysM domain Thert_00939 PF00877 NlpC/P60 family Thert_00941 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Thert_00941 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_00945 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Thert_00945 PF00056 lactate/malate dehydrogenase, NAD binding domain Thert_00953 PF13439 Glycosyltransferase Family 4 Thert_00953 PF00534 Glycosyl transferases group 1 Thert_00954 PF18085 Maltokinase N-terminal cap domain Thert_00954 PF01636 Phosphotransferase enzyme family Thert_00955 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Thert_00955 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Thert_00959 PF01145 SPFH domain / Band 7 family Thert_00968 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00970 PF00528 Binding-protein-dependent transport system inner membrane component Thert_00974 PF01548 Transposase Thert_00974 PF02371 Transposase IS116/IS110/IS902 family Thert_00978 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_00978 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_00979 PF02780 Transketolase, C-terminal domain Thert_00979 PF02779 Transketolase, pyrimidine binding domain Thert_00980 PF00456 Transketolase, thiamine diphosphate binding domain Thert_00984 PF00356 Bacterial regulatory proteins, lacI family Thert_00986 PF00232 Glycosyl hydrolase family 1 Thert_00987 PF01925 Sulfite exporter TauE/SafE Thert_00988 PF04055 Radical SAM superfamily Thert_00988 PF13186 Iron-sulfur cluster-binding domain Thert_00991 PF16347 Domain of unknown function (DUF4976) Thert_00991 PF00884 Sulfatase Thert_00995 PF00884 Sulfatase Thert_00995 PF16347 Domain of unknown function (DUF4976) Thert_00996 PF02378 Phosphotransferase system, EIIC Thert_00997 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_00998 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thert_00999 PF03610 PTS system fructose IIA component Thert_00999 PF00158 Sigma-54 interaction domain Thert_00999 PF00874 PRD domain Thert_01002 PF06100 MCRA family Thert_01005 PF09861 Lactate racemase N-terminal domain Thert_01006 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thert_01006 PF10996 Beta-Casp domain Thert_01006 PF00753 Metallo-beta-lactamase superfamily Thert_01007 PF01557 Fumarylacetoacetate (FAA) hydrolase family Thert_01008 PF18152 DAHP synthase ferredoxin-like domain Thert_01008 PF00793 DAHP synthetase I family Thert_01011 PF00588 SpoU rRNA Methylase family Thert_01013 PF01554 MatE Thert_01015 PF11799 impB/mucB/samB family C-terminal domain Thert_01015 PF00817 impB/mucB/samB family Thert_01015 PF11798 IMS family HHH motif Thert_01017 PF01022 Bacterial regulatory protein, arsR family Thert_01018 PF00403 Heavy-metal-associated domain Thert_01022 PF00440 Bacterial regulatory proteins, tetR family Thert_01022 PF13977 BetI-type transcriptional repressor, C-terminal Thert_01025 PF13732 Domain of unknown function (DUF4162) Thert_01025 PF00005 ABC transporter Thert_01028 PF01402 Ribbon-helix-helix protein, copG family Thert_01028 PF08753 NikR C terminal nickel binding domain Thert_01030 PF13190 PDGLE domain Thert_01030 PF01891 Cobalt uptake substrate-specific transmembrane region Thert_01031 PF13190 PDGLE domain Thert_01031 PF01891 Cobalt uptake substrate-specific transmembrane region Thert_01033 PF00005 ABC transporter Thert_01036 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thert_01036 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_01037 PF08281 Sigma-70, region 4 Thert_01037 PF04542 Sigma-70 region 2 Thert_01039 PF02779 Transketolase, pyrimidine binding domain Thert_01039 PF02780 Transketolase, C-terminal domain Thert_01040 PF00456 Transketolase, thiamine diphosphate binding domain Thert_01041 PF03611 PTS system sugar-specific permease component Thert_01044 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_01045 PF00294 pfkB family carbohydrate kinase Thert_01047 PF00356 Bacterial regulatory proteins, lacI family Thert_01048 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thert_01048 PF00753 Metallo-beta-lactamase superfamily Thert_01048 PF10996 Beta-Casp domain Thert_01049 PF01047 MarR family Thert_01049 PF00480 ROK family Thert_01051 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_01051 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_01052 PF01261 Xylose isomerase-like TIM barrel Thert_01054 PF13361 UvrD-like helicase C-terminal domain Thert_01054 PF00580 UvrD/REP helicase N-terminal domain Thert_01055 PF13538 UvrD-like helicase C-terminal domain Thert_01057 PF00561 alpha/beta hydrolase fold Thert_01057 PF08386 TAP-like protein Thert_01058 PF14759 Reductase C-terminal Thert_01058 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_01059 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Thert_01059 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_01063 PF09992 Phosphodiester glycosidase Thert_01063 PF12708 Pectate lyase superfamily protein Thert_01064 PF00465 Iron-containing alcohol dehydrogenase Thert_01066 PF00535 Glycosyl transferase family 2 Thert_01066 PF13181 Tetratricopeptide repeat Thert_01067 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Thert_01067 PF00672 HAMP domain Thert_01067 PF02743 Cache domain Thert_01071 PF03023 Lipid II flippase MurJ Thert_01072 PF07977 FabA-like domain Thert_01073 PF00664 ABC transporter transmembrane region Thert_01073 PF00005 ABC transporter Thert_01074 PF00664 ABC transporter transmembrane region Thert_01074 PF00005 ABC transporter Thert_01076 PF00460 Flagella basal body rod protein Thert_01076 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thert_01077 PF00460 Flagella basal body rod protein Thert_01077 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thert_01079 PF12116 Stage III sporulation protein D Thert_01082 PF08486 Stage II sporulation protein Thert_01092 PF01546 Peptidase family M20/M25/M40 Thert_01093 PF13520 Amino acid permease Thert_01095 PF13520 Amino acid permease Thert_01097 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thert_01100 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thert_01101 PF03829 PTS system glucitol/sorbitol-specific IIA component Thert_01102 PF07663 Sorbitol phosphotransferase enzyme II C-terminus Thert_01102 PF03612 Sorbitol phosphotransferase enzyme II N-terminus Thert_01103 PF03608 PTS system enzyme II sorbitol-specific factor Thert_01105 PF04198 Putative sugar-binding domain Thert_01105 PF13936 Helix-turn-helix domain Thert_01106 PF00106 short chain dehydrogenase Thert_01107 PF02350 UDP-N-acetylglucosamine 2-epimerase Thert_01108 PF00953 Glycosyl transferase family 4 Thert_01112 PF02502 Ribose/Galactose Isomerase Thert_01113 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thert_01114 PF01300 Telomere recombination Thert_01114 PF03481 Putative GTP-binding controlling metal-binding Thert_01115 PF02535 ZIP Zinc transporter Thert_01116 PF03462 PCRF domain Thert_01116 PF00472 RF-1 domain Thert_01117 PF05175 Methyltransferase small domain Thert_01117 PF17827 PrmC N-terminal domain Thert_01119 PF07136 Protein of unknown function (DUF1385) Thert_01120 PF00265 Thymidine kinase Thert_01121 PF01197 Ribosomal protein L31 Thert_01122 PF07497 Rho termination factor, RNA-binding domain Thert_01122 PF07498 Rho termination factor, N-terminal domain Thert_01122 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thert_01125 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thert_01126 PF01116 Fructose-bisphosphate aldolase class-II Thert_01127 PF00486 Transcriptional regulatory protein, C terminal Thert_01127 PF00072 Response regulator receiver domain Thert_01128 PF04122 Putative cell wall binding repeat 2 Thert_01128 PF01520 N-acetylmuramoyl-L-alanine amidase Thert_01130 PF07282 Putative transposase DNA-binding domain Thert_01130 PF12323 Helix-turn-helix domain Thert_01130 PF01385 Probable transposase Thert_01132 PF17806 Sarcosine oxidase A3 domain Thert_01132 PF01571 Aminomethyltransferase folate-binding domain Thert_01132 PF08669 Glycine cleavage T-protein C-terminal barrel domain Thert_01132 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_01133 PF00664 ABC transporter transmembrane region Thert_01133 PF00005 ABC transporter Thert_01134 PF00005 ABC transporter Thert_01134 PF00664 ABC transporter transmembrane region Thert_01138 PF02378 Phosphotransferase system, EIIC Thert_01138 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_01139 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_01139 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_01140 PF00294 pfkB family carbohydrate kinase Thert_01141 PF00455 DeoR C terminal sensor domain Thert_01141 PF08220 DeoR-like helix-turn-helix domain Thert_01146 PF00535 Glycosyl transferase family 2 Thert_01148 PF00535 Glycosyl transferase family 2 Thert_01150 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Thert_01155 PF04754 Putative transposase, YhgA-like Thert_01156 PF00512 His Kinase A (phospho-acceptor) domain Thert_01156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01156 PF00672 HAMP domain Thert_01157 PF00486 Transcriptional regulatory protein, C terminal Thert_01157 PF00072 Response regulator receiver domain Thert_01158 PF00395 S-layer homology domain Thert_01170 PF06418 CTP synthase N-terminus Thert_01170 PF00117 Glutamine amidotransferase class-I Thert_01173 PF02811 PHP domain Thert_01176 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thert_01176 PF01842 ACT domain Thert_01176 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thert_01177 PF00266 Aminotransferase class-V Thert_01178 PF02595 Glycerate kinase family Thert_01179 PF17820 PDZ domain Thert_01179 PF03572 Peptidase family S41 Thert_01179 PF01471 Putative peptidoglycan binding domain Thert_01180 PF08544 GHMP kinases C terminal Thert_01180 PF00288 GHMP kinases N terminal domain Thert_01183 PF00291 Pyridoxal-phosphate dependent enzyme Thert_01184 PF01842 ACT domain Thert_01184 PF00742 Homoserine dehydrogenase Thert_01184 PF03447 Homoserine dehydrogenase, NAD binding domain Thert_01187 PF00753 Metallo-beta-lactamase superfamily Thert_01189 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thert_01189 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thert_01189 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thert_01190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thert_01191 PF00664 ABC transporter transmembrane region Thert_01191 PF00005 ABC transporter Thert_01192 PF00005 ABC transporter Thert_01192 PF00664 ABC transporter transmembrane region Thert_01193 PF01047 MarR family Thert_01195 PF00654 Voltage gated chloride channel Thert_01197 PF00571 CBS domain Thert_01197 PF00005 ABC transporter Thert_01198 PF00528 Binding-protein-dependent transport system inner membrane component Thert_01199 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Thert_01200 PF09827 CRISPR associated protein Cas2 Thert_01201 PF01867 CRISPR associated protein Cas1 Thert_01207 PF18395 Cas3 C-terminal domain Thert_01207 PF00270 DEAD/DEAH box helicase Thert_01207 PF18019 HD domain Thert_01216 PF03787 RAMP superfamily Thert_01226 PF01592 NifU-like N terminal domain Thert_01227 PF00266 Aminotransferase class-V Thert_01228 PF01458 Uncharacterized protein family (UPF0051) Thert_01230 PF01458 Uncharacterized protein family (UPF0051) Thert_01231 PF00005 ABC transporter Thert_01232 PF00166 Chaperonin 10 Kd subunit Thert_01233 PF00462 Glutaredoxin Thert_01234 PF08141 Small acid-soluble spore protein H family Thert_01238 PF00171 Aldehyde dehydrogenase family Thert_01238 PF00465 Iron-containing alcohol dehydrogenase Thert_01239 PF03063 Prismane/CO dehydrogenase family Thert_01240 PF00248 Aldo/keto reductase family Thert_01245 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thert_01251 PF00005 ABC transporter Thert_01261 PF09957 Bacterial antitoxin of type II TA system, VapB Thert_01265 PF00990 Diguanylate cyclase, GGDEF domain Thert_01268 PF13180 PDZ domain Thert_01269 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thert_01273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01273 PF00512 His Kinase A (phospho-acceptor) domain Thert_01273 PF13426 PAS domain Thert_01273 PF00672 HAMP domain Thert_01274 PF00072 Response regulator receiver domain Thert_01274 PF00486 Transcriptional regulatory protein, C terminal Thert_01277 PF08525 Opacity-associated protein A N-terminal motif Thert_01277 PF01551 Peptidase family M23 Thert_01277 PF01476 LysM domain Thert_01286 PF04754 Putative transposase, YhgA-like Thert_01287 PF06782 Uncharacterised protein family (UPF0236) Thert_01292 PF08448 PAS fold Thert_01292 PF00990 Diguanylate cyclase, GGDEF domain Thert_01300 PF04754 Putative transposase, YhgA-like Thert_01306 PF01807 CHC2 zinc finger Thert_01306 PF08275 DNA primase catalytic core, N-terminal domain Thert_01313 PF04029 2-phosphosulpholactate phosphatase Thert_01315 PF09370 Phosphoenolpyruvate hydrolase-like Thert_01317 PF02954 Bacterial regulatory protein, Fis family Thert_01317 PF09370 Phosphoenolpyruvate hydrolase-like Thert_01317 PF00158 Sigma-54 interaction domain Thert_01321 PF01420 Type I restriction modification DNA specificity domain Thert_01322 PF12161 HsdM N-terminal domain Thert_01322 PF02384 N-6 DNA Methylase Thert_01323 PF04851 Type III restriction enzyme, res subunit Thert_01323 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Thert_01323 PF00271 Helicase conserved C-terminal domain Thert_01323 PF08463 EcoEI R protein C-terminal Thert_01328 PF00709 Adenylosuccinate synthetase Thert_01334 PF13426 PAS domain Thert_01334 PF00512 His Kinase A (phospho-acceptor) domain Thert_01334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01334 PF00672 HAMP domain Thert_01337 PF00672 HAMP domain Thert_01337 PF00512 His Kinase A (phospho-acceptor) domain Thert_01337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01338 PF00486 Transcriptional regulatory protein, C terminal Thert_01338 PF00072 Response regulator receiver domain Thert_01340 PF01566 Natural resistance-associated macrophage protein Thert_01341 PF03448 MgtE intracellular N domain Thert_01341 PF00571 CBS domain Thert_01341 PF01769 Divalent cation transporter Thert_01342 PF13545 Crp-like helix-turn-helix domain Thert_01342 PF00027 Cyclic nucleotide-binding domain Thert_01343 PF03796 DnaB-like helicase C terminal domain Thert_01343 PF00772 DnaB-like helicase N terminal domain Thert_01344 PF01281 Ribosomal protein L9, N-terminal domain Thert_01344 PF03948 Ribosomal protein L9, C-terminal domain Thert_01345 PF01368 DHH family Thert_01345 PF02272 DHHA1 domain Thert_01347 PF09991 Predicted membrane protein (DUF2232) Thert_01349 PF01084 Ribosomal protein S18 Thert_01350 PF00436 Single-strand binding protein family Thert_01351 PF01250 Ribosomal protein S6 Thert_01353 PF06107 Bacterial protein of unknown function (DUF951) Thert_01354 PF00924 Mechanosensitive ion channel Thert_01356 PF06866 Protein of unknown function (DUF1256) Thert_01358 PF08245 Mur ligase middle domain Thert_01358 PF02875 Mur ligase family, glutamate ligase domain Thert_01358 PF08443 RimK-like ATP-grasp domain Thert_01360 PF03575 Peptidase family S51 Thert_01361 PF00781 Diacylglycerol kinase catalytic domain Thert_01364 PF00266 Aminotransferase class-V Thert_01365 PF04055 Radical SAM superfamily Thert_01365 PF06968 Biotin and Thiamin Synthesis associated domain Thert_01366 PF17762 HTH domain found in ParB protein Thert_01366 PF02195 ParB-like nuclease domain Thert_01367 PF13614 AAA domain Thert_01369 PF00293 NUDIX domain Thert_01370 PF02527 rRNA small subunit methyltransferase G Thert_01371 PF01134 Glucose inhibited division protein A Thert_01371 PF13932 GidA associated domain Thert_01373 PF10396 GTP-binding protein TrmE N-terminus Thert_01373 PF01926 50S ribosome-binding GTPase Thert_01373 PF12631 MnmE helical domain Thert_01375 PF01424 R3H domain Thert_01375 PF14804 Jag N-terminus Thert_01376 PF02096 60Kd inner membrane protein Thert_01377 PF01809 Putative membrane protein insertion efficiency factor Thert_01378 PF00825 Ribonuclease P Thert_01379 PF00308 Bacterial dnaA protein Thert_01379 PF11638 DnaA N-terminal domain Thert_01379 PF08299 Bacterial dnaA protein helix-turn-helix Thert_01380 PF00712 DNA polymerase III beta subunit, N-terminal domain Thert_01380 PF02767 DNA polymerase III beta subunit, central domain Thert_01380 PF02768 DNA polymerase III beta subunit, C-terminal domain Thert_01382 PF02463 RecF/RecN/SMC N terminal domain Thert_01384 PF07685 CobB/CobQ-like glutamine amidotransferase domain Thert_01386 PF08245 Mur ligase middle domain Thert_01386 PF08353 Domain of unknown function (DUF1727) Thert_01387 PF00204 DNA gyrase B Thert_01387 PF00986 DNA gyrase B subunit, carboxyl terminus Thert_01387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01387 PF01751 Toprim domain Thert_01388 PF03989 DNA gyrase C-terminal domain, beta-propeller Thert_01388 PF00521 DNA gyrase/topoisomerase IV, subunit A Thert_01391 PF10369 Small subunit of acetolactate synthase Thert_01391 PF01842 ACT domain Thert_01392 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thert_01392 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Thert_01393 PF00682 HMGL-like Thert_01394 PF00330 Aconitase family (aconitate hydratase) Thert_01395 PF00694 Aconitase C-terminal domain Thert_01396 PF00180 Isocitrate/isopropylmalate dehydrogenase Thert_01397 PF00920 Dehydratase family Thert_01398 PF00205 Thiamine pyrophosphate enzyme, central domain Thert_01398 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thert_01398 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thert_01399 PF01872 RibD C-terminal domain Thert_01399 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Thert_01400 PF00677 Lumazine binding domain Thert_01402 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Thert_01402 PF00925 GTP cyclohydrolase II Thert_01403 PF00885 6,7-dimethyl-8-ribityllumazine synthase Thert_01406 PF01594 AI-2E family transporter Thert_01408 PF10502 Signal peptidase, peptidase S26 Thert_01409 PF02403 Seryl-tRNA synthetase N-terminal domain Thert_01409 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thert_01411 PF03816 Cell envelope-related transcriptional attenuator domain Thert_01412 PF03699 Uncharacterised protein family (UPF0182) Thert_01417 PF13186 Iron-sulfur cluster-binding domain Thert_01417 PF04055 Radical SAM superfamily Thert_01418 PF13186 Iron-sulfur cluster-binding domain Thert_01418 PF04055 Radical SAM superfamily Thert_01432 PF01807 CHC2 zinc finger Thert_01432 PF08275 DNA primase catalytic core, N-terminal domain Thert_01437 PF00589 Phage integrase family Thert_01437 PF14659 Phage integrase, N-terminal SAM-like domain Thert_01438 PF14437 MafB19-like deaminase Thert_01439 PF01966 HD domain Thert_01440 PF12169 DNA polymerase III subunits gamma and tau domain III Thert_01441 PF02575 YbaB/EbfC DNA-binding family Thert_01442 PF02132 RecR protein Thert_01442 PF00633 Helix-hairpin-helix motif Thert_01442 PF13662 Toprim domain Thert_01444 PF03447 Homoserine dehydrogenase, NAD binding domain Thert_01444 PF00742 Homoserine dehydrogenase Thert_01444 PF01842 ACT domain Thert_01445 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thert_01446 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Thert_01447 PF01966 HD domain Thert_01457 PF00483 Nucleotidyl transferase Thert_01461 PF00849 RNA pseudouridylate synthase Thert_01461 PF01479 S4 domain Thert_01463 PF01228 Glycine radical Thert_01463 PF02901 Pyruvate formate lyase-like Thert_01465 PF04055 Radical SAM superfamily Thert_01466 PF16123 Hydroxyacylglutathione hydrolase C-terminus Thert_01466 PF00753 Metallo-beta-lactamase superfamily Thert_01467 PF05681 Fumarate hydratase (Fumerase) Thert_01469 PF03167 Uracil DNA glycosylase superfamily Thert_01473 PF00480 ROK family Thert_01474 PF13302 Acetyltransferase (GNAT) domain Thert_01474 PF13673 Acetyltransferase (GNAT) domain Thert_01474 PF03352 Methyladenine glycosylase Thert_01474 PF00117 Glutamine amidotransferase class-I Thert_01474 PF00958 GMP synthase C terminal domain Thert_01476 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thert_01476 PF01276 Orn/Lys/Arg decarboxylase, major domain Thert_01477 PF02223 Thymidylate kinase Thert_01478 PF06153 Cyclic-di-AMP receptor Thert_01482 PF04468 PSP1 C-terminal conserved region Thert_01484 PF01925 Sulfite exporter TauE/SafE Thert_01491 PF05175 Methyltransferase small domain Thert_01492 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thert_01493 PF01545 Cation efflux family Thert_01493 PF16916 Dimerisation domain of Zinc Transporter Thert_01494 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thert_01494 PF18277 AbrB C-terminal domain Thert_01496 PF07670 Nucleoside recognition Thert_01498 PF07670 Nucleoside recognition Thert_01499 PF01966 HD domain Thert_01499 PF01743 Poly A polymerase head domain Thert_01499 PF12627 Probable RNA and SrmB- binding site of polymerase A Thert_01501 PF01588 Putative tRNA binding domain Thert_01501 PF09334 tRNA synthetases class I (M) Thert_01501 PF08264 Anticodon-binding domain of tRNA Thert_01505 PF01548 Transposase Thert_01505 PF02371 Transposase IS116/IS110/IS902 family Thert_01511 PF13181 Tetratricopeptide repeat Thert_01516 PF01026 TatD related DNase Thert_01519 PF06725 3D domain Thert_01519 PF03990 G5-linked-Ubiquitin-like domain Thert_01519 PF07501 G5 domain Thert_01520 PF00398 Ribosomal RNA adenine dimethylase Thert_01524 PF01883 Iron-sulfur cluster assembly protein Thert_01524 PF10609 NUBPL iron-transfer P-loop NTPase Thert_01529 PF17862 AAA+ lid domain Thert_01529 PF06480 FtsH Extracellular Thert_01529 PF01434 Peptidase family M41 Thert_01529 PF00004 ATPase family associated with various cellular activities (AAA) Thert_01533 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Thert_01533 PF13244 Domain of unknown function (DUF4040) Thert_01533 PF00361 Proton-conducting membrane transporter Thert_01535 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Thert_01537 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Thert_01537 PF00374 Nickel-dependent hydrogenase Thert_01538 PF12838 4Fe-4S dicluster domain Thert_01539 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thert_01540 PF02492 CobW/HypB/UreG, nucleotide-binding domain Thert_01541 PF17788 HypF Kae1-like domain Thert_01541 PF01300 Telomere recombination Thert_01541 PF00708 Acylphosphatase Thert_01541 PF07503 HypF finger Thert_01542 PF01455 HupF/HypC family Thert_01543 PF01924 Hydrogenase formation hypA family Thert_01544 PF00586 AIR synthase related protein, N-terminal domain Thert_01544 PF02769 AIR synthase related protein, C-terminal domain Thert_01545 PF07486 Cell Wall Hydrolase Thert_01548 PF00271 Helicase conserved C-terminal domain Thert_01548 PF00270 DEAD/DEAH box helicase Thert_01550 PF01385 Probable transposase Thert_01550 PF12323 Helix-turn-helix domain Thert_01550 PF07282 Putative transposase DNA-binding domain Thert_01551 PF16875 Glycosyl hydrolase family 36 N-terminal domain Thert_01551 PF16874 Glycosyl hydrolase family 36 C-terminal domain Thert_01552 PF07702 UTRA domain Thert_01552 PF00392 Bacterial regulatory proteins, gntR family Thert_01553 PF00005 ABC transporter Thert_01555 PF13419 Haloacid dehalogenase-like hydrolase Thert_01558 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thert_01558 PF13187 4Fe-4S dicluster domain Thert_01558 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thert_01559 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thert_01559 PF00175 Oxidoreductase NAD-binding domain Thert_01560 PF17179 4Fe-4S dicluster domain Thert_01582 PF13171 Protein of unknown function (DUF4004) Thert_01585 PF00011 Hsp20/alpha crystallin family Thert_01587 PF00356 Bacterial regulatory proteins, lacI family Thert_01588 PF08245 Mur ligase middle domain Thert_01588 PF02875 Mur ligase family, glutamate ligase domain Thert_01588 PF01225 Mur ligase family, catalytic domain Thert_01589 PF00156 Phosphoribosyl transferase domain Thert_01589 PF09182 Bacterial purine repressor, N-terminal Thert_01590 PF04026 SpoVG Thert_01591 PF12804 MobA-like NTP transferase domain Thert_01591 PF00132 Bacterial transferase hexapeptide (six repeats) Thert_01592 PF14572 Phosphoribosyl synthetase-associated domain Thert_01592 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Thert_01593 PF00486 Transcriptional regulatory protein, C terminal Thert_01593 PF00072 Response regulator receiver domain Thert_01594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01594 PF00672 HAMP domain Thert_01594 PF00512 His Kinase A (phospho-acceptor) domain Thert_01595 PF13180 PDZ domain Thert_01596 PF01195 Peptidyl-tRNA hydrolase Thert_01598 PF03461 TRCF domain Thert_01598 PF00270 DEAD/DEAH box helicase Thert_01598 PF02559 CarD-like/TRCF domain Thert_01598 PF17757 UvrB interaction domain Thert_01598 PF00271 Helicase conserved C-terminal domain Thert_01602 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Thert_01602 PF15714 Stage V sporulation protein T C-terminal, transcription factor Thert_01603 PF05582 YabG peptidase U57 Thert_01605 PF06257 Biofilm formation stimulator VEG Thert_01608 PF00288 GHMP kinases N terminal domain Thert_01608 PF08544 GHMP kinases C terminal Thert_01609 PF00392 Bacterial regulatory proteins, gntR family Thert_01609 PF07729 FCD domain Thert_01613 PF03323 Bacillus/Clostridium GerA spore germination protein Thert_01615 PF03845 Spore germination protein Thert_01616 PF05504 Spore germination B3/ GerAC like, C-terminal Thert_01618 PF09551 Stage II sporulation protein R (spore_II_R) Thert_01619 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thert_01619 PF01276 Orn/Lys/Arg decarboxylase, major domain Thert_01621 PF07486 Cell Wall Hydrolase Thert_01621 PF01471 Putative peptidoglycan binding domain Thert_01622 PF03413 Peptidase propeptide and YPEB domain Thert_01622 PF14620 YpeB sporulation Thert_01623 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thert_01624 PF07478 D-ala D-ala ligase C-terminus Thert_01624 PF01820 D-ala D-ala ligase N-terminus Thert_01626 PF03485 Arginyl tRNA synthetase N terminal domain Thert_01626 PF05746 DALR anticodon binding domain Thert_01626 PF00750 tRNA synthetases class I (R) Thert_01628 PF00005 ABC transporter Thert_01628 PF13732 Domain of unknown function (DUF4162) Thert_01630 PF01180 Dihydroorotate dehydrogenase Thert_01631 PF13520 Amino acid permease Thert_01632 PF01212 Beta-eliminating lyase Thert_01633 PF00248 Aldo/keto reductase family Thert_01636 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Thert_01636 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Thert_01637 PF09515 Thiamine transporter protein (Thia_YuaJ) Thert_01638 PF04101 Glycosyltransferase family 28 C-terminal domain Thert_01638 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Thert_01639 PF01569 PAP2 superfamily Thert_01646 PF00905 Penicillin binding protein transpeptidase domain Thert_01646 PF03717 Penicillin-binding Protein dimerisation domain Thert_01647 PF12708 Pectate lyase superfamily protein Thert_01647 PF09992 Phosphodiester glycosidase Thert_01648 PF04434 SWIM zinc finger Thert_01648 PF00176 SNF2 family N-terminal domain Thert_01648 PF00271 Helicase conserved C-terminal domain Thert_01656 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thert_01656 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thert_01657 PF01960 ArgJ family Thert_01658 PF00696 Amino acid kinase family Thert_01659 PF00202 Aminotransferase class-III Thert_01660 PF00117 Glutamine amidotransferase class-I Thert_01660 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Thert_01662 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Thert_01662 PF02142 MGS-like domain Thert_01662 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Thert_01663 PF00764 Arginosuccinate synthase Thert_01664 PF00206 Lyase Thert_01664 PF14698 Argininosuccinate lyase C-terminal Thert_01666 PF01022 Bacterial regulatory protein, arsR family Thert_01668 PF13686 DsrE/DsrF/DrsH-like family Thert_01669 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_01669 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Thert_01670 PF09335 SNARE associated Golgi protein Thert_01673 PF01566 Natural resistance-associated macrophage protein Thert_01674 PF06397 Desulfoferrodoxin, N-terminal domain Thert_01674 PF01880 Desulfoferrodoxin Thert_01675 PF00206 Lyase Thert_01675 PF10415 Fumarase C C-terminus Thert_01677 PF01926 50S ribosome-binding GTPase Thert_01677 PF12631 MnmE helical domain Thert_01677 PF10396 GTP-binding protein TrmE N-terminus Thert_01680 PF03819 MazG nucleotide pyrophosphohydrolase domain Thert_01680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thert_01683 PF00216 Bacterial DNA-binding protein Thert_01684 PF01479 S4 domain Thert_01686 PF08486 Stage II sporulation protein Thert_01687 PF07873 YabP family Thert_01689 PF02833 DHHA2 domain Thert_01689 PF07085 DRTGG domain Thert_01689 PF00571 CBS domain Thert_01689 PF01368 DHH family Thert_01693 PF00575 S1 RNA binding domain Thert_01694 PF02541 Ppx/GppA phosphatase family Thert_01694 PF01761 3-dehydroquinate synthase Thert_01696 PF02796 Helix-turn-helix domain of resolvase Thert_01696 PF00239 Resolvase, N terminal domain Thert_01705 PF01381 Helix-turn-helix Thert_01710 PF01232 Mannitol dehydrogenase Rossmann domain Thert_01710 PF08125 Mannitol dehydrogenase C-terminal domain Thert_01711 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_01711 PF02378 Phosphotransferase system, EIIC Thert_01725 PF08220 DeoR-like helix-turn-helix domain Thert_01725 PF00455 DeoR C terminal sensor domain Thert_01727 PF00834 Ribulose-phosphate 3 epimerase family Thert_01728 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_01730 PF00365 Phosphofructokinase Thert_01735 PF00456 Transketolase, thiamine diphosphate binding domain Thert_01736 PF02779 Transketolase, pyrimidine binding domain Thert_01736 PF02780 Transketolase, C-terminal domain Thert_01738 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thert_01739 PF00834 Ribulose-phosphate 3 epimerase family Thert_01740 PF02502 Ribose/Galactose Isomerase Thert_01741 PF00923 Transaldolase/Fructose-6-phosphate aldolase Thert_01754 PF06782 Uncharacterised protein family (UPF0236) Thert_01758 PF12146 Serine aminopeptidase, S33 Thert_01768 PF13276 HTH-like domain Thert_01768 PF00665 Integrase core domain Thert_01768 PF13333 Integrase core domain Thert_01773 PF02810 SEC-C motif Thert_01773 PF07516 SecA Wing and Scaffold domain Thert_01773 PF01043 SecA preprotein cross-linking domain Thert_01773 PF07517 SecA DEAD-like domain Thert_01774 PF02558 Ketopantoate reductase PanE/ApbA Thert_01774 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Thert_01776 PF01520 N-acetylmuramoyl-L-alanine amidase Thert_01778 PF00860 Permease family Thert_01782 PF00005 ABC transporter Thert_01784 PF00529 HlyD membrane-fusion protein of T1SS Thert_01784 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Thert_01785 PF00440 Bacterial regulatory proteins, tetR family Thert_01785 PF08359 YsiA-like protein, C-terminal region Thert_01786 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thert_01786 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Thert_01786 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Thert_01786 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Thert_01786 PF10371 Domain of unknown function Thert_01795 PF00005 ABC transporter Thert_01797 PF08281 Sigma-70, region 4 Thert_01800 PF05167 Uncharacterised ACR (DUF711) Thert_01803 PF13847 Methyltransferase domain Thert_01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_01808 PF08241 Methyltransferase domain Thert_01809 PF07228 Stage II sporulation protein E (SpoIIE) Thert_01812 PF01171 PP-loop family Thert_01812 PF11734 TilS substrate C-terminal domain Thert_01814 PF00004 ATPase family associated with various cellular activities (AAA) Thert_01814 PF01434 Peptidase family M41 Thert_01814 PF06480 FtsH Extracellular Thert_01814 PF17862 AAA+ lid domain Thert_01818 PF00512 His Kinase A (phospho-acceptor) domain Thert_01818 PF00989 PAS fold Thert_01818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01819 PF01268 Formate--tetrahydrofolate ligase Thert_01821 PF01039 Carboxyl transferase domain Thert_01823 PF00364 Biotin-requiring enzyme Thert_01824 PF12822 ECF transporter, substrate-specific component Thert_01826 PF03309 Type III pantothenate kinase Thert_01830 PF03323 Bacillus/Clostridium GerA spore germination protein Thert_01832 PF05504 Spore germination B3/ GerAC like, C-terminal Thert_01836 PF00202 Aminotransferase class-III Thert_01837 PF01272 Transcription elongation factor, GreA/GreB, C-term Thert_01837 PF03449 Transcription elongation factor, N-terminal Thert_01838 PF01336 OB-fold nucleic acid binding domain Thert_01838 PF00152 tRNA synthetases class II (D, K and N) Thert_01840 PF01227 GTP cyclohydrolase I Thert_01841 PF00809 Pterin binding enzyme Thert_01842 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Thert_01843 PF01242 6-pyruvoyl tetrahydropterin synthase Thert_01844 PF17746 SfsA N-terminal OB domain Thert_01844 PF03749 Sugar fermentation stimulation protein RE domain Thert_01845 PF05979 Bacterial protein of unknown function (DUF896) Thert_01846 PF00202 Aminotransferase class-III Thert_01848 PF02867 Ribonucleotide reductase, barrel domain Thert_01848 PF03477 ATP cone domain Thert_01848 PF00317 Ribonucleotide reductase, all-alpha domain Thert_01850 PF00990 Diguanylate cyclase, GGDEF domain Thert_01852 PF00874 PRD domain Thert_01852 PF05043 Mga helix-turn-helix domain Thert_01852 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_01852 PF08279 HTH domain Thert_01853 PF02378 Phosphotransferase system, EIIC Thert_01853 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_01853 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_01854 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Thert_01854 PF02378 Phosphotransferase system, EIIC Thert_01854 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_01855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_01857 PF00391 PEP-utilising enzyme, mobile domain Thert_01857 PF05524 PEP-utilising enzyme, N-terminal Thert_01857 PF02896 PEP-utilising enzyme, TIM barrel domain Thert_01858 PF14492 Elongation Factor G, domain II Thert_01858 PF03144 Elongation factor Tu domain 2 Thert_01858 PF00009 Elongation factor Tu GTP binding domain Thert_01858 PF03764 Elongation factor G, domain IV Thert_01858 PF00679 Elongation factor G C-terminus Thert_01860 PF03949 Malic enzyme, NAD binding domain Thert_01860 PF00390 Malic enzyme, N-terminal domain Thert_01862 PF17727 CtsR C-terminal dimerization domain Thert_01862 PF05848 CtsR N-terminal HTH domain Thert_01863 PF02151 UvrB/uvrC motif Thert_01864 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Thert_01867 PF07724 AAA domain (Cdc48 subfamily) Thert_01867 PF17871 AAA lid domain Thert_01867 PF02861 Clp amino terminal domain, pathogenicity island component Thert_01867 PF10431 C-terminal, D2-small domain, of ClpB protein Thert_01867 PF00004 ATPase family associated with various cellular activities (AAA) Thert_01868 PF18073 Rubredoxin metal binding domain Thert_01871 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Thert_01873 PF02542 YgbB family Thert_01874 PF03129 Anticodon binding domain Thert_01874 PF04073 Aminoacyl-tRNA editing domain Thert_01874 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Thert_01876 PF00749 tRNA synthetases class I (E and Q), catalytic domain Thert_01877 PF00132 Bacterial transferase hexapeptide (six repeats) Thert_01878 PF09190 DALR domain Thert_01878 PF01406 tRNA synthetases class I (C) catalytic domain Thert_01879 PF00636 Ribonuclease III domain Thert_01880 PF00588 SpoU rRNA Methylase family Thert_01880 PF08032 RNA 2'-O ribose methyltransferase substrate binding Thert_01881 PF05991 YacP-like NYN domain Thert_01882 PF04542 Sigma-70 region 2 Thert_01882 PF08281 Sigma-70, region 4 Thert_01884 PF03143 Elongation factor Tu C-terminal domain Thert_01884 PF03144 Elongation factor Tu domain 2 Thert_01884 PF00009 Elongation factor Tu GTP binding domain Thert_01885 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Thert_01886 PF00467 KOW motif Thert_01886 PF02357 Transcription termination factor nusG Thert_01887 PF03946 Ribosomal protein L11, N-terminal domain Thert_01887 PF00298 Ribosomal protein L11, RNA binding domain Thert_01889 PF00687 Ribosomal protein L1p/L10e family Thert_01891 PF00466 Ribosomal protein L10 Thert_01892 PF16320 Ribosomal protein L7/L12 dimerisation domain Thert_01892 PF00542 Ribosomal protein L7/L12 C-terminal domain Thert_01895 PF04560 RNA polymerase Rpb2, domain 7 Thert_01895 PF04563 RNA polymerase beta subunit Thert_01895 PF00562 RNA polymerase Rpb2, domain 6 Thert_01895 PF10385 RNA polymerase beta subunit external 1 domain Thert_01895 PF04565 RNA polymerase Rpb2, domain 3 Thert_01895 PF04561 RNA polymerase Rpb2, domain 2 Thert_01898 PF05000 RNA polymerase Rpb1, domain 4 Thert_01898 PF00623 RNA polymerase Rpb1, domain 2 Thert_01898 PF04997 RNA polymerase Rpb1, domain 1 Thert_01898 PF04998 RNA polymerase Rpb1, domain 5 Thert_01898 PF04983 RNA polymerase Rpb1, domain 3 Thert_01899 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Thert_01900 PF00164 Ribosomal protein S12/S23 Thert_01901 PF00177 Ribosomal protein S7p/S5e Thert_01903 PF14492 Elongation Factor G, domain II Thert_01903 PF03764 Elongation factor G, domain IV Thert_01903 PF00009 Elongation factor Tu GTP binding domain Thert_01903 PF03144 Elongation factor Tu domain 2 Thert_01903 PF00679 Elongation factor G C-terminus Thert_01905 PF00009 Elongation factor Tu GTP binding domain Thert_01905 PF03144 Elongation factor Tu domain 2 Thert_01905 PF03143 Elongation factor Tu C-terminal domain Thert_01906 PF00338 Ribosomal protein S10p/S20e Thert_01907 PF00297 Ribosomal protein L3 Thert_01908 PF00573 Ribosomal protein L4/L1 family Thert_01909 PF00276 Ribosomal protein L23 Thert_01910 PF00181 Ribosomal Proteins L2, RNA binding domain Thert_01910 PF03947 Ribosomal Proteins L2, C-terminal domain Thert_01911 PF00203 Ribosomal protein S19 Thert_01912 PF00237 Ribosomal protein L22p/L17e Thert_01913 PF07650 KH domain Thert_01913 PF00189 Ribosomal protein S3, C-terminal domain Thert_01914 PF00252 Ribosomal protein L16p/L10e Thert_01915 PF00831 Ribosomal L29 protein Thert_01916 PF00366 Ribosomal protein S17 Thert_01917 PF00238 Ribosomal protein L14p/L23e Thert_01918 PF00467 KOW motif Thert_01918 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Thert_01919 PF00673 ribosomal L5P family C-terminus Thert_01919 PF00281 Ribosomal protein L5 Thert_01922 PF00410 Ribosomal protein S8 Thert_01923 PF00347 Ribosomal protein L6 Thert_01924 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Thert_01925 PF03719 Ribosomal protein S5, C-terminal domain Thert_01925 PF00333 Ribosomal protein S5, N-terminal domain Thert_01926 PF00327 Ribosomal protein L30p/L7e Thert_01927 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Thert_01928 PF00344 SecY translocase Thert_01929 PF05191 Adenylate kinase, active site lid Thert_01930 PF00557 Metallopeptidase family M24 Thert_01932 PF01176 Translation initiation factor 1A / IF-1 Thert_01933 PF00444 Ribosomal protein L36 Thert_01934 PF00416 Ribosomal protein S13/S18 Thert_01935 PF00411 Ribosomal protein S11 Thert_01936 PF00163 Ribosomal protein S4/S9 N-terminal domain Thert_01936 PF01479 S4 domain Thert_01937 PF01000 RNA polymerase Rpb3/RpoA insert domain Thert_01937 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Thert_01937 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Thert_01938 PF01196 Ribosomal protein L17 Thert_01939 PF00005 ABC transporter Thert_01940 PF00005 ABC transporter Thert_01941 PF02361 Cobalt transport protein Thert_01942 PF01416 tRNA pseudouridine synthase Thert_01943 PF00572 Ribosomal protein L13 Thert_01944 PF00380 Ribosomal protein S9/S16 Thert_01949 PF00158 Sigma-54 interaction domain Thert_01950 PF00456 Transketolase, thiamine diphosphate binding domain Thert_01951 PF02780 Transketolase, C-terminal domain Thert_01951 PF02779 Transketolase, pyrimidine binding domain Thert_01952 PF02502 Ribose/Galactose Isomerase Thert_01953 PF02811 PHP domain Thert_01955 PF01116 Fructose-bisphosphate aldolase class-II Thert_01956 PF00701 Dihydrodipicolinate synthetase family Thert_01958 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Thert_01958 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thert_01958 PF01842 ACT domain Thert_01960 PF00171 Aldehyde dehydrogenase family Thert_01961 PF00230 Major intrinsic protein Thert_01962 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_01962 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_01963 PF00072 Response regulator receiver domain Thert_01963 PF00196 Bacterial regulatory proteins, luxR family Thert_01964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_01964 PF06580 Histidine kinase Thert_01964 PF02743 Cache domain Thert_01964 PF00672 HAMP domain Thert_01966 PF00936 BMC domain Thert_01967 PF00936 BMC domain Thert_01968 PF02286 Dehydratase large subunit Thert_01969 PF02288 Dehydratase medium subunit Thert_01970 PF02287 Dehydratase small subunit Thert_01973 PF08841 Diol dehydratase reactivase ATPase-like domain Thert_01973 PF18427 DD-reactivating factor swiveling domain Thert_01977 PF00936 BMC domain Thert_01978 PF00936 BMC domain Thert_01979 PF06130 Phosphate propanoyltransferase Thert_01981 PF03319 Ethanolamine utilisation protein EutN/carboxysome Thert_01983 PF03928 Haem-degrading Thert_01985 PF00171 Aldehyde dehydrogenase family Thert_01987 PF00465 Iron-containing alcohol dehydrogenase Thert_01990 PF01380 SIS domain Thert_01990 PF01418 Helix-turn-helix domain, rpiR family Thert_01994 PF02056 Family 4 glycosyl hydrolase Thert_01994 PF11975 Family 4 glycosyl hydrolase C-terminal domain Thert_01995 PF00367 phosphotransferase system, EIIB Thert_01995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thert_01995 PF02378 Phosphotransferase system, EIIC Thert_01996 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thert_01998 PF02595 Glycerate kinase family Thert_02002 PF08275 DNA primase catalytic core, N-terminal domain Thert_02002 PF01807 CHC2 zinc finger Thert_02002 PF08278 DNA primase DnaG DnaB-binding Thert_02002 PF10410 DnaB-helicase binding domain of primase Thert_02017 PF14659 Phage integrase, N-terminal SAM-like domain Thert_02017 PF00589 Phage integrase family Thert_02020 PF00005 ABC transporter Thert_02021 PF02687 FtsX-like permease family Thert_02021 PF00005 ABC transporter Thert_02021 PF12704 MacB-like periplasmic core domain Thert_02022 PF00465 Iron-containing alcohol dehydrogenase Thert_02023 PF02511 Thymidylate synthase complementing protein Thert_02027 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_02029 PF05257 CHAP domain Thert_02029 PF01476 LysM domain Thert_02031 PF08239 Bacterial SH3 domain Thert_02031 PF01520 N-acetylmuramoyl-L-alanine amidase Thert_02032 PF07726 ATPase family associated with various cellular activities (AAA) Thert_02032 PF17863 AAA lid domain Thert_02035 PF01841 Transglutaminase-like superfamily Thert_02035 PF13559 Domain of unknown function (DUF4129) Thert_02035 PF11992 Domain of unknown function (DUF3488) Thert_02037 PF02457 DisA bacterial checkpoint controller nucleotide-binding Thert_02046 PF01553 Acyltransferase Thert_02047 PF11799 impB/mucB/samB family C-terminal domain Thert_02047 PF00817 impB/mucB/samB family Thert_02048 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thert_02048 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thert_02048 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thert_02048 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thert_02050 PF01380 SIS domain Thert_02077 PF02384 N-6 DNA Methylase Thert_02077 PF12161 HsdM N-terminal domain Thert_02083 PF08494 DEAD/H associated Thert_02083 PF00271 Helicase conserved C-terminal domain Thert_02083 PF00270 DEAD/DEAH box helicase Thert_02089 PF03747 ADP-ribosylglycohydrolase Thert_02094 PF13333 Integrase core domain Thert_02094 PF00665 Integrase core domain Thert_02094 PF13276 HTH-like domain Thert_02099 PF00589 Phage integrase family Thert_02099 PF02899 Phage integrase, N-terminal SAM-like domain Thert_02103 PF08721 TnsA endonuclease C terminal Thert_02103 PF08722 TnsA endonuclease N terminal Thert_02104 PF00665 Integrase core domain Thert_02105 PF11426 Tn7 transposition regulator TnsC Thert_02105 PF13401 AAA domain Thert_02121 PF00069 Protein kinase domain Thert_02121 PF03793 PASTA domain Thert_02124 PF03747 ADP-ribosylglycohydrolase Thert_02126 PF01381 Helix-turn-helix Thert_02135 PF01638 HxlR-like helix-turn-helix Thert_02148 PF00583 Acetyltransferase (GNAT) family Thert_02153 PF01814 Hemerythrin HHE cation binding domain Thert_02155 PF13538 UvrD-like helicase C-terminal domain Thert_02156 PF01894 Uncharacterised protein family UPF0047 Thert_02160 PF03853 YjeF-related protein N-terminus Thert_02160 PF01256 Carbohydrate kinase Thert_02163 PF01168 Alanine racemase, N-terminal domain Thert_02163 PF00842 Alanine racemase, C-terminal domain Thert_02165 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Thert_02169 PF03808 Glycosyl transferase WecB/TagA/CpsF family Thert_02170 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Thert_02170 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Thert_02172 PF02445 Quinolinate synthetase A protein Thert_02173 PF00890 FAD binding domain Thert_02173 PF02910 Fumarate reductase flavoprotein C-term Thert_02174 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Thert_02174 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Thert_02176 PF00301 Rubredoxin Thert_02177 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thert_02177 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thert_02181 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Thert_02181 PF17126 RsmF rRNA methyltransferase first C-terminal domain Thert_02181 PF01189 16S rRNA methyltransferase RsmB/F Thert_02183 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Thert_02183 PF06165 Glycosyltransferase family 36 Thert_02183 PF10091 Putative glucoamylase Thert_02184 PF00392 Bacterial regulatory proteins, gntR family Thert_02186 PF10086 YhfC intramembrane metalloprotease Thert_02188 PF16200 C-terminal region of band_7 Thert_02188 PF01145 SPFH domain / Band 7 family Thert_02190 PF13393 Histidyl-tRNA synthetase Thert_02191 PF01634 ATP phosphoribosyltransferase Thert_02192 PF00815 Histidinol dehydrogenase Thert_02193 PF00155 Aminotransferase class I and II Thert_02194 PF00475 Imidazoleglycerol-phosphate dehydratase Thert_02195 PF00117 Glutamine amidotransferase class-I Thert_02196 PF00977 Histidine biosynthesis protein Thert_02198 PF00977 Histidine biosynthesis protein Thert_02199 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Thert_02199 PF01502 Phosphoribosyl-AMP cyclohydrolase Thert_02200 PF02585 GlcNAc-PI de-N-acetylase Thert_02201 PF01244 Membrane dipeptidase (Peptidase family M19) Thert_02202 PF00464 Serine hydroxymethyltransferase Thert_02207 PF00483 Nucleotidyl transferase Thert_02210 PF01522 Polysaccharide deacetylase Thert_02212 PF01022 Bacterial regulatory protein, arsR family Thert_02216 PF02660 Glycerol-3-phosphate acyltransferase Thert_02217 PF01451 Low molecular weight phosphotyrosine protein phosphatase Thert_02219 PF00230 Major intrinsic protein Thert_02220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_02220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_02222 PF01266 FAD dependent oxidoreductase Thert_02223 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_02223 PF04324 BFD-like [2Fe-2S] binding domain Thert_02226 PF00989 PAS fold Thert_02226 PF02954 Bacterial regulatory protein, Fis family Thert_02226 PF00158 Sigma-54 interaction domain Thert_02227 PF02733 Dak1 domain Thert_02228 PF02734 DAK2 domain Thert_02229 PF03610 PTS system fructose IIA component Thert_02231 PF00012 Hsp70 protein Thert_02236 PF00004 ATPase family associated with various cellular activities (AAA) Thert_02236 PF17862 AAA+ lid domain Thert_02236 PF01434 Peptidase family M41 Thert_02239 PF02491 SHS2 domain inserted in FTSA Thert_02244 PF00005 ABC transporter Thert_02246 PF14693 Ribosomal protein TL5, C-terminal domain Thert_02246 PF01386 Ribosomal L25p family Thert_02247 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Thert_02247 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Thert_02250 PF00005 ABC transporter Thert_02250 PF03459 TOBE domain Thert_02250 PF17912 MalK OB fold domain Thert_02254 PF00037 4Fe-4S binding domain Thert_02254 PF13247 4Fe-4S dicluster domain Thert_02255 PF13187 4Fe-4S dicluster domain Thert_02255 PF01645 Conserved region in glutamate synthase Thert_02256 PF00310 Glutamine amidotransferases class-II Thert_02257 PF17853 GGDEF-like domain Thert_02257 PF13556 PucR C-terminal helix-turn-helix domain Thert_02257 PF05651 Putative sugar diacid recognition Thert_02258 PF00005 ABC transporter Thert_02259 PF18075 FtsX extracellular domain Thert_02259 PF02687 FtsX-like permease family Thert_02261 PF04225 Opacity-associated protein A LysM-like domain Thert_02261 PF01551 Peptidase family M23 Thert_02262 PF03572 Peptidase family S41 Thert_02262 PF13180 PDZ domain Thert_02263 PF17820 PDZ domain Thert_02264 PF04029 2-phosphosulpholactate phosphatase Thert_02265 PF02151 UvrB/uvrC motif Thert_02265 PF04851 Type III restriction enzyme, res subunit Thert_02265 PF12344 Ultra-violet resistance protein B Thert_02265 PF00271 Helicase conserved C-terminal domain Thert_02265 PF17757 UvrB interaction domain Thert_02267 PF17760 UvrA interaction domain Thert_02267 PF17755 UvrA DNA-binding domain Thert_02268 PF16697 Inner membrane component of T3SS, cytoplasmic domain Thert_02269 PF01098 Cell cycle protein Thert_02270 PF00905 Penicillin binding protein transpeptidase domain Thert_02271 PF01541 GIY-YIG catalytic domain Thert_02271 PF02151 UvrB/uvrC motif Thert_02271 PF08459 UvrC Helix-hairpin-helix N-terminal Thert_02272 PF02237 Biotin protein ligase C terminal domain Thert_02272 PF03099 Biotin/lipoate A/B protein ligase family Thert_02272 PF08279 HTH domain Thert_02273 PF03123 CAT RNA binding domain Thert_02273 PF00874 PRD domain Thert_02274 PF00367 phosphotransferase system, EIIB Thert_02274 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Thert_02274 PF02378 Phosphotransferase system, EIIC Thert_02275 PF00232 Glycosyl hydrolase family 1 Thert_02276 PF07475 HPr Serine kinase C-terminal domain Thert_02276 PF02603 HPr Serine kinase N terminus Thert_02277 PF02811 PHP domain Thert_02278 PF00480 ROK family Thert_02279 PF00501 AMP-binding enzyme Thert_02279 PF13193 AMP-binding enzyme C-terminal domain Thert_02280 PF00356 Bacterial regulatory proteins, lacI family Thert_02281 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thert_02281 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thert_02286 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thert_02286 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thert_02287 PF02837 Glycosyl hydrolases family 2, sugar binding domain Thert_02287 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain Thert_02287 PF00703 Glycosyl hydrolases family 2 Thert_02289 PF00158 Sigma-54 interaction domain Thert_02289 PF00874 PRD domain Thert_02289 PF03610 PTS system fructose IIA component Thert_02290 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Thert_02291 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Thert_02292 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Thert_02293 PF02378 Phosphotransferase system, EIIC Thert_02295 PF00232 Glycosyl hydrolase family 1 Thert_02297 PF00356 Bacterial regulatory proteins, lacI family Thert_02299 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02300 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02305 PF02449 Beta-galactosidase Thert_02305 PF08532 Beta-galactosidase trimerisation domain Thert_02305 PF08533 Beta-galactosidase C-terminal domain Thert_02306 PF01055 Glycosyl hydrolases family 31 Thert_02306 PF13802 Galactose mutarotase-like Thert_02307 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Thert_02310 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02311 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02312 PF01229 Glycosyl hydrolases family 39 Thert_02313 PF00144 Beta-lactamase Thert_02313 PF07930 D-aminopeptidase, domain B Thert_02315 PF07944 Beta-L-arabinofuranosidase, GH127 Thert_02316 PF02610 L-arabinose isomerase Thert_02316 PF11762 L-arabinose isomerase C-terminal domain Thert_02317 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Thert_02317 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Thert_02318 PF00596 Class II Aldolase and Adducin N-terminal domain Thert_02320 PF00392 Bacterial regulatory proteins, gntR family Thert_02321 PF13685 Iron-containing alcohol dehydrogenase Thert_02328 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Thert_02328 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Thert_02329 PF00288 GHMP kinases N terminal domain Thert_02329 PF08544 GHMP kinases C terminal Thert_02329 PF10509 Galactokinase galactose-binding signature Thert_02330 PF16363 GDP-mannose 4,6 dehydratase Thert_02332 PF00480 ROK family Thert_02332 PF01325 Iron dependent repressor, N-terminal DNA binding domain Thert_02333 PF13180 PDZ domain Thert_02334 PF00486 Transcriptional regulatory protein, C terminal Thert_02334 PF00072 Response regulator receiver domain Thert_02338 PF01547 Bacterial extracellular solute-binding protein Thert_02340 PF01522 Polysaccharide deacetylase Thert_02341 PF02424 ApbE family Thert_02343 PF03793 PASTA domain Thert_02343 PF00905 Penicillin binding protein transpeptidase domain Thert_02343 PF03717 Penicillin-binding Protein dimerisation domain Thert_02344 PF04675 DNA ligase N terminus Thert_02344 PF01068 ATP dependent DNA ligase domain Thert_02344 PF04679 ATP dependent DNA ligase C terminal region Thert_02345 PF02735 Ku70/Ku80 beta-barrel domain Thert_02346 PF00877 NlpC/P60 family Thert_02346 PF01476 LysM domain Thert_02347 PF00140 Sigma-70 factor, region 1.2 Thert_02347 PF04542 Sigma-70 region 2 Thert_02347 PF04539 Sigma-70 region 3 Thert_02347 PF04545 Sigma-70, region 4 Thert_02351 PF01757 Acyltransferase family Thert_02353 PF13520 Amino acid permease Thert_02359 PF04820 Tryptophan halogenase Thert_02360 PF00403 Heavy-metal-associated domain Thert_02363 PF00291 Pyridoxal-phosphate dependent enzyme Thert_02366 PF00113 Enolase, C-terminal TIM barrel domain Thert_02366 PF03952 Enolase, N-terminal domain Thert_02367 PF07690 Major Facilitator Superfamily Thert_02370 PF01306 LacY proton/sugar symporter Thert_02377 PF00356 Bacterial regulatory proteins, lacI family Thert_02383 PF00294 pfkB family carbohydrate kinase Thert_02384 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02386 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02389 PF00251 Glycosyl hydrolases family 32 N-terminal domain Thert_02389 PF08244 Glycosyl hydrolases family 32 C terminal Thert_02404 PF14791 DNA polymerase beta thumb Thert_02404 PF14716 Helix-hairpin-helix domain Thert_02404 PF02811 PHP domain Thert_02406 PF01053 Cys/Met metabolism PLP-dependent enzyme Thert_02409 PF01790 Prolipoprotein diacylglyceryl transferase Thert_02411 PF01551 Peptidase family M23 Thert_02411 PF01476 LysM domain Thert_02417 PF01566 Natural resistance-associated macrophage protein Thert_02420 PF01209 ubiE/COQ5 methyltransferase family Thert_02422 PF02683 Cytochrome C biogenesis protein transmembrane region Thert_02426 PF00512 His Kinase A (phospho-acceptor) domain Thert_02426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_02426 PF00989 PAS fold Thert_02427 PF00072 Response regulator receiver domain Thert_02427 PF00158 Sigma-54 interaction domain Thert_02427 PF02954 Bacterial regulatory protein, Fis family Thert_02432 PF00403 Heavy-metal-associated domain Thert_02434 PF01565 FAD binding domain Thert_02434 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Thert_02437 PF03668 P-loop ATPase protein family Thert_02439 PF01933 Uncharacterised protein family UPF0052 Thert_02440 PF13416 Bacterial extracellular solute-binding protein Thert_02441 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02442 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02444 PF01547 Bacterial extracellular solute-binding protein Thert_02445 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02447 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02451 PF13464 Domain of unknown function (DUF4115) Thert_02452 PF02903 Alpha amylase, N-terminal ig-like domain Thert_02452 PF00128 Alpha amylase, catalytic domain Thert_02454 PF02650 WhiA C-terminal HTH domain Thert_02454 PF14527 WhiA LAGLIDADG-like domain Thert_02454 PF10298 WhiA N-terminal LAGLIDADG-like domain Thert_02455 PF00381 PTS HPr component phosphorylation site Thert_02456 PF03061 Thioesterase superfamily Thert_02456 PF00392 Bacterial regulatory proteins, gntR family Thert_02456 PF00571 CBS domain Thert_02456 PF07085 DRTGG domain Thert_02458 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thert_02458 PF14579 Helix-hairpin-helix motif Thert_02458 PF02811 PHP domain Thert_02458 PF01336 OB-fold nucleic acid binding domain Thert_02458 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thert_02460 PF00365 Phosphofructokinase Thert_02461 PF02887 Pyruvate kinase, alpha/beta domain Thert_02461 PF00224 Pyruvate kinase, barrel domain Thert_02461 PF00391 PEP-utilising enzyme, mobile domain Thert_02464 PF00723 Glycosyl hydrolases family 15 Thert_02464 PF09137 Glucodextranase, domain N Thert_02465 PF05958 tRNA (Uracil-5-)-methyltransferase Thert_02465 PF01938 TRAM domain Thert_02473 PF00005 ABC transporter Thert_02486 PF09383 NIL domain Thert_02486 PF00005 ABC transporter Thert_02487 PF00072 Response regulator receiver domain Thert_02487 PF00486 Transcriptional regulatory protein, C terminal Thert_02498 PF01555 DNA methylase Thert_02499 PF01555 DNA methylase Thert_02507 PF03354 Phage Terminase Thert_02509 PF04860 Phage portal protein Thert_02529 PF00550 Phosphopantetheine attachment site Thert_02530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thert_02530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thert_02534 PF00005 ABC transporter Thert_02535 PF01047 MarR family Thert_02542 PF05105 Bacteriophage holin family Thert_02545 PF01510 N-acetylmuramoyl-L-alanine amidase Thert_02545 PF01476 LysM domain Thert_02545 PF01471 Putative peptidoglycan binding domain Thert_02547 PF00239 Resolvase, N terminal domain Thert_02547 PF02796 Helix-turn-helix domain of resolvase Thert_02551 PF07508 Recombinase Thert_02551 PF13408 Recombinase zinc beta ribbon domain Thert_02565 PF07556 Protein of unknown function (DUF1538) Thert_02568 PF00486 Transcriptional regulatory protein, C terminal Thert_02568 PF00072 Response regulator receiver domain Thert_02569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_02569 PF00512 His Kinase A (phospho-acceptor) domain Thert_02578 PF08361 MAATS-type transcriptional repressor, C-terminal region Thert_02578 PF00440 Bacterial regulatory proteins, tetR family Thert_02579 PF00391 PEP-utilising enzyme, mobile domain Thert_02579 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thert_02581 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Thert_02581 PF00391 PEP-utilising enzyme, mobile domain Thert_02582 PF00881 Nitroreductase family Thert_02588 PF13307 Helicase C-terminal domain Thert_02588 PF06733 DEAD_2 Thert_02589 PF01648 4'-phosphopantetheinyl transferase superfamily Thert_02590 PF07634 RtxA repeat Thert_02590 PF11713 Peptidase C80 family Thert_02590 PF16671 Actin cross-linking domain Thert_02590 PF12146 Serine aminopeptidase, S33 Thert_02590 PF11647 Membrane Localization Domain Thert_02591 PF07687 Peptidase dimerisation domain Thert_02591 PF01546 Peptidase family M20/M25/M40 Thert_02592 PF01479 S4 domain Thert_02592 PF00163 Ribosomal protein S4/S9 N-terminal domain Thert_02593 PF00881 Nitroreductase family Thert_02596 PF00342 Phosphoglucose isomerase Thert_02599 PF07694 5TMR of 5TMR-LYT Thert_02599 PF06580 Histidine kinase Thert_02599 PF13492 GAF domain Thert_02599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_02600 PF04397 LytTr DNA-binding domain Thert_02600 PF00072 Response regulator receiver domain Thert_02602 PF02554 Carbon starvation protein CstA Thert_02603 PF13375 RnfC Barrel sandwich hybrid domain Thert_02603 PF13237 4Fe-4S dicluster domain Thert_02603 PF10531 SLBB domain Thert_02603 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Thert_02605 PF03116 NQR2, RnfD, RnfE family Thert_02607 PF04205 FMN-binding domain Thert_02608 PF02508 Rnf-Nqr subunit, membrane protein Thert_02609 PF02508 Rnf-Nqr subunit, membrane protein Thert_02610 PF04060 Putative Fe-S cluster Thert_02610 PF13187 4Fe-4S dicluster domain Thert_02610 PF00037 4Fe-4S binding domain Thert_02615 PF02574 Homocysteine S-methyltransferase Thert_02615 PF02219 Methylenetetrahydrofolate reductase Thert_02617 PF02310 B12 binding domain Thert_02617 PF02607 B12 binding domain Thert_02617 PF02965 Vitamin B12 dependent methionine synthase, activation domain Thert_02617 PF00809 Pterin binding enzyme Thert_02617 PF02574 Homocysteine S-methyltransferase Thert_02618 PF05067 Manganese containing catalase Thert_02619 PF12652 CotJB protein Thert_02622 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Thert_02623 PF05958 tRNA (Uracil-5-)-methyltransferase Thert_02623 PF01938 TRAM domain Thert_02625 PF00072 Response regulator receiver domain Thert_02625 PF00486 Transcriptional regulatory protein, C terminal Thert_02626 PF16736 Single Cache-like Thert_02626 PF00989 PAS fold Thert_02626 PF00512 His Kinase A (phospho-acceptor) domain Thert_02626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_02633 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Thert_02636 PF03358 NADPH-dependent FMN reductase Thert_02637 PF00465 Iron-containing alcohol dehydrogenase Thert_02640 PF02627 Carboxymuconolactone decarboxylase family Thert_02641 PF03079 ARD/ARD' family Thert_02644 PF00248 Aldo/keto reductase family Thert_02650 PF13411 MerR HTH family regulatory protein Thert_02654 PF01261 Xylose isomerase-like TIM barrel Thert_02655 PF00753 Metallo-beta-lactamase superfamily Thert_02656 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Thert_02656 PF05698 Bacterial trigger factor protein (TF) C-terminus Thert_02656 PF05697 Bacterial trigger factor protein (TF) Thert_02657 PF00574 Clp protease Thert_02658 PF07724 AAA domain (Cdc48 subfamily) Thert_02658 PF10431 C-terminal, D2-small domain, of ClpB protein Thert_02658 PF06689 ClpX C4-type zinc finger Thert_02662 PF00004 ATPase family associated with various cellular activities (AAA) Thert_02662 PF05362 Lon protease (S16) C-terminal proteolytic domain Thert_02662 PF02190 ATP-dependent protease La (LON) substrate-binding domain Thert_02663 PF01926 50S ribosome-binding GTPase Thert_02664 PF02386 Cation transport protein Thert_02665 PF02254 TrkA-N domain Thert_02665 PF02080 TrkA-C domain Thert_02666 PF00119 ATP synthase A chain Thert_02667 PF00137 ATP synthase subunit C Thert_02668 PF00430 ATP synthase B/B' CF(0) Thert_02669 PF00213 ATP synthase delta (OSCP) subunit Thert_02670 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thert_02670 PF00306 ATP synthase alpha/beta chain, C terminal domain Thert_02670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thert_02671 PF00231 ATP synthase Thert_02672 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thert_02672 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thert_02673 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Thert_02673 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Thert_02678 PF00795 Carbon-nitrogen hydrolase Thert_02678 PF02540 NAD synthase Thert_02680 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02681 PF00005 ABC transporter Thert_02684 PF01680 SOR/SNZ family Thert_02685 PF01174 SNO glutamine amidotransferase family Thert_02699 PF00535 Glycosyl transferase family 2 Thert_02700 PF13439 Glycosyltransferase Family 4 Thert_02700 PF00534 Glycosyl transferases group 1 Thert_02701 PF02397 Bacterial sugar transferase Thert_02703 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Thert_02704 PF02719 Polysaccharide biosynthesis protein Thert_02713 PF00483 Nucleotidyl transferase Thert_02713 PF01050 Mannose-6-phosphate isomerase Thert_02717 PF01050 Mannose-6-phosphate isomerase Thert_02717 PF00483 Nucleotidyl transferase Thert_02724 PF00271 Helicase conserved C-terminal domain Thert_02724 PF12419 SNF2 Helicase protein Thert_02724 PF00176 SNF2 family N-terminal domain Thert_02727 PF02371 Transposase IS116/IS110/IS902 family Thert_02727 PF01548 Transposase Thert_02731 PF01966 HD domain Thert_02746 PF01869 BadF/BadG/BcrA/BcrD ATPase family Thert_02748 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Thert_02748 PF00270 DEAD/DEAH box helicase Thert_02748 PF17191 RecG wedge domain Thert_02751 PF17179 4Fe-4S dicluster domain Thert_02752 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thert_02752 PF00175 Oxidoreductase NAD-binding domain Thert_02753 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thert_02753 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thert_02753 PF13187 4Fe-4S dicluster domain Thert_02756 PF01964 Radical SAM ThiC family Thert_02760 PF07729 FCD domain Thert_02760 PF00392 Bacterial regulatory proteins, gntR family Thert_02761 PF03786 D-mannonate dehydratase (UxuA) Thert_02762 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02763 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02765 PF00331 Glycosyl hydrolase family 10 Thert_02766 PF07488 Glycosyl hydrolase family 67 middle domain Thert_02766 PF07477 Glycosyl hydrolase family 67 C-terminus Thert_02766 PF03648 Glycosyl hydrolase family 67 N-terminus Thert_02767 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Thert_02767 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Thert_02770 PF03512 Glycosyl hydrolase family 52 Thert_02771 PF01229 Glycosyl hydrolases family 39 Thert_02772 PF05448 Acetyl xylan esterase (AXE1) Thert_02773 PF12833 Helix-turn-helix domain Thert_02773 PF00072 Response regulator receiver domain Thert_02773 PF12833 Helix-turn-helix domain Thert_02773 PF00072 Response regulator receiver domain Thert_02774 PF06580 Histidine kinase Thert_02774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_02774 PF07694 5TMR of 5TMR-LYT Thert_02778 PF13416 Bacterial extracellular solute-binding protein Thert_02779 PF01547 Bacterial extracellular solute-binding protein Thert_02780 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02781 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02788 PF00005 ABC transporter Thert_02791 PF01361 Tautomerase enzyme Thert_02797 PF04754 Putative transposase, YhgA-like Thert_02798 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Thert_02798 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Thert_02798 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thert_02798 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Thert_02800 PF02706 Chain length determinant protein Thert_02800 PF13807 G-rich domain on putative tyrosine kinase Thert_02801 PF13614 AAA domain Thert_02805 PF00483 Nucleotidyl transferase Thert_02809 PF00128 Alpha amylase, catalytic domain Thert_02809 PF02903 Alpha amylase, N-terminal ig-like domain Thert_02809 PF00395 S-layer homology domain Thert_02814 PF00689 Cation transporting ATPase, C-terminus Thert_02814 PF00690 Cation transporter/ATPase, N-terminus Thert_02817 PF00334 Nucleoside diphosphate kinase Thert_02820 PF10997 Alternate to MurJ Thert_02822 PF00258 Flavodoxin Thert_02822 PF00753 Metallo-beta-lactamase superfamily Thert_02824 PF18267 Rubredoxin NAD+ reductase C-terminal domain Thert_02824 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_02824 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Thert_02824 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Thert_02824 PF04324 BFD-like [2Fe-2S] binding domain Thert_02826 PF01569 PAP2 superfamily Thert_02828 PF01066 CDP-alcohol phosphatidyltransferase Thert_02831 PF02540 NAD synthase Thert_02832 PF00731 AIR carboxylase Thert_02833 PF01969 Protein of unknown function DUF111 Thert_02834 PF01969 Protein of unknown function DUF111 Thert_02835 PF02632 BioY family Thert_02836 PF10458 Valyl tRNA synthetase tRNA binding arm Thert_02836 PF00133 tRNA synthetases class I (I, L, M and V) Thert_02836 PF08264 Anticodon-binding domain of tRNA Thert_02838 PF02875 Mur ligase family, glutamate ligase domain Thert_02838 PF08245 Mur ligase middle domain Thert_02845 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thert_02846 PF08331 Domain of unknown function (DUF1730) Thert_02848 PF00356 Bacterial regulatory proteins, lacI family Thert_02849 PF03636 Glycosyl hydrolase family 65, N-terminal domain Thert_02849 PF03632 Glycosyl hydrolase family 65 central catalytic domain Thert_02849 PF03633 Glycosyl hydrolase family 65, C-terminal domain Thert_02850 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02851 PF00356 Bacterial regulatory proteins, lacI family Thert_02852 PF13416 Bacterial extracellular solute-binding protein Thert_02853 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02854 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02855 PF03633 Glycosyl hydrolase family 65, C-terminal domain Thert_02855 PF03636 Glycosyl hydrolase family 65, N-terminal domain Thert_02855 PF03632 Glycosyl hydrolase family 65 central catalytic domain Thert_02856 PF13419 Haloacid dehalogenase-like hydrolase Thert_02857 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain Thert_02857 PF01522 Polysaccharide deacetylase Thert_02859 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Thert_02861 PF14602 Hexapeptide repeat of succinyl-transferase Thert_02861 PF00132 Bacterial transferase hexapeptide (six repeats) Thert_02861 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Thert_02862 PF05173 Dihydrodipicolinate reductase, C-terminus Thert_02862 PF01113 Dihydrodipicolinate reductase, N-terminus Thert_02863 PF00701 Dihydrodipicolinate synthetase family Thert_02864 PF01118 Semialdehyde dehydrogenase, NAD binding domain Thert_02864 PF02774 Semialdehyde dehydrogenase, dimerisation domain Thert_02868 PF03951 Glutamine synthetase, beta-Grasp domain Thert_02868 PF00120 Glutamine synthetase, catalytic domain Thert_02869 PF00072 Response regulator receiver domain Thert_02869 PF00990 Diguanylate cyclase, GGDEF domain Thert_02870 PF01820 D-ala D-ala ligase N-terminus Thert_02870 PF07478 D-ala D-ala ligase C-terminus Thert_02874 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_02875 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding Thert_02875 PF10518 TAT (twin-arginine translocation) pathway signal sequence Thert_02875 PF07992 Pyridine nucleotide-disulphide oxidoreductase Thert_02878 PF00348 Polyprenyl synthetase Thert_02879 PF01979 Amidohydrolase family Thert_02880 PF00155 Aminotransferase class I and II Thert_02885 PF00704 Glycosyl hydrolases family 18 Thert_02887 PF01476 LysM domain Thert_02887 PF01551 Peptidase family M23 Thert_02887 PF08525 Opacity-associated protein A N-terminal motif Thert_02891 PF03698 Uncharacterised protein family (UPF0180) Thert_02897 PF13439 Glycosyltransferase Family 4 Thert_02898 PF02583 Metal-sensitive transcriptional repressor Thert_02906 PF00266 Aminotransferase class-V Thert_02907 PF02926 THUMP domain Thert_02907 PF02568 Thiamine biosynthesis protein (ThiI) Thert_02908 PF01926 50S ribosome-binding GTPase Thert_02908 PF06071 Protein of unknown function (DUF933) Thert_02910 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Thert_02911 PF05193 Peptidase M16 inactive domain Thert_02912 PF00675 Insulinase (Peptidase family M16) Thert_02912 PF05193 Peptidase M16 inactive domain Thert_02913 PF02381 MraZ protein, putative antitoxin-like Thert_02914 PF01795 MraW methylase family Thert_02916 PF03717 Penicillin-binding Protein dimerisation domain Thert_02916 PF00905 Penicillin binding protein transpeptidase domain Thert_02916 PF03793 PASTA domain Thert_02917 PF08245 Mur ligase middle domain Thert_02917 PF02875 Mur ligase family, glutamate ligase domain Thert_02917 PF01225 Mur ligase family, catalytic domain Thert_02919 PF02875 Mur ligase family, glutamate ligase domain Thert_02919 PF01225 Mur ligase family, catalytic domain Thert_02919 PF08245 Mur ligase middle domain Thert_02920 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Thert_02920 PF00953 Glycosyl transferase family 4 Thert_02921 PF02875 Mur ligase family, glutamate ligase domain Thert_02921 PF08245 Mur ligase middle domain Thert_02922 PF01098 Cell cycle protein Thert_02923 PF03033 Glycosyltransferase family 28 N-terminal domain Thert_02923 PF04101 Glycosyltransferase family 28 C-terminal domain Thert_02924 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thert_02926 PF03799 Cell division protein FtsQ Thert_02926 PF08478 POTRA domain, FtsQ-type Thert_02927 PF05949 Bacterial protein of unknown function (DUF881) Thert_02928 PF06947 Protein of unknown function (DUF1290) Thert_02929 PF02491 SHS2 domain inserted in FTSA Thert_02930 PF00091 Tubulin/FtsZ family, GTPase domain Thert_02930 PF12327 FtsZ family, C-terminal domain Thert_02931 PF03419 Sporulation factor SpoIIGA Thert_02932 PF04545 Sigma-70, region 4 Thert_02932 PF04542 Sigma-70 region 2 Thert_02933 PF04545 Sigma-70, region 4 Thert_02933 PF04539 Sigma-70 region 3 Thert_02933 PF04542 Sigma-70 region 2 Thert_02934 PF05239 PRC-barrel domain Thert_02935 PF03477 ATP cone domain Thert_02936 PF00072 Response regulator receiver domain Thert_02936 PF00486 Transcriptional regulatory protein, C terminal Thert_02937 PF00512 His Kinase A (phospho-acceptor) domain Thert_02937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_02937 PF16736 Single Cache-like Thert_02937 PF00989 PAS fold Thert_02938 PF12849 PBP superfamily domain Thert_02939 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02940 PF00528 Binding-protein-dependent transport system inner membrane component Thert_02941 PF00005 ABC transporter Thert_02942 PF01895 PhoU domain Thert_02950 PF01926 50S ribosome-binding GTPase Thert_02950 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Thert_02951 PF02660 Glycerol-3-phosphate acyltransferase Thert_02953 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thert_02953 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Thert_02956 PF00392 Bacterial regulatory proteins, gntR family Thert_02956 PF07729 FCD domain Thert_02959 PF02652 L-lactate permease Thert_02961 PF01012 Electron transfer flavoprotein domain Thert_02962 PF00766 Electron transfer flavoprotein FAD-binding domain Thert_02962 PF01012 Electron transfer flavoprotein domain Thert_02965 PF02913 FAD linked oxidases, C-terminal domain Thert_02965 PF01565 FAD binding domain Thert_02966 PF09861 Lactate racemase N-terminal domain Thert_02970 PF00378 Enoyl-CoA hydratase/isomerase Thert_02971 PF02770 Acyl-CoA dehydrogenase, middle domain Thert_02971 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Thert_02971 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Thert_02972 PF01012 Electron transfer flavoprotein domain Thert_02973 PF00766 Electron transfer flavoprotein FAD-binding domain Thert_02973 PF01012 Electron transfer flavoprotein domain Thert_02975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thert_02975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Thert_02977 PF00108 Thiolase, N-terminal domain Thert_02977 PF02803 Thiolase, C-terminal domain Thert_02978 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Thert_02978 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Thert_02979 PF02629 CoA binding domain Thert_02979 PF06971 Putative DNA-binding protein N-terminus Thert_02982 PF00704 Glycosyl hydrolases family 18 Thert_02984 PF06207 Protein of unknown function (DUF1002) Thert_02986 PF02310 B12 binding domain Thert_02986 PF04055 Radical SAM superfamily Thert_02987 PF03009 Glycerophosphoryl diester phosphodiesterase family Thert_02992 PF01661 Macro domain Thert_02993 PF02673 Bacitracin resistance protein BacA Thert_02995 PF14098 Small, acid-soluble spore protein I Thert_02999 PF00258 Flavodoxin Thert_02999 PF00753 Metallo-beta-lactamase superfamily Thert_03000 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thert_03003 PF00005 ABC transporter Thert_03004 PF00528 Binding-protein-dependent transport system inner membrane component Thert_03007 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Thert_03007 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Thert_03008 PF04199 Putative cyclase Thert_03010 PF08439 Oligopeptidase F Thert_03010 PF01432 Peptidase family M3 Thert_03011 PF03315 Serine dehydratase beta chain Thert_03012 PF03313 Serine dehydratase alpha chain Thert_03013 PF01761 3-dehydroquinate synthase Thert_03014 PF13193 AMP-binding enzyme C-terminal domain Thert_03014 PF00501 AMP-binding enzyme Thert_03015 PF01842 ACT domain Thert_03015 PF00800 Prephenate dehydratase Thert_03015 PF01817 Chorismate mutase type II Thert_03016 PF00793 DAHP synthetase I family Thert_03016 PF18152 DAHP synthase ferredoxin-like domain Thert_03017 PF02153 Prephenate dehydrogenase Thert_03018 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thert_03019 PF00486 Transcriptional regulatory protein, C terminal Thert_03019 PF00072 Response regulator receiver domain Thert_03020 PF00512 His Kinase A (phospho-acceptor) domain Thert_03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_03020 PF18719 ArlS sensor domain Thert_03022 PF07486 Cell Wall Hydrolase Thert_03022 PF01471 Putative peptidoglycan binding domain Thert_03023 PF01169 Uncharacterized protein family UPF0016 Thert_03025 PF01232 Mannitol dehydrogenase Rossmann domain Thert_03025 PF08125 Mannitol dehydrogenase C-terminal domain Thert_03028 PF00480 ROK family Thert_03029 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Thert_03030 PF02683 Cytochrome C biogenesis protein transmembrane region Thert_03031 PF00578 AhpC/TSA family Thert_03032 PF00085 Thioredoxin Thert_03033 PF00072 Response regulator receiver domain Thert_03033 PF00486 Transcriptional regulatory protein, C terminal Thert_03035 PF00512 His Kinase A (phospho-acceptor) domain Thert_03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_03035 PF00672 HAMP domain Thert_03037 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Thert_03037 PF01276 Orn/Lys/Arg decarboxylase, major domain Thert_03040 PF02769 AIR synthase related protein, C-terminal domain Thert_03040 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thert_03040 PF00586 AIR synthase related protein, N-terminal domain Thert_03043 PF07690 Major Facilitator Superfamily Thert_03044 PF13411 MerR HTH family regulatory protein Thert_03045 PF01871 AMMECR1 Thert_03045 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Thert_03057 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Thert_03058 PF00528 Binding-protein-dependent transport system inner membrane component Thert_03060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Thert_03060 PF00005 ABC transporter Thert_03061 PF00005 ABC transporter Thert_03062 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Thert_03062 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Thert_03062 PF01488 Shikimate / quinate 5-dehydrogenase Thert_03063 PF03900 Porphobilinogen deaminase, C-terminal domain Thert_03063 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Thert_03066 PF00202 Aminotransferase class-III Thert_03068 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Thert_03068 PF10414 Sirohaem synthase dimerisation region Thert_03068 PF14824 Sirohaem biosynthesis protein central Thert_03069 PF00490 Delta-aminolevulinic acid dehydratase Thert_03071 PF05690 Thiazole biosynthesis protein ThiG Thert_03071 PF02597 ThiS family Thert_03072 PF00899 ThiF family Thert_03074 PF01206 Sulfurtransferase TusA Thert_03075 PF01053 Cys/Met metabolism PLP-dependent enzyme Thert_03076 PF01507 Phosphoadenosine phosphosulfate reductase family Thert_03077 PF00009 Elongation factor Tu GTP binding domain Thert_03079 PF00005 ABC transporter Thert_03080 PF00528 Binding-protein-dependent transport system inner membrane component Thert_03081 PF01507 Phosphoadenosine phosphosulfate reductase family Thert_03090 PF16360 GTP-binding GTPase Middle Region Thert_03090 PF01926 50S ribosome-binding GTPase Thert_03090 PF13167 GTP-binding GTPase N-terminal Thert_03094 PF00293 NUDIX domain Thert_03095 PF01205 Uncharacterized protein family UPF0029 Thert_03095 PF09186 Domain of unknown function (DUF1949) Thert_03100 PF01925 Sulfite exporter TauE/SafE Thert_03102 PF01709 Transcriptional regulator Thert_03103 PF01584 CheW-like domain Thert_03105 PF02075 Crossover junction endodeoxyribonuclease RuvC Thert_03106 PF01330 RuvA N terminal domain Thert_03106 PF07499 RuvA, C-terminal domain Thert_03107 PF17864 RuvB AAA lid domain Thert_03107 PF05491 RuvB C-terminal winged helix domain Thert_03107 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thert_03108 PF11146 Protein of unknown function (DUF2905) Thert_03109 PF08486 Stage II sporulation protein Thert_03109 PF04122 Putative cell wall binding repeat 2 Thert_03110 PF02547 Queuosine biosynthesis protein Thert_03111 PF01702 Queuine tRNA-ribosyltransferase Thert_03118 PF07549 SecD/SecF GG Motif Thert_03118 PF02355 Protein export membrane protein Thert_03119 PF02355 Protein export membrane protein Thert_03121 PF03109 ABC1 family Thert_03124 PF02272 DHHA1 domain Thert_03124 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Thert_03124 PF01368 DHH family Thert_03124 PF17768 RecJ OB domain Thert_03125 PF00156 Phosphoribosyl transferase domain Thert_03126 PF04607 Region found in RelA / SpoT proteins Thert_03126 PF13291 ACT domain Thert_03126 PF02824 TGS domain Thert_03127 PF02580 D-Tyr-tRNA(Tyr) deacylase Thert_03128 PF00753 Metallo-beta-lactamase superfamily Thert_03129 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Thert_03129 PF02769 AIR synthase related protein, C-terminal domain Thert_03129 PF00586 AIR synthase related protein, N-terminal domain Thert_03131 PF00156 Phosphoribosyl transferase domain Thert_03132 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Thert_03132 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Thert_03134 PF01979 Amidohydrolase family Thert_03135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Thert_03136 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Thert_03137 PF01180 Dihydroorotate dehydrogenase Thert_03138 PF00156 Phosphoribosyl transferase domain Thert_03139 PF17785 PUA-like domain Thert_03139 PF10672 S-adenosylmethionine-dependent methyltransferase Thert_03149 PF01678 Diaminopimelate epimerase Thert_03150 PF03755 YicC-like family, N-terminal region Thert_03150 PF08340 Domain of unknown function (DUF1732) Thert_03151 PF04025 Domain of unknown function (DUF370) Thert_03152 PF00625 Guanylate kinase Thert_03153 PF01192 RNA polymerase Rpb6 Thert_03154 PF04127 DNA / pantothenate metabolism flavoprotein Thert_03154 PF02441 Flavoprotein Thert_03156 PF04851 Type III restriction enzyme, res subunit Thert_03156 PF17764 3′ DNA-binding domain (3′BD) Thert_03156 PF18074 Primosomal protein N C-terminal domain Thert_03156 PF00271 Helicase conserved C-terminal domain Thert_03156 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Thert_03157 PF01327 Polypeptide deformylase Thert_03158 PF02911 Formyl transferase, C-terminal domain Thert_03158 PF00551 Formyl transferase Thert_03160 PF04298 Putative neutral zinc metallopeptidase Thert_03161 PF01189 16S rRNA methyltransferase RsmB/F Thert_03161 PF01029 NusB family Thert_03162 PF04055 Radical SAM superfamily Thert_03165 PF00069 Protein kinase domain Thert_03165 PF03793 PASTA domain Thert_03166 PF03193 RsgA GTPase Thert_03166 PF16745 RsgA N-terminal domain Thert_03168 PF00834 Ribulose-phosphate 3 epimerase family Thert_03171 PF00830 Ribosomal L28 family Thert_03172 PF03780 Asp23 family, cell envelope-related function Thert_03173 PF13684 Dihydroxyacetone kinase family Thert_03173 PF02734 DAK2 domain Thert_03174 PF17191 RecG wedge domain Thert_03174 PF00271 Helicase conserved C-terminal domain Thert_03174 PF00270 DEAD/DEAH box helicase Thert_03175 PF02645 Uncharacterised protein, DegV family COG1307 Thert_03177 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thert_03179 PF00269 Small, acid-soluble spore proteins, alpha/beta type Thert_03183 PF01467 Cytidylyltransferase-like Thert_03185 PF07670 Nucleoside recognition Thert_03187 PF05636 HIGH Nucleotidyl Transferase Thert_03188 PF01515 Phosphate acetyl/butaryl transferase Thert_03189 PF00871 Acetokinase family Thert_03190 PF02620 Large ribosomal RNA subunit accumulation protein YceD Thert_03191 PF01783 Ribosomal L32p protein family Thert_03193 PF02504 Fatty acid synthesis protein Thert_03194 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thert_03194 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thert_03196 PF03060 Nitronate monooxygenase Thert_03197 PF00698 Acyl transferase domain Thert_03199 PF00550 Phosphopantetheine attachment site Thert_03200 PF02801 Beta-ketoacyl synthase, C-terminal domain Thert_03200 PF00109 Beta-ketoacyl synthase, N-terminal domain Thert_03201 PF14622 Ribonuclease-III-like Thert_03201 PF00035 Double-stranded RNA binding motif Thert_03203 PF04232 Stage V sporulation protein S (SpoVS) Thert_03205 PF06470 SMC proteins Flexible Hinge Domain Thert_03205 PF02463 RecF/RecN/SMC N terminal domain Thert_03206 PF02881 SRP54-type protein, helical bundle domain Thert_03206 PF00448 SRP54-type protein, GTPase domain Thert_03213 PF02687 FtsX-like permease family Thert_03213 PF00005 ABC transporter Thert_03213 PF12704 MacB-like periplasmic core domain Thert_03216 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Thert_03217 PF00448 SRP54-type protein, GTPase domain Thert_03217 PF02881 SRP54-type protein, helical bundle domain Thert_03217 PF02978 Signal peptide binding domain Thert_03218 PF00886 Ribosomal protein S16 Thert_03220 PF05239 PRC-barrel domain Thert_03220 PF01782 RimM N-terminal domain Thert_03221 PF01746 tRNA (Guanine-1)-methyltransferase Thert_03222 PF01245 Ribosomal protein L19 Thert_03223 PF01926 50S ribosome-binding GTPase Thert_03224 PF13335 Magnesium chelatase, subunit ChlI C-terminal Thert_03224 PF01078 Magnesium chelatase, subunit ChlI Thert_03225 PF00579 tRNA synthetases class I (W and Y) Thert_03226 PF02021 Uncharacterised protein family UPF0102 Thert_03227 PF01351 Ribonuclease HII Thert_03228 PF02481 DNA recombination-mediator protein A Thert_03228 PF17782 DprA winged helix domain Thert_03229 PF01396 Topoisomerase DNA binding C4 zinc finger Thert_03229 PF01131 DNA topoisomerase Thert_03229 PF01751 Toprim domain Thert_03231 PF00227 Proteasome subunit Thert_03232 PF00004 ATPase family associated with various cellular activities (AAA) Thert_03232 PF10431 C-terminal, D2-small domain, of ClpB protein Thert_03232 PF07724 AAA domain (Cdc48 subfamily) Thert_03233 PF06018 CodY GAF-like domain Thert_03233 PF08222 CodY helix-turn-helix domain Thert_03234 PF00460 Flagella basal body rod protein Thert_03235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thert_03235 PF00460 Flagella basal body rod protein Thert_03238 PF02049 Flagellar hook-basal body complex protein FliE Thert_03239 PF01514 Secretory protein of YscJ/FliF family Thert_03239 PF08345 Flagellar M-ring protein C-terminal Thert_03240 PF01706 FliG C-terminal domain Thert_03240 PF14841 FliG middle domain Thert_03240 PF14842 FliG N-terminal domain Thert_03243 PF18269 T3SS EscN ATPase C-terminal domain Thert_03243 PF02874 ATP synthase alpha/beta family, beta-barrel domain Thert_03243 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Thert_03247 PF03963 Flagellar hook capping protein - N-terminal region Thert_03248 PF07559 Flagellar basal body protein FlaE Thert_03248 PF00460 Flagella basal body rod protein Thert_03248 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Thert_03249 PF06289 Flagellar and Swarming motility proteins Thert_03250 PF03748 Flagellar basal body-associated protein FliL Thert_03252 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thert_03252 PF02154 Flagellar motor switch protein FliM Thert_03254 PF04509 CheC-like family Thert_03254 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Thert_03256 PF00072 Response regulator receiver domain Thert_03258 PF00813 FliP family Thert_03259 PF01313 Bacterial export proteins, family 3 Thert_03261 PF01311 Bacterial export proteins, family 1 Thert_03262 PF01312 FlhB HrpN YscU SpaS Family Thert_03263 PF00771 FHIPEP family Thert_03264 PF00448 SRP54-type protein, GTPase domain Thert_03265 PF10609 NUBPL iron-transfer P-loop NTPase Thert_03268 PF01627 Hpt domain Thert_03268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Thert_03268 PF02895 Signal transducing histidine kinase, homodimeric domain Thert_03268 PF01584 CheW-like domain Thert_03268 PF07194 P2 response regulator binding domain Thert_03269 PF01584 CheW-like domain Thert_03270 PF04509 CheC-like family Thert_03271 PF03975 CheD chemotactic sensory transduction Thert_03272 PF04542 Sigma-70 region 2 Thert_03272 PF04545 Sigma-70, region 4 Thert_03272 PF04539 Sigma-70 region 3 Thert_03275 PF00318 Ribosomal protein S2 Thert_03276 PF00889 Elongation factor TS Thert_03277 PF00696 Amino acid kinase family Thert_03278 PF01765 Ribosome recycling factor Thert_03280 PF01255 Putative undecaprenyl diphosphate synthase Thert_03282 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Thert_03282 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thert_03282 PF13288 DXP reductoisomerase C-terminal domain Thert_03283 PF17820 PDZ domain Thert_03283 PF02163 Peptidase family M50 Thert_03284 PF04551 GcpE protein Thert_03287 PF00535 Glycosyl transferase family 2 Thert_03289 PF00929 Exonuclease Thert_03289 PF02811 PHP domain Thert_03289 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Thert_03289 PF07733 Bacterial DNA polymerase III alpha NTPase domain Thert_03289 PF14579 Helix-hairpin-helix motif Thert_03289 PF11490 DNA polymerase III polC-type N-terminus II Thert_03290 PF02576 RimP N-terminal domain Thert_03290 PF17384 RimP C-terminal SH3 domain Thert_03291 PF13184 NusA-like KH domain Thert_03291 PF00575 S1 RNA binding domain Thert_03291 PF08529 NusA N-terminal domain Thert_03292 PF04296 Protein of unknown function (DUF448) Thert_03295 PF11987 Translation-initiation factor 2 Thert_03295 PF04760 Translation initiation factor IF-2, N-terminal region Thert_03295 PF00009 Elongation factor Tu GTP binding domain Thert_03297 PF02033 Ribosome-binding factor A Thert_03298 PF02272 DHHA1 domain Thert_03298 PF01368 DHH family Thert_03299 PF16198 tRNA pseudouridylate synthase B C-terminal domain Thert_03299 PF01509 TruB family pseudouridylate synthase (N terminal domain) Thert_03299 PF09157 Pseudouridine synthase II TruB, C-terminal Thert_03300 PF01687 Riboflavin kinase Thert_03300 PF06574 FAD synthetase Thert_03301 PF00312 Ribosomal protein S15 Thert_03303 PF00013 KH domain Thert_03303 PF01138 3' exoribonuclease family, domain 1 Thert_03303 PF03725 3' exoribonuclease family, domain 2 Thert_03303 PF00575 S1 RNA binding domain Thert_03303 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Thert_03304 PF01522 Polysaccharide deacetylase Thert_03305 PF00675 Insulinase (Peptidase family M16) Thert_03305 PF05193 Peptidase M16 inactive domain Thert_03306 PF00692 dUTPase Thert_03308 PF00696 Amino acid kinase family Thert_03308 PF13840 ACT domain Thert_03309 PF00574 Clp protease Thert_03313 PF17854 FtsK alpha domain Thert_03313 PF01580 FtsK/SpoIIIE family Thert_03313 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Thert_03313 PF09397 Ftsk gamma domain Thert_03314 PF04055 Radical SAM superfamily Thert_03314 PF00919 Uncharacterized protein family UPF0004 Thert_03314 PF18693 TRAM domain Thert_03316 PF01066 CDP-alcohol phosphatidyltransferase Thert_03317 PF02464 Competence-damaged protein Thert_03317 PF00994 Probable molybdopterin binding domain Thert_03317 PF18146 Damage-inducible protein CinA KH domain Thert_03318 PF00154 recA bacterial DNA recombination protein Thert_03319 PF02631 RecX family Thert_03323 PF00149 Calcineurin-like phosphoesterase Thert_03323 PF12320 Type 5 capsule protein repressor C-terminal domain Thert_03324 PF13476 AAA domain Thert_03325 PF01966 HD domain Thert_03325 PF12072 Domain of unknown function (DUF3552) Thert_03325 PF00013 KH domain Thert_03326 PF13277 YmdB-like protein Thert_03327 PF04232 Stage V sporulation protein S (SpoVS) Thert_03329 PF02811 PHP domain Thert_03330 PF00155 Aminotransferase class I and II Thert_03331 PF00206 Lyase Thert_03331 PF10397 Adenylosuccinate lyase C-terminus Thert_03332 PF00152 tRNA synthetases class II (D, K and N) Thert_03332 PF01336 OB-fold nucleic acid binding domain Thert_03333 PF00004 ATPase family associated with various cellular activities (AAA) Thert_03333 PF17866 AAA lid domain Thert_03334 PF06838 Methionine gamma-lyase Thert_03335 PF00717 Peptidase S24-like Thert_03335 PF01726 LexA DNA binding domain Thert_03336 PF02899 Phage integrase, N-terminal SAM-like domain Thert_03336 PF00589 Phage integrase family Thert_03337 PF00075 RNase H Thert_03338 PF03807 NADP oxidoreductase coenzyme F420-dependent Thert_03338 PF14748 Pyrroline-5-carboxylate reductase dimerisation Thert_03339 PF17209 Hfq protein Thert_03341 PF08676 MutL C terminal dimerisation domain Thert_03341 PF01119 DNA mismatch repair protein, C-terminal domain Thert_03342 PF00488 MutS domain V Thert_03342 PF05190 MutS family domain IV Thert_03342 PF01624 MutS domain I Thert_03342 PF05188 MutS domain II Thert_03342 PF05192 MutS domain III Thert_03343 PF05192 MutS domain III Thert_03343 PF05190 MutS family domain IV Thert_03343 PF01624 MutS domain I Thert_03343 PF00488 MutS domain V Thert_03343 PF05188 MutS domain II Thert_03345 PF00919 Uncharacterized protein family UPF0004 Thert_03345 PF04055 Radical SAM superfamily Thert_03345 PF01938 TRAM domain Thert_03346 PF01739 CheR methyltransferase, SAM binding domain Thert_03346 PF03705 CheR methyltransferase, all-alpha domain Thert_03347 PF02675 S-adenosylmethionine decarboxylase Thert_03348 PF00575 S1 RNA binding domain Thert_03349 PF02401 LytB protein Thert_03351 PF02224 Cytidylate kinase Thert_03355 PF00300 Histidine phosphatase superfamily (branch 1) Thert_03356 PF01418 Helix-turn-helix domain, rpiR family Thert_03356 PF01380 SIS domain Thert_03357 PF01975 Survival protein SurE Thert_03360 PF02436 Conserved carboxylase domain Thert_03360 PF00364 Biotin-requiring enzyme Thert_03360 PF00682 HMGL-like Thert_03361 PF00491 Arginase family Thert_03363 PF17284 Spermidine synthase tetramerisation domain Thert_03365 PF01479 S4 domain Thert_03365 PF00849 RNA pseudouridylate synthase Thert_03366 PF13932 GidA associated domain Thert_03366 PF01134 Glucose inhibited division protein A Thert_03370 PF00768 D-alanyl-D-alanine carboxypeptidase Thert_03370 PF07943 Penicillin-binding protein 5, C-terminal domain Thert_03371 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Thert_03373 PF04079 Segregation and condensation complex subunit ScpB Thert_03374 PF02616 Segregation and condensation protein ScpA Thert_03375 PF02163 Peptidase family M50 Thert_03376 PF01743 Poly A polymerase head domain Thert_03376 PF12627 Probable RNA and SrmB- binding site of polymerase A Thert_03376 PF13735 tRNA nucleotidyltransferase domain 2 putative Thert_03377 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thert_03379 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Thert_03380 PF07311 Dodecin Thert_03383 PF04542 Sigma-70 region 2 Thert_03383 PF04545 Sigma-70, region 4 Thert_03383 PF04539 Sigma-70 region 3 Thert_03384 PF13581 Histidine kinase-like ATPase domain Thert_03385 PF01740 STAS domain Thert_03386 PF07943 Penicillin-binding protein 5, C-terminal domain Thert_03386 PF00768 D-alanyl-D-alanine carboxypeptidase Thert_03387 PF02899 Phage integrase, N-terminal SAM-like domain Thert_03387 PF00589 Phage integrase family Thert_03388 PF01944 Stage II sporulation protein M Thert_03390 PF00293 NUDIX domain Thert_03394 PF00535 Glycosyl transferase family 2 Thert_03398 PF00072 Response regulator receiver domain Thert_03398 PF08769 Sporulation initiation factor Spo0A C terminal Thert_03399 PF05580 SpoIVB peptidase S55 Thert_03399 PF17820 PDZ domain Thert_03401 PF02463 RecF/RecN/SMC N terminal domain Thert_03403 PF01316 Arginine repressor, DNA binding domain Thert_03403 PF02863 Arginine repressor, C-terminal domain Thert_03404 PF01513 ATP-NAD kinase Thert_03405 PF01728 FtsJ-like methyltransferase Thert_03405 PF01479 S4 domain Thert_03406 PF02780 Transketolase, C-terminal domain Thert_03406 PF02779 Transketolase, pyrimidine binding domain Thert_03406 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Thert_03409 PF00348 Polyprenyl synthetase Thert_03410 PF02609 Exonuclease VII small subunit Thert_03411 PF02601 Exonuclease VII, large subunit Thert_03411 PF13742 OB-fold nucleic acid binding domain Thert_03412 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Thert_03412 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thert_03413 PF01029 NusB family Thert_03416 PF03780 Asp23 family, cell envelope-related function Thert_03420 PF09581 Stage III sporulation protein AF (Spore_III_AF) Thert_03422 PF09546 Stage III sporulation protein AE (spore_III_AE) Thert_03424 PF06686 Stage III sporulation protein AC/AD protein family Thert_03429 PF09285 Elongation factor P, C-terminal Thert_03429 PF08207 Elongation factor P (EF-P) KOW-like domain Thert_03429 PF01132 Elongation factor P (EF-P) OB domain Thert_03430 PF01321 Creatinase/Prolidase N-terminal domain Thert_03430 PF00557 Metallopeptidase family M24 Thert_03431 PF01220 Dehydroquinase class II Thert_03432 PF00171 Aldehyde dehydrogenase family Thert_03433 PF00696 Amino acid kinase family Thert_03433 PF01472 PUA domain Thert_03434 PF01202 Shikimate kinase Thert_03444 PF06750 Bacterial Peptidase A24 N-terminal domain Thert_03444 PF01478 Type IV leader peptidase family Thert_03445 PF00114 Pilin (bacterial filament) Thert_03445 PF07963 Prokaryotic N-terminal methylation motif Thert_03446 PF00482 Type II secretion system (T2SS), protein F Thert_03447 PF00437 Type II/IV secretion system protein Thert_03448 PF00437 Type II/IV secretion system protein Thert_03449 PF08501 Shikimate dehydrogenase substrate binding domain Thert_03449 PF01488 Shikimate / quinate 5-dehydrogenase Thert_03451 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Thert_03451 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Thert_03452 PF04542 Sigma-70 region 2 Thert_03452 PF04545 Sigma-70, region 4 Thert_03453 PF00905 Penicillin binding protein transpeptidase domain Thert_03453 PF03717 Penicillin-binding Protein dimerisation domain Thert_03457 PF02618 YceG-like family Thert_03458 PF06133 Control of competence regulator ComK, YlbF/YmcA Thert_03459 PF00753 Metallo-beta-lactamase superfamily Thert_03459 PF17770 Ribonuclease J C-terminal domain Thert_03459 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Thert_03461 PF01475 Ferric uptake regulator family Thert_03462 PF06949 Protein of unknown function (DUF1292) Thert_03463 PF03652 Holliday junction resolvase Thert_03464 PF06135 IreB regulatory phosphoprotein Thert_03465 PF01411 tRNA synthetases class II (A) Thert_03465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Thert_03465 PF02272 DHHA1 domain Thert_03468 PF01594 AI-2E family transporter Thert_03480 PF00266 Aminotransferase class-V Thert_03481 PF02082 Transcriptional regulator Thert_03482 PF12002 MgsA AAA+ ATPase C terminal Thert_03482 PF16193 AAA C-terminal domain Thert_03482 PF05496 Holliday junction DNA helicase RuvB P-loop domain Thert_03483 PF01255 Putative undecaprenyl diphosphate synthase Thert_03484 PF00085 Thioredoxin Thert_03485 PF02583 Metal-sensitive transcriptional repressor Thert_03486 PF00899 ThiF family Thert_03488 PF02938 GAD domain Thert_03488 PF00152 tRNA synthetases class II (D, K and N) Thert_03488 PF01336 OB-fold nucleic acid binding domain Thert_03490 PF13393 Histidyl-tRNA synthetase Thert_03490 PF03129 Anticodon binding domain Thert_03491 PF01479 S4 domain Thert_03491 PF00849 RNA pseudouridylate synthase Thert_03492 PF01252 Signal peptidase (SPase) II Thert_03494 PF00456 Transketolase, thiamine diphosphate binding domain Thert_03494 PF02780 Transketolase, C-terminal domain Thert_03494 PF02779 Transketolase, pyrimidine binding domain Thert_03503 PF00589 Phage integrase family Thert_03506 PF01966 HD domain Thert_03506 PF11871 Domain of unknown function (DUF3391) Thert_03507 PF00563 EAL domain Thert_03507 PF03707 Bacterial signalling protein N terminal repeat Thert_03507 PF00990 Diguanylate cyclase, GGDEF domain Thert_03508 PF00072 Response regulator receiver domain Thert_03512 PF00578 AhpC/TSA family Thert_03513 PF00290 Tryptophan synthase alpha chain Thert_03514 PF00291 Pyridoxal-phosphate dependent enzyme Thert_03515 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thert_03516 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thert_03517 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Thert_03518 PF00218 Indole-3-glycerol phosphate synthase Thert_03519 PF00591 Glycosyl transferase family, a/b domain Thert_03519 PF02885 Glycosyl transferase family, helical bundle domain Thert_03520 PF00591 Glycosyl transferase family, a/b domain Thert_03520 PF00117 Glutamine amidotransferase class-I Thert_03520 PF02885 Glycosyl transferase family, helical bundle domain Thert_03521 PF04715 Anthranilate synthase component I, N terminal region Thert_03521 PF00425 chorismate binding enzyme Thert_03524 PF01910 Thiamine-binding protein Thert_03525 PF01048 Phosphorylase superfamily