Theco_0001 SM00052 Putative diguanylate phosphodiesterase Theco_0001 SM00267 diguanylate cyclase Theco_0007 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_0010 SM00342 helix_turn_helix, arabinose operon control protein Theco_0010 SM00871 Bacterial transcription activator, effector binding domain Theco_0011 SM00633 Glycosyl hydrolase family 10 Theco_0015 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_0022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0022 SM00387 Histidine kinase-like ATPases Theco_0023 SM00342 helix_turn_helix, arabinose operon control protein Theco_0023 SM00448 cheY-homologous receiver domain Theco_0036 SM00382 ATPases associated with a variety of cellular activities Theco_0039 SM00710 Parallel beta-helix repeats Theco_0039 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Theco_0044 SM00382 ATPases associated with a variety of cellular activities Theco_0045 SM00382 ATPases associated with a variety of cellular activities Theco_0046 SM00257 Lysin motif Theco_0057 SM00342 helix_turn_helix, arabinose operon control protein Theco_0057 SM00448 cheY-homologous receiver domain Theco_0058 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0058 SM00387 Histidine kinase-like ATPases Theco_0060 SM00382 ATPases associated with a variety of cellular activities Theco_0077 SM00382 ATPases associated with a variety of cellular activities Theco_0100 SM00382 ATPases associated with a variety of cellular activities Theco_0102 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_0105 SM00859 Semialdehyde dehydrogenase, NAD binding domain Theco_0106 SM00530 Helix-turn-helix XRE-family like proteins Theco_0110 SM00342 helix_turn_helix, arabinose operon control protein Theco_0114 SM00872 Alpha mannosidase, middle domain Theco_0122 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_0129 SM00966 SpoVT / AbrB like domain Theco_0131 SM00422 helix_turn_helix, mercury resistance Theco_0136 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_0138 SM00849 Metallo-beta-lactamase superfamily Theco_0141 SM00091 PAS domain Theco_0141 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0141 SM00387 Histidine kinase-like ATPases Theco_0141 SM00388 His Kinase A (phosphoacceptor) domain Theco_0142 SM00448 cheY-homologous receiver domain Theco_0142 SM00862 Transcriptional regulatory protein, C terminal Theco_0143 SM00257 Lysin motif Theco_0143 SM01208 Theco_0143 Theco_0148 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Theco_0149 SM00487 DEAD-like helicases superfamily Theco_0149 SM00490 helicase superfamily c-terminal domain Theco_0169 SM00858 Theco_0169 Theco_0172 SM00357 Cold shock protein domain Theco_0174 SM00957 SecA DEAD-like domain Theco_0174 SM00958 SecA preprotein cross-linking domain Theco_0179 SM00382 ATPases associated with a variety of cellular activities Theco_0180 SM00859 Semialdehyde dehydrogenase, NAD binding domain Theco_0188 SM00382 ATPases associated with a variety of cellular activities Theco_0191 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_0191 SM00245 tail specific protease Theco_0195 SM00487 DEAD-like helicases superfamily Theco_0195 SM00490 helicase superfamily c-terminal domain Theco_0203 SM00382 ATPases associated with a variety of cellular activities Theco_0211 SM01043 Bacterial transcriptional activator domain Theco_0212 SM00331 Sigma factor PP2C-like phosphatases Theco_0216 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Theco_0216 SM00292 breast cancer carboxy-terminal domain Theco_0216 SM00532 Ligase N family Theco_0226 SM00382 ATPases associated with a variety of cellular activities Theco_0226 SM01086 C-terminal, D2-small domain, of ClpB protein Theco_0232 SM00382 ATPases associated with a variety of cellular activities Theco_0233 SM00382 ATPases associated with a variety of cellular activities Theco_0241 SM00382 ATPases associated with a variety of cellular activities Theco_0245 SM00670 Large family of predicted nucleotide-binding domains Theco_0250 SM00840 Theco_0250 Theco_0252 SM00967 RNA 2'-O ribose methyltransferase substrate binding Theco_0254 SM00382 ATPases associated with a variety of cellular activities Theco_0264 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Theco_0265 SM00649 Ribosomal protein L11/L12 Theco_0272 SM00663 RNA polymerase I subunit A N-terminus Theco_0276 SM00838 Elongation factor G C-terminus Theco_0276 SM00889 Elongation factor G, domain IV Theco_0278 SM00382 ATPases associated with a variety of cellular activities Theco_0280 SM01403 Theco_0280 Theco_0284 SM01382 Theco_0284 Theco_0284 SM01383 Theco_0284 Theco_0287 SM00322 K homology RNA-binding domain Theco_0291 SM01374 Theco_0291 Theco_0292 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Theco_0309 SM00662 RNA polymerases D Theco_0316 SM00646 Theco_0316 Theco_0319 SM01251 Theco_0319 Theco_0354 SM00421 helix_turn_helix, Lux Regulon Theco_0354 SM00448 cheY-homologous receiver domain Theco_0369 SM00382 ATPases associated with a variety of cellular activities Theco_0370 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_0374 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0375 SM00342 helix_turn_helix, arabinose operon control protein Theco_0375 SM00448 cheY-homologous receiver domain Theco_0380 SM00530 Helix-turn-helix XRE-family like proteins Theco_0383 SM00420 helix_turn_helix, Deoxyribose operon repressor Theco_0387 SM00861 Transketolase, pyrimidine binding domain Theco_0400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_0404 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0405 SM00342 helix_turn_helix, arabinose operon control protein Theco_0405 SM00448 cheY-homologous receiver domain Theco_0409 SM01217 Theco_0409 Theco_0413 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Theco_0415 SM00882 Coenzyme A transferase Theco_0416 SM00882 Coenzyme A transferase Theco_0420 SM00382 ATPases associated with a variety of cellular activities Theco_0421 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Theco_0422 SM00812 Alpha-L-fucosidase Theco_0430 SM00346 helix_turn_helix isocitrate lyase regulation Theco_0435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0435 SM00387 Histidine kinase-like ATPases Theco_0436 SM00342 helix_turn_helix, arabinose operon control protein Theco_0436 SM00448 cheY-homologous receiver domain Theco_0441 SM00382 ATPases associated with a variety of cellular activities Theco_0442 SM00382 ATPases associated with a variety of cellular activities Theco_0443 SM01217 Theco_0443 Theco_0444 SM00382 ATPases associated with a variety of cellular activities Theco_0447 SM00448 cheY-homologous receiver domain Theco_0447 SM00862 Transcriptional regulatory protein, C terminal Theco_0448 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0448 SM00387 Histidine kinase-like ATPases Theco_0448 SM00388 His Kinase A (phosphoacceptor) domain Theco_0457 SM00342 helix_turn_helix, arabinose operon control protein Theco_0457 SM00448 cheY-homologous receiver domain Theco_0470 SM00382 ATPases associated with a variety of cellular activities Theco_0472 SM00421 helix_turn_helix, Lux Regulon Theco_0472 SM00448 cheY-homologous receiver domain Theco_0479 SM00793 Accessory gene regulator B Theco_0481 SM00850 LytTr DNA-binding domain Theco_0485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0485 SM00387 Histidine kinase-like ATPases Theco_0486 SM00342 helix_turn_helix, arabinose operon control protein Theco_0486 SM00448 cheY-homologous receiver domain Theco_0494 SM00287 Bacterial SH3 domain homologues Theco_0509 SM00867 YceI-like domain Theco_0516 SM00822 Theco_0516 Theco_0517 SM00420 helix_turn_helix, Deoxyribose operon repressor Theco_0517 SM01134 Theco_0517 Theco_0522 SM00382 ATPases associated with a variety of cellular activities Theco_0528 SM00813 Alpha-L-arabinofuranosidase C-terminus Theco_0532 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_0550 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_0551 SM00382 ATPases associated with a variety of cellular activities Theco_0552 SM00382 ATPases associated with a variety of cellular activities Theco_0554 SM00287 Bacterial SH3 domain homologues Theco_0556 SM00354 helix_turn _helix lactose operon repressor Theco_0560 SM00382 ATPases associated with a variety of cellular activities Theco_0564 SM00852 Probable molybdopterin binding domain Theco_0565 SM00852 Probable molybdopterin binding domain Theco_0568 SM00883 Chaperonin 10 Kd subunit Theco_0571 SM00342 helix_turn_helix, arabinose operon control protein Theco_0572 SM00478 endonuclease III Theco_0582 SM00382 ATPases associated with a variety of cellular activities Theco_0583 SM00116 Domain in cystathionine beta-synthase and other proteins. Theco_0586 SM00562 Theco_0586 Theco_0587 SM00354 helix_turn _helix lactose operon repressor Theco_0593 SM00640 Glycosyl hydrolases family 32 Theco_0608 SM00240 Forkhead associated domain Theco_0611 SM00518 AP endonuclease family 2 Theco_0613 SM00861 Transketolase, pyrimidine binding domain Theco_0614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_0614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0621 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_0621 SM00245 tail specific protease Theco_0622 SM00631 Theco_0622 Theco_0626 SM00342 helix_turn_helix, arabinose operon control protein Theco_0626 SM00448 cheY-homologous receiver domain Theco_0627 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0629 SM00100 Cyclic nucleotide-monophosphate binding domain Theco_0629 SM00419 helix_turn_helix, cAMP Regulatory protein Theco_0630 SM00342 helix_turn_helix, arabinose operon control protein Theco_0632 SM00858 Theco_0632 Theco_0637 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0638 SM00342 helix_turn_helix, arabinose operon control protein Theco_0638 SM00448 cheY-homologous receiver domain Theco_0648 SM00387 Histidine kinase-like ATPases Theco_0649 SM00421 helix_turn_helix, Lux Regulon Theco_0649 SM00448 cheY-homologous receiver domain Theco_0658 SM00342 helix_turn_helix, arabinose operon control protein Theco_0658 SM00448 cheY-homologous receiver domain Theco_0673 SM00046 Diacylglycerol kinase catalytic domain (presumed) Theco_0675 SM00448 cheY-homologous receiver domain Theco_0675 SM00862 Transcriptional regulatory protein, C terminal Theco_0676 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0676 SM00387 Histidine kinase-like ATPases Theco_0676 SM00388 His Kinase A (phosphoacceptor) domain Theco_0682 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Theco_0702 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0702 SM00387 Histidine kinase-like ATPases Theco_0702 SM00388 His Kinase A (phosphoacceptor) domain Theco_0703 SM00448 cheY-homologous receiver domain Theco_0703 SM00862 Transcriptional regulatory protein, C terminal Theco_0716 SM00448 cheY-homologous receiver domain Theco_0717 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_0718 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_0723 SM00382 ATPases associated with a variety of cellular activities Theco_0729 SM00852 Probable molybdopterin binding domain Theco_0753 SM00382 ATPases associated with a variety of cellular activities Theco_0756 SM00365 Leucine-rich repeat, SDS22-like subfamily Theco_0772 SM00530 Helix-turn-helix XRE-family like proteins Theco_0773 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_0775 SM01149 Theco_0775 Theco_0785 SM00382 ATPases associated with a variety of cellular activities Theco_0792 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_0799 SM00382 ATPases associated with a variety of cellular activities Theco_0799 SM00930 Theco_0799 Theco_0803 SM00448 cheY-homologous receiver domain Theco_0803 SM00862 Transcriptional regulatory protein, C terminal Theco_0804 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0804 SM00387 Histidine kinase-like ATPases Theco_0804 SM00388 His Kinase A (phosphoacceptor) domain Theco_0812 SM00382 ATPases associated with a variety of cellular activities Theco_0822 SM00287 Bacterial SH3 domain homologues Theco_0822 SM00646 Theco_0822 Theco_0830 SM00257 Lysin motif Theco_0832 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_0832 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0848 SM00493 Theco_0848 Theco_0851 SM00460 Transglutaminase/protease-like homologues Theco_0854 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0854 SM00387 Histidine kinase-like ATPases Theco_0855 SM00342 helix_turn_helix, arabinose operon control protein Theco_0855 SM00448 cheY-homologous receiver domain Theco_0857 SM00382 ATPases associated with a variety of cellular activities Theco_0872 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_0876 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_0876 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0878 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0878 SM00387 Histidine kinase-like ATPases Theco_0882 SM00382 ATPases associated with a variety of cellular activities Theco_0890 SM00382 ATPases associated with a variety of cellular activities Theco_0893 SM00382 ATPases associated with a variety of cellular activities Theco_0894 SM00382 ATPases associated with a variety of cellular activities Theco_0898 SM00448 cheY-homologous receiver domain Theco_0898 SM00862 Transcriptional regulatory protein, C terminal Theco_0899 SM00387 Histidine kinase-like ATPases Theco_0899 SM00388 His Kinase A (phosphoacceptor) domain Theco_0900 SM00382 ATPases associated with a variety of cellular activities Theco_0903 SM00382 ATPases associated with a variety of cellular activities Theco_0916 SM00420 helix_turn_helix, Deoxyribose operon repressor Theco_0916 SM01134 Theco_0916 Theco_0921 SM00354 helix_turn _helix lactose operon repressor Theco_0932 SM00530 Helix-turn-helix XRE-family like proteins Theco_0937 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_0939 SM00052 Putative diguanylate phosphodiesterase Theco_0939 SM00267 diguanylate cyclase Theco_0940 SM01068 Putative carbohydrate binding domain Theco_0945 SM00822 Theco_0945 Theco_0946 SM00530 Helix-turn-helix XRE-family like proteins Theco_0952 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_0952 SM00876 Biotin and Thiamin Synthesis associated domain Theco_0955 SM00342 helix_turn_helix, arabinose operon control protein Theco_0964 SM00267 diguanylate cyclase Theco_0965 SM00267 diguanylate cyclase Theco_0966 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_0972 SM00849 Metallo-beta-lactamase superfamily Theco_0976 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_0976 SM00732 Likely ribonuclease with RNase H fold. Theco_0980 SM00731 SprT homologues. Theco_0988 SM01007 Class II Aldolase and Adducin N-terminal domain Theco_0991 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_0993 SM00354 helix_turn _helix lactose operon repressor Theco_0994 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_0994 SM00387 Histidine kinase-like ATPases Theco_0995 SM00342 helix_turn_helix, arabinose operon control protein Theco_0995 SM00448 cheY-homologous receiver domain Theco_1004 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_1007 SM00014 Acid phosphatase homologues Theco_1018 SM00917 LeuA allosteric (dimerisation) domain Theco_1019 SM01329 Theco_1019 Theco_1024 SM00387 Histidine kinase-like ATPases Theco_1024 SM00388 His Kinase A (phosphoacceptor) domain Theco_1027 SM00382 ATPases associated with a variety of cellular activities Theco_1030 SM00849 Metallo-beta-lactamase superfamily Theco_1034 SM01217 Theco_1034 Theco_1038 SM00465 GIY-YIG type nucleases (URI domain) Theco_1041 SM00327 von Willebrand factor (vWF) type A domain Theco_1043 SM00796 Allophanate hydrolase subunit 1 Theco_1047 SM00052 Putative diguanylate phosphodiesterase Theco_1047 SM00267 diguanylate cyclase Theco_1052 SM00422 helix_turn_helix, mercury resistance Theco_1055 SM00986 Uracil DNA glycosylase superfamily Theco_1055 SM00987 UreE urease accessory protein, C-terminal domain Theco_1057 SM00382 ATPases associated with a variety of cellular activities Theco_1067 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_1076 SM00382 ATPases associated with a variety of cellular activities Theco_1081 SM00382 ATPases associated with a variety of cellular activities Theco_1082 SM00382 ATPases associated with a variety of cellular activities Theco_1085 SM00862 Transcriptional regulatory protein, C terminal Theco_1095 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Theco_1098 SM00387 Histidine kinase-like ATPases Theco_1099 SM00421 helix_turn_helix, Lux Regulon Theco_1099 SM00448 cheY-homologous receiver domain Theco_1103 SM00873 B3/4 domain Theco_1103 SM00874 tRNA synthetase B5 domain Theco_1103 SM00896 Ferredoxin-fold anticodon binding domain Theco_1107 SM00463 Small MutS-related domain Theco_1107 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Theco_1107 SM00534 ATPase domain of DNA mismatch repair MUTS family Theco_1115 SM00344 helix_turn_helix ASNC type Theco_1125 SM00822 Theco_1125 Theco_1126 SM00487 DEAD-like helicases superfamily Theco_1126 SM00490 helicase superfamily c-terminal domain Theco_1128 SM00382 ATPases associated with a variety of cellular activities Theco_1132 SM00342 helix_turn_helix, arabinose operon control protein Theco_1134 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_1171 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_1172 SM00458 Ricin-type beta-trefoil Theco_1181 SM00420 helix_turn_helix, Deoxyribose operon repressor Theco_1181 SM01134 Theco_1181 Theco_1219 SM00342 helix_turn_helix, arabinose operon control protein Theco_1232 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1233 SM00342 helix_turn_helix, arabinose operon control protein Theco_1233 SM00448 cheY-homologous receiver domain Theco_1235 SM01130 Theco_1235 Theco_1240 SM00829 Enoylreductase Theco_1247 SM00342 helix_turn_helix, arabinose operon control protein Theco_1252 SM00354 helix_turn _helix lactose operon repressor Theco_1254 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1254 SM00387 Histidine kinase-like ATPases Theco_1255 SM00342 helix_turn_helix, arabinose operon control protein Theco_1255 SM00448 cheY-homologous receiver domain Theco_1261 SM00822 Theco_1261 Theco_1261 SM01007 Class II Aldolase and Adducin N-terminal domain Theco_1265 SM00420 helix_turn_helix, Deoxyribose operon repressor Theco_1265 SM01134 Theco_1265 Theco_1274 SM00382 ATPases associated with a variety of cellular activities Theco_1276 SM00354 helix_turn _helix lactose operon repressor Theco_1279 SM00861 Transketolase, pyrimidine binding domain Theco_1281 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1281 SM00387 Histidine kinase-like ATPases Theco_1282 SM00342 helix_turn_helix, arabinose operon control protein Theco_1282 SM00448 cheY-homologous receiver domain Theco_1287 SM00421 helix_turn_helix, Lux Regulon Theco_1290 SM00822 Theco_1290 Theco_1291 SM00028 Tetratricopeptide repeats Theco_1293 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_1296 SM00091 PAS domain Theco_1296 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1296 SM00387 Histidine kinase-like ATPases Theco_1296 SM00388 His Kinase A (phosphoacceptor) domain Theco_1297 SM00448 cheY-homologous receiver domain Theco_1297 SM00862 Transcriptional regulatory protein, C terminal Theco_1298 SM00342 helix_turn_helix, arabinose operon control protein Theco_1300 SM00244 prohibitin homologues Theco_1304 SM00387 Histidine kinase-like ATPases Theco_1304 SM00388 His Kinase A (phosphoacceptor) domain Theco_1317 SM00850 LytTr DNA-binding domain Theco_1319 SM00793 Accessory gene regulator B Theco_1321 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_1327 SM00382 ATPases associated with a variety of cellular activities Theco_1331 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Theco_1331 SM00474 3'-5' exonuclease Theco_1331 SM00475 5'-3' exonuclease Theco_1331 SM00482 DNA polymerase A domain Theco_1332 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Theco_1332 SM01232 Theco_1332 Theco_1345 SM00354 helix_turn _helix lactose operon repressor Theco_1349 SM00642 Alpha-amylase domain Theco_1358 SM00813 Alpha-L-arabinofuranosidase C-terminus Theco_1359 SM00354 helix_turn _helix lactose operon repressor Theco_1360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1366 SM00342 helix_turn_helix, arabinose operon control protein Theco_1366 SM00448 cheY-homologous receiver domain Theco_1367 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1367 SM00387 Histidine kinase-like ATPases Theco_1368 SM00342 helix_turn_helix, arabinose operon control protein Theco_1368 SM00448 cheY-homologous receiver domain Theco_1378 SM00642 Alpha-amylase domain Theco_1379 SM00047 Lysozyme subfamily 2 Theco_1384 SM00886 Stress responsive A/B Barrel Domain Theco_1387 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_1390 SM00342 helix_turn_helix, arabinose operon control protein Theco_1405 SM00854 Bacterial capsule synthesis protein PGA_cap Theco_1407 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Theco_1407 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_1409 SM00382 ATPases associated with a variety of cellular activities Theco_1412 SM00382 ATPases associated with a variety of cellular activities Theco_1417 SM00357 Cold shock protein domain Theco_1426 SM00487 DEAD-like helicases superfamily Theco_1426 SM00490 helicase superfamily c-terminal domain Theco_1433 SM00422 helix_turn_helix, mercury resistance Theco_1436 SM00479 Theco_1436 Theco_1440 SM00917 LeuA allosteric (dimerisation) domain Theco_1448 SM00954 Region found in RelA / SpoT proteins Theco_1453 SM00363 S4 RNA-binding domain Theco_1462 SM00267 diguanylate cyclase Theco_1474 SM00646 Theco_1474 Theco_1478 SM00487 DEAD-like helicases superfamily Theco_1478 SM00490 helicase superfamily c-terminal domain Theco_1483 SM00919 Malic enzyme, NAD binding domain Theco_1483 SM01274 Theco_1483 Theco_1484 SM00421 helix_turn_helix, Lux Regulon Theco_1484 SM00448 cheY-homologous receiver domain Theco_1486 SM00382 ATPases associated with a variety of cellular activities Theco_1492 SM00479 Theco_1492 Theco_1495 SM00479 Theco_1495 Theco_1497 SM00829 Enoylreductase Theco_1505 SM00342 helix_turn_helix, arabinose operon control protein Theco_1507 SM00342 helix_turn_helix, arabinose operon control protein Theco_1516 SM00382 ATPases associated with a variety of cellular activities Theco_1519 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1519 SM00387 Histidine kinase-like ATPases Theco_1520 SM00342 helix_turn_helix, arabinose operon control protein Theco_1520 SM00448 cheY-homologous receiver domain Theco_1537 SM00606 Cellulose Binding Domain Type IV Theco_1537 SM01217 Theco_1537 Theco_1538 SM00342 helix_turn_helix, arabinose operon control protein Theco_1540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1540 SM00387 Histidine kinase-like ATPases Theco_1541 SM00342 helix_turn_helix, arabinose operon control protein Theco_1541 SM00448 cheY-homologous receiver domain Theco_1553 SM00155 Phospholipase D. Active site motifs. Theco_1566 SM00382 ATPases associated with a variety of cellular activities Theco_1569 SM00382 ATPases associated with a variety of cellular activities Theco_1572 SM00327 von Willebrand factor (vWF) type A domain Theco_1574 SM00450 Rhodanese Homology Domain Theco_1577 SM00382 ATPases associated with a variety of cellular activities Theco_1581 SM00487 DEAD-like helicases superfamily Theco_1581 SM00490 helicase superfamily c-terminal domain Theco_1581 SM00847 Helicase associated domain (HA2) Add an annotation Theco_1590 SM00342 helix_turn_helix, arabinose operon control protein Theco_1607 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_1611 SM00382 ATPases associated with a variety of cellular activities Theco_1621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1621 SM00387 Histidine kinase-like ATPases Theco_1622 SM00342 helix_turn_helix, arabinose operon control protein Theco_1622 SM00448 cheY-homologous receiver domain Theco_1631 SM00028 Tetratricopeptide repeats Theco_1632 SM00382 ATPases associated with a variety of cellular activities Theco_1637 SM00116 Domain in cystathionine beta-synthase and other proteins. Theco_1637 SM00382 ATPases associated with a variety of cellular activities Theco_1644 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_1646 SM00257 Lysin motif Theco_1646 SM00631 Theco_1646 Theco_1650 SM00829 Enoylreductase Theco_1655 SM00342 helix_turn_helix, arabinose operon control protein Theco_1655 SM00448 cheY-homologous receiver domain Theco_1656 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1656 SM00387 Histidine kinase-like ATPases Theco_1666 SM00047 Lysozyme subfamily 2 Theco_1669 SM00382 ATPases associated with a variety of cellular activities Theco_1672 SM00257 Lysin motif Theco_1681 SM01131 Theco_1681 Theco_1684 SM00046 Diacylglycerol kinase catalytic domain (presumed) Theco_1687 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Theco_1707 SM00382 ATPases associated with a variety of cellular activities Theco_1710 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Theco_1710 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Theco_1710 SM00493 Theco_1710 Theco_1718 SM00861 Transketolase, pyrimidine binding domain Theco_1721 SM00226 Low molecular weight phosphatase family Theco_1723 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Theco_1726 SM00849 Metallo-beta-lactamase superfamily Theco_1730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1730 SM00387 Histidine kinase-like ATPases Theco_1730 SM00388 His Kinase A (phosphoacceptor) domain Theco_1731 SM00448 cheY-homologous receiver domain Theco_1731 SM00862 Transcriptional regulatory protein, C terminal Theco_1732 SM00220 Serine/Threonine protein kinases, catalytic domain Theco_1734 SM00382 ATPases associated with a variety of cellular activities Theco_1736 SM00518 AP endonuclease family 2 Theco_1737 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Theco_1737 SM01232 Theco_1737 Theco_1739 SM00487 DEAD-like helicases superfamily Theco_1739 SM00490 helicase superfamily c-terminal domain Theco_1742 SM01018 B12 binding domain Theco_1747 SM00257 Lysin motif Theco_1749 SM01230 Theco_1749 Theco_1750 SM00422 helix_turn_helix, mercury resistance Theco_1753 SM00382 ATPases associated with a variety of cellular activities Theco_1760 SM00853 MutL C terminal dimerisation domain Theco_1760 SM01340 Theco_1760 Theco_1761 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Theco_1761 SM00534 ATPase domain of DNA mismatch repair MUTS family Theco_1765 SM00382 ATPases associated with a variety of cellular activities Theco_1773 SM00636 Theco_1773 Theco_1777 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_1777 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1780 SM00854 Bacterial capsule synthesis protein PGA_cap Theco_1781 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_1782 SM00434 DNA Topoisomerase IV Theco_1783 SM00387 Histidine kinase-like ATPases Theco_1783 SM00433 TopoisomeraseII Theco_1784 SM00382 ATPases associated with a variety of cellular activities Theco_1785 SM00382 ATPases associated with a variety of cellular activities Theco_1788 SM00478 endonuclease III Theco_1788 SM00525 Theco_1788 Theco_1791 SM00646 Theco_1791 Theco_1799 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Theco_1804 SM01007 Class II Aldolase and Adducin N-terminal domain Theco_1808 SM00382 ATPases associated with a variety of cellular activities Theco_1812 SM00881 CoA binding domain Theco_1813 SM00479 Theco_1813 Theco_1813 SM00487 DEAD-like helicases superfamily Theco_1813 SM00488 Theco_1813 Theco_1813 SM00491 Theco_1813 Theco_1814 SM00028 Tetratricopeptide repeats Theco_1822 SM00851 MGS-like domain Theco_1824 SM00028 Tetratricopeptide repeats Theco_1833 SM00914 Theco_1833 Theco_1835 SM00855 Phosphoglycerate mutase family Theco_1850 SM00138 Methyltransferase, chemotaxis proteins Theco_1851 SM00562 Theco_1851 Theco_1861 SM00411 bacterial (prokaryotic) histone like domain Theco_1869 SM01207 Theco_1869 Theco_1870 SM00382 ATPases associated with a variety of cellular activities Theco_1872 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_1873 SM00563 Phosphate acyltransferases Theco_1888 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_1888 SM00387 Histidine kinase-like ATPases Theco_1888 SM00388 His Kinase A (phosphoacceptor) domain Theco_1889 SM00448 cheY-homologous receiver domain Theco_1889 SM00862 Transcriptional regulatory protein, C terminal Theco_1893 SM00363 S4 RNA-binding domain Theco_1915 SM00387 Histidine kinase-like ATPases Theco_1917 SM00936 Penicillin-binding protein 5, C-terminal domain Theco_1920 SM00382 ATPases associated with a variety of cellular activities Theco_1935 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Theco_1949 SM00382 ATPases associated with a variety of cellular activities Theco_1956 SM00861 Transketolase, pyrimidine binding domain Theco_1962 SM00448 cheY-homologous receiver domain Theco_1963 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_1967 SM00363 S4 RNA-binding domain Theco_1968 SM00861 Transketolase, pyrimidine binding domain Theco_1977 SM00878 Biotin carboxylase C-terminal domain Theco_1977 SM01209 Theco_1977 Theco_1991 SM00841 Elongation factor P, C-terminal Theco_1991 SM01185 Theco_1991 Theco_1995 SM00342 helix_turn_helix, arabinose operon control protein Theco_1999 SM00529 Helix-turn-helix diphteria tox regulatory element Theco_2002 SM00382 ATPases associated with a variety of cellular activities Theco_2005 SM01234 Theco_2005 Theco_2011 SM00382 ATPases associated with a variety of cellular activities Theco_2012 SM00382 ATPases associated with a variety of cellular activities Theco_2013 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_2014 SM00382 ATPases associated with a variety of cellular activities Theco_2017 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2024 SM00322 K homology RNA-binding domain Theco_2024 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_2026 SM00382 ATPases associated with a variety of cellular activities Theco_2027 SM00852 Probable molybdopterin binding domain Theco_2029 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2032 SM00530 Helix-turn-helix XRE-family like proteins Theco_2039 SM00382 ATPases associated with a variety of cellular activities Theco_2039 SM00843 Theco_2039 Theco_2042 SM00849 Metallo-beta-lactamase superfamily Theco_2043 SM01130 Theco_2043 Theco_2045 SM00859 Semialdehyde dehydrogenase, NAD binding domain Theco_2051 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_2051 SM00322 K homology RNA-binding domain Theco_2052 SM01387 Theco_2052 Theco_2053 SM00904 Riboflavin kinase Theco_2060 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_2060 SM00322 K homology RNA-binding domain Theco_2062 SM00479 Theco_2062 Theco_2062 SM00481 DNA polymerase alpha chain like domain Theco_2063 SM00946 Prolyl-tRNA synthetase, C-terminal Theco_2064 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_2080 SM00260 Two component signalling adaptor domain Theco_2081 SM00073 Histidine Phosphotransfer domain Theco_2081 SM00260 Two component signalling adaptor domain Theco_2081 SM00387 Histidine kinase-like ATPases Theco_2081 SM01231 Theco_2081 Theco_2082 SM00448 cheY-homologous receiver domain Theco_2084 SM00382 ATPases associated with a variety of cellular activities Theco_2084 SM00962 SRP54-type protein, GTPase domain Theco_2091 SM00448 cheY-homologous receiver domain Theco_2102 SM00382 ATPases associated with a variety of cellular activities Theco_2110 SM00382 ATPases associated with a variety of cellular activities Theco_2110 SM01086 C-terminal, D2-small domain, of ClpB protein Theco_2113 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Theco_2113 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Theco_2113 SM00493 Theco_2113 Theco_2115 SM00881 CoA binding domain Theco_2118 SM00382 ATPases associated with a variety of cellular activities Theco_2130 SM00382 ATPases associated with a variety of cellular activities Theco_2130 SM00962 SRP54-type protein, GTPase domain Theco_2130 SM00963 SRP54-type protein, helical bundle domain Theco_2132 SM00382 ATPases associated with a variety of cellular activities Theco_2132 SM00962 SRP54-type protein, GTPase domain Theco_2132 SM00963 SRP54-type protein, helical bundle domain Theco_2133 SM00968 SMC proteins Flexible Hinge Domain Theco_2134 SM00358 Double-stranded RNA binding motif Theco_2134 SM00535 Ribonuclease III family Theco_2135 SM00825 Beta-ketoacyl synthase Theco_2137 SM00822 Theco_2137 Theco_2138 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Theco_2154 SM00382 ATPases associated with a variety of cellular activities Theco_2160 SM00984 UDP binding domain Theco_2169 SM00487 DEAD-like helicases superfamily Theco_2169 SM00490 helicase superfamily c-terminal domain Theco_2171 SM01120 Theco_2171 Theco_2171 SM01121 Theco_2171 Theco_2180 SM00220 Serine/Threonine protein kinases, catalytic domain Theco_2180 SM00740 Theco_2180 Theco_2181 SM00331 Sigma factor PP2C-like phosphatases Theco_2181 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Theco_2186 SM00487 DEAD-like helicases superfamily Theco_2186 SM00490 helicase superfamily c-terminal domain Theco_2188 SM01409 Theco_2188 Theco_2189 SM00072 Guanylate kinase homologues. Theco_2193 SM00831 Cation transporter/ATPase, N-terminus Theco_2195 SM00481 DNA polymerase alpha chain like domain Theco_2201 SM00487 DEAD-like helicases superfamily Theco_2201 SM00490 helicase superfamily c-terminal domain Theco_2202 SM00318 Staphylococcal nuclease homologues Theco_2203 SM00116 Domain in cystathionine beta-synthase and other proteins. Theco_2212 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Theco_2212 SM00267 diguanylate cyclase Theco_2213 SM00363 S4 RNA-binding domain Theco_2213 SM01390 Theco_2213 Theco_2214 SM00363 S4 RNA-binding domain Theco_2221 SM00354 helix_turn _helix lactose operon repressor Theco_2227 SM00881 CoA binding domain Theco_2233 SM01350 Theco_2233 Theco_2242 SM00849 Metallo-beta-lactamase superfamily Theco_2258 SM00382 ATPases associated with a variety of cellular activities Theco_2261 SM00382 ATPases associated with a variety of cellular activities Theco_2264 SM00382 ATPases associated with a variety of cellular activities Theco_2277 SM00354 helix_turn _helix lactose operon repressor Theco_2278 SM00382 ATPases associated with a variety of cellular activities Theco_2278 SM00966 SpoVT / AbrB like domain Theco_2281 SM00382 ATPases associated with a variety of cellular activities Theco_2282 SM00354 helix_turn _helix lactose operon repressor Theco_2288 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Theco_2289 SM00851 MGS-like domain Theco_2289 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Theco_2289 SM01209 Theco_2289 Theco_2290 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Theco_2295 SM00363 S4 RNA-binding domain Theco_2302 SM00363 S4 RNA-binding domain Theco_2312 SM00864 Tubulin/FtsZ family, GTPase domain Theco_2312 SM00865 Tubulin/FtsZ family, C-terminal domain Theco_2313 SM00842 Cell division protein FtsA Theco_2323 SM00740 Theco_2323 Theco_2324 SM00740 Theco_2324 Theco_2328 SM00996 S-adenosyl-L-homocysteine hydrolase Theco_2328 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Theco_2336 SM00670 Large family of predicted nucleotide-binding domains Theco_2346 SM00981 Theco_2346 Theco_2358 SM00400 zinc finger Theco_2358 SM00493 Theco_2358 Theco_2369 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_2392 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Theco_2394 SM01133 Theco_2394 Theco_2396 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2402 SM00271 DnaJ molecular chaperone homology domain Theco_2408 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2409 SM00838 Elongation factor G C-terminus Theco_2417 SM00849 Metallo-beta-lactamase superfamily Theco_2419 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Theco_2422 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2424 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_2426 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_2428 SM01103 Theco_2428 Theco_2432 SM00460 Transglutaminase/protease-like homologues Theco_2444 SM00354 helix_turn _helix lactose operon repressor Theco_2445 SM00855 Phosphoglycerate mutase family Theco_2450 SM00382 ATPases associated with a variety of cellular activities Theco_2453 SM00062 Bacterial periplasmic substrate-binding proteins Theco_2468 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2468 SM00387 Histidine kinase-like ATPases Theco_2470 SM00342 helix_turn_helix, arabinose operon control protein Theco_2470 SM00448 cheY-homologous receiver domain Theco_2481 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_2481 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2487 SM00732 Likely ribonuclease with RNase H fold. Theco_2489 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Theco_2496 SM01091 Transporter associated domain Theco_2497 SM00382 ATPases associated with a variety of cellular activities Theco_2502 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_2505 SM00954 Region found in RelA / SpoT proteins Theco_2514 SM01323 Theco_2514 Theco_2519 SM00382 ATPases associated with a variety of cellular activities Theco_2520 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Theco_2527 SM00257 Lysin motif Theco_2538 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_2562 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Theco_2566 SM00257 Lysin motif Theco_2570 SM01004 Delta-aminolevulinic acid dehydratase Theco_2579 SM00382 ATPases associated with a variety of cellular activities Theco_2579 SM00464 Found in ATP-dependent protease La (LON) Theco_2580 SM00382 ATPases associated with a variety of cellular activities Theco_2582 SM00382 ATPases associated with a variety of cellular activities Theco_2582 SM00994 ClpX C4-type zinc finger Theco_2582 SM01086 C-terminal, D2-small domain, of ClpB protein Theco_2591 SM00421 helix_turn_helix, Lux Regulon Theco_2595 SM00382 ATPases associated with a variety of cellular activities Theco_2607 SM00909 Sporulation and spore germination Theco_2609 SM00849 Metallo-beta-lactamase superfamily Theco_2613 SM01329 Theco_2613 Theco_2621 SM00481 DNA polymerase alpha chain like domain Theco_2626 SM00116 Domain in cystathionine beta-synthase and other proteins. Theco_2627 SM00387 Histidine kinase-like ATPases Theco_2635 SM00422 helix_turn_helix, mercury resistance Theco_2646 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2649 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_2652 SM00047 Lysozyme subfamily 2 Theco_2656 SM00421 helix_turn_helix, Lux Regulon Theco_2666 SM00382 ATPases associated with a variety of cellular activities Theco_2674 SM00052 Putative diguanylate phosphodiesterase Theco_2674 SM00091 PAS domain Theco_2674 SM00267 diguanylate cyclase Theco_2679 SM00244 prohibitin homologues Theco_2680 SM00244 prohibitin homologues Theco_2681 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_2684 SM00763 PrkA AAA domain Theco_2687 SM00966 SpoVT / AbrB like domain Theco_2689 SM00448 cheY-homologous receiver domain Theco_2689 SM00862 Transcriptional regulatory protein, C terminal Theco_2692 SM01230 Theco_2692 Theco_2698 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2698 SM00387 Histidine kinase-like ATPases Theco_2698 SM00388 His Kinase A (phosphoacceptor) domain Theco_2699 SM00448 cheY-homologous receiver domain Theco_2699 SM00862 Transcriptional regulatory protein, C terminal Theco_2700 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_2702 SM00421 helix_turn_helix, Lux Regulon Theco_2702 SM00448 cheY-homologous receiver domain Theco_2703 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2703 SM00387 Histidine kinase-like ATPases Theco_2705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Theco_2708 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Theco_2710 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_2718 SM00481 DNA polymerase alpha chain like domain Theco_2730 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Theco_2730 SM00465 GIY-YIG type nucleases (URI domain) Theco_2733 SM00382 ATPases associated with a variety of cellular activities Theco_2738 SM00382 ATPases associated with a variety of cellular activities Theco_2752 SM00382 ATPases associated with a variety of cellular activities Theco_2755 SM00062 Bacterial periplasmic substrate-binding proteins Theco_2759 SM00829 Enoylreductase Theco_2762 SM00829 Enoylreductase Theco_2769 SM00382 ATPases associated with a variety of cellular activities Theco_2771 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2771 SM00387 Histidine kinase-like ATPases Theco_2771 SM00388 His Kinase A (phosphoacceptor) domain Theco_2773 SM00813 Alpha-L-arabinofuranosidase C-terminus Theco_2774 SM00342 helix_turn_helix, arabinose operon control protein Theco_2775 SM00633 Glycosyl hydrolase family 10 Theco_2778 SM00342 helix_turn_helix, arabinose operon control protein Theco_2779 SM00342 helix_turn_helix, arabinose operon control protein Theco_2779 SM00448 cheY-homologous receiver domain Theco_2780 SM00633 Glycosyl hydrolase family 10 Theco_2790 SM00342 helix_turn_helix, arabinose operon control protein Theco_2797 SM00382 ATPases associated with a variety of cellular activities Theco_2798 SM00382 ATPases associated with a variety of cellular activities Theco_2805 SM00487 DEAD-like helicases superfamily Theco_2805 SM00490 helicase superfamily c-terminal domain Theco_2810 SM00487 DEAD-like helicases superfamily Theco_2810 SM00490 helicase superfamily c-terminal domain Theco_2812 SM00382 ATPases associated with a variety of cellular activities Theco_2813 SM00382 ATPases associated with a variety of cellular activities Theco_2816 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2816 SM00387 Histidine kinase-like ATPases Theco_2816 SM00388 His Kinase A (phosphoacceptor) domain Theco_2817 SM00448 cheY-homologous receiver domain Theco_2817 SM00862 Transcriptional regulatory protein, C terminal Theco_2821 SM00849 Metallo-beta-lactamase superfamily Theco_2826 SM00342 helix_turn_helix, arabinose operon control protein Theco_2826 SM00448 cheY-homologous receiver domain Theco_2832 SM00342 helix_turn_helix, arabinose operon control protein Theco_2839 SM00382 ATPases associated with a variety of cellular activities Theco_2846 SM00422 helix_turn_helix, mercury resistance Theco_2848 SM00606 Cellulose Binding Domain Type IV Theco_2849 SM00342 helix_turn_helix, arabinose operon control protein Theco_2849 SM00448 cheY-homologous receiver domain Theco_2850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2854 SM00633 Glycosyl hydrolase family 10 Theco_2866 SM00342 helix_turn_helix, arabinose operon control protein Theco_2866 SM00448 cheY-homologous receiver domain Theco_2871 SM00422 helix_turn_helix, mercury resistance Theco_2874 SM00822 Theco_2874 Theco_2883 SM00421 helix_turn_helix, Lux Regulon Theco_2883 SM00448 cheY-homologous receiver domain Theco_2884 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Theco_2884 SM00387 Histidine kinase-like ATPases Theco_2889 SM00382 ATPases associated with a variety of cellular activities Theco_2890 SM00382 ATPases associated with a variety of cellular activities Theco_2912 SM00287 Bacterial SH3 domain homologues Theco_2912 SM00636 Theco_2912 Theco_2915 SM00845 GatB domain Theco_2928 SM00858 Theco_2928 Theco_2932 SM01005 Alanine racemase, C-terminal domain Theco_2950 SM00342 helix_turn_helix, arabinose operon control protein Theco_2950 SM00448 cheY-homologous receiver domain Theco_2951 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2955 SM01217 Theco_2955 Theco_2972 SM00635 Bacterial Ig-like domain 2 Theco_2972 SM00642 Alpha-amylase domain Theco_2984 SM00382 ATPases associated with a variety of cellular activities Theco_2996 SM00382 ATPases associated with a variety of cellular activities Theco_2997 SM00342 helix_turn_helix, arabinose operon control protein Theco_2997 SM00448 cheY-homologous receiver domain Theco_2998 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_2998 SM00387 Histidine kinase-like ATPases Theco_3002 SM00382 ATPases associated with a variety of cellular activities Theco_3003 SM00244 prohibitin homologues Theco_3006 SM00917 LeuA allosteric (dimerisation) domain Theco_3017 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Theco_3021 SM00155 Phospholipase D. Active site motifs. Theco_3032 SM00530 Helix-turn-helix XRE-family like proteins Theco_3036 SM00346 helix_turn_helix isocitrate lyase regulation Theco_3043 SM00849 Metallo-beta-lactamase superfamily Theco_3052 SM00567 E-Z type HEAT repeats Theco_3060 SM00729 Elongator protein 3, MiaB family, Radical SAM Theco_3067 SM00354 helix_turn _helix lactose operon repressor Theco_3070 SM01091 Transporter associated domain Theco_3080 SM00382 ATPases associated with a variety of cellular activities Theco_3085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_3087 SM00967 RNA 2'-O ribose methyltransferase substrate binding Theco_3090 SM01209 Theco_3090 Theco_3090 SM01210 Theco_3090 Theco_3092 SM00798 AICARFT/IMPCHase bienzyme Theco_3097 SM01211 Theco_3097 Theco_3100 SM00998 Adenylosuccinate lyase C-terminus Theco_3102 SM01001 AIR carboxylase Theco_3110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3111 SM00342 helix_turn_helix, arabinose operon control protein Theco_3111 SM00448 cheY-homologous receiver domain Theco_3132 SM00487 DEAD-like helicases superfamily Theco_3143 SM00100 Cyclic nucleotide-monophosphate binding domain Theco_3143 SM00419 helix_turn_helix, cAMP Regulatory protein Theco_3144 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_3151 SM00382 ATPases associated with a variety of cellular activities Theco_3155 SM00382 ATPases associated with a variety of cellular activities Theco_3157 SM00530 Helix-turn-helix XRE-family like proteins Theco_3161 SM00530 Helix-turn-helix XRE-family like proteins Theco_3185 SM00382 ATPases associated with a variety of cellular activities Theco_3196 SM00530 Helix-turn-helix XRE-family like proteins Theco_3198 SM00382 ATPases associated with a variety of cellular activities Theco_3200 SM00567 E-Z type HEAT repeats Theco_3200 SM00932 Scaffold protein Nfu/NifU N terminal Theco_3201 SM00710 Parallel beta-helix repeats Theco_3203 SM00460 Transglutaminase/protease-like homologues Theco_3204 SM00562 Theco_3204 Theco_3212 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_3224 SM00342 helix_turn_helix, arabinose operon control protein Theco_3224 SM00448 cheY-homologous receiver domain Theco_3225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_3235 SM00487 DEAD-like helicases superfamily Theco_3235 SM00490 helicase superfamily c-terminal domain Theco_3241 SM00420 helix_turn_helix, Deoxyribose operon repressor Theco_3241 SM01134 Theco_3241 Theco_3249 SM00072 Guanylate kinase homologues. Theco_3251 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Theco_3251 SM00387 Histidine kinase-like ATPases Theco_3252 SM00421 helix_turn_helix, Lux Regulon Theco_3252 SM00448 cheY-homologous receiver domain Theco_3254 SM00100 Cyclic nucleotide-monophosphate binding domain Theco_3254 SM00419 helix_turn_helix, cAMP Regulatory protein Theco_3264 SM00342 helix_turn_helix, arabinose operon control protein Theco_3264 SM00448 cheY-homologous receiver domain Theco_3265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3265 SM00387 Histidine kinase-like ATPases Theco_3273 SM00382 ATPases associated with a variety of cellular activities Theco_3274 SM00382 ATPases associated with a variety of cellular activities Theco_3276 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Theco_3283 SM00387 Histidine kinase-like ATPases Theco_3283 SM00388 His Kinase A (phosphoacceptor) domain Theco_3293 SM00382 ATPases associated with a variety of cellular activities Theco_3294 SM00421 helix_turn_helix, Lux Regulon Theco_3302 SM00382 ATPases associated with a variety of cellular activities Theco_3305 SM00382 ATPases associated with a variety of cellular activities Theco_3309 SM00052 Putative diguanylate phosphodiesterase Theco_3309 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Theco_3309 SM00091 PAS domain Theco_3309 SM00267 diguanylate cyclase Theco_3310 SM00487 DEAD-like helicases superfamily Theco_3310 SM00490 helicase superfamily c-terminal domain Theco_3311 SM00382 ATPases associated with a variety of cellular activities Theco_3313 SM00382 ATPases associated with a variety of cellular activities Theco_3322 SM00354 helix_turn _helix lactose operon repressor Theco_3325 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Theco_3325 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Theco_3326 SM00354 helix_turn _helix lactose operon repressor Theco_3331 SM00642 Alpha-amylase domain Theco_3336 SM00342 helix_turn_helix, arabinose operon control protein Theco_3336 SM00448 cheY-homologous receiver domain Theco_3337 SM00387 Histidine kinase-like ATPases Theco_3340 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_3345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3345 SM00387 Histidine kinase-like ATPases Theco_3346 SM00342 helix_turn_helix, arabinose operon control protein Theco_3346 SM00448 cheY-homologous receiver domain Theco_3350 SM00382 ATPases associated with a variety of cellular activities Theco_3360 SM00342 helix_turn_helix, arabinose operon control protein Theco_3360 SM00448 cheY-homologous receiver domain Theco_3361 SM00387 Histidine kinase-like ATPases Theco_3366 SM00354 helix_turn _helix lactose operon repressor Theco_3381 SM00342 helix_turn_helix, arabinose operon control protein Theco_3381 SM00448 cheY-homologous receiver domain Theco_3382 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3383 SM00060 Fibronectin type 3 domain Theco_3385 SM01207 Theco_3385 Theco_3390 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_3399 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_3402 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3402 SM00387 Histidine kinase-like ATPases Theco_3402 SM00388 His Kinase A (phosphoacceptor) domain Theco_3403 SM00448 cheY-homologous receiver domain Theco_3403 SM00862 Transcriptional regulatory protein, C terminal Theco_3409 SM00487 DEAD-like helicases superfamily Theco_3410 SM00448 cheY-homologous receiver domain Theco_3410 SM00862 Transcriptional regulatory protein, C terminal Theco_3411 SM00387 Histidine kinase-like ATPases Theco_3412 SM00382 ATPases associated with a variety of cellular activities Theco_3414 SM00267 diguanylate cyclase Theco_3421 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_3423 SM00422 helix_turn_helix, mercury resistance Theco_3425 SM00448 cheY-homologous receiver domain Theco_3425 SM00862 Transcriptional regulatory protein, C terminal Theco_3426 SM00387 Histidine kinase-like ATPases Theco_3426 SM00388 His Kinase A (phosphoacceptor) domain Theco_3428 SM00382 ATPases associated with a variety of cellular activities Theco_3434 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Theco_3436 SM00829 Enoylreductase Theco_3441 SM00382 ATPases associated with a variety of cellular activities Theco_3448 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_3452 SM00382 ATPases associated with a variety of cellular activities Theco_3467 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_3469 SM00226 Low molecular weight phosphatase family Theco_3479 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_3479 SM00357 Cold shock protein domain Theco_3479 SM00955 Theco_3479 Theco_3483 SM01192 Theco_3483 Theco_3483 SM01193 Theco_3483 Theco_3487 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Theco_3501 SM00028 Tetratricopeptide repeats Theco_3502 SM01400 Theco_3502 Theco_3516 SM00382 ATPases associated with a variety of cellular activities Theco_3531 SM00493 Theco_3531 Theco_3533 SM00382 ATPases associated with a variety of cellular activities Theco_3538 SM00357 Cold shock protein domain Theco_3538 SM00382 ATPases associated with a variety of cellular activities Theco_3538 SM00959 Rho termination factor, N-terminal domain Theco_3541 SM00448 cheY-homologous receiver domain Theco_3546 SM00836 DALR anticodon binding domain Theco_3546 SM01016 Arginyl tRNA synthetase N terminal dom Theco_3548 SM00998 Adenylosuccinate lyase C-terminus Theco_3556 SM00382 ATPases associated with a variety of cellular activities Theco_3558 SM00062 Bacterial periplasmic substrate-binding proteins Theco_3569 SM00487 DEAD-like helicases superfamily Theco_3569 SM00490 helicase superfamily c-terminal domain Theco_3574 SM00257 Lysin motif Theco_3583 SM00382 ATPases associated with a variety of cellular activities Theco_3597 SM00450 Rhodanese Homology Domain Theco_3600 SM00052 Putative diguanylate phosphodiesterase Theco_3604 SM00091 PAS domain Theco_3604 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Theco_3604 SM00387 Histidine kinase-like ATPases Theco_3604 SM00388 His Kinase A (phosphoacceptor) domain Theco_3626 SM00400 zinc finger Theco_3626 SM00885 D5 N terminal like Theco_3631 SM01120 Theco_3631 Theco_3632 SM00354 helix_turn _helix lactose operon repressor Theco_3633 SM01130 Theco_3633 Theco_3637 SM00460 Transglutaminase/protease-like homologues Theco_3641 SM00382 ATPases associated with a variety of cellular activities Theco_3644 SM00354 helix_turn _helix lactose operon repressor Theco_3654 SM00936 Penicillin-binding protein 5, C-terminal domain Theco_3655 SM00116 Domain in cystathionine beta-synthase and other proteins. Theco_3655 SM01240 Theco_3655 Theco_3660 SM00530 Helix-turn-helix XRE-family like proteins Theco_3662 SM00905 Dihydroneopterin aldolase Theco_3673 SM00829 Enoylreductase Theco_3674 SM00382 ATPases associated with a variety of cellular activities Theco_3682 SM00382 ATPases associated with a variety of cellular activities Theco_3684 SM00977 TilS substrate C-terminal domain Theco_3685 SM00220 Serine/Threonine protein kinases, catalytic domain Theco_3687 SM00331 Sigma factor PP2C-like phosphatases Theco_3687 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Theco_3690 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Theco_3691 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_3695 SM00363 S4 RNA-binding domain Theco_3696 SM00411 bacterial (prokaryotic) histone like domain Theco_3698 SM00966 SpoVT / AbrB like domain Theco_3701 SM00382 ATPases associated with a variety of cellular activities Theco_3702 SM00382 ATPases associated with a variety of cellular activities Theco_3716 SM00487 DEAD-like helicases superfamily Theco_3716 SM00490 helicase superfamily c-terminal domain Theco_3716 SM00982 Theco_3716 Theco_3716 SM01058 CarD-like/TRCF domain Theco_3729 SM00650 Ribosomal RNA adenine dimethylases Theco_3730 SM00493 Theco_3730 Theco_3731 SM01208 Theco_3731 Theco_3733 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_3734 SM00966 SpoVT / AbrB like domain Theco_3750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Theco_3751 SM00434 DNA Topoisomerase IV Theco_3754 SM00387 Histidine kinase-like ATPases Theco_3754 SM00433 TopoisomeraseII Theco_3758 SM00480 DNA polymerase III beta subunit Theco_3759 SM00382 ATPases associated with a variety of cellular activities Theco_3759 SM00760 Bacterial dnaA protein helix-turn-helix domain Theco_3763 SM00393 Putative single-stranded nucleic acids-binding domain Theco_3763 SM01245 Theco_3763 Theco_3765 SM01228 Theco_3765 Theco_3767 SM00470 ParB-like nuclease domain Theco_3769 SM00470 ParB-like nuclease domain Theco_3782 SM00342 helix_turn_helix, arabinose operon control protein Theco_3787 SM00116 Domain in cystathionine beta-synthase and other proteins. Theco_3790 SM00267 diguanylate cyclase Theco_3792 SM00382 ATPases associated with a variety of cellular activities Theco_3793 SM00788 Adenylosuccinate synthetase Theco_3796 SM00382 ATPases associated with a variety of cellular activities Theco_3800 SM00450 Rhodanese Homology Domain Theco_3801 SM00450 Rhodanese Homology Domain Theco_3803 SM00450 Rhodanese Homology Domain Theco_3803 SM00849 Metallo-beta-lactamase superfamily Theco_3807 SM00450 Rhodanese Homology Domain Theco_3817 SM00421 helix_turn_helix, Lux Regulon Theco_3817 SM00448 cheY-homologous receiver domain Theco_3818 SM00387 Histidine kinase-like ATPases Theco_3834 SM00635 Bacterial Ig-like domain 2 Theco_3857 SM00382 ATPases associated with a variety of cellular activities Theco_3859 SM00382 ATPases associated with a variety of cellular activities Theco_3879 SM00382 ATPases associated with a variety of cellular activities Theco_3883 SM00226 Low molecular weight phosphatase family Theco_3889 SM00937 Theco_3889 Theco_3914 SM00382 ATPases associated with a variety of cellular activities Theco_3922 SM00870 Theco_3922 Theco_3930 SM00345 helix_turn_helix gluconate operon transcriptional repressor Theco_3930 SM00895 Theco_3930 Theco_3940 SM00347 helix_turn_helix multiple antibiotic resistance protein Theco_3941 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Theco_3941 SM00091 PAS domain Theco_3941 SM00387 Histidine kinase-like ATPases Theco_3941 SM00388 His Kinase A (phosphoacceptor) domain Theco_3943 SM00382 ATPases associated with a variety of cellular activities Theco_3944 SM00849 Metallo-beta-lactamase superfamily Theco_3950 SM00382 ATPases associated with a variety of cellular activities Theco_3951 SM00382 ATPases associated with a variety of cellular activities Theco_3957 SM00507 HNH nucleases Theco_4001 SM00047 Lysozyme subfamily 2 Theco_4017 SM00316 Ribosomal protein S1-like RNA-binding domain Theco_4024 SM00858 Theco_4024 Theco_4035 SM00635 Bacterial Ig-like domain 2 Theco_4036 SM00267 diguanylate cyclase Theco_4038 SM00060 Fibronectin type 3 domain Theco_4047 SM00382 ATPases associated with a variety of cellular activities Theco_4057 SM00387 Histidine kinase-like ATPases Theco_4058 SM00421 helix_turn_helix, Lux Regulon Theco_4058 SM00448 cheY-homologous receiver domain Theco_4061 SM00382 ATPases associated with a variety of cellular activities Theco_4080 SM00487 DEAD-like helicases superfamily Theco_4083 SM00487 DEAD-like helicases superfamily Theco_4083 SM00491 Theco_4083 Theco_4087 SM00318 Staphylococcal nuclease homologues Theco_4099 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Theco_4100 SM00487 DEAD-like helicases superfamily Theco_4107 SM00480 DNA polymerase III beta subunit